-- dump date 20240507_090036 -- class Genbank::CDS -- table cds -- table main -- field 1 id -- field 2 GeneID -- field 3 chrom_position -- field 4 chromosome -- field 5 codon_start -- field 6 contig -- field 7 description -- field 8 end_pos -- field 9 gene -- field 10 gene_id -- field 11 name -- field 12 organism -- field 13 product -- field 14 protein_id -- field 15 start_pos -- field 16 strand -- field 17 taxid -- field 18 type -- header -- id GeneID chrom_position chromosome codon_start contig description end_pos gene gene_id name organism product protein_id start_pos strand taxid type AWJ20_1 30032752 3059..4897 A 1 NC_031672.1 Myo-inositol transporter; member of the sugar transporter superfamily; expressed constitutively; ITR2 has a paralog, ITR1, that arose from the whole genome duplication; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0016020 - membrane [Evidence ISS] [PMID 2040626]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 16233524]; GO_function: GO:0005365 - myo-inositol transmembrane transporter activity [Evidence IMP,ISS] [PMID 2040626]; GO_function: GO:0022891 - substrate-specific transmembrane transporter activity [Evidence IEA]; GO_function: GO:0022857 - transmembrane transporter activity [Evidence IEA]; GO_function: GO:0005215 - transporter activity [Evidence IEA]; GO_process: GO:0015798 - myo-inositol transport [Evidence IMP] [PMID 2040626]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; myo-inositol transporter ITR2 4897 ITR2 30032752 ITR2 Sugiyamaella lignohabitans myo-inositol transporter ITR2 XP_018734259.1 3059 D 796027 CDS AWJ20_2 30033862 complement(4990..6651) A 1 NC_031672.1 Plasma membrane transporter for both urea and polyamines; expression is highly sensitive to nitrogen catabolite repression and induced by allophanate, the last intermediate of the allantoin degradative pathway; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 17218313]; GO_component: GO:0005886 - plasma membrane [Evidence IMP,ISS] [PMID 8335627]; GO_function: GO:0015489 - putrescine transmembrane transporter activity [Evidence IDA,IMP] [PMID 17218313]; GO_function: GO:0015606 - spermidine transmembrane transporter activity [Evidence IDA,IMP] [PMID 17218313]; GO_function: GO:0005215 - transporter activity [Evidence IEA]; GO_function: GO:0015204 - urea transmembrane transporter activity [Evidence IMP,ISS] [PMID 8335627]; GO_process: GO:0015847 - putrescine transport [Evidence IDA,IMP] [PMID 17218313]; GO_process: GO:0015848 - spermidine transport [Evidence IDA,IMP] [PMID 17218313]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; GO_process: GO:0043419 - urea catabolic process [Evidence IEP] [PMID 8335627]; GO_process: GO:0015840 - urea transport [Evidence IMP,ISS] [PMID 8335627]; Dur3p 6651 DUR3 30033862 DUR3 Sugiyamaella lignohabitans Dur3p XP_018734260.1 4990 R 796027 CDS AWJ20_3 30034972 8242..9495 A 1 NC_031672.1 uncharacterized protein 9495 30034972 AWJ20_3 Sugiyamaella lignohabitans uncharacterized protein XP_018734261.1 8242 D 796027 CDS AWJ20_4 30036082 complement(9623..10366) A 1 NC_031672.1 Component of the cleavage and polyadenylation factor I (CF I); CF 1, composed of the CF 1A complex (Rna14p, Rna15p, Clp1p, Pcf11p) and Hrp1, is involved in cleavage and polyadenylation of mRNA 3' ends; interacts with the A-rich polyadenylation signal in complex with Rna14p and Hrp1p; mutant displays reduced transcription elongation in the G-less-based run-on (GLRO) assay; required for gene looping; GO_component: GO:0005849 - mRNA cleavage factor complex [Evidence IPI] [PMID 11344258]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 17684230]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0046982 - protein heterodimerization activity [Evidence IPI] [PMID 15215336]; GO_process: GO:0006379 - mRNA cleavage [Evidence IDA] [PMID 11344258]; GO_process: GO:0006378 - mRNA polyadenylation [Evidence IDA] [PMID 11344258]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; Rna15p 10366 RNA15 30036082 RNA15 Sugiyamaella lignohabitans Rna15p XP_018734262.1 9623 R 796027 CDS AWJ20_5 30037192 11423..11992 A 1 NC_031672.1 General transcription elongation factor TFIIS; enables RNA polymerase II to read through blocks to elongation by stimulating cleavage of nascent transcripts stalled at transcription arrest sites; maintains RNAPII elongation activity on ribosomal protein genes during conditions of transcriptional stress; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9334234]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0000993 - RNA polymerase II core binding [Evidence IPI] [PMID 6985606]; GO_function: GO:0000993 - RNA polymerase II core binding [Evidence IPI] [PMID 8876173]; GO_function: GO:0001012 - RNA polymerase II regulatory region DNA binding [Evidence IDA] [PMID 15767671]; GO_function: GO:0001139 - core RNA polymerase II recruiting transcription factor activity [Evidence IMP] [PMID 15767671]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0006379 - mRNA cleavage [Evidence IDA] [PMID 12692127]; GO_process: GO:0006379 - mRNA cleavage [Evidence IMP] [PMID 9712888]; GO_process: GO:0001193 - maintenance of transcriptional fidelity during DNA-templated transcription elongation from RNA polymerase II promoter [Evidence IMP] [PMID 14531857]; GO_process: GO:0001193 - maintenance of transcriptional fidelity during DNA-templated transcription elongation from RNA polymerase II promoter [Evidence IMP] [PMID 16492753]; GO_process: GO:0001193 - maintenance of transcriptional fidelity during DNA-templated transcription elongation from RNA polymerase II promoter [Evidence IGI] [PMID 17535246]; GO_process: GO:0045899 - positive regulation of RNA polymerase II transcriptional preinitiation complex assembly [Evidence IDA,IMP] [PMID 17913884]; GO_process: GO:0032968 - positive regulation of transcription elongation from RNA polymerase II promoter [Evidence IDA] [PMID 8876173]; GO_process: GO:0032784 - regulation of DNA-templated transcription, elongation [Evidence IEA]; GO_process: GO:0031440 - regulation of mRNA 3'-end processing [Evidence IGI,IMP] [PMID 15531585]; GO_process: GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence IEA]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA,IEA]; GO_process: GO:0042797 - tRNA transcription from RNA polymerase III promoter [Evidence IMP] [PMID 18628399]; GO_process: GO:0031564 - transcription antitermination [Evidence IDA] [PMID 8636112]; GO_process: GO:0031564 - transcription antitermination [Evidence IDA] [PMID 9037112]; GO_process: GO:0031564 - transcription antitermination [Evidence IDA] [PMID 9169440]; GO_process: GO:0006362 - transcription elongation from RNA polymerase I promoter [Evidence IDA] [PMID 7002153]; GO_process: GO:0006368 - transcription elongation from RNA polymerase II promoter [Evidence IDA] [PMID 7002153]; GO_process: GO:0006368 - transcription elongation from RNA polymerase II promoter [Evidence IDA] [PMID 7020755]; GO_process: GO:0006368 - transcription elongation from RNA polymerase II promoter [Evidence IDA,IMP] [PMID 8288647]; GO_process: GO:0006368 - transcription elongation from RNA polymerase II promoter [Evidence IDA] [PMID 9334234]; GO_process: GO:0006383 - transcription from RNA polymerase III promoter [Evidence IDA] [PMID 18628399]; GO_process: GO:0006367 - transcription initiation from RNA polymerase II promoter [Evidence IMP] [PMID 15767671]; GO_process: GO:0006367 - transcription initiation from RNA polymerase II promoter [Evidence IDA,IGI,IMP] [PMID 17901206]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA,IEA]; Dst1p 11992 DST1 30037192 DST1 Sugiyamaella lignohabitans Dst1p XP_018734263.1 11423 D 796027 CDS AWJ20_7 30037760 complement(16235..17284) A 1 NC_031672.1 Central component of the peroxisomal protein import machinery; peroxisomal membrane peroxin; interacts with both PTS1 (Pex5p) and PTS2 (Pex7p), peroxisomal matrix protein signal recognition factors and membrane receptor Pex13p; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005778 - peroxisomal membrane [Evidence IEA,IEA]; GO_component: GO:0005778 - peroxisomal membrane [Evidence IDA] [PMID 9094717]; GO_component: GO:0005778 - peroxisomal membrane [Evidence IDA] [PMID 9312008]; GO_component: GO:0005777 - peroxisome [Evidence IEA]; GO_function: GO:0030674 - protein binding, bridging [Evidence IPI] [PMID 9094717]; GO_function: GO:0030674 - protein binding, bridging [Evidence IPI] [PMID 9312008]; GO_process: GO:0016560 - protein import into peroxisome matrix, docking [Evidence IEA]; GO_process: GO:0016560 - protein import into peroxisome matrix, docking [Evidence IMP,IPI] [PMID 16107331]; GO_process: GO:0016560 - protein import into peroxisome matrix, docking [Evidence IPI] [PMID 9094717]; GO_process: GO:0016560 - protein import into peroxisome matrix, docking [Evidence IPI] [PMID 9312008]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Pex14p 17284 PEX14 30037760 PEX14 Sugiyamaella lignohabitans Pex14p XP_018734264.1 16235 R 796027 CDS AWJ20_8 30037871 19673..20566 A 1 NC_031672.1 alpha-aminoadipate reductase phosphopantetheinyl transferase Lys7 20566 lys7 30037871 lys7 Sugiyamaella lignohabitans alpha-aminoadipate reductase phosphopantetheinyl transferase Lys7 XP_018734265.1 19673 D 796027 CDS AWJ20_9 30037982 21028..22089 A 1 NC_031672.1 uncharacterized protein 22089 30037982 AWJ20_9 Sugiyamaella lignohabitans uncharacterized protein XP_018734266.1 21028 D 796027 CDS AWJ20_10 30032753 complement(join(22567..23382,23440..23658)) A 1 NC_031672.1 Mitochondrial peroxiredoxin with thioredoxin peroxidase activity; has a role in reduction of hydroperoxides; reactivation requires Trr2p and glutathione; induced during respiratory growth and oxidative stress; phosphorylated; protein abundance increases in response to DNA replication stress; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA,ISS] [PMID 10681558]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 10821871]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0016209 - antioxidant activity [Evidence IEA,IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0004601 - peroxidase activity [Evidence IEA]; GO_function: GO:0051920 - peroxiredoxin activity [Evidence IEA,IEA]; GO_function: GO:0008379 - thioredoxin peroxidase activity [Evidence IDA,IMP,ISS] [PMID 10681558]; GO_function: GO:0008379 - thioredoxin peroxidase activity [Evidence IDA] [PMID 10821871]; GO_process: GO:0045454 - cell redox homeostasis [Evidence IDA,IMP] [PMID 10681558]; GO_process: GO:0034599 - cellular response to oxidative stress [Evidence IGI] [PMID 15051715]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0046686 - response to cadmium ion [Evidence IMP] [PMID 19332553]; Prx1p 23658 PRX1 30032753 PRX1 Sugiyamaella lignohabitans Prx1p XP_018734267.1 22567 R 796027 CDS AWJ20_11 30032864 complement(23784..24494) A 1 NC_031672.1 Fungal Genetics Stock Center 12450; Fungal Genetics Stock Center 12449; chitin synthase 6 24494 30032864 AWJ20_11 Sugiyamaella lignohabitans chitin synthase 6 XP_018734268.1 23784 R 796027 CDS AWJ20_12 30032975 complement(24844..28581) A 1 NC_031672.1 Chitin synthase III; catalyzes the transfer of N-acetylglucosamine (GlcNAc) to chitin; required for synthesis of the majority of cell wall chitin, the chitin ring during bud emergence, and spore wall chitosan; contains overlapping di-leucine and di-acidic signals that mediate, respectively, intracellular trafficking by AP-1 and trafficking to plasma membrane by exomer complex; requires AP-3 complex for its intracellular retention; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 15470103]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 8909536]; GO_component: GO:0045009 - chitosome [Evidence IDA] [PMID 8970154]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 9008706]; GO_component: GO:0000131 - incipient cellular bud site [Evidence IDA] [PMID 15470103]; GO_component: GO:0000131 - incipient cellular bud site [Evidence IDA] [PMID 9008706]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 19053807]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005628 - prospore membrane [Evidence IDA] [PMID 15755916]; GO_function: GO:0004100 - chitin synthase activity [Evidence IEA]; GO_function: GO:0004100 - chitin synthase activity [Evidence IMP] [PMID 9760183]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA]; GO_function: GO:0016758 - transferase activity, transferring hexosyl groups [Evidence IEA]; GO_process: GO:0030476 - ascospore wall assembly [Evidence IMP] [PMID 1293886]; GO_process: GO:0034221 - fungal-type cell wall chitin biosynthetic process [Evidence TAS] [PMID 7565410]; chitin synthase CHS3 28581 CHS3 30032975 CHS3 Sugiyamaella lignohabitans chitin synthase CHS3 XP_018734269.1 24844 R 796027 CDS AWJ20_13 30033086 32456..37627 A 1 NC_031672.1 Chitin synthase III; catalyzes the transfer of N-acetylglucosamine (GlcNAc) to chitin; required for synthesis of the majority of cell wall chitin, the chitin ring during bud emergence, and spore wall chitosan; contains overlapping di-leucine and di-acidic signals that mediate, respectively, intracellular trafficking by AP-1 and trafficking to plasma membrane by exomer complex; requires AP-3 complex for its intracellular retention; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 15470103]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 8909536]; GO_component: GO:0045009 - chitosome [Evidence IDA] [PMID 8970154]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 9008706]; GO_component: GO:0000131 - incipient cellular bud site [Evidence IDA] [PMID 15470103]; GO_component: GO:0000131 - incipient cellular bud site [Evidence IDA] [PMID 9008706]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 19053807]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005628 - prospore membrane [Evidence IDA] [PMID 15755916]; GO_function: GO:0004100 - chitin synthase activity [Evidence IEA]; GO_function: GO:0004100 - chitin synthase activity [Evidence IMP] [PMID 9760183]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA]; GO_function: GO:0016758 - transferase activity, transferring hexosyl groups [Evidence IEA]; GO_process: GO:0030476 - ascospore wall assembly [Evidence IMP] [PMID 1293886]; GO_process: GO:0034221 - fungal-type cell wall chitin biosynthetic process [Evidence TAS] [PMID 7565410]; chitin synthase CHS3 37627 CHS3 30033086 CHS3 Sugiyamaella lignohabitans chitin synthase CHS3 XP_018734270.1 32456 D 796027 CDS AWJ20_14 30033197 complement(37767..40277) A 1 NC_031672.1 Non-ATPase base subunit of the 19S RP of the 26S proteasome; may participate in the recognition of several ligands of the proteasome; contains a leucine-rich repeat (LRR) domain, a site for protein-protein interactions; RP is the acronym for regulatory particle; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 11914276]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 15210724]; GO_component: GO:0000502 - proteasome complex [Evidence IEA,IEA]; GO_component: GO:0008540 - proteasome regulatory particle, base subcomplex [Evidence IDA] [PMID 9741626]; GO_component: GO:0034515 - proteasome storage granule [Evidence IDA] [PMID 18504300]; GO_function: GO:0004175 - endopeptidase activity [Evidence TAS] [PMID 8982460]; GO_function: GO:0004175 - endopeptidase activity [Evidence TAS] [PMID 9697412]; GO_function: GO:0030234 - enzyme regulator activity [Evidence IEA]; GO_function: GO:0030674 - protein binding, bridging [Evidence IPI] [PMID 12198498]; GO_function: GO:0030674 - protein binding, bridging [Evidence IPI] [PMID 12200120]; GO_process: GO:0050790 - regulation of catalytic activity [Evidence IEA]; GO_process: GO:0042176 - regulation of protein catabolic process [Evidence IEA]; GO_process: GO:0006511 - ubiquitin-dependent protein catabolic process [Evidence TAS] [PMID 8982460]; GO_process: GO:0006511 - ubiquitin-dependent protein catabolic process [Evidence TAS] [PMID 9697412]; proteasome regulatory particle base subunit RPN1 40277 RPN1 30033197 RPN1 Sugiyamaella lignohabitans proteasome regulatory particle base subunit RPN1 XP_018734271.1 37767 R 796027 CDS AWJ20_15 30033308 complement(40500..40793) A 1 NC_031672.1 Fungal Genetics Stock Center 13879; 26S proteasome regulatory subunit rpn1 40793 30033308 AWJ20_15 Sugiyamaella lignohabitans 26S proteasome regulatory subunit rpn1 XP_018734272.1 40500 R 796027 CDS AWJ20_16 30033419 complement(42237..44834) A 1 NC_031672.1 Dipeptidyl aminopeptidase; synthesized as a glycosylated precursor; localizes to the vacuolar membrane; similar to Ste13p; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 2647766]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0004177 - aminopeptidase activity [Evidence IEA]; GO_function: GO:0008239 - dipeptidyl-peptidase activity [Evidence IDA] [PMID 2647766]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_function: GO:0004252 - serine-type endopeptidase activity [Evidence IEA]; GO_function: GO:0008236 - serine-type peptidase activity [Evidence IEA,IEA]; GO_process: GO:0016485 - protein processing [Evidence ISS] [PMID 3305478]; GO_process: GO:0006508 - proteolysis [Evidence IEA,IEA]; Dap2p 44834 DAP2 30033419 DAP2 Sugiyamaella lignohabitans Dap2p XP_018734273.1 42237 R 796027 CDS AWJ20_17 30033530 complement(45313..46773) A 1 NC_031672.1 Serine/threonine MAP kinase; involved in regulating maintenance of cell wall integrity, cell cycle progression, and nuclear mRNA retention in heat shock; required for mitophagy and pexophagy; affects recruitment of mitochondria to phagophore assembly site (PAS); plays a role in adaptive response of cells to cold; regulated by the PKC1-mediated signaling pathway; SLT2 has a paralog, KDX1, that arose from the whole genome duplication; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 12361575]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 23924898]; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 12361575]; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 23924898]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 12361575]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 12361575]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 23924898]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004707 - MAP kinase activity [Evidence IEA,IEA]; GO_function: GO:0004707 - MAP kinase activity [Evidence ISS] [PMID 8386319]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0004672 - protein kinase activity [Evidence IEA]; GO_function: GO:0004672 - protein kinase activity [Evidence IDA] [PMID 16319894]; GO_function: GO:0004674 - protein serine/threonine kinase activity [Evidence IEA,IEA]; GO_function: GO:0004674 - protein serine/threonine kinase activity [Evidence IDA] [PMID 20823268]; GO_function: GO:0004674 - protein serine/threonine kinase activity [Evidence IDA] [PMID 24554767]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016772 - transferase activity, transferring phosphorus-containing groups [Evidence IEA]; GO_process: GO:0000165 - MAPK cascade [Evidence IEA,IEA]; GO_process: GO:0030969 - UFP-specific transcription factor mRNA processing involved in endoplasmic reticulum unfolded protein response [Evidence IMP] [PMID 18971375]; GO_process: GO:0000917 - barrier septum assembly [Evidence IGI] [PMID 19633265]; GO_process: GO:0030968 - endoplasmic reticulum unfolded protein response [Evidence IDA,IMP] [PMID 16380504]; GO_process: GO:0009272 - fungal-type cell wall biogenesis [Evidence IGI] [PMID 16524906]; GO_process: GO:0030242 - peroxisome degradation [Evidence IMP] [PMID 20385774]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; GO_process: GO:0006468 - protein phosphorylation [Evidence IEA]; GO_process: GO:0006468 - protein phosphorylation [Evidence IMP] [PMID 14703512]; GO_process: GO:0006468 - protein phosphorylation [Evidence IDA] [PMID 16319894]; GO_process: GO:0006468 - protein phosphorylation [Evidence IMP] [PMID 20219973]; GO_process: GO:0008361 - regulation of cell size [Evidence IMP] [PMID 17302939]; GO_process: GO:0060237 - regulation of fungal-type cell wall organization [Evidence IGI,IMP] [PMID 8386319]; GO_process: GO:0042990 - regulation of transcription factor import into nucleus [Evidence IMP] [PMID 20219973]; GO_process: GO:0001101 - response to acid [Evidence IMP] [PMID 16087742]; GO_process: GO:0007165 - signal transduction [Evidence IMP] [PMID 8386319]; mitogen-activated serine/threonine-protein kinase SLT2 46773 SLT2 30033530 SLT2 Sugiyamaella lignohabitans mitogen-activated serine/threonine-protein kinase SLT2 XP_018734274.1 45313 R 796027 CDS AWJ20_18 30033641 49037..49366 A 1 NC_031672.1 RNA polymerase subunit ABC14.5; common to RNA polymerases I, II, and III; GO_component: GO:0005736 - DNA-directed RNA polymerase I complex [Evidence IDA] [PMID 11486042]; GO_component: GO:0005736 - DNA-directed RNA polymerase I complex [Evidence IDA] [PMID 9837969]; GO_component: GO:0005665 - DNA-directed RNA polymerase II, core complex [Evidence IDA] [PMID 1331084]; GO_component: GO:0005665 - DNA-directed RNA polymerase II, core complex [Evidence IDA] [PMID 2183013]; GO_component: GO:0005665 - DNA-directed RNA polymerase II, core complex [Evidence IDA] [PMID 2186966]; GO_component: GO:0005666 - DNA-directed RNA polymerase III complex [Evidence IDA] [PMID 10611227]; GO_component: GO:0005666 - DNA-directed RNA polymerase III complex [Evidence IDA] [PMID 3905793]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0003899 - DNA-directed RNA polymerase activity [Evidence IEA]; GO_function: GO:0001054 - RNA polymerase I activity [Evidence IDA] [PMID 9837969]; GO_function: GO:0001055 - RNA polymerase II activity [Evidence IDA] [PMID 8288647]; GO_function: GO:0001056 - RNA polymerase III activity [Evidence IDA] [PMID 3905793]; GO_function: GO:0003968 - RNA-directed RNA polymerase activity [Evidence IDA] [PMID 18004386]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; GO_process: GO:0042797 - tRNA transcription from RNA polymerase III promoter [Evidence IDA] [PMID 3905793]; GO_process: GO:0006360 - transcription from RNA polymerase I promoter [Evidence IPI] [PMID 11486042]; GO_process: GO:0006360 - transcription from RNA polymerase I promoter [Evidence IDA] [PMID 9837969]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IPI] [PMID 11486042]; GO_process: GO:0006383 - transcription from RNA polymerase III promoter [Evidence IPI] [PMID 11486042]; GO_process: GO:0006383 - transcription from RNA polymerase III promoter [Evidence IGI] [PMID 9927738]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; DNA-directed RNA polymerase core subunit RPB8 49366 RPB8 30033641 RPB8 Sugiyamaella lignohabitans DNA-directed RNA polymerase core subunit RPB8 XP_018734275.1 49037 D 796027 CDS AWJ20_20 30033863 52538..53896 A 1 NC_031672.1 Aspartic protease; member of the yapsin family of proteases involved in cell wall growth and maintenance; attached to the plasma membrane via a glycosylphosphatidylinositol (GPI) anchor; GO_component: GO:0031225 - anchored component of membrane [Evidence IEA]; GO_component: GO:0046658 - anchored component of plasma membrane [Evidence IDA,IPI] [PMID 11016834]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_function: GO:0004190 - aspartic-type endopeptidase activity [Evidence IEA,IEA]; GO_function: GO:0004190 - aspartic-type endopeptidase activity [Evidence IDA,ISS] [PMID 10191273]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_process: GO:0031505 - fungal-type cell wall organization [Evidence IGI] [PMID 16087741]; GO_process: GO:0006508 - proteolysis [Evidence IEA,IEA]; Yps3p 53896 YPS3 30033863 YPS3 Sugiyamaella lignohabitans Yps3p XP_018734276.1 52538 D 796027 CDS AWJ20_22 30034084 55160..56650 A 1 NC_031672.1 Polyamine transporter of the major facilitator superfamily; member of the 12-spanner drug:H(+) antiporter DHA1 family; specific for spermine; localizes to the plasma membrane; TPO3 has a paralog, TPO2, that arose from the whole genome duplication; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IMP] [PMID 11171066]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 12562762]; GO_function: GO:0015297 - antiporter activity [Evidence IEA]; GO_function: GO:0000297 - spermine transmembrane transporter activity [Evidence IMP] [PMID 11171066]; GO_process: GO:0000296 - spermine transport [Evidence IMP] [PMID 11171066]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Tpo3p 56650 TPO3 30034084 TPO3 Sugiyamaella lignohabitans Tpo3p XP_018734277.1 55160 D 796027 CDS AWJ20_23 30034195 57051..57665 A 1 NC_031672.1 Mitochondrial ribosomal protein of the large subunit; mutation confers increased replicative lifespan; GO_component: GO:0005762 - mitochondrial large ribosomal subunit [Evidence IPI] [PMID 12392552]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IPI] [PMID 12392552]; GO_process: GO:0032543 - mitochondrial translation [Evidence IC] [PMID 12392552]; mitochondrial 54S ribosomal protein YmL25 57665 MRPL25 30034195 MRPL25 Sugiyamaella lignohabitans mitochondrial 54S ribosomal protein YmL25 XP_018734278.1 57051 D 796027 CDS AWJ20_24 30034306 complement(57742..59451) A 1 NC_031672.1 Oxalyl-CoA synthetase; capable of catalyzing conversion of oxalate to oxalyl-CoA; catalyzes first step in pathway of oxalate degradation that functions to protect yeast from inhibitory effects of oxalate; peroxisomal protein that binds mRNA; localizes to both peroxisomal peripheral membrane and matrix, expression is highly inducible by oleic acid; similar to E. coli long chain acyl-CoA synthetase; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005782 - peroxisomal matrix [Evidence IEA]; GO_component: GO:0005782 - peroxisomal matrix [Evidence IDA] [PMID 8841414]; GO_component: GO:0005778 - peroxisomal membrane [Evidence IEA]; GO_component: GO:0005778 - peroxisomal membrane [Evidence IDA] [PMID 8841414]; GO_component: GO:0005777 - peroxisome [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 20844764]; GO_function: GO:0050203 - oxalate-CoA ligase activity [Evidence IDA,IMP] [PMID 24291261]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0033611 - oxalate catabolic process [Evidence IDA,IMP] [PMID 24291261]; Pcs60p 59451 PCS60 30034306 PCS60 Sugiyamaella lignohabitans Pcs60p XP_018734279.1 57742 R 796027 CDS AWJ20_25 30034417 complement(60984..61322) A 1 NC_031672.1 Core Sm protein Sm D1; part of heteroheptameric complex (with Smb1p, Smd2p, Smd3p, Sme1p, Smx3p, and Smx2p) that is part of the spliceosomal U1, U2, U4, and U5 snRNPs; relocalizes to the cytosol in response to hypoxia; homolog of human Sm D1; protein abundance increases in response to DNA replication stress; GO_component: GO:0005685 - U1 snRNP [Evidence IDA] [PMID 9012791]; GO_component: GO:0005685 - U1 snRNP [Evidence IDA] [PMID 9630245]; GO_component: GO:0071004 - U2-type prespliceosome [Evidence IDA] [PMID 16618970]; GO_component: GO:0046540 - U4/U6 x U5 tri-snRNP complex [Evidence IDA] [PMID 10377396]; GO_component: GO:0046540 - U4/U6 x U5 tri-snRNP complex [Evidence IDA] [PMID 10449419]; GO_component: GO:0005682 - U5 snRNP [Evidence IDA] [PMID 11720284]; GO_component: GO:0005682 - U5 snRNP [Evidence IDA] [PMID 11720285]; GO_component: GO:0000243 - commitment complex [Evidence IPI] [PMID 10072386]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 22932476]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22932476]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003729 - mRNA binding [Evidence IPI] [PMID 10072386]; GO_process: GO:0008380 - RNA splicing [Evidence IEA]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0000398 - mRNA splicing, via spliceosome [Evidence IPI] [PMID 10072386]; GO_process: GO:0000398 - mRNA splicing, via spliceosome [Evidence IPI] [PMID 10377396]; GO_process: GO:0000398 - mRNA splicing, via spliceosome [Evidence IMP] [PMID 8430095]; Smd1p 61322 SMD1 30034417 SMD1 Sugiyamaella lignohabitans Smd1p XP_018734280.1 60984 R 796027 CDS AWJ20_26 30034528 65268..66761 A 1 NC_031672.1 Folylpolyglutamate synthetase; catalyzes extension of the glutamate chains of the folate coenzymes, required for methionine synthesis and for maintenance of mitochondrial DNA; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 10775416]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 10775416]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016874 - ligase activity [Evidence IEA,IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0004326 - tetrahydrofolylpolyglutamate synthase activity [Evidence IEA,IEA]; GO_function: GO:0004326 - tetrahydrofolylpolyglutamate synthase activity [Evidence IDA] [PMID 10775416]; GO_process: GO:0009058 - biosynthetic process [Evidence IEA]; GO_process: GO:0009396 - folic acid-containing compound biosynthetic process [Evidence IEA]; GO_process: GO:0006730 - one-carbon metabolic process [Evidence IEA]; GO_process: GO:0006730 - one-carbon metabolic process [Evidence IMP] [PMID 10775416]; GO_process: GO:0046901 - tetrahydrofolylpolyglutamate biosynthetic process [Evidence IEA]; tetrahydrofolate synthase 66761 MET7 30034528 MET7 Sugiyamaella lignohabitans tetrahydrofolate synthase XP_018734281.1 65268 D 796027 CDS AWJ20_27 30034639 complement(66962..68458) A 1 NC_031672.1 Tyrosyl-DNA phosphodiesterase I; hydrolyzes 3' and 5'-phosphotyrosyl bonds; involved in the repair of DNA lesions created by topoisomerase I and topoisomerase II; mutations in human homolog result in the neurodegenerative disease SCANI; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 12206772]; GO_function: GO:0017005 - 3'-tyrosyl-DNA phosphodiesterase activity [Evidence IDA] [PMID 10521354]; GO_function: GO:0070260 - 5'-tyrosyl-DNA phosphodiesterase activity [Evidence IDA] [PMID 16751265]; GO_function: GO:0004527 - exonuclease activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0004518 - nuclease activity [Evidence IEA]; GO_function: GO:0008081 - phosphoric diester hydrolase activity [Evidence IEA]; GO_process: GO:0006281 - DNA repair [Evidence IEA,IEA]; GO_process: GO:0006281 - DNA repair [Evidence IMP] [PMID 10521354]; GO_process: GO:0006281 - DNA repair [Evidence IMP] [PMID 15135727]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0090305 - nucleic acid phosphodiester bond hydrolysis [Evidence IEA]; tyrosyl-DNA phosphodiesterase 1 68458 TDP1 30034639 TDP1 Sugiyamaella lignohabitans tyrosyl-DNA phosphodiesterase 1 XP_018734282.1 66962 R 796027 CDS AWJ20_28 30034750 71937..74573 A 1 NC_031672.1 Protein implicated in polar growth; functionally redundant with Boi2p; interacts with bud-emergence protein Bem1p; contains an SH3 (src homology 3) domain and a PH (pleckstrin homology) domain; relocalizes from bud neck to cytoplasm upon DNA replication stress; BOI1 has a paralog, BOI2, that arose from the whole genome duplication; GO_component: GO:0005933 - cellular bud [Evidence IDA] [PMID 12097146]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 12097146]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 22842922]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 19053807]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 22842922]; GO_component: GO:0030427 - site of polarized growth [Evidence IDA] [PMID 12097146]; GO_function: GO:0005543 - phospholipid binding [Evidence IDA] [PMID 12097146]; GO_process: GO:0007118 - budding cell apical bud growth [Evidence IGI] [PMID 17417630]; GO_process: GO:0007109 - cytokinesis, completion of separation [Evidence IGI] [PMID 16615892]; Boi1p 74573 BOI1 30034750 BOI1 Sugiyamaella lignohabitans Boi1p XP_018734283.1 71937 D 796027 CDS AWJ20_29 30034861 complement(74755..77142) A 1 NC_031672.1 Subunit of the Anaphase-Promoting Complex/Cyclosome (APC/C); APC/C is a ubiquitin-protein ligase required for degradation of anaphase inhibitors, including mitotic cyclins, during the metaphase/anaphase transition; GO_component: GO:0005680 - anaphase-promoting complex [Evidence IDA] [PMID 9469814]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence IMP] [PMID 16481473]; GO_process: GO:0031145 - anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 16481473]; GO_process: GO:0031145 - anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process [Evidence IDA] [PMID 8895471]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0007067 - mitotic nuclear division [Evidence IEA]; GO_process: GO:0016567 - protein ubiquitination [Evidence IEA]; GO_process: GO:0016567 - protein ubiquitination [Evidence IDA,IMP] [PMID 16481473]; anaphase promoting complex subunit CDC27 77142 CDC27 30034861 CDC27 Sugiyamaella lignohabitans anaphase promoting complex subunit CDC27 XP_018734284.1 74755 R 796027 CDS AWJ20_30 30034973 78732..80636 A 1 NC_031672.1 Protein with a role in cellular adhesion and filamentous growth; similar to Emp70p and Tmn2p; member of Transmembrane Nine family with 9 transmembrane segments; localizes to Golgi; induced by 8-methoxypsoralen plus UVA irradiation; GO_component: GO:0030137 - COPI-coated vesicle [Evidence IDA] [PMID 14562095]; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0005794 - Golgi apparatus [Evidence IDA] [PMID 14562095]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006878 - cellular copper ion homeostasis [Evidence IGI] [PMID 20681974]; GO_process: GO:0001403 - invasive growth in response to glucose limitation [Evidence IMP] [PMID 18178563]; GO_process: GO:0007124 - pseudohyphal growth [Evidence IGI] [PMID 18178563]; GO_process: GO:0007034 - vacuolar transport [Evidence IGI] [PMID 20526336]; Tmn3p 80636 TMN3 30034973 TMN3 Sugiyamaella lignohabitans Tmn3p XP_018734285.1 78732 D 796027 CDS AWJ20_32 30035195 complement(87056..87262) A 1 NC_031672.1 NAD(+)-dependent formate dehydrogenase; may protect cells from exogenous formate; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 11921099]; GO_function: GO:0051287 - NAD binding [Evidence IEA]; GO_function: GO:0048037 - cofactor binding [Evidence IEA]; GO_function: GO:0008863 - formate dehydrogenase (NAD+) activity [Evidence IEA]; GO_function: GO:0008863 - formate dehydrogenase (NAD+) activity [Evidence IGI,ISS] [PMID 11921099]; GO_function: GO:0008863 - formate dehydrogenase (NAD+) activity [Evidence IDA] [PMID 21246355]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor [Evidence IEA]; GO_process: GO:0042183 - formate catabolic process [Evidence IGI] [PMID 11921099]; GO_process: GO:0042183 - formate catabolic process [Evidence IGI] [PMID 19564482]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; formate dehydrogenase (NAD+) 87262 FDH1 30035195 FDH1 Sugiyamaella lignohabitans formate dehydrogenase (NAD+) XP_018734286.1 87056 R 796027 CDS AWJ20_33 30035306 complement(87345..88211) A 1 NC_031672.1 NAD(+)-dependent formate dehydrogenase; may protect cells from exogenous formate; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 11921099]; GO_function: GO:0051287 - NAD binding [Evidence IEA]; GO_function: GO:0048037 - cofactor binding [Evidence IEA]; GO_function: GO:0008863 - formate dehydrogenase (NAD+) activity [Evidence IEA]; GO_function: GO:0008863 - formate dehydrogenase (NAD+) activity [Evidence IGI,ISS] [PMID 11921099]; GO_function: GO:0008863 - formate dehydrogenase (NAD+) activity [Evidence IDA] [PMID 21246355]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor [Evidence IEA]; GO_process: GO:0042183 - formate catabolic process [Evidence IGI] [PMID 11921099]; GO_process: GO:0042183 - formate catabolic process [Evidence IGI] [PMID 19564482]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; formate dehydrogenase (NAD+) 88211 FDH1 30035306 FDH1 Sugiyamaella lignohabitans formate dehydrogenase (NAD+) XP_018734287.1 87345 R 796027 CDS AWJ20_34 30035417 88842..90113 A 1 NC_031672.1 D-serine dehydratase (aka D-serine ammonia-lyase); converts D-serine to pyruvate and ammonia by a reaction dependent on pyridoxal 5'-phosphate and zinc; may play a role in D-serine detoxification; L-serine is not a substrate; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0008721 - D-serine ammonia-lyase activity [Evidence IEA]; GO_function: GO:0008721 - D-serine ammonia-lyase activity [Evidence IDA] [PMID 17869212]; GO_function: GO:0008721 - D-serine ammonia-lyase activity [Evidence IDA] [PMID 17937657]; GO_function: GO:0016829 - lyase activity [Evidence IEA]; GO_process: GO:0070178 - D-serine metabolic process [Evidence IMP] [PMID 17937657]; D-serine ammonia-lyase DSD1 90113 DSD1 30035417 DSD1 Sugiyamaella lignohabitans D-serine ammonia-lyase DSD1 XP_018734288.1 88842 D 796027 CDS AWJ20_35 30035528 complement(90182..92092) A 1 NC_031672.1 TFIID subunit (65 kDa); involved in RNA polymerase II transcription initiation; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11914276]; GO_component: GO:0005669 - transcription factor TFIID complex [Evidence IDA] [PMID 10788514]; GO_component: GO:0005669 - transcription factor TFIID complex [Evidence IDA] [PMID 15448131]; GO_function: GO:0001075 - RNA polymerase II core promoter sequence-specific DNA binding transcription factor activity involved in preinitiation complex assembly [Evidence IC] [PMID 15448131]; GO_process: GO:0051123 - RNA polymerase II transcriptional preinitiation complex assembly [Evidence IC] [PMID 10788514]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IDA] [PMID 12138208]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IDA] [PMID 15448131]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Taf8p 92092 TAF8 30035528 TAF8 Sugiyamaella lignohabitans Taf8p XP_018734289.1 90182 R 796027 CDS AWJ20_36 30035639 complement(92508..94247) A 1 NC_031672.1 D-lactate dehydrogenase; oxidizes D-lactate to pyruvate, transcription is heme-dependent, repressed by glucose, and derepressed in ethanol or lactate; located in the mitochondrial inner membrane; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IDA] [PMID 9525904]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 11502169]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0004458 - D-lactate dehydrogenase (cytochrome) activity [Evidence IEA]; GO_function: GO:0004458 - D-lactate dehydrogenase (cytochrome) activity [Evidence IMP,ISS] [PMID 8492799]; GO_function: GO:0008762 - UDP-N-acetylmuramate dehydrogenase activity [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0016614 - oxidoreductase activity, acting on CH-OH group of donors [Evidence IEA]; GO_process: GO:0009060 - aerobic respiration [Evidence IMP] [PMID 8492799]; GO_process: GO:0044262 - cellular carbohydrate metabolic process [Evidence IMP] [PMID 8492799]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; Dld1p 94247 DLD1 30035639 DLD1 Sugiyamaella lignohabitans Dld1p XP_018734290.1 92508 R 796027 CDS AWJ20_37 30035749 complement(94768..95985) A 1 NC_031672.1 Nuclear-enriched ubiquitin-like polyubiquitin-binding protein; required for spindle pole body (SPB) duplication and for transit through the G2/M phase of the cell cycle; involved in proteolysis; interacts with the proteasome; protein abundance increases in response to DNA replication stress; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IC] [PMID 8070654]; GO_function: GO:0030674 - protein binding, bridging [Evidence IMP,IPI] [PMID 11805328]; GO_process: GO:0030433 - ER-associated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 15167887]; GO_process: GO:0030474 - spindle pole body duplication [Evidence IGI] [PMID 8070654]; Dsk2p 95985 DSK2 30035749 DSK2 Sugiyamaella lignohabitans Dsk2p XP_018734291.1 94768 R 796027 CDS AWJ20_39 30035971 complement(96976..100074) A 1 NC_031672.1 Constituent of 66S pre-ribosomal particles; required for large (60S) ribosomal subunit biogenesis; acts as part of a Mak21p-Noc2p-Rrp5p module that associates with nascent pre-rRNA during transcription and has a role in bigenesis of the large ribosomal subunit; involved in nuclear export of pre-ribosomes; required for maintenance of dsRNA virus; homolog of human CAATT-binding protein; GO_component: GO:0030690 - Noc1p-Noc2p complex [Evidence IPI] [PMID 11371346]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 23209026]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 23212245]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_process: GO:0000027 - ribosomal large subunit assembly [Evidence IMP] [PMID 9786894]; GO_process: GO:0042273 - ribosomal large subunit biogenesis [Evidence IMP] [PMID 23209026]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; Mak21p 100074 MAK21 30035971 MAK21 Sugiyamaella lignohabitans Mak21p XP_018734292.1 96976 R 796027 CDS AWJ20_40 30036083 complement(100553..103243) A 1 NC_031672.1 transcription factor MBP1 103243 MBP1 30036083 MBP1 Sugiyamaella lignohabitans transcription factor MBP1 XP_018734293.1 100553 R 796027 CDS AWJ20_41 30036194 complement(106800..108671) A 1 NC_031672.1 Protein with a role in cellular adhesion and filamentous growth; also endosome-to-vacuole sorting; similar to Tmn3p; member of Transmembrane Nine family of proteins with 9 transmembrane segments; EMP70 has a paralog, TMN2, that arose from the whole genome duplication; GO_component: GO:0005768 - endosome [Evidence IEA]; GO_component: GO:0005768 - endosome [Evidence IDA] [PMID 8314797]; GO_component: GO:0010008 - endosome membrane [Evidence IEA]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 20681974]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006878 - cellular copper ion homeostasis [Evidence IGI,IMP] [PMID 20681974]; GO_process: GO:0016197 - endosomal transport [Evidence IMP] [PMID 20526336]; GO_process: GO:0001403 - invasive growth in response to glucose limitation [Evidence IMP] [PMID 18178563]; GO_process: GO:0007124 - pseudohyphal growth [Evidence IGI] [PMID 18178563]; GO_process: GO:0007034 - vacuolar transport [Evidence IGI] [PMID 20526336]; Emp70p 108671 EMP70 30036194 EMP70 Sugiyamaella lignohabitans Emp70p XP_018734294.1 106800 R 796027 CDS AWJ20_42 30036305 109594..111672 A 1 NC_031672.1 Component of transport protein particle (TRAPP) complex III; TRAPPIII is a multimeric guanine nucleotide-exchange factor for the GTPase Ypt1p, regulating endosome-Golgi traffic and required for membrane expansion during autophagy and the CVT pathway; directs Ypt1p to the PAS; late post-replication meiotic role; GO_component: GO:0005794 - Golgi apparatus [Evidence IDA] [PMID 23986483]; GO_component: GO:1990072 - TRAPPIII protein complex [Evidence IDA] [PMID 20375281]; GO_component: GO:0031410 - cytoplasmic vesicle [Evidence IDA] [PMID 23129774]; GO_component: GO:0000407 - pre-autophagosomal structure [Evidence IEA]; GO_component: GO:0000407 - pre-autophagosomal structure [Evidence IDA] [PMID 20375281]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0032258 - CVT pathway [Evidence IMP] [PMID 16874038]; GO_process: GO:0032258 - CVT pathway [Evidence IMP] [PMID 20375281]; GO_process: GO:0006888 - ER to Golgi vesicle-mediated transport [Evidence IGI] [PMID 10727015]; GO_process: GO:0006888 - ER to Golgi vesicle-mediated transport [Evidence IMP] [PMID 11239471]; GO_process: GO:0000045 - autophagic vacuole assembly [Evidence IMP] [PMID 23129774]; GO_process: GO:0006914 - autophagy [Evidence IEA]; GO_process: GO:0016236 - macroautophagy [Evidence IMP] [PMID 16079147]; GO_process: GO:0016236 - macroautophagy [Evidence IMP] [PMID 16874038]; GO_process: GO:0016236 - macroautophagy [Evidence IMP] [PMID 20375281]; GO_process: GO:0007126 - meiotic nuclear division [Evidence IEA]; GO_process: GO:0007126 - meiotic nuclear division [Evidence IMP] [PMID 8619313]; GO_process: GO:0030242 - peroxisome degradation [Evidence IMP] [PMID 16079147]; GO_process: GO:0030242 - peroxisome degradation [Evidence IMP] [PMID 16874038]; GO_process: GO:0034727 - piecemeal microautophagy of nucleus [Evidence IMP] [PMID 18701704]; GO_process: GO:0034497 - protein localization to pre-autophagosomal structure [Evidence IMP] [PMID 20375281]; GO_process: GO:0034497 - protein localization to pre-autophagosomal structure [Evidence IMP] [PMID 23129774]; GO_process: GO:0030435 - sporulation resulting in formation of a cellular spore [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0016050 - vesicle organization [Evidence IMP] [PMID 16079147]; Trs85p 111672 TRS85 30036305 TRS85 Sugiyamaella lignohabitans Trs85p XP_018734295.1 109594 D 796027 CDS AWJ20_43 30036416 complement(112903..115359) A 1 NC_031672.1 Multifunctional enzyme of the folic acid biosynthesis pathway; has dihydropteroate synthetase, dihydro-6-hydroxymethylpterin pyrophosphokinase, and dihydroneopterin aldolase activities; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 8813764]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005740 - mitochondrial envelope [Evidence IDA] [PMID 15169867]; GO_component: GO:0031966 - mitochondrial membrane [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0003848 - 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase activity [Evidence IEA,IEA]; GO_function: GO:0003848 - 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase activity [Evidence IDA] [PMID 15169867]; GO_function: GO:0003848 - 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase activity [Evidence ISS] [PMID 9234673]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0004150 - dihydroneopterin aldolase activity [Evidence IEA,IEA]; GO_function: GO:0004150 - dihydroneopterin aldolase activity [Evidence ISS] [PMID 11752249]; GO_function: GO:0004150 - dihydroneopterin aldolase activity [Evidence IDA] [PMID 15169867]; GO_function: GO:0004156 - dihydropteroate synthase activity [Evidence IEA,IEA]; GO_function: GO:0004156 - dihydropteroate synthase activity [Evidence IMP] [PMID 11731153]; GO_function: GO:0004156 - dihydropteroate synthase activity [Evidence IDA] [PMID 15169867]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0016829 - lyase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0044237 - cellular metabolic process [Evidence IEA]; GO_process: GO:0046656 - folic acid biosynthetic process [Evidence IEA]; GO_process: GO:0009396 - folic acid-containing compound biosynthetic process [Evidence IEA]; GO_process: GO:0006760 - folic acid-containing compound metabolic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; GO_process: GO:0042558 - pteridine-containing compound metabolic process [Evidence IEA]; GO_process: GO:0046654 - tetrahydrofolate biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0046654 - tetrahydrofolate biosynthetic process [Evidence IMP] [PMID 11731153]; GO_process: GO:0046654 - tetrahydrofolate biosynthetic process [Evidence IMP] [PMID 15169867]; trifunctional dihydropteroate synthetase/dihydrohydroxymethylpterin pyrophosphokinase/dihydroneopterin aldolase FOL1 115359 FOL1 30036416 FOL1 Sugiyamaella lignohabitans trifunctional dihydropteroate synthetase/dihydrohydroxymethylpterin pyrophosphokinase/dihydroneopterin aldolase FOL1 XP_018734296.1 112903 R 796027 CDS AWJ20_44 30036527 118444..120015 A 1 NC_031672.1 uncharacterized protein 120015 30036527 AWJ20_44 Sugiyamaella lignohabitans uncharacterized protein XP_018734297.1 118444 D 796027 CDS AWJ20_45 30036638 122886..123890 A 1 NC_031672.1 Basic leucine zipper (bZIP) transcription factor; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IPI] [PMID 9372930]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19111667]; GO_function: GO:0003700 - sequence-specific DNA binding transcription factor activity [Evidence IEA]; GO_function: GO:0003700 - sequence-specific DNA binding transcription factor activity [Evidence IDA] [PMID 9372930]; GO_process: GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence IDA] [PMID 9372930]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA,IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Yap3p 123890 YAP3 30036638 YAP3 Sugiyamaella lignohabitans Yap3p XP_018734298.1 122886 D 796027 CDS AWJ20_46 30036749 complement(124269..126014) A 1 NC_031672.1 Polyamine transporter of the major facilitator superfamily; member of the 12-spanner drug:H(+) antiporter DHA1 family; recognizes spermine, putrescine, and spermidine; catalyzes uptake of polyamines at alkaline pH and excretion at acidic pH; during oxidative stress exports spermine, spermidine from the cell, which controls timing of expression of stress-responsive genes; phosphorylation enhances activity and sorting to the plasma membrane; GO_component: GO:0033101 - cellular bud membrane [Evidence IDA] [PMID 13679573]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IMP] [PMID 11171066]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 12562762]; GO_component: GO:0005886 - plasma membrane [Evidence IDA,IMP] [PMID 15637075]; GO_function: GO:0015297 - antiporter activity [Evidence IEA]; GO_function: GO:0015606 - spermidine transmembrane transporter activity [Evidence IMP] [PMID 11171066]; GO_function: GO:0015606 - spermidine transmembrane transporter activity [Evidence IDA,IMP] [PMID 15637075]; GO_function: GO:0000297 - spermine transmembrane transporter activity [Evidence IMP] [PMID 11171066]; GO_function: GO:0000297 - spermine transmembrane transporter activity [Evidence IDA,IMP] [PMID 15637075]; GO_function: GO:0000297 - spermine transmembrane transporter activity [Evidence IMP] [PMID 9920864]; GO_process: GO:1902047 - polyamine transmembrane transport [Evidence IMP] [PMID 24136413]; GO_process: GO:0015847 - putrescine transport [Evidence IMP] [PMID 9920864]; GO_process: GO:0015848 - spermidine transport [Evidence IMP] [PMID 11171066]; GO_process: GO:0015848 - spermidine transport [Evidence IDA,IMP] [PMID 15637075]; GO_process: GO:0015848 - spermidine transport [Evidence IMP] [PMID 9920864]; GO_process: GO:0000296 - spermine transport [Evidence IMP] [PMID 11171066]; GO_process: GO:0000296 - spermine transport [Evidence IDA,IMP] [PMID 15637075]; GO_process: GO:0000296 - spermine transport [Evidence IMP] [PMID 9920864]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Tpo1p 126014 TPO1 30036749 TPO1 Sugiyamaella lignohabitans Tpo1p XP_018734299.1 124269 R 796027 CDS AWJ20_47 30036859 129232..131217 A 1 NC_031672.1 AMP-activated serine/threonine protein kinase; found in a complex containing Snf4p and members of the Sip1p/Sip2p/Gal83p family; required for transcription of glucose-repressed genes, thermotolerance, sporulation, and peroxisome biogenesis; involved in regulation of the nucleocytoplasmic shuttling of Hxk2p; regulates filamentous growth in response to starvation; SUMOylation by Mms21p inhibits its function and targets Snf1p for destruction via the Slx5-Slx8 Ubiquitin ligase; GO_component: GO:0031588 - AMP-activated protein kinase complex [Evidence IDA] [PMID 12393914]; GO_component: GO:0031588 - AMP-activated protein kinase complex [Evidence IDA,IPI] [PMID 2481228]; GO_component: GO:0031588 - AMP-activated protein kinase complex [Evidence IPI] [PMID 9121458]; GO_component: GO:0005737 - cytoplasm [Evidence IPI] [PMID 11331606]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 17237508]; GO_component: GO:0000324 - fungal-type vacuole [Evidence IPI] [PMID 11331606]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005641 - nuclear envelope lumen [Evidence IDA] [PMID 17237508]; GO_component: GO:0031965 - nuclear membrane [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IPI] [PMID 11331606]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 17237508]; GO_function: GO:0004679 - AMP-activated protein kinase activity [Evidence IMP] [PMID 11486005]; GO_function: GO:0004679 - AMP-activated protein kinase activity [Evidence IMP] [PMID 2557546]; GO_function: GO:0004679 - AMP-activated protein kinase activity [Evidence IMP] [PMID 7913470]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0004672 - protein kinase activity [Evidence IEA]; GO_function: GO:0004672 - protein kinase activity [Evidence IDA] [PMID 16319894]; GO_function: GO:0004674 - protein serine/threonine kinase activity [Evidence IEA,IEA]; GO_function: GO:0004674 - protein serine/threonine kinase activity [Evidence IDA] [PMID 11486005]; GO_function: GO:0004674 - protein serine/threonine kinase activity [Evidence IDA] [PMID 2557546]; GO_function: GO:0004674 - protein serine/threonine kinase activity [Evidence IDA] [PMID 7913470]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016772 - transferase activity, transferring phosphorus-containing groups [Evidence IEA]; GO_process: GO:0042710 - biofilm formation [Evidence IMP] [PMID 12024013]; GO_process: GO:0005975 - carbohydrate metabolic process [Evidence IEA]; GO_process: GO:0007155 - cell adhesion [Evidence IMP] [PMID 12556493]; GO_process: GO:0006995 - cellular response to nitrogen starvation [Evidence IDA] [PMID 12024013]; GO_process: GO:0071940 - fungal-type cell wall assembly [Evidence IMP] [PMID 24486034]; GO_process: GO:0001403 - invasive growth in response to glucose limitation [Evidence IMP] [PMID 11095711]; GO_process: GO:0001403 - invasive growth in response to glucose limitation [Evidence IMP] [PMID 12556493]; GO_process: GO:0017148 - negative regulation of translation [Evidence IGI,IMP] [PMID 18955495]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; GO_process: GO:1900436 - positive regulation of filamentous growth of a population of unicellular organisms in response to starvation [Evidence IMP] [PMID 22904036]; GO_process: GO:0045722 - positive regulation of gluconeogenesis [Evidence IMP] [PMID 8628258]; GO_process: GO:0045722 - positive regulation of gluconeogenesis [Evidence IMP] [PMID 8710504]; GO_process: GO:0045722 - positive regulation of gluconeogenesis [Evidence IMP] [PMID 9111319]; GO_process: GO:0006468 - protein phosphorylation [Evidence IEA]; GO_process: GO:0006468 - protein phosphorylation [Evidence IDA] [PMID 11486005]; GO_process: GO:0006468 - protein phosphorylation [Evidence IDA] [PMID 16319894]; GO_process: GO:0007124 - pseudohyphal growth [Evidence IMP] [PMID 12024013]; GO_process: GO:0006109 - regulation of carbohydrate metabolic process [Evidence IGI,IPI] [PMID 12167649]; GO_process: GO:0001302 - replicative cell aging [Evidence IGI,IMP] [PMID 10921902]; AMP-activated serine/threonine-protein kinase catalytic subunit SNF1 131217 SNF1 30036859 SNF1 Sugiyamaella lignohabitans AMP-activated serine/threonine-protein kinase catalytic subunit SNF1 XP_018734300.1 129232 D 796027 CDS AWJ20_48 30036970 complement(131400..132899) A 1 NC_031672.1 uncharacterized protein 132899 30036970 AWJ20_48 Sugiyamaella lignohabitans uncharacterized protein XP_018734301.1 131400 R 796027 CDS AWJ20_49 30037081 135364..136401 A 1 NC_031672.1 Member of the Sir2 family of NAD(+)-dependent protein deacetylases; involved along with Hst4p in telomeric silencing, cell cycle progression, radiation resistance, genomic stability and short-chain fatty acid metabolism; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IC] [PMID 12242223]; GO_function: GO:0003677 - DNA binding [Evidence ISS] [PMID 7498786]; GO_function: GO:0070403 - NAD+ binding [Evidence IEA]; GO_function: GO:0004407 - histone deacetylase activity [Evidence IMP] [PMID 16815704]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_process: GO:0006348 - chromatin silencing at telomere [Evidence IGI] [PMID 7498786]; GO_process: GO:0016575 - histone deacetylation [Evidence IMP] [PMID 16815704]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0046459 - short-chain fatty acid metabolic process [Evidence IMP] [PMID 12618394]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Hst3p 136401 HST3 30037081 HST3 Sugiyamaella lignohabitans Hst3p XP_018734302.1 135364 D 796027 CDS AWJ20_50 30037193 137523..138677 A 1 NC_031672.1 Fe(II)-dependent sulfonate/alpha-ketoglutarate dioxygenase; involved in sulfonate catabolism for use as a sulfur source; contains sequence that resembles a J domain (typified by the E. coli DnaJ protein); induced by sulphur starvation; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0051213 - dioxygenase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0000907 - sulfonate dioxygenase activity [Evidence IDA] [PMID 10482536]; GO_process: GO:0046306 - alkanesulfonate catabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0044273 - sulfur compound catabolic process [Evidence IMP] [PMID 10482536]; Jlp1p 138677 JLP1 30037193 JLP1 Sugiyamaella lignohabitans Jlp1p XP_018734303.1 137523 D 796027 CDS AWJ20_51 30037304 138819..139469 A 1 NC_031672.1 uncharacterized protein 139469 30037304 AWJ20_51 Sugiyamaella lignohabitans uncharacterized protein XP_018734304.1 138819 D 796027 CDS AWJ20_52 30037415 complement(151135..154011) A 1 NC_031672.1 uncharacterized protein 154011 30037415 AWJ20_52 Sugiyamaella lignohabitans uncharacterized protein XP_018734305.1 151135 R 796027 CDS AWJ20_53 30037525 163382..164872 A 1 NC_031672.1 Nuclear type II J heat shock protein of the E. coli dnaJ family; contains a leucine zipper-like motif, binds to non-native substrates for presentation to Ssa3p, may function during protein translocation, assembly and disassembly; GO_component: GO:0005634 - nucleus [Evidence TAS] [PMID 15170475]; GO_function: GO:0051087 - chaperone binding [Evidence ISS] [PMID 8045411]; GO_process: GO:0006457 - protein folding [Evidence ISS] [PMID 8045411]; Caj1p 164872 CAJ1 30037525 CAJ1 Sugiyamaella lignohabitans Caj1p XP_018734306.1 163382 D 796027 CDS AWJ20_54 30037583 complement(165416..166933) A 1 NC_031672.1 serine/threonine protein kinase YCK2 166933 YCK2 30037583 YCK2 Sugiyamaella lignohabitans serine/threonine protein kinase YCK2 XP_018734307.1 165416 R 796027 CDS AWJ20_55 30037594 complement(177717..178733) A 1 NC_031672.1 uncharacterized protein 178733 30037594 AWJ20_55 Sugiyamaella lignohabitans uncharacterized protein XP_018734308.1 177717 R 796027 CDS AWJ20_56 30037605 181958..182758 A 1 NC_031672.1 uncharacterized protein 182758 30037605 AWJ20_56 Sugiyamaella lignohabitans uncharacterized protein XP_018734309.1 181958 D 796027 CDS AWJ20_57 30037616 183394..188358 A 1 NC_031672.1 uncharacterized protein 188358 30037616 AWJ20_57 Sugiyamaella lignohabitans uncharacterized protein XP_018734310.1 183394 D 796027 CDS AWJ20_58 30037627 191991..192554 A 1 NC_031672.1 Mitochondrial intermembrane space protein; involved in phospholipid metabolism; has role in regulation of phospholipid metabolism by inhibiting conversion of phosphatidylethanolamine to phosphatidylcholine; null mutant has defects in mitochondrial morphology; similar to Ups1p, Ups3p and to human PRELI; UPS2 has a paralog, UPS3, that arose from the whole genome duplication; GO_component: GO:0031314 - extrinsic component of mitochondrial inner membrane [Evidence IDA] [PMID 19506038]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IEA]; GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IDA] [PMID 19506038]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0032048 - cardiolipin metabolic process [Evidence IGI] [PMID 19506038]; GO_process: GO:0042407 - cristae formation [Evidence IGI,IMP] [PMID 19221197]; GO_process: GO:2001246 - negative regulation of phosphatidylcholine biosynthetic process [Evidence IMP] [PMID 22403410]; GO_process: GO:0046337 - phosphatidylethanolamine metabolic process [Evidence IGI,IMP] [PMID 19221197]; Ups2p 192554 UPS2 30037627 UPS2 Sugiyamaella lignohabitans Ups2p XP_018734311.1 191991 D 796027 CDS AWJ20_59 30037638 complement(193004..194410) A 1 NC_031672.1 Mitochondrial asparaginyl-tRNA synthetase; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IMP] [PMID 9030748]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004812 - aminoacyl-tRNA ligase activity [Evidence IEA,IEA]; GO_function: GO:0004816 - asparagine-tRNA ligase activity [Evidence IEA,IEA]; GO_function: GO:0004816 - asparagine-tRNA ligase activity [Evidence IDA] [PMID 9030748]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_process: GO:0006421 - asparaginyl-tRNA aminoacylation [Evidence IEA]; GO_process: GO:0006421 - asparaginyl-tRNA aminoacylation [Evidence IDA] [PMID 9030748]; GO_process: GO:0070145 - mitochondrial asparaginyl-tRNA aminoacylation [Evidence IMP] [PMID 9030748]; GO_process: GO:0006418 - tRNA aminoacylation for protein translation [Evidence IEA]; GO_process: GO:0006412 - translation [Evidence IEA]; asparagine--tRNA ligase SLM5 194410 SLM5 30037638 SLM5 Sugiyamaella lignohabitans asparagine--tRNA ligase SLM5 XP_018734312.1 193004 R 796027 CDS AWJ20_60 30037650 198315..200189 A 1 NC_031672.1 Phospholipase B (lysophospholipase) involved in lipid metabolism; required for efficient acyl chain remodeling of newly synthesized phosphatidylethanolamine-derived phosphatidylcholine; required for deacylation of phosphatidylcholine and phosphatidylethanolamine but not phosphatidylinositol; PLB1 has a paralog, PLB3, that arose from the whole genome duplication; GO_component: GO:0031225 - anchored component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0042597 - periplasmic space [Evidence IDA] [PMID 8051052]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 16622836]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 8051052]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0004622 - lysophospholipase activity [Evidence IEA]; GO_function: GO:0004622 - lysophospholipase activity [Evidence IMP] [PMID 8051052]; GO_function: GO:0004620 - phospholipase activity [Evidence IEA]; GO_process: GO:0006650 - glycerophospholipid metabolic process [Evidence IMP] [PMID 8051052]; GO_process: GO:0016042 - lipid catabolic process [Evidence IEA]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0036151 - phosphatidylcholine acyl-chain remodeling [Evidence IMP] [PMID 23501167]; GO_process: GO:0009395 - phospholipid catabolic process [Evidence IEA]; Plb1p 200189 PLB1 30037650 PLB1 Sugiyamaella lignohabitans Plb1p XP_018734313.1 198315 D 796027 CDS AWJ20_61 30037661 complement(200384..201934) A 1 NC_031672.1 Putative glycoside hydrolase of the mitochondrial intermembrane space; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IDA] [PMID 22984289]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016798 - hydrolase activity, acting on glycosyl bonds [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0005975 - carbohydrate metabolic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; 17-beta-hydroxysteroid dehydrogenase-like protein 201934 30037661 AWJ20_61 Sugiyamaella lignohabitans 17-beta-hydroxysteroid dehydrogenase-like protein XP_018734314.1 200384 R 796027 CDS AWJ20_62 30037672 complement(203639..205672) A 1 NC_031672.1 Dynamin-like GTPase required for vacuolar sorting; also involved in actin cytoskeleton organization, endocytosis, late Golgi-retention of some proteins, regulation of peroxisome biogenesis; GO_component: GO:0030479 - actin cortical patch [Evidence IDA] [PMID 20841380]; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA,IEA]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 15550248]; GO_component: GO:0005874 - microtubule [Evidence IEA]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IDA] [PMID 16407407]; GO_component: GO:0005777 - peroxisome [Evidence IDA] [PMID 16520372]; GO_function: GO:0005525 - GTP binding [Evidence IEA,IEA]; GO_function: GO:0003924 - GTPase activity [Evidence IEA]; GO_function: GO:0003924 - GTPase activity [Evidence IDA,ISS] [PMID 8299420]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006184 - GTP catabolic process [Evidence IEA]; GO_process: GO:0030036 - actin cytoskeleton organization [Evidence IGI,IMP,IPI] [PMID 15265985]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0006897 - endocytosis [Evidence IGI,IMP] [PMID 20841380]; GO_process: GO:0060988 - lipid tube assembly [Evidence IDA] [PMID 20841380]; GO_process: GO:0007126 - meiotic nuclear division [Evidence IEA]; GO_process: GO:0016559 - peroxisome fission [Evidence IMP] [PMID 18445678]; GO_process: GO:0007031 - peroxisome organization [Evidence IDA,IGI,IMP] [PMID 12707309]; GO_process: GO:0045053 - protein retention in Golgi apparatus [Evidence IMP] [PMID 8649377]; GO_process: GO:0006623 - protein targeting to vacuole [Evidence IMP] [PMID 8299420]; GO_process: GO:0007034 - vacuolar transport [Evidence IMP] [PMID 8299420]; dynamin-like GTPase VPS1 205672 VPS1 30037672 VPS1 Sugiyamaella lignohabitans dynamin-like GTPase VPS1 XP_018734315.1 203639 R 796027 CDS AWJ20_63 30037683 complement(206199..208523) A 1 NC_031672.1 Actin assembly factor; C-terminal WCA domain activates Arp2/3 complex-mediated nucleation of branched actin filaments and a polyproline domain which can nucleate actin filaments independent of Arp2/3; mutants are defective in actin cytoskeleton dependent processes such as: endocytosis, bud site selection and cytokinesis; localizes with the Arp2/3 complex to actin cortical patches; homolog of the Wiskott-Aldrich Syndrome protein (WASP), implicated in severe immunodeficiency; GO_component: GO:0030479 - actin cortical patch [Evidence IEA]; GO_component: GO:0030479 - actin cortical patch [Evidence IDA] [PMID 10512884]; GO_component: GO:0030479 - actin cortical patch [Evidence IDA] [PMID 9024694]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 19053807]; GO_function: GO:0003779 - actin binding [Evidence IEA]; GO_function: GO:0003779 - actin binding [Evidence IDA] [PMID 10512884]; GO_function: GO:0003779 - actin binding [Evidence IDA,IPI] [PMID 23290554]; GO_process: GO:0051666 - actin cortical patch localization [Evidence IGI,IMP] [PMID 18177206]; GO_process: GO:0007015 - actin filament organization [Evidence IEA]; GO_process: GO:0007015 - actin filament organization [Evidence IDA] [PMID 9214384]; GO_process: GO:0030041 - actin filament polymerization [Evidence IDA] [PMID 22973053]; GO_process: GO:0045010 - actin nucleation [Evidence IDA] [PMID 23290554]; GO_process: GO:0006897 - endocytosis [Evidence IEA]; GO_process: GO:2000601 - positive regulation of Arp2/3 complex-mediated actin nucleation [Evidence IEA]; GO_process: GO:2000601 - positive regulation of Arp2/3 complex-mediated actin nucleation [Evidence IDA] [PMID 10322115]; GO_process: GO:0032233 - positive regulation of actin filament bundle assembly [Evidence IDA] [PMID 19158382]; Las17p 208523 LAS17 30037683 LAS17 Sugiyamaella lignohabitans Las17p XP_018734316.1 206199 R 796027 CDS AWJ20_64 30037694 complement(210307..211734) A 1 NC_031672.1 uncharacterized protein 211734 30037694 AWJ20_64 Sugiyamaella lignohabitans uncharacterized protein XP_018734317.1 210307 R 796027 CDS AWJ20_65 30037705 complement(215475..216728) A 1 NC_031672.1 uncharacterized protein 216728 30037705 AWJ20_65 Sugiyamaella lignohabitans uncharacterized protein XP_018734318.1 215475 R 796027 CDS AWJ20_66 30037716 complement(217960..219288) A 1 NC_031672.1 Component of the CCR4-NOT transcriptional complex; evolutionarily conserved; involved in controlling mRNA initiation, elongation, and degradation; binds Cdc39p; GO_component: GO:0030015 - CCR4-NOT core complex [Evidence IPI] [PMID 11733989]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0032968 - positive regulation of transcription elongation from RNA polymerase II promoter [Evidence IDA,IPI] [PMID 21406554]; GO_process: GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence IPI] [PMID 11733989]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; CCR4-NOT core subunit CAF40 219288 CAF40 30037716 CAF40 Sugiyamaella lignohabitans CCR4-NOT core subunit CAF40 XP_018734319.1 217960 R 796027 CDS AWJ20_67 30037727 227115..228152 A 1 NC_031672.1 serine/threonine protein kinase HRR25 228152 HRR25 30037727 HRR25 Sugiyamaella lignohabitans serine/threonine protein kinase HRR25 XP_018734320.1 227115 D 796027 CDS AWJ20_68 30037738 228875..230263 A 1 NC_031672.1 NADH diphosphatase (pyrophosphatase); hydrolyzes the pyrophosphate linkage in NADH and related nucleotides; localizes to peroxisomes; nudix hydrolase family member; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005777 - peroxisome [Evidence IDA] [PMID 11361135]; GO_function: GO:0000210 - NAD+ diphosphatase activity [Evidence IEA]; GO_function: GO:0000210 - NAD+ diphosphatase activity [Evidence IDA] [PMID 11361135]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA,IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA,IEA]; GO_process: GO:0006734 - NADH metabolic process [Evidence IDA] [PMID 11361135]; NAD(+) diphosphatase 230263 NPY1 30037738 NPY1 Sugiyamaella lignohabitans NAD(+) diphosphatase XP_018734321.1 228875 D 796027 CDS AWJ20_69 30037749 233185..235227 A 1 NC_031672.1 Phosphatidylinositol-4-phosphate 5-kinase; involved in actin cytoskeleton organization and cell morphogenesis; multicopy suppressor of stt4 mutation; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9624177]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 9624177]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IEA]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IDA] [PMID 9624177]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IDA] [PMID 9624178]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016307 - phosphatidylinositol phosphate kinase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0031321 - ascospore-type prospore assembly [Evidence IGI] [PMID 19502581]; GO_process: GO:0046488 - phosphatidylinositol metabolic process [Evidence IEA]; GO_process: GO:0046854 - phosphatidylinositol phosphorylation [Evidence IDA] [PMID 9624177]; GO_process: GO:0046854 - phosphatidylinositol phosphorylation [Evidence IDA] [PMID 9624178]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; 1-phosphatidylinositol-4-phosphate 5-kinase 235227 MSS4 30037749 MSS4 Sugiyamaella lignohabitans 1-phosphatidylinositol-4-phosphate 5-kinase XP_018734322.1 233185 D 796027 CDS AWJ20_70 30037761 complement(237728..238030) A 1 NC_031672.1 Cytoplasmic glyoxalase II; catalyzes the hydrolysis of S-D-lactoylglutathione into glutathione and D-lactate; GLO2 has a paralog, GLO4, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 9261170]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA,IEA]; GO_function: GO:0004416 - hydroxyacylglutathione hydrolase activity [Evidence IEA,IEA]; GO_function: GO:0004416 - hydroxyacylglutathione hydrolase activity [Evidence IDA,IGI,IMP] [PMID 9261170]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0006750 - glutathione biosynthetic process [Evidence IEA]; GO_process: GO:0019243 - methylglyoxal catabolic process to D-lactate [Evidence IDA,IGI,IMP] [PMID 9261170]; hydroxyacylglutathione hydrolase GLO2 238030 GLO2 30037761 GLO2 Sugiyamaella lignohabitans hydroxyacylglutathione hydrolase GLO2 XP_018734323.1 237728 R 796027 CDS AWJ20_71 30037772 240865..241452 A 1 NC_031672.1 glycerophosphoryl diester phosphodiesterase (predicted) 241452 30037772 AWJ20_71 Sugiyamaella lignohabitans glycerophosphoryl diester phosphodiesterase (predicted) XP_018734324.1 240865 D 796027 CDS AWJ20_72 30037783 242359..244443 A 1 NC_031672.1 protein-transporting protein SEC63 244443 SEC63 30037783 SEC63 Sugiyamaella lignohabitans protein-transporting protein SEC63 XP_018734325.1 242359 D 796027 CDS AWJ20_73 30037794 complement(245468..246964) A 1 NC_031672.1 Ubiquitin-binding protein; contains a CUE domain that binds ubiquitin, which may facilitate intramolecular monoubiquitination; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm in a punctate pattern; CUE5 has a paralog, DON1, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0043130 - ubiquitin binding [Evidence IDA] [PMID 12628920]; GO_process: GO:0008150 - biological_process [Evidence ND]; Cue5p 246964 CUE5 30037794 CUE5 Sugiyamaella lignohabitans Cue5p XP_018734326.1 245468 R 796027 CDS AWJ20_74 30037805 248059..249867 A 1 NC_031672.1 Poly(A)RNA binding protein involved in nuclear mRNA export; component of the nuclear pore; ortholog of human TAP; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 10684247]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0042272 - nuclear RNA export factor complex [Evidence IPI] [PMID 9774696]; GO_component: GO:0005643 - nuclear pore [Evidence IDA] [PMID 10684247]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 23212245]; GO_function: GO:0003723 - RNA binding [Evidence IDA] [PMID 12524544]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_function: GO:0005515 - protein binding [Evidence IPI] [PMID 12411502]; GO_process: GO:0006406 - mRNA export from nucleus [Evidence IMP] [PMID 10722667]; GO_process: GO:0051028 - mRNA transport [Evidence IEA,IEA]; GO_process: GO:0000055 - ribosomal large subunit export from nucleus [Evidence IGI,IMP] [PMID 17434126]; GO_process: GO:0000056 - ribosomal small subunit export from nucleus [Evidence IMP] [PMID 22956913]; GO_process: GO:0006810 - transport [Evidence IEA]; Mex67p 249867 MEX67 30037805 MEX67 Sugiyamaella lignohabitans Mex67p XP_018734327.1 248059 D 796027 CDS AWJ20_75 30037816 complement(251796..253397) A 1 NC_031672.1 C-22 sterol desaturase; a cytochrome P450 enzyme that catalyzes the formation of the C-22(23) double bond in the sterol side chain in ergosterol biosynthesis; may be a target of azole antifungal drugs; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 14562095]; GO_function: GO:0000249 - C-22 sterol desaturase activity [Evidence IDA] [PMID 8543054]; GO_function: GO:0020037 - heme binding [Evidence IEA]; GO_function: GO:0005506 - iron ion binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004497 - monooxygenase activity [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [Evidence IEA]; GO_process: GO:0006696 - ergosterol biosynthetic process [Evidence IDA] [PMID 8543054]; GO_process: GO:0006696 - ergosterol biosynthetic process [Evidence IMP] [PMID 8635732]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0006694 - steroid biosynthetic process [Evidence IEA]; GO_process: GO:0008202 - steroid metabolic process [Evidence IEA]; GO_process: GO:0016126 - sterol biosynthetic process [Evidence IEA,IEA]; C-22 sterol desaturase 253397 ERG5 30037816 ERG5 Sugiyamaella lignohabitans C-22 sterol desaturase XP_018734328.1 251796 R 796027 CDS AWJ20_76 30037827 complement(255830..256993) A 1 NC_031672.1 GABA (gamma-aminobutyrate) permease; serves as a GABA transport protein involved in the utilization of GABA as a nitrogen source; catalyzes the transport of putrescine and delta-aminolevulinic acid (ALA); localized to the vacuolar membrane; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 14985124]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0015171 - amino acid transmembrane transporter activity [Evidence IEA]; GO_function: GO:0015495 - gamma-aminobutyric acid:proton symporter activity [Evidence IGI] [PMID 8455553]; GO_function: GO:0015489 - putrescine transmembrane transporter activity [Evidence IGI] [PMID 14985124]; GO_process: GO:0003333 - amino acid transmembrane transport [Evidence IEA]; GO_process: GO:0006865 - amino acid transport [Evidence IEA]; GO_process: GO:0015812 - gamma-aminobutyric acid transport [Evidence IGI] [PMID 14985124]; GO_process: GO:0015812 - gamma-aminobutyric acid transport [Evidence IEP,IGI] [PMID 8455553]; GO_process: GO:0015847 - putrescine transport [Evidence IGI] [PMID 14985124]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IGI] [PMID 8455553]; GO_process: GO:0006810 - transport [Evidence IEA]; Uga4p 256993 UGA4 30037827 UGA4 Sugiyamaella lignohabitans Uga4p XP_018734329.1 255830 R 796027 CDS AWJ20_77 30037838 259206..260735 A 1 NC_031672.1 uncharacterized protein 260735 30037838 AWJ20_77 Sugiyamaella lignohabitans uncharacterized protein XP_018734330.1 259206 D 796027 CDS AWJ20_78 30037849 262714..264360 A 1 NC_031672.1 N-glycosylated integral membrane protein of the ER and plasma membrane; functions as a stretch-activated Ca2+-permeable cation channel required for Ca2+ influx stimulated by pheromone; interacts with Cch1p; forms an oligomer; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA,IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 14729456]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 10958666]; GO_function: GO:0005262 - calcium channel activity [Evidence IEA]; GO_function: GO:0005262 - calcium channel activity [Evidence IMP] [PMID 10958666]; GO_function: GO:0005262 - calcium channel activity [Evidence IMP] [PMID 9343395]; GO_function: GO:0015275 - stretch-activated, cation-selective, calcium channel activity [Evidence IDA] [PMID 10436155]; GO_process: GO:0070588 - calcium ion transmembrane transport [Evidence IEA]; GO_process: GO:0006816 - calcium ion transport [Evidence IEA]; GO_process: GO:0006816 - calcium ion transport [Evidence IDA] [PMID 10958666]; GO_process: GO:0006811 - ion transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Mid1p 264360 MID1 30037849 MID1 Sugiyamaella lignohabitans Mid1p XP_018734331.1 262714 D 796027 CDS AWJ20_79 30037860 complement(264410..265621) A 1 NC_031672.1 Pseudouridine synthase; catalyzes only the formation of pseudouridine-55 (Psi55), a highly conserved tRNA modification, in mitochondrial and cytoplasmic tRNAs; PUS4 overexpression leads to translational derepression of GCN4 (Gcd- phenotype); GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IMP] [PMID 9358157]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IMP] [PMID 9358157]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0016853 - isomerase activity [Evidence IEA]; GO_function: GO:0009982 - pseudouridine synthase activity [Evidence IEA]; GO_function: GO:0009982 - pseudouridine synthase activity [Evidence IDA,IGI] [PMID 9358157]; GO_process: GO:0009451 - RNA modification [Evidence IEA]; GO_process: GO:0006396 - RNA processing [Evidence IEA]; GO_process: GO:0001522 - pseudouridine synthesis [Evidence IEA]; GO_process: GO:0006400 - tRNA modification [Evidence IDA] [PMID 9358157]; GO_process: GO:0008033 - tRNA processing [Evidence IEA]; pseudouridine synthase PUS4 265621 PUS4 30037860 PUS4 Sugiyamaella lignohabitans pseudouridine synthase PUS4 XP_018734332.1 264410 R 796027 CDS AWJ20_80 30037872 complement(265857..266546) A 1 NC_031672.1 Palmitoyltransferase subunit; this complex adds a palmitoyl lipid moiety to heterolipidated substrates such as Ras1p and Ras2p through a thioester linkage; palmitoylation is required for Ras2p membrane localization; Palmitoyltransferase is composed of Shr5p and Erf2; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0031211 - endoplasmic reticulum palmitoyltransferase complex [Evidence IPI] [PMID 12193598]; GO_component: GO:0042406 - extrinsic component of endoplasmic reticulum membrane [Evidence IDA] [PMID 12379641]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0016409 - palmitoyltransferase activity [Evidence IDA] [PMID 12193598]; GO_process: GO:0018345 - protein palmitoylation [Evidence IDA] [PMID 12193598]; GO_process: GO:0018345 - protein palmitoylation [Evidence IMP] [PMID 16751107]; GO_process: GO:0006612 - protein targeting to membrane [Evidence IMP] [PMID 7532279]; Shr5p 266546 SHR5 30037872 SHR5 Sugiyamaella lignohabitans Shr5p XP_018734333.1 265857 R 796027 CDS AWJ20_81 30037883 267532..270087 A 1 NC_031672.1 Mitochondrial inner membrane half-type ABC transporter; required for respiratory growth at high temperature; localizes to vacuole membrane in response to H2O2; similar to human TAP1 and TAP2 implicated in bare lymphocyte syndrome and Wegener-like granulomatosis; GO_component: GO:0016021 - integral component of membrane [Evidence IBA,IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IDA] [PMID 11251115]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005886 - plasma membrane [Evidence IRD]; GO_component: GO:0005774 - vacuolar membrane [Evidence IDA] [PMID 23509072]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016887 - ATPase activity [Evidence IEA]; GO_function: GO:0042626 - ATPase activity, coupled to transmembrane movement of substances [Evidence IEA]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_function: GO:0015421 - oligopeptide-transporting ATPase activity [Evidence IBA]; GO_function: GO:0015421 - oligopeptide-transporting ATPase activity [Evidence ISA] [PMID 11251115]; GO_function: GO:0005215 - transporter activity [Evidence IEA]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0070301 - cellular response to hydrogen peroxide [Evidence IDA] [PMID 23509072]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0090374 - oligopeptide export from mitochondrion [Evidence ISA] [PMID 11251115]; GO_process: GO:0006857 - oligopeptide transport [Evidence ISA] [PMID 11251115]; GO_process: GO:0055085 - transmembrane transport [Evidence IBA,IEA]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; ATP-binding cassette permease MDL2 270087 MDL2 30037883 MDL2 Sugiyamaella lignohabitans ATP-binding cassette permease MDL2 XP_018734334.1 267532 D 796027 CDS AWJ20_82 30037894 270632..272203 A 1 NC_031672.1 Plasma membrane transporter for choline, ethanolamine, and carnitine; involved in the uptake of nitrogen mustard and the uptake of glycine betaine during hypersaline stress; co-regulated with phospholipid biosynthetic genes and negatively regulated by choline and myo-inositol; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence ISS] [PMID 2203793]; GO_function: GO:1901235 - (R)-carnitine transmembrane transporter activity [Evidence IMP] [PMID 23755272]; GO_function: GO:0015171 - amino acid transmembrane transporter activity [Evidence IEA]; GO_function: GO:0015220 - choline transmembrane transporter activity [Evidence IMP] [PMID 2203793]; GO_function: GO:0015220 - choline transmembrane transporter activity [Evidence IGI] [PMID 3514579]; GO_function: GO:0034228 - ethanolamine transmembrane transporter activity [Evidence IGI] [PMID 3514579]; GO_process: GO:1900749 - (R)-carnitine transport [Evidence IMP] [PMID 23755272]; GO_process: GO:0003333 - amino acid transmembrane transport [Evidence IEA]; GO_process: GO:0006865 - amino acid transport [Evidence IEA,IEA]; GO_process: GO:0015871 - choline transport [Evidence IMP] [PMID 2203793]; GO_process: GO:0015871 - choline transport [Evidence IGI] [PMID 3514579]; GO_process: GO:0034229 - ethanolamine transport [Evidence IGI] [PMID 3514579]; GO_process: GO:0031460 - glycine betaine transport [Evidence IMP] [PMID 16487344]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Hnm1p 272203 HNM1 30037894 HNM1 Sugiyamaella lignohabitans Hnm1p XP_018734335.1 270632 D 796027 CDS AWJ20_83 30037905 277639..279300 A 1 NC_031672.1 Plasma membrane protein of the Major Facilitator Superfamily (MFS); involved in amino acid uptake and drug sensitivity; VBA5 has a paralog, VBA3, that arose from a segmental duplication; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 23047103]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0022857 - transmembrane transporter activity [Evidence IEA]; GO_process: GO:0006865 - amino acid transport [Evidence IEA]; GO_process: GO:0015809 - arginine transport [Evidence IGI,IMP] [PMID 23047103]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Vba5p 279300 VBA5 30037905 VBA5 Sugiyamaella lignohabitans Vba5p XP_018734336.1 277639 D 796027 CDS AWJ20_84 30037916 281146..283800 A 1 NC_031672.1 Protein involved in programmed cell death; mutant shows resistance to cell death induced by amiodarone or intracellular acidification; YSP2 has a paralog, YHR080C, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 24390141]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0031966 - mitochondrial membrane [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16962064]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006915 - apoptotic process [Evidence IEA]; GO_process: GO:0006915 - apoptotic process [Evidence IMP] [PMID 16962064]; Ysp2p 283800 YSP2 30037916 YSP2 Sugiyamaella lignohabitans Ysp2p XP_018734337.1 281146 D 796027 CDS AWJ20_85 30037927 complement(283843..284679) A 1 NC_031672.1 uncharacterized protein 284679 30037927 AWJ20_85 Sugiyamaella lignohabitans uncharacterized protein XP_018734338.1 283843 R 796027 CDS AWJ20_86 30037938 285576..287024 A 1 NC_031672.1 uncharacterized protein 287024 30037938 AWJ20_86 Sugiyamaella lignohabitans uncharacterized protein XP_018734339.1 285576 D 796027 CDS AWJ20_88 30037960 complement(290253..291464) A 1 NC_031672.1 3-hydroxy-3-methylglutaryl-CoA (HMG-CoA) synthase; catalyzes the formation of HMG-CoA from acetyl-CoA and acetoacetyl-CoA; involved in the second step in mevalonate biosynthesis; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0004421 - hydroxymethylglutaryl-CoA synthase activity [Evidence IEA,IEA]; GO_function: GO:0004421 - hydroxymethylglutaryl-CoA synthase activity [Evidence IMP] [PMID 6148937]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006696 - ergosterol biosynthetic process [Evidence IMP] [PMID 6148937]; GO_process: GO:0008299 - isoprenoid biosynthetic process [Evidence IEA]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0006694 - steroid biosynthetic process [Evidence IEA]; GO_process: GO:0008202 - steroid metabolic process [Evidence IEA]; GO_process: GO:0016126 - sterol biosynthetic process [Evidence IEA]; hydroxymethylglutaryl-CoA synthase 291464 ERG13 30037960 ERG13 Sugiyamaella lignohabitans hydroxymethylglutaryl-CoA synthase XP_018734340.1 290253 R 796027 CDS AWJ20_89 30037971 295364..296728 A 1 NC_031672.1 Protein involved in the regulation of endocytosis; transiently recruited to actin cortical patches in a SLA1-dependent manner after late coat component assembly; GFP-fusion protein localizes to the periphery, cytoplasm, bud, and bud neck; GO_component: GO:0030479 - actin cortical patch [Evidence IDA] [PMID 19506040]; GO_component: GO:0005933 - cellular bud [Evidence IEA]; GO_component: GO:0005933 - cellular bud [Evidence IDA] [PMID 14562095]; GO_component: GO:0005935 - cellular bud neck [Evidence IEA]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006897 - endocytosis [Evidence IMP] [PMID 19506040]; Ldb17p 296728 LDB17 30037971 LDB17 Sugiyamaella lignohabitans Ldb17p XP_018734341.1 295364 D 796027 CDS AWJ20_90 30037983 complement(296823..297761) A 1 NC_031672.1 Glyoxylate reductase; acts on glyoxylate and hydroxypyruvate substrates; YPL113C is not an essential gene; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0048037 - cofactor binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor [Evidence IEA]; GO_function: GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor [Evidence IMP] [PMID 17173333]; GO_process: GO:0008152 - metabolic process [Evidence IMP] [PMID 17173333]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; glyoxylate reductase 297761 30037983 AWJ20_90 Sugiyamaella lignohabitans glyoxylate reductase XP_018734342.1 296823 R 796027 CDS AWJ20_91 30037994 300065..300874 A 1 NC_031672.1 uncharacterized protein 300874 30037994 AWJ20_91 Sugiyamaella lignohabitans uncharacterized protein XP_018734343.1 300065 D 796027 CDS AWJ20_92 30038005 complement(300953..303595) A 1 NC_031672.1 F-box protein involved in recycling endocytosed proteins; involved in recycling plasma membrane proteins internalized by endocytosis; localized to sites of polarized growth; direct interaction with C-terminal cytoplasmic region of Drs2p plays an important role for Drs2p function in endocytic recycling pathway; GO_component: GO:0005794 - Golgi apparatus [Evidence IDA] [PMID 15537705]; GO_component: GO:0051286 - cell tip [Evidence IEA]; GO_component: GO:0005935 - cellular bud neck [Evidence IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005768 - endosome [Evidence IDA] [PMID 15537705]; GO_component: GO:0030427 - site of polarized growth [Evidence IDA] [PMID 11287615]; GO_function: GO:0000149 - SNARE binding [Evidence IMP,IPI] [PMID 11287615]; GO_function: GO:0000149 - SNARE binding [Evidence IPI] [PMID 15537705]; GO_process: GO:0034498 - early endosome to Golgi transport [Evidence IMP] [PMID 15537705]; GO_process: GO:0032456 - endocytic recycling [Evidence IMP] [PMID 24272750]; GO_process: GO:0006897 - endocytosis [Evidence IMP] [PMID 10769031]; GO_process: GO:0006897 - endocytosis [Evidence IMP] [PMID 11378903]; GO_process: GO:0006887 - exocytosis [Evidence IEA]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0048278 - vesicle docking [Evidence IEA]; Rcy1p 303595 RCY1 30038005 RCY1 Sugiyamaella lignohabitans Rcy1p XP_018734344.1 300953 R 796027 CDS AWJ20_93 30038016 303972..306851 A 1 NC_031672.1 Essential nuclear protein; required for biogenesis of the small ribosomal subunit; has a possible role in the osmoregulatory glycerol response; putative homolog of human NOM1 which is implicated in acute myeloid leukemia; GO_component: GO:0097078 - FAl1-SGD1 complex [Evidence IPI] [PMID 21576267]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 11042259]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA,ISS] [PMID 11042259]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006972 - hyperosmotic response [Evidence IGI] [PMID 11042259]; GO_process: GO:0006972 - hyperosmotic response [Evidence IGI] [PMID 12073033]; GO_process: GO:0042274 - ribosomal small subunit biogenesis [Evidence IMP] [PMID 19806183]; Sgd1p 306851 SGD1 30038016 SGD1 Sugiyamaella lignohabitans Sgd1p XP_018734345.1 303972 D 796027 CDS AWJ20_94 30038027 complement(306924..307952) A 1 NC_031672.1 Subunit of the CoA-Synthesizing Protein Complex (CoA-SPC); subunits of this complex are: Cab2p, Cab3p, Cab4p, Cab5p, Sis2p and Vhs3p; probable pantetheine-phosphate adenylyltransferase (PPAT); PPAT catalyzes the fourth step in the biosynthesis of coenzyme A from pantothenate; null mutant lethality is complemented by E. coli coaD (encoding PPAT); widely conserved; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14690591]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14690591]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016779 - nucleotidyltransferase activity [Evidence IEA]; GO_function: GO:0004595 - pantetheine-phosphate adenylyltransferase activity [Evidence IEA]; GO_function: GO:0004595 - pantetheine-phosphate adenylyltransferase activity [Evidence ISS] [PMID 11923312]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0009058 - biosynthetic process [Evidence IEA]; GO_process: GO:0015937 - coenzyme A biosynthetic process [Evidence IEA]; GO_process: GO:0015937 - coenzyme A biosynthetic process [Evidence ISS] [PMID 11923312]; GO_process: GO:0015937 - coenzyme A biosynthetic process [Evidence IGI] [PMID 19266201]; putative pantetheine-phosphate adenylyltransferase 307952 CAB4 30038027 CAB4 Sugiyamaella lignohabitans putative pantetheine-phosphate adenylyltransferase XP_018734346.1 306924 R 796027 CDS AWJ20_95 30038038 311106..314132 A 1 NC_031672.1 Spliceosome-associated protein that is required for pre-mRNA splicing; necessary for Prp2p function at the first catalytic step of splicing; has similarity to S. pombe Cwf22p; CWC22 is an essential protein; GO_component: GO:0071006 - U2-type catalytic step 1 spliceosome [Evidence IDA] [PMID 20956557]; GO_component: GO:0005684 - U2-type spliceosomal complex [Evidence IDA] [PMID 11884590]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005681 - spliceosomal complex [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008380 - RNA splicing [Evidence IEA]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0000398 - mRNA splicing, via spliceosome [Evidence IDA] [PMID 20956557]; Cwc22p 314132 CWC22 30038038 CWC22 Sugiyamaella lignohabitans Cwc22p XP_018734347.1 311106 D 796027 CDS AWJ20_96 30038049 315673..316830 A 1 NC_031672.1 Dihydrolipoamide dehydrogenase; the lipoamide dehydrogenase component (E3) of the pyruvate dehydrogenase and 2-oxoglutarate dehydrogenase multi-enzyme complexes; LPD1 has a paralog, IRC15, that arose from the whole genome duplication; GO_component: GO:0005960 - glycine cleavage complex [Evidence IMP] [PMID 7498764]; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA]; GO_component: GO:0042645 - mitochondrial nucleoid [Evidence IDA] [PMID 10869431]; GO_component: GO:0042645 - mitochondrial nucleoid [Evidence IDA] [PMID 11926067]; GO_component: GO:0009353 - mitochondrial oxoglutarate dehydrogenase complex [Evidence IDA] [PMID 2072900]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0004148 - dihydrolipoyl dehydrogenase activity [Evidence IEA,IEA]; GO_function: GO:0004148 - dihydrolipoyl dehydrogenase activity [Evidence IDA] [PMID 2821168]; GO_function: GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO_function: GO:0004375 - glycine dehydrogenase (decarboxylating) activity [Evidence IMP] [PMID 7498764]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0016668 - oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor [Evidence IEA]; GO_function: GO:0004591 - oxoglutarate dehydrogenase (succinyl-transferring) activity [Evidence IMP] [PMID 3528755]; GO_function: GO:0004738 - pyruvate dehydrogenase activity [Evidence IMP] [PMID 3528755]; GO_process: GO:0006103 - 2-oxoglutarate metabolic process [Evidence IMP] [PMID 3528755]; GO_process: GO:0006564 - L-serine biosynthetic process [Evidence IMP] [PMID 7498764]; GO_process: GO:0045454 - cell redox homeostasis [Evidence IEA]; GO_process: GO:0006546 - glycine catabolic process [Evidence IMP] [PMID 7498764]; GO_process: GO:0042743 - hydrogen peroxide metabolic process [Evidence IGI,IMP] [PMID 17110466]; GO_process: GO:0006550 - isoleucine catabolic process [Evidence IMP] [PMID 1479341]; GO_process: GO:0006552 - leucine catabolic process [Evidence IMP] [PMID 1479341]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0006090 - pyruvate metabolic process [Evidence IMP] [PMID 3528755]; GO_process: GO:0006574 - valine catabolic process [Evidence IMP] [PMID 1479341]; dihydrolipoyl dehydrogenase 316830 LPD1 30038049 LPD1 Sugiyamaella lignohabitans dihydrolipoyl dehydrogenase XP_018734348.1 315673 D 796027 CDS AWJ20_97 30038060 complement(315747..316049) A 1 NC_031672.1 transposase 316049 30038060 AWJ20_97 Sugiyamaella lignohabitans transposase XP_018734349.1 315747 R 796027 CDS AWJ20_98 30038071 complement(317652..318515) A 1 NC_031672.1 Strand exchange protein; forms a helical filament with DNA that searches for homology; involved in the recombinational repair of double-strand breaks in DNA during vegetative growth and meiosis; homolog of Dmc1p and bacterial RecA protein; GO_component: GO:0005694 - chromosome [Evidence IEA,IEA]; GO_component: GO:0000794 - condensed nuclear chromosome [Evidence IDA] [PMID 9427283]; GO_component: GO:0000228 - nuclear chromosome [Evidence IDA] [PMID 11459983]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0008094 - DNA-dependent ATPase activity [Evidence IEA]; GO_function: GO:0008094 - DNA-dependent ATPase activity [Evidence IDA] [PMID 8066464]; GO_function: GO:0003684 - damaged DNA binding [Evidence IEA]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_function: GO:0000150 - recombinase activity [Evidence IDA] [PMID 8066464]; GO_function: GO:0003697 - single-stranded DNA binding [Evidence IDA] [PMID 20371520]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0006259 - DNA metabolic process [Evidence IEA]; GO_process: GO:0006310 - DNA recombination [Evidence IEA]; GO_process: GO:0006310 - DNA recombination [Evidence IDA] [PMID 22955832]; GO_process: GO:0006281 - DNA repair [Evidence IEA,IEA]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0045002 - double-strand break repair via single-strand annealing [Evidence IMP] [PMID 8849880]; GO_process: GO:0030491 - heteroduplex formation [Evidence IDA] [PMID 10506208]; GO_process: GO:0000709 - meiotic joint molecule formation [Evidence IMP] [PMID 1581961]; GO_process: GO:0007131 - reciprocal meiotic recombination [Evidence IMP] [PMID 16581767]; GO_process: GO:0042148 - strand invasion [Evidence IDA] [PMID 8066464]; GO_process: GO:0042148 - strand invasion [Evidence IDA] [PMID 9271413]; GO_process: GO:0000722 - telomere maintenance via recombination [Evidence IMP] [PMID 11238918]; recombinase RAD51 318515 RAD51 30038071 RAD51 Sugiyamaella lignohabitans recombinase RAD51 XP_018734350.1 317652 R 796027 CDS AWJ20_99 30038082 326344..328092 A 1 NC_031672.1 Endochitinase; required for cell separation after mitosis; transcriptional activation during the G1 phase of the cell cycle is mediated by transcription factor Ace2p; GO_component: GO:0005618 - cell wall [Evidence IEA,IEA]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 11747810]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 11914276]; GO_component: GO:0005576 - extracellular region [Evidence IEA,IEA]; GO_component: GO:0005576 - extracellular region [Evidence IDA] [PMID 19129178]; GO_component: GO:0005576 - extracellular region [Evidence IDA] [PMID 1918080]; GO_component: GO:0009277 - fungal-type cell wall [Evidence IDA] [PMID 11747810]; GO_component: GO:0009277 - fungal-type cell wall [Evidence IDA] [PMID 1918080]; GO_component: GO:0005635 - nuclear envelope [Evidence IDA] [PMID 11914276]; GO_function: GO:0008061 - chitin binding [Evidence IEA]; GO_function: GO:0004568 - chitinase activity [Evidence IEA,IEA]; GO_function: GO:0008843 - endochitinase activity [Evidence IDA] [PMID 6799506]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016798 - hydrolase activity, acting on glycosyl bonds [Evidence IEA]; GO_function: GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]; GO_process: GO:0005975 - carbohydrate metabolic process [Evidence IEA,IEA]; GO_process: GO:0006032 - chitin catabolic process [Evidence IEA,IEA]; GO_process: GO:0006032 - chitin catabolic process [Evidence IC] [PMID 3033651]; GO_process: GO:0007109 - cytokinesis, completion of separation [Evidence IMP] [PMID 1918080]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0000272 - polysaccharide catabolic process [Evidence IEA]; Cts1p 328092 CTS1 30038082 CTS1 Sugiyamaella lignohabitans Cts1p XP_018734351.1 326344 D 796027 CDS AWJ20_100 30032754 330231..332741 A 1 NC_031672.1 Arf family guanine nucleotide exchange factor SEC7 332741 SEC7 30032754 SEC7 Sugiyamaella lignohabitans Arf family guanine nucleotide exchange factor SEC7 XP_018734352.1 330231 D 796027 CDS AWJ20_101 30032765 333438..334013 A 1 NC_031672.1 Beta 3 subunit of the 20S proteasome; involved in ubiquitin-dependent catabolism; human homolog is subunit C10; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IC] [PMID 9087403]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IC] [PMID 9087403]; GO_component: GO:0000502 - proteasome complex [Evidence IEA]; GO_component: GO:0005839 - proteasome core complex [Evidence IEA]; GO_component: GO:0019774 - proteasome core complex, beta-subunit complex [Evidence IDA] [PMID 9087403]; GO_component: GO:0034515 - proteasome storage granule [Evidence IC] [PMID 9087403]; GO_function: GO:0061133 - endopeptidase activator activity [Evidence IGI] [PMID 9207060]; GO_function: GO:0004175 - endopeptidase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_function: GO:0004298 - threonine-type endopeptidase activity [Evidence IEA,IEA]; GO_process: GO:0010499 - proteasomal ubiquitin-independent protein catabolic process [Evidence IDA] [PMID 19162040]; GO_process: GO:0043161 - proteasome-mediated ubiquitin-dependent protein catabolic process [Evidence IDA] [PMID 11545745]; GO_process: GO:0043161 - proteasome-mediated ubiquitin-dependent protein catabolic process [Evidence IDA] [PMID 19029916]; GO_process: GO:0006508 - proteolysis [Evidence IEA]; GO_process: GO:0051603 - proteolysis involved in cellular protein catabolic process [Evidence IEA]; proteasome core particle subunit beta 3 334013 PUP3 30032765 PUP3 Sugiyamaella lignohabitans proteasome core particle subunit beta 3 XP_018734353.1 333438 D 796027 CDS AWJ20_102 30032776 334906..336996 A 1 NC_031672.1 uncharacterized protein 336996 30032776 AWJ20_102 Sugiyamaella lignohabitans uncharacterized protein XP_018734354.1 334906 D 796027 CDS AWJ20_103 30032787 join(339086..339241,339436..343338) A 1 NC_031672.1 Subunit of TORC2 (Tor2p-Lst8p-Avo1-Avo2-Tsc11p-Bit61p); TORC2 is a membrane-associated complex that regulates actin cytoskeletal dynamics during polarized growth and cell wall integrity; involved in sphingolipid metabolism; contains a RasGEFN domain; GO_component: GO:0031932 - TORC2 complex [Evidence IEA]; GO_component: GO:0031932 - TORC2 complex [Evidence IPI] [PMID 12408816]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0005085 - guanyl-nucleotide exchange factor activity [Evidence IEA]; GO_function: GO:0005515 - protein binding [Evidence IPI] [PMID 12631735]; GO_process: GO:0031929 - TOR signaling [Evidence IEA]; GO_process: GO:0031929 - TOR signaling [Evidence IC] [PMID 12408816]; GO_process: GO:0030950 - establishment or maintenance of actin cytoskeleton polarity [Evidence IPI] [PMID 12408816]; GO_process: GO:0030950 - establishment or maintenance of actin cytoskeleton polarity [Evidence IMP] [PMID 15809876]; GO_process: GO:0031505 - fungal-type cell wall organization [Evidence IGI,IMP] [PMID 15809876]; GO_process: GO:0043087 - regulation of GTPase activity [Evidence IEA]; GO_process: GO:0001558 - regulation of cell growth [Evidence IPI] [PMID 12408816]; GO_process: GO:0030148 - sphingolipid biosynthetic process [Evidence IGI] [PMID 9804843]; Tsc11p 343338 TSC11 30032787 TSC11 Sugiyamaella lignohabitans Tsc11p XP_018734355.1 339086 D 796027 CDS AWJ20_104 30032798 343924..345444 A 1 NC_031672.1 Protein involved in nuclear export of the large ribosomal subunit; acts as a Crm1p-dependent adapter protein for export of nascent ribosomal subunits through the nuclear pore complex; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 10022925]; GO_component: GO:0022625 - cytosolic large ribosomal subunit [Evidence IDA] [PMID 10022925]; GO_component: GO:0005654 - nucleoplasm [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 23212245]; GO_function: GO:0043023 - ribosomal large subunit binding [Evidence IDA] [PMID 11105761]; GO_function: GO:0043023 - ribosomal large subunit binding [Evidence IDA] [PMID 17347149]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0000055 - ribosomal large subunit export from nucleus [Evidence IMP] [PMID 11086007]; GO_process: GO:0000055 - ribosomal large subunit export from nucleus [Evidence IGI] [PMID 23212245]; GO_process: GO:0006810 - transport [Evidence IEA]; ribosome-binding protein NMD3 345444 NMD3 30032798 NMD3 Sugiyamaella lignohabitans ribosome-binding protein NMD3 XP_018734356.1 343924 D 796027 CDS AWJ20_105 30032809 345783..347639 A 1 NC_031672.1 Component of the SSU processome and 90S preribosome; required for pre-18S rRNA processing, interacts with and controls the stability of Imp3p and Imp4p, essential for viability; similar to human Mpp10p; GO_component: GO:0030686 - 90S preribosome [Evidence IDA] [PMID 12150911]; GO_component: GO:0034457 - Mpp10 complex [Evidence IDA] [PMID 17515605]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 11914276]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11914276]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA,IEA]; GO_component: GO:0032040 - small-subunit processome [Evidence IDA] [PMID 12068309]; GO_component: GO:0032040 - small-subunit processome [Evidence IMP] [PMID 12242301]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0000480 - endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 9315638]; GO_process: GO:0000447 - endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 9315638]; GO_process: GO:0000472 - endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 9315638]; GO_process: GO:0006364 - rRNA processing [Evidence IEA,IEA]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; Mpp10p 347639 MPP10 30032809 MPP10 Sugiyamaella lignohabitans Mpp10p XP_018734357.1 345783 D 796027 CDS AWJ20_106 30032820 complement(347803..349416) A 1 NC_031672.1 uncharacterized protein 349416 30032820 AWJ20_106 Sugiyamaella lignohabitans uncharacterized protein XP_018734358.1 347803 R 796027 CDS AWJ20_107 30032831 350257..351528 A 1 NC_031672.1 E3-binding protein of the mitochondrial pyruvate dehydrogenase complex; plays a structural role in the complex by binding and positioning Dihydrolipoamide dehydrogenase (E3) to the dihydrolipoamide acetyltransferase (E2) core; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA]; GO_component: GO:0005967 - mitochondrial pyruvate dehydrogenase complex [Evidence IDA] [PMID 2007123]; GO_component: GO:0005967 - mitochondrial pyruvate dehydrogenase complex [Evidence IDA,IPI] [PMID 7947791]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0005198 - structural molecule activity [Evidence IDA,IMP] [PMID 2007123]; GO_function: GO:0016746 - transferase activity, transferring acyl groups [Evidence IEA]; GO_process: GO:0006086 - acetyl-CoA biosynthetic process from pyruvate [Evidence IDA,IMP] [PMID 2007123]; GO_process: GO:0006086 - acetyl-CoA biosynthetic process from pyruvate [Evidence IDA] [PMID 7947791]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; Pdx1p 351528 PDX1 30032831 PDX1 Sugiyamaella lignohabitans Pdx1p XP_018734359.1 350257 D 796027 CDS AWJ20_108 30032842 complement(351670..352785) A 1 NC_031672.1 uncharacterized protein 352785 30032842 AWJ20_108 Sugiyamaella lignohabitans uncharacterized protein XP_018734360.1 351670 R 796027 CDS AWJ20_109 30032853 353688..355778 A 1 NC_031672.1 uncharacterized protein 355778 30032853 AWJ20_109 Sugiyamaella lignohabitans uncharacterized protein XP_018734361.1 353688 D 796027 CDS AWJ20_111 30032876 complement(356310..358163) A 1 NC_031672.1 uncharacterized protein 358163 30032876 AWJ20_111 Sugiyamaella lignohabitans uncharacterized protein XP_018734362.1 356310 R 796027 CDS AWJ20_113 30032898 complement(360954..362033) A 1 NC_031672.1 uncharacterized protein 362033 30032898 AWJ20_113 Sugiyamaella lignohabitans uncharacterized protein XP_018734363.1 360954 R 796027 CDS AWJ20_114 30032909 complement(362363..363877) A 1 NC_031672.1 Heme A:farnesyltransferase; catalyzes the first step in the conversion of protoheme to the heme A prosthetic group required for cytochrome c oxidase activity; human ortholog is associated with mitochondrial disorders; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0031966 - mitochondrial membrane [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0004659 - prenyltransferase activity [Evidence IEA]; GO_function: GO:0008495 - protoheme IX farnesyltransferase activity [Evidence IEA]; GO_function: GO:0008495 - protoheme IX farnesyltransferase activity [Evidence ISS] [PMID 8118433]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0048034 - heme O biosynthetic process [Evidence IEA]; GO_process: GO:0006784 - heme a biosynthetic process [Evidence IMP] [PMID 8118433]; GO_process: GO:0006783 - heme biosynthetic process [Evidence IEA,IEA]; Cox10p 363877 COX10 30032909 COX10 Sugiyamaella lignohabitans Cox10p XP_018734364.1 362363 R 796027 CDS AWJ20_115 30032920 complement(364750..365847) A 1 NC_031672.1 uncharacterized protein 365847 30032920 AWJ20_115 Sugiyamaella lignohabitans uncharacterized protein XP_018734365.1 364750 R 796027 CDS AWJ20_116 30032931 complement(367099..368109) A 1 NC_031672.1 Polyphosphatidylinositol phosphatase; dephosphorylates multiple phosphatidylinositol phosphates; involved in trans Golgi network-to-early endosome pathway; hyperosmotic stress causes translocation to actin patches; contains Sac1 and 5-ptase domains; INP53 has a paralog, INP52, that arose from the whole genome duplication; GO_component: GO:0030479 - actin cortical patch [Evidence IDA] [PMID 11094088]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11094088]; GO_component: GO:0016020 - membrane [Evidence IDA] [PMID 9560389]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0043813 - phosphatidylinositol-3,5-bisphosphate 5-phosphatase activity [Evidence IDA] [PMID 10224048]; GO_function: GO:0004438 - phosphatidylinositol-3-phosphatase activity [Evidence IDA] [PMID 10224048]; GO_function: GO:0004439 - phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity [Evidence IEA]; GO_function: GO:0004439 - phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity [Evidence IDA] [PMID 10224048]; GO_function: GO:0004439 - phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity [Evidence IMP] [PMID 9438131]; GO_function: GO:0043812 - phosphatidylinositol-4-phosphate phosphatase activity [Evidence IDA] [PMID 10224048]; GO_function: GO:0042578 - phosphoric ester hydrolase activity [Evidence IEA]; GO_process: GO:0006897 - endocytosis [Evidence IEA]; GO_process: GO:0046856 - phosphatidylinositol dephosphorylation [Evidence IEA]; GO_process: GO:0046856 - phosphatidylinositol dephosphorylation [Evidence IDA] [PMID 10224048]; GO_process: GO:0046856 - phosphatidylinositol dephosphorylation [Evidence IMP] [PMID 9438131]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; phosphatidylinositol-3-/phosphoinositide 5-phosphatase INP53 368109 INP53 30032931 INP53 Sugiyamaella lignohabitans phosphatidylinositol-3-/phosphoinositide 5-phosphatase INP53 XP_018734366.1 367099 R 796027 CDS AWJ20_117 30032942 complement(368189..371158) A 1 NC_031672.1 inositol polyphosphate phosphatase (predicted) 371158 30032942 AWJ20_117 Sugiyamaella lignohabitans inositol polyphosphate phosphatase (predicted) XP_018734367.1 368189 R 796027 CDS AWJ20_118 30032953 complement(372419..373186) A 1 NC_031672.1 Plasma membrane t-SNARE; involved in fusion of secretory vesicles at the plasma membrane; syntaxin homolog that is functionally redundant with Sso1p; SSO2 has a paralog, SSO1, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 11914276]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 16622836]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 17507646]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 19502581]; GO_component: GO:0005628 - prospore membrane [Evidence IDA] [PMID 19502581]; GO_function: GO:0005484 - SNAP receptor activity [Evidence IEA]; GO_function: GO:0005484 - SNAP receptor activity [Evidence IPI] [PMID 7954793]; GO_function: GO:0070300 - phosphatidic acid binding [Evidence IDA] [PMID 19502581]; GO_process: GO:0006893 - Golgi to plasma membrane transport [Evidence TAS] [PMID 10047442]; GO_process: GO:0031321 - ascospore-type prospore assembly [Evidence IGI] [PMID 19502581]; GO_process: GO:0006886 - intracellular protein transport [Evidence IEA]; GO_process: GO:0006906 - vesicle fusion [Evidence TAS] [PMID 10047442]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IEA]; Sso2p 373186 SSO2 30032953 SSO2 Sugiyamaella lignohabitans Sso2p XP_018734368.1 372419 R 796027 CDS AWJ20_119 30032964 381201..382856 A 1 NC_031672.1 Glycolytic enzyme phosphoglucose isomerase; catalyzes the interconversion of glucose-6-phosphate and fructose-6-phosphate; required for cell cycle progression and completion of the gluconeogenic events of sporulation; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16962558]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 16622836]; GO_function: GO:0004347 - glucose-6-phosphate isomerase activity [Evidence IEA,IEA]; GO_function: GO:0004347 - glucose-6-phosphate isomerase activity [Evidence IMP] [PMID 3007940]; GO_function: GO:0016853 - isomerase activity [Evidence IEA]; GO_process: GO:0006094 - gluconeogenesis [Evidence IEA,IEA]; GO_process: GO:0006094 - gluconeogenesis [Evidence IMP] [PMID 3020369]; GO_process: GO:0006096 - glycolytic process [Evidence IEA,IEA,IEA]; GO_process: GO:0006096 - glycolytic process [Evidence IMP] [PMID 3007940]; GO_process: GO:0006098 - pentose-phosphate shunt [Evidence IMP] [PMID 7901008]; glucose-6-phosphate isomerase 382856 PGI1 30032964 PGI1 Sugiyamaella lignohabitans glucose-6-phosphate isomerase XP_018734369.1 381201 D 796027 CDS AWJ20_120 30032976 384229..384924 A 1 NC_031672.1 uncharacterized protein 384924 30032976 AWJ20_120 Sugiyamaella lignohabitans uncharacterized protein XP_018734370.1 384229 D 796027 CDS AWJ20_121 30032987 complement(385276..387441) A 1 NC_031672.1 putative serine/threonine protein kinase KSP1 387441 KSP1 30032987 KSP1 Sugiyamaella lignohabitans putative serine/threonine protein kinase KSP1 XP_018734371.1 385276 R 796027 CDS AWJ20_122 30032998 392838..393656 A 1 NC_031672.1 uncharacterized protein 393656 30032998 AWJ20_122 Sugiyamaella lignohabitans uncharacterized protein XP_018734372.1 392838 D 796027 CDS AWJ20_123 30033009 395872..398796 A 1 NC_031672.1 uncharacterized protein 398796 30033009 AWJ20_123 Sugiyamaella lignohabitans uncharacterized protein XP_018734373.1 395872 D 796027 CDS AWJ20_124 30033020 401484..404087 A 1 NC_031672.1 Zinc-regulated transcription factor; binds to zinc-responsive promoters to induce transcription of certain genes in presence of zinc, represses other genes in low zinc; regulates its own transcription; contains seven zinc-finger domains; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 10899124]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0000977 - RNA polymerase II regulatory region sequence-specific DNA binding [Evidence IMP] [PMID 12549926]; GO_function: GO:0000977 - RNA polymerase II regulatory region sequence-specific DNA binding [Evidence IDA,IMP] [PMID 9786867]; GO_function: GO:0046872 - metal ion binding [Evidence IEA,IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000981 - sequence-specific DNA binding RNA polymerase II transcription factor activity [Evidence IDA] [PMID 22128164]; GO_function: GO:0008270 - zinc ion binding [Evidence IDA] [PMID 14517251]; GO_function: GO:0008270 - zinc ion binding [Evidence IDA,IMP] [PMID 16720702]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IDA] [PMID 22128164]; GO_process: GO:0034225 - regulation of transcription from RNA polymerase II promoter in response to zinc ion starvation [Evidence IMP] [PMID 9271382]; GO_process: GO:0034225 - regulation of transcription from RNA polymerase II promoter in response to zinc ion starvation [Evidence IMP] [PMID 9786867]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Zap1p 404087 ZAP1 30033020 ZAP1 Sugiyamaella lignohabitans Zap1p XP_018734374.1 401484 D 796027 CDS AWJ20_125 30033031 complement(404377..405324) A 1 NC_031672.1 Vacuolar protein component of the retromer; forms part of the multimeric membrane-associated retromer complex involved in vacuolar protein sorting along with Vps35p, Vps29p, Vps17p, and Vps5p; essential for endosome-to-Golgi retrograde protein transport; interacts with Ypt7p; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005768 - endosome [Evidence IPI] [PMID 9700157]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 22842922]; GO_component: GO:0030904 - retromer complex [Evidence IEA]; GO_component: GO:0030904 - retromer complex [Evidence IMP,IPI] [PMID 9700157]; GO_component: GO:0030906 - retromer complex, inner shell [Evidence IMP] [PMID 9700157]; GO_function: GO:0008565 - protein transporter activity [Evidence IMP,IPI] [PMID 9700157]; GO_process: GO:0045053 - protein retention in Golgi apparatus [Evidence IMP] [PMID 8649377]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0042147 - retrograde transport, endosome to Golgi [Evidence IPI] [PMID 9700157]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0007034 - vacuolar transport [Evidence IEA]; retromer subunit PEP8 405324 PEP8 30033031 PEP8 Sugiyamaella lignohabitans retromer subunit PEP8 XP_018734375.1 404377 R 796027 CDS AWJ20_126 30033042 complement(405811..407652) A 1 NC_031672.1 uncharacterized protein 407652 30033042 AWJ20_126 Sugiyamaella lignohabitans uncharacterized protein XP_018734376.1 405811 R 796027 CDS AWJ20_127 30033053 complement(408233..409825) A 1 NC_031672.1 hypothetical protein with similarity to Str2p; Str2p is a cystathionine gamma-synthase important in sulfur metabolism; YLL058W is not an essential gene; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0003962 - cystathionine gamma-synthase activity [Evidence IEA]; GO_function: GO:0003962 - cystathionine gamma-synthase activity [Evidence ISS] [PMID 10821189]; GO_function: GO:0030170 - pyridoxal phosphate binding [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0009086 - methionine biosynthetic process [Evidence IEA]; GO_process: GO:0006790 - sulfur compound metabolic process [Evidence ISS] [PMID 10821189]; cystathionine gamma-synthase 409825 30033053 AWJ20_127 Sugiyamaella lignohabitans cystathionine gamma-synthase XP_018734377.1 408233 R 796027 CDS AWJ20_128 30033064 410363..411307 A 1 NC_031672.1 formamidase 411307 30033064 AWJ20_128 Sugiyamaella lignohabitans formamidase XP_018734378.1 410363 D 796027 CDS AWJ20_129 30033075 complement(411573..413339) A 1 NC_031672.1 uncharacterized protein 413339 30033075 AWJ20_129 Sugiyamaella lignohabitans uncharacterized protein XP_018734379.1 411573 R 796027 CDS AWJ20_130 30033087 complement(414933..416363) A 1 NC_031672.1 uncharacterized protein 416363 30033087 AWJ20_130 Sugiyamaella lignohabitans uncharacterized protein XP_018734380.1 414933 R 796027 CDS AWJ20_131 30033098 420374..421774 A 1 NC_031672.1 Ammonium permease involved in regulation of pseudohyphal growth; belongs to a ubiquitous family of cytoplasmic membrane proteins that transport only ammonium (NH4+); expression is under the nitrogen catabolite repression regulation; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 11069679]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 24124599]; GO_function: GO:0008519 - ammonium transmembrane transporter activity [Evidence IEA]; GO_function: GO:0008519 - ammonium transmembrane transporter activity [Evidence IDA,IMP] [PMID 9234685]; GO_process: GO:0072488 - ammonium transmembrane transport [Evidence IEA]; GO_process: GO:0015696 - ammonium transport [Evidence IEA,IEA]; GO_process: GO:0015696 - ammonium transport [Evidence IMP] [PMID 9234685]; GO_process: GO:0019740 - nitrogen utilization [Evidence IMP] [PMID 9234685]; GO_process: GO:0007124 - pseudohyphal growth [Evidence IMP] [PMID 9482721]; GO_process: GO:0006810 - transport [Evidence IEA]; ammonium permease MEP2 421774 MEP2 30033098 MEP2 Sugiyamaella lignohabitans ammonium permease MEP2 XP_018734381.1 420374 D 796027 CDS AWJ20_132 30033109 complement(422094..424100) A 1 NC_031672.1 one of two likely peroxisomal copper amine oxidase genes; similar to A.niger AO-I; allele of CaO19.10662; putative peroxisomal copper amine oxidase 424100 AMO2 30033109 AMO2 Sugiyamaella lignohabitans putative peroxisomal copper amine oxidase XP_018734382.1 422094 R 796027 CDS AWJ20_133 30033120 complement(425344..426708) A 1 NC_031672.1 Subunit of a Golgi mannosyltransferase complex; complex mediates elongation of the polysaccharide mannan backbone; membrane protein of the mannosyltransferase family; other members of the complex are Anp1p, Mnn9p, Mnn11p, and Hoc1p; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA,IEA]; GO_component: GO:0000136 - alpha-1,6-mannosyltransferase complex [Evidence IDA] [PMID 10037752]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0000009 - alpha-1,6-mannosyltransferase activity [Evidence IDA] [PMID 10037752]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA]; GO_function: GO:0016758 - transferase activity, transferring hexosyl groups [Evidence IEA]; GO_process: GO:0000917 - barrier septum assembly [Evidence IMP] [PMID 16034811]; GO_process: GO:0000032 - cell wall mannoprotein biosynthetic process [Evidence IMP] [PMID 10037752]; GO_process: GO:0006487 - protein N-linked glycosylation [Evidence IMP] [PMID 23210626]; GO_process: GO:0006487 - protein N-linked glycosylation [Evidence IMP] [PMID 8991513]; Mnn10p 426708 MNN10 30033120 MNN10 Sugiyamaella lignohabitans Mnn10p XP_018734383.1 425344 R 796027 CDS AWJ20_134 30033131 complement(429548..430714) A 1 NC_031672.1 Alpha-1,6-mannosyltransferase; involved in cell wall mannan biosynthesis; subunit of a Golgi-localized complex that also contains Anp1p, Mnn9p, Mnn11p, and Mnn10p; identified as a suppressor of a cell lysis sensitive pkc1-371 allele; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA,IEA]; GO_component: GO:0000136 - alpha-1,6-mannosyltransferase complex [Evidence IDA] [PMID 10037752]; GO_component: GO:0000136 - alpha-1,6-mannosyltransferase complex [Evidence IPI] [PMID 9430634]; GO_component: GO:0000136 - alpha-1,6-mannosyltransferase complex [Evidence IDA] [PMID 9434768]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0000009 - alpha-1,6-mannosyltransferase activity [Evidence IDA] [PMID 10037752]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA]; GO_function: GO:0016757 - transferase activity, transferring glycosyl groups [Evidence ISS] [PMID 9653120]; GO_process: GO:0000032 - cell wall mannoprotein biosynthetic process [Evidence TAS] [PMID 10037752]; GO_process: GO:0006080 - substituted mannan metabolic process [Evidence TAS] [PMID 10037752]; Hoc1p 430714 HOC1 30033131 HOC1 Sugiyamaella lignohabitans Hoc1p XP_018734384.1 429548 R 796027 CDS AWJ20_135 30033142 complement(431722..432381) A 1 NC_031672.1 Conserved nuclear protein that interacts with GTP-Gsp1p; stimulates nucleotide release from Gsp1p; involved in nuclear protein import; nucleotide release is inhibited by Yrb1p; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9860978]; GO_function: GO:0008536 - Ran GTPase binding [Evidence IPI] [PMID 11509570]; GO_process: GO:0051028 - mRNA transport [Evidence IEA]; GO_process: GO:0006606 - protein import into nucleus [Evidence IMP] [PMID 9860978]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Mog1p 432381 MOG1 30033142 MOG1 Sugiyamaella lignohabitans Mog1p XP_018734385.1 431722 R 796027 CDS AWJ20_136 30033153 433916..436552 A 1 NC_031672.1 similar to S. cerevisiae URB2 (YJR041C) essential nucleolar protein (Unhealthy Ribosome Biogenesis); allele of CaO19.5884; putative nucleolar protein URB2p 436552 URB2 30033153 URB2 Sugiyamaella lignohabitans putative nucleolar protein URB2p XP_018734386.1 433916 D 796027 CDS AWJ20_137 30033164 441333..442730 A 1 NC_031672.1 Transcriptional regulator of pseudohyphal growth; protein with sequence similarity to S. pombe gti1+ (gluconate transport inducer 1) and C. albicans Wor1; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; Mit1p 442730 MIT1 30033164 MIT1 Sugiyamaella lignohabitans Mit1p XP_018734387.1 441333 D 796027 CDS AWJ20_138 30033175 445023..446948 A 1 NC_031672.1 BRCT domain protein Rad4 446948 rad4 30033175 rad4 Sugiyamaella lignohabitans BRCT domain protein Rad4 XP_018734388.1 445023 D 796027 CDS AWJ20_139 30033186 complement(447292..448296) A 1 NC_031672.1 2'-O-ribosyl phosphate transferase; modifies the initiator methionine tRNA at position 64 to distinguish it from elongator methionine tRNA; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA]; GO_function: GO:0016763 - transferase activity, transferring pentosyl groups [Evidence IEA]; GO_function: GO:0016763 - transferase activity, transferring pentosyl groups [Evidence IDA,IGI,IMP] [PMID 7954819]; GO_process: GO:0019988 - charged-tRNA amino acid modification [Evidence IGI,IMP] [PMID 7954819]; GO_process: GO:0008033 - tRNA processing [Evidence IEA]; Rit1p 448296 RIT1 30033186 RIT1 Sugiyamaella lignohabitans Rit1p XP_018734389.1 447292 R 796027 CDS AWJ20_140 30033198 complement(448499..448852) A 1 NC_031672.1 2'-O-ribosyl phosphate transferase; modifies the initiator methionine tRNA at position 64 to distinguish it from elongator methionine tRNA; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA]; GO_function: GO:0016763 - transferase activity, transferring pentosyl groups [Evidence IEA]; GO_function: GO:0016763 - transferase activity, transferring pentosyl groups [Evidence IDA,IGI,IMP] [PMID 7954819]; GO_process: GO:0019988 - charged-tRNA amino acid modification [Evidence IGI,IMP] [PMID 7954819]; GO_process: GO:0008033 - tRNA processing [Evidence IEA]; Rit1p 448852 RIT1 30033198 RIT1 Sugiyamaella lignohabitans Rit1p XP_018734390.1 448499 R 796027 CDS AWJ20_141 30033209 450374..451582 A 1 NC_031672.1 Peptidyl-prolyl cis-trans isomerase (PPIase); nuclear proline isomerase; affects expression of multiple genes via its role in nucleosome assembly; catalyzes isomerization of proline residues in histones H3 and H4, which affects lysine methylation of those histones; PPIase domain acts as a transcriptional repressor when tethered to DNA by lexA, and repressor activity is dependent on PPIase activity; FPR4 has a paralog, FPR3, that arose from the whole genome duplication; GO_component: GO:0000785 - chromatin [Evidence IDA] [PMID 14981505]; GO_component: GO:0000785 - chromatin [Evidence IDA] [PMID 16959570]; GO_component: GO:0016020 - membrane [Evidence IBA]; GO_component: GO:0005730 - nucleolus [Evidence IBA,IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 22842922]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14981505]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9371805]; GO_function: GO:0005528 - FK506 binding [Evidence IBA,IEA]; GO_function: GO:0016853 - isomerase activity [Evidence IEA]; GO_function: GO:0005527 - macrolide binding [Evidence IDA] [PMID 9371805]; GO_function: GO:0003755 - peptidyl-prolyl cis-trans isomerase activity [Evidence IEA,IEA,IEA]; GO_function: GO:0003755 - peptidyl-prolyl cis-trans isomerase activity [Evidence IDA] [PMID 14981505]; GO_function: GO:0003755 - peptidyl-prolyl cis-trans isomerase activity [Evidence IDA] [PMID 16959570]; GO_process: GO:0000412 - histone peptidyl-prolyl isomerization [Evidence IEA]; GO_process: GO:0000412 - histone peptidyl-prolyl isomerization [Evidence IDA] [PMID 16959570]; GO_process: GO:0000415 - negative regulation of histone H3-K36 methylation [Evidence IMP] [PMID 16959570]; GO_process: GO:0006334 - nucleosome assembly [Evidence IDA] [PMID 16846601]; GO_process: GO:0006334 - nucleosome assembly [Evidence IDA] [PMID 24297734]; GO_process: GO:0018208 - peptidyl-proline modification [Evidence IBA,IEA]; GO_process: GO:0006457 - protein folding [Evidence IEA,IEA]; GO_process: GO:0034401 - regulation of transcription by chromatin organization [Evidence IMP] [PMID 16959570]; peptidylprolyl isomerase FPR4 451582 FPR4 30033209 FPR4 Sugiyamaella lignohabitans peptidylprolyl isomerase FPR4 XP_018734391.1 450374 D 796027 CDS AWJ20_142 30033220 complement(451808..453898) A 1 NC_031672.1 Sm-like protein involved in docking and fusion of exocytic vesicles; binds to assembled SNARE complexes at the membrane and stimulates membrane fusion; localization to sites of secretion (bud neck and bud tip) is dependent on SNARE function; interacts directly with essential exocyst subunit Sec6p; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 10427089]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 11038189]; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 10427089]; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 11038189]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 15466482]; GO_function: GO:0000149 - SNARE binding [Evidence IDA] [PMID 10427089]; GO_process: GO:0006887 - exocytosis [Evidence IMP,IPI] [PMID 10427089]; GO_process: GO:0031340 - positive regulation of vesicle fusion [Evidence IDA] [PMID 15466482]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0006904 - vesicle docking involved in exocytosis [Evidence IEA]; GO_process: GO:0006904 - vesicle docking involved in exocytosis [Evidence IPI] [PMID 10427089]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IEA]; Sec1p 453898 SEC1 30033220 SEC1 Sugiyamaella lignohabitans Sec1p XP_018734392.1 451808 R 796027 CDS AWJ20_143 30033231 complement(454917..456149) A 1 NC_031672.1 Component of the Paf1p complex involved in transcription elongation; binds to and modulates the activity of RNA polymerases I and II; required for expression of a subset of genes, including cell cycle-regulated genes; involved in SER3 repression by helping to maintain SRG1 transcription-dependent nucleosome occupancy; homolog of human PD2/hPAF1; GO_component: GO:0016593 - Cdc73/Paf1 complex [Evidence IPI] [PMID 11884586]; GO_component: GO:0016593 - Cdc73/Paf1 complex [Evidence IPI] [PMID 11927560]; GO_component: GO:0016593 - Cdc73/Paf1 complex [Evidence IPI] [PMID 9032243]; GO_component: GO:0005654 - nucleoplasm [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 15149594]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 15643076]; GO_component: GO:0035327 - transcriptionally active chromatin [Evidence IDA] [PMID 11983171]; GO_function: GO:1990269 - RNA polymerase II C-terminal domain phosphoserine binding [Evidence IDA] [PMID 22796944]; GO_function: GO:0000993 - RNA polymerase II core binding [Evidence IPI] [PMID 16581788]; GO_function: GO:0000983 - RNA polymerase II core promoter sequence-specific DNA binding transcription factor activity [Evidence IDA] [PMID 16581788]; GO_function: GO:0001076 - RNA polymerase II transcription factor binding transcription factor activity [Evidence IPI] [PMID 11927560]; GO_function: GO:0001076 - RNA polymerase II transcription factor binding transcription factor activity [Evidence IPI] [PMID 16581788]; GO_function: GO:0001089 - TFIIF-class binding transcription factor activity [Evidence IMP,IPI] [PMID 9032243]; GO_function: GO:0003682 - chromatin binding [Evidence IDA] [PMID 11983171]; GO_process: GO:0006353 - DNA-templated transcription, termination [Evidence IMP] [PMID 23109428]; GO_process: GO:0000183 - chromatin silencing at rDNA [Evidence IMP] [PMID 16582434]; GO_process: GO:0070911 - global genome nucleotide-excision repair [Evidence IMP] [PMID 21737840]; GO_process: GO:0031124 - mRNA 3'-end processing [Evidence IMP] [PMID 15149594]; GO_process: GO:0045910 - negative regulation of DNA recombination [Evidence IMP] [PMID 9891041]; GO_process: GO:0000122 - negative regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 15180994]; GO_process: GO:2001255 - positive regulation of histone H3-K36 trimethylation [Evidence IMP] [PMID 17948059]; GO_process: GO:2001165 - positive regulation of phosphorylation of RNA polymerase II C-terminal domain serine 2 residues [Evidence IMP] [PMID 18469135]; GO_process: GO:2001209 - positive regulation of transcription elongation from RNA polymerase I promoter [Evidence IDA] [PMID 20299458]; GO_process: GO:0032968 - positive regulation of transcription elongation from RNA polymerase II promoter [Evidence IMP] [PMID 14710186]; GO_process: GO:0006364 - rRNA processing [Evidence IMP] [PMID 20299458]; GO_process: GO:0031938 - regulation of chromatin silencing at telomere [Evidence IMP] [PMID 12667454]; GO_process: GO:0031938 - regulation of chromatin silencing at telomere [Evidence IMP] [PMID 18194564]; GO_process: GO:2001173 - regulation of histone H2B conserved C-terminal lysine ubiquitination [Evidence IDA] [PMID 19531475]; GO_process: GO:2001166 - regulation of histone H2B ubiquitination [Evidence IMP] [PMID 12876294]; GO_process: GO:0051569 - regulation of histone H3-K4 methylation [Evidence IMP] [PMID 12667454]; GO_process: GO:0051569 - regulation of histone H3-K4 methylation [Evidence IMP] [PMID 12876294]; GO_process: GO:0051569 - regulation of histone H3-K4 methylation [Evidence IMP] [PMID 15180994]; GO_process: GO:2001163 - regulation of phosphorylation of RNA polymerase II C-terminal domain serine 2 residues [Evidence IMP] [PMID 15149594]; GO_process: GO:0034401 - regulation of transcription by chromatin organization [Evidence IMP] [PMID 18194564]; GO_process: GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 11884586]; GO_process: GO:0000083 - regulation of transcription involved in G1/S transition of mitotic cell cycle [Evidence IMP] [PMID 10219085]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0090262 - regulation of transcription-coupled nucleotide-excision repair [Evidence IGI] [PMID 21737840]; GO_process: GO:0031126 - snoRNA 3'-end processing [Evidence IMP] [PMID 16246725]; GO_process: GO:0001015 - snoRNA transcription from an RNA polymerase II promoter [Evidence IDA,IMP] [PMID 16246725]; GO_process: GO:0006362 - transcription elongation from RNA polymerase I promoter [Evidence IMP] [PMID 19164765]; GO_process: GO:0006368 - transcription elongation from RNA polymerase II promoter [Evidence IGI,IMP] [PMID 11927560]; GO_process: GO:0006360 - transcription from RNA polymerase I promoter [Evidence IGI,IMP] [PMID 20299458]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Paf1p 456149 PAF1 30033231 PAF1 Sugiyamaella lignohabitans Paf1p XP_018734393.1 454917 R 796027 CDS AWJ20_144 30033242 complement(457981..458799) A 1 NC_031672.1 S-adenosylmethionine transporter of the mitochondrial inner membrane; member of the mitochondrial carrier family; required for biotin biosynthesis and respiratory growth; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence ISS] [PMID 10930523]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14609944]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0000095 - S-adenosyl-L-methionine transmembrane transporter activity [Evidence IDA,IGI,IMP] [PMID 14609944]; GO_process: GO:0015805 - S-adenosyl-L-methionine transport [Evidence IDA,IGI,IMP] [PMID 14609944]; GO_process: GO:0006810 - transport [Evidence IEA]; Pet8p 458799 PET8 30033242 PET8 Sugiyamaella lignohabitans Pet8p XP_018734394.1 457981 R 796027 CDS AWJ20_145 30033253 459771..461255 A 1 NC_031672.1 Cysteine desulfurase; involved in iron-sulfur cluster (Fe/S) biogenesis and in thio-modification of mitochondrial and cytoplasmic tRNAs; essential protein located predominantly in mitochondria; GO_component: GO:1990221 - L-cysteine desulfurase complex [Evidence IPI] [PMID 24045011]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 10406803]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 19720832]; GO_component: GO:0005634 - nucleus [Evidence IMP] [PMID 11110795]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 19720832]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0031071 - cysteine desulfurase activity [Evidence IEA,IEA]; GO_function: GO:0031071 - cysteine desulfurase activity [Evidence IDA] [PMID 12065597]; GO_function: GO:0031071 - cysteine desulfurase activity [Evidence IDA] [PMID 15220327]; GO_function: GO:0030170 - pyridoxal phosphate binding [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006879 - cellular iron ion homeostasis [Evidence IMP] [PMID 10551871]; GO_process: GO:0006534 - cysteine metabolic process [Evidence IEA]; GO_process: GO:0016226 - iron-sulfur cluster assembly [Evidence IMP] [PMID 12970193]; GO_process: GO:0016226 - iron-sulfur cluster assembly [Evidence IDA] [PMID 15220327]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0070903 - mitochondrial tRNA thio-modification [Evidence IMP] [PMID 14722066]; GO_process: GO:0008033 - tRNA processing [Evidence IEA]; GO_process: GO:0034227 - tRNA thio-modification [Evidence IMP] [PMID 14722066]; GO_process: GO:0034227 - tRNA thio-modification [Evidence IMP] [PMID 15220327]; GO_process: GO:0002098 - tRNA wobble uridine modification [Evidence IMP] [PMID 18755837]; Nfs1p 461255 NFS1 30033253 NFS1 Sugiyamaella lignohabitans Nfs1p XP_018734395.1 459771 D 796027 CDS AWJ20_146 30033264 461730..462188 A 1 NC_031672.1 Tetrameric histone acetyltransferase; has similarity to Gcn5p, Hat1p, Elp3p, and Hpa3p; acetylates histones H3 and H4 in vitro and exhibits autoacetylation activity; also acetylates polyamines; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_function: GO:0008080 - N-acetyltransferase activity [Evidence IEA]; GO_function: GO:0004402 - histone acetyltransferase activity [Evidence IEA]; GO_function: GO:0004402 - histone acetyltransferase activity [Evidence ISS] [PMID 10600387]; GO_function: GO:0042803 - protein homodimerization activity [Evidence IDA] [PMID 10600387]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016746 - transferase activity, transferring acyl groups [Evidence IEA]; GO_process: GO:0016568 - chromatin modification [Evidence IEA]; GO_process: GO:0016573 - histone acetylation [Evidence ISS] [PMID 10600387]; GO_process: GO:0051289 - protein homotetramerization [Evidence IDA] [PMID 10600387]; Hpa2p 462188 HPA2 30033264 HPA2 Sugiyamaella lignohabitans Hpa2p XP_018734396.1 461730 D 796027 CDS AWJ20_147 30033275 complement(462286..464847) A 1 NC_031672.1 Component of the GTPase-activating Bfa1p-Bub2p complex; involved in multiple cell cycle checkpoint pathways that control exit from mitosis; specifically required when telomeres are damaged, but not for all types of chromosomal DNA damage; phosphorylated by the Polo-like kinase Cdc5p; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA]; GO_component: GO:0000922 - spindle pole [Evidence IEA]; GO_component: GO:0005816 - spindle pole body [Evidence IDA] [PMID 10220406]; GO_component: GO:0005816 - spindle pole body [Evidence IDA] [PMID 15147270]; GO_function: GO:0005096 - GTPase activator activity [Evidence IDA] [PMID 16682821]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0007067 - mitotic nuclear division [Evidence IEA]; GO_process: GO:0031578 - mitotic spindle orientation checkpoint [Evidence IGI,IMP] [PMID 16039591]; GO_process: GO:0007096 - regulation of exit from mitosis [Evidence IMP] [PMID 15147270]; Bfa1p 464847 BFA1 30033275 BFA1 Sugiyamaella lignohabitans Bfa1p XP_018734397.1 462286 R 796027 CDS AWJ20_148 30033286 complement(465170..468430) A 1 NC_031672.1 Kinesin-related motor protein; required for mitotic spindle assembly, chromosome segregation, and 2 micron plasmid partitioning; functionally redundant with Cin8p for chromosomal but not plasmid functions; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA]; GO_component: GO:0005871 - kinesin complex [Evidence IEA]; GO_component: GO:0005871 - kinesin complex [Evidence TAS] [PMID 9153752]; GO_component: GO:0005874 - microtubule [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_component: GO:0005819 - spindle [Evidence IEA]; GO_component: GO:0005876 - spindle microtubule [Evidence IDA] [PMID 1618910]; GO_component: GO:0005816 - spindle pole body [Evidence IDA] [PMID 9585415]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0008017 - microtubule binding [Evidence IEA]; GO_function: GO:0003777 - microtubule motor activity [Evidence IEA]; GO_function: GO:0003777 - microtubule motor activity [Evidence IGI] [PMID 1618910]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0005200 - structural constituent of cytoskeleton [Evidence IPI] [PMID 9585415]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0007019 - microtubule depolymerization [Evidence IMP] [PMID 19041752]; GO_process: GO:0007018 - microtubule-based movement [Evidence IEA]; GO_process: GO:0007067 - mitotic nuclear division [Evidence IEA]; GO_process: GO:0000070 - mitotic sister chromatid segregation [Evidence IGI] [PMID 7860634]; GO_process: GO:0000022 - mitotic spindle elongation [Evidence IMP] [PMID 9813090]; GO_process: GO:0030541 - plasmid partitioning [Evidence IMP] [PMID 19364922]; GO_process: GO:0090307 - spindle assembly involved in mitosis [Evidence IMP] [PMID 9813090]; GO_process: GO:0000073 - spindle pole body separation [Evidence IGI] [PMID 1618897]; GO_process: GO:0000073 - spindle pole body separation [Evidence IGI] [PMID 1618910]; Kip1p 468430 KIP1 30033286 KIP1 Sugiyamaella lignohabitans Kip1p XP_018734398.1 465170 R 796027 CDS AWJ20_149 30033297 complement(469640..470230) A 1 NC_031672.1 Protein required for ubiquinone (Coenzyme Q) biosynthesis; localizes to the matrix face of the mitochondrial inner membrane in a large complex with ubiquinone biosynthetic enzymes; required for gluconeogenic gene activation; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IDA] [PMID 9452453]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004497 - monooxygenase activity [Evidence ISS] [PMID 11435415]; GO_process: GO:0005975 - carbohydrate metabolic process [Evidence IEA]; GO_process: GO:0006094 - gluconeogenesis [Evidence IEA]; GO_process: GO:0006006 - glucose metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; GO_process: GO:0006744 - ubiquinone biosynthetic process [Evidence IEA,IEA,IEA]; GO_process: GO:0006744 - ubiquinone biosynthetic process [Evidence IMP] [PMID 9452453]; putative monooxygenase CAT5 470230 CAT5 30033297 CAT5 Sugiyamaella lignohabitans putative monooxygenase CAT5 XP_018734399.1 469640 R 796027 CDS AWJ20_150 30033309 472691..474421 A 1 NC_031672.1 calnexin 474421 CNE1 30033309 CNE1 Sugiyamaella lignohabitans calnexin XP_018734400.1 472691 D 796027 CDS AWJ20_151 30033320 475806..480002 A 1 NC_031672.1 Protein involved in bud-site selection; required for axial budding pattern; localizes with septins to bud neck in mitosis and may constitute an axial landmark for next round of budding; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 12972503]; GO_component: GO:0000142 - cellular bud neck contractile ring [Evidence IDA] [PMID 7730410]; GO_function: GO:0005089 - Rho guanyl-nucleotide exchange factor activity [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0007120 - axial cellular bud site selection [Evidence IMP] [PMID 2065354]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0032319 - regulation of Rho GTPase activity [Evidence IEA]; GO_process: GO:0035023 - regulation of Rho protein signal transduction [Evidence IEA]; Bud3p 480002 BUD3 30033320 BUD3 Sugiyamaella lignohabitans Bud3p XP_018734401.1 475806 D 796027 CDS AWJ20_152 30033331 complement(480361..481695) A 1 NC_031672.1 uncharacterized protein 481695 30033331 AWJ20_152 Sugiyamaella lignohabitans uncharacterized protein XP_018734402.1 480361 R 796027 CDS AWJ20_153 30033342 complement(488874..489359) A 1 NC_031672.1 Endoplasmic reticulum (ER) localized integral membrane protein; may promote secretion of certain hexose transporters, including Gal2p; involved in glucose-dependent repression; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0030176 - integral component of endoplasmic reticulum membrane [Evidence IDA] [PMID 10377429]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IDA] [PMID 16407407]; GO_function: GO:0051082 - unfolded protein binding [Evidence IMP] [PMID 15623581]; GO_process: GO:0006457 - protein folding [Evidence IMP] [PMID 15623581]; GO_process: GO:0034394 - protein localization to cell surface [Evidence IGI,IMP] [PMID 10377429]; Gsf2p 489359 GSF2 30033342 GSF2 Sugiyamaella lignohabitans Gsf2p XP_018734403.1 488874 R 796027 CDS AWJ20_154 30033353 492373..496050 A 1 NC_031672.1 Protein involved in pre-mRNA splicing; component of the pre-spliceosome; associates with U2 snRNA; involved in ER to Golgi transport; GO_component: GO:0005686 - U2 snRNP [Evidence IPI] [PMID 10369685]; GO_component: GO:0005686 - U2 snRNP [Evidence IDA] [PMID 15565172]; GO_component: GO:0005686 - U2 snRNP [Evidence IDA] [PMID 16314500]; GO_component: GO:0071004 - U2-type prespliceosome [Evidence IDA] [PMID 16618970]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005681 - spliceosomal complex [Evidence IEA]; GO_function: GO:0030620 - U2 snRNA binding [Evidence IPI] [PMID 10369685]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_process: GO:0008380 - RNA splicing [Evidence IEA]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0000398 - mRNA splicing, via spliceosome [Evidence IPI] [PMID 16314500]; GO_process: GO:0000398 - mRNA splicing, via spliceosome [Evidence IGI,IMP] [PMID 9819400]; GO_process: GO:0000245 - spliceosomal complex assembly [Evidence IDA] [PMID 10369685]; Rse1p 496050 RSE1 30033353 RSE1 Sugiyamaella lignohabitans Rse1p XP_018734404.1 492373 D 796027 CDS AWJ20_155 30033364 complement(496166..498571) A 1 NC_031672.1 Component of the SPS plasma membrane amino acid sensor system; senses external amino acid concentration and transmits intracellular signals that result in regulation of expression of amino acid permease genes; other members are Ssy1p, Ptr3p, and Ssy5p; GO_component: GO:0019897 - extrinsic component of plasma membrane [Evidence IDA] [PMID 10409731]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0043200 - response to amino acid [Evidence IMP] [PMID 10409731]; Ptr3p 498571 PTR3 30033364 PTR3 Sugiyamaella lignohabitans Ptr3p XP_018734405.1 496166 R 796027 CDS AWJ20_156 30033375 complement(499919..500650) A 1 NC_031672.1 hypothetical protein; required for normal localization of actin patches and for normal tolerance of sodium ions and hydrogen peroxide; localizes to both cytoplasm and nucleus; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; Apd1p 500650 APD1 30033375 APD1 Sugiyamaella lignohabitans Apd1p XP_018734406.1 499919 R 796027 CDS AWJ20_157 30033386 complement(501788..502357) A 1 NC_031672.1 uncharacterized protein 502357 30033386 AWJ20_157 Sugiyamaella lignohabitans uncharacterized protein XP_018734407.1 501788 R 796027 CDS AWJ20_158 30033397 complement(503259..504443) A 1 NC_031672.1 Fe(II)-dependent sulfonate/alpha-ketoglutarate dioxygenase; involved in sulfonate catabolism for use as a sulfur source; contains sequence that resembles a J domain (typified by the E. coli DnaJ protein); induced by sulphur starvation; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0051213 - dioxygenase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0000907 - sulfonate dioxygenase activity [Evidence IDA] [PMID 10482536]; GO_process: GO:0046306 - alkanesulfonate catabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0044273 - sulfur compound catabolic process [Evidence IMP] [PMID 10482536]; Jlp1p 504443 JLP1 30033397 JLP1 Sugiyamaella lignohabitans Jlp1p XP_018734408.1 503259 R 796027 CDS AWJ20_159 30033408 505286..506869 A 1 NC_031672.1 putative permease SEO1 506869 SEO1 30033408 SEO1 Sugiyamaella lignohabitans putative permease SEO1 XP_018734409.1 505286 D 796027 CDS AWJ20_160 30033420 507292..508113 A 1 NC_031672.1 uncharacterized protein 508113 30033420 AWJ20_160 Sugiyamaella lignohabitans uncharacterized protein XP_018734410.1 507292 D 796027 CDS AWJ20_161 30033431 509317..510801 A 1 NC_031672.1 glucose-inactivated glycerol proton symporter STL1 510801 STL1 30033431 STL1 Sugiyamaella lignohabitans glucose-inactivated glycerol proton symporter STL1 XP_018734411.1 509317 D 796027 CDS AWJ20_162 30033442 complement(511409..512173) A 1 NC_031672.1 Subunit of a complex with Ctf8p and Ctf18p; shares some components with Replication Factor C; required for sister chromatid cohesion and telomere length maintenance; GO_component: GO:0031390 - Ctf18 RFC-like complex [Evidence IPI] [PMID 11389843]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006260 - DNA replication [Evidence IEA]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IMP] [PMID 12482937]; GO_process: GO:0035753 - maintenance of DNA trinucleotide repeats [Evidence IMP] [PMID 21347277]; GO_process: GO:0007064 - mitotic sister chromatid cohesion [Evidence IMP] [PMID 11389843]; GO_process: GO:0007064 - mitotic sister chromatid cohesion [Evidence IGI] [PMID 17483413]; Dcc1p 512173 DCC1 30033442 DCC1 Sugiyamaella lignohabitans Dcc1p XP_018734412.1 511409 R 796027 CDS AWJ20_163 30033453 512409..515585 A 1 NC_031672.1 DNA-dependent ATPase that stimulates strand exchange; modifies the topology of double-stranded DNA; involved in the recombinational repair of double-strand breaks in DNA during vegetative growth and meiosis; member of the SWI/SNF family of DNA translocases; forms nuclear foci upon DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IMP] [PMID 12399378]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0015616 - DNA translocase activity [Evidence IDA] [PMID 10506208]; GO_function: GO:0008094 - DNA-dependent ATPase activity [Evidence IDA] [PMID 10506208]; GO_function: GO:0004386 - helicase activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016817 - hydrolase activity, acting on acid anhydrides [Evidence IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0032392 - DNA geometric change [Evidence IDA] [PMID 10506208]; GO_process: GO:0006281 - DNA repair [Evidence IEA]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0006338 - chromatin remodeling [Evidence IDA] [PMID 12577053]; GO_process: GO:0045002 - double-strand break repair via single-strand annealing [Evidence IMP] [PMID 8849880]; GO_process: GO:0045003 - double-strand break repair via synthesis-dependent strand annealing [Evidence TAS] [PMID 10357855]; GO_process: GO:0030491 - heteroduplex formation [Evidence IDA] [PMID 10506208]; GO_process: GO:0032079 - positive regulation of endodeoxyribonuclease activity [Evidence IDA] [PMID 19129197]; GO_process: GO:0000722 - telomere maintenance via recombination [Evidence IMP] [PMID 11238918]; DNA-dependent ATPase RAD54 515585 RAD54 30033453 RAD54 Sugiyamaella lignohabitans DNA-dependent ATPase RAD54 XP_018734413.1 512409 D 796027 CDS AWJ20_164 30033464 complement(515730..521126) A 1 NC_031672.1 Alpha subunit of fatty acid synthetase; complex catalyzes the synthesis of long-chain saturated fatty acids; contains the acyl-carrier protein domain and beta-ketoacyl reductase, beta-ketoacyl synthase and self-pantetheinylation activities; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 6025308]; GO_component: GO:0005835 - fatty acid synthase complex [Evidence IDA] [PMID 65153]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0004316 - 3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity [Evidence IEA]; GO_function: GO:0004316 - 3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity [Evidence IDA] [PMID 365179]; GO_function: GO:0004315 - 3-oxoacyl-[acyl-carrier-protein] synthase activity [Evidence IEA]; GO_function: GO:0004315 - 3-oxoacyl-[acyl-carrier-protein] synthase activity [Evidence IMP] [PMID 1100391]; GO_function: GO:0003824 - catalytic activity [Evidence IEA,IEA]; GO_function: GO:0004312 - fatty acid synthase activity [Evidence IGI] [PMID 10785388]; GO_function: GO:0004312 - fatty acid synthase activity [Evidence IMP] [PMID 65153]; GO_function: GO:0004321 - fatty-acyl-CoA synthase activity [Evidence IEA]; GO_function: GO:0008897 - holo-[acyl-carrier-protein] synthase activity [Evidence IEA]; GO_function: GO:0008897 - holo-[acyl-carrier-protein] synthase activity [Evidence IGI,IMP] [PMID 10785388]; GO_function: GO:0000287 - magnesium ion binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA,IEA]; GO_process: GO:0006633 - fatty acid biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0006631 - fatty acid metabolic process [Evidence IEA]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0042759 - long-chain fatty acid biosynthetic process [Evidence IMP] [PMID 1735446]; GO_process: GO:0009059 - macromolecule biosynthetic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA,IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; trifunctional fatty acid synthase subunit FAS2 521126 FAS2 30033464 FAS2 Sugiyamaella lignohabitans trifunctional fatty acid synthase subunit FAS2 XP_018734414.1 515730 R 796027 CDS AWJ20_165 30033475 complement(522891..524120) A 1 NC_031672.1 ER membrane glycoprotein subunit of the GPI transamidase complex; adds glycosylphosphatidylinositol (GPI) anchors to newly synthesized proteins; human PIG-K protein is a functional homolog; GO_component: GO:0042765 - GPI-anchor transamidase complex [Evidence IEA]; GO_component: GO:0042765 - GPI-anchor transamidase complex [Evidence IDA] [PMID 11598210]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IDA] [PMID 8978684]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0003923 - GPI-anchor transamidase activity [Evidence IEA]; GO_function: GO:0003923 - GPI-anchor transamidase activity [Evidence IMP] [PMID 10793132]; GO_function: GO:0003923 - GPI-anchor transamidase activity [Evidence IMP] [PMID 11598210]; GO_function: GO:0004197 - cysteine-type endopeptidase activity [Evidence IEA]; GO_function: GO:0008234 - cysteine-type peptidase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_process: GO:0006506 - GPI anchor biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0016255 - attachment of GPI anchor to protein [Evidence IEA]; GO_process: GO:0016255 - attachment of GPI anchor to protein [Evidence IMP] [PMID 11598210]; GO_process: GO:0006508 - proteolysis [Evidence IEA,IEA]; Gpi8p 524120 GPI8 30033475 GPI8 Sugiyamaella lignohabitans Gpi8p XP_018734415.1 522891 R 796027 CDS AWJ20_166 30033486 525252..527288 A 1 NC_031672.1 Putative RNA helicase of the DEAH/D-box family; null mutant displays increased levels of spontaneous Rad52p foci; green fluorescent protein (GFP)-fusion protein localizes to the mitochondrion; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004004 - ATP-dependent RNA helicase activity [Evidence ISS] [PMID 10322435]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0004386 - helicase activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA,IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0008152 - metabolic process [Evidence IEA,IEA]; Irc3p 527288 IRC3 30033486 IRC3 Sugiyamaella lignohabitans Irc3p XP_018734416.1 525252 D 796027 CDS AWJ20_167 30033497 527434..529569 A 1 NC_031672.1 Zinc transport protein zntB 529569 30033497 AWJ20_167 Sugiyamaella lignohabitans Zinc transport protein zntB XP_018734417.1 527434 D 796027 CDS AWJ20_168 30033508 complement(529766..531430) A 1 NC_031672.1 UBX domain-containing protein that interacts with Cdc48p; ubiquitin regulatory X is also known as UBX; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0043161 - proteasome-mediated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 21211725]; Ubx5p 531430 UBX5 30033508 UBX5 Sugiyamaella lignohabitans Ubx5p XP_018734418.1 529766 R 796027 CDS AWJ20_169 30033519 533331..534845 A 1 NC_031672.1 High affinity nicotinic acid plasma membrane permease; responsible for uptake of low levels of nicotinic acid; expression of the gene increases in the absence of extracellular nicotinic acid or para-aminobenzoate (PABA); GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0005887 - integral component of plasma membrane [Evidence ISS] [PMID 9678606]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0015663 - nicotinamide mononucleotide transmembrane transporter activity [Evidence IMP] [PMID 10869563]; GO_process: GO:0015890 - nicotinamide mononucleotide transport [Evidence IEP,IMP] [PMID 10869563]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Tna1p 534845 TNA1 30033519 TNA1 Sugiyamaella lignohabitans Tna1p XP_018734419.1 533331 D 796027 CDS AWJ20_170 30033531 535821..536402 A 1 NC_031672.1 AAT-domain-containing protein 536402 30033531 AWJ20_170 Sugiyamaella lignohabitans AAT-domain-containing protein XP_018734420.1 535821 D 796027 CDS AWJ20_171 30033542 complement(537433..538800) A 1 NC_031672.1 Mitochondrial translation release factor; involved in stop codon recognition and hydrolysis of the peptidyl-tRNA bond during mitochondrial translation; lack of MRF1 causes mitochondrial genome instability; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 11502169]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IMP] [PMID 1475194]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 8265342]; GO_function: GO:0003747 - translation release factor activity [Evidence IEA]; GO_function: GO:0003747 - translation release factor activity [Evidence IDA] [PMID 10748224]; GO_function: GO:0003747 - translation release factor activity [Evidence IGI] [PMID 1475194]; GO_function: GO:0016149 - translation release factor activity, codon specific [Evidence IEA]; GO_process: GO:0032543 - mitochondrial translation [Evidence IMP] [PMID 14734569]; GO_process: GO:0070126 - mitochondrial translational termination [Evidence IGI] [PMID 1475194]; GO_process: GO:0070126 - mitochondrial translational termination [Evidence IMP] [PMID 15827612]; GO_process: GO:0006412 - translation [Evidence IEA]; GO_process: GO:0006415 - translational termination [Evidence IEA]; GO_process: GO:0006415 - translational termination [Evidence IMP] [PMID 1475194]; Mrf1p 538800 MRF1 30033542 MRF1 Sugiyamaella lignohabitans Mrf1p XP_018734421.1 537433 R 796027 CDS AWJ20_172 30033553 539360..539953 A 1 NC_031672.1 uncharacterized protein 539953 30033553 AWJ20_172 Sugiyamaella lignohabitans uncharacterized protein XP_018734422.1 539360 D 796027 CDS AWJ20_173 30033564 complement(540086..541918) A 1 NC_031672.1 histone methyltransferase DOT1 541918 DOT1 30033564 DOT1 Sugiyamaella lignohabitans histone methyltransferase DOT1 XP_018734423.1 540086 R 796027 CDS AWJ20_174 30033575 542581..544245 A 1 NC_031672.1 Integral membrane protein involved in GPI anchor synthesis; putative alpha 1,2 mannosyltransferase required for addition of the third mannose onto the glycosylphosphatidylinositol (GPI) core structure; human PIG-Bp is a functional homolog; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016021 - integral component of membrane [Evidence ISS] [PMID 9639537]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0004584 - dolichyl-phosphate-mannose-glycolipid alpha-mannosyltransferase activity [Evidence IMP] [PMID 9576863]; GO_function: GO:0004584 - dolichyl-phosphate-mannose-glycolipid alpha-mannosyltransferase activity [Evidence IMP] [PMID 9639537]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA,IEA]; GO_process: GO:0006506 - GPI anchor biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0006506 - GPI anchor biosynthetic process [Evidence IMP] [PMID 9759715]; Gpi10p 544245 GPI10 30033575 GPI10 Sugiyamaella lignohabitans Gpi10p XP_018734424.1 542581 D 796027 CDS AWJ20_175 30033586 complement(544341..545237) A 1 NC_031672.1 Uracil-DNA glycosylase; required for repair of uracil in DNA formed by spontaneous cytosine deamination; efficiently excises uracil from single-stranded DNA in vivo; not required for strand-specific mismatch repair; cell-cycle regulated, expressed in late G1; localizes to mitochondria and nucleus; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 11812822]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 24034606]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11812822]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 24034606]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016798 - hydrolase activity, acting on glycosyl bonds [Evidence IEA]; GO_function: GO:0016799 - hydrolase activity, hydrolyzing N-glycosyl compounds [Evidence IEA]; GO_function: GO:0004844 - uracil DNA N-glycosylase activity [Evidence IEA,IEA]; GO_function: GO:0004844 - uracil DNA N-glycosylase activity [Evidence IDA] [PMID 2644266]; GO_process: GO:0006281 - DNA repair [Evidence IEA,IEA]; GO_process: GO:0006281 - DNA repair [Evidence IMP] [PMID 1938887]; GO_process: GO:0006284 - base-excision repair [Evidence IEA,IEA]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; Ung1p 545237 UNG1 30033586 UNG1 Sugiyamaella lignohabitans Ung1p XP_018734425.1 544341 R 796027 CDS AWJ20_176 30033597 complement(546078..547541) A 1 NC_031672.1 Peripherally bound inner membrane protein of the mitochondrial matrix; involved in membrane insertion of C-terminus of Cox2p, interacts genetically and physically with Cox18p; GO_component: GO:0031314 - extrinsic component of mitochondrial inner membrane [Evidence IDA] [PMID 11604502]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005759 - mitochondrial matrix [Evidence IDA] [PMID 11604502]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0032979 - protein insertion into mitochondrial membrane from inner side [Evidence IMP] [PMID 11604502]; GO_process: GO:0032979 - protein insertion into mitochondrial membrane from inner side [Evidence IGI,IPI] [PMID 11950926]; GO_process: GO:0032979 - protein insertion into mitochondrial membrane from inner side [Evidence IPI] [PMID 17452441]; Mss2p 547541 MSS2 30033597 MSS2 Sugiyamaella lignohabitans Mss2p XP_018734426.1 546078 R 796027 CDS AWJ20_177 30033608 553718..558487 A 1 NC_031672.1 SWI/SNF catalytic subunit SNF2 558487 SNF2 30033608 SNF2 Sugiyamaella lignohabitans SWI/SNF catalytic subunit SNF2 XP_018734427.1 553718 D 796027 CDS AWJ20_178 30033619 564683..569263 A 1 NC_031672.1 ATPase and nucleosome spacing factor; subunit of complex containing actin and actin-related proteins that has chromatin remodeling activity and 3' to 5' DNA helicase activity in vitro; promotes nucleosome shifts in the 3 prime direction; has a role in modulating stress gene transcription; GO_component: GO:0031011 - Ino80 complex [Evidence IDA] [PMID 10361278]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0043140 - ATP-dependent 3'-5' DNA helicase activity [Evidence IDA] [PMID 10952318]; GO_function: GO:0016887 - ATPase activity [Evidence IDA] [PMID 10952318]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0004386 - helicase activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016817 - hydrolase activity, acting on acid anhydrides [Evidence IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006281 - DNA repair [Evidence IEA]; GO_process: GO:0006281 - DNA repair [Evidence IDA,IMP] [PMID 10952318]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0016568 - chromatin modification [Evidence IEA]; GO_process: GO:0006338 - chromatin remodeling [Evidence IDA] [PMID 10952318]; GO_process: GO:0006338 - chromatin remodeling [Evidence IMP] [PMID 23207916]; GO_process: GO:0006348 - chromatin silencing at telomere [Evidence IMP] [PMID 18258182]; GO_process: GO:0043486 - histone exchange [Evidence IDA] [PMID 21241891]; GO_process: GO:0042766 - nucleosome mobilization [Evidence IMP] [PMID 17681272]; GO_process: GO:0016584 - nucleosome positioning [Evidence IDA] [PMID 21135121]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 17681272]; GO_process: GO:0051983 - regulation of chromosome segregation [Evidence IMP] [PMID 23207916]; GO_process: GO:0043618 - regulation of transcription from RNA polymerase II promoter in response to stress [Evidence IMP] [PMID 19620280]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0000722 - telomere maintenance via recombination [Evidence IGI] [PMID 23390378]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IDA,IMP] [PMID 10952318]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; chromatin-remodeling ATPase INO80 569263 INO80 30033619 INO80 Sugiyamaella lignohabitans chromatin-remodeling ATPase INO80 XP_018734428.1 564683 D 796027 CDS AWJ20_179 30033630 570091..572439 A 1 NC_031672.1 Nucleotide pyrophosphatase/phosphodiesterase; mediates extracellular nucleotide phosphate hydrolysis along with Npp2p and Pho5p; activity and expression enhanced during conditions of phosphate starvation; involved in spore wall assembly; NPP1 has a paralog, NPP2, that arose from the whole genome duplication, and an npp1 npp2 double mutant exhibits reduced dityrosine fluorescence relative to the single mutants; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_function: GO:0035529 - NADH pyrophosphatase activity [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IGI,IMP] [PMID 16278456]; GO_function: GO:0047429 - nucleoside-triphosphate diphosphatase activity [Evidence IDA,IGI,IMP] [PMID 16278456]; GO_function: GO:0004551 - nucleotide diphosphatase activity [Evidence IEA]; GO_function: GO:0004551 - nucleotide diphosphatase activity [Evidence ISS] [PMID 16278456]; GO_function: GO:0004528 - phosphodiesterase I activity [Evidence IEA]; GO_function: GO:0004528 - phosphodiesterase I activity [Evidence ISS] [PMID 16278456]; GO_process: GO:0016036 - cellular response to phosphate starvation [Evidence IEP,IMP] [PMID 16278456]; GO_process: GO:0008152 - metabolic process [Evidence IEA,IEA]; GO_process: GO:0090305 - nucleic acid phosphodiester bond hydrolysis [Evidence IEA]; GO_process: GO:0009141 - nucleoside triphosphate metabolic process [Evidence IMP] [PMID 16278456]; GO_process: GO:0006796 - phosphate-containing compound metabolic process [Evidence ISS] [PMID 16278456]; Npp1p 572439 NPP1 30033630 NPP1 Sugiyamaella lignohabitans Npp1p XP_018734429.1 570091 D 796027 CDS AWJ20_180 30033642 complement(572597..574318) A 1 NC_031672.1 hypothetical protein with low sequence identity to Pdc1p; mRNA identified as translated by ribosome profiling data; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0016831 - carboxy-lyase activity [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016829 - lyase activity [Evidence IEA]; GO_function: GO:0000287 - magnesium ion binding [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0030976 - thiamine pyrophosphate binding [Evidence IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0008152 - metabolic process [Evidence IEA,IEA]; putative indolepyruvate decarboxylase family protein 574318 30033642 AWJ20_180 Sugiyamaella lignohabitans putative indolepyruvate decarboxylase family protein XP_018734430.1 572597 R 796027 CDS AWJ20_181 30033653 complement(575899..576312) A 1 NC_031672.1 Core component of transport protein particle (TRAPP) complexes I-III; TRAPP complexes are related multimeric guanine nucleotide-exchange factors for the GTPase Ypt1, regulating ER-Golgi traffic (TRAPPI), intra-Golgi traffic (TRAPPII), endosome-Golgi traffic (TRAPPII and III) and autophagy (TRAPPIII); hydrophilic homodimeric protein that acts in conjunction with SNARE proteins in targeting and fusion of ER to Golgi transport vesicles; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA,IEA]; GO_component: GO:1990070 - TRAPPI protein complex [Evidence IDA] [PMID 11239471]; GO_component: GO:1990071 - TRAPPII protein complex [Evidence IDA] [PMID 11239471]; GO_component: GO:1990072 - TRAPPIII protein complex [Evidence IDA] [PMID 20375281]; GO_component: GO:0033106 - cis-Golgi network membrane [Evidence IDA] [PMID 9564032]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA,IEA]; GO_component: GO:0000407 - pre-autophagosomal structure [Evidence IEA]; GO_function: GO:0017112 - Rab guanyl-nucleotide exchange factor activity [Evidence IGI] [PMID 11102533]; GO_function: GO:0017112 - Rab guanyl-nucleotide exchange factor activity [Evidence IGI] [PMID 17041589]; GO_function: GO:0017112 - Rab guanyl-nucleotide exchange factor activity [Evidence IDA] [PMID 17110339]; GO_function: GO:0017112 - Rab guanyl-nucleotide exchange factor activity [Evidence IMP] [PMID 17287728]; GO_function: GO:0017112 - Rab guanyl-nucleotide exchange factor activity [Evidence IGI] [PMID 8590804]; GO_process: GO:0006888 - ER to Golgi vesicle-mediated transport [Evidence IMP] [PMID 11239471]; GO_process: GO:0006888 - ER to Golgi vesicle-mediated transport [Evidence IGI,IMP] [PMID 8590804]; GO_process: GO:0006914 - autophagy [Evidence IEA]; GO_process: GO:0006891 - intra-Golgi vesicle-mediated transport [Evidence IMP] [PMID 11239471]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IEA]; TRAPP complex core subunit BET3 576312 BET3 30033653 BET3 Sugiyamaella lignohabitans TRAPP complex core subunit BET3 XP_018734431.1 575899 R 796027 CDS AWJ20_182 30033664 576947..578164 A 1 NC_031672.1 Mevalonate kinase; acts in the biosynthesis of isoprenoids and sterols, including ergosterol, from mevalonate; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016301 - kinase activity [Evidence IEA,IEA]; GO_function: GO:0004496 - mevalonate kinase activity [Evidence IEA,IEA]; GO_function: GO:0004496 - mevalonate kinase activity [Evidence IDA] [PMID 16477420]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016773 - phosphotransferase activity, alcohol group as acceptor [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006696 - ergosterol biosynthetic process [Evidence IMP] [PMID 200835]; GO_process: GO:0010142 - farnesyl diphosphate biosynthetic process, mevalonate pathway [Evidence IMP] [PMID 200835]; GO_process: GO:0019287 - isopentenyl diphosphate biosynthetic process, mevalonate pathway [Evidence IEA]; GO_process: GO:0019287 - isopentenyl diphosphate biosynthetic process, mevalonate pathway [Evidence IMP] [PMID 200835]; GO_process: GO:0008299 - isoprenoid biosynthetic process [Evidence IEA]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; GO_process: GO:0006694 - steroid biosynthetic process [Evidence IEA]; GO_process: GO:0008202 - steroid metabolic process [Evidence IEA]; GO_process: GO:0016126 - sterol biosynthetic process [Evidence IEA]; mevalonate kinase 578164 ERG12 30033664 ERG12 Sugiyamaella lignohabitans mevalonate kinase XP_018734432.1 576947 D 796027 CDS AWJ20_183 30033675 complement(578378..579361) A 1 NC_031672.1 Putative protein; predicted to be an alpha-isopropylmalate carrier; belongs to the sideroblastic-associated protein family; non-tagged protein is detected in purified mitochondria; likely to play a role in iron homeostasis; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0031966 - mitochondrial membrane [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0008324 - cation transmembrane transporter activity [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0006812 - cation transport [Evidence IEA]; GO_process: GO:0006811 - ion transport [Evidence IEA]; GO_process: GO:0055072 - iron ion homeostasis [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Fsf1p 579361 FSF1 30033675 FSF1 Sugiyamaella lignohabitans Fsf1p XP_018734433.1 578378 R 796027 CDS AWJ20_184 30033686 complement(580465..582048) A 1 NC_031672.1 GMP synthase; highly conserved enzyme that catalyzes the second step in the biosynthesis of GMP from inosine 5'-phosphate (IMP); transcription is not subject to regulation by guanine but is negatively regulated by nutrient starvation; reduction-of-function mutation gua1-G388D causes changes in cellular guanine nucleotide pools, defects in general protein synthesis, and impaired translation of GCN4 mRNA; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0003922 - GMP synthase (glutamine-hydrolyzing) activity [Evidence IEA,IEA]; GO_function: GO:0003922 - GMP synthase (glutamine-hydrolyzing) activity [Evidence IMP,ISS] [PMID 8112582]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016462 - pyrophosphatase activity [Evidence IEA]; GO_process: GO:0006177 - GMP biosynthetic process [Evidence IEA,IEA,IEA]; GO_process: GO:0006177 - GMP biosynthetic process [Evidence IMP] [PMID 20980241]; GO_process: GO:0006541 - glutamine metabolic process [Evidence IEA]; GO_process: GO:0006164 - purine nucleotide biosynthetic process [Evidence IEA,IEA]; GMP synthase (glutamine-hydrolyzing) 582048 GUA1 30033686 GUA1 Sugiyamaella lignohabitans GMP synthase (glutamine-hydrolyzing) XP_018734434.1 580465 R 796027 CDS AWJ20_185 30033697 582904..583980 A 1 NC_031672.1 Alpha subunit of farnesyltransferase and geranylgeranyltransferase-I; farnesyltransferase (RAM2-RAM1 heterodimer) catalyzes the addition of 15-carbon isoprenoid farnesyl to substrate proteins containing a CAAX consensus motif; type I geranylgeranyltransferase (RAM2-CDC43 heterodimer) catalyzes the addition of the 20-carbon isoprenoid geranylgeranyl to substrate proteins containing a CaaL consensus motif; required for membrane localization of Ras proteins and a-factor; GO_component: GO:0005953 - CAAX-protein geranylgeranyltransferase complex [Evidence IDA] [PMID 1400380]; GO_component: GO:0005965 - protein farnesyltransferase complex [Evidence IDA] [PMID 1763050]; GO_function: GO:0004662 - CAAX-protein geranylgeranyltransferase activity [Evidence IEA]; GO_function: GO:0004662 - CAAX-protein geranylgeranyltransferase activity [Evidence IDA] [PMID 1400380]; GO_function: GO:0004659 - prenyltransferase activity [Evidence IEA]; GO_function: GO:0004660 - protein farnesyltransferase activity [Evidence IEA]; GO_function: GO:0004660 - protein farnesyltransferase activity [Evidence IDA] [PMID 1763050]; GO_function: GO:0004661 - protein geranylgeranyltransferase activity [Evidence IDA] [PMID 2034682]; GO_function: GO:0008318 - protein prenyltransferase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0007323 - peptide pheromone maturation [Evidence IDA] [PMID 1763050]; GO_process: GO:0018343 - protein farnesylation [Evidence IDA] [PMID 1763050]; GO_process: GO:0018344 - protein geranylgeranylation [Evidence IDA] [PMID 1400380]; GO_process: GO:0018342 - protein prenylation [Evidence IEA]; bifunctional protein farnesyltransferase/protein geranylgeranyltransferase 583980 RAM2 30033697 RAM2 Sugiyamaella lignohabitans bifunctional protein farnesyltransferase/protein geranylgeranyltransferase XP_018734435.1 582904 D 796027 CDS AWJ20_186 30033708 complement(584733..585803) A 1 NC_031672.1 Catabolic L-serine (L-threonine) deaminase; catalyzes the degradation of both L-serine and L-threonine; required to use serine or threonine as the sole nitrogen source, transcriptionally induced by serine and threonine; GO_component: GO:0042645 - mitochondrial nucleoid [Evidence IDA] [PMID 15692048]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0003941 - L-serine ammonia-lyase activity [Evidence IEA]; GO_function: GO:0003941 - L-serine ammonia-lyase activity [Evidence IDA] [PMID 7042346]; GO_function: GO:0004794 - L-threonine ammonia-lyase activity [Evidence IEA]; GO_function: GO:0004794 - L-threonine ammonia-lyase activity [Evidence IDA] [PMID 7042346]; GO_function: GO:0016829 - lyase activity [Evidence IEA]; GO_function: GO:0030170 - pyridoxal phosphate binding [Evidence IEA]; GO_process: GO:0006565 - L-serine catabolic process [Evidence IGI] [PMID 7042346]; GO_process: GO:0006520 - cellular amino acid metabolic process [Evidence IEA]; GO_process: GO:0006567 - threonine catabolic process [Evidence IGI] [PMID 7042346]; L-serine/L-threonine ammonia-lyase CHA1 585803 CHA1 30033708 CHA1 Sugiyamaella lignohabitans L-serine/L-threonine ammonia-lyase CHA1 XP_018734436.1 584733 R 796027 CDS AWJ20_187 30033719 complement(587294..589237) A 1 NC_031672.1 Putative GTPase; associates with free 60S ribosomal subunits in the nucleolus and is required for 60S ribosomal subunit biogenesis; constituent of 66S pre-ribosomal particles; member of the ODN family of nucleolar G-proteins; GO_component: GO:0005730 - nucleolus [Evidence IEA,IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 11112701]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 11583614]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 16861225]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 17443350]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 23212245]; GO_function: GO:0005525 - GTP binding [Evidence IEA,IEA]; GO_function: GO:0005525 - GTP binding [Evidence ISS] [PMID 11112701]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:1902626 - assembly of large subunit precursor of preribosome [Evidence IMP] [PMID 22735702]; GO_process: GO:0006364 - rRNA processing [Evidence IMP] [PMID 12773575]; GO_process: GO:0042273 - ribosomal large subunit biogenesis [Evidence IDA] [PMID 16888624]; GO_process: GO:0042273 - ribosomal large subunit biogenesis [Evidence IMP] [PMID 17443350]; GO_process: GO:0000054 - ribosomal subunit export from nucleus [Evidence IMP,IPI] [PMID 12773575]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; Nog1p 589237 NOG1 30033719 NOG1 Sugiyamaella lignohabitans Nog1p XP_018734437.1 587294 R 796027 CDS AWJ20_188 30033730 591808..592320 A 1 NC_031672.1 uncharacterized protein 592320 30033730 AWJ20_188 Sugiyamaella lignohabitans uncharacterized protein XP_018734438.1 591808 D 796027 CDS AWJ20_189 30033741 complement(592836..594251) A 1 NC_031672.1 Putative zinc finger protein; YPR013C is not an essential gene; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0003677 - DNA binding [Evidence IDA] [PMID 23012409]; GO_function: GO:0046872 - metal ion binding [Evidence IEA,IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19111667]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19158363]; GO_process: GO:0008150 - biological_process [Evidence ND]; Cmr3p 594251 CMR3 30033741 CMR3 Sugiyamaella lignohabitans Cmr3p XP_018734439.1 592836 R 796027 CDS AWJ20_190 30033753 599111..600202 A 1 NC_031672.1 histone N-acetyltransferase (predicted) 600202 30033753 AWJ20_190 Sugiyamaella lignohabitans histone N-acetyltransferase (predicted) XP_018734440.1 599111 D 796027 CDS AWJ20_191 30033763 607793..608863 A 1 NC_031672.1 Subunit of Golgi mannosyltransferase complex; this complex mediates elongation of the polysaccharide mannan backbone; forms a separate complex with Van1p that is also involved in backbone elongation; this complex also contains Anp1p, Mnn10p, Mnn11p, and Hoc1p; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA]; GO_component: GO:0000136 - alpha-1,6-mannosyltransferase complex [Evidence IPI] [PMID 9430634]; GO_component: GO:0005801 - cis-Golgi network [Evidence IDA] [PMID 9430634]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0000009 - alpha-1,6-mannosyltransferase activity [Evidence IDA] [PMID 19249370]; GO_function: GO:0000009 - alpha-1,6-mannosyltransferase activity [Evidence IDA] [PMID 9430634]; GO_process: GO:0006487 - protein N-linked glycosylation [Evidence IDA] [PMID 19249370]; GO_process: GO:0006487 - protein N-linked glycosylation [Evidence IDA] [PMID 9430634]; GO_process: GO:0006486 - protein glycosylation [Evidence IEA]; mannosyltransferase complex subunit MNN9 608863 MNN9 30033763 MNN9 Sugiyamaella lignohabitans mannosyltransferase complex subunit MNN9 XP_018734441.1 607793 D 796027 CDS AWJ20_192 30033774 610869..611369 A 1 NC_031672.1 Component of the p24 complex; role in misfolded protein quality control; binds to GPI anchor proteins and mediates their efficient transport from the ER to the Golgi; integral membrane protein that associates with endoplasmic reticulum-derived COPII-coated vesicles; GO_component: GO:0030134 - ER to Golgi transport vesicle [Evidence IDA] [PMID 11157978]; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 8862519]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISS] [PMID 8862519]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006888 - ER to Golgi vesicle-mediated transport [Evidence IPI] [PMID 11157978]; GO_process: GO:0006888 - ER to Golgi vesicle-mediated transport [Evidence IMP] [PMID 8862519]; GO_process: GO:0006621 - protein retention in ER lumen [Evidence IMP] [PMID 8862519]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; GO_process: GO:0016050 - vesicle organization [Evidence IGI,IMP] [PMID 8862519]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IEA]; Emp24p 611369 EMP24 30033774 EMP24 Sugiyamaella lignohabitans Emp24p XP_018734442.1 610869 D 796027 CDS AWJ20_193 30033785 complement(619707..621299) A 1 NC_031672.1 Putative plasma membrane permease; proposed to be involved in carboxylic acid uptake and repressed by thiamine; substrate of Dbf2p/Mob1p kinase; transcription is altered if mitochondrial dysfunction occurs; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 16850348]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISS] [PMID 10869563]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_function: GO:0005215 - transporter activity [Evidence ISS] [PMID 10869563]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence ISS] [PMID 10869563]; Thi73p 621299 THI73 30033785 THI73 Sugiyamaella lignohabitans Thi73p XP_018734443.1 619707 R 796027 CDS AWJ20_194 30033796 625900..628782 A 1 NC_031672.1 Subunit of NuA4, an essential histone H4/H2A acetyltransferase complex; conserved region at N-terminus is essential for interaction with the NPC (nucleosome core particle); required for autophagy; homologous to Drosophila Enhancer of Polycomb; coding sequence contains length polymorphisms in different strains; GO_component: GO:0035267 - NuA4 histone acetyltransferase complex [Evidence IEA]; GO_component: GO:0035267 - NuA4 histone acetyltransferase complex [Evidence IDA] [PMID 10911987]; GO_component: GO:0035267 - NuA4 histone acetyltransferase complex [Evidence IPI] [PMID 15485911]; GO_component: GO:0032777 - Piccolo NuA4 histone acetyltransferase complex [Evidence IEA]; GO_component: GO:0032777 - Piccolo NuA4 histone acetyltransferase complex [Evidence IDA] [PMID 12782659]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0004402 - histone acetyltransferase activity [Evidence IDA] [PMID 10911987]; GO_function: GO:0004402 - histone acetyltransferase activity [Evidence IDA] [PMID 17274630]; GO_process: GO:0006281 - DNA repair [Evidence IEA]; GO_process: GO:0006281 - DNA repair [Evidence IDA] [PMID 15610740]; GO_process: GO:0006281 - DNA repair [Evidence IDA] [PMID 16135807]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0016573 - histone acetylation [Evidence IDA] [PMID 10911987]; GO_process: GO:0016239 - positive regulation of macroautophagy [Evidence IMP] [PMID 22539722]; GO_process: GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence IDA] [PMID 10911987]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Epl1p 628782 EPL1 30033796 EPL1 Sugiyamaella lignohabitans Epl1p XP_018734444.1 625900 D 796027 CDS AWJ20_195 30033807 630824..631774 A 1 NC_031672.1 Nuclear protein required for transcription of MXR1; binds the MXR1 promoter in the presence of other nuclear factors; binds calcium and phospholipids; has similarity to translational cofactor EF-1 gamma; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005853 - eukaryotic translation elongation factor 1 complex [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 12824466]; GO_function: GO:0005509 - calcium ion binding [Evidence IDA] [PMID 8465602]; GO_function: GO:0005543 - phospholipid binding [Evidence IDA] [PMID 8465602]; GO_function: GO:0003713 - transcription coactivator activity [Evidence IMP] [PMID 12824466]; GO_function: GO:0003746 - translation elongation factor activity [Evidence IEA,IEA]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 12824466]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IGI] [PMID 8041634]; GO_process: GO:0006412 - translation [Evidence IEA]; GO_process: GO:0006414 - translational elongation [Evidence IEA,IEA,IEA]; Cam1p 631774 CAM1 30033807 CAM1 Sugiyamaella lignohabitans Cam1p XP_018734445.1 630824 D 796027 CDS AWJ20_196 30033818 complement(632487..634517) A 1 NC_031672.1 uncharacterized protein 634517 30033818 AWJ20_196 Sugiyamaella lignohabitans uncharacterized protein XP_018734446.1 632487 R 796027 CDS AWJ20_197 30033829 complement(637237..640779) A 1 NC_031672.1 mitotic regulator LTE1 640779 LTE1 30033829 LTE1 Sugiyamaella lignohabitans mitotic regulator LTE1 XP_018734447.1 637237 R 796027 CDS AWJ20_198 30033840 complement(643165..644724) A 1 NC_031672.1 uncharacterized protein 644724 30033840 AWJ20_198 Sugiyamaella lignohabitans uncharacterized protein XP_018734448.1 643165 R 796027 CDS AWJ20_199 30033851 646449..649100 A 1 NC_031672.1 Actin- and formin-interacting protein; participates in actin cable assembly and organization as a nucleation-promoting factor (NPF) for formins Bni1p and Bnr1p; a triple helical coiled-coil domain in the C-terminal region interacts with Bni1p; involved in polarized cell growth; isolated as bipolar budding mutant; potential Cdc28p substrate; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 11071900]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 23671312]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 9247651]; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 11071900]; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 23671312]; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 9247651]; GO_component: GO:0000131 - incipient cellular bud site [Evidence IDA] [PMID 11071900]; GO_component: GO:0000131 - incipient cellular bud site [Evidence IDA] [PMID 9247651]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 19053807]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 9082982]; GO_component: GO:0000133 - polarisome [Evidence IDA] [PMID 9632790]; GO_component: GO:0005628 - prospore membrane [Evidence IDA] [PMID 24390141]; GO_component: GO:0005816 - spindle pole body [Evidence IDA] [PMID 17416900]; GO_function: GO:0003779 - actin binding [Evidence IDA] [PMID 7719850]; GO_function: GO:0003779 - actin binding [Evidence IDA] [PMID 9247651]; GO_function: GO:0005519 - cytoskeletal regulatory protein binding [Evidence IPI] [PMID 15923184]; GO_function: GO:0005519 - cytoskeletal regulatory protein binding [Evidence IDA] [PMID 9082982]; GO_function: GO:0008047 - enzyme activator activity [Evidence IMP] [PMID 23671312]; GO_process: GO:0051017 - actin filament bundle assembly [Evidence IGI,IMP] [PMID 23671312]; GO_process: GO:0030953 - astral microtubule organization [Evidence IMP] [PMID 22608510]; GO_process: GO:0007121 - bipolar cellular bud site selection [Evidence IMP] [PMID 8657162]; GO_process: GO:0007121 - bipolar cellular bud site selection [Evidence IMP] [PMID 9247651]; GO_process: GO:0007118 - budding cell apical bud growth [Evidence IGI,IMP] [PMID 10866679]; GO_process: GO:0030010 - establishment of cell polarity [Evidence IMP] [PMID 9247651]; GO_process: GO:0034652 - extrachromosomal circular DNA localization involved in cell aging [Evidence IMP] [PMID 18660802]; GO_process: GO:2000251 - positive regulation of actin cytoskeleton reorganization [Evidence IGI,IMP] [PMID 17237521]; GO_process: GO:0090338 - positive regulation of formin-nucleated actin cable assembly [Evidence IDA,IGI] [PMID 14657240]; GO_process: GO:0090338 - positive regulation of formin-nucleated actin cable assembly [Evidence IDA] [PMID 15923184]; GO_process: GO:0007124 - pseudohyphal growth [Evidence IMP] [PMID 24603354]; GO_process: GO:0032880 - regulation of protein localization [Evidence IMP] [PMID 10085294]; Bud6p 649100 BUD6 30033851 BUD6 Sugiyamaella lignohabitans Bud6p XP_018734449.1 646449 D 796027 CDS AWJ20_200 30033864 complement(649389..652592) A 1 NC_031672.1 Reverse transcriptase subunit of the telomerase holoenzyme; essential for telomerase core catalytic activity, involved in other aspects of telomerase assembly and function; mutations in human homolog are associated with aplastic anemia; GO_component: GO:0005694 - chromosome [Evidence IEA]; GO_component: GO:0000781 - chromosome, telomeric region [Evidence IEA,IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 12101098]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 12101098]; GO_component: GO:0000333 - telomerase catalytic core complex [Evidence IDA,IPI] [PMID 15813705]; GO_component: GO:0005697 - telomerase holoenzyme complex [Evidence IDA,IPI] [PMID 10898986]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003964 - RNA-directed DNA polymerase activity [Evidence IEA,IEA,IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016779 - nucleotidyltransferase activity [Evidence IEA]; GO_function: GO:0003720 - telomerase activity [Evidence IDA] [PMID 15813705]; GO_function: GO:0042162 - telomeric DNA binding [Evidence IDA] [PMID 17656141]; GO_function: GO:0003721 - telomeric template RNA reverse transcriptase activity [Evidence IEA]; GO_function: GO:0003721 - telomeric template RNA reverse transcriptase activity [Evidence TAS] [PMID 11884619]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006278 - RNA-dependent DNA replication [Evidence IEA]; GO_process: GO:0001302 - replicative cell aging [Evidence IGI] [PMID 18627461]; GO_process: GO:0007004 - telomere maintenance via telomerase [Evidence IDA,IMP] [PMID 15813705]; GO_process: GO:0007004 - telomere maintenance via telomerase [Evidence IMP] [PMID 8978029]; Est2p 652592 EST2 30033864 EST2 Sugiyamaella lignohabitans Est2p XP_018734450.1 649389 R 796027 CDS AWJ20_201 30033875 652819..653895 A 1 NC_031672.1 Component of the RSC chromatin remodeling complex; essential gene required for cell cycle progression and maintenance of proper ploidy; phosphorylated in the G1 phase of the cell cycle; Snf5p paralog; GO_component: GO:0016586 - RSC complex [Evidence IDA] [PMID 10619019]; GO_component: GO:0016586 - RSC complex [Evidence IDA] [PMID 12183366]; GO_component: GO:0016586 - RSC complex [Evidence IDA] [PMID 9154831]; GO_component: GO:0000228 - nuclear chromosome [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0015616 - DNA translocase activity [Evidence IDA] [PMID 12183366]; GO_function: GO:0015616 - DNA translocase activity [Evidence IDA] [PMID 16455496]; GO_function: GO:0015616 - DNA translocase activity [Evidence IDA] [PMID 17188033]; GO_function: GO:0015616 - DNA translocase activity [Evidence IDA] [PMID 17918861]; GO_process: GO:0043044 - ATP-dependent chromatin remodeling [Evidence IDA] [PMID 12183366]; GO_process: GO:0000086 - G2/M transition of mitotic cell cycle [Evidence IMP] [PMID 17542652]; GO_process: GO:0000086 - G2/M transition of mitotic cell cycle [Evidence IMP] [PMID 9154831]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0016568 - chromatin modification [Evidence IEA]; GO_process: GO:0006338 - chromatin remodeling [Evidence IEA]; GO_process: GO:0031055 - chromatin remodeling at centromere [Evidence IMP] [PMID 12697820]; GO_process: GO:0007059 - chromosome segregation [Evidence IGI] [PMID 12697820]; GO_process: GO:0006302 - double-strand break repair [Evidence IMP] [PMID 16024655]; GO_process: GO:0006337 - nucleosome disassembly [Evidence IDA] [PMID 16492771]; GO_process: GO:0033262 - regulation of nuclear cell cycle DNA replication [Evidence IGI] [PMID 17542652]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006368 - transcription elongation from RNA polymerase II promoter [Evidence IDA] [PMID 17081996]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Sfh1p 653895 SFH1 30033875 SFH1 Sugiyamaella lignohabitans Sfh1p XP_018734451.1 652819 D 796027 CDS AWJ20_202 30033886 655692..657173 A 1 NC_031672.1 Daughter cell-specific protein; may regulate cross-talk between the mating and filamentation pathways; deletion affects cell separation after division and sensitivity to alpha-factor and drugs affecting the cell wall; relocalizes from bud neck to cytoplasm upon DNA replication stress; GO_component: GO:0005935 - cellular bud neck [Evidence IEA]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 14562095]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0007109 - cytokinesis, completion of separation [Evidence IMP] [PMID 11309124]; GO_process: GO:0001403 - invasive growth in response to glucose limitation [Evidence IMP] [PMID 19820940]; GO_process: GO:0010969 - regulation of pheromone-dependent signal transduction involved in conjugation with cellular fusion [Evidence IMP] [PMID 19820940]; Dse1p 657173 DSE1 30033886 DSE1 Sugiyamaella lignohabitans Dse1p XP_018734452.1 655692 D 796027 CDS AWJ20_203 30033896 complement(657634..658689) A 1 NC_031672.1 Component of the Rpd3S histone deacetylase complex; Esa1p-associated factor, nonessential component of the NuA4 acetyltransferase complex, homologous to Drosophila dosage compensation protein MSL3; plays a role in regulating Ty1 transposition; GO_component: GO:0035267 - NuA4 histone acetyltransferase complex [Evidence IPI] [PMID 15485911]; GO_component: GO:0032221 - Rpd3S complex [Evidence IDA] [PMID 16286007]; GO_component: GO:0032221 - Rpd3S complex [Evidence IDA] [PMID 16286008]; GO_component: GO:0000123 - histone acetyltransferase complex [Evidence IDA] [PMID 11036083]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_function: GO:0004402 - histone acetyltransferase activity [Evidence IDA] [PMID 11036083]; GO_process: GO:0006281 - DNA repair [Evidence IEA]; GO_process: GO:0006281 - DNA repair [Evidence IDA] [PMID 16135807]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0016568 - chromatin modification [Evidence IEA]; GO_process: GO:0016573 - histone acetylation [Evidence IDA] [PMID 11036083]; GO_process: GO:0016575 - histone deacetylation [Evidence IMP] [PMID 16286007]; GO_process: GO:0060195 - negative regulation of antisense RNA transcription [Evidence IMP] [PMID 21248844]; GO_process: GO:0045892 - negative regulation of transcription, DNA-templated [Evidence IMP] [PMID 16364921]; GO_process: GO:0030174 - regulation of DNA-dependent DNA replication initiation [Evidence IMP] [PMID 19417103]; GO_process: GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 11036083]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006368 - transcription elongation from RNA polymerase II promoter [Evidence IGI] [PMID 19948887]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Eaf3p 658689 EAF3 30033896 EAF3 Sugiyamaella lignohabitans Eaf3p XP_018734453.1 657634 R 796027 CDS AWJ20_204 30033907 659107..660621 A 1 NC_031672.1 Kynurenine 3-mono oxygenase; required for the de novo biosynthesis of NAD from tryptophan via kynurenine; expression regulated by Hst1p; putative therapeutic target for Huntington disease; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0031966 - mitochondrial membrane [Evidence IEA]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IEA,IEA]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IDA] [PMID 16407407]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO_function: GO:0004502 - kynurenine 3-monooxygenase activity [Evidence IEA,IEA,IEA]; GO_function: GO:0004502 - kynurenine 3-monooxygenase activity [Evidence IMP] [PMID 15806102]; GO_function: GO:0004497 - monooxygenase activity [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_process: GO:0034354 - 'de novo' NAD biosynthetic process from tryptophan [Evidence IEA]; GO_process: GO:0034354 - 'de novo' NAD biosynthetic process from tryptophan [Evidence IGI] [PMID 12062417]; GO_process: GO:0009435 - NAD biosynthetic process [Evidence IEA]; GO_process: GO:0043420 - anthranilate metabolic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; GO_process: GO:0019363 - pyridine nucleotide biosynthetic process [Evidence IEA]; GO_process: GO:0019805 - quinolinate biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0006569 - tryptophan catabolic process [Evidence IEA,IEA]; kynurenine 3-monooxygenase 660621 BNA4 30033907 BNA4 Sugiyamaella lignohabitans kynurenine 3-monooxygenase XP_018734454.1 659107 D 796027 CDS AWJ20_205 30033918 complement(join(662932..664601,664919..665021)) A 1 NC_031672.1 Component of the Swr1p complex that incorporates Htz1p into chromatin; component of the NuA4 histone acetyltransferase complex; GO_component: GO:0035267 - NuA4 histone acetyltransferase complex [Evidence IEA]; GO_component: GO:0035267 - NuA4 histone acetyltransferase complex [Evidence IPI] [PMID 15353583]; GO_component: GO:0035267 - NuA4 histone acetyltransferase complex [Evidence IPI] [PMID 15485911]; GO_component: GO:0000812 - Swr1 complex [Evidence IDA] [PMID 14645854]; GO_component: GO:0000812 - Swr1 complex [Evidence IDA] [PMID 14690608]; GO_component: GO:0000123 - histone acetyltransferase complex [Evidence IPI] [PMID 12672825]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14690591]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0003677 - DNA binding [Evidence ISS] [PMID 14690591]; GO_function: GO:0003682 - chromatin binding [Evidence IEA]; GO_process: GO:0006281 - DNA repair [Evidence IEA,IEA]; GO_process: GO:0006281 - DNA repair [Evidence IDA] [PMID 16135807]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0016568 - chromatin modification [Evidence IEA]; GO_process: GO:0016568 - chromatin modification [Evidence IPI] [PMID 12672825]; GO_process: GO:0006338 - chromatin remodeling [Evidence IEA]; GO_process: GO:0006338 - chromatin remodeling [Evidence IDA] [PMID 14645854]; GO_process: GO:0006338 - chromatin remodeling [Evidence IPI] [PMID 14690608]; GO_process: GO:0051276 - chromosome organization [Evidence IMP] [PMID 18439903]; GO_process: GO:0043968 - histone H2A acetylation [Evidence IEA]; GO_process: GO:0043967 - histone H4 acetylation [Evidence IEA]; GO_process: GO:0016573 - histone acetylation [Evidence IPI] [PMID 14690591]; GO_process: GO:0043486 - histone exchange [Evidence IPI] [PMID 16299513]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Swc4p 665021 SWC4 30033918 SWC4 Sugiyamaella lignohabitans Swc4p XP_018734455.1 662932 R 796027 CDS AWJ20_206 30033929 665452..666810 A 1 NC_031672.1 Constituent of 66S pre-ribosomal particles; forms a complex with Nop7p and Erb1p that is required for maturation of the large ribosomal subunit; has seven C-terminal WD repeats; GO_component: GO:0070545 - PeBoW complex [Evidence IDA,IPI] [PMID 16287855]; GO_component: GO:0005730 - nucleolus [Evidence IEA,IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 11583614]; GO_component: GO:0005654 - nucleoplasm [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11914276]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IEA]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 11583614]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 17443350]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0043021 - ribonucleoprotein complex binding [Evidence IEA]; GO_process: GO:0051276 - chromosome organization [Evidence IGI] [PMID 10454593]; GO_process: GO:0000466 - maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IEA]; GO_process: GO:0000463 - maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IEA]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0042273 - ribosomal large subunit biogenesis [Evidence IEA]; GO_process: GO:0042273 - ribosomal large subunit biogenesis [Evidence IMP,IPI] [PMID 11583614]; GO_process: GO:0042273 - ribosomal large subunit biogenesis [Evidence IPI] [PMID 15100437]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA,IEA]; Ytm1p 666810 YTM1 30033929 YTM1 Sugiyamaella lignohabitans Ytm1p XP_018734456.1 665452 D 796027 CDS AWJ20_207 30033940 complement(join(667298..669304,670842..670910)) A 1 NC_031672.1 Glutamine-fructose-6-phosphate amidotransferase; catalyzes the formation of glucosamine-6-P and glutamate from fructose-6-P and glutamine in the first step of chitin biosynthesis; GFA1 has a paralogous region, comprising ORFs YMR084W-YMR085W, that arose from the whole genome duplication; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0030246 - carbohydrate binding [Evidence IEA]; GO_function: GO:0004360 - glutamine-fructose-6-phosphate transaminase (isomerizing) activity [Evidence IEA,IEA]; GO_function: GO:0004360 - glutamine-fructose-6-phosphate transaminase (isomerizing) activity [Evidence IDA] [PMID 2656689]; GO_function: GO:0008483 - transaminase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006048 - UDP-N-acetylglucosamine biosynthetic process [Evidence IEA]; GO_process: GO:0016051 - carbohydrate biosynthetic process [Evidence IEA]; GO_process: GO:0005975 - carbohydrate metabolic process [Evidence IEA]; GO_process: GO:0034221 - fungal-type cell wall chitin biosynthetic process [Evidence IGI] [PMID 11895440]; GO_process: GO:0006541 - glutamine metabolic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; glutamine--fructose-6-phosphate transaminase (isomerizing) GFA1 670910 GFA1 30033940 GFA1 Sugiyamaella lignohabitans glutamine--fructose-6-phosphate transaminase (isomerizing) GFA1 XP_018734457.1 667298 R 796027 CDS AWJ20_208 30033951 complement(674142..675548) A 1 NC_031672.1 hypothetical protein with 8 putative transmembrane segments; ORF exhibits genomic organization compatible with a translational readthrough-dependent mode of expression; GO_component: GO:0030137 - COPI-coated vesicle [Evidence IDA] [PMID 14562095]; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA,IEA]; GO_component: GO:0030136 - clathrin-coated vesicle [Evidence IDA] [PMID 14562095]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Bsc6p 675548 BSC6 30033951 BSC6 Sugiyamaella lignohabitans Bsc6p XP_018734458.1 674142 R 796027 CDS AWJ20_210 30033974 676544..677500 A 1 NC_031672.1 AdoMet-dependent tRNA methyltransferase and actin binding protein; C-terminal domain is responsible for 3-methylcytidine modification of residue 32 of the tRNA anticodon loop of tRNA-Thr and tRNA-Ser and contains an S-adenosylmethionine (AdoMet) binding motif; N-terminal actin binding sequence interacts with actin filaments and localizes to actin patches and cables; N- and C-terminal domains are encoded in separate ORFs that are translated into one protein via a +1 frameshift; GO_component: GO:0030479 - actin cortical patch [Evidence IDA] [PMID 9467951]; GO_component: GO:0005884 - actin filament [Evidence IDA] [PMID 9467951]; GO_component: GO:0032432 - actin filament bundle [Evidence IDA] [PMID 11805329]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA,IEA]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 19053807]; GO_function: GO:0003779 - actin binding [Evidence IEA]; GO_function: GO:0051015 - actin filament binding [Evidence IDA] [PMID 9467951]; GO_function: GO:0008168 - methyltransferase activity [Evidence IEA]; GO_function: GO:0030674 - protein binding, bridging [Evidence IDA] [PMID 9467951]; GO_function: GO:0052735 - tRNA (cytosine-3-)-methyltransferase activity [Evidence IDA,IMP] [PMID 21518804]; GO_function: GO:0052735 - tRNA (cytosine-3-)-methyltransferase activity [Evidence IDA] [PMID 21518805]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0051017 - actin filament bundle assembly [Evidence IDA] [PMID 9467951]; GO_process: GO:0032259 - methylation [Evidence IEA]; GO_process: GO:0030488 - tRNA methylation [Evidence IMP] [PMID 21518804]; GO_process: GO:0030488 - tRNA methylation [Evidence IMP] [PMID 21518805]; Abp140p 677500 ABP140 30033974 ABP140 Sugiyamaella lignohabitans Abp140p XP_018734459.1 676544 D 796027 CDS AWJ20_211 30033985 complement(677531..678349) A 1 NC_031672.1 Protein proposed to be involved in vacuolar functions; mutant shows defect in CPY processing and defects in vacuolar morphology; has similarity to oxidoreductases, found in lipid particles; required for replication of Brome mosaic virus in S. cerevisiae, a model system for studying replication of positive-strand RNA viruses in their natural hosts; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0005811 - lipid particle [Evidence IEA,IEA]; GO_component: GO:0005811 - lipid particle [Evidence IDA] [PMID 14562095]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence ISS] [PMID 8972580]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; GO_process: GO:0006624 - vacuolar protein processing [Evidence IMP] [PMID 21912603]; GO_process: GO:0007033 - vacuole organization [Evidence IMP] [PMID 21912603]; Env9p 678349 ENV9 30033985 ENV9 Sugiyamaella lignohabitans Env9p XP_018734460.1 677531 R 796027 CDS AWJ20_212 30033996 complement(join(680825..681416,681564..682444)) A 1 NC_031672.1 Kinesin-like protein 682444 30033996 AWJ20_212 Sugiyamaella lignohabitans Kinesin-like protein XP_018734461.1 680825 R 796027 CDS AWJ20_213 30034007 complement(683097..684227) A 1 NC_031672.1 Glyoxylate reductase; acts on glyoxylate and hydroxypyruvate substrates; YPL113C is not an essential gene; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0048037 - cofactor binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor [Evidence IEA]; GO_function: GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor [Evidence IMP] [PMID 17173333]; GO_process: GO:0008152 - metabolic process [Evidence IMP] [PMID 17173333]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; glyoxylate reductase 684227 30034007 AWJ20_213 Sugiyamaella lignohabitans glyoxylate reductase XP_018734462.1 683097 R 796027 CDS AWJ20_214 30034018 complement(684631..685875) A 1 NC_031672.1 uncharacterized protein 685875 30034018 AWJ20_214 Sugiyamaella lignohabitans uncharacterized protein XP_018734463.1 684631 R 796027 CDS AWJ20_215 30034029 complement(688654..689403) A 1 NC_031672.1 top hit is XP_002839470.1 originated in Tuber melanosporum Mel28; conserved fungal protein; uncharacterized protein 689403 tam14 30034029 tam14 Sugiyamaella lignohabitans uncharacterized protein XP_018734464.1 688654 R 796027 CDS AWJ20_216 30034040 689818..691890 A 1 NC_031672.1 Subunit of a nuclear complex with Noc2p and pre-replicative complexes; the Noc2p-Noc3p complex binds to 66S ribosomal precursors to mediate their maturation and intranuclear transport; binds to chromatin at active replication origins, and is required for pre-RC formation and maintenance during DNA replication licensing; GO_component: GO:0030691 - Noc2p-Noc3p complex [Evidence IPI] [PMID 11371346]; GO_component: GO:0005656 - nuclear pre-replicative complex [Evidence IDA] [PMID 22421151]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 11371346]; GO_component: GO:0005654 - nucleoplasm [Evidence IDA] [PMID 11371346]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 12110182]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 23212245]; GO_function: GO:0003682 - chromatin binding [Evidence IDA] [PMID 12110182]; GO_process: GO:0006260 - DNA replication [Evidence IEA]; GO_process: GO:0006270 - DNA replication initiation [Evidence IDA] [PMID 12110182]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0006267 - pre-replicative complex assembly involved in nuclear cell cycle DNA replication [Evidence IMP] [PMID 22421151]; GO_process: GO:0006364 - rRNA processing [Evidence IDA] [PMID 12110182]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; Noc3p 691890 NOC3 30034040 NOC3 Sugiyamaella lignohabitans Noc3p XP_018734465.1 689818 D 796027 CDS AWJ20_217 30034051 695480..696115 A 1 NC_031672.1 uncharacterized protein 696115 30034051 AWJ20_217 Sugiyamaella lignohabitans uncharacterized protein XP_018734466.1 695480 D 796027 CDS AWJ20_218 30034062 696333..697175 A 1 NC_031672.1 uncharacterized protein 697175 30034062 AWJ20_218 Sugiyamaella lignohabitans uncharacterized protein XP_018734467.1 696333 D 796027 CDS AWJ20_219 30034073 697550..699979 A 1 NC_031672.1 uncharacterized protein 699979 30034073 AWJ20_219 Sugiyamaella lignohabitans uncharacterized protein XP_018734468.1 697550 D 796027 CDS AWJ20_220 30034085 706765..707160 A 1 NC_031672.1 DNA-binding protein C1D 707160 30034085 AWJ20_220 Sugiyamaella lignohabitans DNA-binding protein C1D XP_018734469.1 706765 D 796027 CDS AWJ20_221 30034096 708488..709039 A 1 NC_031672.1 uncharacterized protein 709039 30034096 AWJ20_221 Sugiyamaella lignohabitans uncharacterized protein XP_018734470.1 708488 D 796027 CDS AWJ20_222 30034107 complement(710428..711885) A 1 NC_031672.1 Peroxisomal membrane protein (PMP); required for proper localization and stability of PMPs; anchors peroxisome retention factor Inp1p at the peroxisomal membrane; interacts with Pex19p; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 16009135]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0005779 - integral component of peroxisomal membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005778 - peroxisomal membrane [Evidence IEA]; GO_component: GO:0005778 - peroxisomal membrane [Evidence IDA] [PMID 1894692]; GO_component: GO:0005777 - peroxisome [Evidence IEA]; GO_component: GO:0005777 - peroxisome [Evidence IDA] [PMID 23900285]; GO_function: GO:0005515 - protein binding [Evidence IPI] [PMID 9418908]; GO_function: GO:0030674 - protein binding, bridging [Evidence IMP] [PMID 23900285]; GO_process: GO:0032581 - ER-dependent peroxisome organization [Evidence IDA] [PMID 17646399]; GO_process: GO:0032581 - ER-dependent peroxisome organization [Evidence IMP] [PMID 20427571]; GO_process: GO:0045033 - peroxisome inheritance [Evidence IMP] [PMID 19948495]; GO_process: GO:0007031 - peroxisome organization [Evidence IEA]; GO_process: GO:0045046 - protein import into peroxisome membrane [Evidence IMP] [PMID 10637226]; Pex3p 711885 PEX3 30034107 PEX3 Sugiyamaella lignohabitans Pex3p XP_018734471.1 710428 R 796027 CDS AWJ20_223 30034118 713600..714892 A 1 NC_031672.1 uncharacterized protein 714892 30034118 AWJ20_223 Sugiyamaella lignohabitans uncharacterized protein XP_018734472.1 713600 D 796027 CDS AWJ20_224 30034129 complement(715148..715918) A 1 NC_031672.1 8-oxo-dGTP diphosphatase; prevents spontaneous mutagenesis via sanitization of oxidized purine nucleoside triphosphates; can also act as peroxisomal pyrophosphatase with specificity for coenzyme A and CoA derivatives, may function to remove potentially toxic oxidized CoA disulfide from peroxisomes to maintain the capacity for beta-oxidation of fatty acids; nudix hydrolase family member; similar E. coli MutT and human, rat and mouse MTH1; GO_component: GO:0005777 - peroxisome [Evidence IEA,IEA]; GO_component: GO:0005777 - peroxisome [Evidence IDA] [PMID 10922370]; GO_function: GO:0008413 - 8-oxo-7,8-dihydroguanosine triphosphate pyrophosphatase activity [Evidence IDA,IMP] [PMID 15475388]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA,IEA]; GO_function: GO:0016818 - hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides [Evidence IEA]; GO_function: GO:0000287 - magnesium ion binding [Evidence IEA]; GO_function: GO:0030145 - manganese ion binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016462 - pyrophosphatase activity [Evidence IDA] [PMID 10922370]; GO_process: GO:0006281 - DNA repair [Evidence IMP] [PMID 15475388]; GO_process: GO:0009132 - nucleoside diphosphate metabolic process [Evidence IEA]; Pcd1p 715918 PCD1 30034129 PCD1 Sugiyamaella lignohabitans Pcd1p XP_018734473.1 715148 R 796027 CDS AWJ20_225 30034140 complement(716670..719402) A 1 NC_031672.1 uncharacterized protein 719402 30034140 AWJ20_225 Sugiyamaella lignohabitans uncharacterized protein XP_018734474.1 716670 R 796027 CDS AWJ20_226 30034151 726023..728335 A 1 NC_031672.1 serine/threonine protein kinase SAT4 728335 SAT4 30034151 SAT4 Sugiyamaella lignohabitans serine/threonine protein kinase SAT4 XP_018734475.1 726023 D 796027 CDS AWJ20_227 30034162 733058..733846 A 1 NC_031672.1 Amphiphysin-like lipid raft protein; interacts with Rvs167p and regulates polarization of the actin cytoskeleton, endocytosis, cell polarity, cell fusion and viability following starvation or osmotic stress; GO_component: GO:0030479 - actin cortical patch [Evidence IDA] [PMID 16239147]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA,IEA]; GO_component: GO:0005937 - mating projection [Evidence IDA] [PMID 9566960]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 19053807]; GO_component: GO:0045121 - membrane raft [Evidence IDA] [PMID 12477802]; GO_function: GO:0008092 - cytoskeletal protein binding [Evidence IPI,ISS] [PMID 10388809]; GO_function: GO:0008289 - lipid binding [Evidence IDA] [PMID 20610658]; GO_process: GO:0051666 - actin cortical patch localization [Evidence IMP] [PMID 8590801]; GO_process: GO:0030036 - actin cytoskeleton organization [Evidence IMP] [PMID 7891662]; GO_process: GO:0031532 - actin cytoskeleton reorganization [Evidence IMP] [PMID 7891662]; GO_process: GO:0000747 - conjugation with cellular fusion [Evidence IMP] [PMID 11096097]; GO_process: GO:0006897 - endocytosis [Evidence IMP] [PMID 8590801]; GO_process: GO:0060988 - lipid tube assembly [Evidence IDA] [PMID 20610658]; GO_process: GO:0006970 - response to osmotic stress [Evidence IMP] [PMID 1776363]; GO_process: GO:0042594 - response to starvation [Evidence IMP] [PMID 1776363]; amphiphysin-like protein RVS161 733846 RVS161 30034162 RVS161 Sugiyamaella lignohabitans amphiphysin-like protein RVS161 XP_018734476.1 733058 D 796027 CDS AWJ20_228 30034173 complement(735245..735589) A 1 NC_031672.1 uncharacterized protein 735589 30034173 AWJ20_228 Sugiyamaella lignohabitans uncharacterized protein XP_018734477.1 735245 R 796027 CDS AWJ20_229 30034184 complement(738444..740516) A 1 NC_031672.1 uncharacterized protein 740516 30034184 AWJ20_229 Sugiyamaella lignohabitans uncharacterized protein XP_018734478.1 738444 R 796027 CDS AWJ20_231 30034207 complement(741283..742779) A 1 NC_031672.1 Transcriptional activator involved in regulating lysine biosynthesis; involved in the regulation of genes of the lysine biosynthesis pathway; requires 2-aminoadipate semialdehyde as co-inducer; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 10975256]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0000978 - RNA polymerase II core promoter proximal region sequence-specific DNA binding [Evidence IDA] [PMID 9701810]; GO_function: GO:0001077 - RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription [Evidence ISA] [PMID 7935367]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19111667]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19158363]; GO_function: GO:0000981 - sequence-specific DNA binding RNA polymerase II transcription factor activity [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0009085 - lysine biosynthetic process [Evidence IEA]; GO_process: GO:2001196 - positive regulation of lysine biosynthetic process via alpha-aminoadipate and saccharopine [Evidence IMP] [PMID 3123231]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IDA] [PMID 11952910]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 3123231]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IDA] [PMID 7935367]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA,IEA]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Lys14p 742779 LYS14 30034207 LYS14 Sugiyamaella lignohabitans Lys14p XP_018734479.1 741283 R 796027 CDS AWJ20_234 30034240 745451..748096 A 1 NC_031672.1 Conserved protein involved in exocytic transport from the Golgi; mutation is synthetically lethal with apl2 vps1 double mutation; member of a protein superfamily with orthologs in diverse organisms; relocalizes from bud neck to cytoplasm upon DNA replication stress; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 22842922]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006892 - post-Golgi vesicle-mediated transport [Evidence IMP] [PMID 17229886]; Avl9p 748096 AVL9 30034240 AVL9 Sugiyamaella lignohabitans Avl9p XP_018734480.1 745451 D 796027 CDS AWJ20_235 30034251 748317..749018 A 1 NC_031672.1 Conserved protein involved in exocytic transport from the Golgi; mutation is synthetically lethal with apl2 vps1 double mutation; member of a protein superfamily with orthologs in diverse organisms; relocalizes from bud neck to cytoplasm upon DNA replication stress; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 22842922]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006892 - post-Golgi vesicle-mediated transport [Evidence IMP] [PMID 17229886]; Avl9p 749018 AVL9 30034251 AVL9 Sugiyamaella lignohabitans Avl9p XP_018734481.1 748317 D 796027 CDS AWJ20_236 30034262 complement(749142..751544) A 1 NC_031672.1 Subunit of a Golgi membrane exchange factor (Ric1p-Rgp1p); this complex catalyzes nucleotide exchange on Ypt6p; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA,IEA]; GO_component: GO:0005794 - Golgi apparatus [Evidence IDA] [PMID 10990452]; GO_component: GO:0000139 - Golgi membrane [Evidence IPI] [PMID 10990452]; GO_component: GO:0034066 - RIC1-RGP1 guanyl-nucleotide exchange factor complex [Evidence IPI] [PMID 10990452]; GO_component: GO:0032045 - guanyl-nucleotide exchange factor complex [Evidence IDA] [PMID 10990452]; GO_function: GO:0005085 - guanyl-nucleotide exchange factor activity [Evidence IEA]; GO_function: GO:0005085 - guanyl-nucleotide exchange factor activity [Evidence IDA,IPI] [PMID 10990452]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0007067 - mitotic nuclear division [Evidence IEA]; GO_process: GO:0043087 - regulation of GTPase activity [Evidence IEA]; GO_process: GO:0042147 - retrograde transport, endosome to Golgi [Evidence IPI] [PMID 10990452]; GO_process: GO:0042147 - retrograde transport, endosome to Golgi [Evidence IMP] [PMID 11082047]; Rgp1p 751544 RGP1 30034262 RGP1 Sugiyamaella lignohabitans Rgp1p XP_018734482.1 749142 R 796027 CDS AWJ20_237 30034273 complement(752076..753038) A 1 NC_031672.1 Exosome non-catalytic core component; involved in 3'-5' RNA processing and degradation in both the nucleus and the cytoplasm; has similarity to E. coli RNase PH and to human hRrp45p (PM/SCL-75, EXOSC9); protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0000177 - cytoplasmic exosome (RNase complex) [Evidence IDA] [PMID 10465791]; GO_component: GO:0000177 - cytoplasmic exosome (RNase complex) [Evidence IDA] [PMID 19046973]; GO_component: GO:0000178 - exosome (RNase complex) [Evidence IEA]; GO_component: GO:0000176 - nuclear exosome (RNase complex) [Evidence IDA] [PMID 10465791]; GO_component: GO:0000176 - nuclear exosome (RNase complex) [Evidence IDA] [PMID 19046973]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 16541108]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0034473 - U1 snRNA 3'-end processing [Evidence IGI,IMP] [PMID 10508172]; GO_process: GO:0034475 - U4 snRNA 3'-end processing [Evidence IGI,IMP] [PMID 10508172]; GO_process: GO:0034476 - U5 snRNA 3'-end processing [Evidence IGI,IMP] [PMID 10508172]; GO_process: GO:0000467 - exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 10465791]; GO_process: GO:0000467 - exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 10508172]; GO_process: GO:0070651 - nonfunctional rRNA decay [Evidence IC] [PMID 10465791]; GO_process: GO:0071042 - nuclear polyadenylation-dependent mRNA catabolic process [Evidence IC] [PMID 10465791]; GO_process: GO:0071035 - nuclear polyadenylation-dependent rRNA catabolic process [Evidence IMP] [PMID 10465791]; GO_process: GO:0071038 - nuclear polyadenylation-dependent tRNA catabolic process [Evidence IDA] [PMID 15828860]; GO_process: GO:0071038 - nuclear polyadenylation-dependent tRNA catabolic process [Evidence IDA] [PMID 17643380]; GO_process: GO:0070478 - nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay [Evidence IC] [PMID 10465791]; GO_process: GO:0034427 - nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5' [Evidence IC] [PMID 10465791]; GO_process: GO:0070481 - nuclear-transcribed mRNA catabolic process, non-stop decay [Evidence IC] [PMID 10465791]; GO_process: GO:0071051 - polyadenylation-dependent snoRNA 3'-end processing [Evidence IC] [PMID 10465791]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; exosome non-catalytic core subunit RRP45 753038 RRP45 30034273 RRP45 Sugiyamaella lignohabitans exosome non-catalytic core subunit RRP45 XP_018734483.1 752076 R 796027 CDS AWJ20_238 30034284 complement(753396..755045) A 1 NC_031672.1 Polyamine transporter of the major facilitator superfamily; member of the 12-spanner drug:H(+) antiporter DHA1 family; recognizes spermine, putrescine, and spermidine; catalyzes uptake of polyamines at alkaline pH and excretion at acidic pH; during oxidative stress exports spermine, spermidine from the cell, which controls timing of expression of stress-responsive genes; phosphorylation enhances activity and sorting to the plasma membrane; GO_component: GO:0033101 - cellular bud membrane [Evidence IDA] [PMID 13679573]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IMP] [PMID 11171066]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 12562762]; GO_component: GO:0005886 - plasma membrane [Evidence IDA,IMP] [PMID 15637075]; GO_function: GO:0015297 - antiporter activity [Evidence IEA]; GO_function: GO:0015606 - spermidine transmembrane transporter activity [Evidence IMP] [PMID 11171066]; GO_function: GO:0015606 - spermidine transmembrane transporter activity [Evidence IDA,IMP] [PMID 15637075]; GO_function: GO:0000297 - spermine transmembrane transporter activity [Evidence IMP] [PMID 11171066]; GO_function: GO:0000297 - spermine transmembrane transporter activity [Evidence IDA,IMP] [PMID 15637075]; GO_function: GO:0000297 - spermine transmembrane transporter activity [Evidence IMP] [PMID 9920864]; GO_process: GO:1902047 - polyamine transmembrane transport [Evidence IMP] [PMID 24136413]; GO_process: GO:0015847 - putrescine transport [Evidence IMP] [PMID 9920864]; GO_process: GO:0015848 - spermidine transport [Evidence IMP] [PMID 11171066]; GO_process: GO:0015848 - spermidine transport [Evidence IDA,IMP] [PMID 15637075]; GO_process: GO:0015848 - spermidine transport [Evidence IMP] [PMID 9920864]; GO_process: GO:0000296 - spermine transport [Evidence IMP] [PMID 11171066]; GO_process: GO:0000296 - spermine transport [Evidence IDA,IMP] [PMID 15637075]; GO_process: GO:0000296 - spermine transport [Evidence IMP] [PMID 9920864]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Tpo1p 755045 TPO1 30034284 TPO1 Sugiyamaella lignohabitans Tpo1p XP_018734484.1 753396 R 796027 CDS AWJ20_239 30034295 759571..760761 A 1 NC_031672.1 Acetyl-CoA C-acetyltransferase (acetoacetyl-CoA thiolase); cytosolic enzyme that transfers an acetyl group from one acetyl-CoA molecule to another, forming acetoacetyl-CoA; involved in the first step in mevalonate biosynthesis; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 5571830]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003985 - acetyl-CoA C-acetyltransferase activity [Evidence IEA]; GO_function: GO:0003985 - acetyl-CoA C-acetyltransferase activity [Evidence IDA] [PMID 7989303]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016746 - transferase activity, transferring acyl groups [Evidence IEA]; GO_function: GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups [Evidence IEA]; GO_process: GO:0006696 - ergosterol biosynthetic process [Evidence IMP] [PMID 200835]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; acetyl-CoA C-acetyltransferase 760761 ERG10 30034295 ERG10 Sugiyamaella lignohabitans acetyl-CoA C-acetyltransferase XP_018734485.1 759571 D 796027 CDS AWJ20_240 30034307 complement(760146..760397) A 1 NC_031672.1 uncharacterized protein 760397 30034307 AWJ20_240 Sugiyamaella lignohabitans uncharacterized protein XP_018734486.1 760146 R 796027 CDS AWJ20_241 30034318 complement(761087..761872) A 1 NC_031672.1 Non-ATPase base subunit of the 19S RP of the 26S proteasome; N-terminus plays a role in maintaining the structural integrity of the regulatory particle (RP); binds selectively to polyubiquitin chains; homolog of the mammalian S5a protein; GO_component: GO:0000502 - proteasome complex [Evidence IEA]; GO_component: GO:0000502 - proteasome complex [Evidence IMP] [PMID 15242647]; GO_component: GO:0008540 - proteasome regulatory particle, base subcomplex [Evidence IEA]; GO_component: GO:0008540 - proteasome regulatory particle, base subcomplex [Evidence IPI] [PMID 15907469]; GO_component: GO:0008540 - proteasome regulatory particle, base subcomplex [Evidence IDA] [PMID 9741626]; GO_function: GO:0031593 - polyubiquitin binding [Evidence IDA] [PMID 8887631]; GO_function: GO:0005198 - structural molecule activity [Evidence IMP] [PMID 9741626]; GO_process: GO:0006511 - ubiquitin-dependent protein catabolic process [Evidence IEA]; GO_process: GO:0006511 - ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 15242647]; proteasome regulatory particle base subunit RPN10 761872 RPN10 30034318 RPN10 Sugiyamaella lignohabitans proteasome regulatory particle base subunit RPN10 XP_018734487.1 761087 R 796027 CDS AWJ20_242 30034329 complement(764320..764739) A 1 NC_031672.1 Mitochondrial ribosomal protein of the large subunit; localizes to vacuole in response to H2O2; GO_component: GO:0000324 - fungal-type vacuole [Evidence IDA] [PMID 23509072]; GO_component: GO:0005762 - mitochondrial large ribosomal subunit [Evidence IPI] [PMID 12392552]; GO_component: GO:0005762 - mitochondrial large ribosomal subunit [Evidence IDA] [PMID 9151978]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA,IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IPI] [PMID 12392552]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IDA] [PMID 9151978]; GO_process: GO:0032543 - mitochondrial translation [Evidence IC] [PMID 12392552]; GO_process: GO:0032543 - mitochondrial translation [Evidence IC] [PMID 9151978]; GO_process: GO:0006412 - translation [Evidence IEA]; mitochondrial 54S ribosomal protein YmL23 764739 MRPL23 30034329 MRPL23 Sugiyamaella lignohabitans mitochondrial 54S ribosomal protein YmL23 XP_018734488.1 764320 R 796027 CDS AWJ20_243 30034340 complement(join(765304..769658,769725..769746)) A 1 NC_031672.1 Sulfite reductase beta subunit; involved in amino acid biosynthesis, transcription repressed by methionine; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0009337 - sulfite reductase complex (NADPH) [Evidence IDA] [PMID 6751400]; GO_component: GO:0009337 - sulfite reductase complex (NADPH) [Evidence IDA] [PMID 9003798]; GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO_function: GO:0010181 - FMN binding [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0020037 - heme binding [Evidence IEA]; GO_function: GO:0005506 - iron ion binding [Evidence IEA]; GO_function: GO:0051536 - iron-sulfur cluster binding [Evidence IEA,IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0004783 - sulfite reductase (NADPH) activity [Evidence IEA]; GO_function: GO:0004783 - sulfite reductase (NADPH) activity [Evidence IDA] [PMID 6751400]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0019344 - cysteine biosynthetic process [Evidence IEA]; GO_process: GO:0070814 - hydrogen sulfide biosynthetic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0009086 - methionine biosynthetic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0000103 - sulfate assimilation [Evidence IMP] [PMID 19236486]; GO_process: GO:0000097 - sulfur amino acid biosynthetic process [Evidence IMP] [PMID 1479340]; sulfite reductase (NADPH) subunit beta 769746 MET5 30034340 MET5 Sugiyamaella lignohabitans sulfite reductase (NADPH) subunit beta XP_018734489.1 765304 R 796027 CDS AWJ20_244 30034351 771439..772680 A 1 NC_031672.1 uncharacterized protein 772680 30034351 AWJ20_244 Sugiyamaella lignohabitans uncharacterized protein XP_018734490.1 771439 D 796027 CDS AWJ20_245 30034362 773653..775821 A 1 NC_031672.1 Neurospora crassa e-Compendium ncu01765.3; NADH:ubiquinone oxidoreductase 78kD subunit 775821 30034362 AWJ20_245 Sugiyamaella lignohabitans NADH:ubiquinone oxidoreductase 78kD subunit XP_018734491.1 773653 D 796027 CDS AWJ20_246 30034373 778393..779268 A 1 NC_031672.1 Peroxisomal 2,4-dienoyl-CoA reductase; auxiliary enzyme of fatty acid beta-oxidation; homodimeric enzyme required for growth and sporulation on petroselineate medium; expression induced during late sporulation and in the presence of oleate; GO_component: GO:0005782 - peroxisomal matrix [Evidence IDA] [PMID 9268358]; GO_component: GO:0005777 - peroxisome [Evidence IEA,IEA]; GO_function: GO:0008670 - 2,4-dienoyl-CoA reductase (NADPH) activity [Evidence IEA]; GO_function: GO:0008670 - 2,4-dienoyl-CoA reductase (NADPH) activity [Evidence IDA,ISS] [PMID 9268358]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_process: GO:0030437 - ascospore formation [Evidence IEP,IMP] [PMID 7969036]; GO_process: GO:0009062 - fatty acid catabolic process [Evidence IDA,ISS] [PMID 9268358]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; GO_process: GO:0030435 - sporulation resulting in formation of a cellular spore [Evidence IEA]; Sps19p 779268 SPS19 30034373 SPS19 Sugiyamaella lignohabitans Sps19p XP_018734492.1 778393 D 796027 CDS AWJ20_248 30034395 779945..780619 A 1 NC_031672.1 Fatty-acyl coenzyme A oxidase; involved in the fatty acid beta-oxidation pathway; localized to the peroxisomal matrix; GO_component: GO:0005782 - peroxisomal matrix [Evidence IDA] [PMID 11967269]; GO_component: GO:0005777 - peroxisome [Evidence IEA,IEA,IEA]; GO_function: GO:0003995 - acyl-CoA dehydrogenase activity [Evidence IEA]; GO_function: GO:0003997 - acyl-CoA oxidase activity [Evidence IEA,IEA]; GO_function: GO:0003997 - acyl-CoA oxidase activity [Evidence ISA] [PMID 2189786]; GO_function: GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0016627 - oxidoreductase activity, acting on the CH-CH group of donors [Evidence IEA]; GO_process: GO:0006635 - fatty acid beta-oxidation [Evidence IEA]; GO_process: GO:0006635 - fatty acid beta-oxidation [Evidence IMP] [PMID 12819196]; GO_process: GO:0033540 - fatty acid beta-oxidation using acyl-CoA oxidase [Evidence IEA]; GO_process: GO:0033540 - fatty acid beta-oxidation using acyl-CoA oxidase [Evidence ISA] [PMID 2189786]; GO_process: GO:0006631 - fatty acid metabolic process [Evidence IEA,IEA]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; acyl-CoA oxidase 780619 POX1 30034395 POX1 Sugiyamaella lignohabitans acyl-CoA oxidase XP_018734493.1 779945 D 796027 CDS AWJ20_249 30034406 780800..782134 A 1 NC_031672.1 Fatty-acyl coenzyme A oxidase; involved in the fatty acid beta-oxidation pathway; localized to the peroxisomal matrix; GO_component: GO:0005782 - peroxisomal matrix [Evidence IDA] [PMID 11967269]; GO_component: GO:0005777 - peroxisome [Evidence IEA,IEA,IEA]; GO_function: GO:0003995 - acyl-CoA dehydrogenase activity [Evidence IEA]; GO_function: GO:0003997 - acyl-CoA oxidase activity [Evidence IEA,IEA]; GO_function: GO:0003997 - acyl-CoA oxidase activity [Evidence ISA] [PMID 2189786]; GO_function: GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0016627 - oxidoreductase activity, acting on the CH-CH group of donors [Evidence IEA]; GO_process: GO:0006635 - fatty acid beta-oxidation [Evidence IEA]; GO_process: GO:0006635 - fatty acid beta-oxidation [Evidence IMP] [PMID 12819196]; GO_process: GO:0033540 - fatty acid beta-oxidation using acyl-CoA oxidase [Evidence IEA]; GO_process: GO:0033540 - fatty acid beta-oxidation using acyl-CoA oxidase [Evidence ISA] [PMID 2189786]; GO_process: GO:0006631 - fatty acid metabolic process [Evidence IEA,IEA]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; acyl-CoA oxidase 782134 POX1 30034406 POX1 Sugiyamaella lignohabitans acyl-CoA oxidase XP_018734494.1 780800 D 796027 CDS AWJ20_250 30034418 782876..783643 A 1 NC_031672.1 uncharacterized protein 783643 30034418 AWJ20_250 Sugiyamaella lignohabitans uncharacterized protein XP_018734495.1 782876 D 796027 CDS AWJ20_251 30034429 complement(783732..784652) A 1 NC_031672.1 Putative transporter in the major facilitator superfamily; member of the 12-spanner drug:H(+) antiporter DHA1 family; mutations in membrane-spanning domains permit cation and histidinol uptake; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005886 - plasma membrane [Evidence ISS] [PMID 8955402]; GO_function: GO:0015665 - alcohol transmembrane transporter activity [Evidence IMP] [PMID 2405251]; GO_function: GO:0022890 - inorganic cation transmembrane transporter activity [Evidence IMP] [PMID 8955402]; GO_process: GO:0006812 - cation transport [Evidence IMP] [PMID 8955402]; GO_process: GO:0015850 - organic hydroxy compound transport [Evidence IMP] [PMID 2405251]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Hol1p 784652 HOL1 30034429 HOL1 Sugiyamaella lignohabitans Hol1p XP_018734496.1 783732 R 796027 CDS AWJ20_252 30034440 complement(785009..785449) A 1 NC_031672.1 uncharacterized protein 785449 30034440 AWJ20_252 Sugiyamaella lignohabitans uncharacterized protein XP_018734497.1 785009 R 796027 CDS AWJ20_253 30034451 786833..787966 A 1 NC_031672.1 Beta subunit of geranylgeranyltransferase type I; catalyzes geranylgeranylation to the cysteine residue in proteins containing a C-terminal CaaX sequence ending in Leu or Phe; has substrates important for morphogenesis; GO_component: GO:0005953 - CAAX-protein geranylgeranyltransferase complex [Evidence IDA] [PMID 1400380]; GO_component: GO:0005622 - intracellular [Evidence TAS] [PMID 9891811]; GO_function: GO:0004662 - CAAX-protein geranylgeranyltransferase activity [Evidence IEA]; GO_function: GO:0004662 - CAAX-protein geranylgeranyltransferase activity [Evidence IDA] [PMID 1400380]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004659 - prenyltransferase activity [Evidence IEA]; GO_function: GO:0004661 - protein geranylgeranyltransferase activity [Evidence IDA] [PMID 10066831]; GO_function: GO:0004661 - protein geranylgeranyltransferase activity [Evidence IDA] [PMID 2034682]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006874 - cellular calcium ion homeostasis [Evidence TAS] [PMID 9891811]; GO_process: GO:0030010 - establishment of cell polarity [Evidence TAS] [PMID 9891811]; GO_process: GO:0018344 - protein geranylgeranylation [Evidence IDA] [PMID 2034682]; GO_process: GO:0007264 - small GTPase mediated signal transduction [Evidence TAS] [PMID 9891811]; protein geranylgeranyltransferase type I subunit CDC43 787966 CDC43 30034451 CDC43 Sugiyamaella lignohabitans protein geranylgeranyltransferase type I subunit CDC43 XP_018734498.1 786833 D 796027 CDS AWJ20_255 30034473 790117..791385 A 1 NC_031672.1 Nuclear dsRNA-specific ribonuclease (RNase III); involved in rDNA transcription, rRNA processing and U2 snRNA 3' end formation by cleavage of a stem-loop structure at the 3' end of U2 snRNA; involved in polyadenylation-independent transcription termination; involved in the cell wall stress response, regulating the degradation of cell wall integrity and morphogenesis checkpoint genes; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 15090619]; GO_component: GO:0005654 - nucleoplasm [Evidence IDA] [PMID 15090619]; GO_function: GO:0003723 - RNA binding [Evidence IEA,IEA]; GO_function: GO:0004519 - endonuclease activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0004518 - nuclease activity [Evidence IEA]; GO_function: GO:0004525 - ribonuclease III activity [Evidence IEA,IEA]; GO_function: GO:0004525 - ribonuclease III activity [Evidence IDA] [PMID 15766245]; GO_process: GO:0090501 - RNA phosphodiester bond hydrolysis [Evidence IEA,IEA]; GO_process: GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic [Evidence IEA,IEA]; GO_process: GO:0006396 - RNA processing [Evidence IEA]; GO_process: GO:0034473 - U1 snRNA 3'-end processing [Evidence IMP] [PMID 10508172]; GO_process: GO:0034475 - U4 snRNA 3'-end processing [Evidence IMP] [PMID 10508172]; GO_process: GO:0034476 - U5 snRNA 3'-end processing [Evidence IMP] [PMID 10508172]; GO_process: GO:0034963 - box C/D snoRNA processing [Evidence IMP] [PMID 23201338]; GO_process: GO:0034964 - box H/ACA snoRNA processing [Evidence IMP] [PMID 23201338]; GO_process: GO:0006325 - chromatin organization [Evidence IMP] [PMID 17991894]; GO_process: GO:0006379 - mRNA cleavage [Evidence IDA,IMP] [PMID 17158880]; GO_process: GO:0016075 - rRNA catabolic process [Evidence IEA]; GO_process: GO:0006364 - rRNA processing [Evidence IMP] [PMID 17991894]; GO_process: GO:0009303 - rRNA transcription [Evidence IMP] [PMID 17991894]; GO_process: GO:0060237 - regulation of fungal-type cell wall organization [Evidence IGI,IMP] [PMID 22576366]; GO_process: GO:0030847 - termination of RNA polymerase II transcription, exosome-dependent [Evidence IDA,IMP,IPI] [PMID 19818713]; Rnt1p 791385 RNT1 30034473 RNT1 Sugiyamaella lignohabitans Rnt1p XP_018734499.1 790117 D 796027 CDS AWJ20_256 30034484 791751..792131 A 1 NC_031672.1 Component of the INO80 chromatin remodeling complex; critical for INO80 function; involved in regulation of chromosome segregation and maintenance of normal centromeric chromatin structure; human ortholog INO80C is a member of the human INO80 complex; implicated in DNA repair based on genetic interactions with RAD52 epistasis genes; GO_component: GO:0031011 - Ino80 complex [Evidence IPI] [PMID 24034245]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006338 - chromatin remodeling [Evidence IMP] [PMID 23207916]; GO_process: GO:0051983 - regulation of chromosome segregation [Evidence IMP] [PMID 23207916]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Ies6p 792131 IES6 30034484 IES6 Sugiyamaella lignohabitans Ies6p XP_018734500.1 791751 D 796027 CDS AWJ20_257 30034495 complement(796540..797376) A 1 NC_031672.1 Subunit of tRNA-specific adenosine-34 deaminase; forms a heterodimer with Tad2p that converts adenosine to inosine at the wobble position of several tRNAs; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0008251 - tRNA-specific adenosine deaminase activity [Evidence IDA] [PMID 10550050]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0006400 - tRNA modification [Evidence IDA] [PMID 10550050]; GO_process: GO:0008033 - tRNA processing [Evidence IEA]; Tad3p 797376 TAD3 30034495 TAD3 Sugiyamaella lignohabitans Tad3p XP_018734501.1 796540 R 796027 CDS AWJ20_258 30034506 complement(803537..804172) A 1 NC_031672.1 Cytosolic copper-zinc superoxide dismutase; detoxifies superoxide; stabilizes Yck1p and Yck2p kinases in glucose to repress respiration; phosphorylated by Dun1p and enters the nucleus under oxidative stress to promote transcription of stress response genes; human ortholog implicated in ALS; abundance increases under DNA replication stress and during exposure to boric acid; localization of a fraction to the mitochondrial intermembrane space is modulated by the MICOS complex; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 11500508]; GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IEA]; GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IDA] [PMID 11500508]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 18977757]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 24647101]; GO_function: GO:0016209 - antioxidant activity [Evidence IEA]; GO_function: GO:0005507 - copper ion binding [Evidence IBA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA,IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0004784 - superoxide dismutase activity [Evidence IEA,IEA]; GO_function: GO:0004784 - superoxide dismutase activity [Evidence IDA] [PMID 3290902]; GO_function: GO:0008270 - zinc ion binding [Evidence IBA]; GO_process: GO:0001320 - age-dependent response to reactive oxygen species involved in chronological cell aging [Evidence IMP] [PMID 8647826]; GO_process: GO:0006878 - cellular copper ion homeostasis [Evidence IMP] [PMID 8530401]; GO_process: GO:0006882 - cellular zinc ion homeostasis [Evidence IMP] [PMID 11581253]; GO_process: GO:0031505 - fungal-type cell wall organization [Evidence IMP] [PMID 20176017]; GO_process: GO:1901856 - negative regulation of cellular respiration [Evidence IMP] [PMID 23332757]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0051091 - positive regulation of sequence-specific DNA binding transcription factor activity [Evidence IMP] [PMID 18977757]; GO_process: GO:0036091 - positive regulation of transcription from RNA polymerase II promoter in response to oxidative stress [Evidence IMP] [PMID 24647101]; GO_process: GO:0050821 - protein stabilization [Evidence IMP,IPI] [PMID 23332757]; GO_process: GO:0019430 - removal of superoxide radicals [Evidence IBA]; GO_process: GO:0006801 - superoxide metabolic process [Evidence IEA]; GO_process: GO:0006801 - superoxide metabolic process [Evidence IMP] [PMID 3290902]; superoxide dismutase SOD1 804172 SOD1 30034506 SOD1 Sugiyamaella lignohabitans superoxide dismutase SOD1 XP_018734502.1 803537 R 796027 CDS AWJ20_259 30034517 807445..808455 A 1 NC_031672.1 Pc12g14970 808455 30034517 AWJ20_259 Sugiyamaella lignohabitans Pc12g14970 XP_018734503.1 807445 D 796027 CDS AWJ20_260 30034529 complement(809303..809662) A 1 NC_031672.1 uncharacterized protein 809662 30034529 AWJ20_260 Sugiyamaella lignohabitans uncharacterized protein XP_018734504.1 809303 R 796027 CDS AWJ20_261 30034540 join(809308..812348,812447..812684) A 1 NC_031672.1 Rho family guanine nucleotide exchange factor TUS1 812684 TUS1 30034540 TUS1 Sugiyamaella lignohabitans Rho family guanine nucleotide exchange factor TUS1 XP_018734505.1 809308 D 796027 CDS AWJ20_262 30034551 812875..814602 A 1 NC_031672.1 Rho family guanine nucleotide exchange factor ROM2 814602 ROM2 30034551 ROM2 Sugiyamaella lignohabitans Rho family guanine nucleotide exchange factor ROM2 XP_018734506.1 812875 D 796027 CDS AWJ20_263 30034562 complement(816386..816766) A 1 NC_031672.1 uncharacterized protein 816766 30034562 AWJ20_263 Sugiyamaella lignohabitans uncharacterized protein XP_018734507.1 816386 R 796027 CDS AWJ20_264 30034573 818272..820653 A 1 NC_031672.1 Cytoplasmic hypothetical protein; induced in response to mycotoxin patulin; ubiquitinated protein similar to the human ring finger motif protein RNF10; predicted to be involved in repair of alkylated DNA due to interaction with MAG1; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; Mag2p 820653 MAG2 30034573 MAG2 Sugiyamaella lignohabitans Mag2p XP_018734508.1 818272 D 796027 CDS AWJ20_265 30034584 complement(820839..822593) A 1 NC_031672.1 Coronin; cortical actin cytoskeletal component that associates with the Arp2p/Arp3p complex to regulate its activity; plays a role in regulation of actin patch assembly; GO_component: GO:0005885 - Arp2/3 protein complex [Evidence IDA,IPI] [PMID 12499356]; GO_component: GO:0030479 - actin cortical patch [Evidence IDA] [PMID 9822583]; GO_component: GO:0005826 - actomyosin contractile ring [Evidence IBA]; GO_function: GO:0003779 - actin binding [Evidence IEA]; GO_function: GO:0051015 - actin filament binding [Evidence IEA]; GO_function: GO:0051015 - actin filament binding [Evidence IDA] [PMID 9885246]; GO_function: GO:0008017 - microtubule binding [Evidence IDA] [PMID 9885246]; GO_function: GO:0030674 - protein binding, bridging [Evidence IDA] [PMID 9885246]; GO_process: GO:0051666 - actin cortical patch localization [Evidence IMP] [PMID 18177206]; GO_process: GO:0007015 - actin filament organization [Evidence IMP,IPI] [PMID 9885246]; GO_process: GO:0007017 - microtubule-based process [Evidence IPI] [PMID 9885246]; GO_process: GO:0034316 - negative regulation of Arp2/3 complex-mediated actin nucleation [Evidence IDA,IMP] [PMID 12499356]; GO_process: GO:2000601 - positive regulation of Arp2/3 complex-mediated actin nucleation [Evidence IDA,IMP] [PMID 21454476]; Crn1p 822593 CRN1 30034584 CRN1 Sugiyamaella lignohabitans Crn1p XP_018734509.1 820839 R 796027 CDS AWJ20_266 30034595 824006..825157 A 1 NC_031672.1 Mitochondrial aldehyde dehydrogenase; required for growth on ethanol and conversion of acetaldehyde to acetate; phosphorylated; activity is K+ dependent; utilizes NADP+ or NAD+ equally as coenzymes; expression is glucose repressed; can substitute for cytosolic NADP-dependent aldehyde dehydrogenase when directed to the cytosol; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA]; GO_component: GO:0042645 - mitochondrial nucleoid [Evidence IDA] [PMID 10869431]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 11502169]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0004029 - aldehyde dehydrogenase (NAD) activity [Evidence IDA] [PMID 9473035]; GO_function: GO:0004029 - aldehyde dehydrogenase (NAD) activity [Evidence IMP] [PMID 9675847]; GO_function: GO:0004030 - aldehyde dehydrogenase [NAD(P)+] activity [Evidence IEA]; GO_function: GO:0004030 - aldehyde dehydrogenase [NAD(P)+] activity [Evidence IDA] [PMID 9473035]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0016620 - oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor [Evidence IEA]; GO_process: GO:0006740 - NADPH regeneration [Evidence IGI] [PMID 19158096]; GO_process: GO:0019413 - acetate biosynthetic process [Evidence IGI] [PMID 10919763]; GO_process: GO:0006067 - ethanol metabolic process [Evidence IMP] [PMID 9675847]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0006090 - pyruvate metabolic process [Evidence IMP] [PMID 10409655]; aldehyde dehydrogenase (NADP(+)) ALD4 825157 ALD4 30034595 ALD4 Sugiyamaella lignohabitans aldehyde dehydrogenase (NADP(+)) ALD4 XP_018734510.1 824006 D 796027 CDS AWJ20_267 30034606 825275..825508 A 1 NC_031672.1 uncharacterized protein 825508 30034606 AWJ20_267 Sugiyamaella lignohabitans uncharacterized protein XP_018734511.1 825275 D 796027 CDS AWJ20_268 30034617 833710..836196 A 1 NC_031672.1 Glutamine tRNA synthetase; monomeric class I tRNA synthetase that catalyzes the specific glutaminylation of tRNA(Glu); N-terminal domain proposed to be involved in enzyme-tRNA interactions; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 15706032]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 15706032]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004812 - aminoacyl-tRNA ligase activity [Evidence IEA,IEA]; GO_function: GO:0004819 - glutamine-tRNA ligase activity [Evidence IEA,IEA]; GO_function: GO:0004819 - glutamine-tRNA ligase activity [Evidence IDA] [PMID 2991203]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0016876 - ligase activity, forming aminoacyl-tRNA and related compounds [Evidence IEA]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_process: GO:0006425 - glutaminyl-tRNA aminoacylation [Evidence IEA]; GO_process: GO:0006425 - glutaminyl-tRNA aminoacylation [Evidence IMP,ISS] [PMID 2991203]; GO_process: GO:0043039 - tRNA aminoacylation [Evidence IEA]; GO_process: GO:0006418 - tRNA aminoacylation for protein translation [Evidence IEA]; GO_process: GO:0006412 - translation [Evidence IEA,IEA]; glutamine--tRNA ligase 836196 GLN4 30034617 GLN4 Sugiyamaella lignohabitans glutamine--tRNA ligase XP_018734512.1 833710 D 796027 CDS AWJ20_269 30034628 839956..842436 A 1 NC_031672.1 F-box protein containing five copies of the WD40 motif; controls cell cycle function, sulfur metabolism, and methionine biosynthesis as part of the ubiquitin ligase complex; interacts with and regulates Met4p, localizes within the nucleus; dissociation of Met30p from SCF complex in response to cadmium stress is regulated by Cdc48p; GO_component: GO:0019005 - SCF ubiquitin ligase complex [Evidence IDA] [PMID 9716410]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0043224 - nuclear SCF ubiquitin ligase complex [Evidence IDA] [PMID 10637232]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 10637232]; GO_function: GO:0043130 - ubiquitin binding [Evidence IDA] [PMID 21070969]; GO_process: GO:0006270 - DNA replication initiation [Evidence IMP] [PMID 15870262]; GO_process: GO:0000082 - G1/S transition of mitotic cell cycle [Evidence IMP] [PMID 15870262]; GO_process: GO:0031146 - SCF-dependent proteasomal ubiquitin-dependent protein catabolic process [Evidence IGI] [PMID 9716410]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0019344 - cysteine biosynthetic process [Evidence IEA]; GO_process: GO:0009086 - methionine biosynthetic process [Evidence IEA]; GO_process: GO:0000209 - protein polyubiquitination [Evidence IMP] [PMID 9716410]; GO_process: GO:0016567 - protein ubiquitination [Evidence IEA]; GO_process: GO:0016567 - protein ubiquitination [Evidence IGI,IPI] [PMID 9499404]; GO_process: GO:0030174 - regulation of DNA-dependent DNA replication initiation [Evidence IMP] [PMID 15870262]; GO_process: GO:0000083 - regulation of transcription involved in G1/S transition of mitotic cell cycle [Evidence IMP] [PMID 15870262]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0046685 - response to arsenic-containing substance [Evidence IDA] [PMID 15689486]; GO_process: GO:0046686 - response to cadmium ion [Evidence IDA] [PMID 15689486]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Met30p 842436 MET30 30034628 MET30 Sugiyamaella lignohabitans Met30p XP_018734513.1 839956 D 796027 CDS AWJ20_270 30034640 853989..856904 A 1 NC_031672.1 protein phosphatase regulator GAC1 856904 GAC1 30034640 GAC1 Sugiyamaella lignohabitans protein phosphatase regulator GAC1 XP_018734514.1 853989 D 796027 CDS AWJ20_271 30034651 859190..860950 A 1 NC_031672.1 DEAD-box protein required for 27S rRNA processing; exhibits DNA, RNA and DNA/RNA helicase activities; ATPase activity shows preference for DNA over RNA; DNA helicase activity abolished by mutation in RNA-binding domain; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 11565753]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004003 - ATP-dependent DNA helicase activity [Evidence IDA] [PMID 15028736]; GO_function: GO:0033680 - ATP-dependent DNA/RNA helicase activity [Evidence IDA] [PMID 15028736]; GO_function: GO:0004004 - ATP-dependent RNA helicase activity [Evidence IDA] [PMID 15028736]; GO_function: GO:0008026 - ATP-dependent helicase activity [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0004386 - helicase activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0000463 - maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 11565753]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; Dbp9p 860950 DBP9 30034651 DBP9 Sugiyamaella lignohabitans Dbp9p XP_018734515.1 859190 D 796027 CDS AWJ20_272 30034662 complement(861644..862252) A 1 NC_031672.1 uncharacterized protein 862252 30034662 AWJ20_272 Sugiyamaella lignohabitans uncharacterized protein XP_018734516.1 861644 R 796027 CDS AWJ20_273 30034673 complement(863178..864119) A 1 NC_031672.1 Glycerol dehydrogenase; involved in an alternative pathway for glycerol catabolism used under microaerobic conditions; also has mRNA binding activity; member of the aldo-keto reductase (AKR) family; protein abundance increases in response to DNA replication stress; GCY1 has a paralog, YPR1, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0004032 - alditol:NADP+ 1-oxidoreductase activity [Evidence IDA,ISS] [PMID 11306085]; GO_function: GO:0004033 - aldo-keto reductase (NADP) activity [Evidence IDA] [PMID 10818358]; GO_function: GO:0004033 - aldo-keto reductase (NADP) activity [Evidence IDA] [PMID 17140678]; GO_function: GO:0047953 - glycerol 2-dehydrogenase (NADP+) activity [Evidence IEA]; GO_function: GO:1990042 - glycerol dehydrogenase [NAD(P)+] activity [Evidence IMP] [PMID 22979944]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 20844764]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IDA] [PMID 17962934]; GO_process: GO:0042843 - D-xylose catabolic process [Evidence IDA] [PMID 12271459]; GO_process: GO:0019568 - arabinose catabolic process [Evidence IDA] [PMID 12271459]; GO_process: GO:0034599 - cellular response to oxidative stress [Evidence IGI] [PMID 17919749]; GO_process: GO:0006071 - glycerol metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; glycerol 2-dehydrogenase (NADP(+)) GCY1 864119 GCY1 30034673 GCY1 Sugiyamaella lignohabitans glycerol 2-dehydrogenase (NADP(+)) GCY1 XP_018734517.1 863178 R 796027 CDS AWJ20_274 30034684 complement(868545..869027) A 1 NC_031672.1 Suppressor of sphingoid LCB sensitivity of an LCB-lyase mutation; putative integral membrane transporter or flippase that may transport long chain bases (LCBs) from the cytoplasmic side toward the extracytoplasmic side of the membrane; GO_component: GO:0071944 - cell periphery [Evidence IDA] [PMID 24146988]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 12034738]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IDA] [PMID 12034738]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 12034738]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 16407254]; GO_function: GO:0004012 - phospholipid-translocating ATPase activity [Evidence IDA,ISS] [PMID 12034738]; GO_process: GO:0015908 - fatty acid transport [Evidence IDA] [PMID 12034738]; GO_process: GO:0006869 - lipid transport [Evidence IEA]; GO_process: GO:0045332 - phospholipid translocation [Evidence IMP] [PMID 15342785]; GO_process: GO:0006950 - response to stress [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; phospholipid-translocating ATPase RSB1 869027 RSB1 30034684 RSB1 Sugiyamaella lignohabitans phospholipid-translocating ATPase RSB1 XP_018734518.1 868545 R 796027 CDS AWJ20_275 30034695 872862..876281 A 1 NC_031672.1 Zinc finger transcriptional activator of the Zn2Cys6 family; activates transcription of aromatic amino acid catabolic genes in the presence of aromatic amino acids; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 23651256]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19158363]; GO_function: GO:0000981 - sequence-specific DNA binding RNA polymerase II transcription factor activity [Evidence IEA]; GO_function: GO:0000981 - sequence-specific DNA binding RNA polymerase II transcription factor activity [Evidence ISS] [PMID 10207060]; GO_function: GO:0000981 - sequence-specific DNA binding RNA polymerase II transcription factor activity [Evidence IDA] [PMID 23651256]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0006559 - L-phenylalanine catabolic process [Evidence IEA]; GO_process: GO:0009074 - aromatic amino acid family catabolic process [Evidence IMP] [PMID 10207060]; GO_process: GO:0009083 - branched-chain amino acid catabolic process [Evidence IEA]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 10207060]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA,IEA]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006569 - tryptophan catabolic process [Evidence IEA]; GO_process: GO:0006572 - tyrosine catabolic process [Evidence IEA]; Aro80p 876281 ARO80 30034695 ARO80 Sugiyamaella lignohabitans Aro80p XP_018734519.1 872862 D 796027 CDS AWJ20_276 30034706 complement(876451..877122) A 1 NC_031672.1 Monocarboxylate/proton symporter of the plasma membrane; transport activity is dependent on the pH gradient across the membrane; mediates high-affinity uptake of carbon sources lactate, pyuvate, and acetate, and also of the micronutrient selenite, whose structure mimics that of monocarboxylates; expression and localization are tightly regulated, with transcription repression, mRNA degradation, and protein endocytosis and degradation all occurring in the presence of glucose; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 17710650]; GO_function: GO:0015144 - carbohydrate transmembrane transporter activity [Evidence IEA]; GO_function: GO:0015355 - secondary active monocarboxylate transmembrane transporter activity [Evidence IMP] [PMID 17710650]; GO_function: GO:0097079 - selenite:proton symporter activity [Evidence IMP] [PMID 20861301]; GO_function: GO:0022857 - transmembrane transporter activity [Evidence IEA]; GO_process: GO:0034219 - carbohydrate transmembrane transport [Evidence IEA]; GO_process: GO:0035879 - plasma membrane lactate transport [Evidence IMP] [PMID 10198029]; GO_process: GO:0035879 - plasma membrane lactate transport [Evidence IMP] [PMID 17710650]; GO_process: GO:0006849 - plasma membrane pyruvate transport [Evidence IMP] [PMID 17710650]; GO_process: GO:0097080 - plasma membrane selenite transport [Evidence IMP] [PMID 20861301]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Jen1p 877122 JEN1 30034706 JEN1 Sugiyamaella lignohabitans Jen1p XP_018734520.1 876451 R 796027 CDS AWJ20_277 30034717 877483..877821 A 1 NC_031672.1 uncharacterized protein 877821 30034717 AWJ20_277 Sugiyamaella lignohabitans uncharacterized protein XP_018734521.1 877483 D 796027 CDS AWJ20_278 30034728 complement(877627..877983) A 1 NC_031672.1 Monocarboxylate/proton symporter of the plasma membrane; transport activity is dependent on the pH gradient across the membrane; mediates high-affinity uptake of carbon sources lactate, pyuvate, and acetate, and also of the micronutrient selenite, whose structure mimics that of monocarboxylates; expression and localization are tightly regulated, with transcription repression, mRNA degradation, and protein endocytosis and degradation all occurring in the presence of glucose; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 17710650]; GO_function: GO:0015144 - carbohydrate transmembrane transporter activity [Evidence IEA]; GO_function: GO:0015355 - secondary active monocarboxylate transmembrane transporter activity [Evidence IMP] [PMID 17710650]; GO_function: GO:0097079 - selenite:proton symporter activity [Evidence IMP] [PMID 20861301]; GO_function: GO:0022857 - transmembrane transporter activity [Evidence IEA]; GO_process: GO:0034219 - carbohydrate transmembrane transport [Evidence IEA]; GO_process: GO:0035879 - plasma membrane lactate transport [Evidence IMP] [PMID 10198029]; GO_process: GO:0035879 - plasma membrane lactate transport [Evidence IMP] [PMID 17710650]; GO_process: GO:0006849 - plasma membrane pyruvate transport [Evidence IMP] [PMID 17710650]; GO_process: GO:0097080 - plasma membrane selenite transport [Evidence IMP] [PMID 20861301]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Jen1p 877983 JEN1 30034728 JEN1 Sugiyamaella lignohabitans Jen1p XP_018734522.1 877627 R 796027 CDS AWJ20_279 30034739 complement(879158..881605) A 1 NC_031672.1 uncharacterized protein 881605 30034739 AWJ20_279 Sugiyamaella lignohabitans uncharacterized protein XP_018734523.1 879158 R 796027 CDS AWJ20_280 30034751 complement(883138..883896) A 1 NC_031672.1 uncharacterized protein 883896 30034751 AWJ20_280 Sugiyamaella lignohabitans uncharacterized protein XP_018734524.1 883138 R 796027 CDS AWJ20_281 30034762 885257..886156 A 1 NC_031672.1 1-phosphatidylinositol phosphodiesterase 886156 PLC2 30034762 PLC2 Sugiyamaella lignohabitans 1-phosphatidylinositol phosphodiesterase XP_018734525.1 885257 D 796027 CDS AWJ20_282 30034773 886728..887561 A 1 NC_031672.1 3'-phosphoadenylsulfate reductase; reduces 3'-phosphoadenylyl sulfate to adenosine-3',5'-bisphosphate and free sulfite using reduced thioredoxin as cosubstrate, involved in sulfate assimilation and methionine metabolism; GO_component: GO:0005737 - cytoplasm [Evidence IC] [PMID 3060034]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0004604 - phosphoadenylyl-sulfate reductase (thioredoxin) activity [Evidence IEA,IEA]; GO_function: GO:0004604 - phosphoadenylyl-sulfate reductase (thioredoxin) activity [Evidence IMP] [PMID 2203779]; GO_function: GO:0004604 - phosphoadenylyl-sulfate reductase (thioredoxin) activity [Evidence IDA] [PMID 3060034]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0019344 - cysteine biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0070814 - hydrogen sulfide biosynthetic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0009086 - methionine biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0019379 - sulfate assimilation, phosphoadenylyl sulfate reduction by phosphoadenylyl-sulfate reductase (thioredoxin) [Evidence IEA]; GO_process: GO:0019379 - sulfate assimilation, phosphoadenylyl sulfate reduction by phosphoadenylyl-sulfate reductase (thioredoxin) [Evidence IMP] [PMID 197388]; GO_process: GO:0019379 - sulfate assimilation, phosphoadenylyl sulfate reduction by phosphoadenylyl-sulfate reductase (thioredoxin) [Evidence IDA] [PMID 3060034]; GO_process: GO:0000096 - sulfur amino acid metabolic process [Evidence IMP] [PMID 1101032]; phosphoadenylyl-sulfate reductase (thioredoxin) 887561 MET16 30034773 MET16 Sugiyamaella lignohabitans phosphoadenylyl-sulfate reductase (thioredoxin) XP_018734526.1 886728 D 796027 CDS AWJ20_283 30034784 887930..889669 A 1 NC_031672.1 Protein required for synthesis of diphthamide; required along with Dph1p, Kti11p, Jjj3p, and Dph5p; diphthamide is a modified histidine residue of translation elongation factor 2 (Eft1p or Eft2p); may act in a complex with Dph1p and Kti11p; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0017183 - peptidyl-diphthamide biosynthetic process from peptidyl-histidine [Evidence IEA,IEA]; GO_process: GO:0017183 - peptidyl-diphthamide biosynthetic process from peptidyl-histidine [Evidence IMP] [PMID 15485916]; GO_process: GO:0017183 - peptidyl-diphthamide biosynthetic process from peptidyl-histidine [Evidence IMP] [PMID 8406038]; Dph2p 889669 DPH2 30034784 DPH2 Sugiyamaella lignohabitans Dph2p XP_018734527.1 887930 D 796027 CDS AWJ20_284 30034795 complement(join(889766..892799,893153..897309)) A 1 NC_031672.1 Presumed helicase and subunit of the Nrd1 complex (Nrd1p-Nab3p-Sen1p); complex interacts with the exosome to mediate 3' end formation of some mRNAs, snRNAs, snoRNAs, and CUTs; has a separate role in coordinating DNA replication with transcription, by associating with moving replication forks and preventing errors that occur when forks encounter transcribed regions; homolog of Senataxin, which is implicated in Ataxia-Oculomotor Apraxia 2 and a dominant form of ALS; GO_component: GO:0035649 - Nrd1 complex [Evidence IDA] [PMID 16427013]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 23222640]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 23222640]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 8544822]; GO_component: GO:0005657 - replication fork [Evidence IDA] [PMID 23141540]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0043141 - ATP-dependent 5'-3' DNA helicase activity [Evidence ISS] [PMID 10545196]; GO_function: GO:0032575 - ATP-dependent 5'-3' RNA helicase activity [Evidence ISS] [PMID 10545196]; GO_function: GO:0008094 - DNA-dependent ATPase activity [Evidence ISS] [PMID 10545196]; GO_function: GO:0008186 - RNA-dependent ATPase activity [Evidence ISS] [PMID 10545196]; GO_function: GO:0004386 - helicase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0019904 - protein domain specific binding [Evidence IDA,IMP] [PMID 22286094]; GO_process: GO:0006353 - DNA-templated transcription, termination [Evidence IMP] [PMID 23748379]; GO_process: GO:0031124 - mRNA 3'-end processing [Evidence IMP] [PMID 11565036]; GO_process: GO:0006378 - mRNA polyadenylation [Evidence IMP] [PMID 22123738]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0045005 - maintenance of fidelity involved in DNA-dependent DNA replication [Evidence IMP] [PMID 23141540]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0006364 - rRNA processing [Evidence IMP] [PMID 9365256]; GO_process: GO:1990248 - regulation of transcription from RNA polymerase II promoter in response to DNA damage [Evidence IMP] [PMID 23741394]; GO_process: GO:0016180 - snRNA processing [Evidence IMP] [PMID 9365256]; GO_process: GO:0031126 - snoRNA 3'-end processing [Evidence IMP] [PMID 11565036]; GO_process: GO:0008033 - tRNA processing [Evidence IEA]; GO_process: GO:0008033 - tRNA processing [Evidence IMP] [PMID 9365256]; GO_process: GO:0006369 - termination of RNA polymerase II transcription [Evidence IMP] [PMID 17157256]; putative DNA/RNA helicase SEN1 897309 SEN1 30034795 SEN1 Sugiyamaella lignohabitans putative DNA/RNA helicase SEN1 XP_018734528.1 889766 R 796027 CDS AWJ20_285 30034806 complement(898447..899124) A 1 NC_031672.1 Mitochondrial peroxiredoxin with thioredoxin peroxidase activity; has a role in reduction of hydroperoxides; reactivation requires Trr2p and glutathione; induced during respiratory growth and oxidative stress; phosphorylated; protein abundance increases in response to DNA replication stress; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA,ISS] [PMID 10681558]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 10821871]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0016209 - antioxidant activity [Evidence IEA,IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0004601 - peroxidase activity [Evidence IEA]; GO_function: GO:0051920 - peroxiredoxin activity [Evidence IEA,IEA]; GO_function: GO:0008379 - thioredoxin peroxidase activity [Evidence IDA,IMP,ISS] [PMID 10681558]; GO_function: GO:0008379 - thioredoxin peroxidase activity [Evidence IDA] [PMID 10821871]; GO_process: GO:0045454 - cell redox homeostasis [Evidence IDA,IMP] [PMID 10681558]; GO_process: GO:0034599 - cellular response to oxidative stress [Evidence IGI] [PMID 15051715]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0046686 - response to cadmium ion [Evidence IMP] [PMID 19332553]; Prx1p 899124 PRX1 30034806 PRX1 Sugiyamaella lignohabitans Prx1p XP_018734529.1 898447 R 796027 CDS AWJ20_288 30034839 complement(902782..905577) A 1 NC_031672.1 Pho85p cyclin of the Pho80p subfamily; forms the major Glc8p kinase together with Pcl7p and Pho85p; involved in the control of glycogen storage by Pho85p; stabilized by Elongin C binding; PCL6 has a paralog, PCL7, that arose from the whole genome duplication; GO_component: GO:0000307 - cyclin-dependent protein kinase holoenzyme complex [Evidence TAS] [PMID 11602261]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0016538 - cyclin-dependent protein serine/threonine kinase regulator activity [Evidence TAS] [PMID 11602261]; GO_function: GO:0019901 - protein kinase binding [Evidence IEA]; GO_process: GO:0005975 - carbohydrate metabolic process [Evidence IEA]; GO_process: GO:0005977 - glycogen metabolic process [Evidence IEA]; GO_process: GO:0000079 - regulation of cyclin-dependent protein serine/threonine kinase activity [Evidence IEA]; GO_process: GO:0005979 - regulation of glycogen biosynthetic process [Evidence IGI] [PMID 11602261]; GO_process: GO:0005981 - regulation of glycogen catabolic process [Evidence IGI] [PMID 11602261]; Pcl6p 905577 PCL6 30034839 PCL6 Sugiyamaella lignohabitans Pcl6p XP_018734530.1 902782 R 796027 CDS AWJ20_289 30034850 912132..914804 A 1 NC_031672.1 Disaggregase; heat shock protein that cooperates with Ydj1p (Hsp40) and Ssa1p (Hsp70) to refold and reactivate previously denatured, aggregated proteins; responsive to stresses including: heat, ethanol, and sodium arsenite; involved in [PSI+] propagation; protein becomes more abundant and forms cytoplasmic foci in response to DNA replication stress; potentiated Hsp104p variants decrease TDP-43 proteotoxicity by eliminating its cytoplasmic aggregation; GO_component: GO:0072380 - TRC complex [Evidence IDA] [PMID 20850366]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 10467108]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 10467108]; GO_function: GO:0043531 - ADP binding [Evidence IMP] [PMID 11867765]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0005524 - ATP binding [Evidence IMP] [PMID 11867765]; GO_function: GO:0042623 - ATPase activity, coupled [Evidence IDA,IMP] [PMID 16135516]; GO_function: GO:0042623 - ATPase activity, coupled [Evidence IMP] [PMID 9674429]; GO_function: GO:0051087 - chaperone binding [Evidence IDA] [PMID 9674429]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_function: GO:0051082 - unfolded protein binding [Evidence IDA] [PMID 16135516]; GO_process: GO:0070370 - cellular heat acclimation [Evidence IMP] [PMID 2188365]; GO_process: GO:0070389 - chaperone cofactor-dependent protein refolding [Evidence IDA] [PMID 9674429]; GO_process: GO:0001319 - inheritance of oxidatively modified proteins involved in replicative cell aging [Evidence IGI,IMP] [PMID 17908928]; GO_process: GO:0034975 - protein folding in endoplasmic reticulum [Evidence IMP] [PMID 10931304]; GO_process: GO:0019538 - protein metabolic process [Evidence IEA]; GO_process: GO:0043335 - protein unfolding [Evidence IMP] [PMID 7984243]; GO_process: GO:0006950 - response to stress [Evidence IEA]; GO_process: GO:0070414 - trehalose metabolism in response to heat stress [Evidence IMP] [PMID 9797333]; chaperone ATPase HSP104 914804 HSP104 30034850 HSP104 Sugiyamaella lignohabitans chaperone ATPase HSP104 XP_018734531.1 912132 D 796027 CDS AWJ20_290 30034862 complement(913598..913825) A 1 NC_031672.1 uncharacterized protein 913825 30034862 AWJ20_290 Sugiyamaella lignohabitans uncharacterized protein XP_018734532.1 913598 R 796027 CDS AWJ20_291 30034873 complement(915066..915644) A 1 NC_031672.1 Constituent of 66S pre-ribosomal particles; has similarity to human translation initiation factor 6 (eIF6); may be involved in the biogenesis and or stability of 60S ribosomal subunits; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11238882]; GO_component: GO:0005730 - nucleolus [Evidence IEA,IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 17353896]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11238882]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 11583614]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 16188229]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 17443350]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 22735702]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 23212245]; GO_function: GO:0043023 - ribosomal large subunit binding [Evidence IEA]; GO_function: GO:0043023 - ribosomal large subunit binding [Evidence IDA] [PMID 9891075]; GO_function: GO:0043022 - ribosome binding [Evidence IEA]; GO_function: GO:0003743 - translation initiation factor activity [Evidence IEA,IEA]; GO_process: GO:1902626 - assembly of large subunit precursor of preribosome [Evidence IMP] [PMID 22735702]; GO_process: GO:0000466 - maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 11238882]; GO_process: GO:0000463 - maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 11238882]; GO_process: GO:0042256 - mature ribosome assembly [Evidence IEA,IEA]; GO_process: GO:0006364 - rRNA processing [Evidence IGI] [PMID 17353896]; GO_process: GO:0042273 - ribosomal large subunit biogenesis [Evidence IEA]; GO_process: GO:0042273 - ribosomal large subunit biogenesis [Evidence IMP] [PMID 10206977]; GO_process: GO:0042273 - ribosomal large subunit biogenesis [Evidence IMP] [PMID 11238882]; GO_process: GO:0042273 - ribosomal large subunit biogenesis [Evidence IPI] [PMID 15100437]; GO_process: GO:0000054 - ribosomal subunit export from nucleus [Evidence IEA]; GO_process: GO:0000054 - ribosomal subunit export from nucleus [Evidence IGI] [PMID 17353896]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; GO_process: GO:0006412 - translation [Evidence IEA]; GO_process: GO:0006413 - translational initiation [Evidence IEA,IEA]; translation initiation factor 6 915644 TIF6 30034873 TIF6 Sugiyamaella lignohabitans translation initiation factor 6 XP_018734533.1 915066 R 796027 CDS AWJ20_292 30034884 complement(917035..918666) A 1 NC_031672.1 uncharacterized protein 918666 30034884 AWJ20_292 Sugiyamaella lignohabitans uncharacterized protein XP_018734534.1 917035 R 796027 CDS AWJ20_293 30034895 complement(921323..922939) A 1 NC_031672.1 E3 ubiquitin-protein ligase MARCH5 922939 30034895 AWJ20_293 Sugiyamaella lignohabitans E3 ubiquitin-protein ligase MARCH5 XP_018734535.1 921323 R 796027 CDS AWJ20_294 30034906 924187..925302 A 1 NC_031672.1 uncharacterized protein 925302 30034906 AWJ20_294 Sugiyamaella lignohabitans uncharacterized protein XP_018734536.1 924187 D 796027 CDS AWJ20_295 30034917 complement(925546..926142) A 1 NC_031672.1 uncharacterized protein 926142 30034917 AWJ20_295 Sugiyamaella lignohabitans uncharacterized protein XP_018734537.1 925546 R 796027 CDS AWJ20_296 30034928 928388..928954 A 1 NC_031672.1 Adenosine 5'-monophosphoramidase; interacts physically and genetically with Kin28p, a CDK and TFIIK subunit, and genetically with CAK1; member of the histidine triad (HIT) superfamily of nucleotide-binding proteins and similar to Hint; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IDA] [PMID 11805111]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence ISS] [PMID 9164465]; GO_process: GO:0009117 - nucleotide metabolic process [Evidence IDA] [PMID 11805111]; Hnt1p 928954 HNT1 30034928 HNT1 Sugiyamaella lignohabitans Hnt1p XP_018734538.1 928388 D 796027 CDS AWJ20_297 30034939 complement(929217..931241) A 1 NC_031672.1 B-type cyclin CLB2 931241 CLB2 30034939 CLB2 Sugiyamaella lignohabitans B-type cyclin CLB2 XP_018734539.1 929217 R 796027 CDS AWJ20_298 30034950 934497..937007 A 1 NC_031672.1 uncharacterized protein 937007 30034950 AWJ20_298 Sugiyamaella lignohabitans uncharacterized protein XP_018734540.1 934497 D 796027 CDS AWJ20_299 30034961 complement(937234..937743) A 1 NC_031672.1 hypothetical protein; contains a CSL Zn finger and a DnaJ-domain; involved in diphthamide biosynthesis; ortholog human Dph4; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0008198 - ferrous iron binding [Evidence IDA] [PMID 22367199]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_process: GO:0017183 - peptidyl-diphthamide biosynthetic process from peptidyl-histidine [Evidence IMP] [PMID 15485916]; Jjj3p 937743 JJJ3 30034961 JJJ3 Sugiyamaella lignohabitans Jjj3p XP_018734541.1 937234 R 796027 CDS AWJ20_300 30034974 938459..939697 A 1 NC_031672.1 RNA polymerase I subunit A49; essential for nucleolar assembly and for high polymerase loading rate; required for nucleolar localization of Rpa34p; GO_component: GO:0005736 - DNA-directed RNA polymerase I complex [Evidence IDA] [PMID 11486042]; GO_component: GO:0005736 - DNA-directed RNA polymerase I complex [Evidence IMP] [PMID 1409638]; GO_component: GO:0005736 - DNA-directed RNA polymerase I complex [Evidence IDA] [PMID 9837969]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 21263028]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0003899 - DNA-directed RNA polymerase activity [Evidence IEA,IEA]; GO_function: GO:0001054 - RNA polymerase I activity [Evidence IDA] [PMID 9837969]; GO_function: GO:0016779 - nucleotidyltransferase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0008361 - regulation of cell size [Evidence IMP] [PMID 12089449]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; GO_process: GO:0006362 - transcription elongation from RNA polymerase I promoter [Evidence IDA] [PMID 18160037]; GO_process: GO:0006360 - transcription from RNA polymerase I promoter [Evidence IDA] [PMID 9837969]; GO_process: GO:0042790 - transcription of nuclear large rRNA transcript from RNA polymerase I promoter [Evidence IMP] [PMID 12374750]; GO_process: GO:0042790 - transcription of nuclear large rRNA transcript from RNA polymerase I promoter [Evidence IGI] [PMID 9121426]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; DNA-directed RNA polymerase I subunit RPA49 939697 RPA49 30034974 RPA49 Sugiyamaella lignohabitans DNA-directed RNA polymerase I subunit RPA49 XP_018734542.1 938459 D 796027 CDS AWJ20_301 30034985 complement(940054..941709) A 1 NC_031672.1 High-affinity maltose transporter (alpha-glucoside transporter); inducible; encoded in the MAL1 complex locus; broad substrate specificity that includes maltotriose; required for isomaltose utilization; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence ISS] [PMID 16741702]; GO_component: GO:0005886 - plasma membrane [Evidence ISS] [PMID 8594329]; GO_function: GO:0005352 - alpha-glucoside:proton symporter activity [Evidence IDA] [PMID 12702465]; GO_function: GO:0005364 - maltose:proton symporter activity [Evidence IMP] [PMID 1999393]; GO_function: GO:0005364 - maltose:proton symporter activity [Evidence IMP] [PMID 8594329]; GO_function: GO:0022891 - substrate-specific transmembrane transporter activity [Evidence IEA]; GO_function: GO:0015293 - symporter activity [Evidence IEA]; GO_function: GO:0022857 - transmembrane transporter activity [Evidence IEA]; GO_function: GO:0015574 - trehalose transmembrane transporter activity [Evidence IDA] [PMID 12702465]; GO_process: GO:0008643 - carbohydrate transport [Evidence IEA]; GO_process: GO:0046352 - disaccharide catabolic process [Evidence IMP] [PMID 20562106]; GO_process: GO:0000023 - maltose metabolic process [Evidence IEA]; GO_process: GO:0015768 - maltose transport [Evidence IGI] [PMID 6371820]; GO_process: GO:0015768 - maltose transport [Evidence IMP] [PMID 8594329]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0015771 - trehalose transport [Evidence IDA] [PMID 12702465]; Mal11p 941709 MAL11 30034985 MAL11 Sugiyamaella lignohabitans Mal11p XP_018734543.1 940054 R 796027 CDS AWJ20_302 30034996 942926..944233 A 1 NC_031672.1 uncharacterized protein 944233 30034996 AWJ20_302 Sugiyamaella lignohabitans uncharacterized protein XP_018734544.1 942926 D 796027 CDS AWJ20_303 30035007 complement(944475..946499) A 1 NC_031672.1 uncharacterized protein 946499 30035007 AWJ20_303 Sugiyamaella lignohabitans uncharacterized protein XP_018734545.1 944475 R 796027 CDS AWJ20_304 30035018 947045..948394 A 1 NC_031672.1 uncharacterized protein 948394 30035018 AWJ20_304 Sugiyamaella lignohabitans uncharacterized protein XP_018734546.1 947045 D 796027 CDS AWJ20_305 30035029 948662..949303 A 1 NC_031672.1 uncharacterized protein 949303 30035029 AWJ20_305 Sugiyamaella lignohabitans uncharacterized protein XP_018734547.1 948662 D 796027 CDS AWJ20_306 30035040 complement(949782..952166) A 1 NC_031672.1 uncharacterized protein 952166 30035040 AWJ20_306 Sugiyamaella lignohabitans uncharacterized protein XP_018734548.1 949782 R 796027 CDS AWJ20_307 30035051 complement(952947..954305) A 1 NC_031672.1 Cytosolic seryl-tRNA synthetase; class II aminoacyl-tRNA synthetase that aminoacylates tRNA(Ser), displays tRNA-dependent amino acid recognition which enhances discrimination of the serine substrate, interacts with peroxin Pex21p; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004812 - aminoacyl-tRNA ligase activity [Evidence IEA,IEA]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_function: GO:0004828 - serine-tRNA ligase activity [Evidence IEA,IEA]; GO_function: GO:0004828 - serine-tRNA ligase activity [Evidence IDA] [PMID 3031581]; GO_process: GO:0097056 - selenocysteinyl-tRNA(Sec) biosynthetic process [Evidence IEA]; GO_process: GO:0006434 - seryl-tRNA aminoacylation [Evidence IEA]; GO_process: GO:0006434 - seryl-tRNA aminoacylation [Evidence IDA] [PMID 3031581]; GO_process: GO:0006418 - tRNA aminoacylation for protein translation [Evidence IEA]; GO_process: GO:0006412 - translation [Evidence IEA]; serine--tRNA ligase SES1 954305 SES1 30035051 SES1 Sugiyamaella lignohabitans serine--tRNA ligase SES1 XP_018734549.1 952947 R 796027 CDS AWJ20_308 30035062 957317..960346 A 1 NC_031672.1 hypothetical protein; predicted to contain a PINc domain; ESL1 has a paralog, ESL2, that arose from the whole genome duplication; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; Esl1p 960346 ESL1 30035062 ESL1 Sugiyamaella lignohabitans Esl1p XP_018734550.1 957317 D 796027 CDS AWJ20_309 30035073 961559..962311 A 1 NC_031672.1 uncharacterized protein 962311 30035073 AWJ20_309 Sugiyamaella lignohabitans uncharacterized protein XP_018734551.1 961559 D 796027 CDS AWJ20_310 30035085 963887..966256 A 1 NC_031672.1 Enzyme of the 'de novo' purine nucleotide biosynthetic pathway; contains aminoimidazole ribotide synthetase and glycinamide ribotide synthetase activities; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA,IEA]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA,IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0004637 - phosphoribosylamine-glycine ligase activity [Evidence IEA,IEA]; GO_function: GO:0004637 - phosphoribosylamine-glycine ligase activity [Evidence ISS] [PMID 3097325]; GO_function: GO:0004641 - phosphoribosylformylglycinamidine cyclo-ligase activity [Evidence IEA,IEA]; GO_function: GO:0004641 - phosphoribosylformylglycinamidine cyclo-ligase activity [Evidence ISS] [PMID 3097325]; GO_process: GO:0006189 - 'de novo' IMP biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0009113 - purine nucleobase biosynthetic process [Evidence IEA]; GO_process: GO:0006144 - purine nucleobase metabolic process [Evidence TAS] [PMID 9148957]; GO_process: GO:0006164 - purine nucleotide biosynthetic process [Evidence IEA]; bifunctional aminoimidazole ribotide synthase/glycinamide ribotide synthase 966256 ADE5,7 30035085 ADE5,7 Sugiyamaella lignohabitans bifunctional aminoimidazole ribotide synthase/glycinamide ribotide synthase XP_018734552.1 963887 D 796027 CDS AWJ20_311 30035096 complement(969152..970762) A 1 NC_031672.1 Cytoplasmic DExD/H-box helicase, stimulates mRNA decapping; coordinates distinct steps in mRNA function and decay, interacts with both the decapping and deadenylase complexes, role in translational repression, mRNA decay, and processing body dynamics; may have a role in mRNA export; C-terminus of Dhh1p interacts with Ngr1p and promotes POR1, but not EDC1 mRNA decay; forms cytoplasmic foci upon DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 12032091]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0000932 - cytoplasmic mRNA processing body [Evidence IEA]; GO_component: GO:0000932 - cytoplasmic mRNA processing body [Evidence IDA] [PMID 12730603]; GO_component: GO:0000932 - cytoplasmic mRNA processing body [Evidence IDA] [PMID 18611963]; GO_component: GO:0010494 - cytoplasmic stress granule [Evidence IDA] [PMID 20368989]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004004 - ATP-dependent RNA helicase activity [Evidence ISS] [PMID 12930949]; GO_function: GO:0008026 - ATP-dependent helicase activity [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003682 - chromatin binding [Evidence IDA] [PMID 23706738]; GO_function: GO:0004386 - helicase activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0003729 - mRNA binding [Evidence IDA,IDA] [PMID 23222640]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0005515 - protein binding [Evidence IPI] [PMID 11780629]; GO_function: GO:0090079 - translation regulator activity, nucleic acid binding [Evidence IGI,IMP] [PMID 22719226]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0033962 - cytoplasmic mRNA processing body assembly [Evidence IMP] [PMID 18182159]; GO_process: GO:0033962 - cytoplasmic mRNA processing body assembly [Evidence IGI] [PMID 18981231]; GO_process: GO:0000290 - deadenylation-dependent decapping of nuclear-transcribed mRNA [Evidence IMP] [PMID 11780629]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0051028 - mRNA transport [Evidence IEA]; GO_process: GO:0017148 - negative regulation of translation [Evidence IMP] [PMID 21844211]; GO_process: GO:0045900 - negative regulation of translational elongation [Evidence IGI,IMP] [PMID 22719226]; GO_process: GO:0006417 - regulation of translation [Evidence IEA]; GO_process: GO:0034063 - stress granule assembly [Evidence IMP] [PMID 18981231]; GO_process: GO:0006810 - transport [Evidence IEA]; DExD/H-box ATP-dependent RNA helicase DHH1 970762 DHH1 30035096 DHH1 Sugiyamaella lignohabitans DExD/H-box ATP-dependent RNA helicase DHH1 XP_018734553.1 969152 R 796027 CDS AWJ20_312 30035107 972230..974227 A 1 NC_031672.1 mitogen-activated protein kinase kinase STE7 974227 STE7 30035107 STE7 Sugiyamaella lignohabitans mitogen-activated protein kinase kinase STE7 XP_018734554.1 972230 D 796027 CDS AWJ20_313 30035118 complement(974469..974762) A 1 NC_031672.1 uncharacterized protein 974762 30035118 AWJ20_313 Sugiyamaella lignohabitans uncharacterized protein XP_018734555.1 974469 R 796027 CDS AWJ20_314 30035129 987840..989351 A 1 NC_031672.1 DNA-binding protein with preference for UV-damaged DNA; protein sequence contains three WD domains (WD-40 repeat); green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm and nucleus; potential regulatory target of Mbp1p, which binds to the promoter region; co-localizes with Hos2p in nuclear foci in response to DNA damage by MMS; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22367945]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0000790 - nuclear chromatin [Evidence IDA] [PMID 22367945]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_function: GO:0003677 - DNA binding [Evidence IDA] [PMID 22367945]; GO_process: GO:0008150 - biological_process [Evidence ND]; Cmr1p 989351 CMR1 30035129 CMR1 Sugiyamaella lignohabitans Cmr1p XP_018734556.1 987840 D 796027 CDS AWJ20_315 30035140 991873..993621 A 1 NC_031672.1 uncharacterized protein 993621 30035140 AWJ20_315 Sugiyamaella lignohabitans uncharacterized protein XP_018734557.1 991873 D 796027 CDS AWJ20_316 30035151 complement(993802..994497) A 1 NC_031672.1 Vacuolar carboxypeptidase Y (proteinase C, CPY); broad-specificity C-terminal exopeptidase involved in non-specific protein degradation in the vacuole; member of the serine carboxypeptidase family; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 11914276]; GO_component: GO:0000324 - fungal-type vacuole [Evidence IDA] [PMID 14562095]; GO_component: GO:0000324 - fungal-type vacuole [Evidence IDA] [PMID 23708375]; GO_component: GO:0005773 - vacuole [Evidence IEA,IEA,IEA]; GO_function: GO:0004180 - carboxypeptidase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_function: GO:0004185 - serine-type carboxypeptidase activity [Evidence IEA]; GO_function: GO:0004185 - serine-type carboxypeptidase activity [Evidence IDA,IMP] [PMID 8679540]; GO_process: GO:0046938 - phytochelatin biosynthetic process [Evidence IDA,IMP] [PMID 17408619]; GO_process: GO:0006508 - proteolysis [Evidence IEA,IEA]; GO_process: GO:0007039 - vacuolar protein catabolic process [Evidence TAS] [PMID 8789256]; carboxypeptidase C PRC1 994497 PRC1 30035151 PRC1 Sugiyamaella lignohabitans carboxypeptidase C PRC1 XP_018734558.1 993802 R 796027 CDS AWJ20_317 30035162 complement(994984..995475) A 1 NC_031672.1 Putative serine type carboxypeptidase; role in phytochelatin synthesis; green fluorescent protein (GFP)-fusion protein localizes to the vacuole; expression induced by nitrogen limitation in a GLN3, GAT1-independent manner; GO_component: GO:0000324 - fungal-type vacuole [Evidence IDA] [PMID 14562095]; GO_function: GO:0004180 - carboxypeptidase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_function: GO:0017171 - serine hydrolase activity [Evidence IDA,ISM] [PMID 14645503]; GO_function: GO:0004185 - serine-type carboxypeptidase activity [Evidence IEA]; GO_function: GO:0004185 - serine-type carboxypeptidase activity [Evidence ISA] [PMID 17408619]; GO_process: GO:0046938 - phytochelatin biosynthetic process [Evidence IGI] [PMID 17408619]; GO_process: GO:0006508 - proteolysis [Evidence IEA,IEA]; carboxypeptidase C 995475 30035162 AWJ20_317 Sugiyamaella lignohabitans carboxypeptidase C XP_018734559.1 994984 R 796027 CDS AWJ20_318 30035173 996453..997715 A 1 NC_031672.1 uncharacterized protein 997715 30035173 AWJ20_318 Sugiyamaella lignohabitans uncharacterized protein XP_018734560.1 996453 D 796027 CDS AWJ20_319 30035184 complement(998912..1001152) A 1 NC_031672.1 Beta-adaptin subunit of the clathrin-associated protein (AP-1) complex; binds clathrin; involved in clathrin-dependent Golgi protein sorting; protein abundance increases in response to DNA replication stress; GO_component: GO:0030121 - AP-1 adaptor complex [Evidence IPI,ISS] [PMID 10564262]; GO_component: GO:0005905 - coated pit [Evidence IEA,IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0030117 - membrane coat [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_function: GO:0030276 - clathrin binding [Evidence IPI,ISS] [PMID 10564262]; GO_function: GO:0008565 - protein transporter activity [Evidence IEA]; GO_process: GO:0006896 - Golgi to vacuole transport [Evidence IMP] [PMID 17003107]; GO_process: GO:0006886 - intracellular protein transport [Evidence IEA]; GO_process: GO:0015031 - protein transport [Evidence IEA,IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IEA]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IPI,ISS] [PMID 10564262]; Apl2p 1001152 APL2 30035184 APL2 Sugiyamaella lignohabitans Apl2p XP_018734561.1 998912 R 796027 CDS AWJ20_320 30035196 1002574..1003158 A 1 NC_031672.1 G-protein beta subunit and guanine dissociation inhibitor for Gpa2p; ortholog of RACK1 that inhibits translation; core component of the small (40S) ribosomal subunit; regulates P-body formation induced by replication stress; represses Gcn4p in the absence of amino acid starvation; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0022627 - cytosolic small ribosomal subunit [Evidence IDA] [PMID 15340087]; GO_function: GO:0001965 - G-protein alpha-subunit binding [Evidence IPI] [PMID 17591772]; GO_function: GO:0005092 - GDP-dissociation inhibitor activity [Evidence IDA] [PMID 17591772]; GO_function: GO:0004871 - signal transducer activity [Evidence IMP,IPI] [PMID 17591772]; GO_process: GO:0007186 - G-protein coupled receptor signaling pathway [Evidence IMP,IPI] [PMID 17591772]; GO_process: GO:0010255 - glucose mediated signaling pathway [Evidence IMP,IPI] [PMID 17591772]; GO_process: GO:0001403 - invasive growth in response to glucose limitation [Evidence IMP] [PMID 17591772]; GO_process: GO:0017148 - negative regulation of translation [Evidence IMP] [PMID 15340087]; guanine nucleotide-binding protein subunit beta 1003158 ASC1 30035196 ASC1 Sugiyamaella lignohabitans guanine nucleotide-binding protein subunit beta XP_018734562.1 1002574 D 796027 CDS AWJ20_321 30035207 complement(1004747..1007161) A 1 NC_031672.1 Mitochondrial intermediate peptidase; cleaves destabilizing N-terminal residues of a subset of proteins upon import, after their cleavage by mitochondrial processing peptidase (Mas1p-Mas2p); may contribute to mitochondrial iron homeostasis; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA]; GO_component: GO:0005759 - mitochondrial matrix [Evidence IDA] [PMID 8035833]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004222 - metalloendopeptidase activity [Evidence IEA]; GO_function: GO:0004222 - metalloendopeptidase activity [Evidence IDA,IMP] [PMID 8831696]; GO_function: GO:0008237 - metallopeptidase activity [Evidence IEA,IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_process: GO:0006879 - cellular iron ion homeostasis [Evidence IGI,IMP] [PMID 10332043]; GO_process: GO:0006627 - protein processing involved in protein targeting to mitochondrion [Evidence IMP] [PMID 8035833]; GO_process: GO:0050821 - protein stabilization [Evidence IMP] [PMID 21525245]; GO_process: GO:0006508 - proteolysis [Evidence IEA,IEA]; Oct1p 1007161 OCT1 30035207 OCT1 Sugiyamaella lignohabitans Oct1p XP_018734563.1 1004747 R 796027 CDS AWJ20_322 30035218 complement(1007892..1008998) A 1 NC_031672.1 Glutamine synthetase (GS); synthesizes glutamine from glutamate and ammonia; with Glt1p, forms the secondary pathway for glutamate biosynthesis from ammonia; expression regulated by nitrogen source and by amino acid limitation; forms filaments of back-to-back stacks of cylindrical homo-decamers at low pH, leading to enzymatic inactivation and storage during states of advanced cellular starvation; relocalizes from nucleus to cytoplasmic foci upon DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0004356 - glutamate-ammonia ligase activity [Evidence IEA,IEA]; GO_function: GO:0004356 - glutamate-ammonia ligase activity [Evidence IMP] [PMID 1347768]; GO_function: GO:0004356 - glutamate-ammonia ligase activity [Evidence IDA] [PMID 4156034]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006542 - glutamine biosynthetic process [Evidence IEA]; GO_process: GO:0006542 - glutamine biosynthetic process [Evidence IDA] [PMID 6129248]; GO_process: GO:0006807 - nitrogen compound metabolic process [Evidence IEA]; glutamate--ammonia ligase 1008998 GLN1 30035218 GLN1 Sugiyamaella lignohabitans glutamate--ammonia ligase XP_018734564.1 1007892 R 796027 CDS AWJ20_323 30035229 1022434..1024257 A 1 NC_031672.1 PAC motif binding protein involved in rRNA and ribosome biogenesis; subunit of the RPD3L histone deacetylase complex; Myb-like HTH transcription factor; hypophosphorylated by rapamycin treatment in a Sch9p-dependent manner; TOD6 has a paralog, DOT6, that arose from the whole genome duplication; GO_component: GO:0070210 - Rpd3L-Expanded complex [Evidence IDA] [PMID 19040720]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0003682 - chromatin binding [Evidence IEA]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19111667]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA,IDA] [PMID 19158363]; GO_process: GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 19158363]; Tod6p 1024257 TOD6 30035229 TOD6 Sugiyamaella lignohabitans Tod6p XP_018734565.1 1022434 D 796027 CDS AWJ20_324 30035240 complement(1025407..1027704) A 1 NC_031672.1 Histone acetyltransferase catalytic subunit of NuA3 complex; acetylates histone H3, involved in transcriptional silencing; homolog of the mammalian MOZ proto-oncogene; mutant has aneuploidy tolerance; sas3gcn5 double mutation is lethal; GO_component: GO:0033100 - NuA3 histone acetyltransferase complex [Evidence IDA] [PMID 10817755]; GO_component: GO:0033100 - NuA3 histone acetyltransferase complex [Evidence IDA] [PMID 17157260]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_function: GO:0004402 - histone acetyltransferase activity [Evidence IEA]; GO_function: GO:0004402 - histone acetyltransferase activity [Evidence IDA,IMP] [PMID 10817755]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016746 - transferase activity, transferring acyl groups [Evidence IEA]; GO_function: GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups [Evidence IEA]; GO_process: GO:0016568 - chromatin modification [Evidence IEA]; GO_process: GO:0016568 - chromatin modification [Evidence IMP] [PMID 11731478]; GO_process: GO:0030466 - chromatin silencing at silent mating-type cassette [Evidence IMP] [PMID 11731479]; GO_process: GO:0006348 - chromatin silencing at telomere [Evidence IMP] [PMID 11731479]; GO_process: GO:0016573 - histone acetylation [Evidence IDA,IMP] [PMID 10817755]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA,IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Sas3p 1027704 SAS3 30035240 SAS3 Sugiyamaella lignohabitans Sas3p XP_018734566.1 1025407 R 796027 CDS AWJ20_325 30035251 1028930..1030585 A 1 NC_031672.1 Protein with similarity to tRNA synthetases; non-tagged protein is detected in purified mitochondria; null mutant is viable and displays elevated frequency of mitochondrial genome loss; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004812 - aminoacyl-tRNA ligase activity [Evidence IEA,IEA]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_function: GO:0004827 - proline-tRNA ligase activity [Evidence IEA,IEA]; GO_function: GO:0004827 - proline-tRNA ligase activity [Evidence ISS] [PMID 10592175]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0006433 - prolyl-tRNA aminoacylation [Evidence IEA]; GO_process: GO:0006418 - tRNA aminoacylation for protein translation [Evidence IEA]; GO_process: GO:0006412 - translation [Evidence IEA]; putative proline--tRNA ligase AIM10 1030585 AIM10 30035251 AIM10 Sugiyamaella lignohabitans putative proline--tRNA ligase AIM10 XP_018734567.1 1028930 D 796027 CDS AWJ20_326 30035262 complement(1031592..1034678) A 1 NC_031672.1 Protein involved in G2/M phase progression and response to DNA damage; interacts with Rad53p; contains an RNA recognition motif, a nuclear localization signal, and several SQ/TQ cluster domains; hyperphosphorylated in response to DNA damage; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 23222640]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0000077 - DNA damage checkpoint [Evidence IGI,IPI] [PMID 15024067]; GO_process: GO:0000086 - G2/M transition of mitotic cell cycle [Evidence IMP] [PMID 15024067]; Pin4p 1034678 PIN4 30035262 PIN4 Sugiyamaella lignohabitans Pin4p XP_018734568.1 1031592 R 796027 CDS AWJ20_327 30035273 1036396..1037850 A 1 NC_031672.1 Protein involved in incorporating iron-sulfur clusters into proteins; mitochondrial matrix protein; involved in the incorporation of iron-sulfur clusters into mitochondrial aconitase-type proteins; activates the radical-SAM family members Bio2p and Lip5p; interacts with Ccr4p in the two-hybrid system; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA]; GO_component: GO:0005759 - mitochondrial matrix [Evidence IDA] [PMID 18086897]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0016226 - iron-sulfur cluster assembly [Evidence IMP] [PMID 18086897]; Iba57p 1037850 IBA57 30035273 IBA57 Sugiyamaella lignohabitans Iba57p XP_018734569.1 1036396 D 796027 CDS AWJ20_328 30035284 1039143..1040264 A 1 NC_031672.1 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) synthase; catalyzes the first step in aromatic amino acid biosynthesis and is feedback-inhibited by tyrosine or high concentrations of phenylalanine or tryptophan; relative distribution to the nucleus increases upon DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_function: GO:0003849 - 3-deoxy-7-phosphoheptulonate synthase activity [Evidence IEA,IEA]; GO_function: GO:0003849 - 3-deoxy-7-phosphoheptulonate synthase activity [Evidence IDA] [PMID 2880280]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0009073 - aromatic amino acid family biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0009058 - biosynthetic process [Evidence IEA]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0009423 - chorismate biosynthetic process [Evidence IEA]; GO_process: GO:0009423 - chorismate biosynthetic process [Evidence TAS] [PMID 1943992]; GO_process: GO:0006950 - response to stress [Evidence IEA]; 3-deoxy-7-phosphoheptulonate synthase ARO4 1040264 ARO4 30035284 ARO4 Sugiyamaella lignohabitans 3-deoxy-7-phosphoheptulonate synthase ARO4 XP_018734570.1 1039143 D 796027 CDS AWJ20_329 30035295 1042234..1043904 A 1 NC_031672.1 Imidazole glycerol phosphate synthase; glutamine amidotransferase:cyclase that catalyzes the fifth step of histidine biosynthesis and also produces 5-aminoimidazole-4-carboxamide ribotide (AICAR), a purine precursor; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005622 - intracellular [Evidence TAS] [PMID 8852895]; GO_function: GO:0003824 - catalytic activity [Evidence IEA,IEA]; GO_function: GO:0004359 - glutaminase activity [Evidence IDA] [PMID 10733892]; GO_function: GO:0000107 - imidazoleglycerol-phosphate synthase activity [Evidence IEA]; GO_function: GO:0000107 - imidazoleglycerol-phosphate synthase activity [Evidence IDA] [PMID 10733892]; GO_function: GO:0016829 - lyase activity [Evidence IEA]; GO_function: GO:0016833 - oxo-acid-lyase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016763 - transferase activity, transferring pentosyl groups [Evidence IEA]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0006541 - glutamine metabolic process [Evidence IEA]; GO_process: GO:0000105 - histidine biosynthetic process [Evidence IEA,IEA,IEA]; GO_process: GO:0000105 - histidine biosynthetic process [Evidence IMP] [PMID 14190241]; GO_process: GO:0008152 - metabolic process [Evidence IEA,IEA]; GO_process: GO:0006950 - response to stress [Evidence IEA]; imidazoleglycerol-phosphate synthase 1043904 HIS7 30035295 HIS7 Sugiyamaella lignohabitans imidazoleglycerol-phosphate synthase XP_018734571.1 1042234 D 796027 CDS AWJ20_330 30035307 complement(1044129..1044782) A 1 NC_031672.1 NAP family histone chaperone; binds to histones and Rtt109p, stimulating histone acetyltransferase activity; possesses nucleosome assembly activity in vitro; proposed role in vacuolar protein sorting and in double-strand break repair; protein abundance increases in response to DNA replication stress; relocalizes to the cytosol in response to hypoxia; GO_component: GO:0000785 - chromatin [Evidence IDA] [PMID 17344218]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 22932476]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22932476]; GO_function: GO:0010698 - acetyltransferase activator activity [Evidence IDA,IMP] [PMID 19172749]; GO_function: GO:0042393 - histone binding [Evidence IDA,IPI] [PMID 17344218]; GO_process: GO:0006303 - double-strand break repair via nonhomologous end joining [Evidence IMP,IPI] [PMID 18036332]; GO_process: GO:0006334 - nucleosome assembly [Evidence IEA]; GO_process: GO:0006334 - nucleosome assembly [Evidence IDA] [PMID 17344218]; GO_process: GO:0035066 - positive regulation of histone acetylation [Evidence IDA,IGI,IMP] [PMID 18458063]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Vps75p 1044782 VPS75 30035307 VPS75 Sugiyamaella lignohabitans Vps75p XP_018734572.1 1044129 R 796027 CDS AWJ20_331 30035318 complement(1045507..1046907) A 1 NC_031672.1 top hit is XP_007844384.1 originated in Moniliophthora roreri MCA 2997; membrane transporter 1046907 30035318 AWJ20_331 Sugiyamaella lignohabitans membrane transporter XP_018734573.1 1045507 R 796027 CDS AWJ20_332 30035329 complement(1048177..1048953) A 1 NC_031672.1 uncharacterized protein 1048953 30035329 AWJ20_332 Sugiyamaella lignohabitans uncharacterized protein XP_018734574.1 1048177 R 796027 CDS AWJ20_334 30035351 1052311..1053867 A 1 NC_031672.1 Subunit of the cytosolic chaperonin Cct ring complex; related to Tcp1p, required for the assembly of actin and tubulins in vivo; capable of binding Q/N rich proteins and mediating their folding; GO_component: GO:0005832 - chaperonin-containing T-complex [Evidence IPI] [PMID 15704212]; GO_component: GO:0005832 - chaperonin-containing T-complex [Evidence IDA] [PMID 16762366]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0051082 - unfolded protein binding [Evidence IEA]; GO_function: GO:0051082 - unfolded protein binding [Evidence IDA] [PMID 16762366]; GO_process: GO:0044267 - cellular protein metabolic process [Evidence IEA]; GO_process: GO:0006457 - protein folding [Evidence IEA]; GO_process: GO:0006457 - protein folding [Evidence IDA] [PMID 16762366]; Cct3p 1053867 CCT3 30035351 CCT3 Sugiyamaella lignohabitans Cct3p XP_018734575.1 1052311 D 796027 CDS AWJ20_335 30035362 complement(1053132..1053512) A 1 NC_031672.1 uncharacterized protein 1053512 30035362 AWJ20_335 Sugiyamaella lignohabitans uncharacterized protein XP_018734576.1 1053132 R 796027 CDS AWJ20_336 30035373 complement(1054782..1055975) A 1 NC_031672.1 Plasma membrane sulfite pump involved in sulfite metabolism; required for efficient sulfite efflux; major facilitator superfamily protein; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 9294463]; GO_function: GO:0000319 - sulfite transmembrane transporter activity [Evidence IDA] [PMID 10870099]; GO_process: GO:0000316 - sulfite transport [Evidence IDA] [PMID 10870099]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Ssu1p 1055975 SSU1 30035373 SSU1 Sugiyamaella lignohabitans Ssu1p XP_018734577.1 1054782 R 796027 CDS AWJ20_338 30035395 1060633..1062288 A 1 NC_031672.1 Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is processed to make a nucleocapsid-like protein (Gag), reverse transcriptase (RT), protease (PR), and integrase (IN); similar to retroviral genes; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9448009]; GO_component: GO:0000943 - retrotransposon nucleocapsid [Evidence ISS] [PMID 9582191]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA,IEA]; GO_function: GO:0003887 - DNA-directed DNA polymerase activity [Evidence ISS] [PMID 9582191]; GO_function: GO:0003723 - RNA binding [Evidence IEA,IEA]; GO_function: GO:0003723 - RNA binding [Evidence ISS] [PMID 9582191]; GO_function: GO:0004523 - RNA-DNA hybrid ribonuclease activity [Evidence IEA]; GO_function: GO:0003964 - RNA-directed DNA polymerase activity [Evidence IEA,IEA]; GO_function: GO:0003964 - RNA-directed DNA polymerase activity [Evidence ISS] [PMID 9582191]; GO_function: GO:0004190 - aspartic-type endopeptidase activity [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0004519 - endonuclease activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004518 - nuclease activity [Evidence IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016779 - nucleotidyltransferase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence ISS] [PMID 9582191]; GO_function: GO:0004540 - ribonuclease activity [Evidence ISS] [PMID 9582191]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0015074 - DNA integration [Evidence IEA,IEA]; GO_process: GO:0006310 - DNA recombination [Evidence IEA]; GO_process: GO:0006261 - DNA-dependent DNA replication [Evidence IEA,IEA]; GO_process: GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic [Evidence IEA]; GO_process: GO:0006278 - RNA-dependent DNA replication [Evidence IEA,IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0090305 - nucleic acid phosphodiester bond hydrolysis [Evidence IEA]; GO_process: GO:0006508 - proteolysis [Evidence IEA]; GO_process: GO:0032196 - transposition [Evidence IEA]; GO_process: GO:0032197 - transposition, RNA-mediated [Evidence ISS] [PMID 9582191]; GO_process: GO:0019076 - viral release from host cell [Evidence IEA]; gag-pol fusion protein 1062288 30035395 AWJ20_338 Sugiyamaella lignohabitans gag-pol fusion protein XP_018734578.1 1060633 D 796027 CDS AWJ20_339 30035406 1065284..1065661 A 1 NC_031672.1 Protein component of the small (40S) ribosomal subunit; homologous to mammalian ribosomal protein S18 and bacterial S13; RPS18B has a paralog, RPS18A, that arose from the whole genome duplication; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0022627 - cytosolic small ribosomal subunit [Evidence IBA]; GO_component: GO:0022627 - cytosolic small ribosomal subunit [Evidence NAS] [PMID 9559554]; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA,IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA,IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0019843 - rRNA binding [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence NAS] [PMID 9559554]; GO_process: GO:0002181 - cytoplasmic translation [Evidence NAS] [PMID 9559554]; GO_process: GO:0000447 - endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 14627813]; GO_process: GO:0006407 - rRNA export from nucleus [Evidence IGI] [PMID 16246728]; GO_process: GO:0006412 - translation [Evidence IEA]; ribosomal 40S subunit protein S18B 1065661 RPS18B 30035406 RPS18B Sugiyamaella lignohabitans ribosomal 40S subunit protein S18B XP_018734579.1 1065284 D 796027 CDS AWJ20_340 30035418 complement(1068017..1069060) A 1 NC_031672.1 Adenosine kinase; required for the utilization of S-adenosylmethionine (AdoMet); may be involved in recycling adenosine produced through the methyl cycle; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0004001 - adenosine kinase activity [Evidence IEA,IEA]; GO_function: GO:0004001 - adenosine kinase activity [Evidence IDA,IMP] [PMID 11223943]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016773 - phosphotransferase activity, alcohol group as acceptor [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0044209 - AMP salvage [Evidence IEA]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; GO_process: GO:0006144 - purine nucleobase metabolic process [Evidence IMP] [PMID 11223943]; GO_process: GO:0006166 - purine ribonucleoside salvage [Evidence IEA,IEA]; adenosine kinase 1069060 ADO1 30035418 ADO1 Sugiyamaella lignohabitans adenosine kinase XP_018734580.1 1068017 R 796027 CDS AWJ20_341 30035429 complement(1072257..1072868) A 1 NC_031672.1 Riboflavin kinase, produces riboflavin monophosphate (FMN); FMN is a necessary cofactor for many enzymes; predominantly localizes to the microsomal fraction and also found in the mitochondrial inner membrane; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA,IEA]; GO_component: GO:0043231 - intracellular membrane-bounded organelle [Evidence IEA,IEA]; GO_component: GO:0043231 - intracellular membrane-bounded organelle [Evidence IDA] [PMID 10887197]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IDA] [PMID 10887197]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0003919 - FMN adenylyltransferase activity [Evidence IDA] [PMID 10887197]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0008531 - riboflavin kinase activity [Evidence IEA,IEA]; GO_function: GO:0008531 - riboflavin kinase activity [Evidence IDA,IMP] [PMID 10887197]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0009398 - FMN biosynthetic process [Evidence IEA]; GO_process: GO:0009398 - FMN biosynthetic process [Evidence IDA,IMP] [PMID 10887197]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; GO_process: GO:0009231 - riboflavin biosynthetic process [Evidence IEA]; riboflavin kinase 1072868 FMN1 30035429 FMN1 Sugiyamaella lignohabitans riboflavin kinase XP_018734581.1 1072257 R 796027 CDS AWJ20_342 30035440 complement(1075092..1077197) A 1 NC_031672.1 nucleoporin GLE1 1077197 GLE1 30035440 GLE1 Sugiyamaella lignohabitans nucleoporin GLE1 XP_018734582.1 1075092 R 796027 CDS AWJ20_343 30035451 1078066..1078944 A 1 NC_031672.1 Mitochondrial ribosomal protein of the large subunit; MRPL7 produces both YmL5 and YmL7, which are two different modified forms of the same protein; GO_component: GO:0005762 - mitochondrial large ribosomal subunit [Evidence IDA] [PMID 9151978]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA,IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IDA] [PMID 9151978]; GO_process: GO:0032543 - mitochondrial translation [Evidence IC] [PMID 9151978]; GO_process: GO:0006412 - translation [Evidence IEA]; mitochondrial 54S ribosomal protein YmL7/YmL5 1078944 MRPL7 30035451 MRPL7 Sugiyamaella lignohabitans mitochondrial 54S ribosomal protein YmL7/YmL5 XP_018734583.1 1078066 D 796027 CDS AWJ20_344 30035462 complement(1079060..1081912) A 1 NC_031672.1 Essential beta-coat protein of the COPI coatomer; involved in ER-to-Golgi protein trafficking and maintenance of normal ER morphology; shares 43% sequence identity with mammalian beta-coat protein (beta-COP); GO_component: GO:0030126 - COPI vesicle coat [Evidence IEA]; GO_component: GO:0030126 - COPI vesicle coat [Evidence IGI,ISS] [PMID 7929113]; GO_component: GO:0030663 - COPI-coated vesicle membrane [Evidence IEA]; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA]; GO_component: GO:0030135 - coated vesicle [Evidence ISS] [PMID 7929113]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0031410 - cytoplasmic vesicle [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0030117 - membrane coat [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0005198 - structural molecule activity [Evidence IEA]; GO_process: GO:0006888 - ER to Golgi vesicle-mediated transport [Evidence IMP] [PMID 7929113]; GO_process: GO:0006886 - intracellular protein transport [Evidence IEA]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IEA,IEA]; Sec26p 1081912 SEC26 30035462 SEC26 Sugiyamaella lignohabitans Sec26p XP_018734584.1 1079060 R 796027 CDS AWJ20_345 30035473 complement(1083658..1084407) A 1 NC_031672.1 Essential protein associated with the U1 snRNP complex; splicing factor involved in recognition of 5' splice site; contains two zinc finger motifs; N-terminal zinc finger binds pre-mRNA; relocalizes to the cytosol in response to hypoxia; GO_component: GO:0005685 - U1 snRNP [Evidence IEA]; GO_component: GO:0005685 - U1 snRNP [Evidence IGI,IMP] [PMID 10500099]; GO_component: GO:0071004 - U2-type prespliceosome [Evidence IDA] [PMID 16618970]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 22932476]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22932476]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005681 - spliceosomal complex [Evidence IEA]; GO_function: GO:0003729 - mRNA binding [Evidence IEA]; GO_function: GO:0003729 - mRNA binding [Evidence IDA,IMP] [PMID 17726058]; GO_process: GO:0008380 - RNA splicing [Evidence IEA]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0006376 - mRNA splice site selection [Evidence IEA]; GO_process: GO:0006376 - mRNA splice site selection [Evidence IGI,IMP] [PMID 10500099]; Luc7p 1084407 LUC7 30035473 LUC7 Sugiyamaella lignohabitans Luc7p XP_018734585.1 1083658 R 796027 CDS AWJ20_346 30035484 1085508..1086065 A 1 NC_031672.1 Delta subunit of the oligosaccharyl transferase glycoprotein complex; complex is required for N-linked glycosylation of proteins in the endoplasmic reticulum; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0008250 - oligosaccharyltransferase complex [Evidence IEA]; GO_component: GO:0008250 - oligosaccharyltransferase complex [Evidence IPI] [PMID 10358084]; GO_component: GO:0008250 - oligosaccharyltransferase complex [Evidence IPI] [PMID 16297388]; GO_component: GO:0008250 - oligosaccharyltransferase complex [Evidence IPI] [PMID 9405463]; GO_function: GO:0004579 - dolichyl-diphosphooligosaccharide-protein glycotransferase activity [Evidence IMP] [PMID 9405463]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA]; GO_process: GO:0006487 - protein N-linked glycosylation [Evidence IEA]; GO_process: GO:0006487 - protein N-linked glycosylation [Evidence IPI] [PMID 9405463]; GO_process: GO:0006486 - protein glycosylation [Evidence IEA]; Swp1p 1086065 SWP1 30035484 SWP1 Sugiyamaella lignohabitans Swp1p XP_018734586.1 1085508 D 796027 CDS AWJ20_347 30035495 complement(1086329..1088482) A 1 NC_031672.1 uncharacterized protein 1088482 30035495 AWJ20_347 Sugiyamaella lignohabitans uncharacterized protein XP_018734587.1 1086329 R 796027 CDS AWJ20_348 30035506 complement(1093402..1095510) A 1 NC_031672.1 Homoaconitase; catalyzes the conversion of homocitrate to homoisocitrate, which is a step in the lysine biosynthesis pathway; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO_function: GO:0004409 - homoaconitate hydratase activity [Evidence IEA,IEA]; GO_function: GO:0004409 - homoaconitate hydratase activity [Evidence ISA] [PMID 9268014]; GO_function: GO:0051536 - iron-sulfur cluster binding [Evidence IEA]; GO_function: GO:0016829 - lyase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0009085 - lysine biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0019878 - lysine biosynthetic process via aminoadipic acid [Evidence IEA]; GO_process: GO:0019878 - lysine biosynthetic process via aminoadipic acid [Evidence IMP] [PMID 2507177]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; homoaconitate hydratase LYS4 1095510 LYS4 30035506 LYS4 Sugiyamaella lignohabitans homoaconitate hydratase LYS4 XP_018734588.1 1093402 R 796027 CDS AWJ20_349 30035517 1098352..1100556 A 1 NC_031672.1 DEAH-box RNA-dependent ATPase/ATP-dependent RNA helicase; associates with lariat intermediates before the second catalytic step of splicing; mediates ATP-dependent mRNA release from the spliceosome and unwinds RNA duplexes; required for proofreading the exon ligation reaction; GO_component: GO:0071007 - U2-type catalytic step 2 spliceosome [Evidence IMP] [PMID 9524130]; GO_component: GO:0071021 - U2-type post-spliceosomal complex [Evidence IMP] [PMID 12212850]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004004 - ATP-dependent RNA helicase activity [Evidence IDA] [PMID 9582286]; GO_function: GO:0008026 - ATP-dependent helicase activity [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0004386 - helicase activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0000386 - second spliceosomal transesterification activity [Evidence IDA] [PMID 12212850]; GO_function: GO:0000386 - second spliceosomal transesterification activity [Evidence IMP] [PMID 9524130]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0008380 - RNA splicing [Evidence IEA]; GO_process: GO:0000350 - generation of catalytic spliceosome for second transesterification step [Evidence IDA] [PMID 12212850]; GO_process: GO:0000350 - generation of catalytic spliceosome for second transesterification step [Evidence IMP] [PMID 22408182]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0000390 - spliceosomal complex disassembly [Evidence IMP] [PMID 9524130]; DEAH-box ATP-dependent RNA helicase PRP22 1100556 PRP22 30035517 PRP22 Sugiyamaella lignohabitans DEAH-box ATP-dependent RNA helicase PRP22 XP_018734589.1 1098352 D 796027 CDS AWJ20_350 30035529 1101974..1102306 A 1 NC_031672.1 Translation initiation factor eIF1; component of a complex involved in recognition of the initiator codon; modulates translation accuracy at the initiation phase; GO_component: GO:0016282 - eukaryotic 43S preinitiation complex [Evidence IDA] [PMID 12008673]; GO_component: GO:0043614 - multi-eIF complex [Evidence IDA] [PMID 11018020]; GO_component: GO:0043614 - multi-eIF complex [Evidence IDA] [PMID 15838098]; GO_function: GO:0043024 - ribosomal small subunit binding [Evidence IDA] [PMID 17434125]; GO_function: GO:0003743 - translation initiation factor activity [Evidence IEA]; GO_function: GO:0003743 - translation initiation factor activity [Evidence IDA] [PMID 12008673]; GO_function: GO:0031369 - translation initiation factor binding [Evidence IDA,IPI] [PMID 12861028]; GO_function: GO:0031369 - translation initiation factor binding [Evidence IDA,IPI] [PMID 15145951]; GO_function: GO:0031369 - translation initiation factor binding [Evidence IPI] [PMID 22851688]; GO_process: GO:0001731 - formation of translation preinitiation complex [Evidence IDA] [PMID 12008673]; GO_process: GO:0001731 - formation of translation preinitiation complex [Evidence IDA] [PMID 15664195]; GO_process: GO:0001731 - formation of translation preinitiation complex [Evidence IDA] [PMID 17434125]; GO_process: GO:1990145 - maintenance of translational fidelity [Evidence IMP] [PMID 9488467]; GO_process: GO:0006417 - regulation of translation [Evidence IEA]; GO_process: GO:0006412 - translation [Evidence IEA]; GO_process: GO:0006413 - translational initiation [Evidence IEA]; translation initiation factor eIF1 1102306 SUI1 30035529 SUI1 Sugiyamaella lignohabitans translation initiation factor eIF1 XP_018734590.1 1101974 D 796027 CDS AWJ20_351 30035540 complement(1102853..1105813) A 1 NC_031672.1 Lipid-binding ER protein, enriched at nucleus-vacuolar junctions (NVJ); may be involved in sterol metabolism or signaling at the NVJ; contains a synaptotagmin-like-mitochondrial- lipid binding protein (SMP) domain; binds phosphatidylinositols and other lipids in a large-scale study; may interact with ribosomes, based on co-purification experiments; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 14562095]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0071561 - nucleus-vacuole junction [Evidence IDA] [PMID 22250200]; GO_component: GO:0005840 - ribosome [Evidence IDA] [PMID 16702403]; GO_function: GO:0008289 - lipid binding [Evidence IDA] [PMID 22250200]; GO_process: GO:0008150 - biological_process [Evidence ND]; Nvj2p 1105813 NVJ2 30035540 NVJ2 Sugiyamaella lignohabitans Nvj2p XP_018734591.1 1102853 R 796027 CDS AWJ20_353 30035562 complement(1116191..1117870) A 1 NC_031672.1 Plasma membrane regulator of polyamine and carnitine transport; has similarity to transporters but lacks transport activity; may act as a sensor that transduces environmental signals; has a positive or negative regulatory effect on transcription of many transporter genes; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IDA] [PMID 10545096]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 10545096]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0005887 - integral component of plasma membrane [Evidence IDA] [PMID 10545096]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA,IEA]; GO_function: GO:0015171 - amino acid transmembrane transporter activity [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0015203 - polyamine transmembrane transporter activity [Evidence IMP] [PMID 23755272]; GO_process: GO:0003333 - amino acid transmembrane transport [Evidence IEA]; GO_process: GO:0006865 - amino acid transport [Evidence IEA,IEA]; GO_process: GO:1902274 - positive regulation of (R)-carnitine transmembrane transport [Evidence IMP] [PMID 23755272]; GO_process: GO:1902269 - positive regulation of polyamine transmembrane transport [Evidence IMP] [PMID 23755272]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; Agp2p 1117870 AGP2 30035562 AGP2 Sugiyamaella lignohabitans Agp2p XP_018734592.1 1116191 R 796027 CDS AWJ20_354 30035573 1129517..1131691 A 1 NC_031672.1 hypothetical protein required for growth on ethanol; contains a zinc finger region and has homology to human BRAP2, which is a cytoplasmic protein that binds nuclear localization sequences; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0008139 - nuclear localization sequence binding [Evidence IDA] [PMID 9497340]; GO_function: GO:0043130 - ubiquitin binding [Evidence IDA] [PMID 16564012]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0045471 - response to ethanol [Evidence IMP] [PMID 19416103]; Etp1p 1131691 ETP1 30035573 ETP1 Sugiyamaella lignohabitans Etp1p XP_018734593.1 1129517 D 796027 CDS AWJ20_355 30035584 1132699..1133436 A 1 NC_031672.1 5-phospho-ribosyl-1(alpha)-pyrophosphate synthetase; synthesizes PRPP, which is required for nucleotide, histidine, and tryptophan biosynthesis; one of five related enzymes, which are active as heteromultimeric complexes; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000287 - magnesium ion binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0004749 - ribose phosphate diphosphokinase activity [Evidence IEA,IEA]; GO_function: GO:0004749 - ribose phosphate diphosphokinase activity [Evidence IGI] [PMID 15280369]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006015 - 5-phosphoribose 1-diphosphate biosynthetic process [Evidence IEA]; GO_process: GO:0006015 - 5-phosphoribose 1-diphosphate biosynthetic process [Evidence IMP] [PMID 10212224]; GO_process: GO:0006015 - 5-phosphoribose 1-diphosphate biosynthetic process [Evidence IGI] [PMID 15280369]; GO_process: GO:0044249 - cellular biosynthetic process [Evidence IEA]; GO_process: GO:0031505 - fungal-type cell wall organization [Evidence IPI] [PMID 15470112]; GO_process: GO:0009165 - nucleotide biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; GO_process: GO:0008361 - regulation of cell size [Evidence IMP] [PMID 12089449]; GO_process: GO:0009156 - ribonucleoside monophosphate biosynthetic process [Evidence IEA]; ribose phosphate diphosphokinase subunit PRS3 1133436 PRS3 30035584 PRS3 Sugiyamaella lignohabitans ribose phosphate diphosphokinase subunit PRS3 XP_018734594.1 1132699 D 796027 CDS AWJ20_356 30035595 complement(1133631..1134443) A 1 NC_031672.1 uncharacterized protein 1134443 30035595 AWJ20_356 Sugiyamaella lignohabitans uncharacterized protein XP_018734595.1 1133631 R 796027 CDS AWJ20_357 30035606 1135921..1137705 A 1 NC_031672.1 uncharacterized protein 1137705 30035606 AWJ20_357 Sugiyamaella lignohabitans uncharacterized protein XP_018734596.1 1135921 D 796027 CDS AWJ20_358 30035617 complement(1137978..1139324) A 1 NC_031672.1 Alpha-tubulin; associates with beta-tubulin (Tub2p) to form tubulin dimer, which polymerizes to form microtubules; relative distribution to nuclear foci increases upon DNA replication stress; TUB1 has a paralog, TUB3, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005881 - cytoplasmic microtubule [Evidence IC] [PMID 9488492]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA,IEA]; GO_component: GO:0005828 - kinetochore microtubule [Evidence IC] [PMID 9488492]; GO_component: GO:0005874 - microtubule [Evidence IEA,IEA]; GO_component: GO:0005880 - nuclear microtubule [Evidence IC] [PMID 9488492]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_component: GO:0005827 - polar microtubule [Evidence IC] [PMID 9488492]; GO_component: GO:0043234 - protein complex [Evidence IEA]; GO_component: GO:0005816 - spindle pole body [Evidence IDA] [PMID 9585415]; GO_component: GO:0045298 - tubulin complex [Evidence IDA,IPI] [PMID 9488492]; GO_function: GO:0005525 - GTP binding [Evidence IEA,IEA]; GO_function: GO:0003924 - GTPase activity [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0005200 - structural constituent of cytoskeleton [Evidence IEA]; GO_process: GO:0006184 - GTP catabolic process [Evidence IEA]; GO_process: GO:0045143 - homologous chromosome segregation [Evidence IMP] [PMID 16582437]; GO_process: GO:0007017 - microtubule-based process [Evidence IEA]; GO_process: GO:0000070 - mitotic sister chromatid segregation [Evidence IMP] [PMID 16582437]; GO_process: GO:0030473 - nuclear migration along microtubule [Evidence IMP] [PMID 16582437]; GO_process: GO:0051258 - protein polymerization [Evidence IEA]; alpha-tubulin TUB1 1139324 TUB1 30035617 TUB1 Sugiyamaella lignohabitans alpha-tubulin TUB1 XP_018734597.1 1137978 R 796027 CDS AWJ20_359 30035628 complement(1140701..1142104) A 1 NC_031672.1 Mitochondrial aldehyde dehydrogenase; involved in regulation or biosynthesis of electron transport chain components and acetate formation; activated by K+; utilizes NADP+ as the preferred coenzyme; constitutively expressed; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0004029 - aldehyde dehydrogenase (NAD) activity [Evidence IDA] [PMID 9473035]; GO_function: GO:0004030 - aldehyde dehydrogenase [NAD(P)+] activity [Evidence IEA]; GO_function: GO:0004030 - aldehyde dehydrogenase [NAD(P)+] activity [Evidence IDA] [PMID 9473035]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0016620 - oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor [Evidence IEA]; GO_process: GO:0019413 - acetate biosynthetic process [Evidence IMP] [PMID 15256563]; GO_process: GO:0006068 - ethanol catabolic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; aldehyde dehydrogenase (NAD(P)(+)) ALD5 1142104 ALD5 30035628 ALD5 Sugiyamaella lignohabitans aldehyde dehydrogenase (NAD(P)(+)) ALD5 XP_018734598.1 1140701 R 796027 CDS AWJ20_360 30035640 complement(1143860..1144945) A 1 NC_031672.1 NADPH-dependent medium chain alcohol dehydrogenase; has broad substrate specificity; member of the cinnamyl family of alcohol dehydrogenases; may be involved in fusel alcohol synthesis or in aldehyde tolerance; protein abundance increases in response to DNA replication stress; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0008106 - alcohol dehydrogenase (NADP+) activity [Evidence IEA]; GO_function: GO:0008106 - alcohol dehydrogenase (NADP+) activity [Evidence IDA] [PMID 11742541]; GO_function: GO:0033833 - hydroxymethylfurfural reductase (NADH) activity [Evidence IMP] [PMID 16652391]; GO_function: GO:0033845 - hydroxymethylfurfural reductase (NADPH) activity [Evidence IMP] [PMID 16652391]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0006066 - alcohol metabolic process [Evidence IDA] [PMID 11742541]; GO_process: GO:0006081 - cellular aldehyde metabolic process [Evidence IDA] [PMID 11742541]; GO_process: GO:0033859 - furaldehyde metabolic process [Evidence IMP] [PMID 16652391]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; Adh6p 1144945 ADH6 30035640 ADH6 Sugiyamaella lignohabitans Adh6p XP_018734599.1 1143860 R 796027 CDS AWJ20_361 30035651 1147694..1149109 A 1 NC_031672.1 Glucokinase; catalyzes the phosphorylation of glucose at C6 in the first irreversible step of glucose metabolism; one of three glucose phosphorylating enzymes; expression regulated by non-fermentable carbon sources; GLK1 has a paralog, EMI2, that arose from the whole genome duplication; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 14562095]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 16622836]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004340 - glucokinase activity [Evidence IEA]; GO_function: GO:0004340 - glucokinase activity [Evidence IMP] [PMID 6341351]; GO_function: GO:0004340 - glucokinase activity [Evidence IDA] [PMID 8501032]; GO_function: GO:0004396 - hexokinase activity [Evidence IEA]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016773 - phosphotransferase activity, alcohol group as acceptor [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0005975 - carbohydrate metabolic process [Evidence IEA]; GO_process: GO:0046835 - carbohydrate phosphorylation [Evidence IEA]; GO_process: GO:0051156 - glucose 6-phosphate metabolic process [Evidence IEA]; GO_process: GO:0046323 - glucose import [Evidence IGI] [PMID 6300872]; GO_process: GO:0006006 - glucose metabolic process [Evidence IMP] [PMID 6300872]; GO_process: GO:0006096 - glycolytic process [Evidence IEA,IEA]; GO_process: GO:0006096 - glycolytic process [Evidence IDA] [PMID 8501032]; GO_process: GO:0006013 - mannose metabolic process [Evidence IDA] [PMID 237183]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; glucokinase 1149109 GLK1 30035651 GLK1 Sugiyamaella lignohabitans glucokinase XP_018734600.1 1147694 D 796027 CDS AWJ20_362 30035662 complement(1149439..1152048) A 1 NC_031672.1 Homeobox transcriptional repressor; binds to Mcm1p and to early cell cycle boxes (ECBs) in the promoters of cell cycle-regulated genes expressed in M/G1 phase; expression is cell cycle-regulated; potential Cdc28p substrate; relocalizes from nucleus to cytoplasm upon DNA replication stress; YOX1 has a paralog, YHP1, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0000790 - nuclear chromatin [Evidence IDA] [PMID 12464632]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 15282802]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0000977 - RNA polymerase II regulatory region sequence-specific DNA binding [Evidence IDA,IMP] [PMID 12464633]; GO_function: GO:0000977 - RNA polymerase II regulatory region sequence-specific DNA binding [Evidence IDA] [PMID 20385087]; GO_function: GO:0001191 - RNA polymerase II transcription factor binding transcription factor activity involved in negative regulation of transcription [Evidence IPI] [PMID 12464633]; GO_function: GO:0001191 - RNA polymerase II transcription factor binding transcription factor activity involved in negative regulation of transcription [Evidence IMP,IPI] [PMID 20385087]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19111667]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19158363]; GO_function: GO:0003700 - sequence-specific DNA binding transcription factor activity [Evidence IEA]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0071930 - negative regulation of transcription involved in G1/S transition of mitotic cell cycle [Evidence IGI,IMP] [PMID 12464633]; GO_process: GO:0071930 - negative regulation of transcription involved in G1/S transition of mitotic cell cycle [Evidence IMP] [PMID 17314407]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA,IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Yox1p 1152048 YOX1 30035662 YOX1 Sugiyamaella lignohabitans Yox1p XP_018734601.1 1149439 R 796027 CDS AWJ20_363 30035673 1164775..1165140 A 1 NC_031672.1 Plasma membrane protein involved in maintaining membrane organization; involved in maintaining organization during stress conditions; induced by heat shock, oxidative stress, osmostress, stationary phase, glucose depletion, oleate and alcohol; protein abundance increased in response to DNA replication stress and dietary restriction; regulated by the HOG and Ras-Pka pathways; required for dietary restriction-induced lifespan extension; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 20797624]; GO_component: GO:0005768 - endosome [Evidence IDA] [PMID 20797624]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 10675505]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 16622836]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 20797624]; GO_function: GO:0008289 - lipid binding [Evidence IDA] [PMID 20797624]; GO_process: GO:0007155 - cell adhesion [Evidence IDA] [PMID 11816034]; GO_process: GO:0034605 - cellular response to heat [Evidence IMP] [PMID 20797624]; GO_process: GO:0071470 - cellular response to osmotic stress [Evidence IMP] [PMID 20797624]; GO_process: GO:0034599 - cellular response to oxidative stress [Evidence IMP] [PMID 20797624]; GO_process: GO:0007009 - plasma membrane organization [Evidence IMP] [PMID 20797624]; GO_process: GO:0006950 - response to stress [Evidence IEA,IEA]; lipid-binding protein HSP12 1165140 HSP12 30035673 HSP12 Sugiyamaella lignohabitans lipid-binding protein HSP12 XP_018734602.1 1164775 D 796027 CDS AWJ20_364 30035684 1167991..1170957 A 1 NC_031672.1 Transcriptional activator of nitrogen catabolite repression genes; contains a GATA-1-type zinc finger DNA-binding motif; activity and localization regulated by nitrogen limitation and Ure2p; different translational starts produce two major and two minor isoforms that are differentially regulated and localized; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 10799523]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 10799523]; GO_component: GO:0005634 - nucleus [Evidence IPI] [PMID 19380492]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0001077 - RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription [Evidence ISA] [PMID 7568152]; GO_function: GO:0001077 - RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription [Evidence IMP] [PMID 9106207]; GO_function: GO:0001076 - RNA polymerase II transcription factor binding transcription factor activity [Evidence IMP] [PMID 19380492]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19111667]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19158363]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IGI] [PMID 7568152]; GO_function: GO:0003700 - sequence-specific DNA binding transcription factor activity [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0090294 - nitrogen catabolite activation of transcription [Evidence IGI,IMP] [PMID 7568152]; GO_process: GO:0090294 - nitrogen catabolite activation of transcription [Evidence IGI,IMP] [PMID 8622686]; GO_process: GO:0001080 - nitrogen catabolite activation of transcription from RNA polymerase II promoter [Evidence IGI,IMP] [PMID 7568152]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA,IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Gat1p 1170957 GAT1 30035684 GAT1 Sugiyamaella lignohabitans Gat1p XP_018734603.1 1167991 D 796027 CDS AWJ20_365 30035695 complement(1171769..1173454) A 1 NC_031672.1 hypothetical protein; mutant phenotype suggests a potential role in vacuolar function; green fluorescent protein (GFP)-fusion protein localizes to the cell periphery, cytoplasm, bud, and bud neck; relocalizes from bud neck to cytoplasm upon DNA replication stress; SVL3 has a paralog, PAM1, that arose from the whole genome duplication; GO_component: GO:0005938 - cell cortex [Evidence IEA]; GO_component: GO:0005933 - cellular bud [Evidence IEA]; GO_component: GO:0005933 - cellular bud [Evidence IDA] [PMID 14562095]; GO_component: GO:0005935 - cellular bud neck [Evidence IEA]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 14562095]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 22842922]; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 22842922]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0050661 - NADP binding [Evidence IEA]; GO_function: GO:0050662 - coenzyme binding [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor [Evidence IEA]; GO_process: GO:0006897 - endocytosis [Evidence IMP] [PMID 9751732]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; Svl3p 1173454 SVL3 30035695 SVL3 Sugiyamaella lignohabitans Svl3p XP_018734604.1 1171769 R 796027 CDS AWJ20_366 30035706 1178959..1179405 A 1 NC_031672.1 Subunit beta1 of the nascent polypeptide-associated complex (NAC); involved in protein targeting, associated with cytoplasmic ribosomes; enhances DNA binding of the Gal4p activator; homolog of human BTF3b; EGD1 has a paralog, BTT1, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005854 - nascent polypeptide-associated complex [Evidence IDA] [PMID 10219998]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0051082 - unfolded protein binding [Evidence IMP] [PMID 9482879]; GO_process: GO:0051083 - 'de novo' cotranslational protein folding [Evidence IPI] [PMID 10219998]; GO_process: GO:0006620 - posttranslational protein targeting to membrane [Evidence IGI] [PMID 10518932]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Egd1p 1179405 EGD1 30035706 EGD1 Sugiyamaella lignohabitans Egd1p XP_018734605.1 1178959 D 796027 CDS AWJ20_367 30035716 1182000..1183661 A 1 NC_031672.1 Glutamate decarboxylase; converts glutamate into gamma-aminobutyric acid (GABA) during glutamate catabolism; involved in response to oxidative stress; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0016831 - carboxy-lyase activity [Evidence IEA,IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0004351 - glutamate decarboxylase activity [Evidence IEA,IEA]; GO_function: GO:0004351 - glutamate decarboxylase activity [Evidence IMP] [PMID 11031268]; GO_function: GO:0016829 - lyase activity [Evidence IEA,IEA]; GO_function: GO:0030170 - pyridoxal phosphate binding [Evidence IEA]; GO_process: GO:0019752 - carboxylic acid metabolic process [Evidence IEA]; GO_process: GO:0034599 - cellular response to oxidative stress [Evidence IMP] [PMID 11031268]; GO_process: GO:0006538 - glutamate catabolic process [Evidence IMP] [PMID 11031268]; GO_process: GO:0006536 - glutamate metabolic process [Evidence IEA]; glutamate decarboxylase GAD1 1183661 GAD1 30035716 GAD1 Sugiyamaella lignohabitans glutamate decarboxylase GAD1 XP_018734606.1 1182000 D 796027 CDS AWJ20_368 30035727 complement(1194756..1196012) A 1 NC_031672.1 Cyclin; interacts with and phosphorylated by Pho85p cyclin-dependent kinase (Cdk), induced by Gcn4p at level of transcription, specifically required for Gcn4p degradation, may be sensor of cellular protein biosynthetic capacity; GO_component: GO:0000307 - cyclin-dependent protein kinase holoenzyme complex [Evidence IPI] [PMID 16611745]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 19218424]; GO_function: GO:0016538 - cyclin-dependent protein serine/threonine kinase regulator activity [Evidence IDA] [PMID 12101234]; GO_function: GO:0019901 - protein kinase binding [Evidence IEA]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0016242 - negative regulation of macroautophagy [Evidence IMP] [PMID 20417603]; GO_process: GO:0043433 - negative regulation of sequence-specific DNA binding transcription factor activity [Evidence IMP] [PMID 12101234]; GO_process: GO:0000079 - regulation of cyclin-dependent protein serine/threonine kinase activity [Evidence IEA]; GO_process: GO:0031647 - regulation of protein stability [Evidence IMP] [PMID 12101234]; Pcl5p 1196012 PCL5 30035727 PCL5 Sugiyamaella lignohabitans Pcl5p XP_018734607.1 1194756 R 796027 CDS AWJ20_369 30035738 1199861..1201993 A 1 NC_031672.1 Phospholipid-binding protein that interacts with both Ypt7p and Vps33p; may partially counteract the action of Vps33p and vice versa, localizes to the rim of the vacuole as cells approach stationary phase; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 12553664]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0005543 - phospholipid binding [Evidence IDA] [PMID 12553664]; GO_process: GO:0042144 - vacuole fusion, non-autophagic [Evidence IGI,IMP,IPI] [PMID 12553664]; Ivy1p 1201993 IVY1 30035738 IVY1 Sugiyamaella lignohabitans Ivy1p XP_018734608.1 1199861 D 796027 CDS AWJ20_370 30035750 complement(1202211..1203614) A 1 NC_031672.1 tRNA(m(1)G37)methyltransferase; methylates a tRNA base adjacent to the anticodon that has a role in prevention of frameshifting; highly conserved across Archaea, Bacteria, and Eukarya; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 17652090]; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA,IEA]; GO_component: GO:0005759 - mitochondrial matrix [Evidence IDA] [PMID 17652090]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0008168 - methyltransferase activity [Evidence IEA]; GO_function: GO:0052906 - tRNA (guanine(37)-N(1))-methyltransferase activity [Evidence IEA]; GO_function: GO:0016423 - tRNA (guanine) methyltransferase activity [Evidence IGI,IMP,ISS] [PMID 11226173]; GO_function: GO:0009019 - tRNA (guanine-N1-)-methyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA,IEA]; GO_process: GO:0032259 - methylation [Evidence IEA]; GO_process: GO:0030488 - tRNA methylation [Evidence IEA,IEA]; GO_process: GO:0030488 - tRNA methylation [Evidence IGI,IMP,ISS] [PMID 11226173]; GO_process: GO:0008033 - tRNA processing [Evidence IEA]; Trm5p 1203614 TRM5 30035750 TRM5 Sugiyamaella lignohabitans Trm5p XP_018734609.1 1202211 R 796027 CDS AWJ20_371 30035761 1204497..1205531 A 1 NC_031672.1 Protein integral to the mitochondrial membrane; has a conserved methyltransferase motif; multicopy suppressor of respiratory defects caused by OXA1 mutations; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005740 - mitochondrial envelope [Evidence IDA] [PMID 15355998]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity [Evidence ISS] [PMID 9873020]; GO_function: GO:0008168 - methyltransferase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0032259 - methylation [Evidence IEA]; Oms1p 1205531 OMS1 30035761 OMS1 Sugiyamaella lignohabitans Oms1p XP_018734610.1 1204497 D 796027 CDS AWJ20_372 30035772 complement(1205838..1206914) A 1 NC_031672.1 Exosome non-catalytic core component; involved in 3'-5' RNA processing and degradation in both the nucleus and the cytoplasm; predicted to contain RNA binding domains; has similarity to human hRrp4p (EXOSC2); GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0000177 - cytoplasmic exosome (RNase complex) [Evidence IDA] [PMID 10465791]; GO_component: GO:0000177 - cytoplasmic exosome (RNase complex) [Evidence IDA] [PMID 19046973]; GO_component: GO:0000178 - exosome (RNase complex) [Evidence IEA,IEA]; GO_component: GO:0000176 - nuclear exosome (RNase complex) [Evidence IDA] [PMID 10465791]; GO_component: GO:0000176 - nuclear exosome (RNase complex) [Evidence IDA] [PMID 19046973]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA,IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0034475 - U4 snRNA 3'-end processing [Evidence IMP] [PMID 10611222]; GO_process: GO:0000467 - exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 10465791]; GO_process: GO:0000467 - exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 10508172]; GO_process: GO:0000467 - exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 8600032]; GO_process: GO:0000467 - exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 9390555]; GO_process: GO:0070651 - nonfunctional rRNA decay [Evidence IC] [PMID 10465791]; GO_process: GO:0071042 - nuclear polyadenylation-dependent mRNA catabolic process [Evidence IC] [PMID 10465791]; GO_process: GO:0071035 - nuclear polyadenylation-dependent rRNA catabolic process [Evidence IMP] [PMID 10465791]; GO_process: GO:0071038 - nuclear polyadenylation-dependent tRNA catabolic process [Evidence IDA] [PMID 15828860]; GO_process: GO:0071038 - nuclear polyadenylation-dependent tRNA catabolic process [Evidence IDA] [PMID 17643380]; GO_process: GO:0071049 - nuclear retention of pre-mRNA with aberrant 3'-ends at the site of transcription [Evidence IGI] [PMID 11586364]; GO_process: GO:0070478 - nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay [Evidence IC] [PMID 10465791]; GO_process: GO:0034427 - nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5' [Evidence IMP] [PMID 9482746]; GO_process: GO:0070481 - nuclear-transcribed mRNA catabolic process, non-stop decay [Evidence IC] [PMID 10465791]; GO_process: GO:0071051 - polyadenylation-dependent snoRNA 3'-end processing [Evidence IMP] [PMID 10611222]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; Rrp4p 1206914 RRP4 30035772 RRP4 Sugiyamaella lignohabitans Rrp4p XP_018734611.1 1205838 R 796027 CDS AWJ20_373 30035783 1207359..1208426 A 1 NC_031672.1 mRNA-binding protein NPL3 1208426 NPL3 30035783 NPL3 Sugiyamaella lignohabitans mRNA-binding protein NPL3 XP_018734612.1 1207359 D 796027 CDS AWJ20_374 30035794 complement(1210128..1212140) A 1 NC_031672.1 uncharacterized protein 1212140 30035794 AWJ20_374 Sugiyamaella lignohabitans uncharacterized protein XP_018734613.1 1210128 R 796027 CDS AWJ20_375 30035805 complement(1215043..1216905) A 1 NC_031672.1 Subunit of the DSC ubiquitin ligase complex; UBX (ubiquitin regulatory X) domain-containing protein that interacts with Cdc48p; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm in a punctate pattern; ortholog of fission yeast Ucp10; GO_component: GO:0044695 - Dsc E3 ubiquitin ligase complex [Evidence IDA] [PMID 22681890]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; Ubx3p 1216905 UBX3 30035805 UBX3 Sugiyamaella lignohabitans Ubx3p XP_018734614.1 1215043 R 796027 CDS AWJ20_376 30035816 complement(1217195..1220254) A 1 NC_031672.1 DNA helicase PIF1 1220254 PIF1 30035816 PIF1 Sugiyamaella lignohabitans DNA helicase PIF1 XP_018734615.1 1217195 R 796027 CDS AWJ20_377 30035827 1221114..1222193 A 1 NC_031672.1 Nuclear and mitochondrial glycosylase/lyase; specifically excises 7,8-dihydro-8-oxoguanine residues located opposite cytosine or thymine residues in DNA, repairs oxidative damage to mitochondrial DNA, contributes to UVA resistance; GO_component: GO:0031518 - CBF3 complex [Evidence IDA] [PMID 19882662]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 11239005]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11239005]; GO_function: GO:0003906 - DNA-(apurinic or apyrimidinic site) lyase activity [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA,IEA]; GO_function: GO:0003684 - damaged DNA binding [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016798 - hydrolase activity, acting on glycosyl bonds [Evidence IEA]; GO_function: GO:0016829 - lyase activity [Evidence IEA]; GO_function: GO:0008534 - oxidized purine nucleobase lesion DNA N-glycosylase activity [Evidence IEA]; GO_function: GO:0008534 - oxidized purine nucleobase lesion DNA N-glycosylase activity [Evidence IDA] [PMID 8643552]; GO_process: GO:0000737 - DNA catabolic process, endonucleolytic [Evidence IEA,IEA]; GO_process: GO:0006281 - DNA repair [Evidence IEA,IEA]; GO_process: GO:0006281 - DNA repair [Evidence IMP] [PMID 11239005]; GO_process: GO:0006284 - base-excision repair [Evidence IEA]; GO_process: GO:0006285 - base-excision repair, AP site formation [Evidence IDA] [PMID 8643552]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0070987 - error-free translesion synthesis [Evidence IGI] [PMID 19264809]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0006289 - nucleotide-excision repair [Evidence IEA]; GO_process: GO:0007004 - telomere maintenance via telomerase [Evidence IMP] [PMID 19942858]; 8-oxoguanine glycosylase OGG1 1222193 OGG1 30035827 OGG1 Sugiyamaella lignohabitans 8-oxoguanine glycosylase OGG1 XP_018734616.1 1221114 D 796027 CDS AWJ20_378 30035838 1222482..1223486 A 1 NC_031672.1 Subunit of the RES complex; RES complex is required for nuclear pre-mRNA retention and splicing; involved in bud-site selection; diploid mutants display a unipolar budding pattern instead of the wild-type bipolar pattern due to a specific defect in MATa1 pre-mRNA splicing which leads to haploid gene expression in diploids; GO_component: GO:0070274 - RES complex [Evidence IDA] [PMID 15565172]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11452010]; GO_component: GO:0005681 - spliceosomal complex [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008380 - RNA splicing [Evidence IEA]; GO_process: GO:0000282 - cellular bud site selection [Evidence IMP] [PMID 11452010]; GO_process: GO:0006406 - mRNA export from nucleus [Evidence IMP] [PMID 15565172]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0000398 - mRNA splicing, via spliceosome [Evidence IDA] [PMID 15565172]; Bud13p 1223486 BUD13 30035838 BUD13 Sugiyamaella lignohabitans Bud13p XP_018734617.1 1222482 D 796027 CDS AWJ20_379 30035849 complement(1223675..1228129) A 1 NC_031672.1 chromatin-binding exonuclease XRN1 1228129 XRN1 30035849 XRN1 Sugiyamaella lignohabitans chromatin-binding exonuclease XRN1 XP_018734618.1 1223675 R 796027 CDS AWJ20_380 30035861 1230438..1232084 A 1 NC_031672.1 uncharacterized protein 1232084 30035861 AWJ20_380 Sugiyamaella lignohabitans uncharacterized protein XP_018734619.1 1230438 D 796027 CDS AWJ20_381 30035872 1232454..1233995 A 1 NC_031672.1 FG-nucleoporin NUP49 1233995 NUP49 30035872 NUP49 Sugiyamaella lignohabitans FG-nucleoporin NUP49 XP_018734620.1 1232454 D 796027 CDS AWJ20_382 30035883 complement(1234778..1237324) A 1 NC_031672.1 Neutral trehalase, degrades trehalose; required for thermotolerance and may mediate resistance to other cellular stresses; may be phosphorylated by Cdc28p; inhibited by Dcs1p; NTH1 has a paralog, NTH2, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0004555 - alpha,alpha-trehalase activity [Evidence IEA,IEA]; GO_function: GO:0004555 - alpha,alpha-trehalase activity [Evidence TAS] [PMID 9308367]; GO_function: GO:0005509 - calcium ion binding [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016798 - hydrolase activity, acting on glycosyl bonds [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0005993 - trehalose catabolic process [Evidence IEA]; GO_process: GO:0005993 - trehalose catabolic process [Evidence IMP] [PMID 23597844]; GO_process: GO:0005991 - trehalose metabolic process [Evidence IEA]; alpha,alpha-trehalase NTH1 1237324 NTH1 30035883 NTH1 Sugiyamaella lignohabitans alpha,alpha-trehalase NTH1 XP_018734621.1 1234778 R 796027 CDS AWJ20_383 30035894 1244056..1244760 A 1 NC_031672.1 hypothetical protein; GFP-fusion protein is induced in response to the DNA-damaging agent MMS; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0006950 - response to stress [Evidence IEA]; Fmp41p 1244760 FMP41 30035894 FMP41 Sugiyamaella lignohabitans Fmp41p XP_018734622.1 1244056 D 796027 CDS AWJ20_384 30035905 complement(1244931..1246004) A 1 NC_031672.1 Deoxycytidine monophosphate (dCMP) deaminase; involved in dUMP and dTMP biosynthesis; expression is NOT cell cycle regulated; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0003824 - catalytic activity [Evidence IEA,IEA]; GO_function: GO:0004132 - dCMP deaminase activity [Evidence IEA]; GO_function: GO:0004132 - dCMP deaminase activity [Evidence IMP] [PMID 3023902]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA,IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0006231 - dTMP biosynthetic process [Evidence IMP] [PMID 6373725]; GO_process: GO:0006226 - dUMP biosynthetic process [Evidence IMP] [PMID 6373725]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0009165 - nucleotide biosynthetic process [Evidence IEA]; Dcd1p 1246004 DCD1 30035905 DCD1 Sugiyamaella lignohabitans Dcd1p XP_018734623.1 1244931 R 796027 CDS AWJ20_385 30035916 1247067..1249151 A 1 NC_031672.1 uncharacterized protein 1249151 30035916 AWJ20_385 Sugiyamaella lignohabitans uncharacterized protein XP_018734624.1 1247067 D 796027 CDS AWJ20_386 30035927 1250255..1252162 A 1 NC_031672.1 Phosphatidylserine decarboxylase of the mitochondrial inner membrane; converts phosphatidylserine to phosphatidylethanolamine; regulates mitochondrial fusion and morphology by affecting lipid mixing in the mitochondrial membrane and by influencing the ratio of long to short forms of Mgm1p; partly exposed to the mitochondrial intermembrane space; GO_component: GO:0031305 - integral component of mitochondrial inner membrane [Evidence IDA] [PMID 23124206]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0016831 - carboxy-lyase activity [Evidence IEA]; GO_function: GO:0016829 - lyase activity [Evidence IEA]; GO_function: GO:0004609 - phosphatidylserine decarboxylase activity [Evidence IEA,IEA]; GO_function: GO:0004609 - phosphatidylserine decarboxylase activity [Evidence IMP] [PMID 8407984]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0006656 - phosphatidylcholine biosynthetic process [Evidence IDA] [PMID 6427211]; GO_process: GO:0006646 - phosphatidylethanolamine biosynthetic process [Evidence IEA]; GO_process: GO:0008654 - phospholipid biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0010636 - positive regulation of mitochondrial fusion [Evidence IMP] [PMID 23045528]; GO_process: GO:0010954 - positive regulation of protein processing [Evidence IMP] [PMID 23045528]; phosphatidylserine decarboxylase 1 1252162 PSD1 30035927 PSD1 Sugiyamaella lignohabitans phosphatidylserine decarboxylase 1 XP_018734625.1 1250255 D 796027 CDS AWJ20_387 30035938 complement(1252367..1253797) A 1 NC_031672.1 hypothetical protein with 8 putative transmembrane segments; ORF exhibits genomic organization compatible with a translational readthrough-dependent mode of expression; GO_component: GO:0030137 - COPI-coated vesicle [Evidence IDA] [PMID 14562095]; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA,IEA]; GO_component: GO:0030136 - clathrin-coated vesicle [Evidence IDA] [PMID 14562095]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Bsc6p 1253797 BSC6 30035938 BSC6 Sugiyamaella lignohabitans Bsc6p XP_018734626.1 1252367 R 796027 CDS AWJ20_388 30035949 complement(1254736..1257432) A 1 NC_031672.1 Largest subunit of the Anaphase-Promoting Complex/Cyclosome; APC/C is a ubiquitin-protein ligase required for degradation of anaphase inhibitors, including mitotic cyclins, during the metaphase/anaphase transition; component of the platform domain of the APC/C, based on structural analysis; localizes to nuclear foci that become diffuse upon DNA replication stress; GO_component: GO:0005680 - anaphase-promoting complex [Evidence IEA]; GO_component: GO:0005680 - anaphase-promoting complex [Evidence IDA] [PMID 9469814]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_component: GO:0000922 - spindle pole [Evidence IEA]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence IMP] [PMID 16481473]; GO_process: GO:0031145 - anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 16481473]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0008054 - cyclin catabolic process [Evidence IMP] [PMID 8895471]; GO_process: GO:0010458 - exit from mitosis [Evidence IMP] [PMID 8895471]; GO_process: GO:0007091 - metaphase/anaphase transition of mitotic cell cycle [Evidence IMP] [PMID 8895471]; GO_process: GO:0007067 - mitotic nuclear division [Evidence IEA]; GO_process: GO:0016567 - protein ubiquitination [Evidence IEA]; GO_process: GO:0016567 - protein ubiquitination [Evidence IMP] [PMID 16481473]; anaphase promoting complex subunit 1 1257432 APC1 30035949 APC1 Sugiyamaella lignohabitans anaphase promoting complex subunit 1 XP_018734627.1 1254736 R 796027 CDS AWJ20_389 30035960 complement(1257557..1259608) A 1 NC_031672.1 Anaphase-promoting complex subunit 1 1259608 APC1 30035960 APC1 Sugiyamaella lignohabitans Anaphase-promoting complex subunit 1 XP_018734628.1 1257557 R 796027 CDS AWJ20_390 30035972 complement(1259902..1261383) A 1 NC_031672.1 Polyamine oxidase; converts spermine to spermidine, which is required for the essential hypusination modification of translation factor eIF-5A; also involved in pantothenic acid biosynthesis; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_function: GO:0052904 - N1-acetylspermidine:oxygen oxidoreductase (3-acetamidopropanal-forming) activity [Evidence IEA]; GO_function: GO:0052903 - N1-acetylspermine:oxygen oxidoreductase (3-acetamidopropanal-forming) activity [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0046592 - polyamine oxidase activity [Evidence IMP] [PMID 11154694]; GO_function: GO:0046592 - polyamine oxidase activity [Evidence IDA] [PMID 21067138]; GO_function: GO:0052902 - spermidine:oxygen oxidoreductase (3-aminopropanal-forming) activity [Evidence IEA]; GO_function: GO:0052901 - spermine:oxygen oxidoreductase (spermidine-forming) activity [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0015940 - pantothenate biosynthetic process [Evidence IMP] [PMID 11154694]; GO_process: GO:0006598 - polyamine catabolic process [Evidence IGI,IMP] [PMID 12586697]; polyamine oxidase 1261383 FMS1 30035972 FMS1 Sugiyamaella lignohabitans polyamine oxidase XP_018734629.1 1259902 R 796027 CDS AWJ20_391 30035983 1262344..1264959 A 1 NC_031672.1 Uncharacterized protein C2orf16 1264959 30035983 AWJ20_391 Sugiyamaella lignohabitans Uncharacterized protein C2orf16 XP_018734630.1 1262344 D 796027 CDS AWJ20_392 30035994 1265210..1267444 A 1 NC_031672.1 Subunit of the Anaphase-Promoting Complex/Cyclosome (APC/C); which is a ubiquitin-protein ligase required for degradation of anaphase inhibitors, including mitotic cyclins, during the metaphase/anaphase transition; component of the catalytic core of the APC/C; has similarity to cullin Cdc53p; GO_component: GO:0005680 - anaphase-promoting complex [Evidence IDA] [PMID 9469814]; GO_component: GO:0031461 - cullin-RING ubiquitin ligase complex [Evidence IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0031625 - ubiquitin protein ligase binding [Evidence IEA]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence IMP] [PMID 16481473]; GO_process: GO:0031145 - anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 16481473]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0008054 - cyclin catabolic process [Evidence IMP] [PMID 9430641]; GO_process: GO:0010458 - exit from mitosis [Evidence IGI] [PMID 9430641]; GO_process: GO:0007091 - metaphase/anaphase transition of mitotic cell cycle [Evidence IGI] [PMID 9430641]; GO_process: GO:0007067 - mitotic nuclear division [Evidence IEA]; GO_process: GO:0016567 - protein ubiquitination [Evidence IEA]; GO_process: GO:0016567 - protein ubiquitination [Evidence IMP] [PMID 16481473]; GO_process: GO:0006511 - ubiquitin-dependent protein catabolic process [Evidence IEA]; anaphase promoting complex subunit 2 1267444 APC2 30035994 APC2 Sugiyamaella lignohabitans anaphase promoting complex subunit 2 XP_018734631.1 1265210 D 796027 CDS AWJ20_393 30036005 complement(1267683..1269143) A 1 NC_031672.1 WD repeat protein Cdt2 1269143 cdt2 30036005 cdt2 Sugiyamaella lignohabitans WD repeat protein Cdt2 XP_018734632.1 1267683 R 796027 CDS AWJ20_394 30036016 complement(1273170..1274570) A 1 NC_031672.1 Hexaprenyl pyrophosphate synthetase; catalyzes the first step in ubiquinone (coenzyme Q) biosynthesis; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IMP] [PMID 10760477]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0000010 - trans-hexaprenyltranstransferase activity [Evidence IMP] [PMID 9708911]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0008299 - isoprenoid biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0006744 - ubiquinone biosynthetic process [Evidence IEA]; GO_process: GO:0006744 - ubiquinone biosynthetic process [Evidence IMP] [PMID 9708911]; trans-hexaprenyltranstransferase 1274570 COQ1 30036016 COQ1 Sugiyamaella lignohabitans trans-hexaprenyltranstransferase XP_018734633.1 1273170 R 796027 CDS AWJ20_395 30036027 1276175..1277113 A 1 NC_031672.1 Cis-prenyltransferase involved in dolichol synthesis; major enzyme of polyprenol synthesis in both the endoplasmic reticulum (ER) and in lipid droplets; participates in ER protein sorting; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 11442630]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 24868093]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 9858571]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0005811 - lipid particle [Evidence IDA] [PMID 24868093]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0045547 - dehydrodolichyl diphosphate synthase activity [Evidence IDA] [PMID 11442630]; GO_function: GO:0004659 - prenyltransferase activity [Evidence IDA] [PMID 17345630]; GO_function: GO:0004659 - prenyltransferase activity [Evidence IDA] [PMID 9858571]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016765 - transferase activity, transferring alkyl or aryl (other than methyl) groups [Evidence IEA]; GO_process: GO:0006888 - ER to Golgi vesicle-mediated transport [Evidence IMP] [PMID 12911815]; GO_process: GO:0019408 - dolichol biosynthetic process [Evidence IDA] [PMID 10217761]; GO_process: GO:0006486 - protein glycosylation [Evidence IEA]; GO_process: GO:0006486 - protein glycosylation [Evidence IDA,IMP] [PMID 9858571]; Rer2p 1277113 RER2 30036027 RER2 Sugiyamaella lignohabitans Rer2p XP_018734634.1 1276175 D 796027 CDS AWJ20_396 30036038 complement(1276384..1276836) A 1 NC_031672.1 uncharacterized protein 1276836 30036038 AWJ20_396 Sugiyamaella lignohabitans uncharacterized protein XP_018734635.1 1276384 R 796027 CDS AWJ20_397 30036049 complement(1277376..1277885) A 1 NC_031672.1 Ribosomal 60S subunit protein L11B; expressed at half the level of Rpl11Ap; involved in ribosomal assembly; depletion causes degradation of 60S proteins and RNA; homologous to mammalian ribosomal protein L11 and bacterial L5; RPL11B has a paralog, RPL11A, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0022625 - cytosolic large ribosomal subunit [Evidence IDA] [PMID 11983894]; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA,IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0019843 - rRNA binding [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IC] [PMID 11983894]; GO_process: GO:0002181 - cytoplasmic translation [Evidence IC] [PMID 11983894]; GO_process: GO:0000027 - ribosomal large subunit assembly [Evidence IMP] [PMID 2277060]; GO_process: GO:0006412 - translation [Evidence IEA]; ribosomal 60S subunit protein L11B 1277885 RPL11B 30036049 RPL11B Sugiyamaella lignohabitans ribosomal 60S subunit protein L11B XP_018734636.1 1277376 R 796027 CDS AWJ20_398 30036060 complement(1279043..1279279) A 1 NC_031672.1 Ran GTPase binding protein; involved in nuclear protein import and RNA export, ubiquitin-mediated protein degradation during the cell cycle; shuttles between the nucleus and cytoplasm; is essential; homolog of human RanBP1; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 10825193]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 10825193]; GO_function: GO:0005096 - GTPase activator activity [Evidence IEA]; GO_function: GO:0008536 - Ran GTPase binding [Evidence IDA] [PMID 7836422]; GO_process: GO:0000082 - G1/S transition of mitotic cell cycle [Evidence IMP] [PMID 10991951]; GO_process: GO:0006405 - RNA export from nucleus [Evidence IMP] [PMID 7489726]; GO_process: GO:0046907 - intracellular transport [Evidence IEA]; GO_process: GO:0043547 - positive regulation of GTPase activity [Evidence IEA]; GO_process: GO:0006606 - protein import into nucleus [Evidence IMP] [PMID 7489726]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0006511 - ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 10991951]; Yrb1p 1279279 YRB1 30036060 YRB1 Sugiyamaella lignohabitans Yrb1p XP_018734637.1 1279043 R 796027 CDS AWJ20_399 30036071 complement(1279657..1280034) A 1 NC_031672.1 Ran GTPase binding protein; involved in nuclear protein import and RNA export, ubiquitin-mediated protein degradation during the cell cycle; shuttles between the nucleus and cytoplasm; is essential; homolog of human RanBP1; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 10825193]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 10825193]; GO_function: GO:0005096 - GTPase activator activity [Evidence IEA]; GO_function: GO:0008536 - Ran GTPase binding [Evidence IDA] [PMID 7836422]; GO_process: GO:0000082 - G1/S transition of mitotic cell cycle [Evidence IMP] [PMID 10991951]; GO_process: GO:0006405 - RNA export from nucleus [Evidence IMP] [PMID 7489726]; GO_process: GO:0046907 - intracellular transport [Evidence IEA]; GO_process: GO:0043547 - positive regulation of GTPase activity [Evidence IEA]; GO_process: GO:0006606 - protein import into nucleus [Evidence IMP] [PMID 7489726]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0006511 - ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 10991951]; Yrb1p 1280034 YRB1 30036071 YRB1 Sugiyamaella lignohabitans Yrb1p XP_018734638.1 1279657 R 796027 CDS AWJ20_400 30036084 1281702..1282220 A 1 NC_031672.1 Beta 5 subunit of the 20S proteasome; responsible for the chymotryptic activity of the proteasome; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IC] [PMID 9087403]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IC] [PMID 9087403]; GO_component: GO:0000502 - proteasome complex [Evidence IEA]; GO_component: GO:0005839 - proteasome core complex [Evidence IEA]; GO_component: GO:0019774 - proteasome core complex, beta-subunit complex [Evidence IDA] [PMID 9087403]; GO_component: GO:0034515 - proteasome storage granule [Evidence IC] [PMID 9087403]; GO_function: GO:0004175 - endopeptidase activity [Evidence IEA]; GO_function: GO:0004175 - endopeptidase activity [Evidence IMP] [PMID 8808631]; GO_function: GO:0004175 - endopeptidase activity [Evidence IMP] [PMID 9312134]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_function: GO:0004298 - threonine-type endopeptidase activity [Evidence IEA,IEA]; GO_process: GO:0010499 - proteasomal ubiquitin-independent protein catabolic process [Evidence IDA] [PMID 19162040]; GO_process: GO:0080129 - proteasome core complex assembly [Evidence IMP] [PMID 8808631]; GO_process: GO:0043161 - proteasome-mediated ubiquitin-dependent protein catabolic process [Evidence IDA] [PMID 11545745]; GO_process: GO:0043161 - proteasome-mediated ubiquitin-dependent protein catabolic process [Evidence IDA] [PMID 19029916]; GO_process: GO:0006508 - proteolysis [Evidence IEA]; GO_process: GO:0051603 - proteolysis involved in cellular protein catabolic process [Evidence IEA]; proteasome core particle subunit beta 5 1282220 PRE2 30036084 PRE2 Sugiyamaella lignohabitans proteasome core particle subunit beta 5 XP_018734639.1 1281702 D 796027 CDS AWJ20_401 30036095 complement(1282518..1284965) A 1 NC_031672.1 Regulator of ribosomal protein (RP) transcription; has forkhead associated domain that binds phosphorylated proteins; recruits coactivator Ifh1p or corepressor Crf1p to RP gene promoters; also has forkhead DNA-binding domain though in vitro DNA binding assays give inconsistent results; computational analyses suggest it binds DNA directly at highly active RP genes and indirectly through Rap1p motifs at others; suppresses RNA pol III and splicing factor prp4 mutants; GO_component: GO:0032545 - CURI complex [Evidence IDA] [PMID 17452446]; GO_component: GO:0000790 - nuclear chromatin [Evidence IDA] [PMID 15620355]; GO_component: GO:0000790 - nuclear chromatin [Evidence IDA] [PMID 15692568]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 15466158]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 15466158]; GO_component: GO:0005667 - transcription factor complex [Evidence IBA]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0003705 - RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity [Evidence IBA]; GO_function: GO:0001225 - RNA polymerase II transcription coactivator binding [Evidence IPI] [PMID 15620355]; GO_function: GO:0001226 - RNA polymerase II transcription corepressor binding [Evidence IPI] [PMID 15620355]; GO_function: GO:0003690 - double-stranded DNA binding [Evidence IBA]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19111667]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19158363]; GO_function: GO:0003700 - sequence-specific DNA binding transcription factor activity [Evidence IEA]; GO_process: GO:0010688 - negative regulation of ribosomal protein gene transcription from RNA polymerase II promoter [Evidence IMP] [PMID 15620355]; GO_process: GO:0010688 - negative regulation of ribosomal protein gene transcription from RNA polymerase II promoter [Evidence IGI] [PMID 7785326]; GO_process: GO:0060963 - positive regulation of ribosomal protein gene transcription from RNA polymerase II promoter [Evidence IGI,IMP] [PMID 15616569]; GO_process: GO:0060963 - positive regulation of ribosomal protein gene transcription from RNA polymerase II promoter [Evidence IMP] [PMID 15620355]; GO_process: GO:0051090 - regulation of sequence-specific DNA binding transcription factor activity [Evidence IBA]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA,IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Fhl1p 1284965 FHL1 30036095 FHL1 Sugiyamaella lignohabitans Fhl1p XP_018734640.1 1282518 R 796027 CDS AWJ20_402 30036106 complement(1285344..1286306) A 1 NC_031672.1 Regulator of ribosomal protein (RP) transcription; has forkhead associated domain that binds phosphorylated proteins; recruits coactivator Ifh1p or corepressor Crf1p to RP gene promoters; also has forkhead DNA-binding domain though in vitro DNA binding assays give inconsistent results; computational analyses suggest it binds DNA directly at highly active RP genes and indirectly through Rap1p motifs at others; suppresses RNA pol III and splicing factor prp4 mutants; GO_component: GO:0032545 - CURI complex [Evidence IDA] [PMID 17452446]; GO_component: GO:0000790 - nuclear chromatin [Evidence IDA] [PMID 15620355]; GO_component: GO:0000790 - nuclear chromatin [Evidence IDA] [PMID 15692568]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 15466158]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 15466158]; GO_component: GO:0005667 - transcription factor complex [Evidence IBA]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0003705 - RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity [Evidence IBA]; GO_function: GO:0001225 - RNA polymerase II transcription coactivator binding [Evidence IPI] [PMID 15620355]; GO_function: GO:0001226 - RNA polymerase II transcription corepressor binding [Evidence IPI] [PMID 15620355]; GO_function: GO:0003690 - double-stranded DNA binding [Evidence IBA]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19111667]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19158363]; GO_function: GO:0003700 - sequence-specific DNA binding transcription factor activity [Evidence IEA]; GO_process: GO:0010688 - negative regulation of ribosomal protein gene transcription from RNA polymerase II promoter [Evidence IMP] [PMID 15620355]; GO_process: GO:0010688 - negative regulation of ribosomal protein gene transcription from RNA polymerase II promoter [Evidence IGI] [PMID 7785326]; GO_process: GO:0060963 - positive regulation of ribosomal protein gene transcription from RNA polymerase II promoter [Evidence IGI,IMP] [PMID 15616569]; GO_process: GO:0060963 - positive regulation of ribosomal protein gene transcription from RNA polymerase II promoter [Evidence IMP] [PMID 15620355]; GO_process: GO:0051090 - regulation of sequence-specific DNA binding transcription factor activity [Evidence IBA]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA,IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Fhl1p 1286306 FHL1 30036106 FHL1 Sugiyamaella lignohabitans Fhl1p XP_018734641.1 1285344 R 796027 CDS AWJ20_403 30036117 complement(1287296..1288858) A 1 NC_031672.1 protein kinase PKH3 1288858 PKH3 30036117 PKH3 Sugiyamaella lignohabitans protein kinase PKH3 XP_018734642.1 1287296 R 796027 CDS AWJ20_404 30036128 complement(1292097..1293983) A 1 NC_031672.1 Endochitinase; required for cell separation after mitosis; transcriptional activation during the G1 phase of the cell cycle is mediated by transcription factor Ace2p; GO_component: GO:0005618 - cell wall [Evidence IEA,IEA]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 11747810]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 11914276]; GO_component: GO:0005576 - extracellular region [Evidence IEA,IEA]; GO_component: GO:0005576 - extracellular region [Evidence IDA] [PMID 19129178]; GO_component: GO:0005576 - extracellular region [Evidence IDA] [PMID 1918080]; GO_component: GO:0009277 - fungal-type cell wall [Evidence IDA] [PMID 11747810]; GO_component: GO:0009277 - fungal-type cell wall [Evidence IDA] [PMID 1918080]; GO_component: GO:0005635 - nuclear envelope [Evidence IDA] [PMID 11914276]; GO_function: GO:0008061 - chitin binding [Evidence IEA]; GO_function: GO:0004568 - chitinase activity [Evidence IEA,IEA]; GO_function: GO:0008843 - endochitinase activity [Evidence IDA] [PMID 6799506]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016798 - hydrolase activity, acting on glycosyl bonds [Evidence IEA]; GO_function: GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]; GO_process: GO:0005975 - carbohydrate metabolic process [Evidence IEA,IEA]; GO_process: GO:0006032 - chitin catabolic process [Evidence IEA,IEA]; GO_process: GO:0006032 - chitin catabolic process [Evidence IC] [PMID 3033651]; GO_process: GO:0007109 - cytokinesis, completion of separation [Evidence IMP] [PMID 1918080]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0000272 - polysaccharide catabolic process [Evidence IEA]; Cts1p 1293983 CTS1 30036128 CTS1 Sugiyamaella lignohabitans Cts1p XP_018734643.1 1292097 R 796027 CDS AWJ20_405 30036139 complement(1295683..1296858) A 1 NC_031672.1 uncharacterized protein 1296858 30036139 AWJ20_405 Sugiyamaella lignohabitans uncharacterized protein XP_018734644.1 1295683 R 796027 CDS AWJ20_406 30036150 complement(1298203..1301328) A 1 NC_031672.1 Essential 121 kDa subunit of the exocyst complex; the exocyst mediates polarized targeting and tethering of post-Golgi secretory vesicles to active sites of exocytosis at the plasma membrane prior to SNARE-mediated fusion; involved in ER and Golgi inheritance in small buds; relocalizes away from bud neck upon DNA replication stress; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 12960429]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 22842922]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 9491896]; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 12960429]; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 17717527]; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 22842922]; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 7615633]; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 9491896]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0000145 - exocyst [Evidence IEA]; GO_component: GO:0000145 - exocyst [Evidence IDA] [PMID 1512289]; GO_component: GO:0000145 - exocyst [Evidence IDA] [PMID 7615633]; GO_component: GO:0000145 - exocyst [Evidence IDA] [PMID 8978675]; GO_component: GO:0000131 - incipient cellular bud site [Evidence IDA] [PMID 9491896]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 19053807]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005628 - prospore membrane [Evidence IDA] [PMID 24390141]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0048313 - Golgi inheritance [Evidence IMP] [PMID 15596717]; GO_process: GO:0006893 - Golgi to plasma membrane transport [Evidence IGI,IMP] [PMID 7026045]; GO_process: GO:0048309 - endoplasmic reticulum inheritance [Evidence IMP] [PMID 15596717]; GO_process: GO:0006887 - exocytosis [Evidence IEA]; GO_process: GO:0006887 - exocytosis [Evidence IMP] [PMID 6996832]; GO_process: GO:0015031 - protein transport [Evidence IEA,IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0006904 - vesicle docking involved in exocytosis [Evidence IEA]; GO_process: GO:0090522 - vesicle tethering involved in exocytosis [Evidence IC] [PMID 8978675]; Sec8p 1301328 SEC8 30036150 SEC8 Sugiyamaella lignohabitans Sec8p XP_018734645.1 1298203 R 796027 CDS AWJ20_407 30036161 complement(1302101..1306153) A 1 NC_031672.1 ubiquitin-binding serine/threonine protein kinase VPS15 1306153 VPS15 30036161 VPS15 Sugiyamaella lignohabitans ubiquitin-binding serine/threonine protein kinase VPS15 XP_018734646.1 1302101 R 796027 CDS AWJ20_408 30036172 1311922..1312146 A 1 NC_031672.1 top hit is XP_006683298.1 originated in Batrachochytrium dendrobatidis JAM81; GTP-binding protein 1312146 30036172 AWJ20_408 Sugiyamaella lignohabitans GTP-binding protein XP_018734647.1 1311922 D 796027 CDS AWJ20_409 30036183 join(1314763..1316065,1316980..1317332) A 1 NC_031672.1 uncharacterized protein 1317332 30036183 AWJ20_409 Sugiyamaella lignohabitans uncharacterized protein XP_018734648.1 1314763 D 796027 CDS AWJ20_410 30036195 complement(1316552..1318852) A 1 NC_031672.1 stress-responsive transcriptional activator MSN4 1318852 MSN4 30036195 MSN4 Sugiyamaella lignohabitans stress-responsive transcriptional activator MSN4 XP_018734649.1 1316552 R 796027 CDS AWJ20_411 30036206 complement(1327957..1328658) A 1 NC_031672.1 Mitochondrial malate dehydrogenase; catalyzes interconversion of malate and oxaloacetate; involved in the tricarboxylic acid (TCA) cycle; phosphorylated; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA]; GO_component: GO:0005759 - mitochondrial matrix [Evidence IDA] [PMID 9774331]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IMP] [PMID 10777592]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 11502169]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IPI] [PMID 16962558]; GO_function: GO:0030060 - L-malate dehydrogenase activity [Evidence IEA,IEA]; GO_function: GO:0030060 - L-malate dehydrogenase activity [Evidence IMP] [PMID 10777592]; GO_function: GO:0030060 - L-malate dehydrogenase activity [Evidence IDA] [PMID 1898005]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 21124907]; GO_function: GO:0016615 - malate dehydrogenase activity [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor [Evidence IEA]; GO_process: GO:0009060 - aerobic respiration [Evidence IMP] [PMID 3312168]; GO_process: GO:0005975 - carbohydrate metabolic process [Evidence IEA]; GO_process: GO:0044262 - cellular carbohydrate metabolic process [Evidence IEA]; GO_process: GO:0001300 - chronological cell aging [Evidence IMP] [PMID 18381895]; GO_process: GO:0006108 - malate metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0001302 - replicative cell aging [Evidence IMP] [PMID 18381895]; GO_process: GO:0006099 - tricarboxylic acid cycle [Evidence IEA]; GO_process: GO:0006099 - tricarboxylic acid cycle [Evidence IMP] [PMID 3312168]; malate dehydrogenase MDH1 1328658 MDH1 30036206 MDH1 Sugiyamaella lignohabitans malate dehydrogenase MDH1 XP_018734650.1 1327957 R 796027 CDS AWJ20_412 30036217 complement(1330235..1331950) A 1 NC_031672.1 hypothetical protein; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies; null mutant displays elevated frequency of mitochondrial genome loss; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0016772 - transferase activity, transferring phosphorus-containing groups [Evidence IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; Aim9p 1331950 AIM9 30036217 AIM9 Sugiyamaella lignohabitans Aim9p XP_018734651.1 1330235 R 796027 CDS AWJ20_413 30036228 1333813..1336509 A 1 NC_031672.1 Peripheral membrane protein of peroxisomes; involved in peroxisomal inheritance; recruitment to peroxisomes is mediated by interaction with Pex3p at the peroxisomal membrane; GO_component: GO:0005780 - extrinsic component of intraperoxisomal membrane [Evidence IEA]; GO_component: GO:0005780 - extrinsic component of intraperoxisomal membrane [Evidence IDA] [PMID 15928207]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005778 - peroxisomal membrane [Evidence IEA]; GO_component: GO:0005777 - peroxisome [Evidence IEA]; GO_component: GO:0005777 - peroxisome [Evidence IDA] [PMID 14562095]; GO_component: GO:0005777 - peroxisome [Evidence IDA] [PMID 23900285]; GO_function: GO:0030674 - protein binding, bridging [Evidence IMP] [PMID 23900285]; GO_process: GO:0045033 - peroxisome inheritance [Evidence IEA]; GO_process: GO:0045033 - peroxisome inheritance [Evidence IMP,IPI] [PMID 15928207]; Inp1p 1336509 INP1 30036228 INP1 Sugiyamaella lignohabitans Inp1p XP_018734652.1 1333813 D 796027 CDS AWJ20_414 30036239 complement(1337852..1338958) A 1 NC_031672.1 Component of the TOM (translocase of outer membrane) complex; responsible for recognition and initial import steps for all mitochondrially directed proteins; constitutes the core element of the protein conducting pore; pre-Tom40p is phosphorylated by PKA, which impairs its import into mitochondria under non-respiratory conditions; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IEA,IEA,IEA]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IDA] [PMID 16407407]; GO_component: GO:0005742 - mitochondrial outer membrane translocase complex [Evidence IDA] [PMID 9774667]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 11914276]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0046930 - pore complex [Evidence IEA]; GO_function: GO:0015288 - porin activity [Evidence IEA]; GO_function: GO:0015266 - protein channel activity [Evidence IEA]; GO_function: GO:0015266 - protein channel activity [Evidence IDA] [PMID 9774109]; GO_process: GO:0006811 - ion transport [Evidence IEA]; GO_process: GO:0030150 - protein import into mitochondrial matrix [Evidence IEA]; GO_process: GO:0030150 - protein import into mitochondrial matrix [Evidence IMP] [PMID 15590639]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Tom40p 1338958 TOM40 30036239 TOM40 Sugiyamaella lignohabitans Tom40p XP_018734653.1 1337852 R 796027 CDS AWJ20_415 30036250 complement(1339430..1340887) A 1 NC_031672.1 uncharacterized protein 1340887 30036250 AWJ20_415 Sugiyamaella lignohabitans uncharacterized protein XP_018734654.1 1339430 R 796027 CDS AWJ20_416 30036261 complement(1342880..1343473) A 1 NC_031672.1 uncharacterized protein 1343473 30036261 AWJ20_416 Sugiyamaella lignohabitans uncharacterized protein XP_018734655.1 1342880 R 796027 CDS AWJ20_417 30036272 1344227..1346752 A 1 NC_031672.1 Subunit a of the vacuolar-ATPase V0 domain; one of two isoforms (Stv1p and Vph1p); Stv1p is located in V-ATPase complexes of the Golgi and endosomes while Vph1p is located in V-ATPase complexes of the vacuole; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0005794 - Golgi apparatus [Evidence IDA] [PMID 11592965]; GO_component: GO:0005794 - Golgi apparatus [Evidence IDA] [PMID 11948198]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA]; GO_component: GO:0005768 - endosome [Evidence IEA]; GO_component: GO:0010008 - endosome membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0005770 - late endosome [Evidence IDA] [PMID 11592965]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0033179 - proton-transporting V-type ATPase, V0 domain [Evidence IEA]; GO_component: GO:0000220 - vacuolar proton-transporting V-type ATPase, V0 domain [Evidence IEA]; GO_component: GO:0000220 - vacuolar proton-transporting V-type ATPase, V0 domain [Evidence IDA,ISS] [PMID 7514599]; GO_function: GO:0015078 - hydrogen ion transmembrane transporter activity [Evidence IEA]; GO_function: GO:0046961 - proton-transporting ATPase activity, rotational mechanism [Evidence IGI,ISS] [PMID 7514599]; GO_process: GO:0015991 - ATP hydrolysis coupled proton transport [Evidence IEA]; GO_process: GO:0006811 - ion transport [Evidence IEA]; GO_process: GO:0015992 - proton transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0007035 - vacuolar acidification [Evidence IEP,IGI,IMP,ISS] [PMID 11278748]; GO_process: GO:0007035 - vacuolar acidification [Evidence IGI] [PMID 7514599]; H(+)-transporting V0 sector ATPase subunit a 1346752 VPH1 30036272 VPH1 Sugiyamaella lignohabitans H(+)-transporting V0 sector ATPase subunit a XP_018734656.1 1344227 D 796027 CDS AWJ20_418 30036283 complement(1347956..1349317) A 1 NC_031672.1 Homocitrate synthase isozyme; catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, which is the first step in the lysine biosynthesis pathway; LYS21 has a paralog, LYS20, that arose from the whole genome duplication; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11914276]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9099739]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0004410 - homocitrate synthase activity [Evidence IEA,IEA]; GO_function: GO:0004410 - homocitrate synthase activity [Evidence ISS] [PMID 9099739]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0046912 - transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer [Evidence IEA]; GO_process: GO:0019752 - carboxylic acid metabolic process [Evidence IEA]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0009085 - lysine biosynthetic process [Evidence IEA]; GO_process: GO:0019878 - lysine biosynthetic process via aminoadipic acid [Evidence IEA,IEA]; GO_process: GO:0019878 - lysine biosynthetic process via aminoadipic acid [Evidence IGI,IMP] [PMID 18524920]; homocitrate synthase LYS21 1349317 LYS21 30036283 LYS21 Sugiyamaella lignohabitans homocitrate synthase LYS21 XP_018734657.1 1347956 R 796027 CDS AWJ20_419 30036294 1352683..1358226 A 1 NC_031672.1 Essential protein involved in regulation of transcription; removes Spt15p (TBP) from DNA via its C-terminal ATPase activity; may have a role in ensuring that soluble TBP is available to bind TATA-less promoters; forms a complex with TBP that binds TATA DNA with high affinity but with altered specificity; the Mot1p-Spt15p-DNA ternary complex contains unbent DNA; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0000228 - nuclear chromosome [Evidence IDA] [PMID 11880621]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 21976730]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016887 - ATPase activity [Evidence IDA] [PMID 9234740]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0003677 - DNA binding [Evidence IDA] [PMID 22298788]; GO_function: GO:0017025 - TBP-class protein binding [Evidence IPI] [PMID 8083216]; GO_function: GO:0004386 - helicase activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0045892 - negative regulation of transcription, DNA-templated [Evidence IMP] [PMID 24459134]; GO_process: GO:0006364 - rRNA processing [Evidence IMP] [PMID 17296733]; GO_process: GO:0045898 - regulation of RNA polymerase II transcriptional preinitiation complex assembly [Evidence IMP] [PMID 15861138]; GO_process: GO:0045898 - regulation of RNA polymerase II transcriptional preinitiation complex assembly [Evidence IMP] [PMID 21976730]; GO_process: GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence IDA] [PMID 9234740]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0042790 - transcription of nuclear large rRNA transcript from RNA polymerase I promoter [Evidence IDA,IMP] [PMID 17296733]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Mot1p 1358226 MOT1 30036294 MOT1 Sugiyamaella lignohabitans Mot1p XP_018734658.1 1352683 D 796027 CDS AWJ20_420 30036306 complement(1358664..1359671) A 1 NC_031672.1 Component of the cleavage and polyadenylation factor I (CF I); CF 1, composed of the CF 1A complex (Rna14p, Rna15p, Clp1p, Pcf11p) and Hrp1, is involved in cleavage and polyadenylation of mRNA 3' ends; involved in both the endonucleolyitc cleavage and polyadenylation steps of mRNA 3'-end maturation; GO_component: GO:0005849 - mRNA cleavage factor complex [Evidence IEA,IEA]; GO_component: GO:0005849 - mRNA cleavage factor complex [Evidence IPI] [PMID 11344258]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0003723 - RNA binding [Evidence IDA] [PMID 11344258]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0031124 - mRNA 3'-end processing [Evidence IEA,IEA]; GO_process: GO:0031124 - mRNA 3'-end processing [Evidence IDA] [PMID 11344258]; GO_process: GO:0006379 - mRNA cleavage [Evidence IDA] [PMID 11344258]; GO_process: GO:0006378 - mRNA polyadenylation [Evidence IDA] [PMID 11344258]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; Clp1p 1359671 CLP1 30036306 CLP1 Sugiyamaella lignohabitans Clp1p XP_018734659.1 1358664 R 796027 CDS AWJ20_421 30036317 1360356..1360817 A 1 NC_031672.1 uncharacterized protein 1360817 30036317 AWJ20_421 Sugiyamaella lignohabitans uncharacterized protein XP_018734660.1 1360356 D 796027 CDS AWJ20_423 30036339 complement(1361869..1363554) A 1 NC_031672.1 hypothetical protein involved in calcium homeostasis; localizes to the cis- and medial-Golgi apparatus; GFP-fusion protein localizes to the vacuole; TMEM165, a human gene which causes Congenital Disorders of Glycosylation is orthologous and functionally complements the null allele; expression pattern and physical interactions suggest a possible role in ribosome biogenesis; expression reduced in a gcr1 null mutant; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0005797 - Golgi medial cisterna [Evidence IDA] [PMID 23569283]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA]; GO_component: GO:0005801 - cis-Golgi network [Evidence IDA] [PMID 23569283]; GO_component: GO:0000324 - fungal-type vacuole [Evidence IDA] [PMID 14562095]; GO_component: GO:0000324 - fungal-type vacuole [Evidence IDA] [PMID 23708375]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 22842922]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006874 - cellular calcium ion homeostasis [Evidence IGI,IMP] [PMID 23569283]; Gdt1p 1363554 GDT1 30036339 GDT1 Sugiyamaella lignohabitans Gdt1p XP_018734661.1 1361869 R 796027 CDS AWJ20_424 30036350 1365057..1366328 A 1 NC_031672.1 SET domain hypothetical protein; deletion heterozygote is sensitive to compounds that target ergosterol biosynthesis, may be involved in compound availability; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0008168 - methyltransferase activity [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0032259 - methylation [Evidence IEA]; Set6p 1366328 SET6 30036350 SET6 Sugiyamaella lignohabitans Set6p XP_018734662.1 1365057 D 796027 CDS AWJ20_425 30036361 complement(1368542..1368889) A 1 NC_031672.1 uncharacterized protein 1368889 30036361 AWJ20_425 Sugiyamaella lignohabitans uncharacterized protein XP_018734663.1 1368542 R 796027 CDS AWJ20_426 30036372 1374074..1374424 A 1 NC_031672.1 Catalytic subunit of DNA polymerase zeta; involved in translesion synthesis during post-replication repair; required for mutagenesis induced by DNA damage; involved in double-strand break repair; forms a complex with Rev7p, Pol31p and Pol32p; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16452144]; GO_component: GO:0000790 - nuclear chromatin [Evidence IPI] [PMID 16546083]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0016035 - zeta DNA polymerase complex [Evidence IDA] [PMID 8658138]; GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA,IEA,IEA]; GO_function: GO:0003887 - DNA-directed DNA polymerase activity [Evidence IDA] [PMID 8658138]; GO_function: GO:0051536 - iron-sulfur cluster binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016779 - nucleotidyltransferase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006281 - DNA repair [Evidence IEA]; GO_process: GO:0006260 - DNA replication [Evidence IEA,IEA]; GO_process: GO:0006261 - DNA-dependent DNA replication [Evidence IEA,IEA,IEA]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0070987 - error-free translesion synthesis [Evidence IDA] [PMID 12514101]; GO_process: GO:0042276 - error-prone translesion synthesis [Evidence IDA] [PMID 11313481]; GO_process: GO:0042276 - error-prone translesion synthesis [Evidence IDA] [PMID 17248528]; GO_process: GO:0042276 - error-prone translesion synthesis [Evidence IGI] [PMID 9765213]; GO_process: GO:0006139 - nucleobase-containing compound metabolic process [Evidence IEA]; Rev3p 1374424 REV3 30036372 REV3 Sugiyamaella lignohabitans Rev3p XP_018734664.1 1374074 D 796027 CDS AWJ20_427 30036383 1374535..1378698 A 1 NC_031672.1 Catalytic subunit of DNA polymerase zeta; involved in translesion synthesis during post-replication repair; required for mutagenesis induced by DNA damage; involved in double-strand break repair; forms a complex with Rev7p, Pol31p and Pol32p; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16452144]; GO_component: GO:0000790 - nuclear chromatin [Evidence IPI] [PMID 16546083]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0016035 - zeta DNA polymerase complex [Evidence IDA] [PMID 8658138]; GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA,IEA,IEA]; GO_function: GO:0003887 - DNA-directed DNA polymerase activity [Evidence IDA] [PMID 8658138]; GO_function: GO:0051536 - iron-sulfur cluster binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016779 - nucleotidyltransferase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006281 - DNA repair [Evidence IEA]; GO_process: GO:0006260 - DNA replication [Evidence IEA,IEA]; GO_process: GO:0006261 - DNA-dependent DNA replication [Evidence IEA,IEA,IEA]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0070987 - error-free translesion synthesis [Evidence IDA] [PMID 12514101]; GO_process: GO:0042276 - error-prone translesion synthesis [Evidence IDA] [PMID 11313481]; GO_process: GO:0042276 - error-prone translesion synthesis [Evidence IDA] [PMID 17248528]; GO_process: GO:0042276 - error-prone translesion synthesis [Evidence IGI] [PMID 9765213]; GO_process: GO:0006139 - nucleobase-containing compound metabolic process [Evidence IEA]; Rev3p 1378698 REV3 30036383 REV3 Sugiyamaella lignohabitans Rev3p XP_018734665.1 1374535 D 796027 CDS AWJ20_428 30036394 complement(1378816..1380525) A 1 NC_031672.1 Protein involved in DNA mismatch repair and meiotic recombination; involved in crossing-over during meiotic recombination; forms a complex with Mlh1p; mammalian homolog is implicated mammalian microsatellite instability; GO_component: GO:0032390 - MutLbeta complex [Evidence IEA]; GO_component: GO:0097587 - MutLgamma complex [Evidence IPI] [PMID 9770499]; GO_component: GO:0005712 - chiasma [Evidence IBA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IPI] [PMID 10570173]; GO_component: GO:0000795 - synaptonemal complex [Evidence IBA]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0016887 - ATPase activity [Evidence IBA]; GO_function: GO:0016887 - ATPase activity [Evidence ISS] [PMID 23316435]; GO_function: GO:0030983 - mismatched DNA binding [Evidence IBA,IEA]; GO_process: GO:0006281 - DNA repair [Evidence IEA]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0000710 - meiotic mismatch repair [Evidence IMP] [PMID 23316435]; GO_process: GO:0006298 - mismatch repair [Evidence IEA]; GO_process: GO:0006298 - mismatch repair [Evidence IMP] [PMID 10679328]; GO_process: GO:0006298 - mismatch repair [Evidence IMP] [PMID 9770499]; GO_process: GO:0007131 - reciprocal meiotic recombination [Evidence IEA]; GO_process: GO:0007131 - reciprocal meiotic recombination [Evidence IMP] [PMID 10570173]; mismatch repair protein MLH3 1380525 MLH3 30036394 MLH3 Sugiyamaella lignohabitans mismatch repair protein MLH3 XP_018734666.1 1378816 R 796027 CDS AWJ20_429 30036405 1384500..1384823 A 1 NC_031672.1 Ribosomal 60S subunit protein L21B; homologous to mammalian ribosomal protein L21, no bacterial homolog; RPL21B has a paralog, RPL21A, that arose from the whole genome duplication; GO_component: GO:0022625 - cytosolic large ribosomal subunit [Evidence IDA] [PMID 11983894]; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA,IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IC] [PMID 11983894]; GO_process: GO:0002181 - cytoplasmic translation [Evidence IC] [PMID 11983894]; GO_process: GO:0006412 - translation [Evidence IEA]; ribosomal 60S subunit protein L21B 1384823 RPL21B 30036405 RPL21B Sugiyamaella lignohabitans ribosomal 60S subunit protein L21B XP_018734667.1 1384500 D 796027 CDS AWJ20_430 30036417 1385726..1386871 A 1 NC_031672.1 Mitochondrial pyrimidine nucleotide transporter; imports pyrimidine nucleoside triphosphates and exports pyrimidine nucleoside monophosphates; member of the mitochondrial carrier family; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 7891656]; GO_function: GO:0015218 - pyrimidine nucleotide transmembrane transporter activity [Evidence IDA] [PMID 16194150]; GO_function: GO:0005215 - transporter activity [Evidence ISS] [PMID 7891656]; GO_process: GO:0000002 - mitochondrial genome maintenance [Evidence IGI] [PMID 7891656]; GO_process: GO:0006864 - pyrimidine nucleotide transport [Evidence IDA] [PMID 16194150]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IDA] [PMID 16194150]; GO_process: GO:0006810 - transport [Evidence IEA]; Rim2p 1386871 RIM2 30036417 RIM2 Sugiyamaella lignohabitans Rim2p XP_018734668.1 1385726 D 796027 CDS AWJ20_431 30036428 complement(1386980..1389841) A 1 NC_031672.1 Subunit of the Anaphase-Promoting Complex/Cyclosome (APC/C); APC/C is a ubiquitin-protein ligase required for degradation of anaphase inhibitors, including mitotic cyclins, during the metaphase/anaphase transition; component of the platform domain of the APC/C, based on structural analysis; relative distribution to nuclear foci decreases upon DNA replication stress; GO_component: GO:0005680 - anaphase-promoting complex [Evidence IDA] [PMID 9469814]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence IDA] [PMID 16481473]; GO_process: GO:0031145 - anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 16481473]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0031497 - chromatin assembly [Evidence IMP] [PMID 12399376]; GO_process: GO:0007067 - mitotic nuclear division [Evidence IEA]; GO_process: GO:0016567 - protein ubiquitination [Evidence IEA]; GO_process: GO:0016567 - protein ubiquitination [Evidence IMP] [PMID 16481473]; anaphase promoting complex subunit 5 1389841 APC5 30036428 APC5 Sugiyamaella lignohabitans anaphase promoting complex subunit 5 XP_018734669.1 1386980 R 796027 CDS AWJ20_432 30036439 1391973..1396220 A 1 NC_031672.1 bifunctional ATP-dependent DNA helicase/ssDNA endodeoxyribonuclease DNA2 1396220 DNA2 30036439 DNA2 Sugiyamaella lignohabitans bifunctional ATP-dependent DNA helicase/ssDNA endodeoxyribonuclease DNA2 XP_018734670.1 1391973 D 796027 CDS AWJ20_433 30036450 complement(1401066..1401611) A 1 NC_031672.1 Myo-inositol transporter; member of the sugar transporter superfamily; expression is repressed by inositol and choline via Opi1p and derepressed via Ino2p and Ino4p; relative distribution to the vacuole increases upon DNA replication stress; ITR1 has a paralog, ITR2, that arose from the whole genome duplication; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 22842922]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA,IEA]; GO_component: GO:0016020 - membrane [Evidence ISS] [PMID 2040626]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 16233524]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 22842922]; GO_function: GO:0005365 - myo-inositol transmembrane transporter activity [Evidence IMP,ISS] [PMID 2040626]; GO_function: GO:0022891 - substrate-specific transmembrane transporter activity [Evidence IEA]; GO_function: GO:0022857 - transmembrane transporter activity [Evidence IEA]; GO_function: GO:0005215 - transporter activity [Evidence IEA]; GO_process: GO:0015798 - myo-inositol transport [Evidence IMP] [PMID 2040626]; GO_process: GO:0007124 - pseudohyphal growth [Evidence IMP] [PMID 24603354]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IMP] [PMID 2040626]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; myo-inositol transporter ITR1 1401611 ITR1 30036450 ITR1 Sugiyamaella lignohabitans myo-inositol transporter ITR1 XP_018734671.1 1401066 R 796027 CDS AWJ20_439 30036516 complement(1406247..1407311) A 1 NC_031672.1 Reticulon protein; stabilizes membrane curvature; involved in nuclear pore assembly and maintenance of tubular ER morphology; mutant overexpressing RTN1 shows increase in tubular ER; interacts with exocyst subunit Sec6p, Yip3p, and Sbh1p; more abundant than Rtn2p; member of the RTNLA subfamily; mutants have reduced phosphatidylserine transfer between the ER and mitochondria; RTN1 has a paralog, RTN2, that arose from the whole genome duplication; GO_component: GO:0005794 - Golgi apparatus [Evidence IDA] [PMID 16002643]; GO_component: GO:0032541 - cortical endoplasmic reticulum [Evidence IDA] [PMID 16624861]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 14562095]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 16002643]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0071782 - endoplasmic reticulum tubular network [Evidence IDA] [PMID 16469703]; GO_component: GO:0030176 - integral component of endoplasmic reticulum membrane [Evidence IDA] [PMID 16624861]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0007029 - endoplasmic reticulum organization [Evidence IGI] [PMID 19665976]; GO_process: GO:0071788 - endoplasmic reticulum tubular network maintenance [Evidence IGI] [PMID 21502358]; GO_process: GO:0071786 - endoplasmic reticulum tubular network organization [Evidence IGI,IMP] [PMID 16469703]; GO_process: GO:0071786 - endoplasmic reticulum tubular network organization [Evidence IMP] [PMID 16624861]; GO_process: GO:0071786 - endoplasmic reticulum tubular network organization [Evidence IGI] [PMID 18309084]; GO_process: GO:0071786 - endoplasmic reticulum tubular network organization [Evidence IGI] [PMID 18442980]; GO_process: GO:0071786 - endoplasmic reticulum tubular network organization [Evidence IGI,IPI] [PMID 19665976]; GO_process: GO:0051292 - nuclear pore complex assembly [Evidence IGI] [PMID 19273614]; Rtn1p 1407311 RTN1 30036516 RTN1 Sugiyamaella lignohabitans Rtn1p XP_018734672.1 1406247 R 796027 CDS AWJ20_440 30036528 1409379..1412549 A 1 NC_031672.1 Adaptor protein that links actin to clathrin and endocytosis; involved in membrane cytoskeleton assembly and cell polarization; present in the actin cortical patch of the emerging bud tip; dimer in vivo; GO_component: GO:0030479 - actin cortical patch [Evidence IEA]; GO_component: GO:0030479 - actin cortical patch [Evidence IDA] [PMID 10397764]; GO_component: GO:0005938 - cell cortex [Evidence IEA]; GO_component: GO:0005934 - cellular bud tip [Evidence IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA]; GO_component: GO:0000131 - incipient cellular bud site [Evidence IDA] [PMID 11302750]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 19053807]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_function: GO:0003779 - actin binding [Evidence IEA,IEA]; GO_function: GO:0005543 - phospholipid binding [Evidence IEA]; GO_function: GO:0030674 - protein binding, bridging [Evidence IGI,IPI] [PMID 14704157]; GO_process: GO:0007015 - actin filament organization [Evidence IMP] [PMID 10397764]; GO_process: GO:0007121 - bipolar cellular bud site selection [Evidence TAS] [PMID 10652251]; GO_process: GO:0006897 - endocytosis [Evidence IMP] [PMID 8380177]; GO_process: GO:0006887 - exocytosis [Evidence TAS] [PMID 10652251]; GO_process: GO:0031505 - fungal-type cell wall organization [Evidence TAS] [PMID 10652251]; Sla2p 1412549 SLA2 30036528 SLA2 Sugiyamaella lignohabitans Sla2p XP_018734673.1 1409379 D 796027 CDS AWJ20_441 30036539 complement(1414570..1416462) A 1 NC_031672.1 Class II abasic (AP) endonuclease involved in repair of DNA damage; homolog of human HAP1 and E. coli exoIII; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IC] [PMID 10806210]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0003906 - DNA-(apurinic or apyrimidinic site) lyase activity [Evidence IEA]; GO_function: GO:0003906 - DNA-(apurinic or apyrimidinic site) lyase activity [Evidence IDA] [PMID 10806210]; GO_function: GO:0008311 - double-stranded DNA 3'-5' exodeoxyribonuclease activity [Evidence IDA] [PMID 11238902]; GO_function: GO:0004519 - endonuclease activity [Evidence IEA]; GO_function: GO:0016829 - lyase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004518 - nuclease activity [Evidence IEA]; GO_function: GO:0008081 - phosphoric diester hydrolase activity [Evidence IDA] [PMID 11238902]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0000737 - DNA catabolic process, endonucleolytic [Evidence IEA]; GO_process: GO:0006281 - DNA repair [Evidence IEA,IEA]; GO_process: GO:0006284 - base-excision repair [Evidence IGI] [PMID 9765213]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0090305 - nucleic acid phosphodiester bond hydrolysis [Evidence IEA]; DNA-(apurinic or apyrimidinic site) lyase APN2 1416462 APN2 30036539 APN2 Sugiyamaella lignohabitans DNA-(apurinic or apyrimidinic site) lyase APN2 XP_018734674.1 1414570 R 796027 CDS AWJ20_442 30036550 complement(1416894..1419995) A 1 NC_031672.1 ubiquitin-protein ligase E3 (predicted) 1419995 pep3 30036550 pep3 Sugiyamaella lignohabitans ubiquitin-protein ligase E3 (predicted) XP_018734675.1 1416894 R 796027 CDS AWJ20_443 30036561 1422274..1423596 A 1 NC_031672.1 Specific translational activator for the mitochondrial COX1 mRNA; loosely associated with the matrix face of the mitochondrial inner membrane; localizes to vacuole membrane in response to H2O2; influences both COX1 mRNA translation and Cox1p assembly into cytochrome c oxidase; binds to heme B, which may be a mechanism for sensing oxygen levels in order to regulate cytochrome c oxidase biogenesis; GO_component: GO:0031314 - extrinsic component of mitochondrial inner membrane [Evidence IDA] [PMID 15306853]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005774 - vacuolar membrane [Evidence IDA] [PMID 23509072]; GO_function: GO:0045182 - translation regulator activity [Evidence IMP] [PMID 19710419]; GO_process: GO:0008380 - RNA splicing [Evidence IEA]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0097034 - mitochondrial respiratory chain complex IV biogenesis [Evidence IMP] [PMID 15306853]; GO_process: GO:0070131 - positive regulation of mitochondrial translation [Evidence IGI,IMP,IPI] [PMID 15306853]; GO_process: GO:0070131 - positive regulation of mitochondrial translation [Evidence IMP] [PMID 19710419]; Mss51p 1423596 MSS51 30036561 MSS51 Sugiyamaella lignohabitans Mss51p XP_018734676.1 1422274 D 796027 CDS AWJ20_444 30036572 1428273..1429601 A 1 NC_031672.1 Protein involved in 60S ribosomal subunit assembly or modification; contains multiple WD repeats; interacts with Qsr1p in a two-hybrid assay; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 9271392]; GO_component: GO:0022626 - cytosolic ribosome [Evidence IDA] [PMID 9271392]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 23212245]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0000027 - ribosomal large subunit assembly [Evidence IGI,IMP] [PMID 9271392]; Sqt1p 1429601 SQT1 30036572 SQT1 Sugiyamaella lignohabitans Sqt1p XP_018734677.1 1428273 D 796027 CDS AWJ20_445 30036583 complement(join(1430334..1431034,1432374..1432491)) A 1 NC_031672.1 Riboflavin synthase; catalyzes the last step of the riboflavin biosynthesis pathway; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0004746 - riboflavin synthase activity [Evidence IEA,IEA]; GO_function: GO:0004746 - riboflavin synthase activity [Evidence IDA,ISS] [PMID 7814407]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; GO_process: GO:0009231 - riboflavin biosynthetic process [Evidence IEA,IEA,IEA]; GO_process: GO:0009231 - riboflavin biosynthetic process [Evidence IMP] [PMID 7814407]; riboflavin synthase 1432491 RIB5 30036583 RIB5 Sugiyamaella lignohabitans riboflavin synthase XP_018734678.1 1430334 R 796027 CDS AWJ20_446 30036594 1430530..1431138 A 1 NC_031672.1 uncharacterized protein 1431138 30036594 AWJ20_446 Sugiyamaella lignohabitans uncharacterized protein XP_018734679.1 1430530 D 796027 CDS AWJ20_447 30036605 1441797..1443305 A 1 NC_031672.1 uncharacterized protein 1443305 30036605 AWJ20_447 Sugiyamaella lignohabitans uncharacterized protein XP_018734680.1 1441797 D 796027 CDS AWJ20_448 30036616 1444045..1445328 A 1 NC_031672.1 acyl-CoA dehydrogenase, mitochondrial precursor 1445328 30036616 AWJ20_448 Sugiyamaella lignohabitans acyl-CoA dehydrogenase, mitochondrial precursor XP_018734681.1 1444045 D 796027 CDS AWJ20_449 30036627 1445761..1446945 A 1 NC_031672.1 Nucleolar protein found in preribosomal complexes; contains an RNA recognition motif (RRM); relative distribution to the nucleolus increases upon DNA replication stress; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 11452019]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 22842922]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_component: GO:0030684 - preribosome [Evidence IDA] [PMID 17922018]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence ISS] [PMID 11452019]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; Nop13p 1446945 NOP13 30036627 NOP13 Sugiyamaella lignohabitans Nop13p XP_018734682.1 1445761 D 796027 CDS AWJ20_450 30036639 complement(1447096..1450629) A 1 NC_031672.1 uncharacterized protein 1450629 30036639 AWJ20_450 Sugiyamaella lignohabitans uncharacterized protein XP_018734683.1 1447096 R 796027 CDS AWJ20_451 30036650 1451958..1452986 A 1 NC_031672.1 Threonine aldolase; catalyzes the cleavage of L-allo-threonine and L-threonine to glycine; involved in glycine biosynthesis; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 12676688]; GO_function: GO:0008732 - L-allo-threonine aldolase activity [Evidence IDA] [PMID 9151955]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016829 - lyase activity [Evidence IEA,IEA]; GO_function: GO:0030170 - pyridoxal phosphate binding [Evidence IEA]; GO_function: GO:0004793 - threonine aldolase activity [Evidence IDA] [PMID 9163906]; GO_process: GO:0006520 - cellular amino acid metabolic process [Evidence IEA]; GO_process: GO:0006545 - glycine biosynthetic process [Evidence IEA]; GO_process: GO:0006545 - glycine biosynthetic process [Evidence IDA] [PMID 3086094]; GO_process: GO:0006567 - threonine catabolic process [Evidence IDA] [PMID 3086094]; threonine aldolase GLY1 1452986 GLY1 30036650 GLY1 Sugiyamaella lignohabitans threonine aldolase GLY1 XP_018734684.1 1451958 D 796027 CDS AWJ20_452 30036661 complement(1455254..1455754) A 1 NC_031672.1 uncharacterized protein 1455754 30036661 AWJ20_452 Sugiyamaella lignohabitans uncharacterized protein XP_018734685.1 1455254 R 796027 CDS AWJ20_453 30036672 1457087..1458373 A 1 NC_031672.1 ERMES complex subunit MDM12 1458373 MDM12 30036672 MDM12 Sugiyamaella lignohabitans ERMES complex subunit MDM12 XP_018734686.1 1457087 D 796027 CDS AWJ20_455 30036694 1459089..1460003 A 1 NC_031672.1 uncharacterized protein 1460003 30036694 AWJ20_455 Sugiyamaella lignohabitans uncharacterized protein XP_018734687.1 1459089 D 796027 CDS AWJ20_459 30036738 join(1464272..1464415,1464809..1465789) A 1 NC_031672.1 uncharacterized protein 1465789 30036738 AWJ20_459 Sugiyamaella lignohabitans uncharacterized protein XP_018734688.1 1464272 D 796027 CDS AWJ20_460 30036750 1467236..1468231 A 1 NC_031672.1 Uridylate kinase; catalyzes the seventh enzymatic step in the de novo biosynthesis of pyrimidines, converting uridine monophosphate (UMP) into uridine-5'-diphosphate (UDP); GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 8391780]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 8391780]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004017 - adenylate kinase activity [Evidence IDA,IGI] [PMID 1333436]; GO_function: GO:0004127 - cytidylate kinase activity [Evidence IEA]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0019205 - nucleobase-containing compound kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0019201 - nucleotide kinase activity [Evidence IEA]; GO_function: GO:0016776 - phosphotransferase activity, phosphate group as acceptor [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0009041 - uridylate kinase activity [Evidence IDA,IMP] [PMID 1655742]; GO_function: GO:0009041 - uridylate kinase activity [Evidence IDA] [PMID 2549068]; GO_process: GO:0006207 - 'de novo' pyrimidine nucleobase biosynthetic process [Evidence IDA] [PMID 8391780]; GO_process: GO:0006139 - nucleobase-containing compound metabolic process [Evidence IEA]; GO_process: GO:0006139 - nucleobase-containing compound metabolic process [Evidence IDA] [PMID 2549068]; GO_process: GO:0046939 - nucleotide phosphorylation [Evidence IEA]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; GO_process: GO:0006221 - pyrimidine nucleotide biosynthetic process [Evidence IEA]; bifunctional uridylate/adenylate kinase 1468231 URA6 30036750 URA6 Sugiyamaella lignohabitans bifunctional uridylate/adenylate kinase XP_018734689.1 1467236 D 796027 CDS AWJ20_461 30036761 complement(1469487..1470095) A 1 NC_031672.1 Component of the U4/U6.U5 snRNP complex; involved in mRNA splicing via spliceosome; GO_component: GO:0046540 - U4/U6 x U5 tri-snRNP complex [Evidence IDA] [PMID 10377396]; GO_component: GO:0046540 - U4/U6 x U5 tri-snRNP complex [Evidence IDA] [PMID 10449419]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005681 - spliceosomal complex [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA,IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008380 - RNA splicing [Evidence IEA]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0000398 - mRNA splicing, via spliceosome [Evidence IPI] [PMID 10377396]; GO_process: GO:0000398 - mRNA splicing, via spliceosome [Evidence IMP] [PMID 10449419]; GO_process: GO:0000398 - mRNA splicing, via spliceosome [Evidence IMP] [PMID 11720284]; Snu23p 1470095 SNU23 30036761 SNU23 Sugiyamaella lignohabitans Snu23p XP_018734690.1 1469487 R 796027 CDS AWJ20_462 30036772 complement(1471508..1472740) A 1 NC_031672.1 calmodulin-dependent protein kinase CMK2 1472740 CMK2 30036772 CMK2 Sugiyamaella lignohabitans calmodulin-dependent protein kinase CMK2 XP_018734691.1 1471508 R 796027 CDS AWJ20_463 30036783 1474171..1477122 A 1 NC_031672.1 Putative ATP-dependent RNA helicase of the DEAD-box protein family; constituent of 66S pre-ribosomal particles; essential protein involved in ribosome biogenesis; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 10871363]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IPI] [PMID 16095611]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IGI,IPI] [PMID 16803892]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 23212245]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004004 - ATP-dependent RNA helicase activity [Evidence ISS] [PMID 10077188]; GO_function: GO:0008026 - ATP-dependent helicase activity [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA,IEA]; GO_function: GO:0004386 - helicase activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016818 - hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides [Evidence IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:1902626 - assembly of large subunit precursor of preribosome [Evidence IMP] [PMID 22735702]; GO_process: GO:0000466 - maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 10871363]; GO_process: GO:0000463 - maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 10871363]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; Dbp10p 1477122 DBP10 30036783 DBP10 Sugiyamaella lignohabitans Dbp10p XP_018734692.1 1474171 D 796027 CDS AWJ20_464 30036794 1478034..1478756 A 1 NC_031672.1 uncharacterized protein 1478756 30036794 AWJ20_464 Sugiyamaella lignohabitans uncharacterized protein XP_018734693.1 1478034 D 796027 CDS AWJ20_465 30036805 complement(1479618..1480676) A 1 NC_031672.1 Non-ATPase regulatory subunit of the 26S proteasome; similar to putative proteasomal subunits in other species; null mutant is temperature sensitive and exhibits cell cycle and proteasome assembly defects; protein abundance increases in response to DNA replication stress; relocalizes to the cytosol in response to hypoxia; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 22932476]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22932476]; GO_component: GO:0000502 - proteasome complex [Evidence IEA]; GO_component: GO:0008541 - proteasome regulatory particle, lid subcomplex [Evidence IDA] [PMID 11742986]; GO_component: GO:0008541 - proteasome regulatory particle, lid subcomplex [Evidence IDA] [PMID 9741626]; GO_component: GO:0034515 - proteasome storage granule [Evidence IDA] [PMID 18504300]; GO_function: GO:0005198 - structural molecule activity [Evidence IMP] [PMID 10490597]; GO_process: GO:0043248 - proteasome assembly [Evidence IMP] [PMID 10490597]; GO_process: GO:0006511 - ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 10490597]; proteasome regulatory particle lid subunit RPN9 1480676 RPN9 30036805 RPN9 Sugiyamaella lignohabitans proteasome regulatory particle lid subunit RPN9 XP_018734694.1 1479618 R 796027 CDS AWJ20_466 30036816 1481780..1482940 A 1 NC_031672.1 uncharacterized protein 1482940 30036816 AWJ20_466 Sugiyamaella lignohabitans uncharacterized protein XP_018734695.1 1481780 D 796027 CDS AWJ20_467 30036826 complement(1483081..1484094) A 1 NC_031672.1 Mitochondrial 3-hydroxyacyl-thioester dehydratase; involved in fatty acid biosynthesis, required for respiratory growth and for normal mitochondrial morphology; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 15387819]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0019171 - 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity [Evidence IEA]; GO_function: GO:0019171 - 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity [Evidence IDA] [PMID 15387819]; GO_function: GO:0016829 - lyase activity [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_process: GO:0006633 - fatty acid biosynthetic process [Evidence IEA]; GO_process: GO:0006633 - fatty acid biosynthetic process [Evidence IGI,ISS] [PMID 15387819]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; hydroxyacyl-thioester dehydratase HTD2 1484094 HTD2 30036826 HTD2 Sugiyamaella lignohabitans hydroxyacyl-thioester dehydratase HTD2 XP_018734696.1 1483081 R 796027 CDS AWJ20_468 30036837 1484516..1485406 A 1 NC_031672.1 Protein involved in assembly and export of the large ribosomal subunit; nucleolar protein; constituent of 66S pre-ribosomal particles; contains a sigma(70)-like motif, which is thought to bind RNA; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 11864606]; GO_component: GO:0005730 - nucleolus [Evidence IPI] [PMID 11864607]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 11583614]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 17443350]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0019843 - rRNA binding [Evidence IEA]; GO_function: GO:0042134 - rRNA primary transcript binding [Evidence IPI] [PMID 11864606]; GO_process: GO:0000466 - maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 11864606]; GO_process: GO:0000463 - maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 11864606]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0000027 - ribosomal large subunit assembly [Evidence IPI] [PMID 11864607]; GO_process: GO:0000055 - ribosomal large subunit export from nucleus [Evidence IMP] [PMID 16581791]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; Rpf1p 1485406 RPF1 30036837 RPF1 Sugiyamaella lignohabitans Rpf1p XP_018734697.1 1484516 D 796027 CDS AWJ20_470 30036860 complement(1486328..1489417) A 1 NC_031672.1 Lysine-specific metalloprotease of the pitrilysin family; metalloprotease of the intermembrane space; degrades proteins and presequence peptides cleaved from imported proteins; required for normal mitochondrial morphology; GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IEA]; GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IDA] [PMID 15772085]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 15606766]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA,IEA]; GO_function: GO:0004222 - metalloendopeptidase activity [Evidence IDA] [PMID 15606766]; GO_function: GO:0004222 - metalloendopeptidase activity [Evidence IMP] [PMID 15772085]; GO_function: GO:0008237 - metallopeptidase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_process: GO:0006508 - proteolysis [Evidence IEA,IEA]; GO_process: GO:0006508 - proteolysis [Evidence IDA] [PMID 15606766]; GO_process: GO:0051603 - proteolysis involved in cellular protein catabolic process [Evidence IMP] [PMID 15772085]; Cym1p 1489417 CYM1 30036860 CYM1 Sugiyamaella lignohabitans Cym1p XP_018734698.1 1486328 R 796027 CDS AWJ20_471 30036871 1491948..1495244 A 1 NC_031672.1 Karyopherin; involved in nuclear import and export of proteins, including import of replication protein A and export of Far1p and transcription factors Swi5p, Swi6p, Msn2p, and Pho4p; required for re-export of mature tRNAs after their retrograde import from the cytoplasm; exportin-5 homolog; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 17020589]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 10485850]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 10545454]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 17020589]; GO_function: GO:0008262 - importin-alpha export receptor activity [Evidence IDA] [PMID 9214382]; GO_function: GO:0005515 - protein binding [Evidence IPI] [PMID 12697814]; GO_process: GO:0006611 - protein export from nucleus [Evidence IDA] [PMID 12697814]; GO_process: GO:0006611 - protein export from nucleus [Evidence IMP] [PMID 23716718]; GO_process: GO:0006611 - protein export from nucleus [Evidence IDA] [PMID 9853758]; GO_process: GO:0071528 - tRNA re-export from nucleus [Evidence IGI] [PMID 20032305]; Msn5p 1495244 MSN5 30036871 MSN5 Sugiyamaella lignohabitans Msn5p XP_018734699.1 1491948 D 796027 CDS AWJ20_472 30036882 complement(1495477..1497612) A 1 NC_031672.1 NADP-cytochrome P450 reductase; involved in ergosterol biosynthesis; associated and coordinately regulated with Erg11p; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0043231 - intracellular membrane-bounded organelle [Evidence IEA,IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IEA,IEA]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IDA] [PMID 16407407]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_function: GO:0010181 - FMN binding [Evidence IEA]; GO_function: GO:0003958 - NADPH-hemoprotein reductase activity [Evidence IEA,IEA]; GO_function: GO:0003958 - NADPH-hemoprotein reductase activity [Evidence IDA] [PMID 9087488]; GO_function: GO:0009055 - electron carrier activity [Evidence IDA] [PMID 11485306]; GO_function: GO:0005506 - iron ion binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_process: GO:0006696 - ergosterol biosynthetic process [Evidence IMP] [PMID 9468503]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0006694 - steroid biosynthetic process [Evidence IEA]; GO_process: GO:0008202 - steroid metabolic process [Evidence IEA]; GO_process: GO:0016126 - sterol biosynthetic process [Evidence IEA]; Ncp1p 1497612 NCP1 30036882 NCP1 Sugiyamaella lignohabitans Ncp1p XP_018734700.1 1495477 R 796027 CDS AWJ20_473 30036893 join(1502673..1502766,1502964..1506145) A 1 NC_031672.1 uncharacterized protein 1506145 30036893 AWJ20_473 Sugiyamaella lignohabitans uncharacterized protein XP_018734701.1 1502673 D 796027 CDS AWJ20_474 30036904 1506718..1508040 A 1 NC_031672.1 uncharacterized protein 1508040 30036904 AWJ20_474 Sugiyamaella lignohabitans uncharacterized protein XP_018734702.1 1506718 D 796027 CDS AWJ20_475 30036915 1508296..1510590 A 1 NC_031672.1 Protein that recognizes and binds damaged DNA (with Rad23p) during NER; subunit of Nuclear Excision Repair Factor 2 (NEF2); also involved, with Rad23p, in turnover of ubiquitylated proteins; NER stands for nucleotide excision repair; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 19889839]; GO_component: GO:0000111 - nucleotide-excision repair factor 2 complex [Evidence IDA] [PMID 7768886]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 19889839]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0003684 - damaged DNA binding [Evidence IEA]; GO_function: GO:0003684 - damaged DNA binding [Evidence IDA] [PMID 9813069]; GO_function: GO:0003684 - damaged DNA binding [Evidence IDA] [PMID 9837874]; GO_process: GO:0006281 - DNA repair [Evidence IEA]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0006289 - nucleotide-excision repair [Evidence IEA]; GO_process: GO:0006289 - nucleotide-excision repair [Evidence IMP] [PMID 18936173]; GO_process: GO:0043161 - proteasome-mediated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 19889839]; Rad4p 1510590 RAD4 30036915 RAD4 Sugiyamaella lignohabitans Rad4p XP_018734703.1 1508296 D 796027 CDS AWJ20_476 30036926 complement(1510799..1511644) A 1 NC_031672.1 ER membrane protein involved in a late step of GPI anchor assembly; involved in the addition of phosphoethanolamine to the multiply mannosylated glycosylphosphatidylinositol (GPI) intermediate; human PIG-Fp is a functional homolog; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence ISS] [PMID 10793139]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA,IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IC] [PMID 10793139]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0051377 - mannose-ethanolamine phosphotransferase activity [Evidence IMP] [PMID 10793139]; GO_process: GO:0006506 - GPI anchor biosynthetic process [Evidence IEA,IEA,IEA]; GO_process: GO:0006506 - GPI anchor biosynthetic process [Evidence IMP] [PMID 10793139]; Gpi11p 1511644 GPI11 30036926 GPI11 Sugiyamaella lignohabitans Gpi11p XP_018734704.1 1510799 R 796027 CDS AWJ20_477 30036937 1512277..1515195 A 1 NC_031672.1 RNA-binding subunit of the mRNA cleavage and polyadenylation factor; involved in poly(A) site recognition and required for both pre-mRNA cleavage and polyadenylation, 51% sequence similarity with mammalian AAUAA-binding subunit of CPSF; GO_component: GO:0005847 - mRNA cleavage and polyadenylation specificity factor complex [Evidence IPI] [PMID 10523662]; GO_component: GO:0005847 - mRNA cleavage and polyadenylation specificity factor complex [Evidence IDA] [PMID 12819204]; GO_component: GO:0005847 - mRNA cleavage and polyadenylation specificity factor complex [Evidence IPI] [PMID 9099738]; GO_component: GO:0005849 - mRNA cleavage factor complex [Evidence IPI] [PMID 9099738]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IDA] [PMID 9099738]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_process: GO:0006379 - mRNA cleavage [Evidence IDA] [PMID 11344258]; GO_process: GO:0006378 - mRNA polyadenylation [Evidence IDA] [PMID 11344258]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0006369 - termination of RNA polymerase II transcription [Evidence IMP] [PMID 12145212]; Cft1p 1515195 CFT1 30036937 CFT1 Sugiyamaella lignohabitans Cft1p XP_018734705.1 1512277 D 796027 CDS AWJ20_478 30036948 1515513..1517081 A 1 NC_031672.1 RNA-binding subunit of the mRNA cleavage and polyadenylation factor; involved in poly(A) site recognition and required for both pre-mRNA cleavage and polyadenylation, 51% sequence similarity with mammalian AAUAA-binding subunit of CPSF; GO_component: GO:0005847 - mRNA cleavage and polyadenylation specificity factor complex [Evidence IPI] [PMID 10523662]; GO_component: GO:0005847 - mRNA cleavage and polyadenylation specificity factor complex [Evidence IDA] [PMID 12819204]; GO_component: GO:0005847 - mRNA cleavage and polyadenylation specificity factor complex [Evidence IPI] [PMID 9099738]; GO_component: GO:0005849 - mRNA cleavage factor complex [Evidence IPI] [PMID 9099738]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IDA] [PMID 9099738]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_process: GO:0006379 - mRNA cleavage [Evidence IDA] [PMID 11344258]; GO_process: GO:0006378 - mRNA polyadenylation [Evidence IDA] [PMID 11344258]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0006369 - termination of RNA polymerase II transcription [Evidence IMP] [PMID 12145212]; Cft1p 1517081 CFT1 30036948 CFT1 Sugiyamaella lignohabitans Cft1p XP_018734706.1 1515513 D 796027 CDS AWJ20_479 30036959 complement(1517294..1519732) A 1 NC_031672.1 Protein that forms a complex with Pbp1p; complex may mediate posttranscriptional regulation of HO; involved in propagation of M2 dsRNA satellite of L-A virus; allelic variation affects mitochondrial genome stability, drug resistance, and more; forms cytoplasmic foci upon DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005844 - polysome [Evidence IDA] [PMID 15082763]; GO_function: GO:0004518 - nuclease activity [Evidence IEA]; GO_function: GO:0004518 - nuclease activity [Evidence ISS] [PMID 15082763]; GO_process: GO:0006281 - DNA repair [Evidence IEA]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IMP] [PMID 18617998]; GO_process: GO:0044419 - interspecies interaction between organisms [Evidence IMP] [PMID 7532890]; GO_process: GO:0090305 - nucleic acid phosphodiester bond hydrolysis [Evidence IEA]; Mkt1p 1519732 MKT1 30036959 MKT1 Sugiyamaella lignohabitans Mkt1p XP_018734707.1 1517294 R 796027 CDS AWJ20_480 30036971 complement(1520037..1521020) A 1 NC_031672.1 conserved hypothetical protein, similar to Fe II, 2-oxoglutarate-dependent dioxygenases; allele of CaO19.1306; putative dioxygenase 1521020 30036971 AWJ20_480 Sugiyamaella lignohabitans putative dioxygenase XP_018734708.1 1520037 R 796027 CDS AWJ20_481 30036982 1522927..1523742 A 1 NC_031672.1 Mitochondrial inner membrane transporter; transports oxaloacetate, sulfate, thiosulfate, and isopropylmalate; member of the mitochondrial carrier family; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IDA] [PMID 10428783]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0034658 - isopropylmalate transmembrane transporter activity [Evidence IDA] [PMID 18682385]; GO_function: GO:1901239 - malonate(1-) transmembrane transporter activity [Evidence IDA] [PMID 10428783]; GO_function: GO:0015131 - oxaloacetate transmembrane transporter activity [Evidence IDA] [PMID 10428783]; GO_function: GO:0015116 - sulfate transmembrane transporter activity [Evidence IDA] [PMID 10428783]; GO_process: GO:0034659 - isopropylmalate transport [Evidence IDA] [PMID 18682385]; GO_process: GO:0015729 - oxaloacetate transport [Evidence IDA] [PMID 10428783]; GO_process: GO:0008272 - sulfate transport [Evidence IDA] [PMID 10428783]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Oac1p 1523742 OAC1 30036982 OAC1 Sugiyamaella lignohabitans Oac1p XP_018734709.1 1522927 D 796027 CDS AWJ20_482 30036993 complement(1525246..1528377) A 1 NC_031672.1 MYND domain-containing protein; required for ubiquitination and turnover of Rpn4p; interacts with Ubr2p (E3) and indirectly with Rad6p (E2); short-lived protein degraded in a Ubr2p/Rad6p dependent manner; similar to the A. nidulans samB gene; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006513 - protein monoubiquitination [Evidence IDA,IMP] [PMID 18070918]; GO_process: GO:0007116 - regulation of cell budding [Evidence IMP,ISS] [PMID 9427754]; Mub1p 1528377 MUB1 30036993 MUB1 Sugiyamaella lignohabitans Mub1p XP_018734710.1 1525246 R 796027 CDS AWJ20_483 30037004 1531667..1532677 A 1 NC_031672.1 uncharacterized protein 1532677 30037004 AWJ20_483 Sugiyamaella lignohabitans uncharacterized protein XP_018734711.1 1531667 D 796027 CDS AWJ20_484 30037015 join(1537930..1540471,1540591..1542065) A 1 NC_031672.1 Mucin family member that functions as an osmosensor in the HOG pathway; functions in the Sho1p-mediated HOG pathway with Msb2p; proposed to be a negative regulator of filamentous growth; mutant displays defects in beta-1,3 glucan synthesis and bud site selection; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA,ISS] [PMID 8550469]; GO_component: GO:0030427 - site of polarized growth [Evidence IDA] [PMID 17627274]; GO_function: GO:0005034 - osmosensor activity [Evidence IGI] [PMID 17627274]; GO_process: GO:0006075 - (1->3)-beta-D-glucan biosynthetic process [Evidence IMP] [PMID 8550469]; GO_process: GO:0000282 - cellular bud site selection [Evidence IMP] [PMID 8550469]; GO_process: GO:0031505 - fungal-type cell wall organization [Evidence IMP] [PMID 8550469]; GO_process: GO:0006972 - hyperosmotic response [Evidence IGI] [PMID 17627274]; GO_process: GO:0007232 - osmosensory signaling pathway via Sho1 osmosensor [Evidence IGI,IPI] [PMID 17627274]; Hkr1p 1542065 HKR1 30037015 HKR1 Sugiyamaella lignohabitans Hkr1p XP_018734712.1 1537930 D 796027 CDS AWJ20_485 30037026 complement(1538145..1538846) A 1 NC_031672.1 uncharacterized protein 1538846 30037026 AWJ20_485 Sugiyamaella lignohabitans uncharacterized protein XP_018734713.1 1538145 R 796027 CDS AWJ20_486 30037037 complement(1539309..1539716) A 1 NC_031672.1 putative MAP7 domain-containing protein 3 1539716 30037037 AWJ20_486 Sugiyamaella lignohabitans putative MAP7 domain-containing protein 3 XP_018734714.1 1539309 R 796027 CDS AWJ20_487 30037048 1543961..1545406 A 1 NC_031672.1 Endo-beta-1,3-glucanase; major protein of the cell wall, involved in cell wall maintenance; involved in incorporation of newly synthesized mannoprotein molecules into the cell wall; GO_component: GO:0005618 - cell wall [Evidence IEA,IEA]; GO_component: GO:0005576 - extracellular region [Evidence IEA]; GO_component: GO:0009277 - fungal-type cell wall [Evidence IDA] [PMID 2509432]; GO_component: GO:0009277 - fungal-type cell wall [Evidence IDA] [PMID 9748433]; GO_function: GO:0042124 - 1,3-beta-glucanosyltransferase activity [Evidence IMP] [PMID 7851411]; GO_function: GO:0008061 - chitin binding [Evidence IEA]; GO_function: GO:0042973 - glucan endo-1,3-beta-D-glucosidase activity [Evidence IDA] [PMID 8458852]; GO_function: GO:0004338 - glucan exo-1,3-beta-glucosidase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016798 - hydrolase activity, acting on glycosyl bonds [Evidence IEA]; GO_function: GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]; GO_process: GO:0005975 - carbohydrate metabolic process [Evidence IEA]; GO_process: GO:0031505 - fungal-type cell wall organization [Evidence IGI] [PMID 16986442]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; Bgl2p 1545406 BGL2 30037048 BGL2 Sugiyamaella lignohabitans Bgl2p XP_018734715.1 1543961 D 796027 CDS AWJ20_488 30037059 1547014..1549896 A 1 NC_031672.1 uncharacterized protein 1549896 30037059 AWJ20_488 Sugiyamaella lignohabitans uncharacterized protein XP_018734716.1 1547014 D 796027 CDS AWJ20_489 30037070 complement(1550075..1551514) A 1 NC_031672.1 uncharacterized protein 1551514 30037070 AWJ20_489 Sugiyamaella lignohabitans uncharacterized protein XP_018734717.1 1550075 R 796027 CDS AWJ20_490 30037082 complement(1552000..1553949) A 1 NC_031672.1 Vacuolar endopolyphosphatase with a role in phosphate metabolism; functions as a homodimer; relocalizes from vacuole to cytoplasm upon DNA replication stress; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA,IMP] [PMID 11566881]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IMP] [PMID 16862600]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA,IEA]; GO_function: GO:0000298 - endopolyphosphatase activity [Evidence IEA,IEA]; GO_function: GO:0000298 - endopolyphosphatase activity [Evidence IDA,IMP] [PMID 11447286]; GO_function: GO:0004309 - exopolyphosphatase activity [Evidence IEA]; GO_function: GO:0004309 - exopolyphosphatase activity [Evidence IMP] [PMID 16862600]; GO_function: GO:0004309 - exopolyphosphatase activity [Evidence IDA] [PMID 17009950]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA,IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_process: GO:0006798 - polyphosphate catabolic process [Evidence IDA] [PMID 17009950]; GO_process: GO:0006797 - polyphosphate metabolic process [Evidence IDA,IMP] [PMID 11447286]; Ppn1p 1553949 PPN1 30037082 PPN1 Sugiyamaella lignohabitans Ppn1p XP_018734718.1 1552000 R 796027 CDS AWJ20_491 30037093 complement(join(1554174..1554831,1555270..1555382)) A 1 NC_031672.1 uncharacterized protein 1555382 30037093 AWJ20_491 Sugiyamaella lignohabitans uncharacterized protein XP_018734719.1 1554174 R 796027 CDS AWJ20_492 30037104 complement(1555990..1556358) A 1 NC_031672.1 gnat family 1556358 30037104 AWJ20_492 Sugiyamaella lignohabitans gnat family XP_018734720.1 1555990 R 796027 CDS AWJ20_493 30037115 complement(1556933..1560865) A 1 NC_031672.1 Plasma membrane ATP-binding cassette (ABC) transporter; required for the export of a-factor, catalyzes ATP hydrolysis coupled to a-factor transport; contains 12 transmembrane domains and two ATP binding domains; expressed only in MATa cells; GO_component: GO:0005794 - Golgi apparatus [Evidence IDA] [PMID 8045256]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 12374868]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 7679674]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 7679674]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016887 - ATPase activity [Evidence IEA]; GO_function: GO:0042626 - ATPase activity, coupled to transmembrane movement of substances [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_function: GO:0015440 - peptide-transporting ATPase activity [Evidence IDA,IMP] [PMID 11389139]; GO_function: GO:0015440 - peptide-transporting ATPase activity [Evidence IDA,IMP] [PMID 8626301]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA,IEA]; GO_process: GO:0000770 - peptide pheromone export [Evidence IMP] [PMID 2569166]; GO_process: GO:0019236 - response to pheromone [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; ATP-binding cassette alpha-factor transporter STE6 1560865 STE6 30037115 STE6 Sugiyamaella lignohabitans ATP-binding cassette alpha-factor transporter STE6 XP_018734721.1 1556933 R 796027 CDS AWJ20_494 30037126 complement(1561423..1561788) A 1 NC_031672.1 uncharacterized protein 1561788 30037126 AWJ20_494 Sugiyamaella lignohabitans uncharacterized protein XP_018734722.1 1561423 R 796027 CDS AWJ20_495 30037137 1568109..1569869 A 1 NC_031672.1 Plasma membrane low glucose sensor, regulates glucose transport; contains 12 predicted transmembrane segments and a long C-terminal tail required for induction of hexose transporters; also senses fructose and mannose; SNF3 has a paralog, RGT2, that arose from the whole genome duplication; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 2406560]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 24124599]; GO_function: GO:0005536 - glucose binding [Evidence TAS] [PMID 10477308]; GO_function: GO:0005355 - glucose transmembrane transporter activity [Evidence TAS] [PMID 10477308]; GO_function: GO:0004872 - receptor activity [Evidence TAS] [PMID 10477308]; GO_function: GO:0022891 - substrate-specific transmembrane transporter activity [Evidence IEA]; GO_function: GO:0022857 - transmembrane transporter activity [Evidence IEA]; GO_function: GO:0005215 - transporter activity [Evidence IEA]; GO_process: GO:0008643 - carbohydrate transport [Evidence IEA]; GO_process: GO:0051594 - detection of glucose [Evidence IGI,IMP] [PMID 8901598]; GO_process: GO:0015755 - fructose transport [Evidence IMP] [PMID 2046678]; GO_process: GO:0015758 - glucose transport [Evidence IMP] [PMID 2046678]; GO_process: GO:0015758 - glucose transport [Evidence IGI] [PMID 9564039]; GO_process: GO:0015761 - mannose transport [Evidence IMP] [PMID 2046678]; GO_process: GO:0045835 - negative regulation of meiosis [Evidence IMP] [PMID 18616605]; GO_process: GO:0007165 - signal transduction [Evidence TAS] [PMID 10477308]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; Snf3p 1569869 SNF3 30037137 SNF3 Sugiyamaella lignohabitans Snf3p XP_018734723.1 1568109 D 796027 CDS AWJ20_496 30037148 1570273..1573017 A 1 NC_031672.1 Nucleotide excision repair (NER) protein; binds damaged DNA during NER; binds DNA in an ATP-dependent manner (with Rad7p) during NER; required for NER of non-transcribed chromatin; subunit of Nucleotide Excision Repair Factor 4 (NEF4) and the Elongin-Cullin-Socs (ECS) ligase complex; GO_component: GO:0031463 - Cul3-RING ubiquitin ligase complex [Evidence IDA] [PMID 16675952]; GO_component: GO:0000113 - nucleotide-excision repair factor 4 complex [Evidence IDA] [PMID 9497356]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0008094 - DNA-dependent ATPase activity [Evidence IDA] [PMID 9497356]; GO_function: GO:0003684 - damaged DNA binding [Evidence IDA] [PMID 9497356]; GO_function: GO:0004386 - helicase activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA,IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence IDA] [PMID 16675952]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0006281 - DNA repair [Evidence IEA]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0000715 - nucleotide-excision repair, DNA damage recognition [Evidence IDA,IMP] [PMID 15177043]; GO_process: GO:0042787 - protein ubiquitination involved in ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 16675952]; DNA repair protein RAD16 1573017 RAD16 30037148 RAD16 Sugiyamaella lignohabitans DNA repair protein RAD16 XP_018734724.1 1570273 D 796027 CDS AWJ20_497 30037159 complement(1573213..1576380) A 1 NC_031672.1 Vacuolar glutathione S-conjugate transporter; member of ATP-binding cassette family; ATPase activity required to support vacuole fusion; forms stable complexes with vacuole fusion machinery; regulates Vam7p recruitment to vacuoles; has role in detoxifying metals such as cadmium, mercury, and arsenite; also transports unconjugated bilirubin, selenodigluthatione, and oxidized glutathione; similar to human cystic fibrosis protein CFTR; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 23658021]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 8692889]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016887 - ATPase activity [Evidence IEA]; GO_function: GO:0042626 - ATPase activity, coupled to transmembrane movement of substances [Evidence IEA]; GO_function: GO:0015127 - bilirubin transmembrane transporter activity [Evidence IGI,IMP] [PMID 10790694]; GO_function: GO:0015431 - glutathione S-conjugate-exporting ATPase activity [Evidence IDA] [PMID 10220408]; GO_function: GO:0015431 - glutathione S-conjugate-exporting ATPase activity [Evidence IDA] [PMID 12383937]; GO_function: GO:0015431 - glutathione S-conjugate-exporting ATPase activity [Evidence IDA] [PMID 12755704]; GO_function: GO:0015431 - glutathione S-conjugate-exporting ATPase activity [Evidence IDA] [PMID 9217966]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0015723 - bilirubin transport [Evidence IGI,IMP] [PMID 10790694]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0046686 - response to cadmium ion [Evidence IEA]; GO_process: GO:0010038 - response to metal ion [Evidence IDA] [PMID 10220408]; GO_process: GO:0010038 - response to metal ion [Evidence IDA] [PMID 12755704]; GO_process: GO:0010038 - response to metal ion [Evidence IDA] [PMID 9217966]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IMP] [PMID 10790694]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; GO_process: GO:0042144 - vacuole fusion, non-autophagic [Evidence IMP] [PMID 23658021]; ATP-binding cassette glutathione S-conjugate transporter YCF1 1576380 YCF1 30037159 YCF1 Sugiyamaella lignohabitans ATP-binding cassette glutathione S-conjugate transporter YCF1 XP_018734725.1 1573213 R 796027 CDS AWJ20_498 30037170 1579947..1581038 A 1 NC_031672.1 G protein beta subunit; forms a dimer with Ste18p to activate the mating signaling pathway, forms a heterotrimer with Gpa1p and Ste18p to dampen signaling; may recruit Rho1p to the polarized growth site during mating; contains WD40 repeats; GO_component: GO:0005834 - heterotrimeric G-protein complex [Evidence IMP] [PMID 2105453]; GO_component: GO:0005834 - heterotrimeric G-protein complex [Evidence IDA] [PMID 8995254]; GO_component: GO:0005937 - mating projection [Evidence IDA] [PMID 11073983]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 8995254]; GO_function: GO:0004871 - signal transducer activity [Evidence IEA]; GO_function: GO:0004871 - signal transducer activity [Evidence IMP] [PMID 2107073]; GO_process: GO:0031684 - heterotrimeric G-protein complex cycle [Evidence IMP] [PMID 2107073]; GO_process: GO:0001403 - invasive growth in response to glucose limitation [Evidence IMP] [PMID 15192700]; GO_process: GO:0000750 - pheromone-dependent signal transduction involved in conjugation with cellular fusion [Evidence IGI,IPI] [PMID 10087263]; GO_process: GO:0010525 - regulation of transposition, RNA-mediated [Evidence IMP] [PMID 9566871]; GO_process: GO:0019236 - response to pheromone [Evidence IEA]; GO_process: GO:0007165 - signal transduction [Evidence IEA]; Ste4p 1581038 STE4 30037170 STE4 Sugiyamaella lignohabitans Ste4p XP_018734726.1 1579947 D 796027 CDS AWJ20_499 30037181 complement(1582228..1585509) A 1 NC_031672.1 Component of a membrane-bound complex containing the Tor2p kinase; contains Tor2p kinase and other proteins; may have a role in regulation of cell growth; GO_component: GO:0031932 - TORC2 complex [Evidence IPI] [PMID 12408816]; GO_component: GO:0005737 - cytoplasm [Evidence IPI] [PMID 12408816]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 19144819]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0017016 - Ras GTPase binding [Evidence ISS] [PMID 17303383]; GO_function: GO:0005546 - phosphatidylinositol-4,5-bisphosphate binding [Evidence IDA] [PMID 19144819]; GO_process: GO:0031929 - TOR signaling [Evidence IC] [PMID 12408816]; GO_process: GO:0030950 - establishment or maintenance of actin cytoskeleton polarity [Evidence IMP,IPI] [PMID 12408816]; GO_process: GO:0031505 - fungal-type cell wall organization [Evidence IPI] [PMID 12408816]; GO_process: GO:0046580 - negative regulation of Ras protein signal transduction [Evidence ISS] [PMID 17303383]; GO_process: GO:0001558 - regulation of cell growth [Evidence IPI] [PMID 12408816]; Avo1p 1585509 AVO1 30037181 AVO1 Sugiyamaella lignohabitans Avo1p XP_018734727.1 1582228 R 796027 CDS AWJ20_500 30037194 complement(1586375..1587148) A 1 NC_031672.1 Low-affinity amino acid permease; may act to supply the cell with amino acids as nitrogen source in nitrogen-poor conditions; transcription is induced under conditions of sulfur limitation; plays a role in regulating Ty1 transposition; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence ISS] [PMID 10654085]; GO_function: GO:0015171 - amino acid transmembrane transporter activity [Evidence IEA]; GO_function: GO:0015171 - amino acid transmembrane transporter activity [Evidence IDA] [PMID 10654085]; GO_function: GO:0015171 - amino acid transmembrane transporter activity [Evidence IMP] [PMID 14697254]; GO_process: GO:0003333 - amino acid transmembrane transport [Evidence IEA]; GO_process: GO:0006865 - amino acid transport [Evidence IEA,IEA]; GO_process: GO:0006865 - amino acid transport [Evidence IDA] [PMID 10654085]; GO_process: GO:0006865 - amino acid transport [Evidence IMP] [PMID 14697254]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IDA] [PMID 10654085]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; Agp3p 1587148 AGP3 30037194 AGP3 Sugiyamaella lignohabitans Agp3p XP_018734728.1 1586375 R 796027 CDS AWJ20_501 30037205 complement(1587373..1588071) A 1 NC_031672.1 Low-affinity amino acid permease; may act to supply the cell with amino acids as nitrogen source in nitrogen-poor conditions; transcription is induced under conditions of sulfur limitation; plays a role in regulating Ty1 transposition; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence ISS] [PMID 10654085]; GO_function: GO:0015171 - amino acid transmembrane transporter activity [Evidence IEA]; GO_function: GO:0015171 - amino acid transmembrane transporter activity [Evidence IDA] [PMID 10654085]; GO_function: GO:0015171 - amino acid transmembrane transporter activity [Evidence IMP] [PMID 14697254]; GO_process: GO:0003333 - amino acid transmembrane transport [Evidence IEA]; GO_process: GO:0006865 - amino acid transport [Evidence IEA,IEA]; GO_process: GO:0006865 - amino acid transport [Evidence IDA] [PMID 10654085]; GO_process: GO:0006865 - amino acid transport [Evidence IMP] [PMID 14697254]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IDA] [PMID 10654085]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; Agp3p 1588071 AGP3 30037205 AGP3 Sugiyamaella lignohabitans Agp3p XP_018734729.1 1587373 R 796027 CDS AWJ20_502 30037216 1591352..1591900 A 1 NC_031672.1 Protein that mediates sphingolipid homeostasis; evolutionarily conserved, required for resistance to agents that induce unfolded protein response; Orm1p and Orm2p together control membrane biogenesis by coordinating lipid homeostasis with protein quality control; ORM1 has a paralog, ORM2, that arose from the whole genome duplication; GO_component: GO:0035339 - SPOTS complex [Evidence IDA] [PMID 20182505]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 14562095]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 20182505]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0090156 - cellular sphingolipid homeostasis [Evidence IMP] [PMID 20182505]; GO_process: GO:0090155 - negative regulation of sphingolipid biosynthetic process [Evidence IGI,IMP,IPI] [PMID 20182505]; GO_process: GO:0006986 - response to unfolded protein [Evidence IMP,ISS] [PMID 12093374]; Orm1p 1591900 ORM1 30037216 ORM1 Sugiyamaella lignohabitans Orm1p XP_018734730.1 1591352 D 796027 CDS AWJ20_503 30037227 1592571..1593521 A 1 NC_031672.1 Protein required for 20S pre-rRNA processing; involved in processing of the 20S pre-rRNA at site D to generate mature 18S rRNA; green fluorescent protein (GFP)-fusion protein localizes to both the cytoplasm and the nucleus; relative distribution to the nucleus increases upon DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0030490 - maturation of SSU-rRNA [Evidence IMP] [PMID 19806183]; GO_process: GO:0006364 - rRNA processing [Evidence IEA,IEA]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; Tsr3p 1593521 TSR3 30037227 TSR3 Sugiyamaella lignohabitans Tsr3p XP_018734731.1 1592571 D 796027 CDS AWJ20_504 30037238 complement(1594490..1596877) A 1 NC_031672.1 Effector of Rab GTPase Sec4p; forms a complex with Sec4p and t-SNARE Sec9p; involved in exocytosis and docking and fusion of post-Golgi vesicles with plasma membrane; homolog of Drosophila lgl tumor suppressor; SRO7 has a paralog, SRO77, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 10402465]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 10402465]; GO_function: GO:0017137 - Rab GTPase binding [Evidence IDA] [PMID 16390997]; GO_function: GO:0000149 - SNARE binding [Evidence IPI] [PMID 15964280]; GO_process: GO:0006893 - Golgi to plasma membrane transport [Evidence IGI,IPI] [PMID 10402465]; GO_process: GO:0030010 - establishment of cell polarity [Evidence IPI] [PMID 15964280]; GO_process: GO:0006887 - exocytosis [Evidence IEA]; GO_process: GO:0006887 - exocytosis [Evidence IGI] [PMID 10402465]; GO_process: GO:0007264 - small GTPase mediated signal transduction [Evidence IPI] [PMID 16390997]; Sro7p 1596877 SRO7 30037238 SRO7 Sugiyamaella lignohabitans Sro7p XP_018734732.1 1594490 R 796027 CDS AWJ20_505 30037249 1597359..1598723 A 1 NC_031672.1 DNA ligase required for nonhomologous end-joining (NHEJ); forms stable heterodimer with required cofactor Lif1p, interacts with Nej1p; involved in meiosis, not essential for vegetative growth; GO_component: GO:0032807 - DNA ligase IV complex [Evidence IPI] [PMID 17567543]; GO_component: GO:0000790 - nuclear chromatin [Evidence IPI] [PMID 10679327]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0003910 - DNA ligase (ATP) activity [Evidence IEA,IEA]; GO_function: GO:0003910 - DNA ligase (ATP) activity [Evidence IDA] [PMID 9242411]; GO_function: GO:0003910 - DNA ligase (ATP) activity [Evidence IDA,IMP] [PMID 9271115]; GO_function: GO:0003909 - DNA ligase activity [Evidence IEA]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006266 - DNA ligation [Evidence IBA]; GO_process: GO:0051103 - DNA ligation involved in DNA repair [Evidence IEA]; GO_process: GO:0006310 - DNA recombination [Evidence IEA,IEA]; GO_process: GO:0006281 - DNA repair [Evidence IEA,IEA]; GO_process: GO:0006260 - DNA replication [Evidence IEA,IEA]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0006303 - double-strand break repair via nonhomologous end joining [Evidence IDA] [PMID 15342630]; GO_process: GO:0006303 - double-strand break repair via nonhomologous end joining [Evidence IMP] [PMID 9242411]; GO_process: GO:0001302 - replicative cell aging [Evidence IGI] [PMID 18627461]; DNA ligase (ATP) DNL4 1598723 DNL4 30037249 DNL4 Sugiyamaella lignohabitans DNA ligase (ATP) DNL4 XP_018734733.1 1597359 D 796027 CDS AWJ20_506 30037260 1599004..1600296 A 1 NC_031672.1 DNA ligase required for nonhomologous end-joining (NHEJ); forms stable heterodimer with required cofactor Lif1p, interacts with Nej1p; involved in meiosis, not essential for vegetative growth; GO_component: GO:0032807 - DNA ligase IV complex [Evidence IPI] [PMID 17567543]; GO_component: GO:0000790 - nuclear chromatin [Evidence IPI] [PMID 10679327]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0003910 - DNA ligase (ATP) activity [Evidence IEA,IEA]; GO_function: GO:0003910 - DNA ligase (ATP) activity [Evidence IDA] [PMID 9242411]; GO_function: GO:0003910 - DNA ligase (ATP) activity [Evidence IDA,IMP] [PMID 9271115]; GO_function: GO:0003909 - DNA ligase activity [Evidence IEA]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006266 - DNA ligation [Evidence IBA]; GO_process: GO:0051103 - DNA ligation involved in DNA repair [Evidence IEA]; GO_process: GO:0006310 - DNA recombination [Evidence IEA,IEA]; GO_process: GO:0006281 - DNA repair [Evidence IEA,IEA]; GO_process: GO:0006260 - DNA replication [Evidence IEA,IEA]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0006303 - double-strand break repair via nonhomologous end joining [Evidence IDA] [PMID 15342630]; GO_process: GO:0006303 - double-strand break repair via nonhomologous end joining [Evidence IMP] [PMID 9242411]; GO_process: GO:0001302 - replicative cell aging [Evidence IGI] [PMID 18627461]; DNA ligase (ATP) DNL4 1600296 DNL4 30037260 DNL4 Sugiyamaella lignohabitans DNA ligase (ATP) DNL4 XP_018734734.1 1599004 D 796027 CDS AWJ20_507 30037271 complement(1600359..1602584) A 1 NC_031672.1 Subunit of the SEA (Seh1-associated) complex; SEA is a coatomer-related complex that associates dynamically with the vacuole; has an N-terminal beta-propeller fold and a C-terminal RING motif; promoter contains multiple GCN4 binding sites; GO_component: GO:0035859 - Seh1-associated complex [Evidence IDA] [PMID 21454883]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0097042 - extrinsic component of fungal-type vacuolar membrane [Evidence IDA] [PMID 21454883]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Sea4p 1602584 SEA4 30037271 SEA4 Sugiyamaella lignohabitans Sea4p XP_018734735.1 1600359 R 796027 CDS AWJ20_508 30037282 1607474..1609489 A 1 NC_031672.1 uncharacterized protein 1609489 30037282 AWJ20_508 Sugiyamaella lignohabitans uncharacterized protein XP_018734736.1 1607474 D 796027 CDS AWJ20_509 30037293 1609577..1612573 A 1 NC_031672.1 CORVET complex membrane-binding subunit VPS8 1612573 VPS8 30037293 VPS8 Sugiyamaella lignohabitans CORVET complex membrane-binding subunit VPS8 XP_018734737.1 1609577 D 796027 CDS AWJ20_510 30037305 complement(1612861..1614036) A 1 NC_031672.1 hypothetical protein; localizes to the cytoplasm and nucleus; overexpression affects protein trafficking through the endocytic pathway; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 21777356]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 21777356]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0004121 - cystathionine beta-lyase activity [Evidence ISS] [PMID 10821189]; GO_function: GO:0016829 - lyase activity [Evidence IEA]; GO_function: GO:0030170 - pyridoxal phosphate binding [Evidence IEA]; GO_process: GO:0006790 - sulfur compound metabolic process [Evidence ISS] [PMID 10821189]; putative cystathionine beta-lyase 1614036 30037305 AWJ20_510 Sugiyamaella lignohabitans putative cystathionine beta-lyase XP_018734738.1 1612861 R 796027 CDS AWJ20_511 30037316 complement(1614475..1615026) A 1 NC_031672.1 Protein involved in mRNA turnover and ribosome assembly; required at post-transcriptional step for efficient retrotransposition; localizes to the nucleolus; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 19797078]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 19797079]; GO_component: GO:0005654 - nucleoplasm [Evidence IDA] [PMID 19797079]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 11583614]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 17443350]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 19797079]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 23212245]; GO_function: GO:0070180 - large ribosomal subunit rRNA binding [Evidence ISA] [PMID 19346338]; GO_process: GO:0000956 - nuclear-transcribed mRNA catabolic process [Evidence IMP] [PMID 10471698]; GO_process: GO:0006364 - rRNA processing [Evidence IMP] [PMID 12837249]; GO_process: GO:0000027 - ribosomal large subunit assembly [Evidence IGI,IMP] [PMID 19797079]; GO_process: GO:0042273 - ribosomal large subunit biogenesis [Evidence IMP,IPI] [PMID 11583614]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA,IEA]; Mrt4p 1615026 MRT4 30037316 MRT4 Sugiyamaella lignohabitans Mrt4p XP_018734739.1 1614475 R 796027 CDS AWJ20_512 30037327 1615789..1616286 A 1 NC_031672.1 uncharacterized protein 1616286 30037327 AWJ20_512 Sugiyamaella lignohabitans uncharacterized protein XP_018734740.1 1615789 D 796027 CDS AWJ20_513 30037338 complement(1616754..1617155) A 1 NC_031672.1 Uracil phosphoribosyltransferase; synthesizes UMP from uracil; involved in the pyrimidine salvage pathway; GO_component: GO:0005622 - intracellular [Evidence IC] [PMID 2189783]; GO_function: GO:0005525 - GTP binding [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA]; GO_function: GO:0004845 - uracil phosphoribosyltransferase activity [Evidence IEA]; GO_function: GO:0004845 - uracil phosphoribosyltransferase activity [Evidence IDA] [PMID 2189783]; GO_process: GO:0044206 - UMP salvage [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0008655 - pyrimidine-containing compound salvage [Evidence IDA] [PMID 2189783]; uracil phosphoribosyltransferase 1617155 FUR1 30037338 FUR1 Sugiyamaella lignohabitans uracil phosphoribosyltransferase XP_018734741.1 1616754 R 796027 CDS AWJ20_514 30037349 complement(1617998..1622395) A 1 NC_031672.1 hypothetical protein; mediates sensitivity to salt stress; interacts physically with the splicing factor Msl1p and also displays genetic interaction with MSL1; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0009651 - response to salt stress [Evidence IMP] [PMID 11816027]; GO_process: GO:0006950 - response to stress [Evidence IEA]; Nst1p 1622395 NST1 30037349 NST1 Sugiyamaella lignohabitans Nst1p XP_018734742.1 1617998 R 796027 CDS AWJ20_515 30037360 complement(1627969..1631133) A 1 NC_031672.1 ATP-dependent DNA helicase SGS1 1631133 SGS1 30037360 SGS1 Sugiyamaella lignohabitans ATP-dependent DNA helicase SGS1 XP_018734743.1 1627969 R 796027 CDS AWJ20_516 30037371 complement(1635432..1637075) A 1 NC_031672.1 Mitochondrial aldehyde dehydrogenase; required for growth on ethanol and conversion of acetaldehyde to acetate; phosphorylated; activity is K+ dependent; utilizes NADP+ or NAD+ equally as coenzymes; expression is glucose repressed; can substitute for cytosolic NADP-dependent aldehyde dehydrogenase when directed to the cytosol; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA]; GO_component: GO:0042645 - mitochondrial nucleoid [Evidence IDA] [PMID 10869431]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 11502169]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0004029 - aldehyde dehydrogenase (NAD) activity [Evidence IDA] [PMID 9473035]; GO_function: GO:0004029 - aldehyde dehydrogenase (NAD) activity [Evidence IMP] [PMID 9675847]; GO_function: GO:0004030 - aldehyde dehydrogenase [NAD(P)+] activity [Evidence IEA]; GO_function: GO:0004030 - aldehyde dehydrogenase [NAD(P)+] activity [Evidence IDA] [PMID 9473035]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0016620 - oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor [Evidence IEA]; GO_process: GO:0006740 - NADPH regeneration [Evidence IGI] [PMID 19158096]; GO_process: GO:0019413 - acetate biosynthetic process [Evidence IGI] [PMID 10919763]; GO_process: GO:0006067 - ethanol metabolic process [Evidence IMP] [PMID 9675847]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0006090 - pyruvate metabolic process [Evidence IMP] [PMID 10409655]; aldehyde dehydrogenase (NADP(+)) ALD4 1637075 ALD4 30037371 ALD4 Sugiyamaella lignohabitans aldehyde dehydrogenase (NADP(+)) ALD4 XP_018734744.1 1635432 R 796027 CDS AWJ20_517 30037382 complement(1638052..1638807) A 1 NC_031672.1 uncharacterized protein 1638807 30037382 AWJ20_517 Sugiyamaella lignohabitans uncharacterized protein XP_018734745.1 1638052 R 796027 CDS AWJ20_518 30037393 complement(1641288..1643141) A 1 NC_031672.1 Acetolactate synthase; catalyses the first common step in isoleucine and valine biosynthesis and is the target of several classes of inhibitors, localizes to the mitochondria; expression of the gene is under general amino acid control; GO_component: GO:0005948 - acetolactate synthase complex [Evidence IDA] [PMID 10213630]; GO_component: GO:0005948 - acetolactate synthase complex [Evidence ISS] [PMID 2989783]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0003984 - acetolactate synthase activity [Evidence IEA,IEA]; GO_function: GO:0003984 - acetolactate synthase activity [Evidence IDA] [PMID 10213630]; GO_function: GO:0003984 - acetolactate synthase activity [Evidence ISS] [PMID 2989783]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO_function: GO:0050660 - flavin adenine dinucleotide binding [Evidence IDA] [PMID 15709745]; GO_function: GO:0000287 - magnesium ion binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0030976 - thiamine pyrophosphate binding [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0009082 - branched-chain amino acid biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0009082 - branched-chain amino acid biosynthetic process [Evidence IDA,IMP] [PMID 2406721]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0009097 - isoleucine biosynthetic process [Evidence IEA]; GO_process: GO:0009099 - valine biosynthetic process [Evidence IEA]; acetolactate synthase catalytic subunit 1643141 ILV2 30037393 ILV2 Sugiyamaella lignohabitans acetolactate synthase catalytic subunit XP_018734746.1 1641288 R 796027 CDS AWJ20_519 30037404 1642528..1642827 A 1 NC_031672.1 uncharacterized protein 1642827 30037404 AWJ20_519 Sugiyamaella lignohabitans uncharacterized protein XP_018734747.1 1642528 D 796027 CDS AWJ20_520 30037416 complement(1652487..1654103) A 1 NC_031672.1 Splicing factor; component of the U4/U6-U5 snRNP complex; GO_component: GO:0046540 - U4/U6 x U5 tri-snRNP complex [Evidence IDA] [PMID 10377396]; GO_component: GO:0046540 - U4/U6 x U5 tri-snRNP complex [Evidence IDA] [PMID 10449419]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005681 - spliceosomal complex [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008380 - RNA splicing [Evidence IEA,IEA]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0000398 - mRNA splicing, via spliceosome [Evidence IPI] [PMID 10377396]; GO_process: GO:0034247 - snoRNA splicing [Evidence IMP] [PMID 8202378]; Prp4p 1654103 PRP4 30037416 PRP4 Sugiyamaella lignohabitans Prp4p XP_018734748.1 1652487 R 796027 CDS AWJ20_521 30037427 complement(1655819..1658062) A 1 NC_031672.1 Subunit of the HDA1 histone deacetylase complex; possibly tetrameric trichostatin A-sensitive class II histone deacetylase complex contains Hda1p homodimer and an Hda2p-Hda3p heterodimer; required for the activity of the complex; relocalizes to the cytosol in response to hypoxia; similar to Hda2p; GO_component: GO:0070823 - HDA1 complex [Evidence IEA]; GO_component: GO:0070823 - HDA1 complex [Evidence IDA,IPI] [PMID 11287668]; GO_component: GO:0070823 - HDA1 complex [Evidence IDA] [PMID 8663039]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 22932476]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22932476]; GO_function: GO:0003677 - DNA binding [Evidence IDA] [PMID 19573535]; GO_function: GO:0003682 - chromatin binding [Evidence IDA] [PMID 16415367]; GO_function: GO:0004407 - histone deacetylase activity [Evidence IEA]; GO_function: GO:0004407 - histone deacetylase activity [Evidence IDA] [PMID 19573535]; GO_process: GO:0016568 - chromatin modification [Evidence IEA]; GO_process: GO:0007059 - chromosome segregation [Evidence IMP] [PMID 16415367]; GO_process: GO:0031047 - gene silencing by RNA [Evidence IMP] [PMID 18022365]; GO_process: GO:0010978 - gene silencing involved in chronological cell aging [Evidence IMP] [PMID 18022365]; GO_process: GO:0016575 - histone deacetylation [Evidence IDA,IMP] [PMID 11287668]; GO_process: GO:0016575 - histone deacetylation [Evidence IDA,IMP] [PMID 8663039]; GO_process: GO:0000122 - negative regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 11287668]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Hda3p 1658062 HDA3 30037427 HDA3 Sugiyamaella lignohabitans Hda3p XP_018734749.1 1655819 R 796027 CDS AWJ20_522 30037438 1658919..1659917 A 1 NC_031672.1 Subunit of heterodimeric nuclear SUMO activating enzyme E1 with Uba2p; activates Smt3p (SUMO) before its conjugation to proteins (sumoylation), which may play a role in protein targeting; essential for viability; relocalizes to the cytosol in response to hypoxia; GO_component: GO:0031510 - SUMO activating enzyme complex [Evidence IPI] [PMID 9312010]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 22932476]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22932476]; GO_function: GO:0019948 - SUMO activating enzyme activity [Evidence IDA] [PMID 9312010]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0016925 - protein sumoylation [Evidence IDA] [PMID 9312010]; E1 ubiquitin-activating protein AOS1 1659917 AOS1 30037438 AOS1 Sugiyamaella lignohabitans E1 ubiquitin-activating protein AOS1 XP_018734750.1 1658919 D 796027 CDS AWJ20_523 30037449 complement(1660167..1661954) A 1 NC_031672.1 GTPase-activating protein, stimulates the GTPase activity of Sar1p; component of the Sec23p-Sec24p heterodimer of the COPII vesicle coat, involved in ER to Golgi transport; substrate of Ubp3/Bre5 complex; ubiquitylated by Ub-ligase Rsp5p; proteasome-mediated degradation of Sec23p is regulated by Cdc48p; GO_component: GO:0030127 - COPII vesicle coat [Evidence IEA]; GO_component: GO:0030127 - COPII vesicle coat [Evidence IDA] [PMID 8004676]; GO_component: GO:0012507 - ER to Golgi transport vesicle membrane [Evidence IEA]; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0031410 - cytoplasmic vesicle [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0005096 - GTPase activator activity [Evidence IDA] [PMID 8451644]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0006888 - ER to Golgi vesicle-mediated transport [Evidence IEA]; GO_process: GO:0006886 - intracellular protein transport [Evidence IEA]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0003400 - regulation of COPII vesicle coating [Evidence IDA] [PMID 8451644]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IEA]; GTPase-activating protein SEC23 1661954 SEC23 30037449 SEC23 Sugiyamaella lignohabitans GTPase-activating protein SEC23 XP_018734751.1 1660167 R 796027 CDS AWJ20_524 30037460 1668738..1671815 A 1 NC_031672.1 Arf family guanine nucleotide exchange factor GEA2 1671815 GEA2 30037460 GEA2 Sugiyamaella lignohabitans Arf family guanine nucleotide exchange factor GEA2 XP_018734752.1 1668738 D 796027 CDS AWJ20_525 30037471 1672782..1673459 A 1 NC_031672.1 uncharacterized protein 1673459 30037471 AWJ20_525 Sugiyamaella lignohabitans uncharacterized protein XP_018734753.1 1672782 D 796027 CDS AWJ20_526 30037482 join(1680377..1680432,1681436..1683608) A 1 NC_031672.1 uncharacterized protein 1683608 30037482 AWJ20_526 Sugiyamaella lignohabitans uncharacterized protein XP_018734754.1 1680377 D 796027 CDS AWJ20_527 30037493 1684978..1685601 A 1 NC_031672.1 Protein component of the small (40S) ribosomal subunit; homologous to mammalian ribosomal protein S6, no bacterial homolog; RPS6A has a paralog, RPS6B, that arose from the whole genome duplication; GO_component: GO:0030686 - 90S preribosome [Evidence IDA] [PMID 12150911]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0022627 - cytosolic small ribosomal subunit [Evidence IDA] [PMID 6814480]; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA,IEA]; GO_component: GO:0032040 - small-subunit processome [Evidence IDA] [PMID 15590835]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IDA] [PMID 6814480]; GO_process: GO:0002181 - cytoplasmic translation [Evidence IC] [PMID 6814480]; GO_process: GO:0000462 - maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IGI] [PMID 16246728]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0042274 - ribosomal small subunit biogenesis [Evidence IBA]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; GO_process: GO:0006412 - translation [Evidence IEA]; ribosomal 40S subunit protein S6A 1685601 RPS6A 30037493 RPS6A Sugiyamaella lignohabitans ribosomal 40S subunit protein S6A XP_018734755.1 1684978 D 796027 CDS AWJ20_528 30037504 1687964..1688881 A 1 NC_031672.1 Penta-EF-hand protein; required for polar bud growth and cell wall abscission; binds calcium and zinc with different affinity; localizes to bud site in G1, bud neck in G2; binds to Sec31p and modulates COPII coat assembly; GO_component: GO:0005935 - cellular bud neck [Evidence IEA]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 17640275]; GO_component: GO:0005934 - cellular bud tip [Evidence IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 22792405]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0030427 - site of polarized growth [Evidence IDA] [PMID 17640275]; GO_function: GO:0005509 - calcium ion binding [Evidence IEA]; GO_function: GO:0005509 - calcium ion binding [Evidence IDA] [PMID 17640275]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IDA] [PMID 17640275]; GO_process: GO:0007120 - axial cellular bud site selection [Evidence IMP] [PMID 17640275]; GO_process: GO:0007121 - bipolar cellular bud site selection [Evidence IMP] [PMID 17640275]; GO_process: GO:0003400 - regulation of COPII vesicle coating [Evidence IDA,IMP,IPI] [PMID 22792405]; Pef1p 1688881 PEF1 30037504 PEF1 Sugiyamaella lignohabitans Pef1p XP_018734756.1 1687964 D 796027 CDS AWJ20_529 30037515 complement(1692627..1693673) A 1 NC_031672.1 NADPH-dependent alpha-keto amide reductase; reduces aromatic alpha-keto amides, aliphatic alpha-keto esters, and aromatic alpha-keto esters; member of the aldo-keto reductase (AKR) family; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 16622836]; GO_function: GO:0004032 - alditol:NADP+ 1-oxidoreductase activity [Evidence IDA,ISS] [PMID 11306085]; GO_function: GO:0004033 - aldo-keto reductase (NADP) activity [Evidence IDA] [PMID 17140678]; GO_function: GO:0051268 - alpha-keto amide reductase activity [Evidence IDA] [PMID 15564669]; GO_function: GO:0051269 - alpha-keto ester reductase activity [Evidence IDA] [PMID 15564669]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_process: GO:0043603 - cellular amide metabolic process [Evidence IDA] [PMID 15564669]; GO_process: GO:0006725 - cellular aromatic compound metabolic process [Evidence IDA] [PMID 16268655]; GO_process: GO:0042180 - cellular ketone metabolic process [Evidence IDA] [PMID 17140678]; GO_process: GO:0034599 - cellular response to oxidative stress [Evidence IGI] [PMID 17919749]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; aldo-keto reductase superfamily protein 1693673 30037515 AWJ20_529 Sugiyamaella lignohabitans aldo-keto reductase superfamily protein XP_018734757.1 1692627 R 796027 CDS AWJ20_530 30037526 complement(1695052..1695834) A 1 NC_031672.1 uncharacterized protein 1695834 30037526 AWJ20_530 Sugiyamaella lignohabitans uncharacterized protein XP_018734758.1 1695052 R 796027 CDS AWJ20_531 30037537 1698515..1699027 A 1 NC_031672.1 Membrane-associated mitochondrial ribosome receptor; forms a complex with Mdm38p that may facilitate recruitment of mRNA-specific translational activators to ribosomes; possible role in protein export from the matrix to inner membrane; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IDA] [PMID 11381092]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0043022 - ribosome binding [Evidence IDA] [PMID 16601683]; GO_process: GO:0007007 - inner mitochondrial membrane organization [Evidence IDA] [PMID 11381092]; GO_process: GO:0097033 - mitochondrial respiratory chain complex III biogenesis [Evidence IGI,IMP] [PMID 20427570]; GO_process: GO:0097034 - mitochondrial respiratory chain complex IV biogenesis [Evidence IGI,IMP] [PMID 20427570]; GO_process: GO:0070131 - positive regulation of mitochondrial translation [Evidence IGI] [PMID 20427570]; GO_process: GO:0032979 - protein insertion into mitochondrial membrane from inner side [Evidence IMP] [PMID 16601683]; Mba1p 1699027 MBA1 30037537 MBA1 Sugiyamaella lignohabitans Mba1p XP_018734759.1 1698515 D 796027 CDS AWJ20_532 30037548 1700227..1701696 A 1 NC_031672.1 Component of the septin ring that is required for cytokinesis; septins are GTP-binding proteins that assemble into rod-like hetero-oligomers that can associate with other rods to form filaments; septin rings at the mother-bud neck act as scaffolds for recruiting cell division factors and as barriers to prevent diffusion of specific proteins between mother and daughter cells; GO_component: GO:0005935 - cellular bud neck [Evidence IEA]; GO_component: GO:0000144 - cellular bud neck septin ring [Evidence IDA] [PMID 3316985]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005937 - mating projection [Evidence IDA] [PMID 18552279]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005628 - prospore membrane [Evidence IDA] [PMID 24390141]; GO_component: GO:0031105 - septin complex [Evidence IEA]; GO_component: GO:0031105 - septin complex [Evidence IDA] [PMID 18550837]; GO_component: GO:0031105 - septin complex [Evidence IPI] [PMID 9813094]; GO_component: GO:0032160 - septin filament array [Evidence IDA] [PMID 15282341]; GO_function: GO:0005545 - 1-phosphatidylinositol binding [Evidence IDA] [PMID 12665577]; GO_function: GO:0005525 - GTP binding [Evidence IEA,IEA]; GO_function: GO:0005525 - GTP binding [Evidence IDA] [PMID 14597621]; GO_function: GO:0003924 - GTPase activity [Evidence IDA] [PMID 14993234]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0032947 - protein complex scaffold [Evidence IMP] [PMID 9442111]; GO_function: GO:0005198 - structural molecule activity [Evidence IDA] [PMID 18550837]; GO_process: GO:0007049 - cell cycle [Evidence IEA,IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0030011 - maintenance of cell polarity [Evidence IMP] [PMID 10882120]; GO_process: GO:0045860 - positive regulation of protein kinase activity [Evidence IDA] [PMID 14527412]; GO_process: GO:0000921 - septin ring assembly [Evidence IDA] [PMID 12636916]; GO_process: GO:0000921 - septin ring assembly [Evidence IMP] [PMID 14993234]; septin CDC12 1701696 CDC12 30037548 CDC12 Sugiyamaella lignohabitans septin CDC12 XP_018734760.1 1700227 D 796027 CDS AWJ20_533 30037559 1709731..1711155 A 1 NC_031672.1 Nuclear protein that negatively regulates pseudohyphal differentiation; plays a regulatory role in the cyclic AMP (cAMP)-dependent protein kinase (PKA) signal transduction pathway; relocalizes to the cytosol in response to hypoxia; SOK2 has a paralog, PHD1, that arose from the whole genome duplication; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 22932476]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22932476]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19111667]; GO_function: GO:0003700 - sequence-specific DNA binding transcription factor activity [Evidence IEA]; GO_function: GO:0003700 - sequence-specific DNA binding transcription factor activity [Evidence ISS] [PMID 8524252]; GO_process: GO:0007124 - pseudohyphal growth [Evidence IMP] [PMID 11046133]; GO_process: GO:0007124 - pseudohyphal growth [Evidence IMP] [PMID 8524252]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA,IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Sok2p 1711155 SOK2 30037559 SOK2 Sugiyamaella lignohabitans Sok2p XP_018734761.1 1709731 D 796027 CDS AWJ20_534 30037570 complement(1713513..1718273) A 1 NC_031672.1 Subunit of the HIR complex; a nucleosome assembly complex involved in regulation of histone gene transcription; involved in position-dependent gene silencing and nucleosome reassembly; ortholog of human CABIN1 protein; GO_component: GO:0000417 - HIR complex [Evidence IDA,IPI] [PMID 16264190]; GO_component: GO:0000417 - HIR complex [Evidence IDA] [PMID 16303565]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9001207]; GO_function: GO:0003677 - DNA binding [Evidence IDA] [PMID 16264190]; GO_function: GO:0031491 - nucleosome binding [Evidence IMP] [PMID 16264190]; GO_function: GO:0003714 - transcription corepressor activity [Evidence IMP] [PMID 9001207]; GO_process: GO:0006336 - DNA replication-independent nucleosome assembly [Evidence IDA] [PMID 16264190]; GO_process: GO:0006336 - DNA replication-independent nucleosome assembly [Evidence IDA] [PMID 16303565]; GO_process: GO:0000083 - regulation of transcription involved in G1/S transition of mitotic cell cycle [Evidence IMP] [PMID 1406694]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006368 - transcription elongation from RNA polymerase II promoter [Evidence IGI] [PMID 16449659]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Hir3p 1718273 HIR3 30037570 HIR3 Sugiyamaella lignohabitans Hir3p XP_018734762.1 1713513 R 796027 CDS AWJ20_535 30037578 1719924..1721315 A 1 NC_031672.1 uncharacterized protein 1721315 30037578 AWJ20_535 Sugiyamaella lignohabitans uncharacterized protein XP_018734763.1 1719924 D 796027 CDS AWJ20_536 30037579 complement(1721410..1721868) A 1 NC_031672.1 Exopolyphosphatase; hydrolyzes inorganic polyphosphate (poly P) into Pi residues; located in the cytosol, plasma membrane, and mitochondrial matrix; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 7860598]; GO_component: GO:0005829 - cytosol [Evidence TAS] [PMID 12689631]; GO_component: GO:0005759 - mitochondrial matrix [Evidence TAS] [PMID 12689631]; GO_component: GO:0005886 - plasma membrane [Evidence TAS] [PMID 12689631]; GO_function: GO:0004309 - exopolyphosphatase activity [Evidence IEA]; GO_function: GO:0004309 - exopolyphosphatase activity [Evidence IDA] [PMID 17215253]; GO_function: GO:0004309 - exopolyphosphatase activity [Evidence IDA,IMP] [PMID 7860598]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA,IEA]; GO_function: GO:0030145 - manganese ion binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016462 - pyrophosphatase activity [Evidence IEA]; GO_process: GO:0006798 - polyphosphate catabolic process [Evidence IMP] [PMID 7860598]; GO_process: GO:0006798 - polyphosphate catabolic process [Evidence IDA] [PMID 8157625]; Ppx1p 1721868 PPX1 30037579 PPX1 Sugiyamaella lignohabitans Ppx1p XP_018734764.1 1721410 R 796027 CDS AWJ20_537 30037580 join(1722983..1723010,1723074..1724122) A 1 NC_031672.1 Homoserine dehydrogenase (L-homoserine:NADP oxidoreductase); dimeric enzyme that catalyzes the third step in the common pathway for methionine and threonine biosynthesis; enzyme has nucleotide-binding, dimerization and catalytic regions; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0050661 - NADP binding [Evidence IEA]; GO_function: GO:0004412 - homoserine dehydrogenase activity [Evidence IEA,IEA]; GO_function: GO:0004412 - homoserine dehydrogenase activity [Evidence IDA] [PMID 11341915]; GO_function: GO:0004412 - homoserine dehydrogenase activity [Evidence ISS] [PMID 8500624]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_process: GO:0009082 - branched-chain amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0006520 - cellular amino acid metabolic process [Evidence IEA]; GO_process: GO:0009090 - homoserine biosynthetic process [Evidence IMP] [PMID 4380684]; GO_process: GO:0009097 - isoleucine biosynthetic process [Evidence IEA]; GO_process: GO:0009086 - methionine biosynthetic process [Evidence IEA]; GO_process: GO:0009086 - methionine biosynthetic process [Evidence IMP] [PMID 4380684]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0009088 - threonine biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0009088 - threonine biosynthetic process [Evidence IMP] [PMID 4380684]; homoserine dehydrogenase 1724122 HOM6 30037580 HOM6 Sugiyamaella lignohabitans homoserine dehydrogenase XP_018734765.1 1722983 D 796027 CDS AWJ20_538 30037581 1727382..1728041 A 1 NC_031672.1 Phosphorelay intermediate protein; phosphorylated by the plasma membrane sensor Sln1p in response to osmotic stress and then in turn phosphorylates the response regulators Ssk1p in the cytosol and Skn7p in the nucleus; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14665464]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14665464]; GO_function: GO:0043424 - protein histidine kinase binding [Evidence IPI] [PMID 8808622]; GO_function: GO:0004871 - signal transducer activity [Evidence IEA]; GO_function: GO:0016772 - transferase activity, transferring phosphorus-containing groups [Evidence IDA] [PMID 8808622]; GO_process: GO:0007234 - osmosensory signaling via phosphorelay pathway [Evidence IDA,IMP] [PMID 8808622]; GO_process: GO:0000160 - phosphorelay signal transduction system [Evidence IEA,IEA]; Ypd1p 1728041 YPD1 30037581 YPD1 Sugiyamaella lignohabitans Ypd1p XP_018734766.1 1727382 D 796027 CDS AWJ20_539 30037582 complement(1728237..1730078) A 1 NC_031672.1 Protein with DNA-dependent ATPase and ssDNA annealing activities; involved in maintenance of genome; interacts functionally with DNA polymerase delta; homolog of human Werner helicase interacting protein (WHIP); forms nuclear foci upon DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0008047 - enzyme activator activity [Evidence IDA] [PMID 16251400]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_function: GO:0043142 - single-stranded DNA-dependent ATPase activity [Evidence IDA] [PMID 11459965]; GO_function: GO:0043142 - single-stranded DNA-dependent ATPase activity [Evidence IDA] [PMID 16251400]; GO_function: GO:0043130 - ubiquitin binding [Evidence ISS] [PMID 17550899]; GO_process: GO:0006281 - DNA repair [Evidence IEA]; GO_process: GO:0006260 - DNA replication [Evidence IEA]; GO_process: GO:0033567 - DNA replication, Okazaki fragment processing [Evidence IDA] [PMID 16251400]; GO_process: GO:0000733 - DNA strand renaturation [Evidence IDA] [PMID 11459965]; GO_process: GO:0006952 - defense response [Evidence IEA]; GO_process: GO:0006282 - regulation of DNA repair [Evidence IGI] [PMID 16809783]; ssDNA-dependent ATPase MGS1 1730078 MGS1 30037582 MGS1 Sugiyamaella lignohabitans ssDNA-dependent ATPase MGS1 XP_018734767.1 1728237 R 796027 CDS AWJ20_540 30037584 1731318..1735556 A 1 NC_031672.1 GTPase-activating protein (GAP), subunit of SEA and Iml1p complexes; SEA (Seh1-associated) complex is a coatomer-related complex that associates dynamically with the vacuole; Iml1p complex (Iml1p-Npr2p-Npr3p) is required for non-nitrogen-starvation (NNS)-induced autophagy; localized to either pre-autophagosomal structures (PAS) or non-PAS structures during NNS-induced autophagy; GO_component: GO:1990130 - Iml1 complex [Evidence IDA] [PMID 21900499]; GO_component: GO:0035859 - Seh1-associated complex [Evidence IDA] [PMID 21454883]; GO_component: GO:0097042 - extrinsic component of fungal-type vacuolar membrane [Evidence IDA] [PMID 21454883]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 14562095]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0005096 - GTPase activator activity [Evidence IDA,IMP,IPI] [PMID 23716719]; GO_process: GO:0035556 - intracellular signal transduction [Evidence IEA]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:2000785 - regulation of autophagic vacuole assembly [Evidence IMP] [PMID 21900499]; GO_process: GO:0006810 - transport [Evidence IEA]; Iml1p 1735556 IML1 30037584 IML1 Sugiyamaella lignohabitans Iml1p XP_018734768.1 1731318 D 796027 CDS AWJ20_541 30037585 1738943..1740169 A 1 NC_031672.1 hypothetical protein; weak sequence similarity to bis (5'-nucleotidyl)-tetraphosphatases; (GFP)-fusion protein localizes to the vacuole; null mutant is highly sensitive to azaserine and resistant to sodium-O-vandate; GO_component: GO:0000324 - fungal-type vacuole [Evidence IDA] [PMID 14562095]; GO_component: GO:0000324 - fungal-type vacuole [Evidence IDA] [PMID 23708375]; GO_component: GO:0005773 - vacuole [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA,IEA]; GO_function: GO:0016791 - phosphatase activity [Evidence ISS] [PMID 10618406]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0008152 - metabolic process [Evidence IEA,IEA]; putative serine/threonine-protein phosphatase 1740169 30037585 AWJ20_541 Sugiyamaella lignohabitans putative serine/threonine-protein phosphatase XP_018734769.1 1738943 D 796027 CDS AWJ20_542 30037586 complement(1741108..1742769) A 1 NC_031672.1 Subunit of Elongator complex; Elongator is required for modification of wobble nucleosides in tRNA; exhibits histone acetyltransferase activity that is directed to histones H3 and H4; disruption confers resistance to K. lactis zymotoxin; GO_component: GO:0033588 - Elongator holoenzyme complex [Evidence IDA] [PMID 11689709]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 12139626]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 12139626]; GO_function: GO:0008080 - N-acetyltransferase activity [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0004402 - histone acetyltransferase activity [Evidence IEA]; GO_function: GO:0004402 - histone acetyltransferase activity [Evidence IDA,ISS] [PMID 10445034]; GO_function: GO:0051536 - iron-sulfur cluster binding [Evidence IEA,IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016746 - transferase activity, transferring acyl groups [Evidence IEA]; GO_process: GO:0016568 - chromatin modification [Evidence IEA]; GO_process: GO:0016573 - histone acetylation [Evidence IEA]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 11689709]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0002098 - tRNA wobble uridine modification [Evidence IMP] [PMID 18755837]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Elongator subunit ELP3 1742769 ELP3 30037586 ELP3 Sugiyamaella lignohabitans Elongator subunit ELP3 XP_018734770.1 1741108 R 796027 CDS AWJ20_543 30037587 complement(join(1743554..1744704,1745544..1745607)) A 1 NC_031672.1 glycine zipper family protein 1745607 30037587 AWJ20_543 Sugiyamaella lignohabitans glycine zipper family protein XP_018734771.1 1743554 R 796027 CDS AWJ20_544 30037588 1743651..1748306 A 1 NC_031672.1 COPII vesicle coat protein required for ER transport vesicle budding; essential factor in endoplasmic reticulum exit site (ERES) formation, as well as in COPII-mediated ER-to-Golgi traffic; bound to periphery of ER membranes and may act to stabilize initial COPII complexes; interacts with Sec23p, Sec24p and Sec31p; GO_component: GO:0012507 - ER to Golgi transport vesicle membrane [Evidence IDA] [PMID 7593161]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0070971 - endoplasmic reticulum exit site [Evidence IDA] [PMID 22675024]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0043495 - protein anchor [Evidence IDA] [PMID 12235121]; GO_function: GO:0043495 - protein anchor [Evidence IDA] [PMID 7593161]; GO_process: GO:0048208 - COPII vesicle coating [Evidence IEA]; GO_process: GO:0048208 - COPII vesicle coating [Evidence IDA] [PMID 12235121]; GO_process: GO:0006914 - autophagy [Evidence IEA]; GO_process: GO:0070973 - protein localization to endoplasmic reticulum exit site [Evidence IMP] [PMID 22675024]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IEA]; Sec16p 1748306 SEC16 30037588 SEC16 Sugiyamaella lignohabitans Sec16p XP_018734772.1 1743651 D 796027 CDS AWJ20_545 30037589 1748456..1750846 A 1 NC_031672.1 COPII vesicle coat protein required for ER transport vesicle budding; essential factor in endoplasmic reticulum exit site (ERES) formation, as well as in COPII-mediated ER-to-Golgi traffic; bound to periphery of ER membranes and may act to stabilize initial COPII complexes; interacts with Sec23p, Sec24p and Sec31p; GO_component: GO:0012507 - ER to Golgi transport vesicle membrane [Evidence IDA] [PMID 7593161]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0070971 - endoplasmic reticulum exit site [Evidence IDA] [PMID 22675024]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0043495 - protein anchor [Evidence IDA] [PMID 12235121]; GO_function: GO:0043495 - protein anchor [Evidence IDA] [PMID 7593161]; GO_process: GO:0048208 - COPII vesicle coating [Evidence IEA]; GO_process: GO:0048208 - COPII vesicle coating [Evidence IDA] [PMID 12235121]; GO_process: GO:0006914 - autophagy [Evidence IEA]; GO_process: GO:0070973 - protein localization to endoplasmic reticulum exit site [Evidence IMP] [PMID 22675024]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IEA]; Sec16p 1750846 SEC16 30037589 SEC16 Sugiyamaella lignohabitans Sec16p XP_018734773.1 1748456 D 796027 CDS AWJ20_546 30037590 1757997..1760285 A 1 NC_031672.1 uncharacterized protein 1760285 30037590 AWJ20_546 Sugiyamaella lignohabitans uncharacterized protein XP_018734774.1 1757997 D 796027 CDS AWJ20_547 30037591 complement(1760684..1761508) A 1 NC_031672.1 RNA polymerase subunit AC40; common to RNA polymerase I and III; GO_component: GO:0005736 - DNA-directed RNA polymerase I complex [Evidence IDA] [PMID 11486042]; GO_component: GO:0005736 - DNA-directed RNA polymerase I complex [Evidence IDA] [PMID 9837969]; GO_component: GO:0005666 - DNA-directed RNA polymerase III complex [Evidence IDA] [PMID 10611227]; GO_component: GO:0005666 - DNA-directed RNA polymerase III complex [Evidence IDA] [PMID 3905793]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0003899 - DNA-directed RNA polymerase activity [Evidence IEA,IEA]; GO_function: GO:0001054 - RNA polymerase I activity [Evidence IDA] [PMID 9837969]; GO_function: GO:0001056 - RNA polymerase III activity [Evidence IDA] [PMID 3905793]; GO_function: GO:0046983 - protein dimerization activity [Evidence IEA]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; GO_process: GO:0042797 - tRNA transcription from RNA polymerase III promoter [Evidence IDA] [PMID 3905793]; GO_process: GO:0006360 - transcription from RNA polymerase I promoter [Evidence IDA] [PMID 9837969]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; DNA-directed RNA polymerase core subunit RPC40 1761508 RPC40 30037591 RPC40 Sugiyamaella lignohabitans DNA-directed RNA polymerase core subunit RPC40 XP_018734775.1 1760684 R 796027 CDS AWJ20_548 30037592 1763064..1763807 A 1 NC_031672.1 top hit is XP_003029647.1 originated in Schizophyllum commune H4-8; thioredoxin-like protein 1763807 TXL1 30037592 TXL1 Sugiyamaella lignohabitans thioredoxin-like protein XP_018734776.1 1763064 D 796027 CDS AWJ20_549 30037593 1764309..1765496 A 1 NC_031672.1 Translation initiation factor eIF4A; DEA(D/H)-box RNA helicase that couples ATPase activity to RNA binding and unwinding; forms a dumbbell structure of two compact domains connected by a linker; interacts with eIF4G; protein abundance increases in response to DNA replication stress; TIF1 has a paralog, TIF2, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence ISS] [PMID 2648398]; GO_component: GO:0016281 - eukaryotic translation initiation factor 4F complex [Evidence IGI] [PMID 10409745]; GO_component: GO:0016281 - eukaryotic translation initiation factor 4F complex [Evidence IGI,ISS] [PMID 2648398]; GO_component: GO:0005840 - ribosome [Evidence TAS] [PMID 9841679]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004004 - ATP-dependent RNA helicase activity [Evidence IDA,IMP] [PMID 1502180]; GO_function: GO:0008026 - ATP-dependent helicase activity [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0008186 - RNA-dependent ATPase activity [Evidence IDA] [PMID 24471916]; GO_function: GO:0004386 - helicase activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0003743 - translation initiation factor activity [Evidence IEA]; GO_function: GO:0003743 - translation initiation factor activity [Evidence IDA,IMP] [PMID 1502180]; GO_function: GO:0003743 - translation initiation factor activity [Evidence ISS] [PMID 2648398]; GO_function: GO:0003743 - translation initiation factor activity [Evidence TAS] [PMID 9841679]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0006446 - regulation of translational initiation [Evidence ISS] [PMID 2648398]; GO_process: GO:0006412 - translation [Evidence IEA]; GO_process: GO:0006413 - translational initiation [Evidence IEA]; GO_process: GO:0006413 - translational initiation [Evidence IDA,IMP] [PMID 1502180]; translation initiation factor eIF4A 1765496 TIF1 30037593 TIF1 Sugiyamaella lignohabitans translation initiation factor eIF4A XP_018734777.1 1764309 D 796027 CDS AWJ20_550 30037595 complement(join(1764549..1765492,1765587..1765635)) A 1 NC_031672.1 uncharacterized protein 1765635 30037595 AWJ20_550 Sugiyamaella lignohabitans uncharacterized protein XP_018734778.1 1764549 R 796027 CDS AWJ20_551 30037596 1766219..1767682 A 1 NC_031672.1 Cytoplasmic aspartyl aminopeptidase with possible vacuole function; Cvt pathway cargo protein; cleaves unblocked N-terminal acidic amino acids from peptide substrates; forms a 12-subunit homo-oligomer; M18 metalloprotease family; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0000328 - fungal-type vacuole lumen [Evidence IDA] [PMID 21343297]; GO_component: GO:0005840 - ribosome [Evidence IDA] [PMID 16702403]; GO_component: GO:0005775 - vacuolar lumen [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0004177 - aminopeptidase activity [Evidence IEA,IEA]; GO_function: GO:0004177 - aminopeptidase activity [Evidence IDA] [PMID 16367759]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0008237 - metallopeptidase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0006508 - proteolysis [Evidence IEA,IEA]; GO_process: GO:0006508 - proteolysis [Evidence ISS] [PMID 15606766]; GO_process: GO:0006508 - proteolysis [Evidence ISS] [PMID 8091229]; Ape4p 1767682 APE4 30037596 APE4 Sugiyamaella lignohabitans Ape4p XP_018734779.1 1766219 D 796027 CDS AWJ20_552 30037597 complement(1767911..1768222) A 1 NC_031672.1 uncharacterized protein 1768222 30037597 AWJ20_552 Sugiyamaella lignohabitans uncharacterized protein XP_018734780.1 1767911 R 796027 CDS AWJ20_553 30037598 complement(1769120..1770019) A 1 NC_031672.1 uncharacterized protein 1770019 30037598 AWJ20_553 Sugiyamaella lignohabitans uncharacterized protein XP_018734781.1 1769120 R 796027 CDS AWJ20_554 30037599 complement(1771012..1776051) A 1 NC_031672.1 formin BNI1 1776051 BNI1 30037599 BNI1 Sugiyamaella lignohabitans formin BNI1 XP_018734782.1 1771012 R 796027 CDS AWJ20_555 30037600 complement(1780880..1781902) A 1 NC_031672.1 ATP-NADH kinase; phosphorylates both NAD and NADH; homooctameric structure consisting of 60-kDa subunits; similar to Pos5p; overexpression complements certain pos5 phenotypes; YEF1 has a paralog, UTR1, that arose from the whole genome duplication; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0003951 - NAD+ kinase activity [Evidence IEA]; GO_function: GO:0003951 - NAD+ kinase activity [Evidence IDA] [PMID 15978040]; GO_function: GO:0042736 - NADH kinase activity [Evidence IEA]; GO_function: GO:0042736 - NADH kinase activity [Evidence IDA] [PMID 15978040]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0019674 - NAD metabolic process [Evidence IEA]; GO_process: GO:0006741 - NADP biosynthetic process [Evidence IEA]; GO_process: GO:0006741 - NADP biosynthetic process [Evidence IDA] [PMID 15978040]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; Yef1p 1781902 YEF1 30037600 YEF1 Sugiyamaella lignohabitans Yef1p XP_018734783.1 1780880 R 796027 CDS AWJ20_556 30037601 1788790..1790214 A 1 NC_031672.1 Protein required for pre-rRNA processing at both ends of ITS2; functions with Grc3p in a conserved mechanism to modulate rRNA processing and ribosome biogenesis; may coordinate the action of the Rat1p-Rai1p exoRNAse; required for the G1/S cell cycle transition; human ortholog is Las1L; mutants require the SSD1-v allele for viability; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22083961]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 23175604]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22083961]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 8582632]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IPI] [PMID 23175604]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0000448 - cleavage in ITS2 between 5.8S rRNA and LSU-rRNA of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 23175604]; GO_process: GO:0000460 - maturation of 5.8S rRNA [Evidence IMP] [PMID 22083961]; GO_process: GO:0000470 - maturation of LSU-rRNA [Evidence IMP] [PMID 22083961]; Las1p 1790214 LAS1 30037601 LAS1 Sugiyamaella lignohabitans Las1p XP_018734784.1 1788790 D 796027 CDS AWJ20_557 30037602 complement(1790437..1791981) A 1 NC_031672.1 Transcriptional regulator; involved in activation of the GAL genes in response to galactose; forms a complex with Gal80p to relieve Gal80p inhibition of Gal4p; binds galactose and ATP but does not have galactokinase activity; GAL3 has a paralog, GAL1, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 10866670]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 18952899]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 18952899]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004335 - galactokinase activity [Evidence IEA]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016773 - phosphotransferase activity, alcohol group as acceptor [Evidence IEA]; GO_function: GO:0005515 - protein binding [Evidence IPI] [PMID 8628318]; GO_process: GO:0005975 - carbohydrate metabolic process [Evidence IEA]; GO_process: GO:0046835 - carbohydrate phosphorylation [Evidence IEA]; GO_process: GO:0006012 - galactose metabolic process [Evidence IEA,IEA]; GO_process: GO:0006012 - galactose metabolic process [Evidence IMP] [PMID 4577139]; GO_process: GO:0045185 - maintenance of protein location [Evidence IMP] [PMID 19651897]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0000435 - positive regulation of transcription from RNA polymerase II promoter by galactose [Evidence IMP] [PMID 3013721]; transcriptional regulator GAL3 1791981 GAL3 30037602 GAL3 Sugiyamaella lignohabitans transcriptional regulator GAL3 XP_018734785.1 1790437 R 796027 CDS AWJ20_558 30037603 complement(1792376..1793926) A 1 NC_031672.1 alpha-arrestin involved in ubiquitin-dependent endocytosis; regulates endocytosis of plasma membrane proteins by recruiting the ubiquitin ligase Rsp5p to its target; involved in basal internalization and turnover of alpha-factor receptor Ste2p and recovery from pheromone induced G1 arrest; inhibited by Npr1p-mediated phosphorylation, which affects translocation between the cytosol and the plasma membrane; null mutant has reduced affinity for alcian blue dye; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA,IEA]; GO_component: GO:0005794 - Golgi apparatus [Evidence IDA] [PMID 22118465]; GO_component: GO:0030136 - clathrin-coated vesicle [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 22118465]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 22118465]; GO_function: GO:0031625 - ubiquitin protein ligase binding [Evidence IPI] [PMID 18976803]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0070086 - ubiquitin-dependent endocytosis [Evidence IMP,IPI] [PMID 18976803]; Ldb19p 1793926 LDB19 30037603 LDB19 Sugiyamaella lignohabitans Ldb19p XP_018734786.1 1792376 R 796027 CDS AWJ20_559 30037604 1797749..1798618 A 1 NC_031672.1 Mitochondrial ribosomal protein of the large subunit; appears as two protein spots (YmL10 and YmL18) on two-dimensional SDS gels; GO_component: GO:0015934 - large ribosomal subunit [Evidence IEA]; GO_component: GO:0005762 - mitochondrial large ribosomal subunit [Evidence IDA] [PMID 9151978]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IDA] [PMID 9151978]; GO_process: GO:0032543 - mitochondrial translation [Evidence IC] [PMID 9151978]; GO_process: GO:0006412 - translation [Evidence IEA]; mitochondrial 54S ribosomal protein YmL10/YmL18 1798618 MRPL10 30037604 MRPL10 Sugiyamaella lignohabitans mitochondrial 54S ribosomal protein YmL10/YmL18 XP_018734787.1 1797749 D 796027 CDS AWJ20_560 30037606 complement(1798829..1800352) A 1 NC_031672.1 Peptidyl-prolyl cis-trans isomerase (cyclophilin); catalyzes the cis-trans isomerization of peptide bonds N-terminal to proline residues; has a potential role in the secretory pathway; CPR2 has a paralog, CPR5, that arose from the whole genome duplication; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_component: GO:0005576 - extracellular region [Evidence IEA,IEA]; GO_function: GO:0016853 - isomerase activity [Evidence IEA]; GO_function: GO:0042277 - peptide binding [Evidence IEA]; GO_function: GO:0003755 - peptidyl-prolyl cis-trans isomerase activity [Evidence IEA,IEA,IEA]; GO_function: GO:0003755 - peptidyl-prolyl cis-trans isomerase activity [Evidence IDA] [PMID 1761234]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0006457 - protein folding [Evidence IEA,IEA]; GO_process: GO:0000413 - protein peptidyl-prolyl isomerization [Evidence IEA,IEA,IEA]; peptidylprolyl isomerase CPR2 1800352 CPR2 30037606 CPR2 Sugiyamaella lignohabitans peptidylprolyl isomerase CPR2 XP_018734788.1 1798829 R 796027 CDS AWJ20_561 30037607 complement(1806273..1806701) A 1 NC_031672.1 uncharacterized protein 1806701 30037607 AWJ20_561 Sugiyamaella lignohabitans uncharacterized protein XP_018734789.1 1806273 R 796027 CDS AWJ20_562 30037608 1807820..1810699 A 1 NC_031672.1 Subunit of the NuA3 histone acetyltransferase complex; this complex acetylates histone H3; contains PHD finger domain that interacts with methylated histone H3; GO_component: GO:0033100 - NuA3 histone acetyltransferase complex [Evidence IDA] [PMID 17157260]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0035064 - methylated histone binding [Evidence IDA] [PMID 17142463]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0016573 - histone acetylation [Evidence IPI] [PMID 17157260]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Nto1p 1810699 NTO1 30037608 NTO1 Sugiyamaella lignohabitans Nto1p XP_018734790.1 1807820 D 796027 CDS AWJ20_563 30037609 complement(1812874..1814268) A 1 NC_031672.1 Cell division control protein 45-like protein 1814268 30037609 AWJ20_563 Sugiyamaella lignohabitans Cell division control protein 45-like protein XP_018734791.1 1812874 R 796027 CDS AWJ20_564 30037610 complement(1815400..1816440) A 1 NC_031672.1 Central component of the peroxisomal protein import machinery; peroxisomal membrane peroxin; interacts with both PTS1 (Pex5p) and PTS2 (Pex7p), peroxisomal matrix protein signal recognition factors and membrane receptor Pex13p; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005778 - peroxisomal membrane [Evidence IEA,IEA]; GO_component: GO:0005778 - peroxisomal membrane [Evidence IDA] [PMID 9094717]; GO_component: GO:0005778 - peroxisomal membrane [Evidence IDA] [PMID 9312008]; GO_component: GO:0005777 - peroxisome [Evidence IEA]; GO_function: GO:0030674 - protein binding, bridging [Evidence IPI] [PMID 9094717]; GO_function: GO:0030674 - protein binding, bridging [Evidence IPI] [PMID 9312008]; GO_process: GO:0016560 - protein import into peroxisome matrix, docking [Evidence IEA]; GO_process: GO:0016560 - protein import into peroxisome matrix, docking [Evidence IMP,IPI] [PMID 16107331]; GO_process: GO:0016560 - protein import into peroxisome matrix, docking [Evidence IPI] [PMID 9094717]; GO_process: GO:0016560 - protein import into peroxisome matrix, docking [Evidence IPI] [PMID 9312008]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Pex14p 1816440 PEX14 30037610 PEX14 Sugiyamaella lignohabitans Pex14p XP_018734792.1 1815400 R 796027 CDS AWJ20_566 30037612 complement(1817389..1819566) A 1 NC_031672.1 transcription factor TFIIIC subunit TFC6 1819566 TFC6 30037612 TFC6 Sugiyamaella lignohabitans transcription factor TFIIIC subunit TFC6 XP_018734793.1 1817389 R 796027 CDS AWJ20_567 30037613 complement(1820270..1821529) A 1 NC_031672.1 E1-like protein that activates Urm1p before urmylation; also acts in thiolation of the wobble base of cytoplasmic tRNAs by adenylating and then thiolating Urm1p; receives sulfur from Tum1p; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005829 - cytosol [Evidence IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0042292 - URM1 activating enzyme activity [Evidence IDA,ISS] [PMID 10713047]; GO_function: GO:0042292 - URM1 activating enzyme activity [Evidence IMP] [PMID 14555475]; GO_function: GO:0003824 - catalytic activity [Evidence IEA,IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016779 - nucleotidyltransferase activity [Evidence IEA]; GO_function: GO:0070733 - protein adenylyltransferase activity [Evidence IMP] [PMID 19145231]; GO_function: GO:0016783 - sulfurtransferase activity [Evidence IEA]; GO_function: GO:0016783 - sulfurtransferase activity [Evidence IDA] [PMID 18491921]; GO_function: GO:0016783 - sulfurtransferase activity [Evidence IMP] [PMID 19145231]; GO_function: GO:0004792 - thiosulfate sulfurtransferase activity [Evidence IEA]; GO_function: GO:0004792 - thiosulfate sulfurtransferase activity [Evidence IDA] [PMID 19864628]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0007114 - cell budding [Evidence IGI] [PMID 14551258]; GO_process: GO:0034599 - cellular response to oxidative stress [Evidence IMP] [PMID 14555475]; GO_process: GO:0018192 - enzyme active site formation via L-cysteine persulfide [Evidence IEA]; GO_process: GO:0001403 - invasive growth in response to glucose limitation [Evidence IGI,IMP] [PMID 14551258]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0032447 - protein urmylation [Evidence IEA]; GO_process: GO:0032447 - protein urmylation [Evidence IDA] [PMID 10713047]; GO_process: GO:0032447 - protein urmylation [Evidence IMP] [PMID 14555475]; GO_process: GO:2000220 - regulation of pseudohyphal growth [Evidence IMP] [PMID 22043304]; GO_process: GO:0008033 - tRNA processing [Evidence IEA]; GO_process: GO:0034227 - tRNA thio-modification [Evidence IEA]; GO_process: GO:0034227 - tRNA thio-modification [Evidence IMP] [PMID 18755837]; GO_process: GO:0002143 - tRNA wobble position uridine thiolation [Evidence IEA]; GO_process: GO:0002143 - tRNA wobble position uridine thiolation [Evidence IMP] [PMID 18664566]; GO_process: GO:0002143 - tRNA wobble position uridine thiolation [Evidence IMP] [PMID 19145231]; GO_process: GO:0002143 - tRNA wobble position uridine thiolation [Evidence IMP] [PMID 19151091]; GO_process: GO:0002098 - tRNA wobble uridine modification [Evidence IEA]; Uba4p 1821529 UBA4 30037613 UBA4 Sugiyamaella lignohabitans Uba4p XP_018734794.1 1820270 R 796027 CDS AWJ20_568 30037614 1823238..1824650 A 1 NC_031672.1 beta-1,6-glucanase Neg1 1824650 30037614 AWJ20_568 Sugiyamaella lignohabitans beta-1,6-glucanase Neg1 XP_018734795.1 1823238 D 796027 CDS AWJ20_569 30037615 complement(1826581..1827948) A 1 NC_031672.1 uncharacterized protein 1827948 30037615 AWJ20_569 Sugiyamaella lignohabitans uncharacterized protein XP_018734796.1 1826581 R 796027 CDS AWJ20_570 30037617 1829659..1831263 A 1 NC_031672.1 Subunit of the SF3a splicing factor complex; required for spliceosome assembly; GO_component: GO:0005686 - U2 snRNP [Evidence TAS] [PMID 11804584]; GO_component: GO:0071004 - U2-type prespliceosome [Evidence IDA] [PMID 16618970]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005681 - spliceosomal complex [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IDA] [PMID 8065365]; GO_process: GO:0006396 - RNA processing [Evidence IEA]; GO_process: GO:0008380 - RNA splicing [Evidence IEA]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0000398 - mRNA splicing, via spliceosome [Evidence IDA] [PMID 8969185]; Prp21p 1831263 PRP21 30037617 PRP21 Sugiyamaella lignohabitans Prp21p XP_018734797.1 1829659 D 796027 CDS AWJ20_571 30037618 complement(1831947..1833077) A 1 NC_031672.1 Glutamine-rich cytoplasmic cochaperone; serves as a scaffold bringing together Get4, Get5p, and other TRC complex members that are required to mediate posttranslational insertion of tail-anchored proteins into the ER membrane; interacts with the prion domain of Sup35p; amyloid sensor; plays a role in targeting chaperones to prion aggregates; has similarity to human cochaperone SGT; forms cytoplasmic foci upon DNA replication stress; GO_component: GO:0072380 - TRC complex [Evidence IDA] [PMID 20850366]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_function: GO:0032947 - protein complex scaffold [Evidence IMP] [PMID 20850366]; GO_process: GO:0006620 - posttranslational protein targeting to membrane [Evidence IDA] [PMID 20850366]; GO_process: GO:0009408 - response to heat [Evidence IMP] [PMID 12482202]; Sgt2p 1833077 SGT2 30037618 SGT2 Sugiyamaella lignohabitans Sgt2p XP_018734798.1 1831947 R 796027 CDS AWJ20_572 30037619 complement(1833829..1834542) A 1 NC_031672.1 uncharacterized protein 1834542 30037619 AWJ20_572 Sugiyamaella lignohabitans uncharacterized protein XP_018734799.1 1833829 R 796027 CDS AWJ20_573 30037620 1835870..1838860 A 1 NC_031672.1 uncharacterized protein 1838860 30037620 AWJ20_573 Sugiyamaella lignohabitans uncharacterized protein XP_018734800.1 1835870 D 796027 CDS AWJ20_574 30037621 1838956..1840209 A 1 NC_031672.1 uncharacterized protein 1840209 30037621 AWJ20_574 Sugiyamaella lignohabitans uncharacterized protein XP_018734801.1 1838956 D 796027 CDS AWJ20_575 30037622 complement(1840385..1841143) A 1 NC_031672.1 uncharacterized protein 1841143 30037622 AWJ20_575 Sugiyamaella lignohabitans uncharacterized protein XP_018734802.1 1840385 R 796027 CDS AWJ20_576 30037623 complement(1842115..1842945) A 1 NC_031672.1 uncharacterized protein 1842945 30037623 AWJ20_576 Sugiyamaella lignohabitans uncharacterized protein XP_018734803.1 1842115 R 796027 CDS AWJ20_577 30037624 complement(1843590..1845671) A 1 NC_031672.1 Protein required for transcription of rDNA by RNA polymerase I; transcription factor independent of DNA template; involved in recruitment of RNA polymerase I to rDNA; structure reveals unique HEAT repeat fold and a surface serine patch; phosphorylation of serine patch impairs cell growth and reduces RNA polymerase I binding in vitro and RNA polymerase I recruitment to the rDNA gene in vivo; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 19416370]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0003677 - DNA binding [Evidence IDA] [PMID 23393135]; GO_function: GO:0001042 - RNA polymerase I core binding [Evidence IDA,IPI] [PMID 11032814]; GO_function: GO:0001179 - RNA polymerase I transcription factor binding [Evidence IDA,IPI] [PMID 11032814]; GO_function: GO:0001082 - RNA polymerase I transcription factor binding transcription factor activity [Evidence IDA,IGI,IPI] [PMID 11032814]; GO_function: GO:0001181 - core RNA polymerase I binding transcription factor activity [Evidence IDA,IGI,IPI] [PMID 11032814]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0001180 - transcription initiation from RNA polymerase I promoter for nuclear large rRNA transcript [Evidence IMP] [PMID 8670901]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Rrn3p 1845671 RRN3 30037624 RRN3 Sugiyamaella lignohabitans Rrn3p XP_018734804.1 1843590 R 796027 CDS AWJ20_578 30037625 complement(1847161..1848198) A 1 NC_031672.1 SMN family protein Yip11 1848198 yip11 30037625 yip11 Sugiyamaella lignohabitans SMN family protein Yip11 XP_018734805.1 1847161 R 796027 CDS AWJ20_579 30037626 1848868..1850061 A 1 NC_031672.1 uncharacterized protein 1850061 30037626 AWJ20_579 Sugiyamaella lignohabitans uncharacterized protein XP_018734806.1 1848868 D 796027 CDS AWJ20_580 30037628 complement(join(1851571..1852541,1852732..1852786)) A 1 NC_031672.1 uncharacterized protein 1852786 30037628 AWJ20_580 Sugiyamaella lignohabitans uncharacterized protein XP_018734807.1 1851571 R 796027 CDS AWJ20_581 30037629 join(1855818..1856573,1858932..1860422) A 1 NC_031672.1 Cargo-binding mu subunit of AP-2; AP-2 is a heterotetrameric endocytic cargo-binding adaptor that facilitates uptake of membrane proteins during clathrin-mediated endocytosis; Apm4p is required for AP-2 function and localization, and binds cell wall stress receptor Mid2p; AP-2 is required for cell polarity responses to pheromone, nutritional status and cell wall damage in S. cerevisiae, and for hyphal growth in C. albicans; AP-2 complex is conserved in mammals; GO_component: GO:0030122 - AP-2 adaptor complex [Evidence IPI] [PMID 10564262]; GO_component: GO:0030131 - clathrin adaptor complex [Evidence IEA]; GO_component: GO:0030665 - clathrin-coated vesicle membrane [Evidence IEA]; GO_component: GO:0005905 - coated pit [Evidence IEA,IEA]; GO_component: GO:0031410 - cytoplasmic vesicle [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0005515 - protein binding [Evidence IPI] [PMID 24460703]; GO_process: GO:0006897 - endocytosis [Evidence IEA]; GO_process: GO:0006886 - intracellular protein transport [Evidence IEA]; GO_process: GO:0006886 - intracellular protein transport [Evidence IC] [PMID 10564262]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IEA]; Apm4p 1860422 APM4 30037629 APM4 Sugiyamaella lignohabitans Apm4p XP_018734808.1 1855818 D 796027 CDS AWJ20_582 30037630 complement(1861302..1862462) A 1 NC_031672.1 uncharacterized protein 1862462 30037630 AWJ20_582 Sugiyamaella lignohabitans uncharacterized protein XP_018734809.1 1861302 R 796027 CDS AWJ20_583 30037631 1862866..1863294 A 1 NC_031672.1 SPOUT methyltransferase; catalyzes omega-monomethylation of Rps3p on Arg-146; not an essential gene; predicted to be involved in rRNA processing and ribosome biogenesis and in biopolymer catabolism; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_function: GO:0035241 - protein-arginine omega-N monomethyltransferase activity [Evidence IDA] [PMID 22650761]; GO_process: GO:0018216 - peptidyl-arginine methylation [Evidence IMP] [PMID 22650761]; Sfm1p 1863294 SFM1 30037631 SFM1 Sugiyamaella lignohabitans Sfm1p XP_018734810.1 1862866 D 796027 CDS AWJ20_584 30037632 complement(1863730..1866396) A 1 NC_031672.1 Putative acyltransferase with similarity to Eeb1p and Eht1p; has a minor role in medium-chain fatty acid ethyl ester biosynthesis; may be involved in lipid metabolism and detoxification; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016746 - transferase activity, transferring acyl groups [Evidence ISS] [PMID 16361250]; GO_process: GO:0051792 - medium-chain fatty acid biosynthetic process [Evidence IGI] [PMID 16361250]; putative carboxylic ester hydrolase 1866396 30037632 AWJ20_584 Sugiyamaella lignohabitans putative carboxylic ester hydrolase XP_018734811.1 1863730 R 796027 CDS AWJ20_585 30037633 1869674..1872283 A 1 NC_031672.1 uncharacterized protein 1872283 30037633 AWJ20_585 Sugiyamaella lignohabitans uncharacterized protein XP_018734812.1 1869674 D 796027 CDS AWJ20_586 30037634 1873903..1876632 A 1 NC_031672.1 uncharacterized protein 1876632 30037634 AWJ20_586 Sugiyamaella lignohabitans uncharacterized protein XP_018734813.1 1873903 D 796027 CDS AWJ20_587 30037635 1876808..1877710 A 1 NC_031672.1 uncharacterized protein 1877710 30037635 AWJ20_587 Sugiyamaella lignohabitans uncharacterized protein XP_018734814.1 1876808 D 796027 CDS AWJ20_588 30037636 complement(1878820..1879776) A 1 NC_031672.1 NADPH-dependent alpha-keto amide reductase; reduces aromatic alpha-keto amides, aliphatic alpha-keto esters, and aromatic alpha-keto esters; member of the aldo-keto reductase (AKR) family; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 16622836]; GO_function: GO:0004032 - alditol:NADP+ 1-oxidoreductase activity [Evidence IDA,ISS] [PMID 11306085]; GO_function: GO:0004033 - aldo-keto reductase (NADP) activity [Evidence IDA] [PMID 17140678]; GO_function: GO:0051268 - alpha-keto amide reductase activity [Evidence IDA] [PMID 15564669]; GO_function: GO:0051269 - alpha-keto ester reductase activity [Evidence IDA] [PMID 15564669]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_process: GO:0043603 - cellular amide metabolic process [Evidence IDA] [PMID 15564669]; GO_process: GO:0006725 - cellular aromatic compound metabolic process [Evidence IDA] [PMID 16268655]; GO_process: GO:0042180 - cellular ketone metabolic process [Evidence IDA] [PMID 17140678]; GO_process: GO:0034599 - cellular response to oxidative stress [Evidence IGI] [PMID 17919749]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; aldo-keto reductase superfamily protein 1879776 30037636 AWJ20_588 Sugiyamaella lignohabitans aldo-keto reductase superfamily protein XP_018734815.1 1878820 R 796027 CDS AWJ20_589 30037637 complement(1881267..1882013) A 1 NC_031672.1 uncharacterized protein 1882013 30037637 AWJ20_589 Sugiyamaella lignohabitans uncharacterized protein XP_018734816.1 1881267 R 796027 CDS AWJ20_590 30037639 1884606..1885838 A 1 NC_031672.1 uncharacterized protein 1885838 30037639 AWJ20_590 Sugiyamaella lignohabitans uncharacterized protein XP_018734817.1 1884606 D 796027 CDS AWJ20_591 30037640 complement(1894019..1896628) A 1 NC_031672.1 uncharacterized protein 1896628 30037640 AWJ20_591 Sugiyamaella lignohabitans uncharacterized protein XP_018734818.1 1894019 R 796027 CDS AWJ20_592 30037641 complement(1900245..1903091) A 1 NC_031672.1 uncharacterized protein 1903091 30037641 AWJ20_592 Sugiyamaella lignohabitans uncharacterized protein XP_018734819.1 1900245 R 796027 CDS AWJ20_593 30037642 complement(1905734..1906330) A 1 NC_031672.1 uncharacterized protein 1906330 30037642 AWJ20_593 Sugiyamaella lignohabitans uncharacterized protein XP_018734820.1 1905734 R 796027 CDS AWJ20_594 30037643 complement(1906668..1907312) A 1 NC_031672.1 Mov34/MPN/PAD-1 family protein 1907312 30037643 AWJ20_594 Sugiyamaella lignohabitans Mov34/MPN/PAD-1 family protein XP_018734821.1 1906668 R 796027 CDS AWJ20_595 30037644 1910172..1911719 A 1 NC_031672.1 phosphatidylinositol-4-phosphate 5-kinase its3 1911719 30037644 AWJ20_595 Sugiyamaella lignohabitans phosphatidylinositol-4-phosphate 5-kinase its3 XP_018734822.1 1910172 D 796027 CDS AWJ20_596 30037645 complement(1913093..1913791) A 1 NC_031672.1 uncharacterized protein 1913791 30037645 AWJ20_596 Sugiyamaella lignohabitans uncharacterized protein XP_018734823.1 1913093 R 796027 CDS AWJ20_597 30037646 1915894..1918386 A 1 NC_031672.1 similar to Aspergillus terreus NIH2624 XP_001208692.1; elongation factor 2 1918386 EFT1 30037646 EFT1 Sugiyamaella lignohabitans elongation factor 2 XP_018734824.1 1915894 D 796027 CDS AWJ20_598 30037647 complement(1918881..1919087) A 1 NC_031672.1 NAD(+)-dependent formate dehydrogenase; may protect cells from exogenous formate; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 11921099]; GO_function: GO:0051287 - NAD binding [Evidence IEA]; GO_function: GO:0048037 - cofactor binding [Evidence IEA]; GO_function: GO:0008863 - formate dehydrogenase (NAD+) activity [Evidence IEA]; GO_function: GO:0008863 - formate dehydrogenase (NAD+) activity [Evidence IGI,ISS] [PMID 11921099]; GO_function: GO:0008863 - formate dehydrogenase (NAD+) activity [Evidence IDA] [PMID 21246355]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor [Evidence IEA]; GO_process: GO:0042183 - formate catabolic process [Evidence IGI] [PMID 11921099]; GO_process: GO:0042183 - formate catabolic process [Evidence IGI] [PMID 19564482]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; formate dehydrogenase (NAD+) 1919087 FDH1 30037647 FDH1 Sugiyamaella lignohabitans formate dehydrogenase (NAD+) XP_018734825.1 1918881 R 796027 CDS AWJ20_599 30037648 complement(1919133..1920095) A 1 NC_031672.1 NAD(+)-dependent formate dehydrogenase; may protect cells from exogenous formate; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 11921099]; GO_function: GO:0051287 - NAD binding [Evidence IEA]; GO_function: GO:0048037 - cofactor binding [Evidence IEA]; GO_function: GO:0008863 - formate dehydrogenase (NAD+) activity [Evidence IEA]; GO_function: GO:0008863 - formate dehydrogenase (NAD+) activity [Evidence IGI,ISS] [PMID 11921099]; GO_function: GO:0008863 - formate dehydrogenase (NAD+) activity [Evidence IDA] [PMID 21246355]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor [Evidence IEA]; GO_process: GO:0042183 - formate catabolic process [Evidence IGI] [PMID 11921099]; GO_process: GO:0042183 - formate catabolic process [Evidence IGI] [PMID 19564482]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; formate dehydrogenase (NAD+) 1920095 FDH1 30037648 FDH1 Sugiyamaella lignohabitans formate dehydrogenase (NAD+) XP_018734826.1 1919133 R 796027 CDS AWJ20_600 30037651 complement(1921083..1924895) A 1 NC_031672.1 GTPase-activating protein for polarity-establishment protein Cdc42p; implicated in control of septin organization, pheromone response, and haploid invasive growth; relocalizes from bud neck to cytoplasm upon DNA replication stress; RGA1 has a paralog, RGA2, that arose from the whole genome duplication; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 22842922]; GO_component: GO:0032177 - cellular bud neck split septin rings [Evidence IDA] [PMID 18166650]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_function: GO:0005096 - GTPase activator activity [Evidence IEA]; GO_function: GO:0005100 - Rho GTPase activator activity [Evidence IDA] [PMID 12455995]; GO_function: GO:0005100 - Rho GTPase activator activity [Evidence IDA] [PMID 17981141]; GO_function: GO:0005100 - Rho GTPase activator activity [Evidence IDA] [PMID 18166650]; GO_function: GO:0005100 - Rho GTPase activator activity [Evidence IGI,IPI] [PMID 7498791]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0007015 - actin filament organization [Evidence IMP] [PMID 8657111]; GO_process: GO:0007118 - budding cell apical bud growth [Evidence IPI] [PMID 10066831]; GO_process: GO:0007119 - budding cell isotropic bud growth [Evidence IPI] [PMID 10066831]; GO_process: GO:0030010 - establishment of cell polarity [Evidence IMP] [PMID 18166650]; GO_process: GO:0001403 - invasive growth in response to glucose limitation [Evidence IPI] [PMID 10066831]; GO_process: GO:0000750 - pheromone-dependent signal transduction involved in conjugation with cellular fusion [Evidence IGI] [PMID 7498791]; GO_process: GO:0043547 - positive regulation of GTPase activity [Evidence IEA]; GO_process: GO:0007124 - pseudohyphal growth [Evidence IPI] [PMID 10066831]; GO_process: GO:0019236 - response to pheromone [Evidence IEA]; GO_process: GO:0031106 - septin ring organization [Evidence IGI] [PMID 14517318]; GO_process: GO:0007165 - signal transduction [Evidence IEA]; Rga1p 1924895 RGA1 30037651 RGA1 Sugiyamaella lignohabitans Rga1p XP_018734827.1 1921083 R 796027 CDS AWJ20_601 30037652 complement(1930481..1932868) A 1 NC_031672.1 uncharacterized protein 1932868 30037652 AWJ20_601 Sugiyamaella lignohabitans uncharacterized protein XP_018734828.1 1930481 R 796027 CDS AWJ20_602 30037653 1934537..1937488 A 1 NC_031672.1 uncharacterized protein 1937488 30037653 AWJ20_602 Sugiyamaella lignohabitans uncharacterized protein XP_018734829.1 1934537 D 796027 CDS AWJ20_603 30037654 complement(1939631..1942555) A 1 NC_031672.1 uncharacterized protein 1942555 30037654 AWJ20_603 Sugiyamaella lignohabitans uncharacterized protein XP_018734830.1 1939631 R 796027 CDS AWJ20_604 30037655 complement(1944828..1946222) A 1 NC_031672.1 Oxidoreductase of the mitochondrial inner membrane; involved in cytoplasmic and mitochondrial iron homeostasis and required for activity of Fe-S cluster-containing enzymes; one of the few mitochondrial proteins essential for viability; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IDA] [PMID 9727014]; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0015039 - NADPH-adrenodoxin reductase activity [Evidence IDA] [PMID 9727014]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_process: GO:0006879 - cellular iron ion homeostasis [Evidence IMP] [PMID 11035018]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0006744 - ubiquinone biosynthetic process [Evidence IMP] [PMID 20534343]; Arh1p 1946222 ARH1 30037655 ARH1 Sugiyamaella lignohabitans Arh1p XP_018734831.1 1944828 R 796027 CDS AWJ20_605 30037656 1948121..1951831 A 1 NC_031672.1 CAF assembly factor (CAF-1) complex large subunit Pcf1 1951831 pcf1 30037656 pcf1 Sugiyamaella lignohabitans CAF assembly factor (CAF-1) complex large subunit Pcf1 XP_018734832.1 1948121 D 796027 CDS AWJ20_606 30037657 1956560..1957654 A 1 NC_031672.1 hexose transporter HXT11 1957654 HXT11 30037657 HXT11 Sugiyamaella lignohabitans hexose transporter HXT11 XP_018734833.1 1956560 D 796027 CDS AWJ20_607 30037658 join(1959365..1959592,1960460..1960546) A 1 NC_031672.1 uncharacterized protein 1960546 30037658 AWJ20_607 Sugiyamaella lignohabitans uncharacterized protein XP_018734834.1 1959365 D 796027 CDS AWJ20_608 30037659 1961379..1965563 A 1 NC_031672.1 histone methyltransferase SET1 1965563 SET1 30037659 SET1 Sugiyamaella lignohabitans histone methyltransferase SET1 XP_018734835.1 1961379 D 796027 CDS AWJ20_609 30037660 1966675..1969131 A 1 NC_031672.1 DNA-binding protein of the mitochondria; involved in repair of mitochondrial DNA; has ATPase activity and binds to DNA mismatches; has homology to E. coli MutS; transcription is induced during meiosis; GO_component: GO:0032300 - mismatch repair complex [Evidence IBA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 15611870]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 7961998]; GO_component: GO:0000228 - nuclear chromosome [Evidence IRD]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0008094 - DNA-dependent ATPase activity [Evidence IDA] [PMID 7961999]; GO_function: GO:0003684 - damaged DNA binding [Evidence IBA]; GO_function: GO:0032139 - dinucleotide insertion or deletion binding [Evidence IDA] [PMID 7961998]; GO_function: GO:0032137 - guanine/thymine mispair binding [Evidence IDA] [PMID 7961998]; GO_function: GO:0000404 - heteroduplex DNA loop binding [Evidence IRD]; GO_function: GO:0030983 - mismatched DNA binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006281 - DNA repair [Evidence IEA]; GO_process: GO:0006281 - DNA repair [Evidence IMP] [PMID 1334021]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0043570 - maintenance of DNA repeat elements [Evidence IRD]; GO_process: GO:0000710 - meiotic mismatch repair [Evidence IRD]; GO_process: GO:0006298 - mismatch repair [Evidence IEA]; GO_process: GO:0006298 - mismatch repair [Evidence IMP] [PMID 15611870]; GO_process: GO:0043504 - mitochondrial DNA repair [Evidence IMP] [PMID 1334021]; GO_process: GO:0000002 - mitochondrial genome maintenance [Evidence IMP] [PMID 1334021]; GO_process: GO:0007005 - mitochondrion organization [Evidence IMP] [PMID 1334021]; GO_process: GO:0007005 - mitochondrion organization [Evidence IMP] [PMID 15611870]; GO_process: GO:0007131 - reciprocal meiotic recombination [Evidence IMP] [PMID 15590333]; mismatch repair ATPase MSH1 1969131 MSH1 30037660 MSH1 Sugiyamaella lignohabitans mismatch repair ATPase MSH1 XP_018734836.1 1966675 D 796027 CDS AWJ20_610 30037662 complement(1969227..1970924) A 1 NC_031672.1 RNA-binding protein required for the assembly of box H/ACA snoRNPs; thus required for pre-rRNA processing; forms a complex with Shq1p and interacts with H/ACA snoRNP components Nhp2p and Cbf5p; similar to Gar1p; GO_component: GO:0005654 - nucleoplasm [Evidence IDA] [PMID 12242285]; GO_component: GO:0005654 - nucleoplasm [Evidence IDA] [PMID 12515383]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 12515383]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IPI] [PMID 12515383]; GO_process: GO:0000493 - box H/ACA snoRNP assembly [Evidence IMP,IPI] [PMID 12228251]; GO_process: GO:0000493 - box H/ACA snoRNP assembly [Evidence IMP] [PMID 12242285]; GO_process: GO:0000493 - box H/ACA snoRNP assembly [Evidence IMP,IPI] [PMID 12515383]; GO_process: GO:0001522 - pseudouridine synthesis [Evidence IEA]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA,IEA]; Naf1p 1970924 NAF1 30037662 NAF1 Sugiyamaella lignohabitans Naf1p XP_018734837.1 1969227 R 796027 CDS AWJ20_611 30037663 complement(1973604..1974368) A 1 NC_031672.1 uncharacterized protein 1974368 30037663 AWJ20_611 Sugiyamaella lignohabitans uncharacterized protein XP_018734838.1 1973604 R 796027 CDS AWJ20_612 30037664 1975351..1976805 A 1 NC_031672.1 Aspartic protease; member of the yapsin family of proteases involved in cell wall growth and maintenance; attached to the plasma membrane via a glycosylphosphatidylinositol (GPI) anchor; GO_component: GO:0031225 - anchored component of membrane [Evidence IEA]; GO_component: GO:0046658 - anchored component of plasma membrane [Evidence IDA,IPI] [PMID 11016834]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_function: GO:0004190 - aspartic-type endopeptidase activity [Evidence IEA,IEA]; GO_function: GO:0004190 - aspartic-type endopeptidase activity [Evidence IDA,ISS] [PMID 10191273]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_process: GO:0031505 - fungal-type cell wall organization [Evidence IGI] [PMID 16087741]; GO_process: GO:0006508 - proteolysis [Evidence IEA,IEA]; Yps3p 1976805 YPS3 30037664 YPS3 Sugiyamaella lignohabitans Yps3p XP_018734839.1 1975351 D 796027 CDS AWJ20_614 30037666 complement(1977448..1978797) A 1 NC_031672.1 uncharacterized protein 1978797 30037666 AWJ20_614 Sugiyamaella lignohabitans uncharacterized protein XP_018734840.1 1977448 R 796027 CDS AWJ20_615 30037667 complement(1984741..1986804) A 1 NC_031672.1 uncharacterized protein 1986804 30037667 AWJ20_615 Sugiyamaella lignohabitans uncharacterized protein XP_018734841.1 1984741 R 796027 CDS AWJ20_616 30037668 1987623..1988636 A 1 NC_031672.1 uncharacterized protein 1988636 30037668 AWJ20_616 Sugiyamaella lignohabitans uncharacterized protein XP_018734842.1 1987623 D 796027 CDS AWJ20_617 30037669 complement(1989064..1990314) A 1 NC_031672.1 Iron transporter, mediates Fe2+ transport across inner mito membrane; mitochondrial carrier family member; active under low-iron conditions; may transport other cations; MRS3 has a paralog, MRS4, that arose from the whole genome duplication; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 1703236]; GO_function: GO:0005381 - iron ion transmembrane transporter activity [Evidence IMP] [PMID 12902335]; GO_process: GO:0008380 - RNA splicing [Evidence IGI] [PMID 2448588]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0048250 - mitochondrial iron ion transport [Evidence IDA] [PMID 12902335]; GO_process: GO:0006810 - transport [Evidence IEA]; Mrs3p 1990314 MRS3 30037669 MRS3 Sugiyamaella lignohabitans Mrs3p XP_018734843.1 1989064 R 796027 CDS AWJ20_618 30037670 complement(1992331..1995444) A 1 NC_031672.1 Protein required for biogenesis of the small ribosomal subunit; required for biogenesis of the small ribosomal subunit; heterozygous mutant shows haploinsufficiency in K1 killer toxin resistance; essential gene; GO_component: GO:0030686 - 90S preribosome [Evidence IDA] [PMID 12150911]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0008080 - N-acetyltransferase activity [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0042274 - ribosomal small subunit biogenesis [Evidence IMP] [PMID 12150911]; GO_process: GO:0042274 - ribosomal small subunit biogenesis [Evidence IMP] [PMID 19806183]; Kre33p 1995444 KRE33 30037670 KRE33 Sugiyamaella lignohabitans Kre33p XP_018734844.1 1992331 R 796027 CDS AWJ20_619 30037671 1996918..1997688 A 1 NC_031672.1 uncharacterized protein 1997688 30037671 AWJ20_619 Sugiyamaella lignohabitans uncharacterized protein XP_018734845.1 1996918 D 796027 CDS AWJ20_620 30037673 1998912..2000132 A 1 NC_031672.1 Endo-polygalacturonase; pectolytic enzyme that hydrolyzes the alpha-1,4-glycosidic bonds in the rhamnogalacturonan chains in pectins; GO_component: GO:0005576 - extracellular region [Evidence IDA] [PMID 10028181]; GO_component: GO:0005576 - extracellular region [Evidence IDA] [PMID 11935221]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016798 - hydrolase activity, acting on glycosyl bonds [Evidence IEA]; GO_function: GO:0004650 - polygalacturonase activity [Evidence IEA,IEA]; GO_function: GO:0004650 - polygalacturonase activity [Evidence IDA] [PMID 10650215]; GO_process: GO:0005975 - carbohydrate metabolic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0045490 - pectin catabolic process [Evidence IDA] [PMID 10028181]; GO_process: GO:0007124 - pseudohyphal growth [Evidence NAS] [PMID 11255250]; Pgu1p 2000132 PGU1 30037673 PGU1 Sugiyamaella lignohabitans Pgu1p XP_018734846.1 1998912 D 796027 CDS AWJ20_621 30037674 complement(2000373..2001728) A 1 NC_031672.1 RNA endoribonuclease involved in perinuclear mRNP quality control; involved in perinuclear mRNP quality control via the turnover of aberrant, unprocessed pre-mRNAs; interacts with subunits of THO/TREX, TREX-2, and RNA polymerase II; contains a PIN (PilT N terminus) domain; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 19127978]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 17030511]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 19127978]; GO_function: GO:0004521 - endoribonuclease activity [Evidence IDA,IMP] [PMID 19127978]; GO_process: GO:0071032 - nuclear mRNA surveillance of mRNP export [Evidence IMP] [PMID 19127978]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IGI,IMP,IPI] [PMID 17030511]; Swt1p 2001728 SWT1 30037674 SWT1 Sugiyamaella lignohabitans Swt1p XP_018734847.1 2000373 R 796027 CDS AWJ20_622 30037675 complement(2002185..2004992) A 1 NC_031672.1 uncharacterized protein 2004992 30037675 AWJ20_622 Sugiyamaella lignohabitans uncharacterized protein XP_018734848.1 2002185 R 796027 CDS AWJ20_623 30037676 2007235..2007858 A 1 NC_031672.1 uncharacterized protein 2007858 30037676 AWJ20_623 Sugiyamaella lignohabitans uncharacterized protein XP_018734849.1 2007235 D 796027 CDS AWJ20_624 30037677 complement(2008079..2011042) A 1 NC_031672.1 Protein that recognizes and binds damaged DNA (with Rad23p) during NER; subunit of Nuclear Excision Repair Factor 2 (NEF2); also involved, with Rad23p, in turnover of ubiquitylated proteins; NER stands for nucleotide excision repair; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 19889839]; GO_component: GO:0000111 - nucleotide-excision repair factor 2 complex [Evidence IDA] [PMID 7768886]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 19889839]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0003684 - damaged DNA binding [Evidence IEA]; GO_function: GO:0003684 - damaged DNA binding [Evidence IDA] [PMID 9813069]; GO_function: GO:0003684 - damaged DNA binding [Evidence IDA] [PMID 9837874]; GO_process: GO:0006281 - DNA repair [Evidence IEA]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0006289 - nucleotide-excision repair [Evidence IEA]; GO_process: GO:0006289 - nucleotide-excision repair [Evidence IMP] [PMID 18936173]; GO_process: GO:0043161 - proteasome-mediated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 19889839]; Rad4p 2011042 RAD4 30037677 RAD4 Sugiyamaella lignohabitans Rad4p XP_018734850.1 2008079 R 796027 CDS AWJ20_625 30037678 complement(2012986..2014929) A 1 NC_031672.1 Alpha-arrestin family member; activation through a switch in its modification state relays glucose signaling to transporter endocytosis; contributes to desensitization of agonist-occupied Ste2p by Rsp5p-dependent internalization and to recovery from pheromone induced G1 arrest; interacts with ubiquitin ligase Rsp5p via its 2 PY motifs; protein abundance increases in response to DNA replication stress; ROD1 has a paralog, ROG3, that arose from the whole genome duplication; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 8621680]; GO_function: GO:0031625 - ubiquitin protein ligase binding [Evidence IPI] [PMID 18976803]; GO_process: GO:0042493 - response to drug [Evidence IMP] [PMID 12163175]; GO_process: GO:0070086 - ubiquitin-dependent endocytosis [Evidence ISA] [PMID 18976803]; Rod1p 2014929 ROD1 30037678 ROD1 Sugiyamaella lignohabitans Rod1p XP_018734851.1 2012986 R 796027 CDS AWJ20_626 30037679 2021238..2023097 A 1 NC_031672.1 Member of the multi-drug and toxin extrusion (MATE) family; the MATE family is part of the multidrug/oligosaccharidyl-lipid/polysaccharide (MOP) exporter superfamily; overproduction confers ethionine resistance and accumulation of S-adenosylmethionine; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA,IEA]; GO_function: GO:0015297 - antiporter activity [Evidence IEA]; GO_function: GO:0015297 - antiporter activity [Evidence ISS] [PMID 12603313]; GO_function: GO:0015238 - drug transmembrane transporter activity [Evidence IEA]; GO_process: GO:0006556 - S-adenosylmethionine biosynthetic process [Evidence IMP] [PMID 18592490]; GO_process: GO:0006855 - drug transmembrane transport [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence ISS] [PMID 12603313]; GO_process: GO:0006810 - transport [Evidence IEA]; Erc1p 2023097 ERC1 30037679 ERC1 Sugiyamaella lignohabitans Erc1p XP_018734852.1 2021238 D 796027 CDS AWJ20_627 30037680 complement(2023352..2024557) A 1 NC_031672.1 C3HC4-type RING-finger peroxin and E3 ubiquitin ligase; required for peroxisome biogenesis and peroxisomal matrix protein import; forms translocation subcomplex with Pex2p and Pex10p; mutations in human homolog cause peroxisomal disorder; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0005779 - integral component of peroxisomal membrane [Evidence IEA]; GO_component: GO:0005779 - integral component of peroxisomal membrane [Evidence IDA] [PMID 11370741]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005778 - peroxisomal membrane [Evidence IEA]; GO_component: GO:0005777 - peroxisome [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0008022 - protein C-terminus binding [Evidence IEA]; GO_function: GO:0005515 - protein binding [Evidence IPI] [PMID 12667447]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence IDA] [PMID 19687296]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence IDA] [PMID 22471590]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0016558 - protein import into peroxisome matrix [Evidence IMP] [PMID 11370741]; GO_process: GO:0016558 - protein import into peroxisome matrix [Evidence IMP] [PMID 15536088]; GO_process: GO:0016558 - protein import into peroxisome matrix [Evidence IMP] [PMID 9090384]; GO_process: GO:0006625 - protein targeting to peroxisome [Evidence IEA]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; ubiquitin-protein ligase peroxin 12 2024557 PEX12 30037680 PEX12 Sugiyamaella lignohabitans ubiquitin-protein ligase peroxin 12 XP_018734853.1 2023352 R 796027 CDS AWJ20_628 30037681 2025075..2026526 A 1 NC_031672.1 uncharacterized protein 2026526 30037681 AWJ20_628 Sugiyamaella lignohabitans uncharacterized protein XP_018734854.1 2025075 D 796027 CDS AWJ20_629 30037682 complement(2026600..2027628) A 1 NC_031672.1 1,3-beta-glucanosyltransferase; involved with Gas2p in spore wall assembly; has similarity to Gas1p; localizes to the cell wall; GO_component: GO:0031225 - anchored component of membrane [Evidence IEA]; GO_component: GO:0009277 - fungal-type cell wall [Evidence IDA] [PMID 10383953]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_function: GO:0042124 - 1,3-beta-glucanosyltransferase activity [Evidence ISS] [PMID 10769178]; GO_function: GO:0042124 - 1,3-beta-glucanosyltransferase activity [Evidence IDA] [PMID 17397106]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0030476 - ascospore wall assembly [Evidence IGI,IMP] [PMID 17189486]; GO_process: GO:0005975 - carbohydrate metabolic process [Evidence IEA]; Gas4p 2027628 GAS4 30037682 GAS4 Sugiyamaella lignohabitans Gas4p XP_018734855.1 2026600 R 796027 CDS AWJ20_630 30037684 complement(2028631..2029407) A 1 NC_031672.1 Peroxisomal 2,4-dienoyl-CoA reductase; auxiliary enzyme of fatty acid beta-oxidation; homodimeric enzyme required for growth and sporulation on petroselineate medium; expression induced during late sporulation and in the presence of oleate; GO_component: GO:0005782 - peroxisomal matrix [Evidence IDA] [PMID 9268358]; GO_component: GO:0005777 - peroxisome [Evidence IEA,IEA]; GO_function: GO:0008670 - 2,4-dienoyl-CoA reductase (NADPH) activity [Evidence IEA]; GO_function: GO:0008670 - 2,4-dienoyl-CoA reductase (NADPH) activity [Evidence IDA,ISS] [PMID 9268358]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_process: GO:0030437 - ascospore formation [Evidence IEP,IMP] [PMID 7969036]; GO_process: GO:0009062 - fatty acid catabolic process [Evidence IDA,ISS] [PMID 9268358]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; GO_process: GO:0030435 - sporulation resulting in formation of a cellular spore [Evidence IEA]; Sps19p 2029407 SPS19 30037684 SPS19 Sugiyamaella lignohabitans Sps19p XP_018734856.1 2028631 R 796027 CDS AWJ20_631 30037685 2029751..2030872 A 1 NC_031672.1 Xylitol dehydrogenase; converts xylitol to D-xylulose; expression induced by xylose, even though this pentose sugar is not well utilized by S. cerevisiae; null mutant has cell wall defect; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0046526 - D-xylulose reductase activity [Evidence IEA]; GO_function: GO:0046526 - D-xylulose reductase activity [Evidence IDA] [PMID 10486580]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0042732 - D-xylose metabolic process [Evidence IEA]; GO_process: GO:0019569 - L-arabinose catabolic process to xylulose 5-phosphate [Evidence IEA]; GO_process: GO:0005975 - carbohydrate metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0005999 - xylulose biosynthetic process [Evidence IDA,IEP] [PMID 10486580]; D-xylulose reductase XYL2 2030872 XYL2 30037685 XYL2 Sugiyamaella lignohabitans D-xylulose reductase XYL2 XP_018734857.1 2029751 D 796027 CDS AWJ20_632 30037686 complement(2031763..2033307) A 1 NC_031672.1 phosphatidylinositol-4-phosphate 5-kinase its3 2033307 30037686 AWJ20_632 Sugiyamaella lignohabitans phosphatidylinositol-4-phosphate 5-kinase its3 XP_018734858.1 2031763 R 796027 CDS AWJ20_633 30037687 complement(2034422..2035489) A 1 NC_031672.1 GTP-binding protein RBG1 2035489 RBG1 30037687 RBG1 Sugiyamaella lignohabitans GTP-binding protein RBG1 XP_018734859.1 2034422 R 796027 CDS AWJ20_634 30037688 2036645..2039749 A 1 NC_031672.1 Translation initiation factor eIF5B; GTPase that promotes Met-tRNAiMet binding to ribosomes and ribosomal subunit joining; promotes GTP-dependent maturation of 18S rRNA by Nob1p; protein abundance increases in response to DNA replication stress; homolog of bacterial IF2; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0022627 - cytosolic small ribosomal subunit [Evidence IDA] [PMID 9624054]; GO_component: GO:0033290 - eukaryotic 48S preinitiation complex [Evidence IDA] [PMID 17242201]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 23212245]; GO_function: GO:0005525 - GTP binding [Evidence IEA,IEA]; GO_function: GO:0005525 - GTP binding [Evidence IDA] [PMID 21335519]; GO_function: GO:0003924 - GTPase activity [Evidence IEA]; GO_function: GO:0003924 - GTPase activity [Evidence IMP,ISS] [PMID 12471154]; GO_function: GO:0003924 - GTPase activity [Evidence IDA,IMP] [PMID 19029250]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0005515 - protein binding [Evidence IPI] [PMID 10982835]; GO_function: GO:0043022 - ribosome binding [Evidence IDA] [PMID 21335519]; GO_function: GO:0003743 - translation initiation factor activity [Evidence IEA]; GO_function: GO:0003743 - translation initiation factor activity [Evidence IDA] [PMID 12008673]; GO_function: GO:0003743 - translation initiation factor activity [Evidence IDA] [PMID 9624054]; GO_function: GO:0031369 - translation initiation factor binding [Evidence IDA] [PMID 10982835]; GO_process: GO:0006184 - GTP catabolic process [Evidence IEA]; GO_process: GO:0001732 - formation of translation initiation complex [Evidence IDA] [PMID 12008673]; GO_process: GO:0001732 - formation of translation initiation complex [Evidence IMP] [PMID 17242201]; GO_process: GO:0000462 - maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 22751017]; GO_process: GO:0006446 - regulation of translational initiation [Evidence IMP] [PMID 12507428]; GO_process: GO:0042255 - ribosome assembly [Evidence IMP] [PMID 22770215]; GO_process: GO:0006412 - translation [Evidence IEA]; GO_process: GO:0006413 - translational initiation [Evidence IEA]; translation initiation factor eIF5B 2039749 FUN12 30037688 FUN12 Sugiyamaella lignohabitans translation initiation factor eIF5B XP_018734860.1 2036645 D 796027 CDS AWJ20_635 30037689 complement(2038825..2039091) A 1 NC_031672.1 uncharacterized protein 2039091 30037689 AWJ20_635 Sugiyamaella lignohabitans uncharacterized protein XP_018734861.1 2038825 R 796027 CDS AWJ20_636 30037690 complement(2040602..2041189) A 1 NC_031672.1 Isopentenyl diphosphate:dimethylallyl diphosphate isomerase; catalyzes an essential activation step in the isoprenoid biosynthetic pathway; required for viability; isopentenyl diphosphate:dimethylallyl diphosphate isomerase is also known as IPP isomerase; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016853 - isomerase activity [Evidence IEA]; GO_function: GO:0004452 - isopentenyl-diphosphate delta-isomerase activity [Evidence IEA,IEA]; GO_function: GO:0004452 - isopentenyl-diphosphate delta-isomerase activity [Evidence IDA] [PMID 2681212]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_process: GO:0050992 - dimethylallyl diphosphate biosynthetic process [Evidence IEA]; GO_process: GO:0045337 - farnesyl diphosphate biosynthetic process [Evidence IDA] [PMID 7858969]; GO_process: GO:0008299 - isoprenoid biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0006694 - steroid biosynthetic process [Evidence IEA]; GO_process: GO:0008202 - steroid metabolic process [Evidence IEA]; GO_process: GO:0016126 - sterol biosynthetic process [Evidence IEA]; isopentenyl-diphosphate delta-isomerase IDI1 2041189 IDI1 30037690 IDI1 Sugiyamaella lignohabitans isopentenyl-diphosphate delta-isomerase IDI1 XP_018734862.1 2040602 R 796027 CDS AWJ20_637 30037691 complement(2041844..2045182) A 1 NC_031672.1 uncharacterized protein 2045182 30037691 AWJ20_637 Sugiyamaella lignohabitans uncharacterized protein XP_018734863.1 2041844 R 796027 CDS AWJ20_639 30037693 2047056..2049074 A 1 NC_031672.1 Second largest subunit of DNA polymerase II (DNA polymerase epsilon); required for maintenance of fidelity of chromosomal replication; essential motif in C-terminus is required for formation of the four-subunit Pol epsilon; expression peaks at the G1/S phase boundary; Cdc28p substrate; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 15282802]; GO_component: GO:0008622 - epsilon DNA polymerase complex [Evidence IDA] [PMID 12571237]; GO_component: GO:0008622 - epsilon DNA polymerase complex [Evidence IDA] [PMID 14673157]; GO_component: GO:0008622 - epsilon DNA polymerase complex [Evidence IDA] [PMID 2406268]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 15282802]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA,IEA,IEA]; GO_function: GO:0003887 - DNA-directed DNA polymerase activity [Evidence IDA] [PMID 12882968]; GO_function: GO:0003887 - DNA-directed DNA polymerase activity [Evidence IDA] [PMID 16369485]; GO_function: GO:0003690 - double-stranded DNA binding [Evidence IDA] [PMID 14622139]; GO_function: GO:0003690 - double-stranded DNA binding [Evidence IDA] [PMID 16916794]; GO_function: GO:0016779 - nucleotidyltransferase activity [Evidence IEA]; GO_function: GO:0003697 - single-stranded DNA binding [Evidence IDA] [PMID 14622139]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006260 - DNA replication [Evidence IEA,IEA]; GO_process: GO:0006261 - DNA-dependent DNA replication [Evidence IDA] [PMID 12882968]; GO_process: GO:0006261 - DNA-dependent DNA replication [Evidence IDA] [PMID 14622139]; GO_process: GO:0006261 - DNA-dependent DNA replication [Evidence IDA] [PMID 16369485]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0042276 - error-prone translesion synthesis [Evidence IDA,IMP] [PMID 19776424]; GO_process: GO:0070868 - heterochromatin organization involved in chromatin silencing [Evidence IC] [PMID 14673157]; GO_process: GO:0045005 - maintenance of fidelity involved in DNA-dependent DNA replication [Evidence IMP] [PMID 18245343]; GO_process: GO:0045005 - maintenance of fidelity involved in DNA-dependent DNA replication [Evidence IMP] [PMID 19463834]; Dpb2p 2049074 DPB2 30037693 DPB2 Sugiyamaella lignohabitans Dpb2p XP_018734864.1 2047056 D 796027 CDS AWJ20_640 30037695 complement(2049292..2049954) A 1 NC_031672.1 Beta subunit of Type II geranylgeranyltransferase; required for vesicular transport between the endoplasmic reticulum and the Golgi; provides a membrane attachment moiety to Rab-like proteins Ypt1p and Sec4p; GO_component: GO:0005968 - Rab-protein geranylgeranyltransferase complex [Evidence IDA] [PMID 8183917]; GO_component: GO:0005968 - Rab-protein geranylgeranyltransferase complex [Evidence IPI] [PMID 8232542]; GO_component: GO:0005968 - Rab-protein geranylgeranyltransferase complex [Evidence IDA] [PMID 8583924]; GO_component: GO:0005968 - Rab-protein geranylgeranyltransferase complex [Evidence IDA] [PMID 8756702]; GO_function: GO:0004663 - Rab geranylgeranyltransferase activity [Evidence IEA]; GO_function: GO:0004663 - Rab geranylgeranyltransferase activity [Evidence IDA] [PMID 8756702]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004659 - prenyltransferase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006888 - ER to Golgi vesicle-mediated transport [Evidence IMP] [PMID 3312234]; GO_process: GO:0006888 - ER to Golgi vesicle-mediated transport [Evidence IMP] [PMID 8232541]; GO_process: GO:0018344 - protein geranylgeranylation [Evidence IDA] [PMID 8756702]; GO_process: GO:0006612 - protein targeting to membrane [Evidence IMP] [PMID 1903184]; Bet2p 2049954 BET2 30037695 BET2 Sugiyamaella lignohabitans Bet2p XP_018734865.1 2049292 R 796027 CDS AWJ20_641 30037696 complement(2050695..2051498) A 1 NC_031672.1 73 kDa subunit of the SWI/SNF chromatin remodeling complex; involved in transcriptional regulation; relocates to the cytosol under hypoxic conditions; deletion mutants are temperature-sensitive; SNF12 has a paralog, RSC6, that arose from the whole genome duplication; GO_component: GO:0016514 - SWI/SNF complex [Evidence IDA] [PMID 18644858]; GO_component: GO:0016514 - SWI/SNF complex [Evidence IDA] [PMID 8127913]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 22932476]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22932476]; GO_function: GO:0015616 - DNA translocase activity [Evidence IDA] [PMID 17188033]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IGI] [PMID 8804308]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 8816487]; GO_process: GO:0061412 - positive regulation of transcription from RNA polymerase II promoter in response to amino acid starvation [Evidence IMP] [PMID 10549298]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Snf12p 2051498 SNF12 30037696 SNF12 Sugiyamaella lignohabitans Snf12p XP_018734866.1 2050695 R 796027 CDS AWJ20_642 30037697 complement(2051677..2052225) A 1 NC_031672.1 73 kDa subunit of the SWI/SNF chromatin remodeling complex; involved in transcriptional regulation; relocates to the cytosol under hypoxic conditions; deletion mutants are temperature-sensitive; SNF12 has a paralog, RSC6, that arose from the whole genome duplication; GO_component: GO:0016514 - SWI/SNF complex [Evidence IDA] [PMID 18644858]; GO_component: GO:0016514 - SWI/SNF complex [Evidence IDA] [PMID 8127913]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 22932476]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22932476]; GO_function: GO:0015616 - DNA translocase activity [Evidence IDA] [PMID 17188033]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IGI] [PMID 8804308]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 8816487]; GO_process: GO:0061412 - positive regulation of transcription from RNA polymerase II promoter in response to amino acid starvation [Evidence IMP] [PMID 10549298]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Snf12p 2052225 SNF12 30037697 SNF12 Sugiyamaella lignohabitans Snf12p XP_018734867.1 2051677 R 796027 CDS AWJ20_643 30037698 complement(2052551..2054752) A 1 NC_031672.1 Component of the Mcm2-7 hexameric helicase complex; MCM complex is important for priming origins of DNA replication in G1 and becomes an active ATP-dependent helicase that promotes DNA melting and elongation when activated by Cdc7p-Dbf4p in S-phase; GO_component: GO:0031261 - DNA replication preinitiation complex [Evidence IPI] [PMID 9554851]; GO_component: GO:0042555 - MCM complex [Evidence IEA]; GO_component: GO:0042555 - MCM complex [Evidence IDA] [PMID 12480933]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 2279699]; GO_component: GO:0000784 - nuclear chromosome, telomeric region [Evidence IDA] [PMID 19005221]; GO_component: GO:0005656 - nuclear pre-replicative complex [Evidence IDA] [PMID 16824194]; GO_component: GO:0005656 - nuclear pre-replicative complex [Evidence IDA] [PMID 9335335]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 2279699]; GO_component: GO:0031298 - replication fork protection complex [Evidence IDA] [PMID 16531994]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0003678 - DNA helicase activity [Evidence IEA]; GO_function: GO:0003678 - DNA helicase activity [Evidence IDA] [PMID 18657510]; GO_function: GO:0003688 - DNA replication origin binding [Evidence IDA] [PMID 11756674]; GO_function: GO:0003688 - DNA replication origin binding [Evidence IDA] [PMID 16824194]; GO_function: GO:0003682 - chromatin binding [Evidence IDA] [PMID 10075735]; GO_function: GO:0003682 - chromatin binding [Evidence IDA] [PMID 9159120]; GO_function: GO:0004386 - helicase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_function: GO:0003697 - single-stranded DNA binding [Evidence IMP] [PMID 17895243]; GO_function: GO:0017116 - single-stranded DNA-dependent ATP-dependent DNA helicase activity [Evidence IDA] [PMID 18657510]; GO_process: GO:0032508 - DNA duplex unwinding [Evidence IEA]; GO_process: GO:0006260 - DNA replication [Evidence IEA,IEA]; GO_process: GO:0006270 - DNA replication initiation [Evidence IEA]; GO_process: GO:0006270 - DNA replication initiation [Evidence IMP] [PMID 2279699]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0006348 - chromatin silencing at telomere [Evidence IMP] [PMID 16980387]; GO_process: GO:0000727 - double-strand break repair via break-induced replication [Evidence IMP] [PMID 20516198]; GO_process: GO:0006343 - establishment of chromatin silencing [Evidence IMP] [PMID 12750362]; GO_process: GO:0031939 - negative regulation of chromatin silencing at telomere [Evidence IMP] [PMID 19005221]; GO_process: GO:0033260 - nuclear cell cycle DNA replication [Evidence IMP] [PMID 2044962]; GO_process: GO:0006267 - pre-replicative complex assembly involved in nuclear cell cycle DNA replication [Evidence IDA] [PMID 16824194]; GO_process: GO:0006267 - pre-replicative complex assembly involved in nuclear cell cycle DNA replication [Evidence IPI] [PMID 9335335]; GO_process: GO:0030174 - regulation of DNA-dependent DNA replication initiation [Evidence IMP] [PMID 9990508]; MCM DNA helicase complex subunit MCM5 2054752 MCM5 30037698 MCM5 Sugiyamaella lignohabitans MCM DNA helicase complex subunit MCM5 XP_018734868.1 2052551 R 796027 CDS AWJ20_644 30037699 2055488..2057122 A 1 NC_031672.1 uncharacterized protein 2057122 30037699 AWJ20_644 Sugiyamaella lignohabitans uncharacterized protein XP_018734869.1 2055488 D 796027 CDS AWJ20_645 30037700 complement(2057528..2059534) A 1 NC_031672.1 uncharacterized protein 2059534 30037700 AWJ20_645 Sugiyamaella lignohabitans uncharacterized protein XP_018734870.1 2057528 R 796027 CDS AWJ20_647 30037702 2066221..2067747 A 1 NC_031672.1 Bifunctional triacylglycerol lipase and LPE acyltransferase; major lipid particle-localized triacylglycerol (TAG) lipase; catalyzes acylation of lysophosphatidylethanolamine (LPE), a function which is essential for sporulation; protein level and stability of Tgl3p are markedly reduced in the absence of lipid droplets; required with Tgl4p for timely bud formation; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0005811 - lipid particle [Evidence IEA,IEA]; GO_component: GO:0005811 - lipid particle [Evidence IDA] [PMID 10515935]; GO_component: GO:0005811 - lipid particle [Evidence IDA] [PMID 16267052]; GO_component: GO:0005811 - lipid particle [Evidence IDA] [PMID 24390141]; GO_component: GO:0005811 - lipid particle [Evidence IDA] [PMID 24868093]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0071618 - lysophosphatidylethanolamine acyltransferase activity [Evidence IDA] [PMID 20016004]; GO_function: GO:0004806 - triglyceride lipase activity [Evidence IEA]; GO_function: GO:0004806 - triglyceride lipase activity [Evidence IDA,IMP] [PMID 12682047]; GO_process: GO:0007114 - cell budding [Evidence IGI,IMP] [PMID 19150427]; GO_process: GO:0044255 - cellular lipid metabolic process [Evidence IMP] [PMID 10515935]; GO_process: GO:0016042 - lipid catabolic process [Evidence IEA]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA,IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0019433 - triglyceride catabolic process [Evidence IGI,IMP] [PMID 16267052]; Tgl3p 2067747 TGL3 30037702 TGL3 Sugiyamaella lignohabitans Tgl3p XP_018734871.1 2066221 D 796027 CDS AWJ20_648 30037703 complement(2067945..2068733) A 1 NC_031672.1 Subunit of hexameric RecA-like ATPase Elp456 Elongator subcomplex; which is required for modification of wobble nucleosides in tRNA; required for Elongator structural integrity; GO_component: GO:0033588 - Elongator holoenzyme complex [Evidence IDA] [PMID 11689709]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0016887 - ATPase activity [Evidence IDA,IMP] [PMID 22343726]; GO_function: GO:0000049 - tRNA binding [Evidence IDA] [PMID 22343726]; GO_process: GO:0032447 - protein urmylation [Evidence IMP] [PMID 14551258]; GO_process: GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 11689709]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0002098 - tRNA wobble uridine modification [Evidence IMP] [PMID 18755837]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Elongator subunit ELP6 2068733 ELP6 30037703 ELP6 Sugiyamaella lignohabitans Elongator subunit ELP6 XP_018734872.1 2067945 R 796027 CDS AWJ20_649 30037704 2069315..2070607 A 1 NC_031672.1 Ribosome-associated chaperone; functions in ribosome biogenesis and, in partnership with Ssz1p and SSb1/2, as a chaperone for nascent polypeptide chains; contains a DnaJ domain and functions as a J-protein partner for Ssb1p and Ssb2p; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 20368619]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005730 - nucleolus [Evidence IMP] [PMID 20368619]; GO_component: GO:0005844 - polysome [Evidence IDA] [PMID 16413483]; GO_component: GO:0005840 - ribosome [Evidence IDA] [PMID 17242366]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0051082 - unfolded protein binding [Evidence NAS] [PMID 9707440]; GO_process: GO:0006457 - protein folding [Evidence NAS] [PMID 9707440]; GO_process: GO:0006364 - rRNA processing [Evidence IMP] [PMID 20368619]; GO_process: GO:0006450 - regulation of translational fidelity [Evidence IMP] [PMID 15456889]; GO_process: GO:0000054 - ribosomal subunit export from nucleus [Evidence IMP] [PMID 20368619]; GO_process: GO:0006452 - translational frameshifting [Evidence IMP] [PMID 16607023]; zuotin 2070607 ZUO1 30037704 ZUO1 Sugiyamaella lignohabitans zuotin XP_018734873.1 2069315 D 796027 CDS AWJ20_650 30037706 2073339..2075477 A 1 NC_031672.1 Apyrase with wide substrate specificity; helps prevent inhibition of glycosylation by hydrolyzing nucleoside tri- and diphosphates that inhibit glycotransferases; partially redundant with Gda1p; mediates adenovirus E4orf4-induced toxicity; GO_component: GO:0030137 - COPI-coated vesicle [Evidence IDA] [PMID 14562095]; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA,IEA]; GO_component: GO:0005794 - Golgi apparatus [Evidence IDA] [PMID 14562095]; GO_component: GO:0000139 - Golgi membrane [Evidence IDA] [PMID 10551827]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0016020 - membrane [Evidence IDA] [PMID 10409709]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA,IEA]; GO_function: GO:0017110 - nucleoside-diphosphatase activity [Evidence IDA] [PMID 10409709]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IDA] [PMID 10409709]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0006486 - protein glycosylation [Evidence IEA]; GO_process: GO:0006486 - protein glycosylation [Evidence IMP] [PMID 10409709]; GO_process: GO:0006665 - sphingolipid metabolic process [Evidence IEA]; Ynd1p 2075477 YND1 30037706 YND1 Sugiyamaella lignohabitans Ynd1p XP_018734874.1 2073339 D 796027 CDS AWJ20_651 30037707 complement(join(2077590..2078777,2078957..2078980)) A 1 NC_031672.1 Heavy metal ion homeostasis protein; facilitates trafficking of Smf1p and Smf2p metal transporters to the vacuole where they are degraded, controls metal ion transport, prevents metal hyperaccumulation, functions in copper detoxification; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA,IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 9115231]; GO_component: GO:0000324 - fungal-type vacuole [Evidence IDA] [PMID 23708375]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 14988731]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA,IEA]; GO_function: GO:0005515 - protein binding [Evidence IPI] [PMID 14988731]; GO_process: GO:0030001 - metal ion transport [Evidence IMP] [PMID 9115231]; GO_process: GO:0006623 - protein targeting to vacuole [Evidence IMP] [PMID 14988731]; GO_process: GO:0006623 - protein targeting to vacuole [Evidence IMP] [PMID 9988727]; GO_process: GO:0006950 - response to stress [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0006511 - ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 16456538]; Bsd2p 2078980 BSD2 30037707 BSD2 Sugiyamaella lignohabitans Bsd2p XP_018734875.1 2077590 R 796027 CDS AWJ20_652 30037708 2080467..2082809 A 1 NC_031672.1 Putative transporter in the major facilitator superfamily; member of the 12-spanner drug:H(+) antiporter DHA1 family; mutations in membrane-spanning domains permit cation and histidinol uptake; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005886 - plasma membrane [Evidence ISS] [PMID 8955402]; GO_function: GO:0015665 - alcohol transmembrane transporter activity [Evidence IMP] [PMID 2405251]; GO_function: GO:0022890 - inorganic cation transmembrane transporter activity [Evidence IMP] [PMID 8955402]; GO_process: GO:0006812 - cation transport [Evidence IMP] [PMID 8955402]; GO_process: GO:0015850 - organic hydroxy compound transport [Evidence IMP] [PMID 2405251]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Hol1p 2082809 HOL1 30037708 HOL1 Sugiyamaella lignohabitans Hol1p XP_018734876.1 2080467 D 796027 CDS AWJ20_653 30037709 2083806..2085335 A 1 NC_031672.1 Putative tryptophan 2,3-dioxygenase or indoleamine 2,3-dioxygenase; required for de novo biosynthesis of NAD from tryptophan via kynurenine; interacts genetically with telomere capping gene CDC13; regulated by Hst1p and Aftp; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_function: GO:0051213 - dioxygenase activity [Evidence IEA]; GO_function: GO:0020037 - heme binding [Evidence IEA]; GO_function: GO:0033754 - indoleamine 2,3-dioxygenase activity [Evidence IEA]; GO_function: GO:0033754 - indoleamine 2,3-dioxygenase activity [Evidence IDA] [PMID 21170645]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_process: GO:0034354 - 'de novo' NAD biosynthetic process from tryptophan [Evidence IGI] [PMID 12062417]; GO_process: GO:0009435 - NAD biosynthetic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; GO_process: GO:0019441 - tryptophan catabolic process to kynurenine [Evidence IC] [PMID 21170645]; dioxygenase BNA2 2085335 BNA2 30037709 BNA2 Sugiyamaella lignohabitans dioxygenase BNA2 XP_018734877.1 2083806 D 796027 CDS AWJ20_654 30037710 complement(2086837..2088876) A 1 NC_031672.1 uncharacterized protein 2088876 30037710 AWJ20_654 Sugiyamaella lignohabitans uncharacterized protein XP_018734878.1 2086837 R 796027 CDS AWJ20_655 30037711 2093023..2093823 A 1 NC_031672.1 uncharacterized protein 2093823 30037711 AWJ20_655 Sugiyamaella lignohabitans uncharacterized protein XP_018734879.1 2093023 D 796027 CDS AWJ20_656 30037712 2094120..2094557 A 1 NC_031672.1 uncharacterized protein 2094557 30037712 AWJ20_656 Sugiyamaella lignohabitans uncharacterized protein XP_018734880.1 2094120 D 796027 CDS AWJ20_657 30037713 2095817..2096539 A 1 NC_031672.1 Mitochondrial malic enzyme; catalyzes the oxidative decarboxylation of malate to pyruvate, which is a key intermediate in sugar metabolism and a precursor for synthesis of several amino acids; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 9603875]; GO_function: GO:0051287 - NAD binding [Evidence IEA]; GO_function: GO:0004471 - malate dehydrogenase (decarboxylating) (NAD+) activity [Evidence IEA,IEA]; GO_function: GO:0004470 - malic enzyme activity [Evidence IEA]; GO_function: GO:0004470 - malic enzyme activity [Evidence IDA,ISS] [PMID 9603875]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0008948 - oxaloacetate decarboxylase activity [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_process: GO:0006520 - cellular amino acid metabolic process [Evidence IMP] [PMID 9603875]; GO_process: GO:0006108 - malate metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0006090 - pyruvate metabolic process [Evidence IMP] [PMID 9603875]; malate dehydrogenase (oxaloacetate-decarboxylating) 2096539 MAE1 30037713 MAE1 Sugiyamaella lignohabitans malate dehydrogenase (oxaloacetate-decarboxylating) XP_018734881.1 2095817 D 796027 CDS AWJ20_658 30037714 2096581..2097129 A 1 NC_031672.1 Mitochondrial malic enzyme; catalyzes the oxidative decarboxylation of malate to pyruvate, which is a key intermediate in sugar metabolism and a precursor for synthesis of several amino acids; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 9603875]; GO_function: GO:0051287 - NAD binding [Evidence IEA]; GO_function: GO:0004471 - malate dehydrogenase (decarboxylating) (NAD+) activity [Evidence IEA,IEA]; GO_function: GO:0004470 - malic enzyme activity [Evidence IEA]; GO_function: GO:0004470 - malic enzyme activity [Evidence IDA,ISS] [PMID 9603875]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0008948 - oxaloacetate decarboxylase activity [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_process: GO:0006520 - cellular amino acid metabolic process [Evidence IMP] [PMID 9603875]; GO_process: GO:0006108 - malate metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0006090 - pyruvate metabolic process [Evidence IMP] [PMID 9603875]; malate dehydrogenase (oxaloacetate-decarboxylating) 2097129 MAE1 30037714 MAE1 Sugiyamaella lignohabitans malate dehydrogenase (oxaloacetate-decarboxylating) XP_018734882.1 2096581 D 796027 CDS AWJ20_659 30037715 2097197..2097502 A 1 NC_031672.1 Mitochondrial malic enzyme; catalyzes the oxidative decarboxylation of malate to pyruvate, which is a key intermediate in sugar metabolism and a precursor for synthesis of several amino acids; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 9603875]; GO_function: GO:0051287 - NAD binding [Evidence IEA]; GO_function: GO:0004471 - malate dehydrogenase (decarboxylating) (NAD+) activity [Evidence IEA,IEA]; GO_function: GO:0004470 - malic enzyme activity [Evidence IEA]; GO_function: GO:0004470 - malic enzyme activity [Evidence IDA,ISS] [PMID 9603875]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0008948 - oxaloacetate decarboxylase activity [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_process: GO:0006520 - cellular amino acid metabolic process [Evidence IMP] [PMID 9603875]; GO_process: GO:0006108 - malate metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0006090 - pyruvate metabolic process [Evidence IMP] [PMID 9603875]; malate dehydrogenase (oxaloacetate-decarboxylating) 2097502 MAE1 30037715 MAE1 Sugiyamaella lignohabitans malate dehydrogenase (oxaloacetate-decarboxylating) XP_018734883.1 2097197 D 796027 CDS AWJ20_660 30037717 complement(2097582..2100494) A 1 NC_031672.1 Subunit of the ASTRA complex, involved in chromatin remodeling; telomere length regulator involved in the stability or biogenesis of PIKKs such as TORC1; similar to S. pombe Tti1p; detected in highly purified mitochondria in high-throughput studies; GO_component: GO:0070209 - ASTRA complex [Evidence IDA] [PMID 19040720]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0016568 - chromatin modification [Evidence IEA]; Tti1p 2100494 TTI1 30037717 TTI1 Sugiyamaella lignohabitans Tti1p XP_018734884.1 2097582 R 796027 CDS AWJ20_661 30037718 complement(2101399..2102076) A 1 NC_031672.1 TFIIA large subunit; involved in transcriptional activation, acts as antirepressor or as coactivator; required, along with Toa2p, for ribosomal protein gene transcription in vivo; homologous to largest and second largest subunits of human and Drosophila TFIIA; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005672 - transcription factor TFIIA complex [Evidence IEA]; GO_component: GO:0005672 - transcription factor TFIIA complex [Evidence IDA] [PMID 7862117]; GO_function: GO:0017025 - TBP-class protein binding [Evidence IDA] [PMID 7604282]; GO_function: GO:0001129 - TBP-class protein binding RNA polymerase II transcription factor activity involved in preinitiation complex assembly [Evidence IDA,IGI] [PMID 10567590]; GO_process: GO:0051123 - RNA polymerase II transcriptional preinitiation complex assembly [Evidence IDA,IGI] [PMID 10567590]; GO_process: GO:0006367 - transcription initiation from RNA polymerase II promoter [Evidence IEA]; GO_process: GO:0006367 - transcription initiation from RNA polymerase II promoter [Evidence IDA] [PMID 7862117]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Toa1p 2102076 TOA1 30037718 TOA1 Sugiyamaella lignohabitans Toa1p XP_018734885.1 2101399 R 796027 CDS AWJ20_662 30037719 complement(2105069..2106928) A 1 NC_031672.1 ferroxidase FET3 2106928 FET3 30037719 FET3 Sugiyamaella lignohabitans ferroxidase FET3 XP_018734886.1 2105069 R 796027 CDS AWJ20_663 30037720 2106047..2106943 A 1 NC_031672.1 uncharacterized protein 2106943 30037720 AWJ20_663 Sugiyamaella lignohabitans uncharacterized protein XP_018734887.1 2106047 D 796027 CDS AWJ20_664 30037721 2111550..2112638 A 1 NC_031672.1 High affinity iron permease; involved in the transport of iron across the plasma membrane; forms complex with Fet3p; expression is regulated by iron; protein abundance increases in response to DNA replication stress; GO_component: GO:0033573 - high affinity iron permease complex [Evidence IDA] [PMID 16522632]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 10748025]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 16700543]; GO_function: GO:0005381 - iron ion transmembrane transporter activity [Evidence IDA] [PMID 16700543]; GO_function: GO:0005381 - iron ion transmembrane transporter activity [Evidence IDA] [PMID 8599111]; GO_process: GO:1901684 - arsenate ion transmembrane transport [Evidence IGI] [PMID 23295455]; GO_process: GO:0006827 - high-affinity iron ion transport [Evidence IMP] [PMID 16700543]; GO_process: GO:0006827 - high-affinity iron ion transport [Evidence IGI,IMP] [PMID 8599111]; GO_process: GO:0006811 - ion transport [Evidence IEA]; GO_process: GO:0033215 - iron assimilation by reduction and transport [Evidence IMP] [PMID 16700543]; GO_process: GO:0055072 - iron ion homeostasis [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; high-affinity iron permease FTR1 2112638 FTR1 30037721 FTR1 Sugiyamaella lignohabitans high-affinity iron permease FTR1 XP_018734888.1 2111550 D 796027 CDS AWJ20_665 30037722 complement(2112897..2114027) A 1 NC_031672.1 uncharacterized protein 2114027 30037722 AWJ20_665 Sugiyamaella lignohabitans uncharacterized protein XP_018734889.1 2112897 R 796027 CDS AWJ20_666 30037723 complement(2115684..2116730) A 1 NC_031672.1 uncharacterized protein 2116730 30037723 AWJ20_666 Sugiyamaella lignohabitans uncharacterized protein XP_018734890.1 2115684 R 796027 CDS AWJ20_667 30037724 complement(join(2116762..2116795,2116855..2118680)) A 1 NC_031672.1 Subunit of the RNA polymerase II mediator complex; associates with core polymerase subunits to form the RNA polymerase II holoenzyme; required for glucose repression, HO repression, RME1 repression and sporulation; GO_component: GO:0070847 - core mediator complex [Evidence IDA] [PMID 9891034]; GO_component: GO:0016592 - mediator complex [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0001103 - RNA polymerase II repressing transcription factor binding [Evidence IPI] [PMID 11470794]; GO_function: GO:0001104 - RNA polymerase II transcription cofactor activity [Evidence IEA]; GO_process: GO:0000122 - negative regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 16452140]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 16452140]; GO_process: GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence IEA]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Rgr1p 2118680 RGR1 30037724 RGR1 Sugiyamaella lignohabitans Rgr1p XP_018734891.1 2116762 R 796027 CDS AWJ20_668 30037725 2120856..2122955 A 1 NC_031672.1 uncharacterized protein 2122955 30037725 AWJ20_668 Sugiyamaella lignohabitans uncharacterized protein XP_018734892.1 2120856 D 796027 CDS AWJ20_669 30037726 2123346..2123882 A 1 NC_031672.1 serine/threonine protein kinase PRR1 2123882 PRR1 30037726 PRR1 Sugiyamaella lignohabitans serine/threonine protein kinase PRR1 XP_018734893.1 2123346 D 796027 CDS AWJ20_670 30037728 complement(2124291..2124662) A 1 NC_031672.1 Essential RNA-binding component of cleavage and polyadenylation factor; contains five zinc fingers; required for pre-mRNA 3'-end processing and polyadenylation; relocalizes to the cytosol in response to hypoxia; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 22932476]; GO_component: GO:0005847 - mRNA cleavage and polyadenylation specificity factor complex [Evidence IDA] [PMID 12819204]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22932476]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IDA] [PMID 9224719]; GO_function: GO:0046872 - metal ion binding [Evidence IEA,IEA]; GO_process: GO:0006379 - mRNA cleavage [Evidence IMP] [PMID 10899131]; GO_process: GO:0006379 - mRNA cleavage [Evidence IDA,TAS] [PMID 11344258]; GO_process: GO:0006378 - mRNA polyadenylation [Evidence IMP] [PMID 10899131]; GO_process: GO:0006378 - mRNA polyadenylation [Evidence IDA,TAS] [PMID 11344258]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; Yth1p 2124662 YTH1 30037728 YTH1 Sugiyamaella lignohabitans Yth1p XP_018734894.1 2124291 R 796027 CDS AWJ20_671 30037729 complement(2133101..2134204) A 1 NC_031672.1 uncharacterized protein 2134204 30037729 AWJ20_671 Sugiyamaella lignohabitans uncharacterized protein XP_018734895.1 2133101 R 796027 CDS AWJ20_672 30037730 2136087..2137976 A 1 NC_031672.1 GATA zinc finger protein; negatively regulates nitrogen catabolic gene expression by competing with Gat1p for GATA site binding; function requires a repressive carbon source; dimerizes with Dal80p and binds to Tor1p; GZF3 has a paralog, DAL80, that arose from the whole genome duplication; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 19380492]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19111667]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19158363]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 9171383]; GO_function: GO:0000981 - sequence-specific DNA binding RNA polymerase II transcription factor activity [Evidence IDA,IMP] [PMID 19380492]; GO_function: GO:0003700 - sequence-specific DNA binding transcription factor activity [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0051457 - maintenance of protein location in nucleus [Evidence IPI] [PMID 19380492]; GO_process: GO:0000122 - negative regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 9171383]; GO_process: GO:0090295 - nitrogen catabolite repression of transcription [Evidence IGI] [PMID 9106207]; GO_process: GO:0090295 - nitrogen catabolite repression of transcription [Evidence IMP] [PMID 9171383]; GO_process: GO:0090295 - nitrogen catabolite repression of transcription [Evidence IGI,IMP] [PMID 9171427]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA,IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Gzf3p 2137976 GZF3 30037730 GZF3 Sugiyamaella lignohabitans Gzf3p XP_018734896.1 2136087 D 796027 CDS AWJ20_673 30037731 complement(2138376..2139812) A 1 NC_031672.1 uncharacterized protein 2139812 30037731 AWJ20_673 Sugiyamaella lignohabitans uncharacterized protein XP_018734897.1 2138376 R 796027 CDS AWJ20_674 30037732 complement(2140239..2142908) A 1 NC_031672.1 Essential component of the conserved oligomeric Golgi complex; a cytosolic tethering complex (Cog1p through Cog8p) that functions in protein trafficking to mediate fusion of transport vesicles to Golgi compartments; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA]; GO_component: GO:0017119 - Golgi transport complex [Evidence IPI] [PMID 11703943]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0032258 - CVT pathway [Evidence IMP] [PMID 20065092]; GO_process: GO:0006891 - intra-Golgi vesicle-mediated transport [Evidence IGI,IPI] [PMID 11703943]; GO_process: GO:0016236 - macroautophagy [Evidence IMP] [PMID 20065092]; GO_process: GO:0030242 - peroxisome degradation [Evidence IMP] [PMID 20065092]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0000301 - retrograde transport, vesicle recycling within Golgi [Evidence IMP] [PMID 11703943]; GO_process: GO:0006810 - transport [Evidence IEA]; Cog4p 2142908 COG4 30037732 COG4 Sugiyamaella lignohabitans Cog4p XP_018734898.1 2140239 R 796027 CDS AWJ20_675 30037733 2143270..2143923 A 1 NC_031672.1 Phosphoribosyl-glycinamide transformylase; catalyzes a step in the 'de novo' purine nucleotide biosynthetic pathway; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0016742 - hydroxymethyl-, formyl- and related transferase activity [Evidence IEA]; GO_function: GO:0008168 - methyltransferase activity [Evidence IEA]; GO_function: GO:0004644 - phosphoribosylglycinamide formyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0004644 - phosphoribosylglycinamide formyltransferase activity [Evidence IGI,IMP] [PMID 4581491]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006189 - 'de novo' IMP biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0006189 - 'de novo' IMP biosynthetic process [Evidence IMP] [PMID 4581491]; GO_process: GO:0046084 - adenine biosynthetic process [Evidence IMP] [PMID 17247984]; GO_process: GO:0009058 - biosynthetic process [Evidence IEA]; GO_process: GO:0032259 - methylation [Evidence IEA]; GO_process: GO:0006164 - purine nucleotide biosynthetic process [Evidence IEA]; GO_process: GO:0006164 - purine nucleotide biosynthetic process [Evidence IMP] [PMID 4581491]; phosphoribosylglycinamide formyltransferase 2143923 ADE8 30037733 ADE8 Sugiyamaella lignohabitans phosphoribosylglycinamide formyltransferase XP_018734899.1 2143270 D 796027 CDS AWJ20_676 30037734 complement(2144192..2144986) A 1 NC_031672.1 Beta 2 subunit of the 20S proteasome; endopeptidase with trypsin-like activity that cleaves after basic residues; synthesized as a proprotein before being proteolytically processed for assembly into 20S particle; human homolog is subunit Z; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IC] [PMID 9087403]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 18504300]; GO_component: GO:0000502 - proteasome complex [Evidence IEA]; GO_component: GO:0005839 - proteasome core complex [Evidence IEA]; GO_component: GO:0019774 - proteasome core complex, beta-subunit complex [Evidence IDA] [PMID 9087403]; GO_component: GO:0034515 - proteasome storage granule [Evidence IDA] [PMID 18504300]; GO_function: GO:0004175 - endopeptidase activity [Evidence IEA]; GO_function: GO:0004175 - endopeptidase activity [Evidence IMP] [PMID 9207060]; GO_function: GO:0004175 - endopeptidase activity [Evidence IMP] [PMID 9312134]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_function: GO:0004298 - threonine-type endopeptidase activity [Evidence IEA,IEA]; GO_process: GO:0010499 - proteasomal ubiquitin-independent protein catabolic process [Evidence IDA] [PMID 19162040]; GO_process: GO:0043161 - proteasome-mediated ubiquitin-dependent protein catabolic process [Evidence IDA] [PMID 11545745]; GO_process: GO:0043161 - proteasome-mediated ubiquitin-dependent protein catabolic process [Evidence IDA] [PMID 19029916]; GO_process: GO:0006508 - proteolysis [Evidence IEA]; GO_process: GO:0051603 - proteolysis involved in cellular protein catabolic process [Evidence IEA]; proteasome core particle subunit beta 2 2144986 PUP1 30037734 PUP1 Sugiyamaella lignohabitans proteasome core particle subunit beta 2 XP_018734900.1 2144192 R 796027 CDS AWJ20_677 30037735 complement(join(2147693..2151715,2151940..2152083)) A 1 NC_031672.1 Subunit of Elongator complex; Elongator is required for modification of wobble nucleosides in tRNA; maintains structural integrity of Elongator; homolog of human IKAP, mutations in which cause familial dysautonomia (FD); GO_component: GO:0033588 - Elongator holoenzyme complex [Evidence IDA] [PMID 11689709]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 12139626]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 12139626]; GO_function: GO:0000049 - tRNA binding [Evidence IDA] [PMID 24750273]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 11689709]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0002098 - tRNA wobble uridine modification [Evidence IMP] [PMID 18755837]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Elongator subunit IKI3 2152083 IKI3 30037735 IKI3 Sugiyamaella lignohabitans Elongator subunit IKI3 XP_018734901.1 2147693 R 796027 CDS AWJ20_678 30037736 complement(2153777..2156476) A 1 NC_031672.1 Putative ATPase of the AAA family; required for export of pre-ribosomal large subunits from the nucleus; distributed between the nucleolus, nucleoplasm, and nuclear periphery depending on growth conditions; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 11447111]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11447111]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 18559667]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 23212245]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016887 - ATPase activity [Evidence ISS] [PMID 11447111]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0042273 - ribosomal large subunit biogenesis [Evidence IGI,IMP] [PMID 18559667]; GO_process: GO:0000055 - ribosomal large subunit export from nucleus [Evidence IMP] [PMID 11447111]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; putative AAA family ATPase RIX7 2156476 RIX7 30037736 RIX7 Sugiyamaella lignohabitans putative AAA family ATPase RIX7 XP_018734902.1 2153777 R 796027 CDS AWJ20_679 30037737 2157084..2157701 A 1 NC_031672.1 Myristoylated subunit of the ESCRT-III complex; the endosomal sorting complex required for transport of transmembrane proteins into the multivesicular body pathway to the lysosomal/vacuolar lumen; cytoplasmic protein recruited to endosomal membranes; GO_component: GO:0000815 - ESCRT III complex [Evidence IDA] [PMID 12194857]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 12194857]; GO_component: GO:0005768 - endosome [Evidence IEA]; GO_component: GO:0010008 - endosome membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0005515 - protein binding [Evidence IPI] [PMID 15086794]; GO_process: GO:0070676 - intralumenal vesicle formation [Evidence IMP] [PMID 19234443]; GO_process: GO:0070676 - intralumenal vesicle formation [Evidence IGI] [PMID 23444383]; GO_process: GO:0045324 - late endosome to vacuole transport [Evidence IMP] [PMID 12953057]; GO_process: GO:0015031 - protein transport [Evidence IEA,IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0043162 - ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway [Evidence IC] [PMID 15086794]; ESCRT-III subunit protein VPS20 2157701 VPS20 30037737 VPS20 Sugiyamaella lignohabitans ESCRT-III subunit protein VPS20 XP_018734903.1 2157084 D 796027 CDS AWJ20_680 30037739 complement(2157926..2158828) A 1 NC_031672.1 Aminolevulinate dehydratase; a homo-octameric enzyme, catalyzes the conversion of 5-aminolevulinate to porphobilinogen, the second step in heme biosynthesis; enzymatic activity is zinc-dependent; localizes to the cytoplasm and nucleus; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016829 - lyase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA,IEA]; GO_function: GO:0004655 - porphobilinogen synthase activity [Evidence IEA,IEA]; GO_function: GO:0004655 - porphobilinogen synthase activity [Evidence IDA] [PMID 2204246]; GO_function: GO:0004655 - porphobilinogen synthase activity [Evidence IMP] [PMID 2445751]; GO_function: GO:0004655 - porphobilinogen synthase activity [Evidence IMP] [PMID 323256]; GO_process: GO:0006783 - heme biosynthetic process [Evidence IEA]; GO_process: GO:0006783 - heme biosynthetic process [Evidence IMP] [PMID 14559249]; GO_process: GO:0006783 - heme biosynthetic process [Evidence IMP] [PMID 323256]; GO_process: GO:0006779 - porphyrin-containing compound biosynthetic process [Evidence IEA]; GO_process: GO:0006782 - protoporphyrinogen IX biosynthetic process [Evidence IEA]; GO_process: GO:0033014 - tetrapyrrole biosynthetic process [Evidence IEA]; porphobilinogen synthase HEM2 2158828 HEM2 30037739 HEM2 Sugiyamaella lignohabitans porphobilinogen synthase HEM2 XP_018734904.1 2157926 R 796027 CDS AWJ20_681 30037740 2163985..2165289 A 1 NC_031672.1 Beta subunit of succinyl-CoA ligase; succinyl-CoA ligase is a mitochondrial enzyme of the TCA cycle that catalyzes the nucleotide-dependent conversion of succinyl-CoA to succinate; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 9874242]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0004775 - succinate-CoA ligase (ADP-forming) activity [Evidence IEA]; GO_function: GO:0004775 - succinate-CoA ligase (ADP-forming) activity [Evidence IDA,IMP,ISS] [PMID 9874242]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0006104 - succinyl-CoA metabolic process [Evidence TAS] [PMID 9175438]; GO_process: GO:0006104 - succinyl-CoA metabolic process [Evidence IDA] [PMID 9874242]; GO_process: GO:0006099 - tricarboxylic acid cycle [Evidence IEA,IEA]; GO_process: GO:0006099 - tricarboxylic acid cycle [Evidence TAS] [PMID 9175438]; succinate--CoA ligase (GDP-forming) subunit beta 2165289 LSC2 30037740 LSC2 Sugiyamaella lignohabitans succinate--CoA ligase (GDP-forming) subunit beta XP_018734905.1 2163985 D 796027 CDS AWJ20_682 30037741 2166069..2166404 A 1 NC_031672.1 uncharacterized protein 2166404 30037741 AWJ20_682 Sugiyamaella lignohabitans uncharacterized protein XP_018734906.1 2166069 D 796027 CDS AWJ20_683 30037742 2168171..2170354 A 1 NC_031672.1 Polynucleotide kinase present on rDNA; required for efficient transcription termination by RNA polymerase I; functions with Las1p in a conserved mechanism to modulate rRNA processing and ribosome biogenesis; required for cell growth; mRNA is cell-cycle regulated; GO_component: GO:0030874 - nucleolar chromatin [Evidence IPI] [PMID 20814424]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0051731 - polynucleotide 5'-hydroxyl-kinase activity [Evidence IDA] [PMID 20814424]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0000448 - cleavage in ITS2 between 5.8S rRNA and LSU-rRNA of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 23175604]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0006364 - rRNA processing [Evidence IMP] [PMID 12837249]; GO_process: GO:0006363 - termination of RNA polymerase I transcription [Evidence IMP] [PMID 20814424]; Grc3p 2170354 GRC3 30037742 GRC3 Sugiyamaella lignohabitans Grc3p XP_018734907.1 2168171 D 796027 CDS AWJ20_684 30037743 2172059..2172601 A 1 NC_031672.1 uncharacterized protein 2172601 30037743 AWJ20_684 Sugiyamaella lignohabitans uncharacterized protein XP_018734908.1 2172059 D 796027 CDS AWJ20_685 30037744 complement(2172845..2175229) A 1 NC_031672.1 Transcriptional repressor and activator; involved in repression of flocculation-related genes, and activation of stress responsive genes; negatively regulated by cAMP-dependent protein kinase A subunit Tpk2p; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 12024012]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0000978 - RNA polymerase II core promoter proximal region sequence-specific DNA binding [Evidence IDA] [PMID 11399075]; GO_function: GO:0000978 - RNA polymerase II core promoter proximal region sequence-specific DNA binding [Evidence IDA] [PMID 12024012]; GO_function: GO:0000978 - RNA polymerase II core promoter proximal region sequence-specific DNA binding [Evidence IDA] [PMID 9755175]; GO_function: GO:0001103 - RNA polymerase II repressing transcription factor binding [Evidence IPI] [PMID 11399075]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19158363]; GO_function: GO:0003700 - sequence-specific DNA binding transcription factor activity [Evidence IEA]; GO_function: GO:0001133 - sequence-specific transcription regulatory region DNA binding RNA polymerase II transcription factor recruiting transcription factor activity [Evidence IPI] [PMID 11399075]; GO_function: GO:0001133 - sequence-specific transcription regulatory region DNA binding RNA polymerase II transcription factor recruiting transcription factor activity [Evidence IPI] [PMID 9755175]; GO_process: GO:0016458 - gene silencing [Evidence IMP] [PMID 15016375]; GO_process: GO:1900460 - negative regulation of invasive growth in response to glucose limitation by negative regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 15466424]; GO_process: GO:1900460 - negative regulation of invasive growth in response to glucose limitation by negative regulation of transcription from RNA polymerase II promoter [Evidence IGI,IMP] [PMID 9811878]; GO_process: GO:1900462 - negative regulation of pseudohyphal growth by negative regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 12024012]; GO_process: GO:1900462 - negative regulation of pseudohyphal growth by negative regulation of transcription from RNA polymerase II promoter [Evidence IGI,IMP] [PMID 9811878]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 17594096]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA,IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Sfl1p 2175229 SFL1 30037744 SFL1 Sugiyamaella lignohabitans Sfl1p XP_018734909.1 2172845 R 796027 CDS AWJ20_686 30037745 complement(2192339..2193463) A 1 NC_031672.1 Cytochrome b2 (L-lactate cytochrome-c oxidoreductase); component of the mitochondrial intermembrane space, required for lactate utilization; expression is repressed by glucose and anaerobic conditions; GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IEA]; GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IDA] [PMID 3004948]; GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IDA] [PMID 6290489]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 11502169]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0070469 - respiratory chain [Evidence IEA]; GO_function: GO:0010181 - FMN binding [Evidence IEA]; GO_function: GO:0004460 - L-lactate dehydrogenase (cytochrome) activity [Evidence IEA]; GO_function: GO:0004460 - L-lactate dehydrogenase (cytochrome) activity [Evidence IDA] [PMID 3004948]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0020037 - heme binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_process: GO:0006089 - lactate metabolic process [Evidence IMP] [PMID 8492799]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; Cyb2p 2193463 CYB2 30037745 CYB2 Sugiyamaella lignohabitans Cyb2p XP_018734910.1 2192339 R 796027 CDS AWJ20_687 30037746 complement(2196663..2198492) A 1 NC_031672.1 Polyamine transporter of the major facilitator superfamily; member of the 12-spanner drug:H(+) antiporter DHA1 family; specific for spermine; localizes to the plasma membrane; TPO3 has a paralog, TPO2, that arose from the whole genome duplication; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IMP] [PMID 11171066]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 12562762]; GO_function: GO:0015297 - antiporter activity [Evidence IEA]; GO_function: GO:0000297 - spermine transmembrane transporter activity [Evidence IMP] [PMID 11171066]; GO_process: GO:0000296 - spermine transport [Evidence IMP] [PMID 11171066]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Tpo3p 2198492 TPO3 30037746 TPO3 Sugiyamaella lignohabitans Tpo3p XP_018734911.1 2196663 R 796027 CDS AWJ20_688 30037747 complement(2199598..2200644) A 1 NC_031672.1 Alpha subunit of succinyl-CoA ligase; succinyl-CoA ligase is a mitochondrial enzyme of the TCA cycle that catalyzes the nucleotide-dependent conversion of succinyl-CoA to succinate; phosphorylated; GO_component: GO:0042645 - mitochondrial nucleoid [Evidence IDA] [PMID 15692048]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 9874242]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0003878 - ATP citrate synthase activity [Evidence IEA]; GO_function: GO:0005525 - GTP binding [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0048037 - cofactor binding [Evidence IEA]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0004775 - succinate-CoA ligase (ADP-forming) activity [Evidence IEA,IEA]; GO_function: GO:0004775 - succinate-CoA ligase (ADP-forming) activity [Evidence IDA,IMP,ISS] [PMID 9874242]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0006104 - succinyl-CoA metabolic process [Evidence TAS] [PMID 9175438]; GO_process: GO:0006104 - succinyl-CoA metabolic process [Evidence IDA] [PMID 9874242]; GO_process: GO:0006099 - tricarboxylic acid cycle [Evidence IEA,IEA]; GO_process: GO:0006099 - tricarboxylic acid cycle [Evidence TAS] [PMID 9175438]; succinate--CoA ligase (GDP-forming) subunit alpha 2200644 LSC1 30037747 LSC1 Sugiyamaella lignohabitans succinate--CoA ligase (GDP-forming) subunit alpha XP_018734912.1 2199598 R 796027 CDS AWJ20_689 30037748 2203200..2205263 A 1 NC_031672.1 transcription factor TFIIIB subunit BRF1 2205263 BRF1 30037748 BRF1 Sugiyamaella lignohabitans transcription factor TFIIIB subunit BRF1 XP_018734913.1 2203200 D 796027 CDS AWJ20_690 30037750 complement(join(2204273..2204752,2206018..2207196)) A 1 NC_031672.1 uncharacterized protein 2207196 30037750 AWJ20_690 Sugiyamaella lignohabitans uncharacterized protein XP_018734914.1 2204273 R 796027 CDS AWJ20_691 30037751 join(2208192..2208464,2208883..2208957) A 1 NC_031672.1 AAA ATPase; subunit of polyubiquitin-selective segregase complex involved in ERAD, cell wall integrity during heat stress, mitotic spindle disassembly; subunit of complex involved in mitochondria-associated degradation; role in mobilizing membrane bound transcription factors by regulated ubiquitin/proteasome-dependent processing, in macroautophagy, PMN, RAD, ribophagy, homotypic ER membrane fusion, disassembly of Met30p from SCF complex, functional ortholog of human p97/VCP; GO_component: GO:0034098 - Cdc48p-Npl4p-Ufd1p AAA ATPase complex [Evidence IDA] [PMID 11598205]; GO_component: GO:0034098 - Cdc48p-Npl4p-Ufd1p AAA ATPase complex [Evidence IDA] [PMID 11733065]; GO_component: GO:0036266 - Cdc48p-Npl4p-Vms1p AAA ATPase complex [Evidence IDA] [PMID 21070972]; GO_component: GO:0000837 - Doa10p ubiquitin ligase complex [Evidence IDA] [PMID 16873066]; GO_component: GO:0000839 - Hrd1p ubiquitin ligase ERAD-L complex [Evidence IDA] [PMID 16873065]; GO_component: GO:0000839 - Hrd1p ubiquitin ligase ERAD-L complex [Evidence IDA] [PMID 16873066]; GO_component: GO:1990112 - RQC complex [Evidence IDA] [PMID 23178123]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 15910746]; GO_component: GO:0022625 - cytosolic large ribosomal subunit [Evidence IDA] [PMID 23479637]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA,IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IDA] [PMID 15910746]; GO_component: GO:0043231 - intracellular membrane-bounded organelle [Evidence IEA,IEA]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 19053807]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 21070972]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9436996]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016887 - ATPase activity [Evidence IDA] [PMID 7492595]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_function: GO:0008599 - protein phosphatase type 1 regulator activity [Evidence IMP] [PMID 23418575]; GO_function: GO:0043130 - ubiquitin binding [Evidence IDA] [PMID 11733065]; GO_process: GO:0071712 - ER-associated misfolded protein catabolic process [Evidence IMP] [PMID 11740563]; GO_process: GO:0071712 - ER-associated misfolded protein catabolic process [Evidence IMP] [PMID 11813000]; GO_process: GO:0030433 - ER-associated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 11739805]; GO_process: GO:0030433 - ER-associated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 11756557]; GO_process: GO:1990171 - SCF complex disassembly in response to cadmium stress [Evidence IMP] [PMID 23000173]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0071629 - cytoplasm-associated proteasomal ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 18812321]; GO_process: GO:0016320 - endoplasmic reticulum membrane fusion [Evidence IMP] [PMID 7553849]; GO_process: GO:0016236 - macroautophagy [Evidence IMP] [PMID 20855502]; GO_process: GO:0072671 - mitochondria-associated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 21070972]; GO_process: GO:0051228 - mitotic spindle disassembly [Evidence IMP] [PMID 14636562]; GO_process: GO:0070651 - nonfunctional rRNA decay [Evidence IMP] [PMID 22505030]; GO_process: GO:0071630 - nucleus-associated proteasomal ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 22718752]; GO_process: GO:0034727 - piecemeal microautophagy of nucleus [Evidence IMP] [PMID 20855502]; GO_process: GO:1900182 - positive regulation of protein localization to nucleus [Evidence IMP] [PMID 11598205]; GO_process: GO:1900182 - positive regulation of protein localization to nucleus [Evidence IMP] [PMID 11733065]; GO_process: GO:0043161 - proteasome-mediated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 20206597]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0030970 - retrograde protein transport, ER to cytosol [Evidence IMP] [PMID 11740563]; GO_process: GO:0034517 - ribophagy [Evidence IMP] [PMID 20508643]; GO_process: GO:1990116 - ribosome-associated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 23358411]; GO_process: GO:1990116 - ribosome-associated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 23479637]; GO_process: GO:0031134 - sister chromatid biorientation [Evidence IMP] [PMID 20483956]; GO_process: GO:0006810 - transport [Evidence IEA]; AAA family ATPase CDC48 2208957 CDC48 30037751 CDC48 Sugiyamaella lignohabitans AAA family ATPase CDC48 XP_018734915.1 2208192 D 796027 CDS AWJ20_692 30037752 2209079..2210863 A 1 NC_031672.1 AAA ATPase; subunit of polyubiquitin-selective segregase complex involved in ERAD, cell wall integrity during heat stress, mitotic spindle disassembly; subunit of complex involved in mitochondria-associated degradation; role in mobilizing membrane bound transcription factors by regulated ubiquitin/proteasome-dependent processing, in macroautophagy, PMN, RAD, ribophagy, homotypic ER membrane fusion, disassembly of Met30p from SCF complex, functional ortholog of human p97/VCP; GO_component: GO:0034098 - Cdc48p-Npl4p-Ufd1p AAA ATPase complex [Evidence IDA] [PMID 11598205]; GO_component: GO:0034098 - Cdc48p-Npl4p-Ufd1p AAA ATPase complex [Evidence IDA] [PMID 11733065]; GO_component: GO:0036266 - Cdc48p-Npl4p-Vms1p AAA ATPase complex [Evidence IDA] [PMID 21070972]; GO_component: GO:0000837 - Doa10p ubiquitin ligase complex [Evidence IDA] [PMID 16873066]; GO_component: GO:0000839 - Hrd1p ubiquitin ligase ERAD-L complex [Evidence IDA] [PMID 16873065]; GO_component: GO:0000839 - Hrd1p ubiquitin ligase ERAD-L complex [Evidence IDA] [PMID 16873066]; GO_component: GO:1990112 - RQC complex [Evidence IDA] [PMID 23178123]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 15910746]; GO_component: GO:0022625 - cytosolic large ribosomal subunit [Evidence IDA] [PMID 23479637]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA,IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IDA] [PMID 15910746]; GO_component: GO:0043231 - intracellular membrane-bounded organelle [Evidence IEA,IEA]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 19053807]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 21070972]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9436996]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016887 - ATPase activity [Evidence IDA] [PMID 7492595]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_function: GO:0008599 - protein phosphatase type 1 regulator activity [Evidence IMP] [PMID 23418575]; GO_function: GO:0043130 - ubiquitin binding [Evidence IDA] [PMID 11733065]; GO_process: GO:0071712 - ER-associated misfolded protein catabolic process [Evidence IMP] [PMID 11740563]; GO_process: GO:0071712 - ER-associated misfolded protein catabolic process [Evidence IMP] [PMID 11813000]; GO_process: GO:0030433 - ER-associated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 11739805]; GO_process: GO:0030433 - ER-associated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 11756557]; GO_process: GO:1990171 - SCF complex disassembly in response to cadmium stress [Evidence IMP] [PMID 23000173]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0071629 - cytoplasm-associated proteasomal ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 18812321]; GO_process: GO:0016320 - endoplasmic reticulum membrane fusion [Evidence IMP] [PMID 7553849]; GO_process: GO:0016236 - macroautophagy [Evidence IMP] [PMID 20855502]; GO_process: GO:0072671 - mitochondria-associated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 21070972]; GO_process: GO:0051228 - mitotic spindle disassembly [Evidence IMP] [PMID 14636562]; GO_process: GO:0070651 - nonfunctional rRNA decay [Evidence IMP] [PMID 22505030]; GO_process: GO:0071630 - nucleus-associated proteasomal ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 22718752]; GO_process: GO:0034727 - piecemeal microautophagy of nucleus [Evidence IMP] [PMID 20855502]; GO_process: GO:1900182 - positive regulation of protein localization to nucleus [Evidence IMP] [PMID 11598205]; GO_process: GO:1900182 - positive regulation of protein localization to nucleus [Evidence IMP] [PMID 11733065]; GO_process: GO:0043161 - proteasome-mediated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 20206597]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0030970 - retrograde protein transport, ER to cytosol [Evidence IMP] [PMID 11740563]; GO_process: GO:0034517 - ribophagy [Evidence IMP] [PMID 20508643]; GO_process: GO:1990116 - ribosome-associated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 23358411]; GO_process: GO:1990116 - ribosome-associated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 23479637]; GO_process: GO:0031134 - sister chromatid biorientation [Evidence IMP] [PMID 20483956]; GO_process: GO:0006810 - transport [Evidence IEA]; AAA family ATPase CDC48 2210863 CDC48 30037752 CDC48 Sugiyamaella lignohabitans AAA family ATPase CDC48 XP_018734916.1 2209079 D 796027 CDS AWJ20_693 30037753 complement(2212677..2214509) A 1 NC_031672.1 Phosphatidylinositol-4-phosphate 5-kinase; involved in actin cytoskeleton organization and cell morphogenesis; multicopy suppressor of stt4 mutation; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9624177]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 9624177]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IEA]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IDA] [PMID 9624177]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IDA] [PMID 9624178]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016307 - phosphatidylinositol phosphate kinase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0031321 - ascospore-type prospore assembly [Evidence IGI] [PMID 19502581]; GO_process: GO:0046488 - phosphatidylinositol metabolic process [Evidence IEA]; GO_process: GO:0046854 - phosphatidylinositol phosphorylation [Evidence IDA] [PMID 9624177]; GO_process: GO:0046854 - phosphatidylinositol phosphorylation [Evidence IDA] [PMID 9624178]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; 1-phosphatidylinositol-4-phosphate 5-kinase 2214509 MSS4 30037753 MSS4 Sugiyamaella lignohabitans 1-phosphatidylinositol-4-phosphate 5-kinase XP_018734917.1 2212677 R 796027 CDS AWJ20_694 30037754 complement(2216274..2218109) A 1 NC_031672.1 Subunit of the SF3a splicing factor complex; required for spliceosome assembly; acts after the formation of the U1 snRNP-pre-mRNA complex; GO_component: GO:0071004 - U2-type prespliceosome [Evidence IDA] [PMID 16618970]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005681 - spliceosomal complex [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IDA] [PMID 8065365]; GO_function: GO:0046872 - metal ion binding [Evidence IEA,IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0008380 - RNA splicing [Evidence IEA]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0000398 - mRNA splicing, via spliceosome [Evidence IDA] [PMID 8969185]; Prp9p 2218109 PRP9 30037754 PRP9 Sugiyamaella lignohabitans Prp9p XP_018734918.1 2216274 R 796027 CDS AWJ20_695 30037755 2223275..2225263 A 1 NC_031672.1 TFIIF (Transcription Factor II) largest subunit; involved in both transcription initiation and elongation of RNA polymerase II; homologous to human RAP74; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005674 - transcription factor TFIIF complex [Evidence IDA] [PMID 12242279]; GO_component: GO:0005674 - transcription factor TFIIF complex [Evidence IDA] [PMID 7995524]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0000991 - core RNA polymerase II binding transcription factor activity [Evidence IDA] [PMID 14749386]; GO_function: GO:0001139 - core RNA polymerase II recruiting transcription factor activity [Evidence IC] [PMID 7995524]; GO_function: GO:0072542 - protein phosphatase activator activity [Evidence IDA] [PMID 11904169]; GO_process: GO:0051123 - RNA polymerase II transcriptional preinitiation complex assembly [Evidence IC] [PMID 7995524]; GO_process: GO:0070940 - dephosphorylation of RNA polymerase II C-terminal domain [Evidence IGI] [PMID 11003641]; GO_process: GO:0070940 - dephosphorylation of RNA polymerase II C-terminal domain [Evidence IDA] [PMID 11904169]; GO_process: GO:0045893 - positive regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0001111 - promoter clearance from RNA polymerase II promoter [Evidence IC] [PMID 7995524]; GO_process: GO:0080163 - regulation of protein serine/threonine phosphatase activity [Evidence IDA] [PMID 11904169]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006368 - transcription elongation from RNA polymerase II promoter [Evidence IDA,IMP] [PMID 18362165]; GO_process: GO:0006367 - transcription initiation from RNA polymerase II promoter [Evidence IEA]; GO_process: GO:0006367 - transcription initiation from RNA polymerase II promoter [Evidence IDA] [PMID 1331084]; GO_process: GO:0006367 - transcription initiation from RNA polymerase II promoter [Evidence IDA,IMP] [PMID 18362165]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; GO_process: GO:0001174 - transcriptional start site selection at RNA polymerase II promoter [Evidence IGI,IMP] [PMID 15572698]; GO_process: GO:0001174 - transcriptional start site selection at RNA polymerase II promoter [Evidence IGI,IMP] [PMID 16081422]; GO_process: GO:0001174 - transcriptional start site selection at RNA polymerase II promoter [Evidence IGI] [PMID 16147988]; GO_process: GO:0001174 - transcriptional start site selection at RNA polymerase II promoter [Evidence IMP] [PMID 18362165]; GO_process: GO:0001174 - transcriptional start site selection at RNA polymerase II promoter [Evidence IGI] [PMID 7724527]; transcription factor IIF subunit TFG1 2225263 TFG1 30037755 TFG1 Sugiyamaella lignohabitans transcription factor IIF subunit TFG1 XP_018734919.1 2223275 D 796027 CDS AWJ20_698 30037758 2228732..2229091 A 1 NC_031672.1 Adenosine 5'-monophosphoramidase; interacts physically and genetically with Kin28p, a CDK and TFIIK subunit, and genetically with CAK1; member of the histidine triad (HIT) superfamily of nucleotide-binding proteins and similar to Hint; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IDA] [PMID 11805111]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence ISS] [PMID 9164465]; GO_process: GO:0009117 - nucleotide metabolic process [Evidence IDA] [PMID 11805111]; Hnt1p 2229091 HNT1 30037758 HNT1 Sugiyamaella lignohabitans Hnt1p XP_018734920.1 2228732 D 796027 CDS AWJ20_699 30037759 complement(2229313..2231907) A 1 NC_031672.1 Subunit of protein N-terminal acetyltransferase NatA; NatA is comprised of Nat1p, Ard1p, and Nat5p; N-terminally acetylates many proteins, which influences multiple processes such as the cell cycle, heat-shock resistance, mating, sporulation, and telomeric silencing; GO_component: GO:0031415 - NatA complex [Evidence IDA] [PMID 14517307]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0022626 - cytosolic ribosome [Evidence IDA] [PMID 14517307]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0004596 - peptide alpha-N-acetyltransferase activity [Evidence IDA,IMP] [PMID 2551674]; GO_process: GO:0006474 - N-terminal protein amino acid acetylation [Evidence IDA,IMP] [PMID 2551674]; Nat1p 2231907 NAT1 30037759 NAT1 Sugiyamaella lignohabitans Nat1p XP_018734921.1 2229313 R 796027 CDS AWJ20_700 30037762 complement(2237237..2238337) A 1 NC_031672.1 Bifunctional DRAP deaminase tRNA:pseudouridine synthase; the deaminase catalyzes the third step in riboflavin biosynthesis and the synthase catalyzes formation of pseudouridine at position 32 in cytoplasmic tRNAs; RIB2 has a paralog, PUS9, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence ISM] [PMID 15466869]; GO_function: GO:0043723 - 2,5-diamino-6-ribitylamino-4(3H)-pyrimidinone 5'-phosphate deaminase activity [Evidence IMP] [PMID 4555411]; GO_function: GO:0003723 - RNA binding [Evidence IEA,IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0008835 - diaminohydroxyphosphoribosylaminopyrimidine deaminase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA,IEA]; GO_function: GO:0016853 - isomerase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0009982 - pseudouridine synthase activity [Evidence IEA]; GO_function: GO:0009982 - pseudouridine synthase activity [Evidence IDA,IMP] [PMID 15466869]; GO_function: GO:0009982 - pseudouridine synthase activity [Evidence ISS] [PMID 8710514]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0009451 - RNA modification [Evidence IEA]; GO_process: GO:0001522 - pseudouridine synthesis [Evidence IEA]; GO_process: GO:0009231 - riboflavin biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0009231 - riboflavin biosynthetic process [Evidence IMP] [PMID 4555411]; GO_process: GO:0009231 - riboflavin biosynthetic process [Evidence IMP] [PMID 5366000]; GO_process: GO:0008033 - tRNA processing [Evidence IEA]; GO_process: GO:0031119 - tRNA pseudouridine synthesis [Evidence IDA,IMP] [PMID 15466869]; bifunctional DRAP deaminase/tRNA pseudouridine synthase RIB2 2238337 RIB2 30037762 RIB2 Sugiyamaella lignohabitans bifunctional DRAP deaminase/tRNA pseudouridine synthase RIB2 XP_018734922.1 2237237 R 796027 CDS AWJ20_701 30037763 complement(2238883..2239356) A 1 NC_031672.1 Mitochondrial tRNA:pseudouridine synthase; catalyzes the formation of pseudouridine at position 32 in mitochondrial tRNAs; contains an N-terminal mitochondrial targeting sequence; PUS9 has a paralog, RIB2, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IMP,ISM] [PMID 15466869]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003723 - RNA binding [Evidence IEA,IEA]; GO_function: GO:0016853 - isomerase activity [Evidence IEA]; GO_function: GO:0009982 - pseudouridine synthase activity [Evidence IEA]; GO_function: GO:0009982 - pseudouridine synthase activity [Evidence IDA,IMP] [PMID 15466869]; GO_process: GO:0009451 - RNA modification [Evidence IEA]; GO_process: GO:0001522 - pseudouridine synthesis [Evidence IEA]; GO_process: GO:0008033 - tRNA processing [Evidence IEA]; GO_process: GO:0031119 - tRNA pseudouridine synthesis [Evidence IDA,IMP] [PMID 15466869]; pseudouridine synthase PUS9 2239356 PUS9 30037763 PUS9 Sugiyamaella lignohabitans pseudouridine synthase PUS9 XP_018734923.1 2238883 R 796027 CDS AWJ20_702 30037764 2239989..2242130 A 1 NC_031672.1 Protein required for actin organization and passage through Start; highly conserved nuclear protein; required for actin cytoskeleton organization; plays a critical role in G1 events; binds Nap1p; involved in 60S ribosome biogenesis; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 10704371]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0030036 - actin cytoskeleton organization [Evidence IEA]; GO_process: GO:0030036 - actin cytoskeleton organization [Evidence IMP] [PMID 10704371]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0042273 - ribosomal large subunit biogenesis [Evidence IEA]; GO_process: GO:0042273 - ribosomal large subunit biogenesis [Evidence IMP] [PMID 15107621]; GO_process: GO:0000055 - ribosomal large subunit export from nucleus [Evidence IEA]; GO_process: GO:0000055 - ribosomal large subunit export from nucleus [Evidence IMP] [PMID 15107621]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0007089 - traversing start control point of mitotic cell cycle [Evidence IMP] [PMID 11160833]; Sda1p 2242130 SDA1 30037764 SDA1 Sugiyamaella lignohabitans Sda1p XP_018734924.1 2239989 D 796027 CDS AWJ20_703 30037765 2242616..2242927 A 1 NC_031672.1 uncharacterized protein 2242927 30037765 AWJ20_703 Sugiyamaella lignohabitans uncharacterized protein XP_018734925.1 2242616 D 796027 CDS AWJ20_704 30037766 complement(2243040..2244383) A 1 NC_031672.1 ATPase, putative RNA helicase of the DEAD-box family; component of 90S preribosome complex involved in production of 18S rRNA and assembly of 40S small ribosomal subunit; ATPase activity stimulated by association with Esf2p; GO_component: GO:0030686 - 90S preribosome [Evidence IDA] [PMID 12150911]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 11222764]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004004 - ATP-dependent RNA helicase activity [Evidence IMP] [PMID 11222764]; GO_function: GO:0008026 - ATP-dependent helicase activity [Evidence IEA]; GO_function: GO:0016887 - ATPase activity [Evidence IDA] [PMID 16772403]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0004386 - helicase activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0000480 - endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 11222764]; GO_process: GO:0000447 - endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 11222764]; GO_process: GO:0000472 - endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 11222764]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; ATP-dependent RNA helicase DBP8 2244383 DBP8 30037766 DBP8 Sugiyamaella lignohabitans ATP-dependent RNA helicase DBP8 XP_018734926.1 2243040 R 796027 CDS AWJ20_705 30037767 complement(2244740..2245285) A 1 NC_031672.1 Exosome non-catalytic core component; involved in 3'-5' RNA processing and degradation in both the nucleus and the cytoplasm; has similarity to E. coli RNase PH and to human hRrp41p (EXOSC4); GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0000177 - cytoplasmic exosome (RNase complex) [Evidence IDA] [PMID 10465791]; GO_component: GO:0000177 - cytoplasmic exosome (RNase complex) [Evidence IDA] [PMID 19046973]; GO_component: GO:0000178 - exosome (RNase complex) [Evidence IEA]; GO_component: GO:0000176 - nuclear exosome (RNase complex) [Evidence IDA] [PMID 10465791]; GO_component: GO:0000176 - nuclear exosome (RNase complex) [Evidence IDA] [PMID 19046973]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0034473 - U1 snRNA 3'-end processing [Evidence IGI,IMP] [PMID 10508172]; GO_process: GO:0034475 - U4 snRNA 3'-end processing [Evidence IGI,IMP] [PMID 10508172]; GO_process: GO:0034475 - U4 snRNA 3'-end processing [Evidence IMP] [PMID 10611222]; GO_process: GO:0034476 - U5 snRNA 3'-end processing [Evidence IGI,IMP] [PMID 10508172]; GO_process: GO:0000467 - exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 10508172]; GO_process: GO:0000467 - exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 9390555]; GO_process: GO:0070651 - nonfunctional rRNA decay [Evidence IC] [PMID 10465791]; GO_process: GO:0071028 - nuclear mRNA surveillance [Evidence IGI,IMP] [PMID 11030620]; GO_process: GO:0071039 - nuclear polyadenylation-dependent CUT catabolic process [Evidence IMP] [PMID 18591258]; GO_process: GO:0071042 - nuclear polyadenylation-dependent mRNA catabolic process [Evidence IC] [PMID 10465791]; GO_process: GO:0071038 - nuclear polyadenylation-dependent tRNA catabolic process [Evidence IDA] [PMID 15828860]; GO_process: GO:0071038 - nuclear polyadenylation-dependent tRNA catabolic process [Evidence IDA] [PMID 17643380]; GO_process: GO:0070478 - nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay [Evidence IGI] [PMID 12769863]; GO_process: GO:0070478 - nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay [Evidence IGI,IMP] [PMID 12881429]; GO_process: GO:0034427 - nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5' [Evidence IMP] [PMID 9482746]; GO_process: GO:0070481 - nuclear-transcribed mRNA catabolic process, non-stop decay [Evidence IC] [PMID 10465791]; GO_process: GO:0071051 - polyadenylation-dependent snoRNA 3'-end processing [Evidence IMP] [PMID 10611222]; GO_process: GO:0016075 - rRNA catabolic process [Evidence IMP] [PMID 10508172]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; Ski6p 2245285 SKI6 30037767 SKI6 Sugiyamaella lignohabitans Ski6p XP_018734927.1 2244740 R 796027 CDS AWJ20_706 30037768 2246114..2246680 A 1 NC_031672.1 hypothetical protein; associates with ribosomes and has a putative RNA binding domain; interacts with Tma20p; similar to human GRAP and human DRP1, which interacts with human Tma20p homolog MCT-1; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IDA] [PMID 16702403]; GO_function: GO:0003723 - RNA binding [Evidence ISS] [PMID 10093218]; GO_function: GO:0003743 - translation initiation factor activity [Evidence IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0006413 - translational initiation [Evidence IEA]; Tma22p 2246680 TMA22 30037768 TMA22 Sugiyamaella lignohabitans Tma22p XP_018734928.1 2246114 D 796027 CDS AWJ20_707 30037769 complement(2246923..2248038) A 1 NC_031672.1 Ornithine transporter of the mitochondrial inner membrane; exports ornithine from mitochondria as part of arginine biosynthesis; human ortholog is associated with hyperammonaemia-hyperornithinaemia-homocitrullinuria (HHH) syndrome; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005740 - mitochondrial envelope [Evidence IDA] [PMID 8798783]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_function: GO:0000064 - L-ornithine transmembrane transporter activity [Evidence IDA] [PMID 9237680]; GO_process: GO:0006526 - arginine biosynthetic process [Evidence IEA]; GO_process: GO:0006526 - arginine biosynthetic process [Evidence IMP] [PMID 8798783]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0000066 - mitochondrial ornithine transport [Evidence IDA] [PMID 9237680]; GO_process: GO:0006810 - transport [Evidence IEA]; Ort1p 2248038 ORT1 30037769 ORT1 Sugiyamaella lignohabitans Ort1p XP_018734929.1 2246923 R 796027 CDS AWJ20_708 30037770 complement(2248753..2249604) A 1 NC_031672.1 NADPH-dependent alpha-keto amide reductase; reduces aromatic alpha-keto amides, aliphatic alpha-keto esters, and aromatic alpha-keto esters; member of the aldo-keto reductase (AKR) family; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 16622836]; GO_function: GO:0004032 - alditol:NADP+ 1-oxidoreductase activity [Evidence IDA,ISS] [PMID 11306085]; GO_function: GO:0004033 - aldo-keto reductase (NADP) activity [Evidence IDA] [PMID 17140678]; GO_function: GO:0051268 - alpha-keto amide reductase activity [Evidence IDA] [PMID 15564669]; GO_function: GO:0051269 - alpha-keto ester reductase activity [Evidence IDA] [PMID 15564669]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_process: GO:0043603 - cellular amide metabolic process [Evidence IDA] [PMID 15564669]; GO_process: GO:0006725 - cellular aromatic compound metabolic process [Evidence IDA] [PMID 16268655]; GO_process: GO:0042180 - cellular ketone metabolic process [Evidence IDA] [PMID 17140678]; GO_process: GO:0034599 - cellular response to oxidative stress [Evidence IGI] [PMID 17919749]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; aldo-keto reductase superfamily protein 2249604 30037770 AWJ20_708 Sugiyamaella lignohabitans aldo-keto reductase superfamily protein XP_018734930.1 2248753 R 796027 CDS AWJ20_709 30037771 complement(2251710..2254736) A 1 NC_031672.1 ER membrane protein that plays a central role in ERAD; forms HRD complex with Hrd1p and ER-associated protein degradation (ERAD) determinants that engages in lumen to cytosol communication and coordination of ERAD events; GO_component: GO:0000839 - Hrd1p ubiquitin ligase ERAD-L complex [Evidence IDA] [PMID 16873066]; GO_component: GO:0000838 - Hrd1p ubiquitin ligase ERAD-M complex [Evidence IDA] [PMID 16873066]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IPI] [PMID 16619026]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0034099 - luminal surveillance complex [Evidence IDA] [PMID 16873065]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence IDA] [PMID 11390656]; GO_process: GO:0030433 - ER-associated ubiquitin-dependent protein catabolic process [Evidence IDA] [PMID 12105183]; GO_process: GO:0030970 - retrograde protein transport, ER to cytosol [Evidence IMP] [PMID 24292014]; ubiquitin ligase complex subunit HRD3 2254736 HRD3 30037771 HRD3 Sugiyamaella lignohabitans ubiquitin ligase complex subunit HRD3 XP_018734931.1 2251710 R 796027 CDS AWJ20_710 30037773 2255737..2256066 A 1 NC_031672.1 Subunit of tRNA-specific adenosine-34 deaminase; forms a heterodimer with Tad3p that converts adenosine to inosine at the wobble position of several tRNAs; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA,IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0008251 - tRNA-specific adenosine deaminase activity [Evidence IDA] [PMID 10550050]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0006400 - tRNA modification [Evidence IDA] [PMID 10550050]; GO_process: GO:0008033 - tRNA processing [Evidence IEA]; Tad2p 2256066 TAD2 30037773 TAD2 Sugiyamaella lignohabitans Tad2p XP_018734932.1 2255737 D 796027 CDS AWJ20_711 30037774 complement(2256298..2257755) A 1 NC_031672.1 Sorting nexin; involved in retrieval of late-Golgi SNAREs from post-Golgi endosomes to the trans-Golgi network and in cytoplasm to vacuole transport; contains a PX phosphoinositide-binding domain; forms complexes with Snx41p and with Atg20p; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 12048214]; GO_component: GO:0005769 - early endosome [Evidence IDA] [PMID 17420293]; GO_component: GO:0005768 - endosome [Evidence IEA]; GO_component: GO:0010008 - endosome membrane [Evidence IEA]; GO_component: GO:0019898 - extrinsic component of membrane [Evidence IDA] [PMID 12048214]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0000407 - pre-autophagosomal structure [Evidence IDA] [PMID 12048214]; GO_component: GO:0000407 - pre-autophagosomal structure [Evidence IDA] [PMID 18497569]; GO_function: GO:0008289 - lipid binding [Evidence IEA]; GO_function: GO:0035091 - phosphatidylinositol binding [Evidence IEA]; GO_function: GO:0032266 - phosphatidylinositol-3-phosphate binding [Evidence IDA] [PMID 11557775]; GO_function: GO:0032266 - phosphatidylinositol-3-phosphate binding [Evidence IDA] [PMID 12554655]; GO_process: GO:0032258 - CVT pathway [Evidence IMP] [PMID 12048214]; GO_process: GO:0032258 - CVT pathway [Evidence IMP] [PMID 12554655]; GO_process: GO:0034498 - early endosome to Golgi transport [Evidence IGI,IMP,IPI] [PMID 12554655]; GO_process: GO:0000422 - mitochondrion degradation [Evidence IMP] [PMID 19793921]; GO_process: GO:0034727 - piecemeal microautophagy of nucleus [Evidence IMP] [PMID 18701704]; GO_process: GO:0006623 - protein targeting to vacuole [Evidence IMP] [PMID 12554655]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Snx4p 2257755 SNX4 30037774 SNX4 Sugiyamaella lignohabitans Snx4p XP_018734933.1 2256298 R 796027 CDS AWJ20_712 30037775 complement(2258434..2259123) A 1 NC_031672.1 tRNAHis guanylyltransferase; adds a guanosine residue to the 5' end of tRNAH is after transcription and RNase P cleavage; can also catalyze reverse (3'-5') polymerization with certain substrates in a template-dependent reaction; couples nuclear division and migration to cell budding and cytokinesis; essential enzyme conserved among eukaryotes; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0005525 - GTP binding [Evidence IEA]; GO_function: GO:0000287 - magnesium ion binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016779 - nucleotidyltransferase activity [Evidence IEA]; GO_function: GO:0008193 - tRNA guanylyltransferase activity [Evidence IEA]; GO_function: GO:0008193 - tRNA guanylyltransferase activity [Evidence IDA] [PMID 14633974]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006400 - tRNA modification [Evidence IEA]; GO_process: GO:0006400 - tRNA modification [Evidence IDA] [PMID 14633974]; GO_process: GO:0008033 - tRNA processing [Evidence IEA]; Thg1p 2259123 THG1 30037775 THG1 Sugiyamaella lignohabitans Thg1p XP_018734934.1 2258434 R 796027 CDS AWJ20_713 30037776 2260393..2261964 A 1 NC_031672.1 Essential non-ATPase regulatory subunit of the 26S proteasome lid; similar to the p58 subunit of the human 26S proteasome; temperature-sensitive alleles cause metaphase arrest, suggesting a role for the proteasome in cell cycle control; GO_component: GO:0000502 - proteasome complex [Evidence IEA,IEA]; GO_component: GO:0008541 - proteasome regulatory particle, lid subcomplex [Evidence IDA] [PMID 9741626]; GO_function: GO:0030234 - enzyme regulator activity [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0050790 - regulation of catalytic activity [Evidence IEA]; GO_process: GO:0042176 - regulation of protein catabolic process [Evidence IEA]; GO_process: GO:0006511 - ubiquitin-dependent protein catabolic process [Evidence TAS] [PMID 8982460]; GO_process: GO:0006511 - ubiquitin-dependent protein catabolic process [Evidence TAS] [PMID 9697412]; proteasome regulatory particle lid subunit RPN3 2261964 RPN3 30037776 RPN3 Sugiyamaella lignohabitans proteasome regulatory particle lid subunit RPN3 XP_018734935.1 2260393 D 796027 CDS AWJ20_714 30037777 2262759..2265632 A 1 NC_031672.1 JmjC domain family histone demethylase; promotes global demethylation of H3K4 and repression of noncoding intergenic transcription during sporulation; removes methyl groups added by Set1p methyltransferase; negatively regulated by H3K14 acetylation; protein levels regulated by Not4p polyubiquitin-mediated degradation; regulates spore differentiation timing by extending period of active transcription in opposition to programmed global transcriptional quiescence; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0051213 - dioxygenase activity [Evidence IEA]; GO_function: GO:0032453 - histone demethylase activity (H3-K4 specific) [Evidence IDA,IMP] [PMID 17310254]; GO_function: GO:0032453 - histone demethylase activity (H3-K4 specific) [Evidence IMP] [PMID 17369256]; GO_function: GO:0034649 - histone demethylase activity (H3-monomethyl-K4 specific) [Evidence IMP] [PMID 19346402]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0016568 - chromatin modification [Evidence IEA]; GO_process: GO:0034720 - histone H3-K4 demethylation [Evidence IMP] [PMID 23123093]; GO_process: GO:0016577 - histone demethylation [Evidence IDA,IMP] [PMID 17310254]; GO_process: GO:0016577 - histone demethylation [Evidence IMP] [PMID 17369256]; GO_process: GO:0097549 - negative regulation of transcription by chromatin organization [Evidence IMP] [PMID 23123093]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; Jhd2p 2265632 JHD2 30037777 JHD2 Sugiyamaella lignohabitans Jhd2p XP_018734936.1 2262759 D 796027 CDS AWJ20_715 30037778 complement(2265852..2267807) A 1 NC_031672.1 Protein with MTHFR activity in vitro; null mutant has no phenotype and is prototrophic for methionine; MET13 encodes major isozyme of methylenetetrahydrofolate reductase (MTHFR); GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0004489 - methylenetetrahydrofolate reductase (NAD(P)H) activity [Evidence IEA,IEA]; GO_function: GO:0004489 - methylenetetrahydrofolate reductase (NAD(P)H) activity [Evidence IDA,ISS] [PMID 10600168]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0006555 - methionine metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0035999 - tetrahydrofolate interconversion [Evidence IEA]; methylenetetrahydrofolate reductase (NAD(P)H) MET12 2267807 MET12 30037778 MET12 Sugiyamaella lignohabitans methylenetetrahydrofolate reductase (NAD(P)H) MET12 XP_018734937.1 2265852 R 796027 CDS AWJ20_716 30037779 2268691..2269407 A 1 NC_031672.1 hypothetical protein; localized to the mitochondrial outer membrane; induced by treatment with 8-methoxypsoralen and UVA irradiation; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 14562095]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IEA,IEA]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IDA] [PMID 16407407]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; Fmp52p 2269407 FMP52 30037779 FMP52 Sugiyamaella lignohabitans Fmp52p XP_018734938.1 2268691 D 796027 CDS AWJ20_717 30037780 2270875..2271927 A 1 NC_031672.1 uncharacterized protein 2271927 30037780 AWJ20_717 Sugiyamaella lignohabitans uncharacterized protein XP_018734939.1 2270875 D 796027 CDS AWJ20_718 30037781 2277835..2279868 A 1 NC_031672.1 ATPase involved in protein import into the ER; also acts as a chaperone to mediate protein folding in the ER and may play a role in ER export of soluble proteins; regulates the unfolded protein response via interaction with Ire1p; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 2661018]; GO_component: GO:0005788 - endoplasmic reticulum lumen [Evidence IEA]; GO_component: GO:0034099 - luminal surveillance complex [Evidence IDA] [PMID 16873065]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0016887 - ATPase activity [Evidence IDA] [PMID 1325440]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0051082 - unfolded protein binding [Evidence IMP] [PMID 12808051]; GO_function: GO:0051082 - unfolded protein binding [Evidence IDA] [PMID 23704572]; GO_process: GO:0030433 - ER-associated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 11381090]; GO_process: GO:0006616 - SRP-dependent cotranslational protein targeting to membrane, translocation [Evidence IMP] [PMID 7568189]; GO_process: GO:0000742 - karyogamy involved in conjugation with cellular fusion [Evidence IGI,IMP] [PMID 10069807]; GO_process: GO:0031204 - posttranslational protein targeting to membrane, translocation [Evidence IDA] [PMID 10367885]; GO_process: GO:0031204 - posttranslational protein targeting to membrane, translocation [Evidence IMP] [PMID 7568189]; GO_process: GO:0006950 - response to stress [Evidence IEA]; GO_process: GO:0006986 - response to unfolded protein [Evidence IMP] [PMID 12808051]; Hsp70 family ATPase KAR2 2279868 KAR2 30037781 KAR2 Sugiyamaella lignohabitans Hsp70 family ATPase KAR2 XP_018734940.1 2277835 D 796027 CDS AWJ20_719 30037782 complement(2280573..2281067) A 1 NC_031672.1 Component of the spindle-assembly checkpoint complex; delays onset of anaphase in cells with defects in mitotic spindle assembly; forms a complex with Mad1p; regulates APC/C activity during prometaphase and metaphase of meiosis I; gene dosage imbalance between MAD1 and MAD2 leads to chromosome instability; GO_component: GO:0000778 - condensed nuclear chromosome kinetochore [Evidence IDA] [PMID 12473689]; GO_component: GO:0033597 - mitotic checkpoint complex [Evidence IPI] [PMID 10704439]; GO_component: GO:0033597 - mitotic checkpoint complex [Evidence IDA,IPI] [PMID 11726501]; GO_component: GO:0005643 - nuclear pore [Evidence IDA] [PMID 12473689]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0051312 - chromosome decondensation [Evidence IMP] [PMID 17151360]; GO_process: GO:0044774 - mitotic DNA integrity checkpoint [Evidence IGI] [PMID 16651657]; GO_process: GO:0007067 - mitotic nuclear division [Evidence IEA]; GO_process: GO:0007094 - mitotic spindle assembly checkpoint [Evidence IEA]; GO_process: GO:0007094 - mitotic spindle assembly checkpoint [Evidence IGI,IMP] [PMID 10704439]; GO_process: GO:0007094 - mitotic spindle assembly checkpoint [Evidence IPI] [PMID 9461437]; spindle checkpoint protein MAD2 2281067 MAD2 30037782 MAD2 Sugiyamaella lignohabitans spindle checkpoint protein MAD2 XP_018734941.1 2280573 R 796027 CDS AWJ20_720 30037784 complement(2283075..2284286) A 1 NC_031672.1 Translation initiation factor eIF5; functions both as a GTPase-activating protein to mediate hydrolysis of ribosome-bound GTP and as a GDP dissociation inhibitor to prevent recycling of eIF2; GO_component: GO:0022627 - cytosolic small ribosomal subunit [Evidence IPI] [PMID 9671501]; GO_component: GO:0033290 - eukaryotic 48S preinitiation complex [Evidence IDA] [PMID 17242201]; GO_component: GO:0043614 - multi-eIF complex [Evidence IDA] [PMID 11018020]; GO_component: GO:0043614 - multi-eIF complex [Evidence IDA] [PMID 15838098]; GO_function: GO:0005092 - GDP-dissociation inhibitor activity [Evidence IDA,IMP] [PMID 20485439]; GO_function: GO:0005525 - GTP binding [Evidence IEA]; GO_function: GO:0005096 - GTPase activator activity [Evidence ISS] [PMID 11092890]; GO_function: GO:0005096 - GTPase activator activity [Evidence IPI] [PMID 9395514]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0005515 - protein binding [Evidence IPI] [PMID 22683627]; GO_function: GO:0005515 - protein binding [Evidence IPI] [PMID 9395514]; GO_function: GO:0003743 - translation initiation factor activity [Evidence IEA,IEA]; GO_function: GO:0003743 - translation initiation factor activity [Evidence IDA] [PMID 12008673]; GO_function: GO:0003743 - translation initiation factor activity [Evidence ISS] [PMID 8486705]; GO_function: GO:0003743 - translation initiation factor activity [Evidence ISS] [PMID 9395514]; GO_function: GO:0031369 - translation initiation factor binding [Evidence IDA,IPI] [PMID 15145951]; GO_function: GO:0031369 - translation initiation factor binding [Evidence IDA] [PMID 22683627]; GO_function: GO:0031369 - translation initiation factor binding [Evidence IPI] [PMID 22851688]; GO_process: GO:0001732 - formation of translation initiation complex [Evidence IDA] [PMID 12008673]; GO_process: GO:0042256 - mature ribosome assembly [Evidence IMP] [PMID 11331597]; GO_process: GO:0045947 - negative regulation of translational initiation [Evidence IGI,IMP] [PMID 20485439]; GO_process: GO:0006446 - regulation of translational initiation [Evidence IMP,IPI] [PMID 11331597]; GO_process: GO:0006446 - regulation of translational initiation [Evidence IDA,IMP] [PMID 22851688]; GO_process: GO:0006412 - translation [Evidence IEA]; GO_process: GO:0006413 - translational initiation [Evidence IEA,IEA]; translation initiation factor eIF5 2284286 TIF5 30037784 TIF5 Sugiyamaella lignohabitans translation initiation factor eIF5 XP_018734942.1 2283075 R 796027 CDS AWJ20_721 30037785 2284009..2284299 A 1 NC_031672.1 uncharacterized protein 2284299 30037785 AWJ20_721 Sugiyamaella lignohabitans uncharacterized protein XP_018734943.1 2284009 D 796027 CDS AWJ20_722 30037786 2287616..2291797 A 1 NC_031672.1 DNA-binding E3 ubiquitin-protein ligase SNT2 2291797 SNT2 30037786 SNT2 Sugiyamaella lignohabitans DNA-binding E3 ubiquitin-protein ligase SNT2 XP_018734944.1 2287616 D 796027 CDS AWJ20_723 30037787 complement(2291910..2292602) A 1 NC_031672.1 Component of U2 snRNP complex; disruption causes reduced U2 snRNP levels; physically interacts with Msl1p; putative homolog of human U2A' snRNP protein; GO_component: GO:0005686 - U2 snRNP [Evidence IDA,IPI] [PMID 9799242]; GO_component: GO:0071004 - U2-type prespliceosome [Evidence IDA] [PMID 16618970]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005681 - spliceosomal complex [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008380 - RNA splicing [Evidence IEA]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0000398 - mRNA splicing, via spliceosome [Evidence IMP] [PMID 9799242]; Lea1p 2292602 LEA1 30037787 LEA1 Sugiyamaella lignohabitans Lea1p XP_018734945.1 2291910 R 796027 CDS AWJ20_724 30037788 2292930..2294531 A 1 NC_031672.1 Thiamine-phosphate diphosphorylase and hydroxyethylthiazole kinase; required for thiamine biosynthesis; GFP-fusion protein localizes to the cytoplasm in a punctate pattern; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 16850348]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA,IEA]; GO_function: GO:0004417 - hydroxyethylthiazole kinase activity [Evidence IEA,IEA]; GO_function: GO:0004417 - hydroxyethylthiazole kinase activity [Evidence IMP] [PMID 7982968]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0004789 - thiamine-phosphate diphosphorylase activity [Evidence IEA,IEA]; GO_function: GO:0004789 - thiamine-phosphate diphosphorylase activity [Evidence IMP] [PMID 7982968]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; GO_process: GO:0009228 - thiamine biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0009228 - thiamine biosynthetic process [Evidence IMP] [PMID 7982968]; GO_process: GO:0009229 - thiamine diphosphate biosynthetic process [Evidence IEA]; bifunctional hydroxyethylthiazole kinase/thiamine-phosphate diphosphorylase 2294531 THI6 30037788 THI6 Sugiyamaella lignohabitans bifunctional hydroxyethylthiazole kinase/thiamine-phosphate diphosphorylase XP_018734946.1 2292930 D 796027 CDS AWJ20_725 30037789 2295262..2298480 A 1 NC_031672.1 Serine protease and general molecular chaperone; involved in response to heat stress and promotion of apoptosis; may contribute to lipid homeostasis; sequence similarity to the mammalian Omi/HtrA2 family of serine proteases; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14657274]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_function: GO:0004252 - serine-type endopeptidase activity [Evidence IEA]; GO_function: GO:0008236 - serine-type peptidase activity [Evidence IEA]; GO_function: GO:0008236 - serine-type peptidase activity [Evidence ISS] [PMID 14534547]; GO_function: GO:0008236 - serine-type peptidase activity [Evidence IDA] [PMID 18946088]; GO_process: GO:0006915 - apoptotic process [Evidence IEA]; GO_process: GO:0006915 - apoptotic process [Evidence IMP,ISS] [PMID 14657274]; GO_process: GO:0006915 - apoptotic process [Evidence IMP,ISS] [PMID 16470384]; GO_process: GO:0006915 - apoptotic process [Evidence IMP] [PMID 16608876]; GO_process: GO:0044255 - cellular lipid metabolic process [Evidence IMP,IPI] [PMID 16470384]; GO_process: GO:0034605 - cellular response to heat [Evidence IMP] [PMID 18946088]; GO_process: GO:0030163 - protein catabolic process [Evidence IMP] [PMID 18946088]; GO_process: GO:0006508 - proteolysis [Evidence IEA,IEA]; Nma111p 2298480 NMA111 30037789 NMA111 Sugiyamaella lignohabitans Nma111p XP_018734947.1 2295262 D 796027 CDS AWJ20_726 30037790 2302024..2302512 A 1 NC_031672.1 Chromosome transmission fidelity protein 8 2302512 CTF8 30037790 CTF8 Sugiyamaella lignohabitans Chromosome transmission fidelity protein 8 XP_018734948.1 2302024 D 796027 CDS AWJ20_727 30037791 2306445..2307887 A 1 NC_031672.1 Covalently-bound cell wall hypothetical protein; identified as a cell cycle regulated SBF target gene; deletion mutants are highly resistant to treatment with beta-1,3-glucanase; has sequence similarity to YJL171C; GO_component: GO:0005576 - extracellular region [Evidence IEA,IEA]; GO_component: GO:0009277 - fungal-type cell wall [Evidence IDA] [PMID 11935221]; GO_component: GO:0009277 - fungal-type cell wall [Evidence IDA] [PMID 15781460]; GO_component: GO:0000324 - fungal-type vacuole [Evidence IDA] [PMID 14562095]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; Tos1p 2307887 TOS1 30037791 TOS1 Sugiyamaella lignohabitans Tos1p XP_018734949.1 2306445 D 796027 CDS AWJ20_728 30037792 complement(2307105..2307650) A 1 NC_031672.1 uncharacterized protein 2307650 30037792 AWJ20_728 Sugiyamaella lignohabitans uncharacterized protein XP_018734950.1 2307105 R 796027 CDS AWJ20_729 30037793 2311470..2313143 A 1 NC_031672.1 Phosphoenolpyruvate carboxykinase; key enzyme in gluconeogenesis, catalyzes early reaction in carbohydrate biosynthesis, glucose represses transcription and accelerates mRNA degradation, regulated by Mcm1p and Cat8p, located in the cytosol; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 196563]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016831 - carboxy-lyase activity [Evidence IEA]; GO_function: GO:0016829 - lyase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0004612 - phosphoenolpyruvate carboxykinase (ATP) activity [Evidence IEA,IEA]; GO_function: GO:0004612 - phosphoenolpyruvate carboxykinase (ATP) activity [Evidence IDA] [PMID 16330239]; GO_function: GO:0004612 - phosphoenolpyruvate carboxykinase (ATP) activity [Evidence IMP] [PMID 2689220]; GO_function: GO:0004611 - phosphoenolpyruvate carboxykinase activity [Evidence IEA]; GO_function: GO:0017076 - purine nucleotide binding [Evidence IEA]; GO_process: GO:0006094 - gluconeogenesis [Evidence IEA,IEA,IEA]; GO_process: GO:0006094 - gluconeogenesis [Evidence IEP] [PMID 2689220]; phosphoenolpyruvate carboxykinase PCK1 2313143 PCK1 30037793 PCK1 Sugiyamaella lignohabitans phosphoenolpyruvate carboxykinase PCK1 XP_018734951.1 2311470 D 796027 CDS AWJ20_730 30037795 join(2314990..2315012,2315303..2316458) A 1 NC_031672.1 Protein with a potential role in cell survival pathways; required for the diauxic growth shift; expression in mammalian cells increases survival under conditions inducing apoptosis; mutant has increased aneuploidy tolerance; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0034599 - cellular response to oxidative stress [Evidence IMP] [PMID 16034825]; GO_process: GO:0006979 - response to oxidative stress [Evidence IEA]; Svf1p 2316458 SVF1 30037795 SVF1 Sugiyamaella lignohabitans Svf1p XP_018734952.1 2314990 D 796027 CDS AWJ20_731 30037796 complement(2319051..2320910) A 1 NC_031672.1 uncharacterized protein 2320910 30037796 AWJ20_731 Sugiyamaella lignohabitans uncharacterized protein XP_018734953.1 2319051 R 796027 CDS AWJ20_732 30037797 2324744..2327986 A 1 NC_031672.1 uncharacterized protein 2327986 30037797 AWJ20_732 Sugiyamaella lignohabitans uncharacterized protein XP_018734954.1 2324744 D 796027 CDS AWJ20_733 30037798 complement(2325307..2325567) A 1 NC_031672.1 uncharacterized protein 2325567 30037798 AWJ20_733 Sugiyamaella lignohabitans uncharacterized protein XP_018734955.1 2325307 R 796027 CDS AWJ20_734 30037799 complement(2328276..2330279) A 1 NC_031672.1 U1 snRNP protein involved in splicing; required for U1 snRNP biogenesis; contains multiple tetriatricopeptide repeats; GO_component: GO:0005685 - U1 snRNP [Evidence IDA] [PMID 9630245]; GO_component: GO:0071004 - U2-type prespliceosome [Evidence IDA] [PMID 16618970]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005681 - spliceosomal complex [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IDA] [PMID 9418882]; GO_process: GO:0008380 - RNA splicing [Evidence IEA]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0000398 - mRNA splicing, via spliceosome [Evidence IMP] [PMID 9418882]; Prp42p 2330279 PRP42 30037799 PRP42 Sugiyamaella lignohabitans Prp42p XP_018734956.1 2328276 R 796027 CDS AWJ20_735 30037800 2331325..2332548 A 1 NC_031672.1 Porphobilinogen deaminase; catalyzes the conversion of 4-porphobilinogen to hydroxymethylbilane, the third step in heme biosynthesis; localizes to the cytoplasm and nucleus; expression is regulated by Hap2p-Hap3p, but not by levels of heme; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0004418 - hydroxymethylbilane synthase activity [Evidence IEA,IEA]; GO_function: GO:0004418 - hydroxymethylbilane synthase activity [Evidence IMP] [PMID 1508149]; GO_function: GO:0004418 - hydroxymethylbilane synthase activity [Evidence IMP] [PMID 323256]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006783 - heme biosynthetic process [Evidence IEA]; GO_process: GO:0006783 - heme biosynthetic process [Evidence IMP] [PMID 14559249]; GO_process: GO:0006783 - heme biosynthetic process [Evidence IMP] [PMID 323256]; GO_process: GO:0018160 - peptidyl-pyrromethane cofactor linkage [Evidence IEA]; GO_process: GO:0006779 - porphyrin-containing compound biosynthetic process [Evidence IEA]; GO_process: GO:0006782 - protoporphyrinogen IX biosynthetic process [Evidence IEA]; GO_process: GO:0033014 - tetrapyrrole biosynthetic process [Evidence IEA]; hydroxymethylbilane synthase 2332548 HEM3 30037800 HEM3 Sugiyamaella lignohabitans hydroxymethylbilane synthase XP_018734957.1 2331325 D 796027 CDS AWJ20_737 30037802 2336375..2336953 A 1 NC_031672.1 putative isochorismatase family protein yrdC 2336953 30037802 AWJ20_737 Sugiyamaella lignohabitans putative isochorismatase family protein yrdC XP_018734958.1 2336375 D 796027 CDS AWJ20_738 30037803 2341775..2342560 A 1 NC_031672.1 14-3-3 protein, minor isoform; controls proteome at post-transcriptional level, binds proteins and DNA, involved in regulation of many processes including exocytosis, vesicle transport, Ras/MAPK signaling, and rapamycin-sensitive signaling; protein increases in abundance and relative distribution to the nucleus increases upon DNA replication stress; BMH2 has a paralog, BMH1, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 12167636]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 16622836]; GO_function: GO:0003688 - DNA replication origin binding [Evidence IDA] [PMID 12167636]; GO_function: GO:0050815 - phosphoserine binding [Evidence IMP] [PMID 9822578]; GO_function: GO:0019904 - protein domain specific binding [Evidence IEA]; GO_process: GO:0000077 - DNA damage checkpoint [Evidence IMP] [PMID 14704161]; GO_process: GO:0006270 - DNA replication initiation [Evidence IGI] [PMID 19934224]; GO_process: GO:0007265 - Ras protein signal transduction [Evidence IGI] [PMID 9215628]; GO_process: GO:0030437 - ascospore formation [Evidence IGI] [PMID 9215628]; GO_process: GO:0034221 - fungal-type cell wall chitin biosynthetic process [Evidence IGI] [PMID 17559233]; GO_process: GO:0005977 - glycogen metabolic process [Evidence IGI] [PMID 9215628]; GO_process: GO:0043066 - negative regulation of apoptotic process [Evidence IMP] [PMID 22785534]; GO_process: GO:0051436 - negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle [Evidence IPI] [PMID 17030612]; GO_process: GO:0006267 - pre-replicative complex assembly involved in nuclear cell cycle DNA replication [Evidence IGI] [PMID 19934224]; GO_process: GO:0007124 - pseudohyphal growth [Evidence IGI] [PMID 9215628]; GO_process: GO:0001402 - signal transduction involved in filamentous growth [Evidence IGI] [PMID 9215628]; 14-3-3 family protein BMH2 2342560 BMH2 30037803 BMH2 Sugiyamaella lignohabitans 14-3-3 family protein BMH2 XP_018734959.1 2341775 D 796027 CDS AWJ20_739 30037804 2343269..2343760 A 1 NC_031672.1 uncharacterized protein 2343760 30037804 AWJ20_739 Sugiyamaella lignohabitans uncharacterized protein XP_018734960.1 2343269 D 796027 CDS AWJ20_740 30037806 complement(2344022..2344915) A 1 NC_031672.1 Delta 1-pyrroline-5-carboxylate reductase; catalyzes the last step in proline biosynthesis; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 7009582]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0004735 - pyrroline-5-carboxylate reductase activity [Evidence IEA,IEA]; GO_function: GO:0004735 - pyrroline-5-carboxylate reductase activity [Evidence ISS] [PMID 1508147]; GO_function: GO:0004735 - pyrroline-5-carboxylate reductase activity [Evidence IGI] [PMID 2824433]; GO_process: GO:0055129 - L-proline biosynthetic process [Evidence IEA]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0006561 - proline biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0006561 - proline biosynthetic process [Evidence IMP,ISS] [PMID 1508147]; GO_process: GO:0006561 - proline biosynthetic process [Evidence IMP] [PMID 2824433]; pyrroline-5-carboxylate reductase 2344915 PRO3 30037806 PRO3 Sugiyamaella lignohabitans pyrroline-5-carboxylate reductase XP_018734961.1 2344022 R 796027 CDS AWJ20_741 30037807 complement(2345680..2347497) A 1 NC_031672.1 Peroxisomal membrane signal receptor for peroxisomal matrix proteins; receptor for the C-terminal tripeptide signal sequence (PTS1) of peroxisomal matrix proteins; required for peroxisomal matrix protein import; also proposed to have PTS1-receptor independent functions; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 8858166]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005778 - peroxisomal membrane [Evidence IEA]; GO_component: GO:0005778 - peroxisomal membrane [Evidence IDA] [PMID 16849337]; GO_component: GO:0005778 - peroxisomal membrane [Evidence IPI] [PMID 8858166]; GO_component: GO:0005777 - peroxisome [Evidence IEA]; GO_component: GO:0005777 - peroxisome [Evidence IDA] [PMID 15632140]; GO_function: GO:0005052 - peroxisome matrix targeting signal-1 binding [Evidence IMP] [PMID 11154700]; GO_function: GO:0005052 - peroxisome matrix targeting signal-1 binding [Evidence IDA] [PMID 7980572]; GO_function: GO:0030674 - protein binding, bridging [Evidence IPI] [PMID 15798189]; GO_process: GO:0016560 - protein import into peroxisome matrix, docking [Evidence IPI] [PMID 12595255]; GO_process: GO:0016560 - protein import into peroxisome matrix, docking [Evidence IMP,IPI] [PMID 16849337]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Pex5p 2347497 PEX5 30037807 PEX5 Sugiyamaella lignohabitans Pex5p XP_018734962.1 2345680 R 796027 CDS AWJ20_742 30037808 complement(2348721..2349821) A 1 NC_031672.1 Subunit of the RNA polymerase II mediator complex; associates with core polymerase subunits to form the RNA polymerase II holoenzyme; required for basal RNA polymerase II transcription; homozygosity of the human MED17 L371P mutation is associated with infantile cerebral and cerebellar atrophy with poor myelination; GO_component: GO:0070847 - core mediator complex [Evidence IDA] [PMID 9891034]; GO_component: GO:0016592 - mediator complex [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0001104 - RNA polymerase II transcription cofactor activity [Evidence IEA]; GO_function: GO:0033613 - activating transcription factor binding [Evidence IDA] [PMID 9660972]; GO_function: GO:0001139 - core RNA polymerase II recruiting transcription factor activity [Evidence IMP] [PMID 19805365]; GO_function: GO:0001139 - core RNA polymerase II recruiting transcription factor activity [Evidence IPI] [PMID 21415355]; GO_function: GO:0005198 - structural molecule activity [Evidence IMP] [PMID 16962561]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IDA] [PMID 8187178]; GO_process: GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence IEA]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006367 - transcription initiation from RNA polymerase II promoter [Evidence IMP] [PMID 16263706]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Srb4p 2349821 SRB4 30037808 SRB4 Sugiyamaella lignohabitans Srb4p XP_018734963.1 2348721 R 796027 CDS AWJ20_743 30037809 2351022..2351729 A 1 NC_031672.1 Member of the NineTeen Complex (NTC); this complex contains Prp19p and stabilizes U6 snRNA in catalytic forms of the spliceosome containing U2, U5, and U6 snRNAs; binds directly to U6 snRNA; similar to S. pombe Cwf2; GO_component: GO:0000974 - Prp19 complex [Evidence IPI] [PMID 12088152]; GO_component: GO:0071006 - U2-type catalytic step 1 spliceosome [Evidence IDA] [PMID 19435883]; GO_component: GO:0071007 - U2-type catalytic step 2 spliceosome [Evidence IDA] [PMID 19435883]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005681 - spliceosomal complex [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0017070 - U6 snRNA binding [Evidence IDA] [PMID 19435883]; GO_function: GO:0000384 - first spliceosomal transesterification activity [Evidence IC] [PMID 19435883]; GO_function: GO:0046872 - metal ion binding [Evidence IEA,IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0036002 - pre-mRNA binding [Evidence IDA] [PMID 19435883]; GO_function: GO:0000386 - second spliceosomal transesterification activity [Evidence IC] [PMID 19435883]; GO_process: GO:0008380 - RNA splicing [Evidence IEA]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0045292 - mRNA cis splicing, via spliceosome [Evidence IMP] [PMID 19435883]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0000398 - mRNA splicing, via spliceosome [Evidence IMP] [PMID 12088152]; GO_process: GO:0000387 - spliceosomal snRNP assembly [Evidence IDA] [PMID 19435883]; Cwc2p 2351729 CWC2 30037809 CWC2 Sugiyamaella lignohabitans Cwc2p XP_018734964.1 2351022 D 796027 CDS AWJ20_744 30037810 2354854..2357517 A 1 NC_031672.1 Alpha arrestin; controls nutrient-mediated intracellular sorting of permease Gap1p; interacts with AP-1 subunit Apl4p; phosphorylated by Npr1p and also by cyclin-CDK complex Pcl7p-Pho85p; promotes endocytosis of plasma membrane proteins; ALY2 has a paralog, ALY1, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005769 - early endosome [Evidence IDA] [PMID 20739461]; GO_component: GO:0005770 - late endosome [Evidence IDA] [PMID 20739461]; GO_function: GO:0030674 - protein binding, bridging [Evidence IPI] [PMID 20956561]; GO_function: GO:0031625 - ubiquitin protein ligase binding [Evidence IPI] [PMID 18976803]; GO_process: GO:2000397 - positive regulation of ubiquitin-dependent endocytosis [Evidence IMP] [PMID 20956561]; GO_process: GO:0032386 - regulation of intracellular transport [Evidence IMP] [PMID 20739461]; GO_process: GO:0070086 - ubiquitin-dependent endocytosis [Evidence ISA] [PMID 18976803]; Aly2p 2357517 ALY2 30037810 ALY2 Sugiyamaella lignohabitans Aly2p XP_018734965.1 2354854 D 796027 CDS AWJ20_745 30037811 complement(2358042..2358770) A 1 NC_031672.1 uncharacterized protein 2358770 30037811 AWJ20_745 Sugiyamaella lignohabitans uncharacterized protein XP_018734966.1 2358042 R 796027 CDS AWJ20_746 30037812 2359034..2359780 A 1 NC_031672.1 splicing associated factor 2359780 saf1 30037812 saf1 Sugiyamaella lignohabitans splicing associated factor XP_018734967.1 2359034 D 796027 CDS AWJ20_747 30037813 complement(2359964..2362111) A 1 NC_031672.1 ribosome biogenesis protein Rix1 (predicted) 2362111 30037813 AWJ20_747 Sugiyamaella lignohabitans ribosome biogenesis protein Rix1 (predicted) XP_018734968.1 2359964 R 796027 CDS AWJ20_748 30037814 2366473..2367861 A 1 NC_031672.1 Allantoinase; converts allantoin to allantoate in the first step of allantoin degradation; expression sensitive to nitrogen catabolite repression; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0004038 - allantoinase activity [Evidence IEA,IEA]; GO_function: GO:0004038 - allantoinase activity [Evidence IMP] [PMID 1803816]; GO_function: GO:0004038 - allantoinase activity [Evidence IMP] [PMID 4604238]; GO_function: GO:0050897 - cobalt ion binding [Evidence IEA]; GO_function: GO:0016888 - endodeoxyribonuclease activity, producing 5'-phosphomonoesters [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA,IEA]; GO_function: GO:0016810 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds [Evidence IEA]; GO_function: GO:0016812 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0000737 - DNA catabolic process, endonucleolytic [Evidence IEA]; GO_process: GO:0009442 - allantoin assimilation pathway [Evidence IMP] [PMID 1803816]; GO_process: GO:0009442 - allantoin assimilation pathway [Evidence IMP] [PMID 4604238]; GO_process: GO:0000256 - allantoin catabolic process [Evidence IEA,IEA]; GO_process: GO:0006144 - purine nucleobase metabolic process [Evidence IEA]; allantoinase 2367861 DAL1 30037814 DAL1 Sugiyamaella lignohabitans allantoinase XP_018734969.1 2366473 D 796027 CDS AWJ20_749 30037815 complement(2366673..2366999) A 1 NC_031672.1 uncharacterized protein 2366999 30037815 AWJ20_749 Sugiyamaella lignohabitans uncharacterized protein XP_018734970.1 2366673 R 796027 CDS AWJ20_750 30037817 complement(2368217..2368882) A 1 NC_031672.1 Subunit b of the stator stalk of mitochondrial F1F0 ATP synthase; ATP synthase is a large, evolutionarily conserved enzyme complex required for ATP synthesis; contributes to the oligomerization of the complex, which in turn determines the shape of inner membrane cristae; phosphorylated; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0000276 - mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) [Evidence IBA,IEA]; GO_component: GO:0000274 - mitochondrial proton-transporting ATP synthase, stator stalk [Evidence IDA] [PMID 18722382]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0045263 - proton-transporting ATP synthase complex, coupling factor F(o) [Evidence IEA]; GO_function: GO:0015078 - hydrogen ion transmembrane transporter activity [Evidence IEA]; GO_function: GO:0046933 - proton-transporting ATP synthase activity, rotational mechanism [Evidence IDA] [PMID 20691145]; GO_function: GO:0046961 - proton-transporting ATPase activity, rotational mechanism [Evidence IMP] [PMID 8068646]; GO_process: GO:0015986 - ATP synthesis coupled proton transport [Evidence IEA]; GO_process: GO:0015986 - ATP synthesis coupled proton transport [Evidence IDA] [PMID 20691145]; GO_process: GO:0015986 - ATP synthesis coupled proton transport [Evidence IMP] [PMID 8068646]; GO_process: GO:0006811 - ion transport [Evidence IEA]; GO_process: GO:0035786 - protein complex oligomerization [Evidence IMP] [PMID 18293929]; GO_process: GO:0015992 - proton transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; F1F0 ATP synthase subunit 4 2368882 ATP4 30037817 ATP4 Sugiyamaella lignohabitans F1F0 ATP synthase subunit 4 XP_018734971.1 2368217 R 796027 CDS AWJ20_751 30037818 complement(2370425..2371387) A 1 NC_031672.1 Protein proposed to be involved in vacuolar functions; mutant shows defect in CPY processing and defects in vacuolar morphology; has similarity to oxidoreductases, found in lipid particles; required for replication of Brome mosaic virus in S. cerevisiae, a model system for studying replication of positive-strand RNA viruses in their natural hosts; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0005811 - lipid particle [Evidence IEA,IEA]; GO_component: GO:0005811 - lipid particle [Evidence IDA] [PMID 14562095]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence ISS] [PMID 8972580]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; GO_process: GO:0006624 - vacuolar protein processing [Evidence IMP] [PMID 21912603]; GO_process: GO:0007033 - vacuole organization [Evidence IMP] [PMID 21912603]; Env9p 2371387 ENV9 30037818 ENV9 Sugiyamaella lignohabitans Env9p XP_018734972.1 2370425 R 796027 CDS AWJ20_752 30037819 join(2372578..2374231,2376370..2376413,2376795..2376851) A 1 NC_031672.1 phosphatidylinositol-4-phosphate 5-kinase its3 2376851 30037819 AWJ20_752 Sugiyamaella lignohabitans phosphatidylinositol-4-phosphate 5-kinase its3 XP_018734973.1 2372578 D 796027 CDS AWJ20_753 30037820 2377133..2380531 A 1 NC_031672.1 Protein that functions in the cell wall integrity pathway; functions upstream of Pkc1p; GFP-fusion protein expression is induced in response to the DNA-damaging agent MMS; non-tagged Ack1p is detected in purified mitochondria; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0031505 - fungal-type cell wall organization [Evidence IMP] [PMID 18806213]; GO_process: GO:0009967 - positive regulation of signal transduction [Evidence IMP] [PMID 18806213]; Ack1p 2380531 ACK1 30037820 ACK1 Sugiyamaella lignohabitans Ack1p XP_018734974.1 2377133 D 796027 CDS AWJ20_754 30037821 2381613..2381870 A 1 NC_031672.1 Component of the TREX complex required for nuclear mRNA export; member of the DEAD-box RNA helicase superfamily and is involved in early and late steps of spliceosome assembly; homolog of the human splicing factor hUAP56; relocalizes from nucleus to cytoplasm upon DNA replication stress; GO_component: GO:0000781 - chromosome, telomeric region [Evidence IPI] [PMID 15942929]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11914276]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_component: GO:0005681 - spliceosomal complex [Evidence IEA]; GO_component: GO:0005681 - spliceosomal complex [Evidence TAS] [PMID 9476892]; GO_component: GO:0000346 - transcription export complex [Evidence IPI] [PMID 11979277]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004004 - ATP-dependent RNA helicase activity [Evidence IGI,ISA] [PMID 11156602]; GO_function: GO:0008026 - ATP-dependent helicase activity [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0004386 - helicase activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0008380 - RNA splicing [Evidence IEA]; GO_process: GO:0006348 - chromatin silencing at telomere [Evidence IMP] [PMID 15942929]; GO_process: GO:0031124 - mRNA 3'-end processing [Evidence IMP] [PMID 18614048]; GO_process: GO:0006406 - mRNA export from nucleus [Evidence IDA,IMP,IPI] [PMID 11675790]; GO_process: GO:0006406 - mRNA export from nucleus [Evidence IDA,IMP] [PMID 11696331]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0000398 - mRNA splicing, via spliceosome [Evidence IMP] [PMID 11156602]; GO_process: GO:0051028 - mRNA transport [Evidence IEA]; GO_process: GO:0006368 - transcription elongation from RNA polymerase II promoter [Evidence IMP] [PMID 17960421]; GO_process: GO:0006283 - transcription-coupled nucleotide-excision repair [Evidence IMP] [PMID 17537816]; GO_process: GO:0006810 - transport [Evidence IEA]; ATP-dependent RNA helicase SUB2 2381870 SUB2 30037821 SUB2 Sugiyamaella lignohabitans ATP-dependent RNA helicase SUB2 XP_018734975.1 2381613 D 796027 CDS AWJ20_755 30037822 2382998..2383756 A 1 NC_031672.1 Component of the TREX complex required for nuclear mRNA export; member of the DEAD-box RNA helicase superfamily and is involved in early and late steps of spliceosome assembly; homolog of the human splicing factor hUAP56; relocalizes from nucleus to cytoplasm upon DNA replication stress; GO_component: GO:0000781 - chromosome, telomeric region [Evidence IPI] [PMID 15942929]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11914276]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_component: GO:0005681 - spliceosomal complex [Evidence IEA]; GO_component: GO:0005681 - spliceosomal complex [Evidence TAS] [PMID 9476892]; GO_component: GO:0000346 - transcription export complex [Evidence IPI] [PMID 11979277]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004004 - ATP-dependent RNA helicase activity [Evidence IGI,ISA] [PMID 11156602]; GO_function: GO:0008026 - ATP-dependent helicase activity [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0004386 - helicase activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0008380 - RNA splicing [Evidence IEA]; GO_process: GO:0006348 - chromatin silencing at telomere [Evidence IMP] [PMID 15942929]; GO_process: GO:0031124 - mRNA 3'-end processing [Evidence IMP] [PMID 18614048]; GO_process: GO:0006406 - mRNA export from nucleus [Evidence IDA,IMP,IPI] [PMID 11675790]; GO_process: GO:0006406 - mRNA export from nucleus [Evidence IDA,IMP] [PMID 11696331]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0000398 - mRNA splicing, via spliceosome [Evidence IMP] [PMID 11156602]; GO_process: GO:0051028 - mRNA transport [Evidence IEA]; GO_process: GO:0006368 - transcription elongation from RNA polymerase II promoter [Evidence IMP] [PMID 17960421]; GO_process: GO:0006283 - transcription-coupled nucleotide-excision repair [Evidence IMP] [PMID 17537816]; GO_process: GO:0006810 - transport [Evidence IEA]; ATP-dependent RNA helicase SUB2 2383756 SUB2 30037822 SUB2 Sugiyamaella lignohabitans ATP-dependent RNA helicase SUB2 XP_018734976.1 2382998 D 796027 CDS AWJ20_756 30037823 complement(2383998..2386193) A 1 NC_031672.1 Transcriptional regulatory protein RXT3 2386193 30037823 AWJ20_756 Sugiyamaella lignohabitans Transcriptional regulatory protein RXT3 XP_018734977.1 2383998 R 796027 CDS AWJ20_757 30037824 2387954..2390185 A 1 NC_031672.1 Putative glycosidase; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm; YIR007W is a non-essential gene; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016798 - hydrolase activity, acting on glycosyl bonds [Evidence IEA]; GO_function: GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0005975 - carbohydrate metabolic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; hydrolase 2390185 30037824 AWJ20_757 Sugiyamaella lignohabitans hydrolase XP_018734978.1 2387954 D 796027 CDS AWJ20_758 30037825 complement(2390474..2391379) A 1 NC_031672.1 Subunit (145 kDa) of TFIID and SAGA complexes; involved in RNA polymerase II transcription initiation and in chromatin modification; GO_component: GO:0000124 - SAGA complex [Evidence IDA] [PMID 9674426]; GO_component: GO:0046695 - SLIK (SAGA-like) complex [Evidence IDA] [PMID 12446794]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005669 - transcription factor TFIID complex [Evidence IDA] [PMID 10788514]; GO_component: GO:0005669 - transcription factor TFIID complex [Evidence IDA] [PMID 15448131]; GO_function: GO:0001075 - RNA polymerase II core promoter sequence-specific DNA binding transcription factor activity involved in preinitiation complex assembly [Evidence IC]; GO_function: GO:0003682 - chromatin binding [Evidence IDA] [PMID 10817999]; GO_function: GO:0032947 - protein complex scaffold [Evidence IMP] [PMID 11940675]; GO_process: GO:0006352 - DNA-templated transcription, initiation [Evidence IEA]; GO_process: GO:0051123 - RNA polymerase II transcriptional preinitiation complex assembly [Evidence IMP] [PMID 12840001]; GO_process: GO:0016568 - chromatin modification [Evidence IDA] [PMID 9674426]; GO_process: GO:0016573 - histone acetylation [Evidence IDA] [PMID 9674426]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IDA] [PMID 12138208]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IDA] [PMID 15448131]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IMP] [PMID 8662725]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Taf10p 2391379 TAF10 30037825 TAF10 Sugiyamaella lignohabitans Taf10p XP_018734979.1 2390474 R 796027 CDS AWJ20_759 30037826 complement(2392792..2394714) A 1 NC_031672.1 uncharacterized protein 2394714 30037826 AWJ20_759 Sugiyamaella lignohabitans uncharacterized protein XP_018734980.1 2392792 R 796027 CDS AWJ20_760 30037828 2396421..2397857 A 1 NC_031672.1 Cytosolic and mitochondrial glutathione oxidoreductase; converts oxidized glutathione to reduced glutathione; cytosolic Glr1p is the main determinant of the glutathione redox state of the mitochondrial intermembrane space; mitochondrial Glr1p has a role in resistance to hyperoxia; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 23613772]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 23613772]; GO_function: GO:0050661 - NADP binding [Evidence IEA]; GO_function: GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO_function: GO:0004362 - glutathione-disulfide reductase activity [Evidence IEA,IEA]; GO_function: GO:0004362 - glutathione-disulfide reductase activity [Evidence IDA] [PMID 19049979]; GO_function: GO:0004362 - glutathione-disulfide reductase activity [Evidence IDA] [PMID 7737505]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0016668 - oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor [Evidence IEA]; GO_process: GO:0045454 - cell redox homeostasis [Evidence IEA]; GO_process: GO:0034599 - cellular response to oxidative stress [Evidence IMP] [PMID 8951820]; GO_process: GO:0006749 - glutathione metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0010731 - protein glutathionylation [Evidence IGI] [PMID 20074363]; glutathione-disulfide reductase GLR1 2397857 GLR1 30037828 GLR1 Sugiyamaella lignohabitans glutathione-disulfide reductase GLR1 XP_018734981.1 2396421 D 796027 CDS AWJ20_761 30037829 2398517..2399368 A 1 NC_031672.1 Component of U1 snRNP required for mRNA splicing via spliceosome; substrate of the arginine methyltransferase Hmt1p; may interact with poly(A) polymerase to regulate polyadenylation; homolog of human U1 70K protein; protein abundance increases in response to DNA replication stress; GO_component: GO:0005685 - U1 snRNP [Evidence IDA] [PMID 9630245]; GO_component: GO:0071004 - U2-type prespliceosome [Evidence IDA] [PMID 16618970]; GO_component: GO:0000243 - commitment complex [Evidence IPI] [PMID 10072386]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005681 - spliceosomal complex [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0030619 - U1 snRNA binding [Evidence IPI] [PMID 1387202]; GO_function: GO:0003729 - mRNA binding [Evidence IPI] [PMID 10072386]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0008380 - RNA splicing [Evidence IEA]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0000398 - mRNA splicing, via spliceosome [Evidence IPI] [PMID 10072386]; Snp1p 2399368 SNP1 30037829 SNP1 Sugiyamaella lignohabitans Snp1p XP_018734982.1 2398517 D 796027 CDS AWJ20_762 30037830 2401178..2402632 A 1 NC_031672.1 acid phosphatase PHO12 2402632 PHO12 30037830 PHO12 Sugiyamaella lignohabitans acid phosphatase PHO12 XP_018734983.1 2401178 D 796027 CDS AWJ20_763 30037831 2403863..2405371 A 1 NC_031672.1 acid phosphatase PHO3 2405371 PHO3 30037831 PHO3 Sugiyamaella lignohabitans acid phosphatase PHO3 XP_018734984.1 2403863 D 796027 CDS AWJ20_764 30037832 2405864..2406829 A 1 NC_031672.1 UPF0394 membrane protein 2406829 30037832 AWJ20_764 Sugiyamaella lignohabitans UPF0394 membrane protein XP_018734985.1 2405864 D 796027 CDS AWJ20_765 30037833 complement(2408943..2411612) A 1 NC_031672.1 3-hydroxyacyl-CoA dehydrogenase and enoyl-CoA hydratase; multifunctional enzyme of the peroxisomal fatty acid beta-oxidation pathway; GO_component: GO:0005777 - peroxisome [Evidence IEA,IEA]; GO_component: GO:0005777 - peroxisome [Evidence ISM] [PMID 1551874]; GO_function: GO:0003857 - 3-hydroxyacyl-CoA dehydrogenase activity [Evidence IDA] [PMID 1551874]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0004300 - enoyl-CoA hydratase activity [Evidence IDA] [PMID 1551874]; GO_function: GO:0016853 - isomerase activity [Evidence IEA]; GO_function: GO:0016829 - lyase activity [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor [Evidence IEA]; GO_process: GO:0006635 - fatty acid beta-oxidation [Evidence IEA]; GO_process: GO:0006635 - fatty acid beta-oxidation [Evidence IMP] [PMID 10497229]; GO_process: GO:0006635 - fatty acid beta-oxidation [Evidence IMP] [PMID 1551874]; GO_process: GO:0006631 - fatty acid metabolic process [Evidence IEA]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA,IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; bifunctional hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase FOX2 2411612 FOX2 30037833 FOX2 Sugiyamaella lignohabitans bifunctional hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase FOX2 XP_018734986.1 2408943 R 796027 CDS AWJ20_766 30037834 2413231..2414886 A 1 NC_031672.1 2-methylisocitrate lyase of the mitochondrial matrix; functions in the methylcitrate cycle to catalyze the conversion of 2-methylisocitrate to succinate and pyruvate; ICL2 transcription is repressed by glucose and induced by ethanol; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA]; GO_component: GO:0005759 - mitochondrial matrix [Evidence IDA] [PMID 11092862]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0004451 - isocitrate lyase activity [Evidence IEA]; GO_function: GO:0016829 - lyase activity [Evidence IEA]; GO_function: GO:0046421 - methylisocitrate lyase activity [Evidence IEA]; GO_function: GO:0046421 - methylisocitrate lyase activity [Evidence IDA] [PMID 11092862]; GO_process: GO:0019752 - carboxylic acid metabolic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0019629 - propionate catabolic process, 2-methylcitrate cycle [Evidence IDA] [PMID 11092862]; methylisocitrate lyase ICL2 2414886 ICL2 30037834 ICL2 Sugiyamaella lignohabitans methylisocitrate lyase ICL2 XP_018734987.1 2413231 D 796027 CDS AWJ20_767 30037835 2415311..2418043 A 1 NC_031672.1 Putative metalloendopeptidase; forms cytoplasmic foci upon DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0008237 - metallopeptidase activity [Evidence IEA,IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0006508 - proteolysis [Evidence IEA]; putative metalloendopeptidase 2418043 30037835 AWJ20_767 Sugiyamaella lignohabitans putative metalloendopeptidase XP_018734988.1 2415311 D 796027 CDS AWJ20_768 30037836 complement(2417642..2418382) A 1 NC_031672.1 Mitochondrial inner membrane protein required for complex IV assembly; associates with complex IV assembly intermediates and complex III/complex IV supercomplexes; similar to human SURF1 involved in Leigh Syndrome; complex IV is also known as cytochrome c oxidase; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IDA] [PMID 15306853]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IDA] [PMID 15306853]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IDA] [PMID 9162072]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0051082 - unfolded protein binding [Evidence IMP] [PMID 11389896]; GO_process: GO:0009060 - aerobic respiration [Evidence IMP] [PMID 9162072]; GO_process: GO:0033617 - mitochondrial respiratory chain complex IV assembly [Evidence IMP,IPI] [PMID 17882259]; Shy1p 2418382 SHY1 30037836 SHY1 Sugiyamaella lignohabitans Shy1p XP_018734989.1 2417642 R 796027 CDS AWJ20_769 30037837 complement(2419129..2421405) A 1 NC_031672.1 6-phosphofructo-2-kinase; inhibited by phosphoenolpyruvate and sn-glycerol 3-phosphate; has negligible fructose-2,6-bisphosphatase activity; transcriptional regulation involves protein kinase A; GO_component: GO:0005737 - cytoplasm [Evidence IC] [PMID 1657152]; GO_function: GO:0003873 - 6-phosphofructo-2-kinase activity [Evidence IEA,IEA]; GO_function: GO:0003873 - 6-phosphofructo-2-kinase activity [Evidence IDA] [PMID 1322693]; GO_function: GO:0003873 - 6-phosphofructo-2-kinase activity [Evidence IMP] [PMID 1657152]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0004331 - fructose-2,6-bisphosphate 2-phosphatase activity [Evidence IEA]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0046835 - carbohydrate phosphorylation [Evidence IEA,IEA]; GO_process: GO:0016311 - dephosphorylation [Evidence IEA]; GO_process: GO:0006003 - fructose 2,6-bisphosphate metabolic process [Evidence IEA]; GO_process: GO:0006003 - fructose 2,6-bisphosphate metabolic process [Evidence IMP] [PMID 1657152]; GO_process: GO:0006000 - fructose metabolic process [Evidence IEA]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; Pfk26p 2421405 PFK26 30037837 PFK26 Sugiyamaella lignohabitans Pfk26p XP_018734990.1 2419129 R 796027 CDS AWJ20_770 30037839 complement(2430298..2431905) A 1 NC_031672.1 uncharacterized protein 2431905 30037839 AWJ20_770 Sugiyamaella lignohabitans uncharacterized protein XP_018734991.1 2430298 R 796027 CDS AWJ20_771 30037840 2434301..2434804 A 1 NC_031672.1 similar to ribonuclease H; uncharacterized protein 2434804 30037840 AWJ20_771 Sugiyamaella lignohabitans uncharacterized protein XP_018734992.1 2434301 D 796027 CDS AWJ20_772 30037841 complement(2437414..2441073) A 1 NC_031672.1 Putative helicase with limited sequence similarity to human Rb protein; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies; YLR419W is not an essential gene; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0008026 - ATP-dependent helicase activity [Evidence IEA]; GO_function: GO:0004386 - helicase activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0008152 - metabolic process [Evidence IEA,IEA]; putative helicase 2441073 30037841 AWJ20_772 Sugiyamaella lignohabitans putative helicase XP_018734993.1 2437414 R 796027 CDS AWJ20_773 30037842 complement(2441313..2441585) A 1 NC_031672.1 Putative helicase with limited sequence similarity to human Rb protein; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies; YLR419W is not an essential gene; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0008026 - ATP-dependent helicase activity [Evidence IEA]; GO_function: GO:0004386 - helicase activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0008152 - metabolic process [Evidence IEA,IEA]; putative helicase 2441585 30037842 AWJ20_773 Sugiyamaella lignohabitans putative helicase XP_018734994.1 2441313 R 796027 CDS AWJ20_774 30037843 2447405..2448943 A 1 NC_031672.1 uncharacterized protein 2448943 30037843 AWJ20_774 Sugiyamaella lignohabitans uncharacterized protein XP_018734995.1 2447405 D 796027 CDS AWJ20_775 30037844 2454484..2455848 A 1 NC_031672.1 High affinity nicotinic acid plasma membrane permease; responsible for uptake of low levels of nicotinic acid; expression of the gene increases in the absence of extracellular nicotinic acid or para-aminobenzoate (PABA); GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0005887 - integral component of plasma membrane [Evidence ISS] [PMID 9678606]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0015663 - nicotinamide mononucleotide transmembrane transporter activity [Evidence IMP] [PMID 10869563]; GO_process: GO:0015890 - nicotinamide mononucleotide transport [Evidence IEP,IMP] [PMID 10869563]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Tna1p 2455848 TNA1 30037844 TNA1 Sugiyamaella lignohabitans Tna1p XP_018734996.1 2454484 D 796027 CDS AWJ20_776 30037845 2456284..2458365 A 1 NC_031672.1 Pseudouridine synthase; catalyzes pseudouridylation at positions 35 and 56 in U2 snRNA, position 50 in 5S rRNA, position 13 in cytoplasmic tRNAs, and position 35 in pre-tRNA(Tyr); conserved in archaea, vertebrates, and some bacteria; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0016853 - isomerase activity [Evidence IEA]; GO_function: GO:0009982 - pseudouridine synthase activity [Evidence IEA]; GO_function: GO:0009982 - pseudouridine synthase activity [Evidence IDA,IMP] [PMID 12682021]; GO_function: GO:0009982 - pseudouridine synthase activity [Evidence IMP] [PMID 18332121]; GO_process: GO:0009451 - RNA modification [Evidence IEA]; GO_process: GO:0008380 - RNA splicing [Evidence IEA]; GO_process: GO:0000455 - enzyme-directed rRNA pseudouridine synthesis [Evidence IMP] [PMID 18332121]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0001522 - pseudouridine synthesis [Evidence IEA]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; GO_process: GO:0031120 - snRNA pseudouridine synthesis [Evidence IDA,IMP] [PMID 12682021]; GO_process: GO:0031120 - snRNA pseudouridine synthesis [Evidence IMP] [PMID 14561887]; GO_process: GO:0008033 - tRNA processing [Evidence IEA]; GO_process: GO:0031119 - tRNA pseudouridine synthesis [Evidence IMP] [PMID 14561887]; pseudouridine synthase PUS7 2458365 PUS7 30037845 PUS7 Sugiyamaella lignohabitans pseudouridine synthase PUS7 XP_018734997.1 2456284 D 796027 CDS AWJ20_777 30037846 complement(2458591..2459745) A 1 NC_031672.1 Protein with a role in UDP-galactose transport to the Golgi lumen; has similarity to human UDP-galactose transporter UGTrel1, exhibits a genetic interaction with S. cerevisiae ERO1; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0005459 - UDP-galactose transmembrane transporter activity [Evidence ISS] [PMID 11284010]; GO_process: GO:0015785 - UDP-galactose transport [Evidence IMP] [PMID 11284009]; GO_process: GO:0015786 - UDP-glucose transport [Evidence IGI,IMP] [PMID 18693752]; GO_process: GO:0008643 - carbohydrate transport [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Hut1p 2459745 HUT1 30037846 HUT1 Sugiyamaella lignohabitans Hut1p XP_018734998.1 2458591 R 796027 CDS AWJ20_778 30037847 2460477..2461067 A 1 NC_031672.1 Beta 4 subunit of the 20S proteasome; localizes to the nucleus throughout the cell cycle; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IDA] [PMID 15973433]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 10419517]; GO_component: GO:0000502 - proteasome complex [Evidence IEA]; GO_component: GO:0005839 - proteasome core complex [Evidence IEA]; GO_component: GO:0019774 - proteasome core complex, beta-subunit complex [Evidence IDA] [PMID 9087403]; GO_component: GO:0034515 - proteasome storage granule [Evidence IC] [PMID 9087403]; GO_function: GO:0061133 - endopeptidase activator activity [Evidence IMP] [PMID 8808631]; GO_function: GO:0004175 - endopeptidase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_function: GO:0004298 - threonine-type endopeptidase activity [Evidence IEA,IEA]; GO_process: GO:0010499 - proteasomal ubiquitin-independent protein catabolic process [Evidence IDA] [PMID 19162040]; GO_process: GO:0043161 - proteasome-mediated ubiquitin-dependent protein catabolic process [Evidence IDA] [PMID 11545745]; GO_process: GO:0043161 - proteasome-mediated ubiquitin-dependent protein catabolic process [Evidence IDA] [PMID 19029916]; GO_process: GO:0006508 - proteolysis [Evidence IEA]; GO_process: GO:0051603 - proteolysis involved in cellular protein catabolic process [Evidence IEA]; proteasome core particle subunit beta 4 2461067 PRE1 30037847 PRE1 Sugiyamaella lignohabitans proteasome core particle subunit beta 4 XP_018734999.1 2460477 D 796027 CDS AWJ20_779 30037848 2466396..2468240 A 1 NC_031672.1 Phosphatidylinositol-4-phosphate 5-kinase; involved in actin cytoskeleton organization and cell morphogenesis; multicopy suppressor of stt4 mutation; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9624177]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 9624177]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IEA]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IDA] [PMID 9624177]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IDA] [PMID 9624178]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016307 - phosphatidylinositol phosphate kinase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0031321 - ascospore-type prospore assembly [Evidence IGI] [PMID 19502581]; GO_process: GO:0046488 - phosphatidylinositol metabolic process [Evidence IEA]; GO_process: GO:0046854 - phosphatidylinositol phosphorylation [Evidence IDA] [PMID 9624177]; GO_process: GO:0046854 - phosphatidylinositol phosphorylation [Evidence IDA] [PMID 9624178]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; 1-phosphatidylinositol-4-phosphate 5-kinase 2468240 MSS4 30037848 MSS4 Sugiyamaella lignohabitans 1-phosphatidylinositol-4-phosphate 5-kinase XP_018735000.1 2466396 D 796027 CDS AWJ20_780 30037850 2469875..2473660 A 1 NC_031672.1 DEAH-box RNA-dependent ATPase/ATP-dependent RNA helicase; associates with lariat intermediates before the second catalytic step of splicing; mediates ATP-dependent mRNA release from the spliceosome and unwinds RNA duplexes; required for proofreading the exon ligation reaction; GO_component: GO:0071007 - U2-type catalytic step 2 spliceosome [Evidence IMP] [PMID 9524130]; GO_component: GO:0071021 - U2-type post-spliceosomal complex [Evidence IMP] [PMID 12212850]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004004 - ATP-dependent RNA helicase activity [Evidence IDA] [PMID 9582286]; GO_function: GO:0008026 - ATP-dependent helicase activity [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0004386 - helicase activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0000386 - second spliceosomal transesterification activity [Evidence IDA] [PMID 12212850]; GO_function: GO:0000386 - second spliceosomal transesterification activity [Evidence IMP] [PMID 9524130]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0008380 - RNA splicing [Evidence IEA]; GO_process: GO:0000350 - generation of catalytic spliceosome for second transesterification step [Evidence IDA] [PMID 12212850]; GO_process: GO:0000350 - generation of catalytic spliceosome for second transesterification step [Evidence IMP] [PMID 22408182]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0000390 - spliceosomal complex disassembly [Evidence IMP] [PMID 9524130]; DEAH-box ATP-dependent RNA helicase PRP22 2473660 PRP22 30037850 PRP22 Sugiyamaella lignohabitans DEAH-box ATP-dependent RNA helicase PRP22 XP_018735001.1 2469875 D 796027 CDS AWJ20_781 30037851 complement(2473989..2474708) A 1 NC_031672.1 Triose phosphate isomerase, abundant glycolytic enzyme; mRNA half-life is regulated by iron availability; transcription is controlled by activators Reb1p, Gcr1p, and Rap1p through binding sites in the 5' non-coding region; inhibition of Tpi1p activity by PEP (phosphoenolpyruvate) stimulates redox metabolism in respiring cells; E104D mutation in human TPI causes a rare autosomal disease; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16962558]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 16622836]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016853 - isomerase activity [Evidence IEA]; GO_function: GO:0004807 - triose-phosphate isomerase activity [Evidence IEA,IEA]; GO_function: GO:0004807 - triose-phosphate isomerase activity [Evidence IDA] [PMID 236471]; GO_process: GO:0006094 - gluconeogenesis [Evidence IEA,IEA]; GO_process: GO:0006096 - glycolytic process [Evidence IEA,IEA,IEA]; GO_process: GO:0006096 - glycolytic process [Evidence IMP] [PMID 11329176]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0006098 - pentose-phosphate shunt [Evidence IEA]; triose-phosphate isomerase TPI1 2474708 TPI1 30037851 TPI1 Sugiyamaella lignohabitans triose-phosphate isomerase TPI1 XP_018735002.1 2473989 R 796027 CDS AWJ20_782 30037852 2475750..2476607 A 1 NC_031672.1 Essential subunit of the Dam1 complex (aka DASH complex); cooperates with Duo1p to connect the DASH complex with the microtubules (MT); couples kinetochores to the force produced by MT depolymerization thereby aiding in chromosome segregation; Ipl1p target for regulating kinetochore-MT attachments; GO_component: GO:0042729 - DASH complex [Evidence IEA]; GO_component: GO:0042729 - DASH complex [Evidence IDA] [PMID 15640796]; GO_component: GO:0042729 - DASH complex [Evidence IDA] [PMID 15664196]; GO_component: GO:0005694 - chromosome [Evidence IEA]; GO_component: GO:0000775 - chromosome, centromeric region [Evidence IEA]; GO_component: GO:0000777 - condensed chromosome kinetochore [Evidence IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA]; GO_component: GO:0000776 - kinetochore [Evidence IEA]; GO_component: GO:0005874 - microtubule [Evidence IEA]; GO_component: GO:0072686 - mitotic spindle [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005819 - spindle [Evidence IEA]; GO_function: GO:0008017 - microtubule binding [Evidence IDA] [PMID 15664196]; GO_function: GO:0008017 - microtubule binding [Evidence IDA] [PMID 16777964]; GO_function: GO:0051010 - microtubule plus-end binding [Evidence IDA] [PMID 17620411]; GO_function: GO:0051010 - microtubule plus-end binding [Evidence IDA] [PMID 20479465]; GO_process: GO:0008608 - attachment of spindle microtubules to kinetochore [Evidence IEA]; GO_process: GO:0008608 - attachment of spindle microtubules to kinetochore [Evidence IDA] [PMID 17620411]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0007059 - chromosome segregation [Evidence IEA]; GO_process: GO:0007067 - mitotic nuclear division [Evidence IEA]; GO_process: GO:0051987 - positive regulation of attachment of spindle microtubules to kinetochore [Evidence IDA] [PMID 20479465]; GO_process: GO:0051987 - positive regulation of attachment of spindle microtubules to kinetochore [Evidence IDA] [PMID 20479468]; GO_process: GO:0031116 - positive regulation of microtubule polymerization [Evidence IDA] [PMID 15664196]; Dam1p 2476607 DAM1 30037852 DAM1 Sugiyamaella lignohabitans Dam1p XP_018735003.1 2475750 D 796027 CDS AWJ20_783 30037853 complement(2476726..2477799) A 1 NC_031672.1 AdoMet-dependent methyltransferase; involved in a novel 3-methylhistidine modification of ribosomal protein Rpl3p; seven beta-strand MTase family member; null mutant exhibits a weak vacuolar protein sorting defect and caspofungin resistance; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity [Evidence ISS] [PMID 12872006]; GO_function: GO:0008168 - methyltransferase activity [Evidence IEA]; GO_function: GO:0018064 - protein-histidine N-methyltransferase activity [Evidence IEA]; GO_function: GO:0018064 - protein-histidine N-methyltransferase activity [Evidence IMP] [PMID 20864530]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0032259 - methylation [Evidence IEA]; GO_process: GO:0042038 - peptidyl-histidine methylation, to form tele-methylhistidine [Evidence IMP] [PMID 20864530]; Hpm1p 2477799 HPM1 30037853 HPM1 Sugiyamaella lignohabitans Hpm1p XP_018735004.1 2476726 R 796027 CDS AWJ20_784 30037854 2478051..2479199 A 1 NC_031672.1 Component of the conserved oligomeric Golgi complex; a cytosolic tethering complex (Cog1p through Cog8p) that functions in protein trafficking to mediate fusion of transport vesicles to Golgi compartments; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA]; GO_component: GO:0017119 - Golgi transport complex [Evidence IEA]; GO_component: GO:0017119 - Golgi transport complex [Evidence IPI] [PMID 11703943]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0032258 - CVT pathway [Evidence IMP] [PMID 20065092]; GO_process: GO:0006891 - intra-Golgi vesicle-mediated transport [Evidence IEA]; GO_process: GO:0006891 - intra-Golgi vesicle-mediated transport [Evidence IGI,IPI] [PMID 11703943]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Cog5p 2479199 COG5 30037854 COG5 Sugiyamaella lignohabitans Cog5p XP_018735005.1 2478051 D 796027 CDS AWJ20_785 30037855 2479628..2480464 A 1 NC_031672.1 Uncharacterized protein YNL050C 2480464 30037855 AWJ20_785 Sugiyamaella lignohabitans Uncharacterized protein YNL050C XP_018735006.1 2479628 D 796027 CDS AWJ20_786 30037856 complement(2480737..2482170) A 1 NC_031672.1 Protein with similarity to mammalian monocarboxylate permeases; monocarboxylate permeases are involved in transport of monocarboxylic acids across the plasma membrane but mutant is not deficient in monocarboxylate transport; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 11536335]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_function: GO:0008028 - monocarboxylic acid transmembrane transporter activity [Evidence IGI,IMP] [PMID 11536335]; GO_function: GO:0015293 - symporter activity [Evidence IEA]; GO_function: GO:0005215 - transporter activity [Evidence ISS] [PMID 11536335]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence ISS] [PMID 11536335]; Mch4p 2482170 MCH4 30037856 MCH4 Sugiyamaella lignohabitans Mch4p XP_018735007.1 2480737 R 796027 CDS AWJ20_787 30037857 2484100..2485710 A 1 NC_031672.1 uncharacterized protein 2485710 30037857 AWJ20_787 Sugiyamaella lignohabitans uncharacterized protein XP_018735008.1 2484100 D 796027 CDS AWJ20_788 30037858 2486509..2488134 A 1 NC_031672.1 Polyamine transporter of the major facilitator superfamily; member of the 12-spanner drug:H(+) antiporter DHA1 family; recognizes spermine, putrescine, and spermidine; catalyzes uptake of polyamines at alkaline pH and excretion at acidic pH; during oxidative stress exports spermine, spermidine from the cell, which controls timing of expression of stress-responsive genes; phosphorylation enhances activity and sorting to the plasma membrane; GO_component: GO:0033101 - cellular bud membrane [Evidence IDA] [PMID 13679573]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IMP] [PMID 11171066]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 12562762]; GO_component: GO:0005886 - plasma membrane [Evidence IDA,IMP] [PMID 15637075]; GO_function: GO:0015297 - antiporter activity [Evidence IEA]; GO_function: GO:0015606 - spermidine transmembrane transporter activity [Evidence IMP] [PMID 11171066]; GO_function: GO:0015606 - spermidine transmembrane transporter activity [Evidence IDA,IMP] [PMID 15637075]; GO_function: GO:0000297 - spermine transmembrane transporter activity [Evidence IMP] [PMID 11171066]; GO_function: GO:0000297 - spermine transmembrane transporter activity [Evidence IDA,IMP] [PMID 15637075]; GO_function: GO:0000297 - spermine transmembrane transporter activity [Evidence IMP] [PMID 9920864]; GO_process: GO:1902047 - polyamine transmembrane transport [Evidence IMP] [PMID 24136413]; GO_process: GO:0015847 - putrescine transport [Evidence IMP] [PMID 9920864]; GO_process: GO:0015848 - spermidine transport [Evidence IMP] [PMID 11171066]; GO_process: GO:0015848 - spermidine transport [Evidence IDA,IMP] [PMID 15637075]; GO_process: GO:0015848 - spermidine transport [Evidence IMP] [PMID 9920864]; GO_process: GO:0000296 - spermine transport [Evidence IMP] [PMID 11171066]; GO_process: GO:0000296 - spermine transport [Evidence IDA,IMP] [PMID 15637075]; GO_process: GO:0000296 - spermine transport [Evidence IMP] [PMID 9920864]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Tpo1p 2488134 TPO1 30037858 TPO1 Sugiyamaella lignohabitans Tpo1p XP_018735009.1 2486509 D 796027 CDS AWJ20_789 30037859 2488772..2489710 A 1 NC_031672.1 Subunit of the ARP2/3 complex; ARP2/3 is required for the motility and integrity of cortical actin patches; required for cortical localization of calmodulin; GO_component: GO:0005885 - Arp2/3 protein complex [Evidence IDA] [PMID 10377407]; GO_component: GO:0005885 - Arp2/3 protein complex [Evidence IDA] [PMID 9210376]; GO_component: GO:0030479 - actin cortical patch [Evidence IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence IPI] [PMID 14554195]; GO_function: GO:0003779 - actin binding [Evidence IEA]; GO_function: GO:0005198 - structural molecule activity [Evidence IMP] [PMID 10377407]; GO_process: GO:0030036 - actin cytoskeleton organization [Evidence IGI,IMP,IPI] [PMID 14554195]; GO_process: GO:0000226 - microtubule cytoskeleton organization [Evidence IGI,IMP,IPI] [PMID 14554195]; GO_process: GO:0000001 - mitochondrion inheritance [Evidence TAS] [PMID 11248049]; GO_process: GO:0006898 - receptor-mediated endocytosis [Evidence IMP] [PMID 7929582]; GO_process: GO:0030833 - regulation of actin filament polymerization [Evidence IEA]; Arc35p 2489710 ARC35 30037859 ARC35 Sugiyamaella lignohabitans Arc35p XP_018735010.1 2488772 D 796027 CDS AWJ20_790 30037861 complement(2490026..2490727) A 1 NC_031672.1 Mitochondrial protein; may interact with ribosomes based on co-purification experiments; similar to E. coli and human mitochondrial S12 ribosomal proteins; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0005763 - mitochondrial small ribosomal subunit [Evidence ISA] [PMID 12392552]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA,IEA]; GO_component: GO:0005840 - ribosome [Evidence IDA] [PMID 16702403]; GO_component: GO:0015935 - small ribosomal subunit [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence ISA] [PMID 12392552]; GO_process: GO:0032543 - mitochondrial translation [Evidence ISA] [PMID 12392552]; GO_process: GO:0006412 - translation [Evidence IEA]; putative mitochondrial 37S ribosomal protein MRPS12 2490727 MRPS12 30037861 MRPS12 Sugiyamaella lignohabitans putative mitochondrial 37S ribosomal protein MRPS12 XP_018735011.1 2490026 R 796027 CDS AWJ20_791 30037862 2491598..2492572 A 1 NC_031672.1 Putative serine/threonine protein phosphatase; putative phosphatase of the type 2A-like phosphatase family, required for glycogen accumulation; interacts with Tap42p, which binds to and regulates other protein phosphatases; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA,IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004721 - phosphoprotein phosphatase activity [Evidence IEA,IEA]; GO_function: GO:0004722 - protein serine/threonine phosphatase activity [Evidence ISS] [PMID 7678255]; GO_process: GO:0005977 - glycogen metabolic process [Evidence IMP] [PMID 7678255]; GO_process: GO:0006470 - protein dephosphorylation [Evidence ISS] [PMID 7678255]; putative serine/threonine-protein kinase PPG1 2492572 PPG1 30037862 PPG1 Sugiyamaella lignohabitans putative serine/threonine-protein kinase PPG1 XP_018735012.1 2491598 D 796027 CDS AWJ20_792 30037863 2497380..2498201 A 1 NC_031672.1 one of three or four genes related to conserved fungal hypothetical proteins (NCU00659.1, MG03673.4, AN4711.2); conserved fungal hypothetical protein 2498201 HWH4 30037863 HWH4 Sugiyamaella lignohabitans conserved fungal hypothetical protein XP_018735013.1 2497380 D 796027 CDS AWJ20_793 30037864 2502062..2503144 A 1 NC_031672.1 Aminophospholipid translocase (flippase); localizes primarily to the plasma membrane; contributes to endocytosis, protein transport and cell polarity; type 4 P-type ATPase; DNF2 has a paralog, DNF1, that arose from the whole genome duplication; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 12221123]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 12631737]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0019829 - cation-transporting ATPase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0000287 - magnesium ion binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_function: GO:0004012 - phospholipid-translocating ATPase activity [Evidence IEA,IEA]; GO_function: GO:0004012 - phospholipid-translocating ATPase activity [Evidence IGI,IMP] [PMID 12631737]; GO_function: GO:0004012 - phospholipid-translocating ATPase activity [Evidence IGI,IMP] [PMID 17015438]; GO_process: GO:0006812 - cation transport [Evidence IEA]; GO_process: GO:0006897 - endocytosis [Evidence IGI,IMP] [PMID 12631737]; GO_process: GO:0007163 - establishment or maintenance of cell polarity [Evidence IGI] [PMID 15461661]; GO_process: GO:0006886 - intracellular protein transport [Evidence IGI] [PMID 12221123]; GO_process: GO:0006869 - lipid transport [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0045332 - phospholipid translocation [Evidence IGI,IMP] [PMID 12631737]; GO_process: GO:0045332 - phospholipid translocation [Evidence IGI,IMP] [PMID 17015438]; GO_process: GO:0015914 - phospholipid transport [Evidence IEA]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; aminophospholipid-translocating P4-type ATPase DNF2 2503144 DNF2 30037864 DNF2 Sugiyamaella lignohabitans aminophospholipid-translocating P4-type ATPase DNF2 XP_018735014.1 2502062 D 796027 CDS AWJ20_794 30037865 2503238..2507401 A 1 NC_031672.1 Aminophospholipid translocase (flippase); localizes primarily to the plasma membrane; contributes to endocytosis, protein transport and cell polarity; type 4 P-type ATPase; DNF1 has a paralog, DNF2, that arose from the whole genome duplication; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA,IEA]; GO_component: GO:0005768 - endosome [Evidence IEA]; GO_component: GO:0010008 - endosome membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 12221123]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 12631737]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0015662 - ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism [Evidence ISS] [PMID 9224683]; GO_function: GO:0019829 - cation-transporting ATPase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0000287 - magnesium ion binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_function: GO:0004012 - phospholipid-translocating ATPase activity [Evidence IEA,IEA]; GO_function: GO:0004012 - phospholipid-translocating ATPase activity [Evidence IGI] [PMID 12631737]; GO_function: GO:0004012 - phospholipid-translocating ATPase activity [Evidence IGI,IMP] [PMID 17015438]; GO_process: GO:0006812 - cation transport [Evidence IEA]; GO_process: GO:0006897 - endocytosis [Evidence IGI,IMP] [PMID 12631737]; GO_process: GO:0007163 - establishment or maintenance of cell polarity [Evidence IGI] [PMID 15461661]; GO_process: GO:0006886 - intracellular protein transport [Evidence IGI] [PMID 12221123]; GO_process: GO:0006869 - lipid transport [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0045332 - phospholipid translocation [Evidence IGI] [PMID 12631737]; GO_process: GO:0045332 - phospholipid translocation [Evidence IGI,IMP] [PMID 17015438]; GO_process: GO:0015914 - phospholipid transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; aminophospholipid-translocating P4-type ATPase DNF1 2507401 DNF1 30037865 DNF1 Sugiyamaella lignohabitans aminophospholipid-translocating P4-type ATPase DNF1 XP_018735015.1 2503238 D 796027 CDS AWJ20_795 30037866 complement(2505406..2505705) A 1 NC_031672.1 uncharacterized protein 2505705 30037866 AWJ20_795 Sugiyamaella lignohabitans uncharacterized protein XP_018735016.1 2505406 R 796027 CDS AWJ20_796 30037867 complement(2507650..2509026) A 1 NC_031672.1 Ethanolamine kinase; primarily responsible for phosphatidylethanolamine synthesis via the CDP-ethanolamine pathway; exhibits some choline kinase activity, thus contributing to phosphatidylcholine synthesis via the CDP-choline pathway; EKI1 has a paralog, CKI1, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0004103 - choline kinase activity [Evidence IDA,IGI,ISS] [PMID 10329685]; GO_function: GO:0004305 - ethanolamine kinase activity [Evidence IEA]; GO_function: GO:0004305 - ethanolamine kinase activity [Evidence IDA,IGI,IMP,ISS] [PMID 10329685]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016773 - phosphotransferase activity, alcohol group as acceptor [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016772 - transferase activity, transferring phosphorus-containing groups [Evidence IEA]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0006656 - phosphatidylcholine biosynthetic process [Evidence IGI,IMP] [PMID 10329685]; GO_process: GO:0006646 - phosphatidylethanolamine biosynthetic process [Evidence IEA]; GO_process: GO:0006646 - phosphatidylethanolamine biosynthetic process [Evidence IGI,IMP] [PMID 10329685]; GO_process: GO:0008654 - phospholipid biosynthetic process [Evidence IEA]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; bifunctional choline kinase/ethanolamine kinase EKI1 2509026 EKI1 30037867 EKI1 Sugiyamaella lignohabitans bifunctional choline kinase/ethanolamine kinase EKI1 XP_018735017.1 2507650 R 796027 CDS AWJ20_797 30037868 complement(2511271..2512854) A 1 NC_031672.1 Co-chaperone that stimulates the ATPase activity of Ssa1p; required for a late step of ribosome biogenesis; associated with the cytosolic large ribosomal subunit; contains a J-domain; mutation causes defects in fluid-phase endocytosis; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 20368619]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 17242366]; GO_component: GO:0022625 - cytosolic large ribosomal subunit [Evidence IDA] [PMID 17242366]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005730 - nucleolus [Evidence IMP] [PMID 20368619]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 23212245]; GO_function: GO:0001671 - ATPase activator activity [Evidence IDA] [PMID 17242366]; GO_function: GO:0046872 - metal ion binding [Evidence IEA,IEA]; GO_process: GO:0006897 - endocytosis [Evidence IMP] [PMID 11378903]; GO_process: GO:0006364 - rRNA processing [Evidence IMP] [PMID 20368619]; GO_process: GO:0008361 - regulation of cell size [Evidence IMP] [PMID 12089449]; GO_process: GO:0042273 - ribosomal large subunit biogenesis [Evidence IMP] [PMID 17242366]; GO_process: GO:0000054 - ribosomal subunit export from nucleus [Evidence IMP] [PMID 20368619]; Jjj1p 2512854 JJJ1 30037868 JJJ1 Sugiyamaella lignohabitans Jjj1p XP_018735018.1 2511271 R 796027 CDS AWJ20_798 30037869 2514204..2514941 A 1 NC_031672.1 Delta 2-isopentenyl pyrophosphate:tRNA isopentenyl transferase; required for biosynthesis of the modified base isopentenyladenosine in mitochondrial and cytoplasmic tRNAs; gene is nuclear and encodes two isozymic forms; converts to a prion form, and prion conversion contributes to azole antifungal resistance by upregulating ergosterol biosynthesis; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 9872948]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 9872948]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 9872948]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9872948]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0052381 - tRNA dimethylallyltransferase activity [Evidence IEA]; GO_function: GO:0052381 - tRNA dimethylallyltransferase activity [Evidence IDA] [PMID 18852462]; GO_function: GO:0052381 - tRNA dimethylallyltransferase activity [Evidence IDA] [PMID 3031456]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006400 - tRNA modification [Evidence IDA] [PMID 18852462]; GO_process: GO:0006400 - tRNA modification [Evidence IMP] [PMID 3031456]; GO_process: GO:0008033 - tRNA processing [Evidence IEA,IEA]; Mod5p 2514941 MOD5 30037869 MOD5 Sugiyamaella lignohabitans Mod5p XP_018735019.1 2514204 D 796027 CDS AWJ20_799 30037870 complement(2515000..2515329) A 1 NC_031672.1 uncharacterized protein 2515329 30037870 AWJ20_799 Sugiyamaella lignohabitans uncharacterized protein XP_018735020.1 2515000 R 796027 CDS AWJ20_800 30037873 complement(2515560..2517113) A 1 NC_031672.1 Protein involved in proteolytic activation of Rim101p; part of response to alkaline pH; PalA/AIP1/Alix family member; interaction with the ESCRT-III subunit Snf7p suggests a relationship between pH response and multivesicular body formation; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0001403 - invasive growth in response to glucose limitation [Evidence IMP] [PMID 11698381]; GO_process: GO:0016485 - protein processing [Evidence IDA,IGI,IMP] [PMID 11698381]; GO_process: GO:0006508 - proteolysis [Evidence IMP] [PMID 11698381]; GO_process: GO:0009268 - response to pH [Evidence IMP] [PMID 11698381]; GO_process: GO:0030435 - sporulation resulting in formation of a cellular spore [Evidence IMP] [PMID 11698381]; Rim20p 2517113 RIM20 30037873 RIM20 Sugiyamaella lignohabitans Rim20p XP_018735021.1 2515560 R 796027 CDS AWJ20_801 30037874 complement(2517657..2520212) A 1 NC_031672.1 Gamma-adaptin; large subunit of the clathrin-associated protein (AP-1) complex; binds clathrin; involved in vesicle mediated transport; GO_component: GO:0030121 - AP-1 adaptor complex [Evidence IPI,ISS] [PMID 10564262]; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA,IEA]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA]; GO_component: GO:0030131 - clathrin adaptor complex [Evidence IEA]; GO_component: GO:0030665 - clathrin-coated vesicle membrane [Evidence IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0031410 - cytoplasmic vesicle [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0030117 - membrane coat [Evidence IEA]; GO_function: GO:0030276 - clathrin binding [Evidence IPI,ISS] [PMID 10564262]; GO_function: GO:0008565 - protein transporter activity [Evidence IEA]; GO_process: GO:0006896 - Golgi to vacuole transport [Evidence IMP] [PMID 17003107]; GO_process: GO:0006886 - intracellular protein transport [Evidence IEA]; GO_process: GO:0015031 - protein transport [Evidence IEA,IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IEA]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IPI,ISS] [PMID 10564262]; Apl4p 2520212 APL4 30037874 APL4 Sugiyamaella lignohabitans Apl4p XP_018735022.1 2517657 R 796027 CDS AWJ20_802 30037875 complement(2520801..2523704) A 1 NC_031672.1 Component of the Sec23p-Sec24p heterodimer of the COPII vesicle coat; required for cargo selection during vesicle formation in ER to Golgi transport; homologous to Sfb3p; SEC24 has a paralog, SFB2, that arose from the whole genome duplication; GO_component: GO:0030127 - COPII vesicle coat [Evidence IEA]; GO_component: GO:0030127 - COPII vesicle coat [Evidence IDA] [PMID 8004676]; GO_component: GO:0012507 - ER to Golgi transport vesicle membrane [Evidence IEA]; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0031410 - cytoplasmic vesicle [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0005048 - signal sequence binding [Evidence IMP] [PMID 12941277]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0006888 - ER to Golgi vesicle-mediated transport [Evidence IEA]; GO_process: GO:0090110 - cargo loading into COPII-coated vesicle [Evidence IDA] [PMID 12941277]; GO_process: GO:0090110 - cargo loading into COPII-coated vesicle [Evidence IDA] [PMID 14627716]; GO_process: GO:0090110 - cargo loading into COPII-coated vesicle [Evidence IDA] [PMID 15665868]; GO_process: GO:0006886 - intracellular protein transport [Evidence IEA]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IEA]; COPII subunit SEC24 2523704 SEC24 30037875 SEC24 Sugiyamaella lignohabitans COPII subunit SEC24 XP_018735023.1 2520801 R 796027 CDS AWJ20_803 30037876 2528585..2529733 A 1 NC_031672.1 tRNA-specific 2-thiouridylase; responsible for 2-thiolation of the wobble base of mitochondrial tRNAs; human ortholog is implicated in myoclonus epilepsy associated with ragged red fibers (MERRF); GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 15944150]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016783 - sulfurtransferase activity [Evidence IEA]; GO_function: GO:0004808 - tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity [Evidence ISS] [PMID 10592175]; GO_function: GO:0004808 - tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity [Evidence IMP] [PMID 15509579]; GO_function: GO:0000049 - tRNA binding [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA,IEA]; GO_process: GO:0070903 - mitochondrial tRNA thio-modification [Evidence IMP] [PMID 15509579]; GO_process: GO:0008033 - tRNA processing [Evidence IEA,IEA]; Slm3p 2529733 SLM3 30037876 SLM3 Sugiyamaella lignohabitans Slm3p XP_018735024.1 2528585 D 796027 CDS AWJ20_804 30037877 complement(2530135..2530587) A 1 NC_031672.1 putative palmitoyltransferase ZDHHC20 2530587 30037877 AWJ20_804 Sugiyamaella lignohabitans putative palmitoyltransferase ZDHHC20 XP_018735025.1 2530135 R 796027 CDS AWJ20_806 30037879 2533750..2535537 A 1 NC_031672.1 Mitochondrial external NADH dehydrogenase; type II NAD(P)H:quinone oxidoreductase that catalyzes the oxidation of cytosolic NADH; Nde1p and Nde2p provide cytosolic NADH to the mitochondrial respiratory chain; NDE1 has a paralog, NDE2, that arose from the whole genome duplication; GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IDA,IMP] [PMID 9696750]; GO_component: GO:0005739 - mitochondrion [Evidence IDA,IMP] [PMID 9733747]; GO_function: GO:0003954 - NADH dehydrogenase activity [Evidence IDA,ISS] [PMID 9696750]; GO_function: GO:0003954 - NADH dehydrogenase activity [Evidence IDA,ISS] [PMID 9733747]; GO_function: GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_process: GO:0006116 - NADH oxidation [Evidence IDA] [PMID 12032156]; GO_process: GO:0001300 - chronological cell aging [Evidence IMP] [PMID 16436509]; GO_process: GO:0019655 - glucose catabolic process to ethanol [Evidence IMP] [PMID 9696750]; GO_process: GO:0019655 - glucose catabolic process to ethanol [Evidence IMP] [PMID 9733747]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; NADH-ubiquinone reductase (H(+)-translocating) NDE1 2535537 NDE1 30037879 NDE1 Sugiyamaella lignohabitans NADH-ubiquinone reductase (H(+)-translocating) NDE1 XP_018735026.1 2533750 D 796027 CDS AWJ20_807 30037880 2536938..2538782 A 1 NC_031672.1 Phosphatidylinositol-4-phosphate 5-kinase; involved in actin cytoskeleton organization and cell morphogenesis; multicopy suppressor of stt4 mutation; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9624177]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 9624177]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IEA]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IDA] [PMID 9624177]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IDA] [PMID 9624178]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016307 - phosphatidylinositol phosphate kinase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0031321 - ascospore-type prospore assembly [Evidence IGI] [PMID 19502581]; GO_process: GO:0046488 - phosphatidylinositol metabolic process [Evidence IEA]; GO_process: GO:0046854 - phosphatidylinositol phosphorylation [Evidence IDA] [PMID 9624177]; GO_process: GO:0046854 - phosphatidylinositol phosphorylation [Evidence IDA] [PMID 9624178]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; 1-phosphatidylinositol-4-phosphate 5-kinase 2538782 MSS4 30037880 MSS4 Sugiyamaella lignohabitans 1-phosphatidylinositol-4-phosphate 5-kinase XP_018735027.1 2536938 D 796027 CDS AWJ20_808 30037881 2545284..2545655 A 1 NC_031672.1 uncharacterized protein 2545655 30037881 AWJ20_808 Sugiyamaella lignohabitans uncharacterized protein XP_018735028.1 2545284 D 796027 CDS AWJ20_809 30037882 complement(2547380..2550007) A 1 NC_031672.1 Karyopherin beta; forms a complex with Srp1p/Kap60p; interacts with nucleoporins to mediate nuclear import of NLS-containing cargo proteins via the nuclear pore complex; regulates PC biosynthesis; GDP-to-GTP exchange factor for Gsp1p; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 10684247]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0005635 - nuclear envelope [Evidence IEA]; GO_component: GO:0000176 - nuclear exosome (RNase complex) [Evidence IDA] [PMID 19046973]; GO_component: GO:0005643 - nuclear pore [Evidence IDA] [PMID 10684247]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_function: GO:0008536 - Ran GTPase binding [Evidence IEA]; GO_function: GO:0005087 - Ran guanyl-nucleotide exchange factor activity [Evidence IDA] [PMID 19549784]; GO_function: GO:0008565 - protein transporter activity [Evidence IEA]; GO_function: GO:0008565 - protein transporter activity [Evidence IDA] [PMID 7622450]; GO_process: GO:0006886 - intracellular protein transport [Evidence IEA]; GO_process: GO:0051292 - nuclear pore complex assembly [Evidence IMP] [PMID 17182855]; GO_process: GO:0006913 - nucleocytoplasmic transport [Evidence IEA]; GO_process: GO:0006656 - phosphatidylcholine biosynthetic process [Evidence IGI,IMP] [PMID 19141610]; GO_process: GO:0006606 - protein import into nucleus [Evidence IMP] [PMID 19141610]; GO_process: GO:0006606 - protein import into nucleus [Evidence IMP] [PMID 23131016]; GO_process: GO:0006612 - protein targeting to membrane [Evidence IMP] [PMID 16929305]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0060188 - regulation of protein desumoylation [Evidence IMP] [PMID 17403926]; GO_process: GO:0006810 - transport [Evidence IEA]; Kap95p 2550007 KAP95 30037882 KAP95 Sugiyamaella lignohabitans Kap95p XP_018735029.1 2547380 R 796027 CDS AWJ20_810 30037884 complement(2551481..2553766) A 1 NC_031672.1 Nuclease required for DNA single- and double-strand break repair; acts at a post-incision step in repair of breaks that result from interstrand cross-links produced by a variety of mono- and bi-functional psoralen derivatives; induced by UV-irradiation; forms nuclear foci upon DNA replication stress; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IC] [PMID 1736091]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_function: GO:0008409 - 5'-3' exonuclease activity [Evidence IDA,IMP] [PMID 15590324]; GO_function: GO:0003684 - damaged DNA binding [Evidence IMP] [PMID 7035927]; GO_function: GO:0004527 - exonuclease activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA,IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004518 - nuclease activity [Evidence IEA]; GO_process: GO:0006281 - DNA repair [Evidence IEA]; GO_process: GO:0006281 - DNA repair [Evidence IMP] [PMID 1736091]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0006302 - double-strand break repair [Evidence TAS] [PMID 12509272]; GO_process: GO:0036297 - interstrand cross-link repair [Evidence IGI,IMP] [PMID 22912599]; GO_process: GO:0090305 - nucleic acid phosphodiester bond hydrolysis [Evidence IEA]; Pso2p 2553766 PSO2 30037884 PSO2 Sugiyamaella lignohabitans Pso2p XP_018735030.1 2551481 R 796027 CDS AWJ20_811 30037885 complement(2555341..2556969) A 1 NC_031672.1 Allantoate permease; ureidosuccinate permease; also transports dipeptides, though with lower affinity than for allantoate and ureidosuccinate; expression is constitutive but sensitive to nitrogen catabolite repression; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IMP,ISS] [PMID 3275614]; GO_function: GO:0015124 - allantoate transmembrane transporter activity [Evidence IMP,ISS] [PMID 3275614]; GO_function: GO:0042936 - dipeptide transporter activity [Evidence IMP] [PMID 16429164]; GO_function: GO:0042936 - dipeptide transporter activity [Evidence IGI,IMP] [PMID 17693598]; GO_function: GO:0005215 - transporter activity [Evidence IEA]; GO_process: GO:0015719 - allantoate transport [Evidence IMP] [PMID 3275614]; GO_process: GO:0042938 - dipeptide transport [Evidence IMP] [PMID 16429164]; GO_process: GO:0042938 - dipeptide transport [Evidence IGI,IMP] [PMID 17693598]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; GO_process: GO:0042939 - tripeptide transport [Evidence IMP] [PMID 16429164]; allantoate permease 2556969 DAL5 30037885 DAL5 Sugiyamaella lignohabitans allantoate permease XP_018735031.1 2555341 R 796027 CDS AWJ20_812 30037886 2577587..2578291 A 1 NC_031672.1 uncharacterized protein 2578291 30037886 AWJ20_812 Sugiyamaella lignohabitans uncharacterized protein XP_018735032.1 2577587 D 796027 CDS AWJ20_813 30037887 complement(2578724..2580721) A 1 NC_031672.1 Zinc cluster protein proposed to be a transcriptional regulator; regulator involved in the stress response; null mutants have a respiratory deficiency, calcofluor white sensitivity and slightly increased cycloheximide resistance; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19111667]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19158363]; GO_function: GO:0000981 - sequence-specific DNA binding RNA polymerase II transcription factor activity [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence IEA]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA,IEA]; GO_process: GO:0006950 - response to stress [Evidence IEA]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA,IEA]; Asg1p 2580721 ASG1 30037887 ASG1 Sugiyamaella lignohabitans Asg1p XP_018735033.1 2578724 R 796027 CDS AWJ20_814 30037888 complement(join(2582668..2583981,2584210..2584248)) A 1 NC_031672.1 uncharacterized protein 2584248 30037888 AWJ20_814 Sugiyamaella lignohabitans uncharacterized protein XP_018735034.1 2582668 R 796027 CDS AWJ20_815 30037889 2584531..2585649 A 1 NC_031672.1 Essential protein involved in the TOR signaling pathway; physically associates with the protein phosphatase 2A and the SIT4 protein phosphatase catalytic subunits; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 16874307]; GO_component: GO:0019898 - extrinsic component of membrane [Evidence IDA] [PMID 16874307]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0031929 - TOR signaling [Evidence IMP] [PMID 8756348]; GO_process: GO:0009968 - negative regulation of signal transduction [Evidence IEA]; GO_process: GO:0045943 - positive regulation of transcription from RNA polymerase I promoter [Evidence IGI,IMP] [PMID 19684113]; GO_process: GO:0009966 - regulation of signal transduction [Evidence IEA]; Tap42p 2585649 TAP42 30037889 TAP42 Sugiyamaella lignohabitans Tap42p XP_018735035.1 2584531 D 796027 CDS AWJ20_816 30037890 complement(2585774..2588956) A 1 NC_031672.1 Metalloprotease; involved in N-terminal processing of pro-a-factor to the mature form; expressed in both haploids and diploids; member of the insulin-degrading enzyme family; homolog Axl1p is also involved in processing of pro-a-factor; GO_component: GO:0019898 - extrinsic component of membrane [Evidence IDA] [PMID 15944156]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA,IEA]; GO_function: GO:0004222 - metalloendopeptidase activity [Evidence IEA]; GO_function: GO:0004222 - metalloendopeptidase activity [Evidence IDA] [PMID 19750477]; GO_function: GO:0008237 - metallopeptidase activity [Evidence IEA]; GO_function: GO:0008237 - metallopeptidase activity [Evidence ISS] [PMID 7569998]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_process: GO:0007323 - peptide pheromone maturation [Evidence IGI] [PMID 7569998]; GO_process: GO:0006508 - proteolysis [Evidence IEA,IEA]; GO_process: GO:0019236 - response to pheromone [Evidence IEA]; Ste23p 2588956 STE23 30037890 STE23 Sugiyamaella lignohabitans Ste23p XP_018735036.1 2585774 R 796027 CDS AWJ20_817 30037891 complement(2591378..2593225) A 1 NC_031672.1 Phosphatidylinositol-4-phosphate 5-kinase; involved in actin cytoskeleton organization and cell morphogenesis; multicopy suppressor of stt4 mutation; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9624177]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 9624177]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IEA]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IDA] [PMID 9624177]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IDA] [PMID 9624178]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016307 - phosphatidylinositol phosphate kinase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0031321 - ascospore-type prospore assembly [Evidence IGI] [PMID 19502581]; GO_process: GO:0046488 - phosphatidylinositol metabolic process [Evidence IEA]; GO_process: GO:0046854 - phosphatidylinositol phosphorylation [Evidence IDA] [PMID 9624177]; GO_process: GO:0046854 - phosphatidylinositol phosphorylation [Evidence IDA] [PMID 9624178]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; 1-phosphatidylinositol-4-phosphate 5-kinase 2593225 MSS4 30037891 MSS4 Sugiyamaella lignohabitans 1-phosphatidylinositol-4-phosphate 5-kinase XP_018735037.1 2591378 R 796027 CDS AWJ20_818 30037892 complement(2595027..2595932) A 1 NC_031672.1 Phosphatidylinositol-4-phosphate 5-kinase; involved in actin cytoskeleton organization and cell morphogenesis; multicopy suppressor of stt4 mutation; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9624177]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 9624177]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IEA]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IDA] [PMID 9624177]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IDA] [PMID 9624178]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016307 - phosphatidylinositol phosphate kinase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0031321 - ascospore-type prospore assembly [Evidence IGI] [PMID 19502581]; GO_process: GO:0046488 - phosphatidylinositol metabolic process [Evidence IEA]; GO_process: GO:0046854 - phosphatidylinositol phosphorylation [Evidence IDA] [PMID 9624177]; GO_process: GO:0046854 - phosphatidylinositol phosphorylation [Evidence IDA] [PMID 9624178]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; 1-phosphatidylinositol-4-phosphate 5-kinase 2595932 MSS4 30037892 MSS4 Sugiyamaella lignohabitans 1-phosphatidylinositol-4-phosphate 5-kinase XP_018735038.1 2595027 R 796027 CDS AWJ20_819 30037893 2605318..2607576 A 1 NC_031672.1 E3 ubiquitin ligase of the NEDD4 family; involved in regulating many cellular processes including MVB sorting, heat shock response, transcription, endocytosis, and ribosome stability; human homolog is involved in Liddle syndrome; mutant tolerates aneuploidy; deubiquitinated by Ubp2p; autoubiquitinates and ubiquitinates Sec23p and Sna3p; required for efficient Golgi-to-ER trafficking in COPI mutants; GO_component: GO:0005794 - Golgi apparatus [Evidence IDA] [PMID 14657247]; GO_component: GO:0030479 - actin cortical patch [Evidence IEA]; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 14608372]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14657247]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 15078904]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA]; GO_component: GO:0010008 - endosome membrane [Evidence IDA] [PMID 14657247]; GO_component: GO:0031234 - extrinsic component of cytoplasmic side of plasma membrane [Evidence IDA] [PMID 15078904]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14608372]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 16622836]; GO_component: GO:0000151 - ubiquitin ligase complex [Evidence IPI] [PMID 9931424]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0035091 - phosphatidylinositol binding [Evidence IDA] [PMID 15078904]; GO_function: GO:0043130 - ubiquitin binding [Evidence IDA] [PMID 19252184]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence IEA]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence IDA,IMP] [PMID 21685393]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence IDA,IMP] [PMID 9108033]; GO_process: GO:0034644 - cellular response to UV [Evidence IMP] [PMID 10490634]; GO_process: GO:0006333 - chromatin assembly or disassembly [Evidence IMP] [PMID 12399376]; GO_process: GO:0032511 - late endosome to vacuole transport via multivesicular body sorting pathway [Evidence IMP,IPI] [PMID 17182849]; GO_process: GO:0007005 - mitochondrion organization [Evidence IGI,IMP] [PMID 10366593]; GO_process: GO:0045807 - positive regulation of endocytosis [Evidence IMP] [PMID 12654912]; GO_process: GO:0045723 - positive regulation of fatty acid biosynthetic process [Evidence IMP] [PMID 11007476]; GO_process: GO:0048260 - positive regulation of receptor-mediated endocytosis [Evidence IMP] [PMID 11179425]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 11007476]; GO_process: GO:0043161 - proteasome-mediated ubiquitin-dependent protein catabolic process [Evidence IPI] [PMID 15713680]; GO_process: GO:0051865 - protein autoubiquitination [Evidence IGI] [PMID 24069405]; GO_process: GO:0006513 - protein monoubiquitination [Evidence IGI,IMP] [PMID 14761940]; GO_process: GO:0006513 - protein monoubiquitination [Evidence IDA,IGI,IMP] [PMID 19176477]; GO_process: GO:0006513 - protein monoubiquitination [Evidence IDA,IMP] [PMID 21685393]; GO_process: GO:0000209 - protein polyubiquitination [Evidence IDA,IMP] [PMID 9108033]; GO_process: GO:0016567 - protein ubiquitination [Evidence IEA]; GO_process: GO:0042787 - protein ubiquitination involved in ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 9614172]; GO_process: GO:0032956 - regulation of actin cytoskeleton organization [Evidence IGI] [PMID 15855235]; GO_process: GO:0010794 - regulation of dolichol biosynthetic process [Evidence IGI,IMP] [PMID 18771750]; GO_process: GO:0032443 - regulation of ergosterol biosynthetic process [Evidence IGI,IMP] [PMID 18771750]; GO_process: GO:0031384 - regulation of initiation of mating projection growth [Evidence IMP] [PMID 21685393]; GO_process: GO:0010793 - regulation of mRNA export from nucleus [Evidence IMP] [PMID 14608372]; GO_process: GO:0010793 - regulation of mRNA export from nucleus [Evidence IPI] [PMID 15713680]; GO_process: GO:0010796 - regulation of multivesicular body size [Evidence IMP] [PMID 17182850]; GO_process: GO:0006808 - regulation of nitrogen utilization [Evidence IGI] [PMID 15247235]; GO_process: GO:0019220 - regulation of phosphate metabolic process [Evidence IGI] [PMID 18165238]; GO_process: GO:0032880 - regulation of protein localization [Evidence IMP,IPI] [PMID 12867034]; GO_process: GO:2000232 - regulation of rRNA processing [Evidence IMP] [PMID 14608372]; GO_process: GO:2000203 - regulation of ribosomal large subunit export from nucleus [Evidence IMP] [PMID 14608372]; GO_process: GO:2000238 - regulation of tRNA export from nucleus [Evidence IMP] [PMID 14608372]; GO_process: GO:2000235 - regulation of tRNA processing [Evidence IMP] [PMID 14608372]; GO_process: GO:0010795 - regulation of ubiquinone biosynthetic process [Evidence IGI,IMP] [PMID 18771750]; GO_process: GO:0042493 - response to drug [Evidence IMP,IPI] [PMID 12163175]; GO_process: GO:0034517 - ribophagy [Evidence IGI] [PMID 18670191]; GO_process: GO:0070086 - ubiquitin-dependent endocytosis [Evidence IMP] [PMID 17344478]; GO_process: GO:0043162 - ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway [Evidence IMP] [PMID 17344478]; NEDD4 family E3 ubiquitin-protein ligase 2607576 RSP5 30037893 RSP5 Sugiyamaella lignohabitans NEDD4 family E3 ubiquitin-protein ligase XP_018735039.1 2605318 D 796027 CDS AWJ20_820 30037895 2608570..2610360 A 1 NC_031672.1 Permease of basic amino acids in the vacuolar membrane; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 15572352]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0015174 - basic amino acid transmembrane transporter activity [Evidence IDA,IMP] [PMID 15572352]; GO_process: GO:0006865 - amino acid transport [Evidence IEA]; GO_process: GO:0015802 - basic amino acid transport [Evidence IMP] [PMID 15572352]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Vba1p 2610360 VBA1 30037895 VBA1 Sugiyamaella lignohabitans Vba1p XP_018735040.1 2608570 D 796027 CDS AWJ20_821 30037896 2614469..2615704 A 1 NC_031672.1 Subunit of DNA primase; DNA primase is required for DNA synthesis and double-strand break repair; GO_component: GO:0005658 - alpha DNA polymerase:primase complex [Evidence IDA] [PMID 22593576]; GO_component: GO:0005658 - alpha DNA polymerase:primase complex [Evidence IDA] [PMID 3888995]; GO_component: GO:0043596 - nuclear replication fork [Evidence IDA] [PMID 16103218]; GO_component: GO:1990077 - primosome complex [Evidence IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0003896 - DNA primase activity [Evidence IEA]; GO_function: GO:0003896 - DNA primase activity [Evidence IDA] [PMID 2644256]; GO_function: GO:0003896 - DNA primase activity [Evidence IDA] [PMID 3061469]; GO_function: GO:0003896 - DNA primase activity [Evidence IDA] [PMID 3888995]; GO_function: GO:0003896 - DNA primase activity [Evidence IGI,IMP] [PMID 8436268]; GO_function: GO:0003899 - DNA-directed RNA polymerase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016779 - nucleotidyltransferase activity [Evidence IEA]; GO_function: GO:0003697 - single-stranded DNA binding [Evidence IDA] [PMID 20404922]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006260 - DNA replication [Evidence IEA]; GO_process: GO:0006260 - DNA replication [Evidence IMP] [PMID 2023935]; GO_process: GO:0006270 - DNA replication initiation [Evidence IC] [PMID 3888995]; GO_process: GO:0006269 - DNA replication, synthesis of RNA primer [Evidence IEA,IEA]; GO_process: GO:0006269 - DNA replication, synthesis of RNA primer [Evidence IDA] [PMID 2644256]; GO_process: GO:0006273 - lagging strand elongation [Evidence IC] [PMID 3888995]; DNA primase subunit PRI1 2615704 PRI1 30037896 PRI1 Sugiyamaella lignohabitans DNA primase subunit PRI1 XP_018735041.1 2614469 D 796027 CDS AWJ20_822 30037897 2616117..2616851 A 1 NC_031672.1 uncharacterized protein 2616851 30037897 AWJ20_822 Sugiyamaella lignohabitans uncharacterized protein XP_018735042.1 2616117 D 796027 CDS AWJ20_823 30037898 complement(2617019..2618725) A 1 NC_031672.1 Ser/Thr kinase involved in late nuclear division; one of the mitotic exit network (MEN) proteins; necessary for the execution of cytokinesis; also plays a role in regulating the stability of SWI5 and CLB2 mRNAs; DBF20 has a paralog, DBF2, that arose from the whole genome duplication; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 12937277]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005816 - spindle pole body [Evidence IDA] [PMID 12937277]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0004672 - protein kinase activity [Evidence IEA]; GO_function: GO:0004674 - protein serine/threonine kinase activity [Evidence IEA,IEA]; GO_function: GO:0004674 - protein serine/threonine kinase activity [Evidence IDA] [PMID 8131744]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016772 - transferase activity, transferring phosphorus-containing groups [Evidence IEA]; GO_process: GO:0000917 - barrier septum assembly [Evidence IMP] [PMID 17005296]; GO_process: GO:0010458 - exit from mitosis [Evidence IGI,ISS] [PMID 1916278]; GO_process: GO:0000281 - mitotic cytokinesis [Evidence IGI] [PMID 12937277]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; GO_process: GO:0006468 - protein phosphorylation [Evidence IEA]; GO_process: GO:0006468 - protein phosphorylation [Evidence IDA] [PMID 8131744]; GO_process: GO:0061013 - regulation of mRNA catabolic process [Evidence IMP] [PMID 22196726]; serine/threonine-protein kinase DBF20 2618725 DBF20 30037898 DBF20 Sugiyamaella lignohabitans serine/threonine-protein kinase DBF20 XP_018735043.1 2617019 R 796027 CDS AWJ20_824 30037899 2619560..2621254 A 1 NC_031672.1 RanGTP-binding protein; inhibits RanGAP1 (Rna1p)-mediated GTP hydrolysis of RanGTP (Gsp1p); shares similarity to proteins in other fungi but not in higher eukaryotes; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 12578832]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IMP,ISS] [PMID 12578832]; GO_function: GO:0005096 - GTPase activator activity [Evidence IEA]; GO_function: GO:0030695 - GTPase regulator activity [Evidence IDA,IPI] [PMID 12578832]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0043547 - positive regulation of GTPase activity [Evidence IEA]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Yrb30p 2621254 YRB30 30037899 YRB30 Sugiyamaella lignohabitans Yrb30p XP_018735044.1 2619560 D 796027 CDS AWJ20_825 30037900 complement(2621429..2622979) A 1 NC_031672.1 Transcriptional activator involved in adaptation to weak acid stress; activates transcription of TPO2, YRO2, and other genes encoding membrane stress proteins; HAA1 has a paralog, CUP2, that arose from the whole genome duplication; relocalizes from cytoplasm to nucleus upon DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11504737]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0005507 - copper ion binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0000981 - sequence-specific DNA binding RNA polymerase II transcription factor activity [Evidence IDA] [PMID 21586585]; GO_function: GO:0003700 - sequence-specific DNA binding transcription factor activity [Evidence IEA]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IDA,IMP] [PMID 11504737]; GO_process: GO:0036003 - positive regulation of transcription from RNA polymerase II promoter in response to stress [Evidence IMP] [PMID 16176797]; GO_process: GO:0036003 - positive regulation of transcription from RNA polymerase II promoter in response to stress [Evidence IMP] [PMID 16980434]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA,IEA]; GO_process: GO:0001101 - response to acid [Evidence IMP] [PMID 16176797]; GO_process: GO:0001101 - response to acid [Evidence IMP] [PMID 16980434]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Haa1p 2622979 HAA1 30037900 HAA1 Sugiyamaella lignohabitans Haa1p XP_018735045.1 2621429 R 796027 CDS AWJ20_826 30037901 complement(2627063..2629345) A 1 NC_031672.1 GTPase-activating protein; negatively regulates RAS by converting it from the GTP- to the GDP-bound inactive form, required for reducing cAMP levels under nutrient limiting conditions, mediates membrane association of adenylate cyclase; mutations cause catalase T deficiency, defective glycogen synthesis and defective trehalose accumulation; IRA1 has a paralog, IRA2, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0031235 - intrinsic component of the cytoplasmic side of the plasma membrane [Evidence IBA]; GO_component: GO:0016020 - membrane [Evidence IMP,IPI] [PMID 1875942]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0005096 - GTPase activator activity [Evidence IEA,IEA]; GO_function: GO:0005099 - Ras GTPase activator activity [Evidence IMP] [PMID 2178777]; GO_process: GO:0046580 - negative regulation of Ras protein signal transduction [Evidence IMP] [PMID 15339905]; GO_process: GO:0030818 - negative regulation of cAMP biosynthetic process [Evidence IMP] [PMID 2540426]; GO_process: GO:0032320 - positive regulation of Ras GTPase activity [Evidence IMP] [PMID 2178777]; GO_process: GO:0045761 - regulation of adenylate cyclase activity [Evidence IMP] [PMID 1875942]; GO_process: GO:0051056 - regulation of small GTPase mediated signal transduction [Evidence IEA]; GO_process: GO:0007165 - signal transduction [Evidence IEA]; Ira1p 2629345 IRA1 30037901 IRA1 Sugiyamaella lignohabitans Ira1p XP_018735046.1 2627063 R 796027 CDS AWJ20_827 30037902 2630762..2635456 A 1 NC_031672.1 uncharacterized protein 2635456 30037902 AWJ20_827 Sugiyamaella lignohabitans uncharacterized protein XP_018735047.1 2630762 D 796027 CDS AWJ20_828 30037903 complement(2635578..2636465) A 1 NC_031672.1 Quinolinate phosphoribosyl transferase; required for the de novo biosynthesis of NAD from tryptophan via kynurenine; expression regulated by Hst1p; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0004514 - nicotinate-nucleotide diphosphorylase (carboxylating) activity [Evidence IEA,IEA]; GO_function: GO:0004514 - nicotinate-nucleotide diphosphorylase (carboxylating) activity [Evidence IMP] [PMID 12062417]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA]; GO_function: GO:0016763 - transferase activity, transferring pentosyl groups [Evidence IEA]; GO_process: GO:0034354 - 'de novo' NAD biosynthetic process from tryptophan [Evidence IGI] [PMID 12062417]; GO_process: GO:0009435 - NAD biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0019363 - pyridine nucleotide biosynthetic process [Evidence IEA,IEA]; nicotinate-nucleotide diphosphorylase (carboxylating) 2636465 BNA6 30037903 BNA6 Sugiyamaella lignohabitans nicotinate-nucleotide diphosphorylase (carboxylating) XP_018735048.1 2635578 R 796027 CDS AWJ20_829 30037904 complement(2636728..2639622) A 1 NC_031672.1 mRNA-binding protein PUF3 2639622 PUF3 30037904 PUF3 Sugiyamaella lignohabitans mRNA-binding protein PUF3 XP_018735049.1 2636728 R 796027 CDS AWJ20_830 30037906 complement(2640384..2641808) A 1 NC_031672.1 transcription factor TFIIIC subunit TFC1 2641808 TFC1 30037906 TFC1 Sugiyamaella lignohabitans transcription factor TFIIIC subunit TFC1 XP_018735050.1 2640384 R 796027 CDS AWJ20_831 30037907 complement(join(2642344..2643289,2643624..2643628,2643718..2643837)) A 1 NC_031672.1 protein phosphatase regulator SHP1 2643837 SHP1 30037907 SHP1 Sugiyamaella lignohabitans protein phosphatase regulator SHP1 XP_018735051.1 2642344 R 796027 CDS AWJ20_832 30037908 complement(2644085..2645032) A 1 NC_031672.1 uncharacterized protein 2645032 30037908 AWJ20_832 Sugiyamaella lignohabitans uncharacterized protein XP_018735052.1 2644085 R 796027 CDS AWJ20_833 30037909 complement(2646233..2647237) A 1 NC_031672.1 Glyoxylate reductase; null mutation results in increased biomass after diauxic shift; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0051287 - NAD binding [Evidence IEA]; GO_function: GO:0048037 - cofactor binding [Evidence IEA]; GO_function: GO:0047964 - glyoxylate reductase activity [Evidence IEA]; GO_function: GO:0047964 - glyoxylate reductase activity [Evidence IMP] [PMID 17173333]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor [Evidence IEA]; GO_function: GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor [Evidence ISS] [PMID 9341119]; GO_process: GO:0009436 - glyoxylate catabolic process [Evidence IMP] [PMID 17173333]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence ISS] [PMID 9341119]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; Gor1p 2647237 GOR1 30037909 GOR1 Sugiyamaella lignohabitans Gor1p XP_018735053.1 2646233 R 796027 CDS AWJ20_834 30037910 complement(2647514..2650594) A 1 NC_031672.1 uncharacterized protein 2650594 30037910 AWJ20_834 Sugiyamaella lignohabitans uncharacterized protein XP_018735054.1 2647514 R 796027 CDS AWJ20_835 30037911 2651824..2652414 A 1 NC_031672.1 hypothetical protein; YET3 null mutant decreases the level of secreted invertase; homolog of human BAP31 protein; protein abundance increases in response to DNA replication stress; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA,IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 11914276]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 20378542]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0006886 - intracellular protein transport [Evidence IEA]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IEA]; Yet3p 2652414 YET3 30037911 YET3 Sugiyamaella lignohabitans Yet3p XP_018735055.1 2651824 D 796027 CDS AWJ20_836 30037912 complement(2652610..2654508) A 1 NC_031672.1 Dihydrouridine synthase; member of a widespread family of conserved proteins including Smm1p, Dus1p, and Dus4p; contains a consensus oleate response element (ORE) in its promoter region; forms nuclear foci upon DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_function: GO:0046872 - metal ion binding [Evidence IEA,IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0017150 - tRNA dihydrouridine synthase activity [Evidence IEA]; GO_function: GO:0017150 - tRNA dihydrouridine synthase activity [Evidence ISS] [PMID 12003496]; GO_function: GO:0017150 - tRNA dihydrouridine synthase activity [Evidence IMP] [PMID 14970222]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0002943 - tRNA dihydrouridine synthesis [Evidence IEA]; GO_process: GO:0006400 - tRNA modification [Evidence ISS] [PMID 12003496]; GO_process: GO:0006400 - tRNA modification [Evidence IMP] [PMID 14970222]; GO_process: GO:0008033 - tRNA processing [Evidence IEA,IEA]; Dus3p 2654508 DUS3 30037912 DUS3 Sugiyamaella lignohabitans Dus3p XP_018735056.1 2652610 R 796027 CDS AWJ20_837 30037913 complement(2655008..2655424) A 1 NC_031672.1 some similarities with uniprot|P40033 Saccharomyces cerevisiae YER050C; mitochondrial 37S ribosomal protein RSM18 2655424 RSM18 30037913 RSM18 Sugiyamaella lignohabitans mitochondrial 37S ribosomal protein RSM18 XP_018735057.1 2655008 R 796027 CDS AWJ20_838 30037914 2655662..2658016 A 1 NC_031672.1 ATPase of the CDC48/PAS1/SEC18 (AAA) family, forms a hexameric complex; is essential for pre-60S maturation and release of several preribosome maturation factors; releases Rlp24p from purified pre-60S particles in vitro; target of the ribosomal biosynthesis inhibitor diazaborine; may be involved in degradation of aberrant mRNAs; GO_component: GO:0005622 - intracellular [Evidence IDA] [PMID 12006565]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA,IMP] [PMID 17646390]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 23212245]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016887 - ATPase activity [Evidence IDA] [PMID 12006565]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0042493 - response to drug [Evidence IMP] [PMID 9341149]; GO_process: GO:0042273 - ribosomal large subunit biogenesis [Evidence IMP] [PMID 17646390]; AAA family ATPase AFG2 2658016 AFG2 30037914 AFG2 Sugiyamaella lignohabitans AAA family ATPase AFG2 XP_018735058.1 2655662 D 796027 CDS AWJ20_839 30037915 complement(2663307..2665022) A 1 NC_031672.1 Putative protein with similarity to asparagine synthetases; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm; YML096W is not an essential gene and partially overlaps the verified gene RAD10; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0004066 - asparagine synthase (glutamine-hydrolyzing) activity [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006529 - asparagine biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0006541 - glutamine metabolic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; putative asparagine synthase 2665022 30037915 AWJ20_839 Sugiyamaella lignohabitans putative asparagine synthase XP_018735059.1 2663307 R 796027 CDS AWJ20_840 30037917 2665402..2667426 A 1 NC_031672.1 guanine nucleotide exchange factor VPS9 2667426 VPS9 30037917 VPS9 Sugiyamaella lignohabitans guanine nucleotide exchange factor VPS9 XP_018735060.1 2665402 D 796027 CDS AWJ20_841 30037918 2670171..2671427 A 1 NC_031672.1 Delta subunit of the coatomer complex (COPI); COPI coats Golgi-derived transport vesicles; involved in retrograde transport between Golgi and ER; GO_component: GO:0030126 - COPI vesicle coat [Evidence IEA]; GO_component: GO:0030126 - COPI vesicle coat [Evidence IMP,ISS] [PMID 8617224]; GO_component: GO:0030663 - COPI-coated vesicle membrane [Evidence IEA]; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA]; GO_component: GO:0030131 - clathrin adaptor complex [Evidence IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0031410 - cytoplasmic vesicle [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006888 - ER to Golgi vesicle-mediated transport [Evidence IMP] [PMID 8617224]; GO_process: GO:0048313 - Golgi inheritance [Evidence IGI] [PMID 18595704]; GO_process: GO:0051645 - Golgi localization [Evidence IGI] [PMID 18595704]; GO_process: GO:0006886 - intracellular protein transport [Evidence IEA]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006890 - retrograde vesicle-mediated transport, Golgi to ER [Evidence IEA]; GO_process: GO:0006890 - retrograde vesicle-mediated transport, Golgi to ER [Evidence IMP] [PMID 8617224]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IEA,IEA]; Ret2p 2671427 RET2 30037918 RET2 Sugiyamaella lignohabitans Ret2p XP_018735061.1 2670171 D 796027 CDS AWJ20_842 30037919 complement(2671616..2672926) A 1 NC_031672.1 Low-affinity cyclic AMP phosphodiesterase; controls glucose and intracellular acidification-induced cAMP signaling, target of the cAMP-protein kinase A (PKA) pathway; glucose induces transcription and inhibits translation; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0004115 - 3',5'-cyclic-AMP phosphodiesterase activity [Evidence IEA]; GO_function: GO:0004115 - 3',5'-cyclic-AMP phosphodiesterase activity [Evidence IGI,IMP] [PMID 2824992]; GO_function: GO:0004115 - 3',5'-cyclic-AMP phosphodiesterase activity [Evidence IMP] [PMID 6300049]; GO_function: GO:0004114 - 3',5'-cyclic-nucleotide phosphodiesterase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA,IEA]; GO_function: GO:0008081 - phosphoric diester hydrolase activity [Evidence IEA]; GO_process: GO:0006198 - cAMP catabolic process [Evidence IEA]; GO_process: GO:0019933 - cAMP-mediated signaling [Evidence IMP] [PMID 9880329]; 3',5'-cyclic-nucleotide phosphodiesterase PDE1 2672926 PDE1 30037919 PDE1 Sugiyamaella lignohabitans 3',5'-cyclic-nucleotide phosphodiesterase PDE1 XP_018735062.1 2671616 R 796027 CDS AWJ20_843 30037920 complement(2674174..2674554) A 1 NC_031672.1 Beta 7 subunit of the 20S proteasome; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IC] [PMID 9087403]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IC] [PMID 9087403]; GO_component: GO:0000502 - proteasome complex [Evidence IEA]; GO_component: GO:0005839 - proteasome core complex [Evidence IEA]; GO_component: GO:0019774 - proteasome core complex, beta-subunit complex [Evidence IDA] [PMID 9087403]; GO_component: GO:0034515 - proteasome storage granule [Evidence IDA] [PMID 18504300]; GO_function: GO:0004175 - endopeptidase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_function: GO:0004298 - threonine-type endopeptidase activity [Evidence IEA,IEA]; GO_process: GO:0010499 - proteasomal ubiquitin-independent protein catabolic process [Evidence IDA] [PMID 19162040]; GO_process: GO:0043248 - proteasome assembly [Evidence IGI] [PMID 17911101]; GO_process: GO:0043161 - proteasome-mediated ubiquitin-dependent protein catabolic process [Evidence IDA] [PMID 11545745]; GO_process: GO:0043161 - proteasome-mediated ubiquitin-dependent protein catabolic process [Evidence IDA] [PMID 19029916]; GO_process: GO:0006508 - proteolysis [Evidence IEA]; GO_process: GO:0051603 - proteolysis involved in cellular protein catabolic process [Evidence IEA]; proteasome core particle subunit beta 7 2674554 PRE4 30037920 PRE4 Sugiyamaella lignohabitans proteasome core particle subunit beta 7 XP_018735063.1 2674174 R 796027 CDS AWJ20_844 30037921 complement(2674872..2675153) A 1 NC_031672.1 Beta 7 subunit of the 20S proteasome; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IC] [PMID 9087403]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IC] [PMID 9087403]; GO_component: GO:0000502 - proteasome complex [Evidence IEA]; GO_component: GO:0005839 - proteasome core complex [Evidence IEA]; GO_component: GO:0019774 - proteasome core complex, beta-subunit complex [Evidence IDA] [PMID 9087403]; GO_component: GO:0034515 - proteasome storage granule [Evidence IDA] [PMID 18504300]; GO_function: GO:0004175 - endopeptidase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_function: GO:0004298 - threonine-type endopeptidase activity [Evidence IEA,IEA]; GO_process: GO:0010499 - proteasomal ubiquitin-independent protein catabolic process [Evidence IDA] [PMID 19162040]; GO_process: GO:0043248 - proteasome assembly [Evidence IGI] [PMID 17911101]; GO_process: GO:0043161 - proteasome-mediated ubiquitin-dependent protein catabolic process [Evidence IDA] [PMID 11545745]; GO_process: GO:0043161 - proteasome-mediated ubiquitin-dependent protein catabolic process [Evidence IDA] [PMID 19029916]; GO_process: GO:0006508 - proteolysis [Evidence IEA]; GO_process: GO:0051603 - proteolysis involved in cellular protein catabolic process [Evidence IEA]; proteasome core particle subunit beta 7 2675153 PRE4 30037921 PRE4 Sugiyamaella lignohabitans proteasome core particle subunit beta 7 XP_018735064.1 2674872 R 796027 CDS AWJ20_845 30037922 2675559..2677355 A 1 NC_031672.1 uncharacterized protein 2677355 30037922 AWJ20_845 Sugiyamaella lignohabitans uncharacterized protein XP_018735065.1 2675559 D 796027 CDS AWJ20_846 30037923 2677750..2679207 A 1 NC_031672.1 uncharacterized protein 2679207 30037923 AWJ20_846 Sugiyamaella lignohabitans uncharacterized protein XP_018735066.1 2677750 D 796027 CDS AWJ20_847 30037924 2679549..2680385 A 1 NC_031672.1 Formylkynurenine formamidase; involved in the de novo biosynthesis of NAD from tryptophan via kynurenine; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0004061 - arylformamidase activity [Evidence IEA,IEA,IEA]; GO_function: GO:0004061 - arylformamidase activity [Evidence IDA] [PMID 18205391]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA,IEA]; GO_process: GO:0034354 - 'de novo' NAD biosynthetic process from tryptophan [Evidence IEA]; GO_process: GO:0009435 - NAD biosynthetic process [Evidence IDA] [PMID 18205391]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0006569 - tryptophan catabolic process [Evidence IEA,IEA]; GO_process: GO:0019441 - tryptophan catabolic process to kynurenine [Evidence IEA,IEA]; arylformamidase 2680385 BNA7 30037924 BNA7 Sugiyamaella lignohabitans arylformamidase XP_018735067.1 2679549 D 796027 CDS AWJ20_848 30037925 2682121..2682402 A 1 NC_031672.1 uncharacterized protein 2682402 30037925 AWJ20_848 Sugiyamaella lignohabitans uncharacterized protein XP_018735068.1 2682121 D 796027 CDS AWJ20_849 30037926 complement(2682544..2683533) A 1 NC_031672.1 uncharacterized protein 2683533 30037926 AWJ20_849 Sugiyamaella lignohabitans uncharacterized protein XP_018735069.1 2682544 R 796027 CDS AWJ20_851 30037929 2685788..2688640 A 1 NC_031672.1 Vacuolar protein involved in vacuolar membrane fusion tethering; plays a critical role in the tethering steps of vacuolar membrane fusion by facilitating guanine nucleotide exchange on small guanosine triphosphatase Ypt7p; GO_component: GO:0030897 - HOPS complex [Evidence IPI] [PMID 10944212]; GO_component: GO:0000324 - fungal-type vacuole [Evidence IDA] [PMID 11853670]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 9111041]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0017112 - Rab guanyl-nucleotide exchange factor activity [Evidence IDA] [PMID 11062257]; GO_function: GO:0035091 - phosphatidylinositol binding [Evidence IDA] [PMID 16601699]; GO_process: GO:0006886 - intracellular protein transport [Evidence IEA]; GO_process: GO:0034727 - piecemeal microautophagy of nucleus [Evidence IMP] [PMID 18701704]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0035542 - regulation of SNARE complex assembly [Evidence IDA] [PMID 18385512]; GO_process: GO:0032889 - regulation of vacuole fusion, non-autophagic [Evidence IDA] [PMID 18385512]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0042144 - vacuole fusion, non-autophagic [Evidence IDA,IMP] [PMID 10944212]; GO_process: GO:0007033 - vacuole organization [Evidence IMP] [PMID 9111041]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IEA]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IMP] [PMID 12730205]; Vam6p 2688640 VAM6 30037929 VAM6 Sugiyamaella lignohabitans Vam6p XP_018735070.1 2685788 D 796027 CDS AWJ20_852 30037930 complement(2688701..2691466) A 1 NC_031672.1 Subunit of U3-containing 90S preribosome and SSU processome complexes; involved in production of 18S rRNA and assembly of small ribosomal subunit; synthetic defect with STI1 Hsp90 cochaperone; human homolog linked to glaucoma; Small Subunit processome is also known as SSU processome; GO_component: GO:0030686 - 90S preribosome [Evidence IDA] [PMID 12150911]; GO_component: GO:0034388 - Pwp2p-containing subcomplex of 90S preribosome [Evidence IDA] [PMID 15231838]; GO_component: GO:0034388 - Pwp2p-containing subcomplex of 90S preribosome [Evidence IDA] [PMID 17515605]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 15590835]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 22842922]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0032040 - small-subunit processome [Evidence IEA]; GO_component: GO:0032040 - small-subunit processome [Evidence IDA] [PMID 15590835]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006364 - rRNA processing [Evidence IEA,IEA]; GO_process: GO:0006364 - rRNA processing [Evidence IGI] [PMID 19150991]; GO_process: GO:0042274 - ribosomal small subunit biogenesis [Evidence IC] [PMID 15590835]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; Utp21p 2691466 UTP21 30037930 UTP21 Sugiyamaella lignohabitans Utp21p XP_018735071.1 2688701 R 796027 CDS AWJ20_853 30037931 2692099..2695260 A 1 NC_031672.1 Inositol hexakisphosphate and inositol heptakisphosphate kinase; inositol heptakisphosphate (IP7) production is important for phosphate signaling; involved in cortical actin cytoskeleton function, and invasive pseudohyphal growth analogous to S. pombe asp1; inositol hexakisphosphate is also known as IP6; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA,IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0003993 - acid phosphatase activity [Evidence IEA]; GO_function: GO:0033857 - diphosphoinositol-pentakisphosphate kinase activity [Evidence IEA]; GO_function: GO:0000829 - inositol heptakisphosphate kinase activity [Evidence IDA] [PMID 17412958]; GO_function: GO:0052723 - inositol hexakisphosphate 1-kinase activity [Evidence IEA]; GO_function: GO:0052723 - inositol hexakisphosphate 1-kinase activity [Evidence IDA] [PMID 18981179]; GO_function: GO:0052724 - inositol hexakisphosphate 3-kinase activity [Evidence IEA]; GO_function: GO:0052724 - inositol hexakisphosphate 3-kinase activity [Evidence IDA] [PMID 18981179]; GO_function: GO:0000830 - inositol hexakisphosphate 4-kinase activity [Evidence IDA] [PMID 17412958]; GO_function: GO:0000830 - inositol hexakisphosphate 4-kinase activity [Evidence IDA] [PMID 18981179]; GO_function: GO:0000832 - inositol hexakisphosphate 5-kinase activity [Evidence IEA]; GO_function: GO:0000831 - inositol hexakisphosphate 6-kinase activity [Evidence IDA] [PMID 17412958]; GO_function: GO:0000831 - inositol hexakisphosphate 6-kinase activity [Evidence IDA] [PMID 18981179]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0016311 - dephosphorylation [Evidence IEA]; GO_process: GO:0032958 - inositol phosphate biosynthetic process [Evidence IDA] [PMID 17412958]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; inositol polyphosphate kinase VIP1 2695260 VIP1 30037931 VIP1 Sugiyamaella lignohabitans inositol polyphosphate kinase VIP1 XP_018735072.1 2692099 D 796027 CDS AWJ20_854 30037932 complement(2695405..2696904) A 1 NC_031672.1 5-phospho-ribosyl-1(alpha)-pyrophosphate synthetase; synthesizes PRPP, which is required for nucleotide, histidine, and tryptophan biosynthesis; plays a key role in cell wall integrity (CWI) pathway; one of five related enzymes, which are active as heteromultimeric complexes; missense mutations in human homolog PRPS1 are associated with neuropathic Arts syndrome and Charcot-Marie Tooth (CMTX5) disease; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11101685]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000287 - magnesium ion binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0004749 - ribose phosphate diphosphokinase activity [Evidence IEA,IEA]; GO_function: GO:0004749 - ribose phosphate diphosphokinase activity [Evidence IGI] [PMID 15280369]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006015 - 5-phosphoribose 1-diphosphate biosynthetic process [Evidence IEA]; GO_process: GO:0006015 - 5-phosphoribose 1-diphosphate biosynthetic process [Evidence IMP] [PMID 10212224]; GO_process: GO:0006015 - 5-phosphoribose 1-diphosphate biosynthetic process [Evidence IGI] [PMID 15280369]; GO_process: GO:0044249 - cellular biosynthetic process [Evidence IEA]; GO_process: GO:0031505 - fungal-type cell wall organization [Evidence IPI] [PMID 15470112]; GO_process: GO:0009165 - nucleotide biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; GO_process: GO:0009156 - ribonucleoside monophosphate biosynthetic process [Evidence IEA]; ribose phosphate diphosphokinase subunit PRS1 2696904 PRS1 30037932 PRS1 Sugiyamaella lignohabitans ribose phosphate diphosphokinase subunit PRS1 XP_018735073.1 2695405 R 796027 CDS AWJ20_855 30037933 2698246..2699292 A 1 NC_031672.1 Component of the kinetochore-associated Ndc80 complex; involved in chromosome segregation, spindle checkpoint activity, and kinetochore clustering; evolutionarily conserved; other members include Ndc80p, Nuf2p, Spc24p, and Spc25p; GO_component: GO:0031262 - Ndc80 complex [Evidence IPI] [PMID 11179222]; GO_component: GO:0031262 - Ndc80 complex [Evidence IDA] [PMID 11266451]; GO_component: GO:0005694 - chromosome [Evidence IEA]; GO_component: GO:0000775 - chromosome, centromeric region [Evidence IEA,IEA]; GO_component: GO:0000777 - condensed chromosome kinetochore [Evidence IEA]; GO_component: GO:0000778 - condensed nuclear chromosome kinetochore [Evidence IDA,IMP,IPI] [PMID 11179222]; GO_component: GO:0000778 - condensed nuclear chromosome kinetochore [Evidence IDA] [PMID 11511347]; GO_component: GO:0000780 - condensed nuclear chromosome, centromeric region [Evidence IDA,IGI,IPI] [PMID 11266451]; GO_component: GO:0000776 - kinetochore [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005876 - spindle microtubule [Evidence IDA] [PMID 11266451]; GO_component: GO:0005816 - spindle pole body [Evidence IDA] [PMID 8188751]; GO_function: GO:0005200 - structural constituent of cytoskeleton [Evidence IPI] [PMID 9585415]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0007059 - chromosome segregation [Evidence IGI] [PMID 11266451]; GO_process: GO:0007020 - microtubule nucleation [Evidence IPI] [PMID 9153752]; GO_process: GO:0007067 - mitotic nuclear division [Evidence IEA,IEA]; Nuf2p 2699292 NUF2 30037933 NUF2 Sugiyamaella lignohabitans Nuf2p XP_018735074.1 2698246 D 796027 CDS AWJ20_856 30037934 2701491..2703905 A 1 NC_031672.1 uncharacterized protein 2703905 30037934 AWJ20_856 Sugiyamaella lignohabitans uncharacterized protein XP_018735075.1 2701491 D 796027 CDS AWJ20_857 30037935 complement(2704075..2705985) A 1 NC_031672.1 histone deacetylase HST1 2705985 HST1 30037935 HST1 Sugiyamaella lignohabitans histone deacetylase HST1 XP_018735076.1 2704075 R 796027 CDS AWJ20_858 30037936 2708832..2709278 A 1 NC_031672.1 Protein serine/threonine kinase; essential for cell wall remodeling during growth; localized to sites of polarized growth and the mother-daughter bud neck; homolog of the alpha, beta, and gamma isoforms of mammalian protein kinase C (PKC); GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11545731]; GO_component: GO:0005856 - cytoskeleton [Evidence IDA] [PMID 15910746]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11545731]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 16622836]; GO_component: GO:0032165 - prospore septin filament array [Evidence IDA] [PMID 24390141]; GO_component: GO:0030427 - site of polarized growth [Evidence IDA] [PMID 10893184]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0004697 - protein kinase C activity [Evidence IEA]; GO_function: GO:0004697 - protein kinase C activity [Evidence IDA] [PMID 8207005]; GO_function: GO:0004672 - protein kinase activity [Evidence IEA]; GO_function: GO:0004674 - protein serine/threonine kinase activity [Evidence IEA,IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016772 - transferase activity, transferring phosphorus-containing groups [Evidence IEA]; GO_process: GO:0007015 - actin filament organization [Evidence IGI] [PMID 12810699]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0033962 - cytoplasmic mRNA processing body assembly [Evidence IMP] [PMID 21163942]; GO_process: GO:0035556 - intracellular signal transduction [Evidence IEA]; GO_process: GO:0035556 - intracellular signal transduction [Evidence IMP] [PMID 7874200]; GO_process: GO:0030242 - peroxisome degradation [Evidence IMP] [PMID 20385774]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; GO_process: GO:0006468 - protein phosphorylation [Evidence IEA]; GO_process: GO:0006468 - protein phosphorylation [Evidence IDA] [PMID 8207005]; GO_process: GO:0060237 - regulation of fungal-type cell wall organization [Evidence IMP] [PMID 7874200]; GO_process: GO:0060211 - regulation of nuclear-transcribed mRNA poly(A) tail shortening [Evidence IMP] [PMID 21163942]; GO_process: GO:0007165 - signal transduction [Evidence IEA]; GO_process: GO:0007165 - signal transduction [Evidence IMP] [PMID 7874200]; protein kinase C 2709278 PKC1 30037936 PKC1 Sugiyamaella lignohabitans protein kinase C XP_018735077.1 2708832 D 796027 CDS AWJ20_859 30037937 2709386..2712595 A 1 NC_031672.1 Protein serine/threonine kinase; essential for cell wall remodeling during growth; localized to sites of polarized growth and the mother-daughter bud neck; homolog of the alpha, beta, and gamma isoforms of mammalian protein kinase C (PKC); GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11545731]; GO_component: GO:0005856 - cytoskeleton [Evidence IDA] [PMID 15910746]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11545731]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 16622836]; GO_component: GO:0032165 - prospore septin filament array [Evidence IDA] [PMID 24390141]; GO_component: GO:0030427 - site of polarized growth [Evidence IDA] [PMID 10893184]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0004697 - protein kinase C activity [Evidence IEA]; GO_function: GO:0004697 - protein kinase C activity [Evidence IDA] [PMID 8207005]; GO_function: GO:0004672 - protein kinase activity [Evidence IEA]; GO_function: GO:0004674 - protein serine/threonine kinase activity [Evidence IEA,IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016772 - transferase activity, transferring phosphorus-containing groups [Evidence IEA]; GO_process: GO:0007015 - actin filament organization [Evidence IGI] [PMID 12810699]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0033962 - cytoplasmic mRNA processing body assembly [Evidence IMP] [PMID 21163942]; GO_process: GO:0035556 - intracellular signal transduction [Evidence IEA]; GO_process: GO:0035556 - intracellular signal transduction [Evidence IMP] [PMID 7874200]; GO_process: GO:0030242 - peroxisome degradation [Evidence IMP] [PMID 20385774]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; GO_process: GO:0006468 - protein phosphorylation [Evidence IEA]; GO_process: GO:0006468 - protein phosphorylation [Evidence IDA] [PMID 8207005]; GO_process: GO:0060237 - regulation of fungal-type cell wall organization [Evidence IMP] [PMID 7874200]; GO_process: GO:0060211 - regulation of nuclear-transcribed mRNA poly(A) tail shortening [Evidence IMP] [PMID 21163942]; GO_process: GO:0007165 - signal transduction [Evidence IEA]; GO_process: GO:0007165 - signal transduction [Evidence IMP] [PMID 7874200]; protein kinase C 2712595 PKC1 30037937 PKC1 Sugiyamaella lignohabitans protein kinase C XP_018735078.1 2709386 D 796027 CDS AWJ20_860 30037939 2713287..2714633 A 1 NC_031672.1 Aspartic protease; member of the yapsin family of proteases involved in cell wall growth and maintenance; attached to the plasma membrane via a glycosylphosphatidylinositol (GPI) anchor; GO_component: GO:0031225 - anchored component of membrane [Evidence IEA]; GO_component: GO:0046658 - anchored component of plasma membrane [Evidence IDA,IPI] [PMID 11016834]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_function: GO:0004190 - aspartic-type endopeptidase activity [Evidence IEA,IEA]; GO_function: GO:0004190 - aspartic-type endopeptidase activity [Evidence IDA,ISS] [PMID 10191273]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_process: GO:0031505 - fungal-type cell wall organization [Evidence IGI] [PMID 16087741]; GO_process: GO:0006508 - proteolysis [Evidence IEA,IEA]; Yps3p 2714633 YPS3 30037939 YPS3 Sugiyamaella lignohabitans Yps3p XP_018735079.1 2713287 D 796027 CDS AWJ20_861 30037940 2717777..2724034 A 1 NC_031672.1 Beta subunit of fatty acid synthetase; complex catalyzes the synthesis of long-chain saturated fatty acids; contains acetyltransacylase, dehydratase, enoyl reductase, malonyl transacylase, and palmitoyl transacylase activities; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 6025308]; GO_component: GO:0005835 - fatty acid synthase complex [Evidence IEA]; GO_component: GO:0005835 - fatty acid synthase complex [Evidence IDA] [PMID 65153]; GO_component: GO:0005811 - lipid particle [Evidence IDA] [PMID 17803462]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0019171 - 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity [Evidence IEA]; GO_function: GO:0019171 - 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity [Evidence IMP] [PMID 1100391]; GO_function: GO:0019171 - 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity [Evidence IDA] [PMID 374077]; GO_function: GO:0047451 - 3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity [Evidence IEA]; GO_function: GO:0004313 - [acyl-carrier-protein] S-acetyltransferase activity [Evidence IEA]; GO_function: GO:0004313 - [acyl-carrier-protein] S-acetyltransferase activity [Evidence IMP] [PMID 1100391]; GO_function: GO:0004313 - [acyl-carrier-protein] S-acetyltransferase activity [Evidence IDA] [PMID 374077]; GO_function: GO:0004314 - [acyl-carrier-protein] S-malonyltransferase activity [Evidence IEA]; GO_function: GO:0004314 - [acyl-carrier-protein] S-malonyltransferase activity [Evidence IMP] [PMID 1100391]; GO_function: GO:0004314 - [acyl-carrier-protein] S-malonyltransferase activity [Evidence IDA] [PMID 365179]; GO_function: GO:0004314 - [acyl-carrier-protein] S-malonyltransferase activity [Evidence IDA] [PMID 374077]; GO_function: GO:0016297 - acyl-[acyl-carrier-protein] hydrolase activity [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0004318 - enoyl-[acyl-carrier-protein] reductase (NADH) activity [Evidence IEA,IEA]; GO_function: GO:0004319 - enoyl-[acyl-carrier-protein] reductase (NADPH, B-specific) activity [Evidence IMP] [PMID 1100391]; GO_function: GO:0004319 - enoyl-[acyl-carrier-protein] reductase (NADPH, B-specific) activity [Evidence IDA] [PMID 374077]; GO_function: GO:0004312 - fatty acid synthase activity [Evidence IEA]; GO_function: GO:0004312 - fatty acid synthase activity [Evidence IMP] [PMID 1100391]; GO_function: GO:0004312 - fatty acid synthase activity [Evidence IMP] [PMID 65153]; GO_function: GO:0004321 - fatty-acyl-CoA synthase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016829 - lyase activity [Evidence IEA]; GO_function: GO:0016295 - myristoyl-[acyl-carrier-protein] hydrolase activity [Evidence IEA]; GO_function: GO:0004320 - oleoyl-[acyl-carrier-protein] hydrolase activity [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0016296 - palmitoyl-[acyl-carrier-protein] hydrolase activity [Evidence IEA]; GO_function: GO:0016409 - palmitoyltransferase activity [Evidence IMP] [PMID 1100391]; GO_function: GO:0016409 - palmitoyltransferase activity [Evidence IDA] [PMID 365179]; GO_function: GO:0016740 - transferase activity [Evidence IEA,IEA]; GO_process: GO:0006633 - fatty acid biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0006631 - fatty acid metabolic process [Evidence IEA]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0042759 - long-chain fatty acid biosynthetic process [Evidence IMP] [PMID 1735446]; GO_process: GO:0042759 - long-chain fatty acid biosynthetic process [Evidence IMP] [PMID 4127627]; GO_process: GO:0008152 - metabolic process [Evidence IEA,IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; tetrafunctional fatty acid synthase subunit FAS1 2724034 FAS1 30037940 FAS1 Sugiyamaella lignohabitans tetrafunctional fatty acid synthase subunit FAS1 XP_018735080.1 2717777 D 796027 CDS AWJ20_862 30037941 complement(2724178..2724909) A 1 NC_031672.1 Protein involved in microtubule-related processes; GFP-fusion protein localizes to the cytoplasm and is induced in response to the DNA-damaging agent MMS; YLR412W is not an essential gene; similar to Arabidopsis SRR1 gene; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA,IEA]; GO_component: GO:0005874 - microtubule [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0007017 - microtubule-based process [Evidence IMP] [PMID 18064466]; Ber1p 2724909 BER1 30037941 BER1 Sugiyamaella lignohabitans Ber1p XP_018735081.1 2724178 R 796027 CDS AWJ20_863 30037942 2725144..2725563 A 1 NC_031672.1 Histone H3; core histone protein required for chromatin assembly, part of heterochromatin-mediated telomeric and HM silencing; one of two identical histone H3 proteins (see HHT2); regulated by acetylation, methylation, and phosphorylation; H3K14 acetylation plays an important role in the unfolding of strongly positioned nucleosomes during repair of UV damage; GO_component: GO:0043505 - centromere-specific nucleosome [Evidence IDA] [PMID 22693454]; GO_component: GO:0005694 - chromosome [Evidence IEA,IEA]; GO_component: GO:0000788 - nuclear nucleosome [Evidence TAS] [PMID 2275823]; GO_component: GO:0000786 - nucleosome [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11914276]; GO_component: GO:0031298 - replication fork protection complex [Evidence IDA] [PMID 16531994]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0003677 - DNA binding [Evidence TAS] [PMID 2275823]; GO_function: GO:0046982 - protein heterodimerization activity [Evidence IEA]; GO_process: GO:0006281 - DNA repair [Evidence IEA]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0006333 - chromatin assembly or disassembly [Evidence TAS] [PMID 2275823]; GO_process: GO:0070911 - global genome nucleotide-excision repair [Evidence IMP] [PMID 21460225]; GO_process: GO:0007094 - mitotic spindle assembly checkpoint [Evidence IGI] [PMID 19917722]; GO_process: GO:0006334 - nucleosome assembly [Evidence IEA]; GO_process: GO:0009303 - rRNA transcription [Evidence IMP] [PMID 16002464]; GO_process: GO:0043935 - sexual sporulation resulting in formation of a cellular spore [Evidence IMP] [PMID 20713519]; histone H3 2725563 HHT2 30037942 HHT2 Sugiyamaella lignohabitans histone H3 XP_018735082.1 2725144 D 796027 CDS AWJ20_864 30037943 complement(2725787..2727226) A 1 NC_031672.1 protein kinase PKP1 2727226 PKP1 30037943 PKP1 Sugiyamaella lignohabitans protein kinase PKP1 XP_018735083.1 2725787 R 796027 CDS AWJ20_865 30037944 complement(2728462..2731725) A 1 NC_031672.1 AAA-peroxin; heterodimerizes with AAA-peroxin Pex6p and participates in the recycling of peroxisomal signal receptor Pex5p from the peroxisomal membrane to the cystosol; induced by oleic acid and upregulated during anaerobiosis; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005778 - peroxisomal membrane [Evidence IEA,IEA]; GO_component: GO:0005778 - peroxisomal membrane [Evidence IDA] [PMID 16911527]; GO_component: GO:0005777 - peroxisome [Evidence IEA,IEA]; GO_component: GO:0005777 - peroxisome [Evidence IDA] [PMID 14562095]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016887 - ATPase activity [Evidence IMP] [PMID 15634331]; GO_function: GO:0016887 - ATPase activity [Evidence ISS] [PMID 1825027]; GO_function: GO:0042623 - ATPase activity, coupled [Evidence IEA]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_function: GO:0046982 - protein heterodimerization activity [Evidence IMP,IPI] [PMID 15634331]; GO_function: GO:0046982 - protein heterodimerization activity [Evidence IPI] [PMID 16007078]; GO_function: GO:0046982 - protein heterodimerization activity [Evidence IPI] [PMID 16911527]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0007031 - peroxisome organization [Evidence IEA,IEA]; GO_process: GO:0016562 - protein import into peroxisome matrix, receptor recycling [Evidence IDA,IGI,IMP] [PMID 16007078]; GO_process: GO:0006625 - protein targeting to peroxisome [Evidence IEA]; AAA family ATPase peroxin 1 2731725 PEX1 30037944 PEX1 Sugiyamaella lignohabitans AAA family ATPase peroxin 1 XP_018735084.1 2728462 R 796027 CDS AWJ20_866 30037945 2733079..2734290 A 1 NC_031672.1 Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is processed to make a nucleocapsid-like protein (Gag), reverse transcriptase (RT), protease (PR), and integrase (IN); similar to retroviral genes; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9448009]; GO_component: GO:0000943 - retrotransposon nucleocapsid [Evidence ISS] [PMID 9582191]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA,IEA]; GO_function: GO:0003887 - DNA-directed DNA polymerase activity [Evidence ISS] [PMID 9582191]; GO_function: GO:0003723 - RNA binding [Evidence IEA,IEA]; GO_function: GO:0003723 - RNA binding [Evidence ISS] [PMID 9582191]; GO_function: GO:0004523 - RNA-DNA hybrid ribonuclease activity [Evidence IEA]; GO_function: GO:0003964 - RNA-directed DNA polymerase activity [Evidence IEA,IEA]; GO_function: GO:0003964 - RNA-directed DNA polymerase activity [Evidence ISS] [PMID 9582191]; GO_function: GO:0004190 - aspartic-type endopeptidase activity [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0004519 - endonuclease activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004518 - nuclease activity [Evidence IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016779 - nucleotidyltransferase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence ISS] [PMID 9582191]; GO_function: GO:0004540 - ribonuclease activity [Evidence ISS] [PMID 9582191]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0015074 - DNA integration [Evidence IEA,IEA]; GO_process: GO:0006310 - DNA recombination [Evidence IEA]; GO_process: GO:0006261 - DNA-dependent DNA replication [Evidence IEA,IEA]; GO_process: GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic [Evidence IEA]; GO_process: GO:0006278 - RNA-dependent DNA replication [Evidence IEA,IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0090305 - nucleic acid phosphodiester bond hydrolysis [Evidence IEA]; GO_process: GO:0006508 - proteolysis [Evidence IEA]; GO_process: GO:0032196 - transposition [Evidence IEA]; GO_process: GO:0032197 - transposition, RNA-mediated [Evidence ISS] [PMID 9582191]; GO_process: GO:0019076 - viral release from host cell [Evidence IEA]; gag-pol fusion protein 2734290 30037945 AWJ20_866 Sugiyamaella lignohabitans gag-pol fusion protein XP_018735085.1 2733079 D 796027 CDS AWJ20_868 30037947 complement(2737559..2739625) A 1 NC_031672.1 Phosphatidylinositol-4-phosphate 5-kinase; involved in actin cytoskeleton organization and cell morphogenesis; multicopy suppressor of stt4 mutation; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9624177]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 9624177]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IEA]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IDA] [PMID 9624177]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IDA] [PMID 9624178]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016307 - phosphatidylinositol phosphate kinase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0031321 - ascospore-type prospore assembly [Evidence IGI] [PMID 19502581]; GO_process: GO:0046488 - phosphatidylinositol metabolic process [Evidence IEA]; GO_process: GO:0046854 - phosphatidylinositol phosphorylation [Evidence IDA] [PMID 9624177]; GO_process: GO:0046854 - phosphatidylinositol phosphorylation [Evidence IDA] [PMID 9624178]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; 1-phosphatidylinositol-4-phosphate 5-kinase 2739625 MSS4 30037947 MSS4 Sugiyamaella lignohabitans 1-phosphatidylinositol-4-phosphate 5-kinase XP_018735086.1 2737559 R 796027 CDS AWJ20_869 30037948 complement(2741011..2742597) A 1 NC_031672.1 Phosphatidylinositol-4-phosphate 5-kinase; involved in actin cytoskeleton organization and cell morphogenesis; multicopy suppressor of stt4 mutation; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9624177]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 9624177]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IEA]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IDA] [PMID 9624177]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IDA] [PMID 9624178]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016307 - phosphatidylinositol phosphate kinase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0031321 - ascospore-type prospore assembly [Evidence IGI] [PMID 19502581]; GO_process: GO:0046488 - phosphatidylinositol metabolic process [Evidence IEA]; GO_process: GO:0046854 - phosphatidylinositol phosphorylation [Evidence IDA] [PMID 9624177]; GO_process: GO:0046854 - phosphatidylinositol phosphorylation [Evidence IDA] [PMID 9624178]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; 1-phosphatidylinositol-4-phosphate 5-kinase 2742597 MSS4 30037948 MSS4 Sugiyamaella lignohabitans 1-phosphatidylinositol-4-phosphate 5-kinase XP_018735087.1 2741011 R 796027 CDS AWJ20_870 30037950 2748430..2752413 A 1 NC_031672.1 RNA polymerase III largest subunit C160; part of core enzyme; similar to bacterial beta-prime subunit and to RPA190 and RPO21; GO_component: GO:0005666 - DNA-directed RNA polymerase III complex [Evidence IDA] [PMID 10611227]; GO_component: GO:0005666 - DNA-directed RNA polymerase III complex [Evidence IDA] [PMID 3905793]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0003899 - DNA-directed RNA polymerase activity [Evidence IEA,IEA,IEA]; GO_function: GO:0001056 - RNA polymerase III activity [Evidence IDA] [PMID 3905793]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016779 - nucleotidyltransferase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0042797 - tRNA transcription from RNA polymerase III promoter [Evidence IDA] [PMID 3905793]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; DNA-directed RNA polymerase III core subunit RPO31 2752413 RPO31 30037950 RPO31 Sugiyamaella lignohabitans DNA-directed RNA polymerase III core subunit RPO31 XP_018735088.1 2748430 D 796027 CDS AWJ20_871 30037951 complement(2752795..2753688) A 1 NC_031672.1 uncharacterized protein 2753688 30037951 AWJ20_871 Sugiyamaella lignohabitans uncharacterized protein XP_018735089.1 2752795 R 796027 CDS AWJ20_872 30037952 complement(2759039..2762095) A 1 NC_031672.1 Subunit of the HIR complex; HIR is a nucleosome assembly complex involved in regulation of histone gene transcription; contributes to nucleosome formation, heterochromatic gene silencing, and formation of functional kinetochores; GO_component: GO:0000417 - HIR complex [Evidence IDA,IPI] [PMID 16264190]; GO_component: GO:0000417 - HIR complex [Evidence IDA] [PMID 16303565]; GO_component: GO:0005694 - chromosome [Evidence IEA]; GO_component: GO:0000775 - chromosome, centromeric region [Evidence IEA,IEA]; GO_component: GO:0000775 - chromosome, centromeric region [Evidence IDA] [PMID 11782447]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IPI] [PMID 9504914]; GO_function: GO:0003677 - DNA binding [Evidence IDA] [PMID 16264190]; GO_function: GO:0003682 - chromatin binding [Evidence IEA]; GO_function: GO:0031491 - nucleosome binding [Evidence IMP] [PMID 16264190]; GO_function: GO:0003714 - transcription corepressor activity [Evidence IDA] [PMID 9001207]; GO_process: GO:0006336 - DNA replication-independent nucleosome assembly [Evidence IDA] [PMID 16264190]; GO_process: GO:0006336 - DNA replication-independent nucleosome assembly [Evidence IDA] [PMID 16303565]; GO_process: GO:0016568 - chromatin modification [Evidence IEA,IEA]; GO_process: GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence IDA] [PMID 9001207]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA,IEA]; GO_process: GO:0006368 - transcription elongation from RNA polymerase II promoter [Evidence IGI] [PMID 16449659]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Hir1p 2762095 HIR1 30037952 HIR1 Sugiyamaella lignohabitans Hir1p XP_018735090.1 2759039 R 796027 CDS AWJ20_873 30037953 complement(2763322..2765091) A 1 NC_031672.1 Vacuolar carboxypeptidase S; expression is induced under low-nitrogen conditions; GO_component: GO:0000328 - fungal-type vacuole lumen [Evidence IDA] [PMID 1569061]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0004180 - carboxypeptidase activity [Evidence IEA]; GO_function: GO:0004180 - carboxypeptidase activity [Evidence IMP] [PMID 2026161]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA,IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004181 - metallocarboxypeptidase activity [Evidence IEA]; GO_function: GO:0008237 - metallopeptidase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0006807 - nitrogen compound metabolic process [Evidence IMP] [PMID 2026161]; GO_process: GO:0006508 - proteolysis [Evidence IEA,IEA]; GO_process: GO:0051603 - proteolysis involved in cellular protein catabolic process [Evidence IMP] [PMID 2026161]; Cps1p 2765091 CPS1 30037953 CPS1 Sugiyamaella lignohabitans Cps1p XP_018735091.1 2763322 R 796027 CDS AWJ20_874 30037954 2769968..2771779 A 1 NC_031672.1 Phosphatidylinositol-4-phosphate 5-kinase; involved in actin cytoskeleton organization and cell morphogenesis; multicopy suppressor of stt4 mutation; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9624177]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 9624177]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IEA]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IDA] [PMID 9624177]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IDA] [PMID 9624178]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016307 - phosphatidylinositol phosphate kinase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0031321 - ascospore-type prospore assembly [Evidence IGI] [PMID 19502581]; GO_process: GO:0046488 - phosphatidylinositol metabolic process [Evidence IEA]; GO_process: GO:0046854 - phosphatidylinositol phosphorylation [Evidence IDA] [PMID 9624177]; GO_process: GO:0046854 - phosphatidylinositol phosphorylation [Evidence IDA] [PMID 9624178]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; 1-phosphatidylinositol-4-phosphate 5-kinase 2771779 MSS4 30037954 MSS4 Sugiyamaella lignohabitans 1-phosphatidylinositol-4-phosphate 5-kinase XP_018735092.1 2769968 D 796027 CDS AWJ20_875 30037955 2774026..2775534 A 1 NC_031672.1 serine/threonine protein kinase YAK1 2775534 YAK1 30037955 YAK1 Sugiyamaella lignohabitans serine/threonine protein kinase YAK1 XP_018735093.1 2774026 D 796027 CDS AWJ20_876 30037956 complement(2775750..2776106) A 1 NC_031672.1 Mitochondrial ribosomal protein of the large subunit; GO_component: GO:0005762 - mitochondrial large ribosomal subunit [Evidence IPI] [PMID 12392552]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IPI] [PMID 12392552]; GO_process: GO:0009060 - aerobic respiration [Evidence IMP] [PMID 12392552]; GO_process: GO:0032543 - mitochondrial translation [Evidence IC] [PMID 12392552]; mitochondrial 54S ribosomal protein MRPL51 2776106 MRPL51 30037956 MRPL51 Sugiyamaella lignohabitans mitochondrial 54S ribosomal protein MRPL51 XP_018735094.1 2775750 R 796027 CDS AWJ20_877 30037957 2776984..2777634 A 1 NC_031672.1 Uncharacterized protein C3orf60-like protein 2777634 30037957 AWJ20_877 Sugiyamaella lignohabitans Uncharacterized protein C3orf60-like protein XP_018735095.1 2776984 D 796027 CDS AWJ20_878 30037958 2778074..2780404 A 1 NC_031672.1 uncharacterized protein 2780404 30037958 AWJ20_878 Sugiyamaella lignohabitans uncharacterized protein XP_018735096.1 2778074 D 796027 CDS AWJ20_879 30037959 complement(2780703..2782634) A 1 NC_031672.1 FG-nucleoporin ASM4 2782634 ASM4 30037959 ASM4 Sugiyamaella lignohabitans FG-nucleoporin ASM4 XP_018735097.1 2780703 R 796027 CDS AWJ20_880 30037961 2783198..2784541 A 1 NC_031672.1 Essential, non-ATPase regulatory subunit of the 26S proteasome lid; required for the assembly and activity of the 26S proteasome; the human homolog (S9 protein) partially rescues Rpn6p depletion; protein abundance increases in response to DNA replication stress; GO_component: GO:0000502 - proteasome complex [Evidence IEA]; GO_component: GO:0008541 - proteasome regulatory particle, lid subcomplex [Evidence IDA] [PMID 9741626]; GO_component: GO:0034515 - proteasome storage granule [Evidence IDA] [PMID 18504300]; GO_function: GO:0005198 - structural molecule activity [Evidence IMP] [PMID 12486135]; GO_process: GO:0043248 - proteasome assembly [Evidence IMP] [PMID 12486135]; GO_process: GO:0006511 - ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 12486135]; proteasome regulatory particle lid subunit RPN6 2784541 RPN6 30037961 RPN6 Sugiyamaella lignohabitans proteasome regulatory particle lid subunit RPN6 XP_018735098.1 2783198 D 796027 CDS AWJ20_881 30037962 2785250..2787031 A 1 NC_031672.1 transcription factor, zf-fungal binuclear cluster type (predicted) 2787031 30037962 AWJ20_881 Sugiyamaella lignohabitans transcription factor, zf-fungal binuclear cluster type (predicted) XP_018735099.1 2785250 D 796027 CDS AWJ20_882 30037963 complement(2788053..2789204) A 1 NC_031672.1 top hit is XP_002839470.1 originated in Tuber melanosporum Mel28; conserved fungal protein; uncharacterized protein 2789204 tam14 30037963 tam14 Sugiyamaella lignohabitans uncharacterized protein XP_018735100.1 2788053 R 796027 CDS AWJ20_883 30037964 complement(2791193..2793037) A 1 NC_031672.1 Phosphatidylinositol-4-phosphate 5-kinase; involved in actin cytoskeleton organization and cell morphogenesis; multicopy suppressor of stt4 mutation; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9624177]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 9624177]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IEA]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IDA] [PMID 9624177]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IDA] [PMID 9624178]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016307 - phosphatidylinositol phosphate kinase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0031321 - ascospore-type prospore assembly [Evidence IGI] [PMID 19502581]; GO_process: GO:0046488 - phosphatidylinositol metabolic process [Evidence IEA]; GO_process: GO:0046854 - phosphatidylinositol phosphorylation [Evidence IDA] [PMID 9624177]; GO_process: GO:0046854 - phosphatidylinositol phosphorylation [Evidence IDA] [PMID 9624178]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; 1-phosphatidylinositol-4-phosphate 5-kinase 2793037 MSS4 30037964 MSS4 Sugiyamaella lignohabitans 1-phosphatidylinositol-4-phosphate 5-kinase XP_018735101.1 2791193 R 796027 CDS AWJ20_885 30037966 complement(2799541..2800722) A 1 NC_031672.1 E1 beta subunit of the pyruvate dehydrogenase (PDH) complex; PDH is an evolutionarily conserved multi-protein complex found in mitochondria; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA]; GO_component: GO:0042645 - mitochondrial nucleoid [Evidence IDA] [PMID 15692048]; GO_component: GO:0005967 - mitochondrial pyruvate dehydrogenase complex [Evidence IDA] [PMID 2007123]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IMP] [PMID 8433986]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0004739 - pyruvate dehydrogenase (acetyl-transferring) activity [Evidence IEA]; GO_function: GO:0004739 - pyruvate dehydrogenase (acetyl-transferring) activity [Evidence IMP] [PMID 8433986]; GO_process: GO:0006086 - acetyl-CoA biosynthetic process from pyruvate [Evidence IDA] [PMID 7947791]; GO_process: GO:0006096 - glycolytic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; pyruvate dehydrogenase (acetyl-transferring) subunit E1 beta 2800722 PDB1 30037966 PDB1 Sugiyamaella lignohabitans pyruvate dehydrogenase (acetyl-transferring) subunit E1 beta XP_018735102.1 2799541 R 796027 CDS AWJ20_886 30037967 complement(2802332..2804326) A 1 NC_031672.1 Calpain-like cysteine protease; involved in proteolytic activation of Rim101p in response to alkaline pH; localizes to punctate structures in alkaline conditions and in vps4 mutant; has similarity to A. nidulans palB; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_function: GO:0004198 - calcium-dependent cysteine-type endopeptidase activity [Evidence IEA]; GO_function: GO:0004197 - cysteine-type endopeptidase activity [Evidence IDA] [PMID 9928935]; GO_function: GO:0008234 - cysteine-type peptidase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_process: GO:0016485 - protein processing [Evidence IGI,IMP] [PMID 9928935]; GO_process: GO:0006508 - proteolysis [Evidence IEA,IEA]; Rim13p 2804326 RIM13 30037967 RIM13 Sugiyamaella lignohabitans Rim13p XP_018735103.1 2802332 R 796027 CDS AWJ20_887 30037968 2805414..2806652 A 1 NC_031672.1 Beta subunit of the CAAX farnesyltransferase (FTase); this complex prenylates the a-factor mating pheromone and Ras proteins; required for the membrane localization of Ras proteins and a-factor; homolog of the mammalian FTase beta subunit; GO_component: GO:0005965 - protein farnesyltransferase complex [Evidence IEA]; GO_component: GO:0005965 - protein farnesyltransferase complex [Evidence IDA] [PMID 8424764]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004659 - prenyltransferase activity [Evidence IEA]; GO_function: GO:0004660 - protein farnesyltransferase activity [Evidence IEA]; GO_function: GO:0004660 - protein farnesyltransferase activity [Evidence IDA] [PMID 9380709]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0018343 - protein farnesylation [Evidence IEA]; GO_process: GO:0018343 - protein farnesylation [Evidence IDA] [PMID 1763050]; GO_process: GO:0042127 - regulation of cell proliferation [Evidence IEA]; protein farnesyltransferase 2806652 RAM1 30037968 RAM1 Sugiyamaella lignohabitans protein farnesyltransferase XP_018735104.1 2805414 D 796027 CDS AWJ20_888 30037969 2809099..2810691 A 1 NC_031672.1 BTB/POZ domain protein Btb2 2810691 btb2 30037969 btb2 Sugiyamaella lignohabitans BTB/POZ domain protein Btb2 XP_018735105.1 2809099 D 796027 CDS AWJ20_889 30037970 complement(2811392..2812390) A 1 NC_031672.1 General splicing factor; required for stable U2 snRNP binding to primary transcripts; essential for the first step of splicing; component of the pre-catalytic spliceosome complex containing Cef1p; similar to S. pombe Cwf24p; GO_component: GO:0005684 - U2-type spliceosomal complex [Evidence IDA] [PMID 11884590]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 17974558]; GO_component: GO:0005681 - spliceosomal complex [Evidence IEA]; GO_component: GO:0005681 - spliceosomal complex [Evidence IPI] [PMID 23029180]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA,IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0008380 - RNA splicing [Evidence IEA]; GO_process: GO:0000349 - generation of catalytic spliceosome for first transesterification step [Evidence IMP] [PMID 22535589]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0000398 - mRNA splicing, via spliceosome [Evidence IMP] [PMID 23029180]; GO_process: GO:0034247 - snoRNA splicing [Evidence IMP] [PMID 17974558]; GO_process: GO:0034247 - snoRNA splicing [Evidence IMP] [PMID 23029180]; Cwc24p 2812390 CWC24 30037970 CWC24 Sugiyamaella lignohabitans Cwc24p XP_018735106.1 2811392 R 796027 CDS AWJ20_890 30037972 2812886..2814211 A 1 NC_031672.1 ATPase of the 19S regulatory particle of the 26S proteasome; one of six ATPases of the regulatory particle; involved in the degradation of ubiquitinated substrates; recruited to the GAL1-10 promoter region upon induction of transcription; similar to human TBP1; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0000502 - proteasome complex [Evidence IEA]; GO_component: GO:0008540 - proteasome regulatory particle, base subcomplex [Evidence IDA] [PMID 11742986]; GO_component: GO:0008540 - proteasome regulatory particle, base subcomplex [Evidence IDA] [PMID 9741626]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016887 - ATPase activity [Evidence ISS] [PMID 9584156]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_process: GO:0045899 - positive regulation of RNA polymerase II transcriptional preinitiation complex assembly [Evidence IMP] [PMID 19843524]; GO_process: GO:0070682 - proteasome regulatory particle assembly [Evidence IMP] [PMID 19412160]; GO_process: GO:0030163 - protein catabolic process [Evidence IEA]; GO_process: GO:0006511 - ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 9724628]; proteasome regulatory particle base subunit RPT5 2814211 RPT5 30037972 RPT5 Sugiyamaella lignohabitans proteasome regulatory particle base subunit RPT5 XP_018735107.1 2812886 D 796027 CDS AWJ20_891 30037973 complement(2813653..2813985) A 1 NC_031672.1 uncharacterized protein 2813985 30037973 AWJ20_891 Sugiyamaella lignohabitans uncharacterized protein XP_018735108.1 2813653 R 796027 CDS AWJ20_892 30037974 complement(2814437..2816248) A 1 NC_031672.1 Pre-mRNA splicing factor; important for catalytic step II of pre-mRNA splicing and plays a role in cell cycle progression; required for DNA synthesis during mitosis and meiosis; has WD repeats; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005681 - spliceosomal complex [Evidence IEA]; GO_component: GO:0005681 - spliceosomal complex [Evidence IDA] [PMID 9769104]; GO_function: GO:0000386 - second spliceosomal transesterification activity [Evidence IGI,IMP] [PMID 10999606]; GO_process: GO:0000082 - G1/S transition of mitotic cell cycle [Evidence IMP] [PMID 17171376]; GO_process: GO:0008380 - RNA splicing [Evidence IEA]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0000350 - generation of catalytic spliceosome for second transesterification step [Evidence IGI,IMP] [PMID 10999606]; GO_process: GO:0000389 - mRNA 3'-splice site recognition [Evidence IGI] [PMID 10628969]; GO_process: GO:0000389 - mRNA 3'-splice site recognition [Evidence IGI] [PMID 15133121]; GO_process: GO:0000348 - mRNA branch site recognition [Evidence IGI] [PMID 15133121]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; Cdc40p 2816248 CDC40 30037974 CDC40 Sugiyamaella lignohabitans Cdc40p XP_018735109.1 2814437 R 796027 CDS AWJ20_893 30037975 2816722..2817498 A 1 NC_031672.1 Essential protein involved in nuclear export of Mss4p; Mss4p is a lipid kinase that generates phosphatidylinositol 4,5-biphosphate and plays a role in actin cytoskeleton organization and vesicular transport; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006611 - protein export from nucleus [Evidence IMP] [PMID 12912920]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0000055 - ribosomal large subunit export from nucleus [Evidence IMP] [PMID 12912920]; GO_process: GO:0006810 - transport [Evidence IEA]; Bcp1p 2817498 BCP1 30037975 BCP1 Sugiyamaella lignohabitans Bcp1p XP_018735110.1 2816722 D 796027 CDS AWJ20_894 30037976 2818562..2819944 A 1 NC_031672.1 Peroxisomal integral membrane protein; involved in negative regulation of peroxisome number; partially functionally redundant with Pex31p; genetic interactions suggest action at a step downstream of steps mediated by Pex28p and Pex29p; PEX30 has a paralog, PEX31, that arose from the whole genome duplication; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0005779 - integral component of peroxisomal membrane [Evidence IDA] [PMID 14617799]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005778 - peroxisomal membrane [Evidence IEA]; GO_component: GO:0005777 - peroxisome [Evidence IEA]; GO_component: GO:0005777 - peroxisome [Evidence IDA] [PMID 14562095]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0007031 - peroxisome organization [Evidence IMP] [PMID 14617799]; Pex30p 2819944 PEX30 30037976 PEX30 Sugiyamaella lignohabitans Pex30p XP_018735111.1 2818562 D 796027 CDS AWJ20_895 30037977 2824533..2825576 A 1 NC_031672.1 uncharacterized protein 2825576 30037977 AWJ20_895 Sugiyamaella lignohabitans uncharacterized protein XP_018735112.1 2824533 D 796027 CDS AWJ20_896 30037978 2838359..2841094 A 1 NC_031672.1 Membrane protein required for translocation of Man5GlcNac2-PP-Dol; required for translocation of Man5GlcNac2-PP-Dol from the cytoplasmic side to the lumenal side of the ER membrane but is not the flippase; mutation is suppressed by expression of human p53 protein; essential gene; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IGI,IMP] [PMID 11807558]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0034202 - glycolipid-translocating activity [Evidence IDA] [PMID 18597486]; GO_function: GO:0034202 - glycolipid-translocating activity [Evidence IDA] [PMID 18668045]; GO_function: GO:0034202 - glycolipid-translocating activity [Evidence IMP] [PMID 19494107]; GO_function: GO:0005319 - lipid transporter activity [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008643 - carbohydrate transport [Evidence IEA]; GO_process: GO:0034203 - glycolipid translocation [Evidence IGI,IMP] [PMID 11807558]; GO_process: GO:0006869 - lipid transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Rft1p 2841094 RFT1 30037978 RFT1 Sugiyamaella lignohabitans Rft1p XP_018735113.1 2838359 D 796027 CDS AWJ20_897 30037979 complement(2841332..2842618) A 1 NC_031672.1 uncharacterized protein 2842618 30037979 AWJ20_897 Sugiyamaella lignohabitans uncharacterized protein XP_018735114.1 2841332 R 796027 CDS AWJ20_898 30037980 2848612..2850462 A 1 NC_031672.1 Cytoplasmic ATPase that is a ribosome-associated molecular chaperone; functions with J-protein partner Zuo1p; may be involved in the folding of newly-synthesized polypeptide chains; member of the HSP70 family; SSB2 has a paralog, SSB1, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 16622836]; GO_component: GO:0005844 - polysome [Evidence IDA] [PMID 1394434]; GO_component: GO:0005844 - polysome [Evidence IDA] [PMID 16413483]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0016887 - ATPase activity [Evidence IDA] [PMID 9860955]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0051082 - unfolded protein binding [Evidence IDA] [PMID 9670014]; GO_process: GO:0051083 - 'de novo' cotranslational protein folding [Evidence IDA] [PMID 9670014]; GO_process: GO:0042149 - cellular response to glucose starvation [Evidence IGI] [PMID 19723765]; GO_process: GO:0002181 - cytoplasmic translation [Evidence IMP,IPI] [PMID 1394434]; GO_process: GO:0006364 - rRNA processing [Evidence IGI] [PMID 20368619]; GO_process: GO:0006450 - regulation of translational fidelity [Evidence IMP] [PMID 15456889]; GO_process: GO:0006950 - response to stress [Evidence IEA]; GO_process: GO:0000054 - ribosomal subunit export from nucleus [Evidence IGI] [PMID 20368619]; GO_process: GO:0006412 - translation [Evidence IEA]; GO_process: GO:0006452 - translational frameshifting [Evidence IMP] [PMID 16607023]; Hsp70 family ATPase SSB2 2850462 SSB2 30037980 SSB2 Sugiyamaella lignohabitans Hsp70 family ATPase SSB2 XP_018735115.1 2848612 D 796027 CDS AWJ20_899 30037981 complement(2851931..2854021) A 1 NC_031672.1 Phosphatidylinositol-4-phosphate 5-kinase; involved in actin cytoskeleton organization and cell morphogenesis; multicopy suppressor of stt4 mutation; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9624177]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 9624177]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IEA]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IDA] [PMID 9624177]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IDA] [PMID 9624178]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016307 - phosphatidylinositol phosphate kinase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0031321 - ascospore-type prospore assembly [Evidence IGI] [PMID 19502581]; GO_process: GO:0046488 - phosphatidylinositol metabolic process [Evidence IEA]; GO_process: GO:0046854 - phosphatidylinositol phosphorylation [Evidence IDA] [PMID 9624177]; GO_process: GO:0046854 - phosphatidylinositol phosphorylation [Evidence IDA] [PMID 9624178]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; 1-phosphatidylinositol-4-phosphate 5-kinase 2854021 MSS4 30037981 MSS4 Sugiyamaella lignohabitans 1-phosphatidylinositol-4-phosphate 5-kinase XP_018735116.1 2851931 R 796027 CDS AWJ20_900 30037984 complement(2854809..2857337) A 1 NC_031672.1 Protein involved in proteolytic activation of Rim101p; part of response to alkaline pH; interacts with ESCRT-1 subunits Stp22p and Vps28p; essential for anaerobic growth; member of the arrestin-related trafficking adaptor family; GO_component: GO:0009898 - cytoplasmic side of plasma membrane [Evidence IDA] [PMID 20028738]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0001403 - invasive growth in response to glucose limitation [Evidence IMP] [PMID 9017390]; GO_process: GO:0007126 - meiotic nuclear division [Evidence IMP] [PMID 9017390]; GO_process: GO:0016485 - protein processing [Evidence IMP] [PMID 9017390]; GO_process: GO:0070086 - ubiquitin-dependent endocytosis [Evidence ISA] [PMID 18976803]; Rim8p 2857337 RIM8 30037984 RIM8 Sugiyamaella lignohabitans Rim8p XP_018735117.1 2854809 R 796027 CDS AWJ20_901 30037985 2861671..2867016 A 1 NC_031672.1 Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is processed to make a nucleocapsid-like protein (Gag), reverse transcriptase (RT), protease (PR), and integrase (IN); similar to retroviral genes; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9448009]; GO_component: GO:0000943 - retrotransposon nucleocapsid [Evidence ISS] [PMID 9582191]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA,IEA]; GO_function: GO:0003887 - DNA-directed DNA polymerase activity [Evidence ISS] [PMID 9582191]; GO_function: GO:0003723 - RNA binding [Evidence IEA,IEA]; GO_function: GO:0003723 - RNA binding [Evidence ISS] [PMID 9582191]; GO_function: GO:0004523 - RNA-DNA hybrid ribonuclease activity [Evidence IEA]; GO_function: GO:0003964 - RNA-directed DNA polymerase activity [Evidence IEA,IEA]; GO_function: GO:0003964 - RNA-directed DNA polymerase activity [Evidence ISS] [PMID 9582191]; GO_function: GO:0004190 - aspartic-type endopeptidase activity [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0004519 - endonuclease activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004518 - nuclease activity [Evidence IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016779 - nucleotidyltransferase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence ISS] [PMID 9582191]; GO_function: GO:0004540 - ribonuclease activity [Evidence ISS] [PMID 9582191]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0015074 - DNA integration [Evidence IEA,IEA]; GO_process: GO:0006310 - DNA recombination [Evidence IEA]; GO_process: GO:0006261 - DNA-dependent DNA replication [Evidence IEA,IEA]; GO_process: GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic [Evidence IEA]; GO_process: GO:0006278 - RNA-dependent DNA replication [Evidence IEA,IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0090305 - nucleic acid phosphodiester bond hydrolysis [Evidence IEA]; GO_process: GO:0006508 - proteolysis [Evidence IEA]; GO_process: GO:0032196 - transposition [Evidence IEA]; GO_process: GO:0032197 - transposition, RNA-mediated [Evidence ISS] [PMID 9582191]; GO_process: GO:0019076 - viral release from host cell [Evidence IEA]; gag-pol fusion protein 2867016 30037985 AWJ20_901 Sugiyamaella lignohabitans gag-pol fusion protein XP_018735118.1 2861671 D 796027 CDS AWJ20_902 30037986 complement(2870982..2874485) A 1 NC_031672.1 Component of the RNA polymerase II mediator complex; mediator is required for transcriptional activation and also has a role in basal transcription; GO_component: GO:0016592 - mediator complex [Evidence IEA]; GO_component: GO:0016592 - mediator complex [Evidence IDA] [PMID 19368889]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9671481]; GO_function: GO:0001104 - RNA polymerase II transcription cofactor activity [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence IEA]; GO_process: GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 9671481]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IDA] [PMID 19368889]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Nut1p 2874485 NUT1 30037986 NUT1 Sugiyamaella lignohabitans Nut1p XP_018735119.1 2870982 R 796027 CDS AWJ20_903 30037987 2882107..2882619 A 1 NC_031672.1 Protein that associates with ribosomes; homolog of translationally controlled tumor protein; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm and relocates to the mitochondrial outer surface upon oxidative stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 16806052]; GO_component: GO:0005874 - microtubule [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16806052]; GO_component: GO:0005840 - ribosome [Evidence IDA] [PMID 16702403]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0034599 - cellular response to oxidative stress [Evidence IMP] [PMID 16806052]; GO_process: GO:0002181 - cytoplasmic translation [Evidence IMP] [PMID 16702403]; GO_process: GO:0006412 - translation [Evidence IEA]; Tma19p 2882619 TMA19 30037987 TMA19 Sugiyamaella lignohabitans Tma19p XP_018735120.1 2882107 D 796027 CDS AWJ20_904 30037988 complement(2882931..2884382) A 1 NC_031672.1 2'-O-methyltransferase; responsible for modification of tRNA at position 4; C-terminal domain has similarity to Rossmann-fold (RFM) superfamily of RNA methyltransferases; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0008168 - methyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0008175 - tRNA methyltransferase activity [Evidence IDA,IMP] [PMID 17242307]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0032259 - methylation [Evidence IEA]; GO_process: GO:0030488 - tRNA methylation [Evidence IDA,IMP] [PMID 17242307]; GO_process: GO:0008033 - tRNA processing [Evidence IEA,IEA]; Trm13p 2884382 TRM13 30037988 TRM13 Sugiyamaella lignohabitans Trm13p XP_018735121.1 2882931 R 796027 CDS AWJ20_906 30037990 2887936..2889684 A 1 NC_031672.1 uncharacterized protein 2889684 30037990 AWJ20_906 Sugiyamaella lignohabitans uncharacterized protein XP_018735122.1 2887936 D 796027 CDS AWJ20_908 30037992 2898304..2898984 A 1 NC_031672.1 ER associated glutathione S-transferase capable of homodimerization; expression induced during the diauxic shift and throughout stationary phase; functional overlap with Gtt2p, Grx1p, and Grx2p; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 9792709]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IDA] [PMID 16407407]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 16622836]; GO_function: GO:0004602 - glutathione peroxidase activity [Evidence IDA] [PMID 16709151]; GO_function: GO:0004364 - glutathione transferase activity [Evidence IEA]; GO_function: GO:0004364 - glutathione transferase activity [Evidence IDA,ISS] [PMID 9792709]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006749 - glutathione metabolic process [Evidence IDA] [PMID 9792709]; bifunctional glutathione transferase/peroxidase 2898984 GTT1 30037992 GTT1 Sugiyamaella lignohabitans bifunctional glutathione transferase/peroxidase XP_018735123.1 2898304 D 796027 CDS AWJ20_909 30037993 complement(2901394..2903547) A 1 NC_031672.1 GATA zinc finger protein; negatively regulates nitrogen catabolic gene expression by competing with Gat1p for GATA site binding; function requires a repressive carbon source; dimerizes with Dal80p and binds to Tor1p; GZF3 has a paralog, DAL80, that arose from the whole genome duplication; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 19380492]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19111667]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19158363]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 9171383]; GO_function: GO:0000981 - sequence-specific DNA binding RNA polymerase II transcription factor activity [Evidence IDA,IMP] [PMID 19380492]; GO_function: GO:0003700 - sequence-specific DNA binding transcription factor activity [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0051457 - maintenance of protein location in nucleus [Evidence IPI] [PMID 19380492]; GO_process: GO:0000122 - negative regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 9171383]; GO_process: GO:0090295 - nitrogen catabolite repression of transcription [Evidence IGI] [PMID 9106207]; GO_process: GO:0090295 - nitrogen catabolite repression of transcription [Evidence IMP] [PMID 9171383]; GO_process: GO:0090295 - nitrogen catabolite repression of transcription [Evidence IGI,IMP] [PMID 9171427]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA,IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Gzf3p 2903547 GZF3 30037993 GZF3 Sugiyamaella lignohabitans Gzf3p XP_018735124.1 2901394 R 796027 CDS AWJ20_910 30037995 complement(2907509..2907910) A 1 NC_031672.1 Histone H2A; core histone protein required for chromatin assembly and chromosome function; one of two nearly identical (see also HTA1) subtypes; DNA damage-dependent phosphorylation by Mec1p facilitates DNA repair; acetylated by Nat4p; GO_component: GO:0005694 - chromosome [Evidence IEA,IEA]; GO_component: GO:0000788 - nuclear nucleosome [Evidence TAS] [PMID 2275823]; GO_component: GO:0000786 - nucleosome [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0031298 - replication fork protection complex [Evidence IDA] [PMID 16531994]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0003677 - DNA binding [Evidence TAS] [PMID 2275823]; GO_function: GO:0046982 - protein heterodimerization activity [Evidence IEA]; GO_process: GO:0006281 - DNA repair [Evidence IEA]; GO_process: GO:0006281 - DNA repair [Evidence IMP] [PMID 15781691]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0006333 - chromatin assembly or disassembly [Evidence TAS] [PMID 2275823]; GO_process: GO:0006334 - nucleosome assembly [Evidence IEA]; histone H2A 2907910 HTA2 30037995 HTA2 Sugiyamaella lignohabitans histone H2A XP_018735125.1 2907509 R 796027 CDS AWJ20_911 30037996 2909231..2909644 A 1 NC_031672.1 Histone H2B; core histone protein required for chromatin assembly and chromosome function; nearly identical to HTB1; Rad6p-Bre1p-Lge1p mediated ubiquitination regulates reassembly after DNA replication, transcriptional activation, meiotic DSB formation and H3 methylation; GO_component: GO:0005694 - chromosome [Evidence IEA,IEA]; GO_component: GO:0000788 - nuclear nucleosome [Evidence TAS] [PMID 2275823]; GO_component: GO:0000786 - nucleosome [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0031298 - replication fork protection complex [Evidence IDA] [PMID 16531994]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0003677 - DNA binding [Evidence TAS] [PMID 2275823]; GO_function: GO:0046982 - protein heterodimerization activity [Evidence IEA]; GO_process: GO:0006333 - chromatin assembly or disassembly [Evidence TAS] [PMID 2275823]; GO_process: GO:0006334 - nucleosome assembly [Evidence IEA]; histone H2B 2909644 HTB1 30037996 HTB1 Sugiyamaella lignohabitans histone H2B XP_018735126.1 2909231 D 796027 CDS AWJ20_912 30037997 2911188..2912651 A 1 NC_031672.1 Component of the RSC chromatin remodeling complex; interacts with Rsc3p, Rsc30p, Ldb7p, and Htl1p to form a module important for a broad range of RSC functions; involved in nuclear protein import and maintenance of proper telomere length; GO_component: GO:0016586 - RSC complex [Evidence IDA] [PMID 10619019]; GO_component: GO:0016586 - RSC complex [Evidence IDA] [PMID 12183366]; GO_component: GO:0016586 - RSC complex [Evidence IDA] [PMID 14729968]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11914276]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0015616 - DNA translocase activity [Evidence IDA] [PMID 12183366]; GO_function: GO:0015616 - DNA translocase activity [Evidence IDA] [PMID 16455496]; GO_function: GO:0015616 - DNA translocase activity [Evidence IDA] [PMID 17188033]; GO_function: GO:0015616 - DNA translocase activity [Evidence IDA] [PMID 17918861]; GO_process: GO:0043044 - ATP-dependent chromatin remodeling [Evidence IDA] [PMID 12183366]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IMP] [PMID 12482937]; GO_process: GO:0016568 - chromatin modification [Evidence IEA]; GO_process: GO:0006338 - chromatin remodeling [Evidence IC] [PMID 14729968]; GO_process: GO:0006337 - nucleosome disassembly [Evidence IDA] [PMID 16492771]; GO_process: GO:0006606 - protein import into nucleus [Evidence IMP] [PMID 2556404]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006368 - transcription elongation from RNA polymerase II promoter [Evidence IDA] [PMID 17081996]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Npl6p 2912651 NPL6 30037997 NPL6 Sugiyamaella lignohabitans Npl6p XP_018735127.1 2911188 D 796027 CDS AWJ20_913 30037998 complement(2913573..2915816) A 1 NC_031672.1 Endoplasmic reticulum zinc transporter; part of a heterodimeric transporter with Msc2p that transfers zinc from the cytosol to the ER lumen; member of the cation diffusion facilitator family of efflux pumps; zinc-regulated directly through Zap1p; transcription induced under conditions of zinc deficiency; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 14562095]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 15961382]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0008324 - cation transmembrane transporter activity [Evidence IEA]; GO_function: GO:0046873 - metal ion transmembrane transporter activity [Evidence ISS] [PMID 15961382]; GO_function: GO:0005385 - zinc ion transmembrane transporter activity [Evidence IGI,IMP] [PMID 15961382]; GO_process: GO:0006812 - cation transport [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006829 - zinc ion transport [Evidence IMP] [PMID 10978274]; GO_process: GO:0006829 - zinc ion transport [Evidence IGI,IMP] [PMID 15961382]; Zn(2+) transporter ZRG17 2915816 ZRG17 30037998 ZRG17 Sugiyamaella lignohabitans Zn(2+) transporter ZRG17 XP_018735128.1 2913573 R 796027 CDS AWJ20_914 30037999 2916802..2917887 A 1 NC_031672.1 Anthranilate phosphoribosyl transferase; transferase of the tryptophan biosynthetic pathway; catalyzes the phosphoribosylation of anthranilate; subject to the general control system of amino acid biosynthesis; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0004048 - anthranilate phosphoribosyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0004048 - anthranilate phosphoribosyltransferase activity [Evidence ISS] [PMID 2428012]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA,IEA]; GO_process: GO:0009073 - aromatic amino acid family biosynthetic process [Evidence IEA]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0000162 - tryptophan biosynthetic process [Evidence IEA,IEA,IEA]; GO_process: GO:0000162 - tryptophan biosynthetic process [Evidence IMP] [PMID 10790693]; anthranilate phosphoribosyltransferase 2917887 TRP4 30037999 TRP4 Sugiyamaella lignohabitans anthranilate phosphoribosyltransferase XP_018735129.1 2916802 D 796027 CDS AWJ20_915 30038000 2918266..2921190 A 1 NC_031672.1 pericentrin Pcp1 2921190 pcp1 30038000 pcp1 Sugiyamaella lignohabitans pericentrin Pcp1 XP_018735130.1 2918266 D 796027 CDS AWJ20_916 30038001 complement(2923461..2924072) A 1 NC_031672.1 uncharacterized protein 2924072 30038001 AWJ20_916 Sugiyamaella lignohabitans uncharacterized protein XP_018735131.1 2923461 R 796027 CDS AWJ20_917 30038002 2925541..2927253 A 1 NC_031672.1 Protein that regulates Arf1p, Arf2p to facilitate Golgi trafficking; binds phosphatidylinositol 4-phosphate, which plays a role in TGN localization; has homology to gamma-adaptin; GGA2 has a paralog, GGA1, that arose from the whole genome duplication; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA,IEA]; GO_component: GO:0030131 - clathrin adaptor complex [Evidence IEA]; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0005802 - trans-Golgi network [Evidence IDA] [PMID 10747088]; GO_function: GO:0070273 - phosphatidylinositol-4-phosphate binding [Evidence IDA,IMP] [PMID 18287542]; GO_function: GO:0043130 - ubiquitin binding [Evidence IDA] [PMID 15039776]; GO_function: GO:0043130 - ubiquitin binding [Evidence IMP] [PMID 19574226]; GO_process: GO:0006895 - Golgi to endosome transport [Evidence IMP] [PMID 15039776]; GO_process: GO:0006896 - Golgi to vacuole transport [Evidence IMP,IPI] [PMID 10747088]; GO_process: GO:0006886 - intracellular protein transport [Evidence IEA]; GO_process: GO:0043328 - protein targeting to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway [Evidence IMP] [PMID 15039776]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IEA]; Gga2p 2927253 GGA2 30038002 GGA2 Sugiyamaella lignohabitans Gga2p XP_018735132.1 2925541 D 796027 CDS AWJ20_918 30038003 complement(2927684..2931613) A 1 NC_031672.1 Component of the NuA4 histone acetyltransferase complex; acts as a platform for assembly of NuA4 subunits into the native complex; required for initiation of pre-meiotic DNA replication, likely due to its requirement for expression of IME1; GO_component: GO:0035267 - NuA4 histone acetyltransferase complex [Evidence IPI] [PMID 15353583]; GO_component: GO:0035267 - NuA4 histone acetyltransferase complex [Evidence IPI] [PMID 15485911]; GO_component: GO:0000123 - histone acetyltransferase complex [Evidence IPI] [PMID 12672825]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0003682 - chromatin binding [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006281 - DNA repair [Evidence IEA]; GO_process: GO:0006281 - DNA repair [Evidence IDA] [PMID 16135807]; GO_process: GO:0043623 - cellular protein complex assembly [Evidence IMP] [PMID 18212047]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0016568 - chromatin modification [Evidence IEA]; GO_process: GO:0016568 - chromatin modification [Evidence IPI] [PMID 12672825]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Eaf1p 2931613 EAF1 30038003 EAF1 Sugiyamaella lignohabitans Eaf1p XP_018735133.1 2927684 R 796027 CDS AWJ20_919 30038004 2932860..2934881 A 1 NC_031672.1 uncharacterized protein 2934881 30038004 AWJ20_919 Sugiyamaella lignohabitans uncharacterized protein XP_018735134.1 2932860 D 796027 CDS AWJ20_920 30038006 complement(2936855..2937862) A 1 NC_031672.1 uncharacterized protein 2937862 30038006 AWJ20_920 Sugiyamaella lignohabitans uncharacterized protein XP_018735135.1 2936855 R 796027 CDS AWJ20_921 30038007 join(2938854..2938919,2938990..2940276) A 1 NC_031672.1 Protein that binds tRNA and methionyl- and glutamyl-tRNA synthetases; involved in tRNA delivery, stimulating catalysis, and ensuring localization; also binds quadruplex nucleic acids; protein abundance increases in response to DNA replication stress; methionyl-tRNA synthetase is Mes1p; glutamyl-tRNA synthetase is Gus1p; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11726524]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 15710377]; GO_component: GO:0017102 - methionyl glutamyl tRNA synthetase complex [Evidence IMP,IPI] [PMID 9659920]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0008047 - enzyme activator activity [Evidence IDA] [PMID 11069915]; GO_function: GO:0080025 - phosphatidylinositol-3,5-bisphosphate binding [Evidence IDA] [PMID 16343487]; GO_function: GO:0032266 - phosphatidylinositol-3-phosphate binding [Evidence IDA] [PMID 16343487]; GO_function: GO:0000049 - tRNA binding [Evidence IEA,IEA]; GO_function: GO:0000049 - tRNA binding [Evidence IMP,IPI] [PMID 11726524]; GO_process: GO:0051351 - positive regulation of ligase activity [Evidence IDA] [PMID 11069915]; GO_process: GO:0006418 - tRNA aminoacylation for protein translation [Evidence IMP] [PMID 9659920]; Arc1p 2940276 ARC1 30038007 ARC1 Sugiyamaella lignohabitans Arc1p XP_018735136.1 2938854 D 796027 CDS AWJ20_922 30038008 2941915..2944320 A 1 NC_031672.1 uncharacterized protein 2944320 30038008 AWJ20_922 Sugiyamaella lignohabitans uncharacterized protein XP_018735137.1 2941915 D 796027 CDS AWJ20_923 30038009 complement(2944700..2946964) A 1 NC_031672.1 uncharacterized protein 2946964 30038009 AWJ20_923 Sugiyamaella lignohabitans uncharacterized protein XP_018735138.1 2944700 R 796027 CDS AWJ20_924 30038010 complement(2947007..2948086) A 1 NC_031672.1 uncharacterized protein 2948086 30038010 AWJ20_924 Sugiyamaella lignohabitans uncharacterized protein XP_018735139.1 2947007 R 796027 CDS AWJ20_925 30038011 complement(2948747..2949451) A 1 NC_031672.1 Isoamyl acetate-hydrolyzing esterase; required in balance with alcohol acetyltransferase to maintain optimal amounts of isoamyl acetate, which is particularly important in sake brewing; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA,IEA]; GO_function: GO:0016788 - hydrolase activity, acting on ester bonds [Evidence IEA]; GO_function: GO:0016788 - hydrolase activity, acting on ester bonds [Evidence IDA] [PMID 10855721]; GO_process: GO:0006083 - acetate metabolic process [Evidence IDA] [PMID 10855721]; GO_process: GO:0016042 - lipid catabolic process [Evidence IEA]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA,IEA]; Iah1p 2949451 IAH1 30038011 IAH1 Sugiyamaella lignohabitans Iah1p XP_018735140.1 2948747 R 796027 CDS AWJ20_926 30038012 2950019..2950909 A 1 NC_031672.1 NADPH-dependent aldo-keto reductase; reduces multiple substrates including 2-methylbutyraldehyde and D,L-glyceraldehyde, expression is induced by osmotic and oxidative stress; functionally redundant with other aldo-keto reductases; protein abundance increases in response to DNA replication stress; YPR1 has a paralog, GCY1, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0004032 - alditol:NADP+ 1-oxidoreductase activity [Evidence IDA,ISS] [PMID 11306085]; GO_function: GO:0004090 - carbonyl reductase (NADPH) activity [Evidence IDA] [PMID 19016485]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_process: GO:0042843 - D-xylose catabolic process [Evidence IDA] [PMID 12271459]; GO_process: GO:0019568 - arabinose catabolic process [Evidence IDA,IMP] [PMID 12271459]; GO_process: GO:0034599 - cellular response to oxidative stress [Evidence IGI] [PMID 17919749]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; trifunctional aldehyde reductase/carbonyl reductase (NADPH)/glucose 1-dehydrogenase (NADP(+)) YPR1 2950909 YPR1 30038012 YPR1 Sugiyamaella lignohabitans trifunctional aldehyde reductase/carbonyl reductase (NADPH)/glucose 1-dehydrogenase (NADP(+)) YPR1 XP_018735141.1 2950019 D 796027 CDS AWJ20_928 30038014 complement(2952253..2953833) A 1 NC_031672.1 galactose permease GAL2 2953833 GAL2 30038014 GAL2 Sugiyamaella lignohabitans galactose permease GAL2 XP_018735142.1 2952253 R 796027 CDS AWJ20_929 30038015 2961165..2962850 A 1 NC_031672.1 Transcriptional regulator of nonfermentable carbon utilization; GFP-fusion protein localizes to cytoplasm, nucleus; null mutation affects periodicity of transcriptional and metabolic oscillation; plays role in restricting Ty1 transposition; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19111667]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19158363]; GO_function: GO:0000981 - sequence-specific DNA binding RNA polymerase II transcription factor activity [Evidence IEA]; GO_function: GO:0004871 - signal transducer activity [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0006094 - gluconeogenesis [Evidence IEA]; GO_process: GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence IEA]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA,IEA]; GO_process: GO:0007165 - signal transduction [Evidence IEA]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Ert1p 2962850 ERT1 30038015 ERT1 Sugiyamaella lignohabitans Ert1p XP_018735143.1 2961165 D 796027 CDS AWJ20_930 30038017 2964839..2965879 A 1 NC_031672.1 Actin; structural protein involved in cell polarization, endocytosis, and other cytoskeletal functions; GO_component: GO:0031011 - Ino80 complex [Evidence IPI] [PMID 10952318]; GO_component: GO:0031011 - Ino80 complex [Evidence IPI] [PMID 24034245]; GO_component: GO:0035267 - NuA4 histone acetyltransferase complex [Evidence IDA] [PMID 10911987]; GO_component: GO:0035267 - NuA4 histone acetyltransferase complex [Evidence IPI] [PMID 15485911]; GO_component: GO:0000812 - Swr1 complex [Evidence IDA] [PMID 14645854]; GO_component: GO:0000812 - Swr1 complex [Evidence IDA] [PMID 14690608]; GO_component: GO:0000812 - Swr1 complex [Evidence IDA] [PMID 16299513]; GO_component: GO:0030479 - actin cortical patch [Evidence IDA] [PMID 3967297]; GO_component: GO:0030479 - actin cortical patch [Evidence IDA] [PMID 6365930]; GO_component: GO:0030479 - actin cortical patch [Evidence IDA] [PMID 8163554]; GO_component: GO:0005884 - actin filament [Evidence IDA] [PMID 6217414]; GO_component: GO:0032432 - actin filament bundle [Evidence IDA] [PMID 3967297]; GO_component: GO:0032432 - actin filament bundle [Evidence IDA] [PMID 6365930]; GO_component: GO:0032432 - actin filament bundle [Evidence IDA] [PMID 8163554]; GO_component: GO:0000142 - cellular bud neck contractile ring [Evidence IDA] [PMID 3967297]; GO_component: GO:0000142 - cellular bud neck contractile ring [Evidence IDA] [PMID 8163554]; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA,IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0004402 - histone acetyltransferase activity [Evidence IDA] [PMID 10911987]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0005200 - structural constituent of cytoskeleton [Evidence IDA] [PMID 6217414]; GO_process: GO:0006281 - DNA repair [Evidence IDA] [PMID 16135807]; GO_process: GO:0000916 - actomyosin contractile ring contraction [Evidence IDA,IMP] [PMID 9732290]; GO_process: GO:0030476 - ascospore wall assembly [Evidence IDA] [PMID 17118118]; GO_process: GO:0007119 - budding cell isotropic bud growth [Evidence TAS] [PMID 10652251]; GO_process: GO:0034599 - cellular response to oxidative stress [Evidence IGI] [PMID 17287397]; GO_process: GO:0001300 - chronological cell aging [Evidence IMP] [PMID 15024029]; GO_process: GO:0006897 - endocytosis [Evidence IMP] [PMID 8590801]; GO_process: GO:0030010 - establishment of cell polarity [Evidence IGI] [PMID 9864365]; GO_process: GO:0000132 - establishment of mitotic spindle orientation [Evidence TAS] [PMID 10652251]; GO_process: GO:0006887 - exocytosis [Evidence TAS] [PMID 10652251]; GO_process: GO:0031505 - fungal-type cell wall organization [Evidence TAS] [PMID 10652251]; GO_process: GO:0016573 - histone acetylation [Evidence IDA] [PMID 10911987]; GO_process: GO:0000001 - mitochondrion inheritance [Evidence TAS] [PMID 10652251]; GO_process: GO:0009306 - protein secretion [Evidence IGI,IMP] [PMID 10793147]; GO_process: GO:0000011 - vacuole inheritance [Evidence IGI,IMP] [PMID 8978821]; GO_process: GO:0030050 - vesicle transport along actin filament [Evidence TAS] [PMID 10652251]; actin 2965879 ACT1 30038017 ACT1 Sugiyamaella lignohabitans actin XP_018735144.1 2964839 D 796027 CDS AWJ20_931 30038018 2966988..2968832 A 1 NC_031672.1 Phosphatidylinositol-4-phosphate 5-kinase; involved in actin cytoskeleton organization and cell morphogenesis; multicopy suppressor of stt4 mutation; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9624177]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 9624177]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IEA]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IDA] [PMID 9624177]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IDA] [PMID 9624178]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016307 - phosphatidylinositol phosphate kinase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0031321 - ascospore-type prospore assembly [Evidence IGI] [PMID 19502581]; GO_process: GO:0046488 - phosphatidylinositol metabolic process [Evidence IEA]; GO_process: GO:0046854 - phosphatidylinositol phosphorylation [Evidence IDA] [PMID 9624177]; GO_process: GO:0046854 - phosphatidylinositol phosphorylation [Evidence IDA] [PMID 9624178]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; 1-phosphatidylinositol-4-phosphate 5-kinase 2968832 MSS4 30038018 MSS4 Sugiyamaella lignohabitans 1-phosphatidylinositol-4-phosphate 5-kinase XP_018735145.1 2966988 D 796027 CDS AWJ20_933 30038020 2974243..2975304 A 1 NC_031672.1 uncharacterized protein 2975304 30038020 AWJ20_933 Sugiyamaella lignohabitans uncharacterized protein XP_018735146.1 2974243 D 796027 CDS AWJ20_934 30038021 complement(2976781..2977818) A 1 NC_031672.1 uncharacterized protein 2977818 30038021 AWJ20_934 Sugiyamaella lignohabitans uncharacterized protein XP_018735147.1 2976781 R 796027 CDS AWJ20_935 30038022 complement(2980207..2980551) A 1 NC_031672.1 Class E protein of the vacuolar protein-sorting (Vps) pathway; binds Vps4p and directs it to dissociate ESCRT-III complexes; forms a functional and physical complex with Ist1p; human ortholog may be altered in breast tumors; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11029042]; GO_component: GO:0012505 - endomembrane system [Evidence IEA]; GO_component: GO:0005768 - endosome [Evidence IEA]; GO_component: GO:0010008 - endosome membrane [Evidence IEA]; GO_component: GO:0005770 - late endosome [Evidence IDA] [PMID 11029042]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0045324 - late endosome to vacuole transport [Evidence IMP] [PMID 12194857]; GO_process: GO:0032511 - late endosome to vacuole transport via multivesicular body sorting pathway [Evidence IMP] [PMID 17130288]; GO_process: GO:0006623 - protein targeting to vacuole [Evidence IMP] [PMID 11029042]; GO_process: GO:0015031 - protein transport [Evidence IEA,IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Did2p 2980551 DID2 30038022 DID2 Sugiyamaella lignohabitans Did2p XP_018735148.1 2980207 R 796027 CDS AWJ20_936 30038023 complement(2981742..2983688) A 1 NC_031672.1 Ski complex component and putative RNA helicase; mediates 3'-5' RNA degradation by the cytoplasmic exosome; null mutants have superkiller phenotype of increased viral dsRNAs and are synthetic lethal with mutations in 5'-3' mRNA decay; mutations in the human ortholog, SKIV2L, causes Syndromic diarrhea/Trichohepatoenteric (SD/THE) syndrome; GO_component: GO:0055087 - Ski complex [Evidence IDA] [PMID 10744028]; GO_component: GO:0055087 - Ski complex [Evidence IDA,IPI] [PMID 18042677]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 23222640]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0008026 - ATP-dependent helicase activity [Evidence IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003724 - RNA helicase activity [Evidence ISS] [PMID 8321235]; GO_function: GO:0004386 - helicase activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016817 - hydrolase activity, acting on acid anhydrides [Evidence IEA]; GO_function: GO:0016818 - hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides [Evidence IEA]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0051607 - defense response to virus [Evidence IEA]; GO_process: GO:0070478 - nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay [Evidence IGI] [PMID 12769863]; GO_process: GO:0070478 - nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay [Evidence IGI,IMP] [PMID 12881429]; GO_process: GO:0034427 - nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5' [Evidence IMP] [PMID 10611222]; GO_process: GO:0034427 - nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5' [Evidence IMP] [PMID 9482746]; GO_process: GO:0070481 - nuclear-transcribed mRNA catabolic process, non-stop decay [Evidence IMP] [PMID 11910110]; GO_process: GO:0070481 - nuclear-transcribed mRNA catabolic process, non-stop decay [Evidence IMP] [PMID 17660569]; GO_process: GO:0006417 - regulation of translation [Evidence IEA]; SKI complex RNA helicase subunit SKI2 2983688 SKI2 30038023 SKI2 Sugiyamaella lignohabitans SKI complex RNA helicase subunit SKI2 XP_018735149.1 2981742 R 796027 CDS AWJ20_937 30038024 complement(join(2984258..2984265,2984351..2985377)) A 1 NC_031672.1 Ski complex component and putative RNA helicase; mediates 3'-5' RNA degradation by the cytoplasmic exosome; null mutants have superkiller phenotype of increased viral dsRNAs and are synthetic lethal with mutations in 5'-3' mRNA decay; mutations in the human ortholog, SKIV2L, causes Syndromic diarrhea/Trichohepatoenteric (SD/THE) syndrome; GO_component: GO:0055087 - Ski complex [Evidence IDA] [PMID 10744028]; GO_component: GO:0055087 - Ski complex [Evidence IDA,IPI] [PMID 18042677]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 23222640]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0008026 - ATP-dependent helicase activity [Evidence IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003724 - RNA helicase activity [Evidence ISS] [PMID 8321235]; GO_function: GO:0004386 - helicase activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016817 - hydrolase activity, acting on acid anhydrides [Evidence IEA]; GO_function: GO:0016818 - hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides [Evidence IEA]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0051607 - defense response to virus [Evidence IEA]; GO_process: GO:0070478 - nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay [Evidence IGI] [PMID 12769863]; GO_process: GO:0070478 - nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay [Evidence IGI,IMP] [PMID 12881429]; GO_process: GO:0034427 - nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5' [Evidence IMP] [PMID 10611222]; GO_process: GO:0034427 - nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5' [Evidence IMP] [PMID 9482746]; GO_process: GO:0070481 - nuclear-transcribed mRNA catabolic process, non-stop decay [Evidence IMP] [PMID 11910110]; GO_process: GO:0070481 - nuclear-transcribed mRNA catabolic process, non-stop decay [Evidence IMP] [PMID 17660569]; GO_process: GO:0006417 - regulation of translation [Evidence IEA]; SKI complex RNA helicase subunit SKI2 2985377 SKI2 30038024 SKI2 Sugiyamaella lignohabitans SKI complex RNA helicase subunit SKI2 XP_018735150.1 2984258 R 796027 CDS AWJ20_938 30038025 2988031..2989278 A 1 NC_031672.1 Cytosolic NADP-specific isocitrate dehydrogenase; catalyzes oxidation of isocitrate to alpha-ketoglutarate; levels are elevated during growth on non-fermentable carbon sources and reduced during growth on glucose; IDP2 has a paralog, IDP3, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 15001388]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 19854152]; GO_function: GO:0051287 - NAD binding [Evidence IEA]; GO_function: GO:0004450 - isocitrate dehydrogenase (NADP+) activity [Evidence IEA,IEA]; GO_function: GO:0004450 - isocitrate dehydrogenase (NADP+) activity [Evidence IDA] [PMID 15574419]; GO_function: GO:0000287 - magnesium ion binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor [Evidence IEA]; GO_process: GO:0006097 - glyoxylate cycle [Evidence IEA]; GO_process: GO:0006102 - isocitrate metabolic process [Evidence IEA]; GO_process: GO:0006102 - isocitrate metabolic process [Evidence IGI,IMP] [PMID 15574419]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0006099 - tricarboxylic acid cycle [Evidence IEA]; isocitrate dehydrogenase (NADP(+)) IDP2 2989278 IDP2 30038025 IDP2 Sugiyamaella lignohabitans isocitrate dehydrogenase (NADP(+)) IDP2 XP_018735151.1 2988031 D 796027 CDS AWJ20_939 30038026 2990948..2992390 A 1 NC_031672.1 uncharacterized protein 2992390 30038026 AWJ20_939 Sugiyamaella lignohabitans uncharacterized protein XP_018735152.1 2990948 D 796027 CDS AWJ20_940 30038028 2992753..2993472 A 1 NC_031672.1 uncharacterized protein 2993472 30038028 AWJ20_940 Sugiyamaella lignohabitans uncharacterized protein XP_018735153.1 2992753 D 796027 CDS AWJ20_941 30038029 complement(2993751..2995337) A 1 NC_031672.1 uncharacterized protein 2995337 30038029 AWJ20_941 Sugiyamaella lignohabitans uncharacterized protein XP_018735154.1 2993751 R 796027 CDS AWJ20_942 30038030 complement(2999214..3000317) A 1 NC_031672.1 uncharacterized protein 3000317 30038030 AWJ20_942 Sugiyamaella lignohabitans uncharacterized protein XP_018735155.1 2999214 R 796027 CDS AWJ20_943 30038031 3001764..3003494 A 1 NC_031672.1 Mitochondrial C1-tetrahydrofolate synthase; involved in interconversion between different oxidation states of tetrahydrofolate (THF); provides activities of formyl-THF synthetase, methenyl-THF cyclohydrolase, and methylene-THF dehydrogenase; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 3528153]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA,IEA]; GO_function: GO:0004329 - formate-tetrahydrofolate ligase activity [Evidence IEA,IEA]; GO_function: GO:0004329 - formate-tetrahydrofolate ligase activity [Evidence IDA] [PMID 3528153]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0004477 - methenyltetrahydrofolate cyclohydrolase activity [Evidence IEA]; GO_function: GO:0004477 - methenyltetrahydrofolate cyclohydrolase activity [Evidence IDA] [PMID 3528153]; GO_function: GO:0004488 - methylenetetrahydrofolate dehydrogenase (NADP+) activity [Evidence IEA,IEA]; GO_function: GO:0004488 - methylenetetrahydrofolate dehydrogenase (NADP+) activity [Evidence IDA] [PMID 3528153]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0046656 - folic acid biosynthetic process [Evidence IDA] [PMID 3528153]; GO_process: GO:0009396 - folic acid-containing compound biosynthetic process [Evidence IEA]; GO_process: GO:0000105 - histidine biosynthetic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0009086 - methionine biosynthetic process [Evidence IEA]; GO_process: GO:0006139 - nucleobase-containing compound metabolic process [Evidence IMP] [PMID 10781559]; GO_process: GO:0006730 - one-carbon metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0006164 - purine nucleotide biosynthetic process [Evidence IEA]; GO_process: GO:0035999 - tetrahydrofolate interconversion [Evidence IEA]; trifunctional formate-tetrahydrofolate ligase 3003494 MIS1 30038031 MIS1 Sugiyamaella lignohabitans trifunctional formate-tetrahydrofolate ligase XP_018735156.1 3001764 D 796027 CDS AWJ20_944 30038032 complement(3003657..3003899) A 1 NC_031672.1 uncharacterized protein 3003899 30038032 AWJ20_944 Sugiyamaella lignohabitans uncharacterized protein XP_018735157.1 3003657 R 796027 CDS AWJ20_945 30038033 3003832..3004617 A 1 NC_031672.1 Mitochondrial C1-tetrahydrofolate synthase; involved in interconversion between different oxidation states of tetrahydrofolate (THF); provides activities of formyl-THF synthetase, methenyl-THF cyclohydrolase, and methylene-THF dehydrogenase; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 3528153]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA,IEA]; GO_function: GO:0004329 - formate-tetrahydrofolate ligase activity [Evidence IEA,IEA]; GO_function: GO:0004329 - formate-tetrahydrofolate ligase activity [Evidence IDA] [PMID 3528153]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0004477 - methenyltetrahydrofolate cyclohydrolase activity [Evidence IEA]; GO_function: GO:0004477 - methenyltetrahydrofolate cyclohydrolase activity [Evidence IDA] [PMID 3528153]; GO_function: GO:0004488 - methylenetetrahydrofolate dehydrogenase (NADP+) activity [Evidence IEA,IEA]; GO_function: GO:0004488 - methylenetetrahydrofolate dehydrogenase (NADP+) activity [Evidence IDA] [PMID 3528153]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0046656 - folic acid biosynthetic process [Evidence IDA] [PMID 3528153]; GO_process: GO:0009396 - folic acid-containing compound biosynthetic process [Evidence IEA]; GO_process: GO:0000105 - histidine biosynthetic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0009086 - methionine biosynthetic process [Evidence IEA]; GO_process: GO:0006139 - nucleobase-containing compound metabolic process [Evidence IMP] [PMID 10781559]; GO_process: GO:0006730 - one-carbon metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0006164 - purine nucleotide biosynthetic process [Evidence IEA]; GO_process: GO:0035999 - tetrahydrofolate interconversion [Evidence IEA]; trifunctional formate-tetrahydrofolate ligase 3004617 MIS1 30038033 MIS1 Sugiyamaella lignohabitans trifunctional formate-tetrahydrofolate ligase XP_018735158.1 3003832 D 796027 CDS AWJ20_947 30038035 3005649..3006149 A 1 NC_031672.1 Protein involved in inserting tail-anchored proteins into ER membranes; forms a complex with Get4p; required for efficient mating; involved in shmoo formation and nuclear migration in the pre-zygote; associates with ribosomes; GO_component: GO:0072380 - TRC complex [Evidence IDA] [PMID 20850366]; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0010494 - cytoplasmic stress granule [Evidence IDA] [PMID 23285234]; GO_component: GO:0005829 - cytosol [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 16390866]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 23285234]; GO_component: GO:0005840 - ribosome [Evidence IDA] [PMID 16702403]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0000753 - cell morphogenesis involved in conjugation with cellular fusion [Evidence IMP] [PMID 16390866]; GO_process: GO:0006620 - posttranslational protein targeting to membrane [Evidence IDA] [PMID 20850366]; GO_process: GO:0045048 - protein insertion into ER membrane [Evidence IGI] [PMID 19325107]; Mdy2p 3006149 MDY2 30038035 MDY2 Sugiyamaella lignohabitans Mdy2p XP_018735159.1 3005649 D 796027 CDS AWJ20_948 30038036 complement(3006345..3007490) A 1 NC_031672.1 Mitochondrial ribosomal protein of the large subunit; located in close proximity to the polypeptide exit channel of the ribosome; mutations in human homolog MRPL44 cause childhood cardiomyopathy; human MRPL44 deficiency results in inefficient assembly of the mitochondrial ribosome, and in tissue-specific respiratory chain deficiency, manifesting as either Complex I+Complex IV or Complex IV deficiency, depending on a cell type; GO_component: GO:0005762 - mitochondrial large ribosomal subunit [Evidence IPI] [PMID 12392552]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA,IEA]; GO_function: GO:0004525 - ribonuclease III activity [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IPI] [PMID 12392552]; GO_process: GO:0090501 - RNA phosphodiester bond hydrolysis [Evidence IEA]; GO_process: GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic [Evidence IEA]; GO_process: GO:0006396 - RNA processing [Evidence IEA]; GO_process: GO:0032543 - mitochondrial translation [Evidence IC] [PMID 12392552]; GO_process: GO:0016075 - rRNA catabolic process [Evidence IEA]; mitochondrial 54S ribosomal protein YmL3 3007490 MRPL3 30038036 MRPL3 Sugiyamaella lignohabitans mitochondrial 54S ribosomal protein YmL3 XP_018735160.1 3006345 R 796027 CDS AWJ20_949 30038037 complement(3009002..3013255) A 1 NC_031672.1 Component of the mitotic spindle; binds to interpolar microtubules via its association with beta-tubulin (Tub2p); required for interpolar microtubules to provide an outward force on the spindle poles; GO_component: GO:0005694 - chromosome [Evidence IEA]; GO_component: GO:0000775 - chromosome, centromeric region [Evidence IEA]; GO_component: GO:0000777 - condensed chromosome kinetochore [Evidence IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA,IEA]; GO_component: GO:0000776 - kinetochore [Evidence IEA]; GO_component: GO:0005874 - microtubule [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005819 - spindle [Evidence IEA]; GO_component: GO:0005816 - spindle pole body [Evidence IDA] [PMID 9585415]; GO_function: GO:0005200 - structural constituent of cytoskeleton [Evidence IPI] [PMID 9585415]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0007020 - microtubule nucleation [Evidence IPI] [PMID 9153752]; GO_process: GO:0007067 - mitotic nuclear division [Evidence IEA]; Stu1p 3013255 STU1 30038037 STU1 Sugiyamaella lignohabitans Stu1p XP_018735161.1 3009002 R 796027 CDS AWJ20_952 30038041 complement(3015545..3017275) A 1 NC_031672.1 Subunit of the heterodimeric FACT complex (Spt16p-Pob3p); FACT associates with chromatin via interaction with Nhp6Ap and Nhp6Bp, and reorganizes nucleosomes to facilitate access to DNA by RNA and DNA polymerases; protein abundance increases in response to DNA replication stress; GO_component: GO:0035101 - FACT complex [Evidence IGI,IPI] [PMID 11432837]; GO_component: GO:0035101 - FACT complex [Evidence IDA] [PMID 9705338]; GO_component: GO:0005658 - alpha DNA polymerase:primase complex [Evidence IDA] [PMID 10413469]; GO_component: GO:0005694 - chromosome [Evidence IEA,IEA]; GO_component: GO:0000790 - nuclear chromatin [Evidence IDA] [PMID 10413469]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0031298 - replication fork protection complex [Evidence IDA] [PMID 16531994]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0003682 - chromatin binding [Evidence IDA] [PMID 10413469]; GO_function: GO:0042393 - histone binding [Evidence IDA] [PMID 18089575]; GO_function: GO:0031491 - nucleosome binding [Evidence IDA] [PMID 11432837]; GO_process: GO:0006281 - DNA repair [Evidence IEA]; GO_process: GO:0006260 - DNA replication [Evidence IEA]; GO_process: GO:0034724 - DNA replication-independent nucleosome organization [Evidence IDA] [PMID 15082784]; GO_process: GO:0034724 - DNA replication-independent nucleosome organization [Evidence IDA] [PMID 19683499]; GO_process: GO:0006261 - DNA-dependent DNA replication [Evidence IGI,IMP] [PMID 10924459]; GO_process: GO:0006261 - DNA-dependent DNA replication [Evidence IPI] [PMID 9199353]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0045899 - positive regulation of RNA polymerase II transcriptional preinitiation complex assembly [Evidence IDA] [PMID 15987999]; GO_process: GO:0034401 - regulation of transcription by chromatin organization [Evidence IC] [PMID 19683500]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; FACT complex subunit POB3 3017275 POB3 30038041 POB3 Sugiyamaella lignohabitans FACT complex subunit POB3 XP_018735162.1 3015545 R 796027 CDS AWJ20_953 30038042 complement(3017785..3018855) A 1 NC_031672.1 Lipid raft associated protein; interacts with the plasma membrane ATPase Pma1p and has a role in its targeting to the plasma membrane by influencing its incorporation into lipid rafts; sometimes classified in the medium-chain dehydrogenase/reductases (MDRs) superfamily; AST1 has a paralog, AST2, that arose from the whole genome duplication; GO_component: GO:0005794 - Golgi apparatus [Evidence IDA] [PMID 11739806]; GO_component: GO:0005770 - late endosome [Evidence IDA] [PMID 11739806]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0045121 - membrane raft [Evidence IDA] [PMID 11739806]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 11739806]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; GO_process: GO:0006612 - protein targeting to membrane [Evidence IGI] [PMID 7822420]; GO_process: GO:0032596 - protein transport into membrane raft [Evidence IMP,IPI] [PMID 11739806]; Ast1p 3018855 AST1 30038042 AST1 Sugiyamaella lignohabitans Ast1p XP_018735163.1 3017785 R 796027 CDS AWJ20_954 30038043 complement(3020414..3020821) A 1 NC_031672.1 Small subunit of the clathrin-associated adaptor complex AP-2; AP-2 is involved in protein sorting at the plasma membrane; related to the sigma subunit of the mammalian plasma membrane clathrin-associated protein (AP-2) complex; GO_component: GO:0030122 - AP-2 adaptor complex [Evidence IDA,IPI] [PMID 10564262]; GO_component: GO:0030136 - clathrin-coated vesicle [Evidence IDA] [PMID 8157009]; GO_component: GO:0005905 - coated pit [Evidence IEA,IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0030117 - membrane coat [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005628 - prospore membrane [Evidence IDA] [PMID 24390141]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0008565 - protein transporter activity [Evidence IEA]; GO_process: GO:0006897 - endocytosis [Evidence IEA]; GO_process: GO:0006886 - intracellular protein transport [Evidence IEA]; GO_process: GO:0006886 - intracellular protein transport [Evidence IC] [PMID 10564262]; GO_process: GO:0015031 - protein transport [Evidence IEA,IEA]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IEA]; Aps2p 3020821 APS2 30038043 APS2 Sugiyamaella lignohabitans Aps2p XP_018735164.1 3020414 R 796027 CDS AWJ20_955 30038044 complement(3024443..3026230) A 1 NC_031672.1 Plasma membrane transporter for both urea and polyamines; expression is highly sensitive to nitrogen catabolite repression and induced by allophanate, the last intermediate of the allantoin degradative pathway; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 17218313]; GO_component: GO:0005886 - plasma membrane [Evidence IMP,ISS] [PMID 8335627]; GO_function: GO:0015489 - putrescine transmembrane transporter activity [Evidence IDA,IMP] [PMID 17218313]; GO_function: GO:0015606 - spermidine transmembrane transporter activity [Evidence IDA,IMP] [PMID 17218313]; GO_function: GO:0005215 - transporter activity [Evidence IEA]; GO_function: GO:0015204 - urea transmembrane transporter activity [Evidence IMP,ISS] [PMID 8335627]; GO_process: GO:0015847 - putrescine transport [Evidence IDA,IMP] [PMID 17218313]; GO_process: GO:0015848 - spermidine transport [Evidence IDA,IMP] [PMID 17218313]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; GO_process: GO:0043419 - urea catabolic process [Evidence IEP] [PMID 8335627]; GO_process: GO:0015840 - urea transport [Evidence IMP,ISS] [PMID 8335627]; Dur3p 3026230 DUR3 30038044 DUR3 Sugiyamaella lignohabitans Dur3p XP_018735165.1 3024443 R 796027 CDS AWJ20_956 30038045 complement(3026261..3026593) A 1 NC_031672.1 Plasma membrane transporter for both urea and polyamines; expression is highly sensitive to nitrogen catabolite repression and induced by allophanate, the last intermediate of the allantoin degradative pathway; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 17218313]; GO_component: GO:0005886 - plasma membrane [Evidence IMP,ISS] [PMID 8335627]; GO_function: GO:0015489 - putrescine transmembrane transporter activity [Evidence IDA,IMP] [PMID 17218313]; GO_function: GO:0015606 - spermidine transmembrane transporter activity [Evidence IDA,IMP] [PMID 17218313]; GO_function: GO:0005215 - transporter activity [Evidence IEA]; GO_function: GO:0015204 - urea transmembrane transporter activity [Evidence IMP,ISS] [PMID 8335627]; GO_process: GO:0015847 - putrescine transport [Evidence IDA,IMP] [PMID 17218313]; GO_process: GO:0015848 - spermidine transport [Evidence IDA,IMP] [PMID 17218313]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; GO_process: GO:0043419 - urea catabolic process [Evidence IEP] [PMID 8335627]; GO_process: GO:0015840 - urea transport [Evidence IMP,ISS] [PMID 8335627]; Dur3p 3026593 DUR3 30038045 DUR3 Sugiyamaella lignohabitans Dur3p XP_018735166.1 3026261 R 796027 CDS AWJ20_957 30038046 3028370..3029215 A 1 NC_031672.1 uncharacterized protein 3029215 30038046 AWJ20_957 Sugiyamaella lignohabitans uncharacterized protein XP_018735167.1 3028370 D 796027 CDS AWJ20_958 30038047 complement(3029612..3030796) A 1 NC_031672.1 uncharacterized protein 3030796 30038047 AWJ20_958 Sugiyamaella lignohabitans uncharacterized protein XP_018735168.1 3029612 R 796027 CDS AWJ20_959 30038048 3035354..3036529 A 1 NC_031672.1 Vacuolar membrane antiporter with Ca2+/H+ and K+/H+ exchange activity; involved in control of cytosolic Ca2+ and K+ concentrations; has similarity to sodium/calcium exchangers, including the bovine Na+/Ca2+,K+ antiporter; GO_component: GO:0000324 - fungal-type vacuole [Evidence IDA] [PMID 8628289]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 20709757]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0015369 - calcium:proton antiporter activity [Evidence IEA]; GO_function: GO:0015369 - calcium:proton antiporter activity [Evidence IMP] [PMID 20709757]; GO_function: GO:0015369 - calcium:proton antiporter activity [Evidence IDA,IMP] [PMID 8628289]; GO_function: GO:0008324 - cation transmembrane transporter activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0015386 - potassium:proton antiporter activity [Evidence IMP] [PMID 20709757]; GO_process: GO:0070588 - calcium ion transmembrane transport [Evidence IEA]; GO_process: GO:0006816 - calcium ion transport [Evidence IEA,IEA]; GO_process: GO:0006816 - calcium ion transport [Evidence IDA,IMP] [PMID 8628289]; GO_process: GO:0006812 - cation transport [Evidence IEA]; GO_process: GO:0006874 - cellular calcium ion homeostasis [Evidence IMP] [PMID 8628289]; GO_process: GO:0006811 - ion transport [Evidence IEA]; GO_process: GO:0006828 - manganese ion transport [Evidence IDA] [PMID 15522090]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IDA,IMP] [PMID 8628289]; GO_process: GO:0006810 - transport [Evidence IEA]; Vcx1p 3036529 VCX1 30038048 VCX1 Sugiyamaella lignohabitans Vcx1p XP_018735169.1 3035354 D 796027 CDS AWJ20_960 30038050 complement(3035977..3036261) A 1 NC_031672.1 uncharacterized protein 3036261 30038050 AWJ20_960 Sugiyamaella lignohabitans uncharacterized protein XP_018735170.1 3035977 R 796027 CDS AWJ20_961 30038051 3038557..3039735 A 1 NC_031672.1 UDP-galactose transporter Gms1 3039735 gms1 30038051 gms1 Sugiyamaella lignohabitans UDP-galactose transporter Gms1 XP_018735171.1 3038557 D 796027 CDS AWJ20_962 30038052 3047266..3048381 A 1 NC_031672.1 Cyclin, interacts with cyclin-dependent kinase Pho85p; member of the Pcl1,2-like subfamily, involved in the regulation of polarized growth and morphogenesis and progression through the cell cycle; is ubiquitinated by Dma1p; phosphorylation by Pho85p targets it for degradation; localizes to sites of polarized cell growth; GO_component: GO:0000307 - cyclin-dependent protein kinase holoenzyme complex [Evidence IPI] [PMID 7973730]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0000131 - incipient cellular bud site [Evidence IDA] [PMID 14688790]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14688790]; GO_function: GO:0016538 - cyclin-dependent protein serine/threonine kinase regulator activity [Evidence IDA] [PMID 7973730]; GO_function: GO:0019901 - protein kinase binding [Evidence IEA]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0016239 - positive regulation of macroautophagy [Evidence IMP] [PMID 20417603]; GO_process: GO:0051726 - regulation of cell cycle [Evidence IEA]; GO_process: GO:0000079 - regulation of cyclin-dependent protein serine/threonine kinase activity [Evidence IEA]; GO_process: GO:0000079 - regulation of cyclin-dependent protein serine/threonine kinase activity [Evidence IDA] [PMID 7973730]; GO_process: GO:0032878 - regulation of establishment or maintenance of cell polarity [Evidence IGI,IPI] [PMID 17853895]; GO_process: GO:0031106 - septin ring organization [Evidence IGI] [PMID 19458192]; Pcl1p 3048381 PCL1 30038052 PCL1 Sugiyamaella lignohabitans Pcl1p XP_018735172.1 3047266 D 796027 CDS AWJ20_963 30038053 complement(3048644..3050209) A 1 NC_031672.1 Putative GTPase; member of the Obg family; peripheral protein of the mitochondrial inner membrane that associates with the large ribosomal subunit; required for mitochondrial translation, possibly via a role in ribosome assembly; GO_component: GO:0019898 - extrinsic component of membrane [Evidence IDA] [PMID 15591131]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IDA] [PMID 15591131]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_function: GO:0005525 - GTP binding [Evidence IEA,IEA]; GO_function: GO:0003924 - GTPase activity [Evidence IEA]; GO_function: GO:0003924 - GTPase activity [Evidence ISS] [PMID 15591131]; GO_function: GO:0000287 - magnesium ion binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0043022 - ribosome binding [Evidence IDA] [PMID 15591131]; GO_process: GO:0006184 - GTP catabolic process [Evidence IEA]; GO_process: GO:0002181 - cytoplasmic translation [Evidence IMP] [PMID 15591131]; GO_process: GO:0006412 - translation [Evidence IEA]; putative GTPase MTG2 3050209 MTG2 30038053 MTG2 Sugiyamaella lignohabitans putative GTPase MTG2 XP_018735173.1 3048644 R 796027 CDS AWJ20_964 30038054 3050738..3053476 A 1 NC_031672.1 Nuclear actin-related protein involved in chromatin remodeling; component of chromatin-remodeling enzyme complexes; has mRNA binding activity; GO_component: GO:0031011 - Ino80 complex [Evidence IEA]; GO_component: GO:0031011 - Ino80 complex [Evidence IPI] [PMID 10952318]; GO_component: GO:0031011 - Ino80 complex [Evidence IPI] [PMID 24034245]; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11011149]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0043140 - ATP-dependent 3'-5' DNA helicase activity [Evidence IDA] [PMID 10952318]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 20844764]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IMP] [PMID 17320816]; GO_process: GO:0006338 - chromatin remodeling [Evidence IEA]; GO_process: GO:0006338 - chromatin remodeling [Evidence IMP] [PMID 12887900]; GO_process: GO:0006302 - double-strand break repair [Evidence IMP] [PMID 23644470]; GO_process: GO:0006312 - mitotic recombination [Evidence IMP] [PMID 17320816]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Arp8p 3053476 ARP8 30038054 ARP8 Sugiyamaella lignohabitans Arp8p XP_018735174.1 3050738 D 796027 CDS AWJ20_965 30038055 complement(3053660..3054538) A 1 NC_031672.1 DNAJ domain protein, DNAJC9 family 3054538 30038055 AWJ20_965 Sugiyamaella lignohabitans DNAJ domain protein, DNAJC9 family XP_018735175.1 3053660 R 796027 CDS AWJ20_966 30038056 complement(3055228..3058125) A 1 NC_031672.1 polyprotein of non-LTR retrotransposon Zorro 1 and repeat region-related DNA; polyprotein of L1-like non-LTR retrotransposon Zorro 1 3058125 POL90 30038056 POL90 Sugiyamaella lignohabitans polyprotein of L1-like non-LTR retrotransposon Zorro 1 XP_018735176.1 3055228 R 796027 CDS AWJ20_968 30038058 3061678..3062751 A 1 NC_031672.1 Subunit of DNA polymerase delta (polymerase III); essential for cell viability; involved in DNA replication and DNA repair; forms a complex with Rev3p, Rev7p and Pol32p; relocalizes to the cytosol in response to hypoxia; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 22932476]; GO_component: GO:0043625 - delta DNA polymerase complex [Evidence TAS] [PMID 9745046]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22932476]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA,IEA,IEA]; GO_function: GO:0003887 - DNA-directed DNA polymerase activity [Evidence IDA] [PMID 18635534]; GO_function: GO:0003887 - DNA-directed DNA polymerase activity [Evidence TAS] [PMID 9745046]; GO_function: GO:0016779 - nucleotidyltransferase activity [Evidence IEA]; GO_function: GO:0008310 - single-stranded DNA 3'-5' exodeoxyribonuclease activity [Evidence TAS] [PMID 9745046]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006260 - DNA replication [Evidence IEA,IEA]; GO_process: GO:0043137 - DNA replication, removal of RNA primer [Evidence IDA] [PMID 16837458]; GO_process: GO:0006278 - RNA-dependent DNA replication [Evidence IDA] [PMID 17429354]; GO_process: GO:0006284 - base-excision repair [Evidence TAS] [PMID 9745046]; GO_process: GO:0006273 - lagging strand elongation [Evidence TAS] [PMID 9745046]; GO_process: GO:0006272 - leading strand elongation [Evidence TAS] [PMID 9745046]; GO_process: GO:0006298 - mismatch repair [Evidence TAS] [PMID 10072354]; GO_process: GO:0006289 - nucleotide-excision repair [Evidence TAS] [PMID 9745046]; GO_process: GO:0006301 - postreplication repair [Evidence TAS] [PMID 9745046]; Pol31p 3062751 POL31 30038058 POL31 Sugiyamaella lignohabitans Pol31p XP_018735177.1 3061678 D 796027 CDS AWJ20_969 30038059 complement(3062894..3064441) A 1 NC_031672.1 Mitochondrial methionyl-tRNA synthetase (MetRS); functions as a monomer in mitochondrial protein synthesis; functions similarly to cytoplasmic MetRS although the cytoplasmic form contains a zinc-binding domain not found in Msm1p; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IDA,IMP] [PMID 2645139]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004812 - aminoacyl-tRNA ligase activity [Evidence IEA,IEA]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0004825 - methionine-tRNA ligase activity [Evidence IEA,IEA]; GO_function: GO:0004825 - methionine-tRNA ligase activity [Evidence IMP,ISS] [PMID 2645139]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_process: GO:0006431 - methionyl-tRNA aminoacylation [Evidence IEA]; GO_process: GO:0006431 - methionyl-tRNA aminoacylation [Evidence IMP,ISS] [PMID 2645139]; GO_process: GO:0006418 - tRNA aminoacylation for protein translation [Evidence IEA]; GO_process: GO:0006412 - translation [Evidence IEA]; methionine--tRNA ligase MSM1 3064441 MSM1 30038059 MSM1 Sugiyamaella lignohabitans methionine--tRNA ligase MSM1 XP_018735178.1 3062894 R 796027 CDS AWJ20_970 30038061 complement(3068156..3068524) A 1 NC_031672.1 uncharacterized protein 3068524 30038061 AWJ20_970 Sugiyamaella lignohabitans uncharacterized protein XP_018735179.1 3068156 R 796027 CDS AWJ20_971 30038062 3069427..3070287 A 1 NC_031672.1 uncharacterized protein 3070287 30038062 AWJ20_971 Sugiyamaella lignohabitans uncharacterized protein XP_018735180.1 3069427 D 796027 CDS AWJ20_972 30038063 complement(3070574..3072097) A 1 NC_031672.1 Subunit of COMPASS (Set1C) complex; COMPASS methylates Lys4 of histone H3 and functions in silencing at telomeres; has a C-terminal Sdc1 Dpy-30 Interaction (SDI) domain that mediates binding to Sdc1p; similar to trithorax-group protein ASH2L; GO_component: GO:0048188 - Set1C/COMPASS complex [Evidence IPI] [PMID 11687631]; GO_component: GO:0048188 - Set1C/COMPASS complex [Evidence IPI] [PMID 11742990]; GO_component: GO:0048188 - Set1C/COMPASS complex [Evidence IPI] [PMID 11752412]; GO_component: GO:0005694 - chromosome [Evidence IEA]; GO_component: GO:0000781 - chromosome, telomeric region [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0042800 - histone methyltransferase activity (H3-K4 specific) [Evidence IDA] [PMID 11742990]; GO_function: GO:0042800 - histone methyltransferase activity (H3-K4 specific) [Evidence IMP] [PMID 11752412]; GO_function: GO:0042800 - histone methyltransferase activity (H3-K4 specific) [Evidence IDA,IMP] [PMID 11805083]; GO_process: GO:0006348 - chromatin silencing at telomere [Evidence IMP] [PMID 11687631]; GO_process: GO:0006348 - chromatin silencing at telomere [Evidence IMP] [PMID 11805083]; GO_process: GO:0051568 - histone H3-K4 methylation [Evidence IDA] [PMID 11742990]; GO_process: GO:0051568 - histone H3-K4 methylation [Evidence IDA,IMP] [PMID 11752412]; GO_process: GO:0051568 - histone H3-K4 methylation [Evidence IDA,IMP] [PMID 11805083]; GO_process: GO:0080182 - histone H3-K4 trimethylation [Evidence IMP] [PMID 16921172]; GO_process: GO:0080182 - histone H3-K4 trimethylation [Evidence IMP] [PMID 16980427]; GO_process: GO:0000723 - telomere maintenance [Evidence IMP] [PMID 11742990]; Bre2p 3072097 BRE2 30038063 BRE2 Sugiyamaella lignohabitans Bre2p XP_018735181.1 3070574 R 796027 CDS AWJ20_973 30038064 join(3077586..3078759,3078826..3081839) A 1 NC_031672.1 Mucin family member involved in signaling; functions in the Cdc42p- and MAP kinase-dependent filamentous growth signaling pathway; is processed into secreted and cell-associated forms by the aspartyl protease, Yps1p; also functions as an osmosensor in parallel to the Sho1p-mediated pathway; potential Cdc28p substrate; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0005887 - integral component of plasma membrane [Evidence IMP,ISS] [PMID 12052881]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0030427 - site of polarized growth [Evidence IDA] [PMID 15256499]; GO_function: GO:0005034 - osmosensor activity [Evidence IMP] [PMID 12052881]; GO_process: GO:0030010 - establishment of cell polarity [Evidence IMP] [PMID 19439450]; GO_process: GO:0030010 - establishment of cell polarity [Evidence IGI] [PMID 2690082]; GO_process: GO:0006972 - hyperosmotic response [Evidence IGI] [PMID 17627274]; GO_process: GO:0007232 - osmosensory signaling pathway via Sho1 osmosensor [Evidence IGI] [PMID 17627274]; GO_process: GO:0006970 - response to osmotic stress [Evidence IMP] [PMID 12052881]; GO_process: GO:0001402 - signal transduction involved in filamentous growth [Evidence IEP,IGI,IMP] [PMID 15256499]; Msb2p 3081839 MSB2 30038064 MSB2 Sugiyamaella lignohabitans Msb2p XP_018735182.1 3077586 D 796027 CDS AWJ20_974 30038065 3082651..3084030 A 1 NC_031672.1 Peroxisomal cystathionine beta-lyase; converts cystathionine into homocysteine; may be redox regulated by Gto1p; involved in the release of the aromatic thiol 3-mercaptohexanol during wine fermentation; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005777 - peroxisome [Evidence IDA] [PMID 11565790]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0004121 - cystathionine beta-lyase activity [Evidence IEA,IEA]; GO_function: GO:0004121 - cystathionine beta-lyase activity [Evidence IMP,ISS] [PMID 10821189]; GO_function: GO:0004121 - cystathionine beta-lyase activity [Evidence IDA] [PMID 21478306]; GO_function: GO:0016829 - lyase activity [Evidence IEA]; GO_function: GO:0030170 - pyridoxal phosphate binding [Evidence IEA]; GO_process: GO:0071266 - 'de novo' L-methionine biosynthetic process [Evidence IEA]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0009086 - methionine biosynthetic process [Evidence IEA]; GO_process: GO:0009086 - methionine biosynthetic process [Evidence IMP] [PMID 10821189]; GO_process: GO:0019346 - transsulfuration [Evidence IMP] [PMID 10821189]; cystathionine beta-lyase STR3 3084030 STR3 30038065 STR3 Sugiyamaella lignohabitans cystathionine beta-lyase STR3 XP_018735183.1 3082651 D 796027 CDS AWJ20_975 30038066 complement(3084469..3086007) A 1 NC_031672.1 ADP-ribosylation factor GTPase activating protein (ARF GAP); involved in ER-Golgi transport; shares functional similarity with Gcs1p; GO_component: GO:0030126 - COPI vesicle coat [Evidence IPI] [PMID 15254269]; GO_component: GO:0030137 - COPI-coated vesicle [Evidence IDA] [PMID 15254269]; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA,IEA]; GO_component: GO:0005793 - endoplasmic reticulum-Golgi intermediate compartment [Evidence IPI] [PMID 9927415]; GO_function: GO:0008060 - ARF GTPase activator activity [Evidence IEA]; GO_function: GO:0008060 - ARF GTPase activator activity [Evidence IDA] [PMID 9927415]; GO_function: GO:0005096 - GTPase activator activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0048205 - COPI coating of Golgi vesicle [Evidence IDA,IMP] [PMID 15254269]; GO_process: GO:0006888 - ER to Golgi vesicle-mediated transport [Evidence IGI,IMP] [PMID 9927415]; GO_process: GO:0043547 - positive regulation of GTPase activity [Evidence IEA,IEA]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0032312 - regulation of ARF GTPase activity [Evidence IEA]; GO_process: GO:0006890 - retrograde vesicle-mediated transport, Golgi to ER [Evidence IDA,IGI,IMP] [PMID 9927415]; GO_process: GO:0006810 - transport [Evidence IEA]; Glo3p 3086007 GLO3 30038066 GLO3 Sugiyamaella lignohabitans Glo3p XP_018735184.1 3084469 R 796027 CDS AWJ20_976 30038067 3086826..3087560 A 1 NC_031672.1 subunit of NADH-ubiquinone oxidoreductase, mitochondrial precursor, putative 3087560 30038067 AWJ20_976 Sugiyamaella lignohabitans subunit of NADH-ubiquinone oxidoreductase, mitochondrial precursor, putative XP_018735185.1 3086826 D 796027 CDS AWJ20_977 30038068 complement(3094193..3094591) A 1 NC_031672.1 Mitochondrial ribosomal protein of the large subunit; not essential for mitochondrial translation; GO_component: GO:0005762 - mitochondrial large ribosomal subunit [Evidence IDA] [PMID 1544898]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IDA] [PMID 1544898]; GO_process: GO:0032543 - mitochondrial translation [Evidence IMP] [PMID 1544898]; mitochondrial 54S ribosomal protein MRP49 3094591 MRP49 30038068 MRP49 Sugiyamaella lignohabitans mitochondrial 54S ribosomal protein MRP49 XP_018735186.1 3094193 R 796027 CDS AWJ20_978 30038069 3095133..3096083 A 1 NC_031672.1 Purine nucleoside phosphorylase; specifically metabolizes inosine and guanosine nucleosides; involved in the nicotinamide riboside salvage pathway; GO_component: GO:0005622 - intracellular [Evidence IC] [PMID 11466296]; GO_component: GO:0005622 - intracellular [Evidence IC] [PMID 17482543]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0047724 - inosine nucleosidase activity [Evidence IDA] [PMID 19001417]; GO_function: GO:0070635 - nicotinamide riboside hydrolase activity [Evidence IDA] [PMID 19001417]; GO_function: GO:0004731 - purine-nucleoside phosphorylase activity [Evidence IEA,IEA]; GO_function: GO:0004731 - purine-nucleoside phosphorylase activity [Evidence IDA,IMP,ISS] [PMID 11466296]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA]; GO_function: GO:0016763 - transferase activity, transferring pentosyl groups [Evidence IEA]; GO_process: GO:0034356 - NAD biosynthesis via nicotinamide riboside salvage pathway [Evidence IGI] [PMID 19001417]; GO_process: GO:0046115 - guanosine catabolic process [Evidence IMP] [PMID 11466296]; GO_process: GO:0046115 - guanosine catabolic process [Evidence IMP] [PMID 23670538]; GO_process: GO:0006148 - inosine catabolic process [Evidence IMP] [PMID 11466296]; GO_process: GO:0006148 - inosine catabolic process [Evidence IMP] [PMID 23670538]; GO_process: GO:0019358 - nicotinate nucleotide salvage [Evidence IGI] [PMID 17482543]; GO_process: GO:0006139 - nucleobase-containing compound metabolic process [Evidence IEA]; GO_process: GO:0009116 - nucleoside metabolic process [Evidence IEA]; purine-nucleoside phosphorylase 3096083 PNP1 30038069 PNP1 Sugiyamaella lignohabitans purine-nucleoside phosphorylase XP_018735187.1 3095133 D 796027 CDS AWJ20_979 30038070 complement(3096411..3097358) A 1 NC_031672.1 Structural component of 3 distinct complexes; subunit of Nup84 nuclear pore sub-complex (NPC), COPII vesicle coat, and Seh1-associated (SEA) complex; COPII vesicle coat is required for ER to Golgi transport; the Nup84 subcomplex contributes to nucleocytoplasmic transport, NPC biogenesis and processes that may require localization of chromosomes at the nuclear periphery, including transcription; homologous to human SEC13; abundance increases under DNA replication stress; GO_component: GO:0030127 - COPII vesicle coat [Evidence IDA] [PMID 11717432]; GO_component: GO:0030127 - COPII vesicle coat [Evidence IDA] [PMID 8004676]; GO_component: GO:0012507 - ER to Golgi transport vesicle membrane [Evidence IEA]; GO_component: GO:0035859 - Seh1-associated complex [Evidence IDA] [PMID 21454883]; GO_component: GO:0031410 - cytoplasmic vesicle [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005643 - nuclear pore [Evidence IEA,IEA]; GO_component: GO:0031080 - nuclear pore outer ring [Evidence IDA] [PMID 11823431]; GO_component: GO:0031080 - nuclear pore outer ring [Evidence IDA] [PMID 18046406]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0005198 - structural molecule activity [Evidence IDA] [PMID 12671686]; GO_function: GO:0005198 - structural molecule activity [Evidence IDA] [PMID 17604721]; GO_function: GO:0005198 - structural molecule activity [Evidence IMP] [PMID 22300850]; GO_process: GO:0090114 - COPII-coated vesicle budding [Evidence IMP] [PMID 8223424]; GO_process: GO:0090114 - COPII-coated vesicle budding [Evidence IMP] [PMID 8432727]; GO_process: GO:0030433 - ER-associated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 12538638]; GO_process: GO:0051028 - mRNA transport [Evidence IEA]; GO_process: GO:0031081 - nuclear pore distribution [Evidence IMP] [PMID 10747086]; GO_process: GO:0043547 - positive regulation of GTPase activity [Evidence IDA] [PMID 11389436]; GO_process: GO:0045893 - positive regulation of transcription, DNA-templated [Evidence IDA] [PMID 15817685]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IEA]; GTPase-activating protein SEC13 3097358 SEC13 30038070 SEC13 Sugiyamaella lignohabitans GTPase-activating protein SEC13 XP_018735188.1 3096411 R 796027 CDS AWJ20_980 30038072 3097969..3099462 A 1 NC_031672.1 Subunit of TFIIH and nucleotide excision repair factor 3 complexes; involved in transcription initiation, required for nucleotide excision repair, similar to 52 kDa subunit of human TFIIH; GO_component: GO:0000439 - core TFIIH complex [Evidence IEA]; GO_component: GO:0000439 - core TFIIH complex [Evidence IDA] [PMID 14500720]; GO_component: GO:0000439 - core TFIIH complex [Evidence IDA] [PMID 19818408]; GO_component: GO:0005675 - holo TFIIH complex [Evidence IDA] [PMID 19818408]; GO_component: GO:0000112 - nucleotide-excision repair factor 3 complex [Evidence IPI] [PMID 10681587]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_function: GO:0004003 - ATP-dependent DNA helicase activity [Evidence IEA]; GO_function: GO:0000990 - core RNA polymerase binding transcription factor activity [Evidence IC] [PMID 19818408]; GO_function: GO:0003690 - double-stranded DNA binding [Evidence IDA] [PMID 19897425]; GO_process: GO:0032508 - DNA duplex unwinding [Evidence IEA]; GO_process: GO:0006281 - DNA repair [Evidence IEA]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0006289 - nucleotide-excision repair [Evidence IEA]; GO_process: GO:0006289 - nucleotide-excision repair [Evidence IMP] [PMID 9235928]; GO_process: GO:0070816 - phosphorylation of RNA polymerase II C-terminal domain [Evidence IDA] [PMID 19450536]; GO_process: GO:0070816 - phosphorylation of RNA polymerase II C-terminal domain [Evidence IDA] [PMID 19679665]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IDA] [PMID 19818408]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; TFIIH/NER complex subunit TFB2 3099462 TFB2 30038072 TFB2 Sugiyamaella lignohabitans TFIIH/NER complex subunit TFB2 XP_018735189.1 3097969 D 796027 CDS AWJ20_981 30038073 complement(3099902..3101566) A 1 NC_031672.1 Mitochondrial ATP-dependent RNA helicase of the DEAD-box family; required for assembly of the large subunit of mitochondrial ribosomes; binds to the large subunit rRNA, 21S_rRNA; localizes to the matrix face of the mitochondrial inner membrane and associates with the large subunit precursor and with mature ribosomes; GO_component: GO:0005762 - mitochondrial large ribosomal subunit [Evidence IDA] [PMID 24206665]; GO_component: GO:0005759 - mitochondrial matrix [Evidence IDA] [PMID 24206665]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 12702275]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004004 - ATP-dependent RNA helicase activity [Evidence IMP] [PMID 24206665]; GO_function: GO:0004004 - ATP-dependent RNA helicase activity [Evidence ISS] [PMID 9046088]; GO_function: GO:0008026 - ATP-dependent helicase activity [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0004386 - helicase activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:1990400 - mitochondrial ribosomal large subunit rRNA binding [Evidence IDA] [PMID 24206665]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0016070 - RNA metabolic process [Evidence IMP] [PMID 12702275]; GO_process: GO:1902775 - mitochondrial large ribosomal subunit assembly [Evidence IMP] [PMID 24206665]; Mrh4p 3101566 MRH4 30038073 MRH4 Sugiyamaella lignohabitans Mrh4p XP_018735190.1 3099902 R 796027 CDS AWJ20_982 30038074 3102243..3104318 A 1 NC_031672.1 Core component of the signal recognition particle (SRP); the SRP is a ribonucleoprotein (RNP) complex that functions in targeting nascent secretory proteins to the endoplasmic reticulum (ER) membrane; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0048500 - signal recognition particle [Evidence IEA]; GO_component: GO:0005786 - signal recognition particle, endoplasmic reticulum targeting [Evidence IEA]; GO_component: GO:0005786 - signal recognition particle, endoplasmic reticulum targeting [Evidence IDA] [PMID 7925282]; GO_function: GO:0008312 - 7S RNA binding [Evidence IEA]; GO_function: GO:0005048 - signal sequence binding [Evidence IPI] [PMID 7925282]; GO_process: GO:0006614 - SRP-dependent cotranslational protein targeting to membrane [Evidence IEA]; GO_process: GO:0006617 - SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition [Evidence IC] [PMID 7925282]; GO_process: GO:0045047 - protein targeting to ER [Evidence IPI] [PMID 7925282]; Srp72p 3104318 SRP72 30038074 SRP72 Sugiyamaella lignohabitans Srp72p XP_018735191.1 3102243 D 796027 CDS AWJ20_983 30038075 complement(3104510..3105055) A 1 NC_031672.1 Nucleolar protein required for 60S ribosome subunit biogenesis; constituent of 66S pre-ribosomal particles; physically interacts with Nop8p and the exosome subunit Rrp43p; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 9271378]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9271378]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 11583614]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 17443350]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 22735702]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 23212245]; GO_function: GO:0003723 - RNA binding [Evidence IEA,IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:1902626 - assembly of large subunit precursor of preribosome [Evidence IMP] [PMID 22735702]; GO_process: GO:0000463 - maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 9271378]; GO_process: GO:0042273 - ribosomal large subunit biogenesis [Evidence IMP] [PMID 9271378]; GO_process: GO:0042255 - ribosome assembly [Evidence IEA]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; Nip7p 3105055 NIP7 30038075 NIP7 Sugiyamaella lignohabitans Nip7p XP_018735192.1 3104510 R 796027 CDS AWJ20_984 30038076 complement(3105542..3106849) A 1 NC_031672.1 tRNA:pseudouridine synthase; introduces pseudouridines at positions 26-28, 34-36, 65, and 67 of tRNA; nuclear protein that appears to be involved in tRNA export; also acts on U2 snRNA; PUS1 has a paralog, PUS2, that arose from the whole genome duplication; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IPI] [PMID 8641292]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0016853 - isomerase activity [Evidence IEA]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_function: GO:0009982 - pseudouridine synthase activity [Evidence IEA]; GO_function: GO:0009982 - pseudouridine synthase activity [Evidence IDA] [PMID 10356324]; GO_process: GO:0009451 - RNA modification [Evidence IEA]; GO_process: GO:0001522 - pseudouridine synthesis [Evidence IEA]; GO_process: GO:0031120 - snRNA pseudouridine synthesis [Evidence IMP] [PMID 10022901]; GO_process: GO:0008033 - tRNA processing [Evidence IEA]; GO_process: GO:0031119 - tRNA pseudouridine synthesis [Evidence IDA] [PMID 10356324]; pseudouridine synthase PUS1 3106849 PUS1 30038076 PUS1 Sugiyamaella lignohabitans pseudouridine synthase PUS1 XP_018735193.1 3105542 R 796027 CDS AWJ20_985 30038077 complement(3107658..3109862) A 1 NC_031672.1 Protein involved in ribosome biogenesis; forms a nucleolar complex with Mak21p that binds to 90S and 66S pre-ribosomes; forms a nuclear complex with Noc3p that binds to 66S pre-ribosomes; both complexes mediate intranuclear transport of ribosomal precursors; acts as part of a Mak21p-Noc2p-Rrp5p module that associates with nascent pre-rRNA during transcription and has a role in bigenesis of the large ribosomal subunit; GO_component: GO:0030690 - Noc1p-Noc2p complex [Evidence IPI] [PMID 11371346]; GO_component: GO:0030691 - Noc2p-Noc3p complex [Evidence IPI] [PMID 11371346]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 10684247]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 23209026]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 23212245]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_process: GO:0042273 - ribosomal large subunit biogenesis [Evidence IMP] [PMID 23209026]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; Noc2p 3109862 NOC2 30038077 NOC2 Sugiyamaella lignohabitans Noc2p XP_018735194.1 3107658 R 796027 CDS AWJ20_986 30038078 join(3112689..3112771,3113003..3113711) A 1 NC_031672.1 Protein with a role in the ubiquitin-proteasome pathway; interacts with ubiquitinated protein, Cdc48p and the proteasomal regulatory particle; may protect cells from trivalent metalloid induced proteotoxicity; contains a PACE promoter element and is co-regulated with proteasome subunit genes; AN1-type zinc finger protein, with DHHC and ubiquitin-like domains (UBL); ortholog of ZFAND1, a human gene linked to cancer; protein abundance increases under DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0070628 - proteasome binding [Evidence IDA] [PMID 24121501]; GO_function: GO:0070628 - proteasome binding [Evidence IDA] [PMID 24297164]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0071243 - cellular response to arsenic-containing substance [Evidence IGI,IMP] [PMID 24297164]; GO_process: GO:0043161 - proteasome-mediated ubiquitin-dependent protein catabolic process [Evidence IGI,IMP,IPI] [PMID 24121501]; Cuz1p 3113711 CUZ1 30038078 CUZ1 Sugiyamaella lignohabitans Cuz1p XP_018735195.1 3112689 D 796027 CDS AWJ20_987 30038079 3117905..3118669 A 1 NC_031672.1 Nonessential component of the TIM23 complex; interacts with the Translocase of the Outer Mitochondrial membrane (TOM complex) and with respiratory enzymes; may regulate the Translocase of the Inner Mitochondrial membrane (TIM23 complex) activity; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005744 - mitochondrial inner membrane presequence translocase complex [Evidence IEA]; GO_component: GO:0005744 - mitochondrial inner membrane presequence translocase complex [Evidence IDA] [PMID 15797382]; GO_component: GO:0005744 - mitochondrial inner membrane presequence translocase complex [Evidence IDA] [PMID 15878866]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0030150 - protein import into mitochondrial matrix [Evidence IEA]; GO_process: GO:0030150 - protein import into mitochondrial matrix [Evidence IMP] [PMID 15797382]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Tim21p 3118669 TIM21 30038079 TIM21 Sugiyamaella lignohabitans Tim21p XP_018735196.1 3117905 D 796027 CDS AWJ20_988 30038080 complement(3119350..3119871) A 1 NC_031672.1 Protein associated with the mitochondrial nucleoid; putative mitochondrial ribosomal protein with similarity to E. coli L7/L12 ribosomal protein; required for normal respiratory growth; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0042645 - mitochondrial nucleoid [Evidence IDA] [PMID 15221522]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA,IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence ISS] [PMID 9445368]; GO_process: GO:0009060 - aerobic respiration [Evidence IMP] [PMID 15221522]; GO_process: GO:0006412 - translation [Evidence IEA]; mitochondrial nucleoid protein MNP1 3119871 MNP1 30038080 MNP1 Sugiyamaella lignohabitans mitochondrial nucleoid protein MNP1 XP_018735197.1 3119350 R 796027 CDS AWJ20_989 30038081 join(3120199..3120241,3120318..3120341,3120687..3120767,3122960..3124233) A 1 NC_031672.1 putative spidroin-1-like 3124233 30038081 AWJ20_989 Sugiyamaella lignohabitans putative spidroin-1-like XP_018735198.1 3120199 D 796027 CDS AWJ20_990 30038083 complement(3121116..3126323) A 1 NC_031672.1 Enhanced Adherence to Polystyrene; similar to S. pombe predicted GPI-anchored SPBPJ4664.02; similar to RBT1; internal hexapeptide PATEST repeat region is expanded in allelic CaP19.8979; identical to C. albicans morphogenetic related gene CPH3 (AAM46085); no clear allele; putative cell wall adhesin 3126323 EAP1 30038083 EAP1 Sugiyamaella lignohabitans putative cell wall adhesin XP_018735199.1 3121116 R 796027 CDS AWJ20_991 30038084 3129294..3130142 A 1 NC_031672.1 Glycoprotein involved in cell wall beta-glucan assembly; null mutation leads to severe growth defects, aberrant multibudded morphology, and mating defects; GO_component: GO:0005618 - cell wall [Evidence IEA,IEA]; GO_component: GO:0005576 - extracellular region [Evidence IEA]; GO_component: GO:0005576 - extracellular region [Evidence IDA] [PMID 8413233]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006078 - (1->6)-beta-D-glucan biosynthetic process [Evidence IEA]; GO_process: GO:0006077 - (1->6)-beta-D-glucan metabolic process [Evidence IMP] [PMID 8413233]; GO_process: GO:0042546 - cell wall biogenesis [Evidence IEA]; GO_process: GO:0031505 - fungal-type cell wall organization [Evidence IMP] [PMID 8413233]; Kre9p 3130142 KRE9 30038084 KRE9 Sugiyamaella lignohabitans Kre9p XP_018735200.1 3129294 D 796027 CDS AWJ20_992 30038085 3130551..3132017 A 1 NC_031672.1 uncharacterized protein 3132017 30038085 AWJ20_992 Sugiyamaella lignohabitans uncharacterized protein XP_018735201.1 3130551 D 796027 CDS AWJ20_993 30038086 complement(3132304..3133923) A 1 NC_031672.1 Cell death protease essential for hypochlorite-induced apoptosis; involved in the processing of killer toxin and alpha factor precursor; cleaves Lys and Arg residues from the C-terminus of peptides and proteins; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005802 - trans-Golgi network [Evidence IDA] [PMID 8308064]; GO_function: GO:0004180 - carboxypeptidase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_function: GO:0004185 - serine-type carboxypeptidase activity [Evidence IEA]; GO_function: GO:0004185 - serine-type carboxypeptidase activity [Evidence TAS] [PMID 8308064]; GO_process: GO:0006915 - apoptotic process [Evidence IEA]; GO_process: GO:0006915 - apoptotic process [Evidence IMP] [PMID 23656787]; GO_process: GO:0006508 - proteolysis [Evidence IEA,IEA]; Kex1p 3133923 KEX1 30038086 KEX1 Sugiyamaella lignohabitans Kex1p XP_018735202.1 3132304 R 796027 CDS AWJ20_994 30038087 complement(3135084..3137918) A 1 NC_031672.1 Integral plasma membrane protein; required for axial budding in haploid cells; localizes to the incipient bud site and bud neck; glycosylated by Pmt4p; potential Cdc28p substrate; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 15282802]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0005887 - integral component of plasma membrane [Evidence IDA] [PMID 8846915]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005940 - septin ring [Evidence IDA] [PMID 8846915]; GO_function: GO:0005509 - calcium ion binding [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0007120 - axial cellular bud site selection [Evidence IMP] [PMID 8846915]; Axl2p 3137918 AXL2 30038087 AXL2 Sugiyamaella lignohabitans Axl2p XP_018735203.1 3135084 R 796027 CDS AWJ20_995 30038088 3143442..3147485 A 1 NC_031672.1 GPI inositol deacylase of the endoplasmic reticulum (ER); negatively regulates COPII vesicle formation; prevents production of vesicles with defective subunits; required for proper discrimination between resident ER proteins and Golgi-bound cargo molecules; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 8862519]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016021 - integral component of membrane [Evidence ISS] [PMID 8862519]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016788 - hydrolase activity, acting on ester bonds [Evidence IEA]; GO_function: GO:0050185 - phosphatidylinositol deacylase activity [Evidence IGI] [PMID 14734546]; GO_process: GO:0006888 - ER to Golgi vesicle-mediated transport [Evidence IMP] [PMID 8862519]; GO_process: GO:0030433 - ER-associated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 11673477]; GO_process: GO:0006505 - GPI anchor metabolic process [Evidence IEA]; GO_process: GO:0006505 - GPI anchor metabolic process [Evidence IGI] [PMID 14734546]; GO_process: GO:0006886 - intracellular protein transport [Evidence IEA]; GO_process: GO:0006621 - protein retention in ER lumen [Evidence IMP] [PMID 8862519]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0016050 - vesicle organization [Evidence IGI,IMP] [PMID 8862519]; Bst1p 3147485 BST1 30038088 BST1 Sugiyamaella lignohabitans Bst1p XP_018735204.1 3143442 D 796027 CDS AWJ20_996 30038089 complement(3147722..3148894) A 1 NC_031672.1 alpha-factor pheromone receptor STE2 3148894 STE2 30038089 STE2 Sugiyamaella lignohabitans alpha-factor pheromone receptor STE2 XP_018735205.1 3147722 R 796027 CDS AWJ20_997 30038090 3153935..3154969 A 1 NC_031672.1 uncharacterized protein 3154969 30038090 AWJ20_997 Sugiyamaella lignohabitans uncharacterized protein XP_018735206.1 3153935 D 796027 CDS AWJ20_998 30038091 complement(3158164..3159909) A 1 NC_031672.1 Ubiquitin-protein ligase subunit of the CCR4-NOT complex; with Ubc4p, ubiquitinates nascent polypeptide-associated complex subunits and histone demethyase Jhd2p; CCR4-NOT has roles in transcription regulation, mRNA degradation, and post-transcriptional modifications; regulates levels of DNA Polymerase-{alpha} to promote efficient and accurate DNA replication; GO_component: GO:0030015 - CCR4-NOT core complex [Evidence IPI] [PMID 10490603]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11889048]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA,IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19111667]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence IDA] [PMID 16926149]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence IDA] [PMID 19346402]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0031087 - deadenylation-independent decapping of nuclear-transcribed mRNA [Evidence IMP] [PMID 15706350]; GO_process: GO:0032968 - positive regulation of transcription elongation from RNA polymerase II promoter [Evidence IMP] [PMID 11404327]; GO_process: GO:0032968 - positive regulation of transcription elongation from RNA polymerase II promoter [Evidence IDA,IPI] [PMID 21406554]; GO_process: GO:0010498 - proteasomal protein catabolic process [Evidence IGI] [PMID 24261871]; GO_process: GO:0000209 - protein polyubiquitination [Evidence IDA,IMP] [PMID 19346402]; GO_process: GO:0016567 - protein ubiquitination [Evidence IDA] [PMID 16926149]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; CCR4-NOT core ubiquitin-protein ligase subunit MOT2 3159909 MOT2 30038091 MOT2 Sugiyamaella lignohabitans CCR4-NOT core ubiquitin-protein ligase subunit MOT2 XP_018735207.1 3158164 R 796027 CDS AWJ20_999 30038092 3161270..3162115 A 1 NC_031672.1 uncharacterized protein 3162115 30038092 AWJ20_999 Sugiyamaella lignohabitans uncharacterized protein XP_018735208.1 3161270 D 796027 CDS AWJ20_1000 30032755 complement(3162873..3164120) A 1 NC_031672.1 EH domain-containing protein involved in endocytosis; actin cytoskeletal organization and cell wall morphogenesis; forms a complex with Sla1p and Pan1p; GO_component: GO:0030479 - actin cortical patch [Evidence IEA]; GO_component: GO:0030479 - actin cortical patch [Evidence TAS] [PMID 10652251]; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA]; GO_component: GO:0005768 - endosome [Evidence IEA]; GO_component: GO:0010008 - endosome membrane [Evidence IEA]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 19053807]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_function: GO:0003779 - actin binding [Evidence IEA]; GO_function: GO:0005509 - calcium ion binding [Evidence IEA]; GO_function: GO:0030674 - protein binding, bridging [Evidence IPI] [PMID 10594004]; GO_process: GO:0000147 - actin cortical patch assembly [Evidence TAS] [PMID 10652251]; GO_process: GO:0007015 - actin filament organization [Evidence IEA]; GO_process: GO:0007015 - actin filament organization [Evidence TAS] [PMID 10652251]; GO_process: GO:0030476 - ascospore wall assembly [Evidence IMP] [PMID 15944351]; GO_process: GO:0007121 - bipolar cellular bud site selection [Evidence TAS] [PMID 10652251]; GO_process: GO:0006897 - endocytosis [Evidence IEA,IEA]; GO_process: GO:0006897 - endocytosis [Evidence IMP] [PMID 8380177]; End3p 3164120 END3 30032755 END3 Sugiyamaella lignohabitans End3p XP_018735209.1 3162873 R 796027 CDS AWJ20_1001 30032756 complement(3164923..3165468) A 1 NC_031672.1 ADP-ribosylation factor; GTPase of the Ras superfamily involved in regulation of coated formation vesicles in intracellular trafficking within the Golgi; ARF2 has a paralog, ARF1, that arose from the whole genome duplication; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA,IEA]; GO_component: GO:0005794 - Golgi apparatus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005794 - Golgi apparatus [Evidence IDA] [PMID 20841378]; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_function: GO:0005525 - GTP binding [Evidence IEA,IEA]; GO_function: GO:0003924 - GTPase activity [Evidence IDA] [PMID 8816753]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0016236 - macroautophagy [Evidence IMP] [PMID 20444982]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0007264 - small GTPase mediated signal transduction [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IEA]; Arf family GTPase ARF2 3165468 ARF2 30032756 ARF2 Sugiyamaella lignohabitans Arf family GTPase ARF2 XP_018735210.1 3164923 R 796027 CDS AWJ20_1002 30032757 3171117..3172850 A 1 NC_031672.1 Subunit A of the V1 peripheral membrane domain of V-ATPase; protein precursor undergoes self-catalyzed splicing to yield the extein Tfp1p and the intein Vde (PI-SceI), which is a site-specific endonuclease; the V1 peripheral membrane domain of the vacuolar H+-ATPase (V-ATPase) has eight subunits; involved in methionine restriction extension of chronological lifespan in an autophagy-dependent manner; GO_component: GO:0012505 - endomembrane system [Evidence IEA]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 18632794]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 7775427]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0033178 - proton-transporting two-sector ATPase complex, catalytic domain [Evidence IEA]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0000221 - vacuolar proton-transporting V-type ATPase, V1 domain [Evidence TAS] [PMID 10224039]; GO_component: GO:0000221 - vacuolar proton-transporting V-type ATPase, V1 domain [Evidence TAS] [PMID 9442887]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0004520 - endodeoxyribonuclease activity [Evidence TAS] [PMID 1534148]; GO_function: GO:0004519 - endonuclease activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016820 - hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances [Evidence IEA]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_function: GO:0004518 - nuclease activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0046961 - proton-transporting ATPase activity, rotational mechanism [Evidence TAS] [PMID 10224039]; GO_function: GO:0046961 - proton-transporting ATPase activity, rotational mechanism [Evidence TAS] [PMID 9442887]; GO_process: GO:0015991 - ATP hydrolysis coupled proton transport [Evidence IEA]; GO_process: GO:0046034 - ATP metabolic process [Evidence IEA]; GO_process: GO:0044267 - cellular protein metabolic process [Evidence IDA] [PMID 8508780]; GO_process: GO:0016539 - intein-mediated protein splicing [Evidence IEA]; GO_process: GO:0006314 - intron homing [Evidence IEA]; GO_process: GO:0006314 - intron homing [Evidence TAS] [PMID 1534148]; GO_process: GO:0006811 - ion transport [Evidence IEA]; GO_process: GO:0090305 - nucleic acid phosphodiester bond hydrolysis [Evidence IEA,IEA]; GO_process: GO:0030908 - protein splicing [Evidence IEA]; GO_process: GO:0015992 - proton transport [Evidence IEA,IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0007035 - vacuolar acidification [Evidence IMP] [PMID 18048916]; H(+)-transporting V1 sector ATPase subunit A 3172850 VMA1 30032757 VMA1 Sugiyamaella lignohabitans H(+)-transporting V1 sector ATPase subunit A XP_018735211.1 3171117 D 796027 CDS AWJ20_1003 30032758 complement(3175209..3175943) A 1 NC_031672.1 Catalytic subunit of protein phosphatase 2A (PP2A); functionally redundant with Pph22p; methylated at C terminus; forms alternate complexes with several regulatory subunits; involved in signal transduction and regulation of mitosis; forms nuclear foci upon DNA replication stress; PPH21 has a paralog, PPH22, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_component: GO:0000159 - protein phosphatase type 2A complex [Evidence IDA] [PMID 17550305]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA,IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004721 - phosphoprotein phosphatase activity [Evidence IEA,IEA]; GO_function: GO:0004722 - protein serine/threonine phosphatase activity [Evidence IMP] [PMID 2176150]; GO_process: GO:0000082 - G1/S transition of mitotic cell cycle [Evidence IGI] [PMID 12518319]; GO_process: GO:0007015 - actin filament organization [Evidence TAS] [PMID 9001215]; GO_process: GO:0007117 - budding cell bud growth [Evidence TAS] [PMID 9001215]; GO_process: GO:0007094 - mitotic spindle assembly checkpoint [Evidence IPI] [PMID 9001215]; GO_process: GO:0006470 - protein dephosphorylation [Evidence TAS] [PMID 9001215]; GO_process: GO:0006417 - regulation of translation [Evidence IPI] [PMID 10329624]; phosphoprotein phosphatase 2A catalytic subunit PPH21 3175943 PPH21 30032758 PPH21 Sugiyamaella lignohabitans phosphoprotein phosphatase 2A catalytic subunit PPH21 XP_018735212.1 3175209 R 796027 CDS AWJ20_1004 30032759 complement(3176032..3176490) A 1 NC_031672.1 Catalytic subunit of protein phosphatase 2A (PP2A); functionally redundant with Pph22p; methylated at C terminus; forms alternate complexes with several regulatory subunits; involved in signal transduction and regulation of mitosis; forms nuclear foci upon DNA replication stress; PPH21 has a paralog, PPH22, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_component: GO:0000159 - protein phosphatase type 2A complex [Evidence IDA] [PMID 17550305]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA,IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004721 - phosphoprotein phosphatase activity [Evidence IEA,IEA]; GO_function: GO:0004722 - protein serine/threonine phosphatase activity [Evidence IMP] [PMID 2176150]; GO_process: GO:0000082 - G1/S transition of mitotic cell cycle [Evidence IGI] [PMID 12518319]; GO_process: GO:0007015 - actin filament organization [Evidence TAS] [PMID 9001215]; GO_process: GO:0007117 - budding cell bud growth [Evidence TAS] [PMID 9001215]; GO_process: GO:0007094 - mitotic spindle assembly checkpoint [Evidence IPI] [PMID 9001215]; GO_process: GO:0006470 - protein dephosphorylation [Evidence TAS] [PMID 9001215]; GO_process: GO:0006417 - regulation of translation [Evidence IPI] [PMID 10329624]; phosphoprotein phosphatase 2A catalytic subunit PPH21 3176490 PPH21 30032759 PPH21 Sugiyamaella lignohabitans phosphoprotein phosphatase 2A catalytic subunit PPH21 XP_018735213.1 3176032 R 796027 CDS AWJ20_1005 30032760 3181694..3182314 A 1 NC_031672.1 Rho GDP dissociation inhibitor; involved in the localization and regulation of Cdc42p and Rho1p; protein abundance increases in response to DNA replication stress; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 15108020]; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 15108020]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 10066831]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 16622836]; GO_function: GO:0005096 - GTPase activator activity [Evidence IEA]; GO_function: GO:0005094 - Rho GDP-dissociation inhibitor activity [Evidence IEA]; GO_function: GO:0005094 - Rho GDP-dissociation inhibitor activity [Evidence IDA] [PMID 10066831]; GO_process: GO:0007015 - actin filament organization [Evidence IDA,IMP] [PMID 9242378]; GO_process: GO:0043547 - positive regulation of GTPase activity [Evidence IEA]; GO_process: GO:0050790 - regulation of catalytic activity [Evidence IEA]; GO_process: GO:0032889 - regulation of vacuole fusion, non-autophagic [Evidence IDA] [PMID 11598008]; GO_process: GO:0007264 - small GTPase mediated signal transduction [Evidence IPI] [PMID 10066831]; Rdi1p 3182314 RDI1 30032760 RDI1 Sugiyamaella lignohabitans Rdi1p XP_018735214.1 3181694 D 796027 CDS AWJ20_1006 30032761 complement(3182580..3184979) A 1 NC_031672.1 R3H domain-containing protein 2 3184979 RBS1 30032761 RBS1 Sugiyamaella lignohabitans R3H domain-containing protein 2 XP_018735215.1 3182580 R 796027 CDS AWJ20_1007 30032762 join(3185690..3185710,3185882..3189184) A 1 NC_031672.1 Ubiquitin chain assembly factor (E4); cooperates with a ubiquitin-activating enzyme (E1), a ubiquitin-conjugating enzyme (E2), and a ubiquitin protein ligase (E3) to conjugate ubiquitin to substrates; also functions as an E3; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0000151 - ubiquitin ligase complex [Evidence IEA]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence IEA]; GO_function: GO:0034450 - ubiquitin-ubiquitin ligase activity [Evidence IEA]; GO_function: GO:0034450 - ubiquitin-ubiquitin ligase activity [Evidence IDA] [PMID 10089879]; GO_process: GO:0030433 - ER-associated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 21148305]; GO_process: GO:0071361 - cellular response to ethanol [Evidence IMP] [PMID 10089879]; GO_process: GO:0016567 - protein ubiquitination [Evidence IEA,IEA]; GO_process: GO:0016567 - protein ubiquitination [Evidence IDA] [PMID 10089879]; GO_process: GO:0006511 - ubiquitin-dependent protein catabolic process [Evidence IEA]; GO_process: GO:0006511 - ubiquitin-dependent protein catabolic process [Evidence IMP,IPI] [PMID 10089879]; GO_process: GO:0006511 - ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 7615550]; ubiquitin-ubiquitin ligase UFD2 3189184 UFD2 30032762 UFD2 Sugiyamaella lignohabitans ubiquitin-ubiquitin ligase UFD2 XP_018735216.1 3185690 D 796027 CDS AWJ20_1008 30032763 complement(3189445..3190536) A 1 NC_031672.1 Predicted malonyl-CoA:ACP transferase; putative component of a type-II mitochondrial fatty acid synthase that produces intermediates for phospholipid remodeling; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IMP,ISS] [PMID 9388293]; GO_function: GO:0004314 - [acyl-carrier-protein] S-malonyltransferase activity [Evidence IEA]; GO_function: GO:0004314 - [acyl-carrier-protein] S-malonyltransferase activity [Evidence IMP,ISS] [PMID 9388293]; GO_function: GO:0016740 - transferase activity [Evidence IEA,IEA]; GO_function: GO:0016746 - transferase activity, transferring acyl groups [Evidence IEA]; GO_process: GO:0009060 - aerobic respiration [Evidence IMP] [PMID 9388293]; GO_process: GO:0006633 - fatty acid biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0006631 - fatty acid metabolic process [Evidence IEA]; GO_process: GO:0006631 - fatty acid metabolic process [Evidence IMP,ISS] [PMID 9388293]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; [acyl-carrier-protein] S-malonyltransferase 3190536 MCT1 30032763 MCT1 Sugiyamaella lignohabitans [acyl-carrier-protein] S-malonyltransferase XP_018735217.1 3189445 R 796027 CDS AWJ20_1009 30032764 3191592..3192584 A 1 NC_031672.1 hypothetical protein; may be involved in chitin biosynthesis by regulation of Chs3p export from the ER; relocalizes from bud neck to ER upon DNA replication stress; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 22842922]; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 22842922]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 22842922]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IDA] [PMID 10366589]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005628 - prospore membrane [Evidence IDA] [PMID 24390141]; GO_function: GO:0051082 - unfolded protein binding [Evidence IMP] [PMID 15623581]; GO_process: GO:0006888 - ER to Golgi vesicle-mediated transport [Evidence IDA] [PMID 10366589]; GO_process: GO:0034221 - fungal-type cell wall chitin biosynthetic process [Evidence IMP] [PMID 10366589]; GO_process: GO:0006457 - protein folding [Evidence IMP] [PMID 15623581]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Chs7p 3192584 CHS7 30032764 CHS7 Sugiyamaella lignohabitans Chs7p XP_018735218.1 3191592 D 796027 CDS AWJ20_1010 30032766 join(3193133..3196177,3196538..3197725) A 1 NC_031672.1 Cytoplasmic GTPase/eEF2-like factor involved in ribosomal biogenesis; with Sdo1p, a guanine nucleotide exchange factor (GEF), promotes release of Tif6p from 60S ribosomal subunits in the cytoplasm so that they can assemble with 40S subunits to generate mature ribosomes; required for quality control check of newly made large ribosomal subunits before they are released into the pool of translating ribosomes; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11779510]; GO_function: GO:0005525 - GTP binding [Evidence IEA,IEA]; GO_function: GO:0003924 - GTPase activity [Evidence IEA]; GO_function: GO:0003924 - GTPase activity [Evidence IDA] [PMID 11779510]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006184 - GTP catabolic process [Evidence IEA]; GO_process: GO:0042256 - mature ribosome assembly [Evidence IMP] [PMID 11779510]; GO_process: GO:0042256 - mature ribosome assembly [Evidence ISO] [PMID 21536732]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; GTPase RIA1 3197725 RIA1 30032766 RIA1 Sugiyamaella lignohabitans GTPase RIA1 XP_018735219.1 3193133 D 796027 CDS AWJ20_1011 30032767 3197762..3199243 A 1 NC_031672.1 uncharacterized protein 3199243 30032767 AWJ20_1011 Sugiyamaella lignohabitans uncharacterized protein XP_018735220.1 3197762 D 796027 CDS AWJ20_1012 30032768 join(3199640..3200262,3200650..3201156,3201544..3202002,3202390..3202777) A 1 NC_031672.1 uncharacterized protein 3202777 30032768 AWJ20_1012 Sugiyamaella lignohabitans uncharacterized protein XP_018735221.1 3199640 D 796027 CDS AWJ20_1013 30032769 3213915..3215813 A 1 NC_031672.1 Protein required for daughter cell separation; multiple mitotic checkpoints, and chromosome stability; contains 12 degenerate leucine-rich repeat motifs; expression is induced by the Mitotic Exit Network (MEN); GO_component: GO:0005933 - cellular bud [Evidence IDA] [PMID 12628189]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 12628189]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 12628189]; GO_function: GO:0005515 - protein binding [Evidence IPI] [PMID 12628189]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0007093 - mitotic cell cycle checkpoint [Evidence IMP] [PMID 12628189]; GO_process: GO:0007067 - mitotic nuclear division [Evidence IEA]; GO_process: GO:0001100 - negative regulation of exit from mitosis [Evidence IGI,IMP] [PMID 12628189]; Amn1p 3215813 AMN1 30032769 AMN1 Sugiyamaella lignohabitans Amn1p XP_018735222.1 3213915 D 796027 CDS AWJ20_1014 30032770 complement(3219370..3220617) A 1 NC_031672.1 hypothetical protein; has strong similarity to alanyl-tRNA synthases from Eubacteria; null mutant displays decreased translation rate and increased readthrough of premature stop codons; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm; YNL040W is not an essential gene; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0004813 - alanine-tRNA ligase activity [Evidence IEA]; GO_function: GO:0016876 - ligase activity, forming aminoacyl-tRNA and related compounds [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006419 - alanyl-tRNA aminoacylation [Evidence IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0043039 - tRNA aminoacylation [Evidence IEA]; GO_process: GO:0006412 - translation [Evidence IEA]; putative alanine--tRNA ligase 3220617 30032770 AWJ20_1014 Sugiyamaella lignohabitans putative alanine--tRNA ligase XP_018735223.1 3219370 R 796027 CDS AWJ20_1015 30032771 complement(3221015..3221659) A 1 NC_031672.1 uncharacterized protein 3221659 30032771 AWJ20_1015 Sugiyamaella lignohabitans uncharacterized protein XP_018735224.1 3221015 R 796027 CDS AWJ20_1016 30032772 complement(3221953..3222981) A 1 NC_031672.1 Fatty acid elongase, involved in sphingolipid biosynthesis; acts on fatty acids of up to 24 carbons in length; mutations have regulatory effects on 1,3-beta-glucan synthase, vacuolar ATPase, and the secretory pathway; FEN1 has a paralog, ELO1, that arose from the whole genome duplication; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 12087109]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_function: GO:0009922 - fatty acid elongase activity [Evidence IMP] [PMID 12684876]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006633 - fatty acid biosynthetic process [Evidence IEA]; GO_process: GO:0030497 - fatty acid elongation [Evidence IMP] [PMID 9211877]; GO_process: GO:0006631 - fatty acid metabolic process [Evidence IEA]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0030148 - sphingolipid biosynthetic process [Evidence IMP] [PMID 9211877]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IMP] [PMID 9832547]; fatty acid elongase ELO2 3222981 ELO2 30032772 ELO2 Sugiyamaella lignohabitans fatty acid elongase ELO2 XP_018735225.1 3221953 R 796027 CDS AWJ20_1017 30032773 complement(3224498..3228115) A 1 NC_031672.1 Rho family guanine nucleotide exchange factor ROM2 3228115 ROM2 30032773 ROM2 Sugiyamaella lignohabitans Rho family guanine nucleotide exchange factor ROM2 XP_018735226.1 3224498 R 796027 CDS AWJ20_1018 30032774 complement(join(3235269..3241119,3241528..3241535)) A 1 NC_031672.1 Subunit of the Set3C deacetylase complex; interacts directly with the Set3C subunit, Sif2p; putative DNA-binding protein; mutant has increased aneuploidy tolerance; relocalizes to the cytosol in response to hypoxia; GO_component: GO:0070210 - Rpd3L-Expanded complex [Evidence IDA] [PMID 19040720]; GO_component: GO:0034967 - Set3 complex [Evidence IDA] [PMID 11711434]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 22932476]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22932476]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0003682 - chromatin binding [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0016575 - histone deacetylation [Evidence IDA] [PMID 11711434]; GO_process: GO:0045835 - negative regulation of meiosis [Evidence IPI] [PMID 11711434]; GO_process: GO:0032874 - positive regulation of stress-activated MAPK cascade [Evidence IMP] [PMID 18487345]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IMP] [PMID 19379692]; Snt1p 3241535 SNT1 30032774 SNT1 Sugiyamaella lignohabitans Snt1p XP_018735227.1 3235269 R 796027 CDS AWJ20_1019 30032775 complement(3242117..3243508) A 1 NC_031672.1 Protein with similarity to hydroxymethylpyrimidine phosphate kinases; member of a gene family with THI20 and THI21; not required for thiamine biosynthesis; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_component: GO:0005576 - extracellular region [Evidence IEA,IEA]; GO_function: GO:0008902 - hydroxymethylpyrimidine kinase activity [Evidence IGI] [PMID 15614489]; GO_function: GO:0008972 - phosphomethylpyrimidine kinase activity [Evidence ISA] [PMID 10383756]; GO_function: GO:0008972 - phosphomethylpyrimidine kinase activity [Evidence IGI] [PMID 15614489]; GO_function: GO:0050334 - thiaminase activity [Evidence IEA]; GO_process: GO:0009228 - thiamine biosynthetic process [Evidence IEA]; GO_process: GO:0009228 - thiamine biosynthetic process [Evidence IEP] [PMID 10383756]; GO_process: GO:0006772 - thiamine metabolic process [Evidence IEA]; putative phosphomethylpyrimidine kinase 3243508 THI22 30032775 THI22 Sugiyamaella lignohabitans putative phosphomethylpyrimidine kinase XP_018735228.1 3242117 R 796027 CDS AWJ20_1020 30032777 3245542..3247353 A 1 NC_031672.1 Zinc-finger hypothetical protein; possibly involved in pre-tRNA splicing and in uptake of branched-chain amino acids; STP3 has a paralog, STP4, that arose from the whole genome duplication; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0046872 - metal ion binding [Evidence IEA,IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA,IDA] [PMID 19111667]; GO_process: GO:0008150 - biological_process [Evidence ND]; Stp3p 3247353 STP3 30032777 STP3 Sugiyamaella lignohabitans Stp3p XP_018735229.1 3245542 D 796027 CDS AWJ20_1021 30032778 complement(3250490..3251152) A 1 NC_031672.1 potential mitochondrial NADH-Ubiquinone Oxidoreductase Complex I subunit similar to Y.lipolytica NUKM subunit and mammalian PSST, CI-20kd or NDUFS7 subunit; allele of CaO19.6794; putative mitochondrial Complex I, NUKM_20kd subunit 3251152 30032778 AWJ20_1021 Sugiyamaella lignohabitans putative mitochondrial Complex I, NUKM_20kd subunit XP_018735230.1 3250490 R 796027 CDS AWJ20_1022 30032779 join(3257423..3257484,3258005..3259190) A 1 NC_031672.1 Major exo-1,3-beta-glucanase of the cell wall; involved in cell wall beta-glucan assembly; exists as three differentially glycosylated isoenzymes; EXG1 has a paralog, SPR1, that arose from the whole genome duplication; GO_component: GO:0005618 - cell wall [Evidence IEA,IEA]; GO_component: GO:0005576 - extracellular region [Evidence IEA,IEA]; GO_component: GO:0005576 - extracellular region [Evidence IDA] [PMID 19129178]; GO_component: GO:0009277 - fungal-type cell wall [Evidence IDA] [PMID 9748433]; GO_function: GO:0004338 - glucan exo-1,3-beta-glucosidase activity [Evidence IEA]; GO_function: GO:0004338 - glucan exo-1,3-beta-glucosidase activity [Evidence ISS] [PMID 9748433]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016798 - hydrolase activity, acting on glycosyl bonds [Evidence IEA]; GO_function: GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]; GO_process: GO:0005975 - carbohydrate metabolic process [Evidence IEA]; GO_process: GO:0006073 - cellular glucan metabolic process [Evidence IGI,IMP] [PMID 7565587]; GO_process: GO:0031505 - fungal-type cell wall organization [Evidence ISS] [PMID 9748433]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; Exg1p 3259190 EXG1 30032779 EXG1 Sugiyamaella lignohabitans Exg1p XP_018735231.1 3257423 D 796027 CDS AWJ20_1023 30032780 complement(3259462..3263217) A 1 NC_031672.1 Component of the spindle pole body outer plaque; acts through the mitotic exit network to specify asymmetric spindle pole body inheritance; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA]; GO_component: GO:0005635 - nuclear envelope [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0005816 - spindle pole body [Evidence IEA]; GO_component: GO:0005816 - spindle pole body [Evidence IDA] [PMID 9585415]; GO_function: GO:0005200 - structural constituent of cytoskeleton [Evidence IPI] [PMID 9585415]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0051293 - establishment of spindle localization [Evidence IGI,IMP] [PMID 22385961]; GO_process: GO:0010458 - exit from mitosis [Evidence IMP] [PMID 16888627]; GO_process: GO:0045132 - meiotic chromosome segregation [Evidence IMP] [PMID 16888627]; GO_process: GO:0007126 - meiotic nuclear division [Evidence IEA]; GO_process: GO:0007067 - mitotic nuclear division [Evidence IEA]; GO_process: GO:0000073 - spindle pole body separation [Evidence IMP] [PMID 22385961]; Nud1p 3263217 NUD1 30032780 NUD1 Sugiyamaella lignohabitans Nud1p XP_018735232.1 3259462 R 796027 CDS AWJ20_1024 30032781 3270117..3272036 A 1 NC_031672.1 Oxalyl-CoA synthetase; capable of catalyzing conversion of oxalate to oxalyl-CoA; catalyzes first step in pathway of oxalate degradation that functions to protect yeast from inhibitory effects of oxalate; peroxisomal protein that binds mRNA; localizes to both peroxisomal peripheral membrane and matrix, expression is highly inducible by oleic acid; similar to E. coli long chain acyl-CoA synthetase; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005782 - peroxisomal matrix [Evidence IEA]; GO_component: GO:0005782 - peroxisomal matrix [Evidence IDA] [PMID 8841414]; GO_component: GO:0005778 - peroxisomal membrane [Evidence IEA]; GO_component: GO:0005778 - peroxisomal membrane [Evidence IDA] [PMID 8841414]; GO_component: GO:0005777 - peroxisome [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 20844764]; GO_function: GO:0050203 - oxalate-CoA ligase activity [Evidence IDA,IMP] [PMID 24291261]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0033611 - oxalate catabolic process [Evidence IDA,IMP] [PMID 24291261]; Pcs60p 3272036 PCS60 30032781 PCS60 Sugiyamaella lignohabitans Pcs60p XP_018735233.1 3270117 D 796027 CDS AWJ20_1025 30032782 complement(3272207..3274309) A 1 NC_031672.1 Urea amidolyase; contains both urea carboxylase and allophanate hydrolase activities, degrades urea to CO2 and NH3; expression sensitive to nitrogen catabolite repression and induced by allophanate, an intermediate in allantoin degradation; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004039 - allophanate hydrolase activity [Evidence IEA]; GO_function: GO:0004039 - allophanate hydrolase activity [Evidence IMP] [PMID 6105114]; GO_function: GO:0004075 - biotin carboxylase activity [Evidence IEA]; GO_function: GO:0016884 - carbon-nitrogen ligase activity, with glutamine as amido-N-donor [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016874 - ligase activity [Evidence IEA,IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0003755 - peptidyl-prolyl cis-trans isomerase activity [Evidence IEA]; GO_function: GO:0004847 - urea carboxylase activity [Evidence IEA]; GO_function: GO:0004847 - urea carboxylase activity [Evidence IMP] [PMID 6105114]; GO_process: GO:0000256 - allantoin catabolic process [Evidence TAS] [PMID 1938916]; GO_process: GO:0006525 - arginine metabolic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA,IEA]; GO_process: GO:0006457 - protein folding [Evidence IEA]; GO_process: GO:0000413 - protein peptidyl-prolyl isomerization [Evidence IEA]; GO_process: GO:0043419 - urea catabolic process [Evidence IEA]; GO_process: GO:0043419 - urea catabolic process [Evidence IMP] [PMID 6105114]; bifunctional urea carboxylase/allophanate hydrolase 3274309 DUR1,2 30032782 DUR1,2 Sugiyamaella lignohabitans bifunctional urea carboxylase/allophanate hydrolase XP_018735234.1 3272207 R 796027 CDS AWJ20_1027 30032784 3277141..3279240 A 1 NC_031672.1 uncharacterized protein 3279240 30032784 AWJ20_1027 Sugiyamaella lignohabitans uncharacterized protein XP_018735235.1 3277141 D 796027 CDS AWJ20_1029 30032786 3280045..3282432 A 1 NC_031672.1 uncharacterized protein 3282432 30032786 AWJ20_1029 Sugiyamaella lignohabitans uncharacterized protein XP_018735236.1 3280045 D 796027 CDS AWJ20_1030 30032788 complement(3282566..3284674) A 1 NC_031672.1 Protein that negatively regulates mitotic exit; functions in a complex with Kel1p, interacts with Tem1p and Lte1p; localizes to regions of polarized growth; potential Cdc28p substrate; KEL2 has a paralog, KEL1, that arose from the whole genome duplication; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 9786949]; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 9786949]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 19053807]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 9786949]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0000747 - conjugation with cellular fusion [Evidence IGI] [PMID 9786949]; GO_process: GO:0001100 - negative regulation of exit from mitosis [Evidence IMP,IPI] [PMID 12234925]; Kel2p 3284674 KEL2 30032788 KEL2 Sugiyamaella lignohabitans Kel2p XP_018735237.1 3282566 R 796027 CDS AWJ20_1031 30032789 3286168..3289005 A 1 NC_031672.1 filamentous hemagglutinin family outer membrane protein 3289005 30032789 AWJ20_1031 Sugiyamaella lignohabitans filamentous hemagglutinin family outer membrane protein XP_018735238.1 3286168 D 796027 CDS AWJ20_1032 30032790 3289357..3290073 A 1 NC_031672.1 uncharacterized protein 3290073 30032790 AWJ20_1032 Sugiyamaella lignohabitans uncharacterized protein XP_018735239.1 3289357 D 796027 CDS AWJ20_1033 30032791 complement(3290217..3291449) A 1 NC_031672.1 one of two likely delta-12 fatty acid desaturases similar to E.nudulans OdeA; conversion of oleic acid to linoleic acid, psi factor production; allele of CaO19.118; putative delta-12 fatty acid desaturase 3291449 ODE1 30032791 ODE1 Sugiyamaella lignohabitans putative delta-12 fatty acid desaturase XP_018735240.1 3290217 R 796027 CDS AWJ20_1034 30032792 complement(3294348..3295235) A 1 NC_031672.1 Exosome non-catalytic core component; involved in 3'-5' RNA processing and degradation in both the nucleus and the cytoplasm; has similarity to E. coli RNase PH and to human hRrp43p (OIP2, EXOSC8); protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 9891085]; GO_component: GO:0000177 - cytoplasmic exosome (RNase complex) [Evidence IDA] [PMID 10465791]; GO_component: GO:0000177 - cytoplasmic exosome (RNase complex) [Evidence IDA] [PMID 19046973]; GO_component: GO:0000178 - exosome (RNase complex) [Evidence IEA]; GO_component: GO:0000176 - nuclear exosome (RNase complex) [Evidence IDA] [PMID 10465791]; GO_component: GO:0000176 - nuclear exosome (RNase complex) [Evidence IDA] [PMID 19046973]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 9891085]; GO_component: GO:0005654 - nucleoplasm [Evidence IDA] [PMID 9891085]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0000467 - exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 10508172]; GO_process: GO:0000467 - exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 12364597]; GO_process: GO:0000467 - exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 9390555]; GO_process: GO:0043628 - ncRNA 3'-end processing [Evidence IC] [PMID 10465791]; GO_process: GO:0070651 - nonfunctional rRNA decay [Evidence IC] [PMID 10465791]; GO_process: GO:0071042 - nuclear polyadenylation-dependent mRNA catabolic process [Evidence IMP] [PMID 19369424]; GO_process: GO:0071035 - nuclear polyadenylation-dependent rRNA catabolic process [Evidence IMP] [PMID 18940861]; GO_process: GO:0071038 - nuclear polyadenylation-dependent tRNA catabolic process [Evidence IDA] [PMID 15828860]; GO_process: GO:0071038 - nuclear polyadenylation-dependent tRNA catabolic process [Evidence IDA] [PMID 17643380]; GO_process: GO:0070478 - nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay [Evidence IC] [PMID 10465791]; GO_process: GO:0034427 - nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5' [Evidence IMP] [PMID 12364597]; GO_process: GO:0070481 - nuclear-transcribed mRNA catabolic process, non-stop decay [Evidence IC] [PMID 10465791]; GO_process: GO:0071051 - polyadenylation-dependent snoRNA 3'-end processing [Evidence IC] [PMID 10465791]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; Rrp43p 3295235 RRP43 30032792 RRP43 Sugiyamaella lignohabitans Rrp43p XP_018735241.1 3294348 R 796027 CDS AWJ20_1035 30032793 3295581..3295793 A 1 NC_031672.1 Mitochondrial intermembrane space protein; forms a complex with Tim8p that delivers a subset of hydrophobic proteins to the TIM22 complex for insertion into the inner membrane; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IDA] [PMID 10051608]; GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IDA] [PMID 10397776]; GO_component: GO:0042719 - mitochondrial intermembrane space protein transporter complex [Evidence IPI] [PMID 10051608]; GO_component: GO:0042719 - mitochondrial intermembrane space protein transporter complex [Evidence IDA] [PMID 12221072]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0008565 - protein transporter activity [Evidence IDA] [PMID 10051608]; GO_function: GO:0008565 - protein transporter activity [Evidence IDA,IMP] [PMID 10469659]; GO_process: GO:0045039 - protein import into mitochondrial inner membrane [Evidence IDA] [PMID 10051608]; GO_process: GO:0045039 - protein import into mitochondrial inner membrane [Evidence IDA,IMP] [PMID 10469659]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Tim13p 3295793 TIM13 30032793 TIM13 Sugiyamaella lignohabitans Tim13p XP_018735242.1 3295581 D 796027 CDS AWJ20_1036 30032794 3296249..3297190 A 1 NC_031672.1 Putative ribokinase; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0005524 - ATP binding [Evidence ISS] [PMID 1964349]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016773 - phosphotransferase activity, alcohol group as acceptor [Evidence IEA]; GO_function: GO:0004747 - ribokinase activity [Evidence IEA,IEA]; GO_function: GO:0004747 - ribokinase activity [Evidence ISS] [PMID 1964349]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0019303 - D-ribose catabolic process [Evidence IEA]; GO_process: GO:0006014 - D-ribose metabolic process [Evidence IEA]; GO_process: GO:0006014 - D-ribose metabolic process [Evidence ISS] [PMID 1964349]; GO_process: GO:0005975 - carbohydrate metabolic process [Evidence IEA]; GO_process: GO:0046835 - carbohydrate phosphorylation [Evidence IEA,IEA]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; Rbk1p 3297190 RBK1 30032794 RBK1 Sugiyamaella lignohabitans Rbk1p XP_018735243.1 3296249 D 796027 CDS AWJ20_1037 30032795 complement(3297381..3299912) A 1 NC_031672.1 Ubiquitin-specific protease; cleaves ubiquitin from ubiquitinated proteins; present in the nucleus and cytoplasm; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0008234 - cysteine-type peptidase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_function: GO:0004843 - ubiquitin-specific protease activity [Evidence IEA]; GO_function: GO:0004843 - ubiquitin-specific protease activity [Evidence TAS] [PMID 8982460]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0006508 - proteolysis [Evidence IEA]; GO_process: GO:0006511 - ubiquitin-dependent protein catabolic process [Evidence IEA]; Ubp12p 3299912 UBP12 30032795 UBP12 Sugiyamaella lignohabitans Ubp12p XP_018735244.1 3297381 R 796027 CDS AWJ20_1038 30032796 complement(3300118..3302301) A 1 NC_031672.1 Ubiquitin-specific protease; cleaves ubiquitin from ubiquitinated proteins; present in the nucleus and cytoplasm; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0008234 - cysteine-type peptidase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_function: GO:0004843 - ubiquitin-specific protease activity [Evidence IEA]; GO_function: GO:0004843 - ubiquitin-specific protease activity [Evidence TAS] [PMID 8982460]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0006508 - proteolysis [Evidence IEA]; GO_process: GO:0006511 - ubiquitin-dependent protein catabolic process [Evidence IEA]; Ubp12p 3302301 UBP12 30032796 UBP12 Sugiyamaella lignohabitans Ubp12p XP_018735245.1 3300118 R 796027 CDS AWJ20_1039 30032797 3308516..3310177 A 1 NC_031672.1 uncharacterized protein 3310177 30032797 AWJ20_1039 Sugiyamaella lignohabitans uncharacterized protein XP_018735246.1 3308516 D 796027 CDS AWJ20_1040 30032799 3311074..3313935 A 1 NC_031672.1 Protein with similarity to hect domain E3 ubiquitin-protein ligases; not essential for viability; found in association with Trf4 in TRAMP complex; GO_component: GO:0031499 - TRAMP complex [Evidence IDA] [PMID 15828860]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005628 - prospore membrane [Evidence IDA] [PMID 24390141]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence IBA,IEA]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence ISS] [PMID 9858558]; GO_process: GO:0016567 - protein ubiquitination [Evidence ISS] [PMID 9858558]; GO_process: GO:0042787 - protein ubiquitination involved in ubiquitin-dependent protein catabolic process [Evidence IBA]; putative E3 ubiquitin-protein ligase HUL4 3313935 HUL4 30032799 HUL4 Sugiyamaella lignohabitans putative E3 ubiquitin-protein ligase HUL4 XP_018735247.1 3311074 D 796027 CDS AWJ20_1041 30032800 3318069..3318983 A 1 NC_031672.1 Protein with a possible role in tRNA export; shows similarity to 6-phosphogluconolactonase non-catalytic domains but does not exhibit this enzymatic activity; homologous to Sol3p and Sol4p; SOL1 has a paralog, SOL2, that arose from the whole genome duplication; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 15454531]; GO_function: GO:0017057 - 6-phosphogluconolactonase activity [Evidence IDA] [PMID 15454531]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0005975 - carbohydrate metabolic process [Evidence IEA]; GO_process: GO:0006098 - pentose-phosphate shunt [Evidence IEA]; GO_process: GO:0006409 - tRNA export from nucleus [Evidence IGI,IMP] [PMID 15454531]; Sol1p 3318983 SOL1 30032800 SOL1 Sugiyamaella lignohabitans Sol1p XP_018735248.1 3318069 D 796027 CDS AWJ20_1042 30032801 complement(3319465..3321984) A 1 NC_031672.1 DNA helicase SRS2 3321984 SRS2 30032801 SRS2 Sugiyamaella lignohabitans DNA helicase SRS2 XP_018735249.1 3319465 R 796027 CDS AWJ20_1043 30032802 3322226..3325102 A 1 NC_031672.1 Protein that binds to DNA mismatches; forms heterodimers with Msh3p and Msh6p that bind to DNA mismatches to initiate the mismatch repair process; contains a Walker ATP-binding motif required for repair activity and involved in interstrand cross-link repair; Msh2p-Msh6p binds to and hydrolyzes ATP; GO_component: GO:0032301 - MutSalpha complex [Evidence IEA]; GO_component: GO:0032301 - MutSalpha complex [Evidence IPI] [PMID 8816473]; GO_component: GO:0032302 - MutSbeta complex [Evidence IEA]; GO_component: GO:0032302 - MutSbeta complex [Evidence IPI] [PMID 8805366]; GO_component: GO:0000228 - nuclear chromosome [Evidence IDA] [PMID 10882115]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0005524 - ATP binding [Evidence IDA] [PMID 9545323]; GO_function: GO:0016887 - ATPase activity [Evidence IDA] [PMID 9819445]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0032135 - DNA insertion or deletion binding [Evidence IDA] [PMID 8805366]; GO_function: GO:0008094 - DNA-dependent ATPase activity [Evidence IBA]; GO_function: GO:0000403 - Y-form DNA binding [Evidence IDA] [PMID 16781730]; GO_function: GO:0003684 - damaged DNA binding [Evidence IBA]; GO_function: GO:0000406 - double-strand/single-strand DNA junction binding [Evidence IDA] [PMID 16781730]; GO_function: GO:0000400 - four-way junction DNA binding [Evidence IDA] [PMID 10066781]; GO_function: GO:0000400 - four-way junction DNA binding [Evidence IDA] [PMID 9018043]; GO_function: GO:0032137 - guanine/thymine mispair binding [Evidence IDA] [PMID 8816473]; GO_function: GO:0000404 - heteroduplex DNA loop binding [Evidence IDA] [PMID 16781730]; GO_function: GO:0030983 - mismatched DNA binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0032138 - single base insertion or deletion binding [Evidence IDA] [PMID 8816473]; GO_function: GO:0032138 - single base insertion or deletion binding [Evidence IMP] [PMID 9111312]; GO_process: GO:0006310 - DNA recombination [Evidence IMP] [PMID 15920474]; GO_process: GO:0006281 - DNA repair [Evidence IEA]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0030466 - chromatin silencing at silent mating-type cassette [Evidence IGI] [PMID 16157874]; GO_process: GO:0036297 - interstrand cross-link repair [Evidence IGI] [PMID 22912599]; GO_process: GO:0043570 - maintenance of DNA repeat elements [Evidence IBA]; GO_process: GO:0006311 - meiotic gene conversion [Evidence IMP] [PMID 1334021]; GO_process: GO:0000710 - meiotic mismatch repair [Evidence IMP] [PMID 1334021]; GO_process: GO:0000710 - meiotic mismatch repair [Evidence IMP] [PMID 16702432]; GO_process: GO:0000710 - meiotic mismatch repair [Evidence IMP] [PMID 8056309]; GO_process: GO:0006298 - mismatch repair [Evidence IEA]; GO_process: GO:0006298 - mismatch repair [Evidence IMP] [PMID 10523644]; GO_process: GO:0006298 - mismatch repair [Evidence IMP] [PMID 9520271]; GO_process: GO:0006312 - mitotic recombination [Evidence IMP] [PMID 8849883]; GO_process: GO:0045128 - negative regulation of reciprocal meiotic recombination [Evidence IBA]; GO_process: GO:0006301 - postreplication repair [Evidence IBA]; GO_process: GO:0000735 - removal of nonhomologous ends [Evidence IMP] [PMID 10523644]; GO_process: GO:0000735 - removal of nonhomologous ends [Evidence IGI,IMP] [PMID 9256462]; mismatch repair ATPase MSH2 3325102 MSH2 30032802 MSH2 Sugiyamaella lignohabitans mismatch repair ATPase MSH2 XP_018735250.1 3322226 D 796027 CDS AWJ20_1044 30032803 complement(3325169..3327517) A 1 NC_031672.1 uncharacterized protein 3327517 30032803 AWJ20_1044 Sugiyamaella lignohabitans uncharacterized protein XP_018735251.1 3325169 R 796027 CDS AWJ20_1045 30032804 complement(3328183..3329025) A 1 NC_031672.1 NADPH-dependent alpha-keto amide reductase; reduces aromatic alpha-keto amides, aliphatic alpha-keto esters, and aromatic alpha-keto esters; member of the aldo-keto reductase (AKR) family; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 16622836]; GO_function: GO:0004032 - alditol:NADP+ 1-oxidoreductase activity [Evidence IDA,ISS] [PMID 11306085]; GO_function: GO:0004033 - aldo-keto reductase (NADP) activity [Evidence IDA] [PMID 17140678]; GO_function: GO:0051268 - alpha-keto amide reductase activity [Evidence IDA] [PMID 15564669]; GO_function: GO:0051269 - alpha-keto ester reductase activity [Evidence IDA] [PMID 15564669]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_process: GO:0043603 - cellular amide metabolic process [Evidence IDA] [PMID 15564669]; GO_process: GO:0006725 - cellular aromatic compound metabolic process [Evidence IDA] [PMID 16268655]; GO_process: GO:0042180 - cellular ketone metabolic process [Evidence IDA] [PMID 17140678]; GO_process: GO:0034599 - cellular response to oxidative stress [Evidence IGI] [PMID 17919749]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; aldo-keto reductase superfamily protein 3329025 30032804 AWJ20_1045 Sugiyamaella lignohabitans aldo-keto reductase superfamily protein XP_018735252.1 3328183 R 796027 CDS AWJ20_1046 30032805 3330039..3331277 A 1 NC_031672.1 Protein involved in fluoride export; nearly identical to FEX1, and deletion of both proteins results in a large increase in fluoride sensitivity compared with the single mutant; contains two FEX domains connected by a linker; part of a widespread family of conserved fluoride export proteins; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; Fex2p 3331277 FEX2 30032805 FEX2 Sugiyamaella lignohabitans Fex2p XP_018735253.1 3330039 D 796027 CDS AWJ20_1047 30032806 3332434..3334089 A 1 NC_031672.1 arrestin Aly1 related 3334089 30032806 AWJ20_1047 Sugiyamaella lignohabitans arrestin Aly1 related XP_018735254.1 3332434 D 796027 CDS AWJ20_1048 30032807 3338630..3340417 A 1 NC_031672.1 Transcription factor (bHLH) involved in interorganelle communication; contributes to communication between mitochondria, peroxisomes, and nucleus; target of Hog1p; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 10848632]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 10848632]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0046983 - protein dimerization activity [Evidence IEA]; GO_function: GO:0000981 - sequence-specific DNA binding RNA polymerase II transcription factor activity [Evidence IDA,IMP] [PMID 7493987]; GO_function: GO:0000981 - sequence-specific DNA binding RNA polymerase II transcription factor activity [Evidence IDA,IMP] [PMID 8422683]; GO_process: GO:0071400 - cellular response to oleic acid [Evidence IMP] [PMID 12393187]; GO_process: GO:0031930 - mitochondria-nucleus signaling pathway [Evidence IDA] [PMID 7493987]; GO_process: GO:0031930 - mitochondria-nucleus signaling pathway [Evidence IMP] [PMID 8422683]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 12393187]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IDA] [PMID 7493987]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 8422683]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA,IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Rtg1p 3340417 RTG1 30032807 RTG1 Sugiyamaella lignohabitans Rtg1p XP_018735255.1 3338630 D 796027 CDS AWJ20_1049 30032808 complement(3341988..3342461) A 1 NC_031672.1 succinate dehydrogenase assembly factor SDH5 3342461 EMI5 30032808 EMI5 Sugiyamaella lignohabitans succinate dehydrogenase assembly factor SDH5 XP_018735256.1 3341988 R 796027 CDS AWJ20_1050 30032810 3344004..3345086 A 1 NC_031672.1 phosphoinositide binding protein ATG18 3345086 ATG18 30032810 ATG18 Sugiyamaella lignohabitans phosphoinositide binding protein ATG18 XP_018735257.1 3344004 D 796027 CDS AWJ20_1051 30032811 3345420..3345713 A 1 NC_031672.1 Protein that functions in mitochondrial copper homeostasis; mitochondrial intermembrane space protein; essential for functional cytochrome oxidase expression; homologous to Cox17p; contains twin cysteine-x9-cysteine motifs; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 15145942]; GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 15145942]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0033108 - mitochondrial respiratory chain complex assembly [Evidence IMP] [PMID 19703468]; Cox23p 3345713 COX23 30032811 COX23 Sugiyamaella lignohabitans Cox23p XP_018735258.1 3345420 D 796027 CDS AWJ20_1052 30032812 complement(3345999..3347678) A 1 NC_031672.1 uncharacterized protein 3347678 30032812 AWJ20_1052 Sugiyamaella lignohabitans uncharacterized protein XP_018735259.1 3345999 R 796027 CDS AWJ20_1053 30032813 complement(join(3350016..3350023,3350094..3352758,3352845..3353159)) A 1 NC_031672.1 uncharacterized protein 3353159 30032813 AWJ20_1053 Sugiyamaella lignohabitans uncharacterized protein XP_018735260.1 3350016 R 796027 CDS AWJ20_1054 30032814 complement(3353748..3354650) A 1 NC_031672.1 3-hydroxyisobutyryl-CoA hydrolase; member of a family of enoyl-CoA hydratase/isomerases; non-tagged protein is detected in highly purified mitochondria in high-throughput studies; phosphorylated; mutation affects fluid-phase endocytosis; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 17054397]; GO_function: GO:0003860 - 3-hydroxyisobutyryl-CoA hydrolase activity [Evidence IEA]; GO_function: GO:0003860 - 3-hydroxyisobutyryl-CoA hydrolase activity [Evidence IDA,ISS] [PMID 12697341]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0009083 - branched-chain amino acid catabolic process [Evidence IEA]; GO_process: GO:0006635 - fatty acid beta-oxidation [Evidence IMP] [PMID 12697341]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0006574 - valine catabolic process [Evidence IEA]; Ehd3p 3354650 EHD3 30032814 EHD3 Sugiyamaella lignohabitans Ehd3p XP_018735261.1 3353748 R 796027 CDS AWJ20_1055 30032815 complement(3355304..3357169) A 1 NC_031672.1 protein channel TOM70 3357169 TOM70 30032815 TOM70 Sugiyamaella lignohabitans protein channel TOM70 XP_018735262.1 3355304 R 796027 CDS AWJ20_1056 30032816 3362467..3364380 A 1 NC_031672.1 Carnitine acetyl-CoA transferase; present in both mitochondria and peroxisomes; transfers activated acetyl groups to carnitine to form acetylcarnitine which can be shuttled across membranes; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 18427809]; GO_component: GO:0005777 - peroxisome [Evidence IEA,IEA]; GO_component: GO:0005777 - peroxisome [Evidence IDA] [PMID 18427809]; GO_function: GO:0004092 - carnitine O-acetyltransferase activity [Evidence IEA]; GO_function: GO:0004092 - carnitine O-acetyltransferase activity [Evidence IMP,ISS] [PMID 8420957]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016746 - transferase activity, transferring acyl groups [Evidence IEA,IEA]; GO_process: GO:0009437 - carnitine metabolic process [Evidence IMP] [PMID 11329169]; GO_process: GO:0006631 - fatty acid metabolic process [Evidence IEA]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; carnitine O-acetyltransferase CAT2 3364380 CAT2 30032816 CAT2 Sugiyamaella lignohabitans carnitine O-acetyltransferase CAT2 XP_018735263.1 3362467 D 796027 CDS AWJ20_1057 30032817 complement(3364563..3365957) A 1 NC_031672.1 Subunit of the NuA4 histone acetyltransferase complex; NuA4 acetylates the N-terminal tails of histones H4 and H2A; GO_component: GO:0043189 - H4/H2A histone acetyltransferase complex [Evidence IEA]; GO_component: GO:0035267 - NuA4 histone acetyltransferase complex [Evidence IPI] [PMID 15353583]; GO_component: GO:0000123 - histone acetyltransferase complex [Evidence IDA] [PMID 15353583]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006281 - DNA repair [Evidence IEA]; GO_process: GO:0006281 - DNA repair [Evidence IPI] [PMID 15353583]; GO_process: GO:0006281 - DNA repair [Evidence IDA] [PMID 16135807]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0016568 - chromatin modification [Evidence IEA]; GO_process: GO:0016573 - histone acetylation [Evidence IPI] [PMID 15353583]; GO_process: GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence IMP,IPI] [PMID 15353583]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA,IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Eaf7p 3365957 EAF7 30032817 EAF7 Sugiyamaella lignohabitans Eaf7p XP_018735264.1 3364563 R 796027 CDS AWJ20_1058 30032818 complement(3367207..3369519) A 1 NC_031672.1 uncharacterized protein 3369519 30032818 AWJ20_1058 Sugiyamaella lignohabitans uncharacterized protein XP_018735265.1 3367207 R 796027 CDS AWJ20_1059 30032819 complement(3370730..3373084) A 1 NC_031672.1 Component of the universally conserved Spt4/5 complex (DSIF complex); the complex has multiple roles in concert with RNA polymerases I and II, including regulation of transcription elongation, RNA processing, quality control, and transcription-coupled DNA repair; GO_component: GO:0032044 - DSIF complex [Evidence IPI] [PMID 9450930]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 1840633]; GO_component: GO:0033553 - rDNA heterochromatin [Evidence IDA] [PMID 16908835]; GO_function: GO:0001042 - RNA polymerase I core binding [Evidence IPI] [PMID 21467036]; GO_function: GO:0001179 - RNA polymerase I transcription factor binding [Evidence IPI] [PMID 21467036]; GO_function: GO:0000993 - RNA polymerase II core binding [Evidence IPI] [PMID 9450930]; GO_function: GO:0001181 - core RNA polymerase I binding transcription factor activity [Evidence IC] [PMID 21467036]; GO_function: GO:0000991 - core RNA polymerase II binding transcription factor activity [Evidence IGI,IMP,IPI] [PMID 9450930]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_function: GO:0019843 - rRNA binding [Evidence IDA] [PMID 21467036]; GO_process: GO:0006370 - 7-methylguanosine mRNA capping [Evidence IGI,IPI] [PMID 12556496]; GO_process: GO:0008298 - intracellular mRNA localization [Evidence IMP] [PMID 20713510]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0000398 - mRNA splicing, via spliceosome [Evidence IMP] [PMID 12556496]; GO_process: GO:2001208 - negative regulation of transcription elongation from RNA polymerase I promoter [Evidence IGI] [PMID 21467039]; GO_process: GO:2001209 - positive regulation of transcription elongation from RNA polymerase I promoter [Evidence IMP] [PMID 21467039]; GO_process: GO:0032968 - positive regulation of transcription elongation from RNA polymerase II promoter [Evidence IMP] [PMID 19365074]; GO_process: GO:0032784 - regulation of DNA-templated transcription, elongation [Evidence IEA]; GO_process: GO:2000232 - regulation of rRNA processing [Evidence IMP] [PMID 21949810]; GO_process: GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence IEA]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0090262 - regulation of transcription-coupled nucleotide-excision repair [Evidence IGI] [PMID 20042611]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; transcription elongation factor SPT5 3373084 SPT5 30032819 SPT5 Sugiyamaella lignohabitans transcription elongation factor SPT5 XP_018735266.1 3370730 R 796027 CDS AWJ20_1060 30032821 3378448..3381129 A 1 NC_031672.1 Glycogen phosphorylase required for the mobilization of glycogen; non-essential; regulated by cyclic AMP-mediated phosphorylation; expression is regulated by stress-response elements and by the HOG MAP kinase pathway; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 24146988]; GO_function: GO:0008184 - glycogen phosphorylase activity [Evidence IEA]; GO_function: GO:0008184 - glycogen phosphorylase activity [Evidence IMP] [PMID 2657401]; GO_function: GO:0004645 - phosphorylase activity [Evidence IEA,IEA]; GO_function: GO:0030170 - pyridoxal phosphate binding [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA]; GO_process: GO:0005975 - carbohydrate metabolic process [Evidence IEA,IEA]; GO_process: GO:0005980 - glycogen catabolic process [Evidence IMP] [PMID 2657401]; GO_process: GO:0005977 - glycogen metabolic process [Evidence IEA]; Gph1p 3381129 GPH1 30032821 GPH1 Sugiyamaella lignohabitans Gph1p XP_018735267.1 3378448 D 796027 CDS AWJ20_1063 30032824 3382779..3384236 A 1 NC_031672.1 Subunit beta of the cytosolic chaperonin Cct ring complex; related to Tcp1p, required for the assembly of actin and tubulins in vivo; GO_component: GO:0005832 - chaperonin-containing T-complex [Evidence IPI] [PMID 15704212]; GO_component: GO:0005832 - chaperonin-containing T-complex [Evidence IDA] [PMID 16762366]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0051082 - unfolded protein binding [Evidence IEA]; GO_function: GO:0051082 - unfolded protein binding [Evidence IDA] [PMID 16762366]; GO_process: GO:0044267 - cellular protein metabolic process [Evidence IEA]; GO_process: GO:0006457 - protein folding [Evidence IEA]; GO_process: GO:0006457 - protein folding [Evidence IDA] [PMID 16762366]; Cct2p 3384236 CCT2 30032824 CCT2 Sugiyamaella lignohabitans Cct2p XP_018735268.1 3382779 D 796027 CDS AWJ20_1064 30032825 3386690..3388498 A 1 NC_031672.1 Sorting nexin family member; required for the cytoplasm-to-vacuole targeting (Cvt) pathway and for endosomal sorting; has a Phox homology domain that binds phosphatidylinositol-3-phosphate; interacts with Snx4p; potential Cdc28p substrate; GO_component: GO:0005768 - endosome [Evidence IEA]; GO_component: GO:0005768 - endosome [Evidence IDA] [PMID 12554655]; GO_component: GO:0010008 - endosome membrane [Evidence IEA]; GO_component: GO:0019898 - extrinsic component of membrane [Evidence IDA] [PMID 12048214]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0000407 - pre-autophagosomal structure [Evidence IDA] [PMID 12048214]; GO_component: GO:0000407 - pre-autophagosomal structure [Evidence IDA] [PMID 15659643]; GO_component: GO:0000407 - pre-autophagosomal structure [Evidence IDA] [PMID 18497569]; GO_component: GO:0034045 - pre-autophagosomal structure membrane [Evidence IEA]; GO_function: GO:0008289 - lipid binding [Evidence IEA]; GO_function: GO:0035091 - phosphatidylinositol binding [Evidence IEA]; GO_function: GO:0032266 - phosphatidylinositol-3-phosphate binding [Evidence IDA] [PMID 11557775]; GO_function: GO:0032266 - phosphatidylinositol-3-phosphate binding [Evidence IDA] [PMID 12048214]; GO_process: GO:0032258 - CVT pathway [Evidence IMP] [PMID 12554655]; GO_process: GO:0006914 - autophagy [Evidence IEA]; GO_process: GO:0034498 - early endosome to Golgi transport [Evidence IGI,IMP,IPI] [PMID 12554655]; GO_process: GO:0016236 - macroautophagy [Evidence IMP] [PMID 12048214]; GO_process: GO:0000422 - mitochondrion degradation [Evidence IMP] [PMID 19793921]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Atg20p 3388498 ATG20 30032825 ATG20 Sugiyamaella lignohabitans Atg20p XP_018735269.1 3386690 D 796027 CDS AWJ20_1065 30032826 complement(3388717..3389325) A 1 NC_031672.1 FMN-dependent NAD(P)H:quinone reductase; role in apoptosis-like cell death; may be involved in quinone detoxification; expression elevated at low temperature; sequesters the Cin5p transcription factor in the cytoplasm in complex with the proteasome under reducing conditions; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 17298444]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 17298444]; GO_function: GO:0052874 - FMN reductase (NADH) activity [Evidence IEA]; GO_function: GO:0052873 - FMN reductase (NADPH) activity [Evidence IEA]; GO_function: GO:0003955 - NAD(P)H dehydrogenase (quinone) activity [Evidence IDA,IMP] [PMID 17298444]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0008134 - transcription factor binding [Evidence IDA] [PMID 19029946]; GO_process: GO:0006915 - apoptotic process [Evidence IMP] [PMID 19709309]; GO_process: GO:0034599 - cellular response to oxidative stress [Evidence IMP] [PMID 17298444]; GO_process: GO:0042994 - cytoplasmic sequestering of transcription factor [Evidence IDA] [PMID 19029946]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; Lot6p 3389325 LOT6 30032826 LOT6 Sugiyamaella lignohabitans Lot6p XP_018735270.1 3388717 R 796027 CDS AWJ20_1066 30032827 complement(join(3389614..3390938,3391554..3392241)) A 1 NC_031672.1 Component of both the SWI/SNF and RSC chromatin remodeling complexes; actin-related protein involved in transcriptional regulation; GO_component: GO:0016586 - RSC complex [Evidence IDA] [PMID 10619019]; GO_component: GO:0016586 - RSC complex [Evidence IDA] [PMID 12183366]; GO_component: GO:0016586 - RSC complex [Evidence IDA] [PMID 9844636]; GO_component: GO:0016514 - SWI/SNF complex [Evidence IDA] [PMID 18644858]; GO_component: GO:0016514 - SWI/SNF complex [Evidence IDA] [PMID 8127913]; GO_component: GO:0016514 - SWI/SNF complex [Evidence IDA] [PMID 9726966]; GO_component: GO:0016514 - SWI/SNF complex [Evidence IDA] [PMID 9844636]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11011149]; GO_function: GO:0015616 - DNA translocase activity [Evidence IDA] [PMID 12183366]; GO_function: GO:0015616 - DNA translocase activity [Evidence IDA] [PMID 16455496]; GO_function: GO:0015616 - DNA translocase activity [Evidence IDA] [PMID 17188033]; GO_function: GO:0015616 - DNA translocase activity [Evidence IDA] [PMID 17918861]; GO_process: GO:0043044 - ATP-dependent chromatin remodeling [Evidence IDA,IDA] [PMID 12183366]; GO_process: GO:0016568 - chromatin modification [Evidence IEA]; GO_process: GO:0006325 - chromatin organization [Evidence IGI] [PMID 12805231]; GO_process: GO:0006337 - nucleosome disassembly [Evidence IDA] [PMID 16492771]; GO_process: GO:0042766 - nucleosome mobilization [Evidence IDA] [PMID 17496903]; GO_process: GO:0016584 - nucleosome positioning [Evidence IMP] [PMID 21343911]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 9726966]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006368 - transcription elongation from RNA polymerase II promoter [Evidence IDA] [PMID 17081996]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Arp9p 3392241 ARP9 30032827 ARP9 Sugiyamaella lignohabitans Arp9p XP_018735271.1 3389614 R 796027 CDS AWJ20_1067 30032828 complement(3392817..3393101) A 1 NC_031672.1 uncharacterized protein 3393101 30032828 AWJ20_1067 Sugiyamaella lignohabitans uncharacterized protein XP_018735272.1 3392817 R 796027 CDS AWJ20_1068 30032829 3394442..3395701 A 1 NC_031672.1 Acetyltransferase; required for establishment of sister chromatid cohesion; acetylates Mps3p to regulate nuclear organization; modifies Smc3p at replication forks and Mcd1p in response to dsDNA breaks; phosphorylated by three kinases (Cdc28p, Cdc7p, Mck1p) to generate pair of phosphates spaced precisely for recognition by ubiquitin ligase SCF-Cdc4; mutations in human homolog ESCO2 cause Roberts syndrome; relative distribution to nucleus increases upon DNA replication stress; GO_component: GO:0000785 - chromatin [Evidence IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0000790 - nuclear chromatin [Evidence IPI] [PMID 9990856]; GO_component: GO:0043596 - nuclear replication fork [Evidence IDA] [PMID 16962805]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_function: GO:0016407 - acetyltransferase activity [Evidence IDA] [PMID 11864574]; GO_function: GO:0016407 - acetyltransferase activity [Evidence IDA] [PMID 18614053]; GO_function: GO:0016407 - acetyltransferase activity [Evidence IDA,IMP] [PMID 22593213]; GO_function: GO:0003682 - chromatin binding [Evidence IDA] [PMID 9990856]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016746 - transferase activity, transferring acyl groups [Evidence IEA]; GO_process: GO:0006281 - DNA repair [Evidence IDA] [PMID 11448778]; GO_process: GO:0006260 - DNA replication [Evidence IEA]; GO_process: GO:0006260 - DNA replication [Evidence IMP] [PMID 9990856]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051276 - chromosome organization [Evidence IMP] [PMID 19948494]; GO_process: GO:0006302 - double-strand break repair [Evidence IMP] [PMID 11448778]; GO_process: GO:0034087 - establishment of mitotic sister chromatid cohesion [Evidence IGI] [PMID 16934511]; GO_process: GO:0034087 - establishment of mitotic sister chromatid cohesion [Evidence IMP] [PMID 9990855]; GO_process: GO:0034087 - establishment of mitotic sister chromatid cohesion [Evidence IMP] [PMID 9990856]; GO_process: GO:0018393 - internal peptidyl-lysine acetylation [Evidence IDA] [PMID 18614053]; GO_process: GO:0007076 - mitotic chromosome condensation [Evidence IMP] [PMID 19948494]; GO_process: GO:0034421 - post-translational protein acetylation [Evidence IEA]; GO_process: GO:0006275 - regulation of DNA replication [Evidence IEA]; GO_process: GO:0006275 - regulation of DNA replication [Evidence IGI] [PMID 9990855]; GO_process: GO:0007088 - regulation of mitosis [Evidence IMP] [PMID 9990855]; GO_process: GO:0007062 - sister chromatid cohesion [Evidence IEA]; GO_process: GO:0070058 - tRNA gene clustering [Evidence IMP] [PMID 19948494]; GO_process: GO:0032200 - telomere organization [Evidence IMP] [PMID 19948494]; Eco1p 3395701 ECO1 30032829 ECO1 Sugiyamaella lignohabitans Eco1p XP_018735273.1 3394442 D 796027 CDS AWJ20_1069 30032830 complement(3396981..3399335) A 1 NC_031672.1 Para-aminobenzoate (PABA) synthase; has similarity to Escherichia coli PABA synthase components PabA and PabB; required for the synthesis of para-aminobenzoic acid, an important intermediate for folate and ubiquinone Q biosynthesis; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0046820 - 4-amino-4-deoxychorismate synthase activity [Evidence IEA]; GO_function: GO:0046820 - 4-amino-4-deoxychorismate synthase activity [Evidence IMP,ISS] [PMID 8346682]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016833 - oxo-acid-lyase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0009058 - biosynthetic process [Evidence IEA]; GO_process: GO:0046656 - folic acid biosynthetic process [Evidence IEA]; GO_process: GO:0006541 - glutamine metabolic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA,IEA]; GO_process: GO:0008153 - para-aminobenzoic acid biosynthetic process [Evidence IMP] [PMID 8346682]; GO_process: GO:0046654 - tetrahydrofolate biosynthetic process [Evidence IEA]; 4-amino-4-deoxychorismate synthase 3399335 ABZ1 30032830 ABZ1 Sugiyamaella lignohabitans 4-amino-4-deoxychorismate synthase XP_018735274.1 3396981 R 796027 CDS AWJ20_1070 30032832 3400047..3400463 A 1 NC_031672.1 Mitochondrial ribosomal protein of the large subunit; homolog of human Bcl-2 interacting protein BMRP; GO_component: GO:0005762 - mitochondrial large ribosomal subunit [Evidence IPI] [PMID 12392552]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IPI] [PMID 12392552]; GO_process: GO:0032543 - mitochondrial translation [Evidence IC] [PMID 12392552]; mitochondrial 54S ribosomal protein YmL27 3400463 MRPL27 30032832 MRPL27 Sugiyamaella lignohabitans mitochondrial 54S ribosomal protein YmL27 XP_018735275.1 3400047 D 796027 CDS AWJ20_1071 30032833 3402975..3404099 A 1 NC_031672.1 potential mitochondrial NADH-Ubiquinone Oxidoreductase Complex I subunit similar to N. crassa and mammalian 40kd subunits; allele of CaO19.1682; putative mitochondrial Complex I, 40kd subunit 3404099 30032833 AWJ20_1071 Sugiyamaella lignohabitans putative mitochondrial Complex I, 40kd subunit XP_018735276.1 3402975 D 796027 CDS AWJ20_1072 30032834 complement(3404351..3407488) A 1 NC_031672.1 Phosphatidylinositol 4-kinase; catalyzes first step in the biosynthesis of phosphatidylinositol-4,5-biphosphate; may control cytokinesis through the actin cytoskeleton; may control nonselective autophagy and mitophagy through trafficking of Atg9p; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 10587649]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 16365163]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 8194527]; GO_component: GO:0005802 - trans-Golgi network [Evidence IDA] [PMID 10587649]; GO_component: GO:0005802 - trans-Golgi network [Evidence IDA] [PMID 16365163]; GO_function: GO:0004430 - 1-phosphatidylinositol 4-kinase activity [Evidence IEA,IEA]; GO_function: GO:0004430 - 1-phosphatidylinositol 4-kinase activity [Evidence IMP] [PMID 10587649]; GO_function: GO:0004430 - 1-phosphatidylinositol 4-kinase activity [Evidence IDA] [PMID 8194527]; GO_function: GO:0004430 - 1-phosphatidylinositol 4-kinase activity [Evidence IDA] [PMID 8248783]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016773 - phosphotransferase activity, alcohol group as acceptor [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016772 - transferase activity, transferring phosphorus-containing groups [Evidence IEA]; GO_process: GO:0006661 - phosphatidylinositol biosynthetic process [Evidence IEA]; GO_process: GO:0046854 - phosphatidylinositol phosphorylation [Evidence IEA]; GO_process: GO:0046854 - phosphatidylinositol phosphorylation [Evidence IMP] [PMID 10587649]; GO_process: GO:0046854 - phosphatidylinositol phosphorylation [Evidence IDA] [PMID 8194527]; GO_process: GO:0046854 - phosphatidylinositol phosphorylation [Evidence IDA] [PMID 8248783]; GO_process: GO:0048015 - phosphatidylinositol-mediated signaling [Evidence IEA]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; 1-phosphatidylinositol 4-kinase 3407488 PIK1 30032834 PIK1 Sugiyamaella lignohabitans 1-phosphatidylinositol 4-kinase XP_018735277.1 3404351 R 796027 CDS AWJ20_1073 30032835 complement(3412715..3415354) A 1 NC_031672.1 uncharacterized protein 3415354 30032835 AWJ20_1073 Sugiyamaella lignohabitans uncharacterized protein XP_018735278.1 3412715 R 796027 CDS AWJ20_1074 30032836 3417223..3418656 A 1 NC_031672.1 Vacuolar protein sorting (VPS) protein; required for cytoplasm to vacuole targeting of proteins; VPS62 has a paralog, TDA6, that arose from the whole genome duplication; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 19001347]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006623 - protein targeting to vacuole [Evidence IMP] [PMID 12134085]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Vps62p 3418656 VPS62 30032836 VPS62 Sugiyamaella lignohabitans Vps62p XP_018735279.1 3417223 D 796027 CDS AWJ20_1075 30032837 complement(3419210..3420784) A 1 NC_031672.1 Plasma membrane low glucose sensor, regulates glucose transport; contains 12 predicted transmembrane segments and a long C-terminal tail required for induction of hexose transporters; also senses fructose and mannose; SNF3 has a paralog, RGT2, that arose from the whole genome duplication; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 2406560]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 24124599]; GO_function: GO:0005536 - glucose binding [Evidence TAS] [PMID 10477308]; GO_function: GO:0005355 - glucose transmembrane transporter activity [Evidence TAS] [PMID 10477308]; GO_function: GO:0004872 - receptor activity [Evidence TAS] [PMID 10477308]; GO_function: GO:0022891 - substrate-specific transmembrane transporter activity [Evidence IEA]; GO_function: GO:0022857 - transmembrane transporter activity [Evidence IEA]; GO_function: GO:0005215 - transporter activity [Evidence IEA]; GO_process: GO:0008643 - carbohydrate transport [Evidence IEA]; GO_process: GO:0051594 - detection of glucose [Evidence IGI,IMP] [PMID 8901598]; GO_process: GO:0015755 - fructose transport [Evidence IMP] [PMID 2046678]; GO_process: GO:0015758 - glucose transport [Evidence IMP] [PMID 2046678]; GO_process: GO:0015758 - glucose transport [Evidence IGI] [PMID 9564039]; GO_process: GO:0015761 - mannose transport [Evidence IMP] [PMID 2046678]; GO_process: GO:0045835 - negative regulation of meiosis [Evidence IMP] [PMID 18616605]; GO_process: GO:0007165 - signal transduction [Evidence TAS] [PMID 10477308]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; Snf3p 3420784 SNF3 30032837 SNF3 Sugiyamaella lignohabitans Snf3p XP_018735280.1 3419210 R 796027 CDS AWJ20_1076 30032838 3425536..3426597 A 1 NC_031672.1 Polysialic acid capsule expression protein 3426597 30032838 AWJ20_1076 Sugiyamaella lignohabitans Polysialic acid capsule expression protein XP_018735281.1 3425536 D 796027 CDS AWJ20_1077 30032839 complement(3427193..3430606) A 1 NC_031672.1 uncharacterized protein 3430606 30032839 AWJ20_1077 Sugiyamaella lignohabitans uncharacterized protein XP_018735282.1 3427193 R 796027 CDS AWJ20_1078 30032840 3431575..3434760 A 1 NC_031672.1 Subunit of the conserved chromosomal passenger complex (CPC); complex regulates kinetochore-microtubule attachments, activation of the spindle tension checkpoint, and mitotic spindle disassembly; other complex members are Ipl1p, Bir1p, and Nbl1p; GO_component: GO:0005694 - chromosome [Evidence IEA]; GO_component: GO:0032133 - chromosome passenger complex [Evidence IDA] [PMID 19158380]; GO_component: GO:0000775 - chromosome, centromeric region [Evidence IEA]; GO_component: GO:0000777 - condensed chromosome kinetochore [Evidence IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA]; GO_component: GO:0000776 - kinetochore [Evidence IEA]; GO_component: GO:0005828 - kinetochore microtubule [Evidence IDA] [PMID 11724818]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005819 - spindle [Evidence IEA]; GO_component: GO:0005876 - spindle microtubule [Evidence IDA] [PMID 11724818]; GO_component: GO:0051233 - spindle midzone [Evidence IDA] [PMID 12566427]; GO_function: GO:0030295 - protein kinase activator activity [Evidence IMP,IPI] [PMID 10385519]; GO_process: GO:0007059 - chromosome segregation [Evidence IEA]; GO_process: GO:0007059 - chromosome segregation [Evidence TAS] [PMID 11724818]; GO_process: GO:0006468 - protein phosphorylation [Evidence IMP,IPI] [PMID 10385519]; GO_process: GO:0006468 - protein phosphorylation [Evidence IDA] [PMID 17504936]; GO_process: GO:0032465 - regulation of cytokinesis [Evidence IMP] [PMID 16615892]; Sli15p 3434760 SLI15 30032840 SLI15 Sugiyamaella lignohabitans Sli15p XP_018735283.1 3431575 D 796027 CDS AWJ20_1079 30032841 complement(3434860..3436032) A 1 NC_031672.1 TPR-containing co-chaperone; binds both Hsp82p (Hsp90) and Ssa1p (Hsp70) and stimulates the ATPase activity of SSA1, ts mutants reduce Hsp82p function while over expression suppresses the phenotypes of an HSP82 ts allele and a cpr7 deletion; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IPI] [PMID 9819421]; GO_function: GO:0030544 - Hsp70 protein binding [Evidence IDA] [PMID 15044454]; GO_function: GO:0051879 - Hsp90 protein binding [Evidence IDA] [PMID 12788914]; GO_process: GO:0006457 - protein folding [Evidence IPI] [PMID 15044454]; GO_process: GO:0006457 - protein folding [Evidence IGI] [PMID 9819421]; Cns1p 3436032 CNS1 30032841 CNS1 Sugiyamaella lignohabitans Cns1p XP_018735284.1 3434860 R 796027 CDS AWJ20_1080 30032843 complement(3436422..3438761) A 1 NC_031672.1 Mediator of RNA polymerase II transcription subunit 12 3438761 30032843 AWJ20_1080 Sugiyamaella lignohabitans Mediator of RNA polymerase II transcription subunit 12 XP_018735285.1 3436422 R 796027 CDS AWJ20_1081 30032844 complement(3438988..3441453) A 1 NC_031672.1 Subunit of the RNA polymerase II mediator complex; associates with core polymerase subunits to form the RNA polymerase II holoenzyme; essential for transcriptional regulation; involved in glucose repression; GO_component: GO:0016592 - mediator complex [Evidence IEA]; GO_component: GO:0016592 - mediator complex [Evidence IDA] [PMID 11383511]; GO_component: GO:0016592 - mediator complex [Evidence IDA] [PMID 12200444]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0001105 - RNA polymerase II transcription coactivator activity [Evidence IDA,IMP] [PMID 20505076]; GO_function: GO:0001104 - RNA polymerase II transcription cofactor activity [Evidence IEA]; GO_process: GO:0000122 - negative regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 16109375]; GO_process: GO:0000411 - positive regulation of transcription by galactose [Evidence IMP] [PMID 15601835]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 15601835]; GO_process: GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence IEA]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Srb8p 3441453 SRB8 30032844 SRB8 Sugiyamaella lignohabitans Srb8p XP_018735286.1 3438988 R 796027 CDS AWJ20_1082 30032845 3442944..3443234 A 1 NC_031672.1 uncharacterized protein 3443234 30032845 AWJ20_1082 Sugiyamaella lignohabitans uncharacterized protein XP_018735287.1 3442944 D 796027 CDS AWJ20_1083 30032846 complement(3443727..3444152) A 1 NC_031672.1 Proliferating cell nuclear antigen (PCNA); functions as the sliding clamp for DNA polymerase delta; may function as a docking site for other proteins required for mitotic and meiotic chromosomal DNA replication and for DNA repair; GO_component: GO:0043626 - PCNA complex [Evidence IEA]; GO_component: GO:0043626 - PCNA complex [Evidence IPI] [PMID 8001157]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 15282802]; GO_component: GO:0005657 - replication fork [Evidence IDA] [PMID 12015307]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0030337 - DNA polymerase processivity factor activity [Evidence IEA]; GO_function: GO:0030337 - DNA polymerase processivity factor activity [Evidence IDA] [PMID 18635534]; GO_function: GO:0030337 - DNA polymerase processivity factor activity [Evidence IDA] [PMID 2902631]; GO_process: GO:0006281 - DNA repair [Evidence IEA]; GO_process: GO:0006260 - DNA replication [Evidence IEA]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0030466 - chromatin silencing at silent mating-type cassette [Evidence IGI] [PMID 10545450]; GO_process: GO:0030466 - chromatin silencing at silent mating-type cassette [Evidence IMP] [PMID 16157874]; GO_process: GO:0006348 - chromatin silencing at telomere [Evidence IMP] [PMID 16157874]; GO_process: GO:0070987 - error-free translesion synthesis [Evidence IGI] [PMID 19264809]; GO_process: GO:0034087 - establishment of mitotic sister chromatid cohesion [Evidence IGI] [PMID 16934511]; GO_process: GO:0006273 - lagging strand elongation [Evidence IDA,IPI] [PMID 7673186]; GO_process: GO:0006272 - leading strand elongation [Evidence IDA] [PMID 1682321]; GO_process: GO:0035753 - maintenance of DNA trinucleotide repeats [Evidence IGI,IMP] [PMID 16079237]; GO_process: GO:0000710 - meiotic mismatch repair [Evidence IGI,IMP] [PMID 18245822]; GO_process: GO:0006298 - mismatch repair [Evidence IMP,IPI] [PMID 8858149]; GO_process: GO:0006298 - mismatch repair [Evidence IGI] [PMID 8910404]; GO_process: GO:0006298 - mismatch repair [Evidence IGI] [PMID 9504910]; GO_process: GO:0000278 - mitotic cell cycle [Evidence IGI] [PMID 7516465]; GO_process: GO:0007064 - mitotic sister chromatid cohesion [Evidence IGI,IPI] [PMID 16934511]; GO_process: GO:0006289 - nucleotide-excision repair [Evidence IMP] [PMID 9806417]; GO_process: GO:1902394 - positive regulation of exodeoxyribonuclease activity [Evidence IDA] [PMID 12192046]; GO_process: GO:1903022 - positive regulation of phosphodiesterase activity, acting on 3'-phosphoglycolate-terminated DNA strands [Evidence IDA] [PMID 12192046]; GO_process: GO:0006301 - postreplication repair [Evidence IGI,IMP] [PMID 8790390]; GO_process: GO:0006275 - regulation of DNA replication [Evidence IEA]; proliferating cell nuclear antigen 3444152 POL30 30032846 POL30 Sugiyamaella lignohabitans proliferating cell nuclear antigen XP_018735288.1 3443727 R 796027 CDS AWJ20_1084 30032847 complement(3445026..3447983) A 1 NC_031672.1 Protein involved in DNA replication; component of the Mcm2-7 hexameric helicase complex that binds chromatin as a part of the pre-replicative complex; forms a subcomplex with Mcm4p and Mcm7p; GO_component: GO:0031261 - DNA replication preinitiation complex [Evidence IDA] [PMID 9554851]; GO_component: GO:0042555 - MCM complex [Evidence IEA]; GO_component: GO:0042555 - MCM complex [Evidence IDA] [PMID 12480933]; GO_component: GO:0097373 - MCM core complex [Evidence IDA] [PMID 13679365]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 10704410]; GO_component: GO:0005656 - nuclear pre-replicative complex [Evidence IDA] [PMID 16824194]; GO_component: GO:0005656 - nuclear pre-replicative complex [Evidence IDA] [PMID 9335335]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 10704410]; GO_component: GO:0031298 - replication fork protection complex [Evidence IDA] [PMID 16531994]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0043140 - ATP-dependent 3'-5' DNA helicase activity [Evidence IDA] [PMID 13679365]; GO_function: GO:0004003 - ATP-dependent DNA helicase activity [Evidence IDA] [PMID 15723534]; GO_function: GO:1990163 - ATP-dependent four-way junction helicase activity [Evidence IDA] [PMID 13679365]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0003678 - DNA helicase activity [Evidence IEA]; GO_function: GO:0003678 - DNA helicase activity [Evidence IDA] [PMID 18657510]; GO_function: GO:0003688 - DNA replication origin binding [Evidence IDA] [PMID 11756674]; GO_function: GO:0003688 - DNA replication origin binding [Evidence IDA] [PMID 16824194]; GO_function: GO:0004386 - helicase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0017116 - single-stranded DNA-dependent ATP-dependent DNA helicase activity [Evidence IDA] [PMID 18657510]; GO_function: GO:0043142 - single-stranded DNA-dependent ATPase activity [Evidence IDA] [PMID 15723534]; GO_process: GO:0006260 - DNA replication [Evidence IEA,IEA]; GO_process: GO:0006270 - DNA replication initiation [Evidence IEA]; GO_process: GO:0006270 - DNA replication initiation [Evidence IPI] [PMID 9335335]; GO_process: GO:0006271 - DNA strand elongation involved in DNA replication [Evidence IMP] [PMID 10834843]; GO_process: GO:0006268 - DNA unwinding involved in DNA replication [Evidence IDA] [PMID 13679365]; GO_process: GO:0006268 - DNA unwinding involved in DNA replication [Evidence IDA] [PMID 15723534]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0000727 - double-strand break repair via break-induced replication [Evidence IMP] [PMID 20516198]; GO_process: GO:0033260 - nuclear cell cycle DNA replication [Evidence IMP] [PMID 10834843]; GO_process: GO:0006267 - pre-replicative complex assembly involved in nuclear cell cycle DNA replication [Evidence IDA] [PMID 16824194]; MCM DNA helicase complex subunit MCM6 3447983 MCM6 30032847 MCM6 Sugiyamaella lignohabitans MCM DNA helicase complex subunit MCM6 XP_018735289.1 3445026 R 796027 CDS AWJ20_1085 30032848 complement(3449216..3449503) A 1 NC_031672.1 hypothetical protein that associates with ribosomes; protein abundance increases in response to DNA replication stress; TMA10 has a paralog, STF2, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005840 - ribosome [Evidence IDA] [PMID 16702403]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; Tma10p 3449503 TMA10 30032848 TMA10 Sugiyamaella lignohabitans Tma10p XP_018735290.1 3449216 R 796027 CDS AWJ20_1086 30032849 3453443..3453865 A 1 NC_031672.1 Beta' regulatory subunit of casein kinase 2 (CK2); a Ser/Thr protein kinase with roles in cell growth and proliferation; CK2, comprised of CKA1, CKA2, CKB1 and CKB2, has many substrates including transcription factors and all RNA polymerase; GO_component: GO:0032545 - CURI complex [Evidence IDA] [PMID 17452446]; GO_component: GO:0034456 - UTP-C complex [Evidence IDA] [PMID 17515605]; GO_component: GO:0005956 - protein kinase CK2 complex [Evidence IEA]; GO_component: GO:0005956 - protein kinase CK2 complex [Evidence IDA] [PMID 8135547]; GO_function: GO:0019887 - protein kinase regulator activity [Evidence IEA]; GO_function: GO:0019887 - protein kinase regulator activity [Evidence IMP] [PMID 11827175]; GO_function: GO:0019887 - protein kinase regulator activity [Evidence IPI] [PMID 8135547]; GO_function: GO:0030291 - protein serine/threonine kinase inhibitor activity [Evidence IDA] [PMID 18265947]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IDA] [PMID 11551505]; GO_process: GO:0006468 - protein phosphorylation [Evidence IMP] [PMID 16607517]; GO_process: GO:0006468 - protein phosphorylation [Evidence IDA] [PMID 16952051]; GO_process: GO:0045859 - regulation of protein kinase activity [Evidence IEA]; GO_process: GO:0006356 - regulation of transcription from RNA polymerase I promoter [Evidence IDA] [PMID 11551505]; GO_process: GO:0006359 - regulation of transcription from RNA polymerase III promoter [Evidence IDA] [PMID 11551505]; casein kinase 2 regulatory subunit CKB2 3453865 CKB2 30032849 CKB2 Sugiyamaella lignohabitans casein kinase 2 regulatory subunit CKB2 XP_018735291.1 3453443 D 796027 CDS AWJ20_1087 30032850 3454858..3456588 A 1 NC_031672.1 uncharacterized protein 3456588 30032850 AWJ20_1087 Sugiyamaella lignohabitans uncharacterized protein XP_018735292.1 3454858 D 796027 CDS AWJ20_1088 30032851 complement(3456975..3458468) A 1 NC_031672.1 Aromatic aminotransferase I; expression is regulated by general control of amino acid biosynthesis; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0047536 - 2-aminoadipate transaminase activity [Evidence IEA]; GO_function: GO:0047536 - 2-aminoadipate transaminase activity [Evidence IDA] [PMID 19342587]; GO_function: GO:0080130 - L-phenylalanine:2-oxoglutarate aminotransferase activity [Evidence IEA]; GO_function: GO:0008793 - aromatic-amino-acid:2-oxoglutarate aminotransferase activity [Evidence IEA]; GO_function: GO:0008793 - aromatic-amino-acid:2-oxoglutarate aminotransferase activity [Evidence IDA] [PMID 9491082]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0030170 - pyridoxal phosphate binding [Evidence IEA]; GO_function: GO:0008483 - transaminase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0019509 - L-methionine salvage from methylthioadenosine [Evidence IEA]; GO_process: GO:0009094 - L-phenylalanine biosynthetic process [Evidence IEA]; GO_process: GO:0009072 - aromatic amino acid family metabolic process [Evidence IGI,IMP] [PMID 9491083]; GO_process: GO:0009058 - biosynthetic process [Evidence IEA]; GO_process: GO:0019878 - lysine biosynthetic process via aminoadipic acid [Evidence IEA]; GO_process: GO:0006571 - tyrosine biosynthetic process [Evidence IEA]; bifunctional 2-aminoadipate transaminase/aromatic-amino-acid:2-oxoglutarate transaminase 3458468 ARO8 30032851 ARO8 Sugiyamaella lignohabitans bifunctional 2-aminoadipate transaminase/aromatic-amino-acid:2-oxoglutarate transaminase XP_018735293.1 3456975 R 796027 CDS AWJ20_1089 30032852 complement(3460751..3462055) A 1 NC_031672.1 Activator of anaphase-promoting complex/cyclosome (APC/C); cell-cycle regulated; directs ubiquitination of cyclins resulting in mitotic exit; targets the APC/C to specific substrates including Cdc20p, Ase1p, Cin8p and Fin1p; GO_component: GO:0005680 - anaphase-promoting complex [Evidence IPI] [PMID 9831566]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 12456658]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 12456658]; GO_function: GO:0010997 - anaphase-promoting complex binding [Evidence IDA] [PMID 15916961]; GO_function: GO:0030332 - cyclin binding [Evidence IDA] [PMID 11566880]; GO_function: GO:0097027 - ubiquitin-protein transferase activator activity [Evidence IDA] [PMID 19362536]; GO_process: GO:0007092 - activation of mitotic anaphase-promoting complex activity [Evidence IMP] [PMID 9334304]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0007067 - mitotic nuclear division [Evidence IEA]; GO_process: GO:0010697 - negative regulation of spindle pole body separation [Evidence IGI,IMP] [PMID 16688214]; GO_process: GO:2000600 - positive regulation of cyclin catabolic process [Evidence IDA] [PMID 17178718]; GO_process: GO:0045842 - positive regulation of mitotic metaphase/anaphase transition [Evidence IMP] [PMID 9831566]; GO_process: GO:2000060 - positive regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process [Evidence IDA] [PMID 18172166]; GO_process: GO:0008361 - regulation of cell size [Evidence IMP] [PMID 12089449]; Cdh1p 3462055 CDH1 30032852 CDH1 Sugiyamaella lignohabitans Cdh1p XP_018735294.1 3460751 R 796027 CDS AWJ20_1090 30032854 3464974..3465480 A 1 NC_031672.1 Component of the septin ring that is required for cytokinesis; septins are GTP-binding proteins that assemble into rod-like hetero-oligomers that can associate with other rods to form filaments; septin rings at the mother-bud neck act as scaffolds for recruiting cell division factors and as barriers to prevent diffusion of specific proteins; undergoes sumoylation and phosphorylation during mitosis; protein abundance increases in response to DNA replication stress; GO_component: GO:0005935 - cellular bud neck [Evidence IEA]; GO_component: GO:0000144 - cellular bud neck septin ring [Evidence IDA] [PMID 17603111]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 19053807]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005628 - prospore membrane [Evidence IDA] [PMID 24390141]; GO_component: GO:0031105 - septin complex [Evidence IEA]; GO_function: GO:0005525 - GTP binding [Evidence IEA,IEA]; GO_function: GO:0005525 - GTP binding [Evidence IDA] [PMID 14597621]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0000082 - G1/S transition of mitotic cell cycle [Evidence IGI] [PMID 18431499]; GO_process: GO:0000915 - actomyosin contractile ring assembly [Evidence IMP] [PMID 17603111]; GO_process: GO:0000917 - barrier septum assembly [Evidence IMP] [PMID 17603111]; GO_process: GO:0007049 - cell cycle [Evidence IEA,IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0032186 - cellular bud neck septin ring organization [Evidence IMP] [PMID 12636916]; GO_process: GO:0010458 - exit from mitosis [Evidence IMP] [PMID 12699621]; GO_process: GO:0000921 - septin ring assembly [Evidence IGI] [PMID 17603111]; septin SHS1 3465480 SHS1 30032854 SHS1 Sugiyamaella lignohabitans septin SHS1 XP_018735295.1 3464974 D 796027 CDS AWJ20_1091 30032855 complement(3465823..3466962) A 1 NC_031672.1 Mitochondrial tryptophanyl-tRNA synthetase; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IMP] [PMID 2999114]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004812 - aminoacyl-tRNA ligase activity [Evidence IEA,IEA]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_function: GO:0004830 - tryptophan-tRNA ligase activity [Evidence IEA,IEA]; GO_function: GO:0004830 - tryptophan-tRNA ligase activity [Evidence IMP,ISA] [PMID 2999114]; GO_process: GO:0070183 - mitochondrial tryptophanyl-tRNA aminoacylation [Evidence IMP] [PMID 2999114]; GO_process: GO:0006418 - tRNA aminoacylation for protein translation [Evidence IEA]; GO_process: GO:0006412 - translation [Evidence IEA]; GO_process: GO:0006436 - tryptophanyl-tRNA aminoacylation [Evidence IEA]; tryptophan--tRNA ligase MSW1 3466962 MSW1 30032855 MSW1 Sugiyamaella lignohabitans tryptophan--tRNA ligase MSW1 XP_018735296.1 3465823 R 796027 CDS AWJ20_1092 30032856 3468062..3468802 A 1 NC_031672.1 uncharacterized protein 3468802 30032856 AWJ20_1092 Sugiyamaella lignohabitans uncharacterized protein XP_018735297.1 3468062 D 796027 CDS AWJ20_1093 30032857 complement(3468924..3470525) A 1 NC_031672.1 Mitochondrial peripheral inner membrane protein; contains a FAD cofactor in a domain exposed in the intermembrane space; exhibits redox activity in vitro; likely participates in ligation of heme to acytochromes c and c1 (Cyc1p and Cyt1p); GO_component: GO:0031314 - extrinsic component of mitochondrial inner membrane [Evidence IDA] [PMID 16207709]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 11914276]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IDA] [PMID 16207709]; GO_process: GO:0018063 - cytochrome c-heme linkage [Evidence IGI] [PMID 14514677]; GO_process: GO:0018063 - cytochrome c-heme linkage [Evidence IGI] [PMID 16207709]; GO_process: GO:0007006 - mitochondrial membrane organization [Evidence IMP] [PMID 11488609]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; Cyc2p 3470525 CYC2 30032857 CYC2 Sugiyamaella lignohabitans Cyc2p XP_018735298.1 3468924 R 796027 CDS AWJ20_1094 30032858 3471697..3472113 A 1 NC_031672.1 Component of cytosolic iron-sulfur protein assembly (CIA) machinery; acts at a late step of Fe-S cluster assembly; forms the CIA targeting complex with Cia2p and Met18p that directs Fe-S cluster incorporation into a subset of proteins involved in methionine biosynthesis, DNA replication and repair, transcription, and telomere maintenance; contains WD40 repeats; ortholog of human Ciao1 protein; GO_component: GO:0097361 - CIA complex [Evidence IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14690591]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 16314508]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14690591]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 16314508]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0016226 - iron-sulfur cluster assembly [Evidence IEA,IEA]; GO_process: GO:0016226 - iron-sulfur cluster assembly [Evidence IGI,IMP] [PMID 17937914]; GO_process: GO:0002098 - tRNA wobble uridine modification [Evidence IMP] [PMID 18755837]; Cia1p 3472113 CIA1 30032858 CIA1 Sugiyamaella lignohabitans Cia1p XP_018735299.1 3471697 D 796027 CDS AWJ20_1095 30032859 3472242..3472808 A 1 NC_031672.1 Component of cytosolic iron-sulfur protein assembly (CIA) machinery; acts at a late step of Fe-S cluster assembly; forms the CIA targeting complex with Cia2p and Met18p that directs Fe-S cluster incorporation into a subset of proteins involved in methionine biosynthesis, DNA replication and repair, transcription, and telomere maintenance; contains WD40 repeats; ortholog of human Ciao1 protein; GO_component: GO:0097361 - CIA complex [Evidence IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14690591]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 16314508]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14690591]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 16314508]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0016226 - iron-sulfur cluster assembly [Evidence IEA,IEA]; GO_process: GO:0016226 - iron-sulfur cluster assembly [Evidence IGI,IMP] [PMID 17937914]; GO_process: GO:0002098 - tRNA wobble uridine modification [Evidence IMP] [PMID 18755837]; Cia1p 3472808 CIA1 30032859 CIA1 Sugiyamaella lignohabitans Cia1p XP_018735300.1 3472242 D 796027 CDS AWJ20_1096 30032860 complement(3472957..3473883) A 1 NC_031672.1 COMPASS subunit protein SWD1 3473883 SWD1 30032860 SWD1 Sugiyamaella lignohabitans COMPASS subunit protein SWD1 XP_018735301.1 3472957 R 796027 CDS AWJ20_1097 30032861 3475079..3477085 A 1 NC_031672.1 Nucleolar protein involved in pre-rRNA processing; depletion causes severely decreased 18S rRNA levels; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IDA] [PMID 15056729]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0006364 - rRNA processing [Evidence IPI] [PMID 14690591]; GO_process: GO:0006364 - rRNA processing [Evidence IMP,IPI] [PMID 15056729]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; Esf1p 3477085 ESF1 30032861 ESF1 Sugiyamaella lignohabitans Esf1p XP_018735302.1 3475079 D 796027 CDS AWJ20_1098 30032862 complement(join(3477299..3479553,3479726..3479747)) A 1 NC_031672.1 B-type regulatory subunit of protein phosphatase 2A (PP2A); Rts1p and Cdc55p are alternative regulatory subunits for PP2A catalytic subunits, Pph21p and Pph22p; PP2A-Rts1p protects cohesin when recruited by Sgo1p to the pericentromere; highly enriched at centromeres in the absence of Cdc55p; required for maintenance of septin ring organization during cytokinesis, for ring disassembly in G1 and for dephosphorylation of septin, Shs1p; homolog of the mammalian B' subunit of PP2A; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 12388751]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 12636916]; GO_component: GO:0000780 - condensed nuclear chromosome, centromeric region [Evidence IDA] [PMID 16541024]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0000776 - kinetochore [Evidence IDA] [PMID 12636916]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 12388751]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 12636916]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_component: GO:0000159 - protein phosphatase type 2A complex [Evidence IEA]; GO_component: GO:0005816 - spindle pole body [Evidence IDA] [PMID 12388751]; GO_function: GO:0008601 - protein phosphatase type 2A regulator activity [Evidence IEA]; GO_function: GO:0008601 - protein phosphatase type 2A regulator activity [Evidence IDA] [PMID 9079645]; GO_process: GO:0032186 - cellular bud neck septin ring organization [Evidence IGI,IMP] [PMID 12636916]; GO_process: GO:0034613 - cellular protein localization [Evidence IMP] [PMID 19605686]; GO_process: GO:0051754 - meiotic sister chromatid cohesion, centromeric [Evidence IMP] [PMID 16541024]; GO_process: GO:0031578 - mitotic spindle orientation checkpoint [Evidence IGI] [PMID 19605686]; GO_process: GO:0006470 - protein dephosphorylation [Evidence IMP] [PMID 19605686]; GO_process: GO:0006470 - protein dephosphorylation [Evidence IDA] [PMID 22581371]; GO_process: GO:0050790 - regulation of catalytic activity [Evidence IEA]; GO_process: GO:0031107 - septin ring disassembly [Evidence IMP] [PMID 12636916]; GO_process: GO:0007165 - signal transduction [Evidence IEA]; protein phosphatase 2A regulatory subunit RTS1 3479747 RTS1 30032862 RTS1 Sugiyamaella lignohabitans protein phosphatase 2A regulatory subunit RTS1 XP_018735303.1 3477299 R 796027 CDS AWJ20_1099 30032863 complement(3481568..3485965) A 1 NC_031672.1 Type V myosin motor involved in actin-based transport of cargos; required for the polarized delivery of secretory vesicles, the vacuole, late Golgi elements, peroxisomes, and the mitotic spindle; MYO2 has a paralog, MYO4, that arose from the whole genome duplication; GO_component: GO:0071563 - Myo2p-Vac17p-Vac8p transport complex [Evidence IPI] [PMID 12594460]; GO_component: GO:0032432 - actin filament bundle [Evidence IMP] [PMID 9864365]; GO_component: GO:0005935 - cellular bud neck [Evidence IEA]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 8188749]; GO_component: GO:0005934 - cellular bud tip [Evidence IEA]; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 8188749]; GO_component: GO:0031941 - filamentous actin [Evidence IDA] [PMID 11381095]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 8978821]; GO_component: GO:0000131 - incipient cellular bud site [Evidence IDA] [PMID 8188749]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 19053807]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 8188749]; GO_component: GO:0031475 - myosin V complex [Evidence ISS] [PMID 1469047]; GO_component: GO:0016459 - myosin complex [Evidence IEA,IEA]; GO_component: GO:0030133 - transport vesicle [Evidence IDA] [PMID 23079598]; GO_component: GO:0031982 - vesicle [Evidence IDA] [PMID 12456647]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0003779 - actin binding [Evidence IEA]; GO_function: GO:0051015 - actin filament binding [Evidence IEA]; GO_function: GO:0051015 - actin filament binding [Evidence IDA] [PMID 11381095]; GO_function: GO:0005516 - calmodulin binding [Evidence IEA]; GO_function: GO:0005516 - calmodulin binding [Evidence IDA] [PMID 8294515]; GO_function: GO:0000146 - microfilament motor activity [Evidence IDA] [PMID 11381095]; GO_function: GO:0003774 - motor activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0048313 - Golgi inheritance [Evidence IMP] [PMID 11285273]; GO_process: GO:0007118 - budding cell apical bud growth [Evidence IMP] [PMID 2016335]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0000132 - establishment of mitotic spindle orientation [Evidence IMP,IPI] [PMID 10984058]; GO_process: GO:0007107 - membrane addition at site of cytokinesis [Evidence IEP,IGI,IMP] [PMID 12456647]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0000001 - mitochondrion inheritance [Evidence IGI,IMP] [PMID 12391144]; GO_process: GO:0000001 - mitochondrion inheritance [Evidence IGI,IPI] [PMID 15201867]; GO_process: GO:0045033 - peroxisome inheritance [Evidence IMP] [PMID 11733545]; GO_process: GO:0045033 - peroxisome inheritance [Evidence IPI] [PMID 16678774]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0009826 - unidimensional cell growth [Evidence IMP] [PMID 9864365]; GO_process: GO:0000011 - vacuole inheritance [Evidence IGI,IPI] [PMID 12594460]; GO_process: GO:0000011 - vacuole inheritance [Evidence IGI,IMP] [PMID 8978821]; GO_process: GO:0030050 - vesicle transport along actin filament [Evidence IEP,IMP] [PMID 10562281]; GO_process: GO:0030050 - vesicle transport along actin filament [Evidence IEP,IMP] [PMID 9864365]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IMP] [PMID 2016335]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IGI] [PMID 9864365]; myosin 2 3485965 MYO2 30032863 MYO2 Sugiyamaella lignohabitans myosin 2 XP_018735304.1 3481568 R 796027 CDS AWJ20_1100 30032866 3491835..3493391 A 1 NC_031672.1 Delta subunit of the translation initiation factor eIF2B; the guanine-nucleotide exchange factor for eIF2; activity subsequently regulated by phosphorylated eIF2; first identified as a negative regulator of GCN4 expression; GO_component: GO:0005851 - eukaryotic translation initiation factor 2B complex [Evidence IGI] [PMID 8336705]; GO_component: GO:0005851 - eukaryotic translation initiation factor 2B complex [Evidence IDA,IPI] [PMID 8506384]; GO_component: GO:0032045 - guanyl-nucleotide exchange factor complex [Evidence IGI] [PMID 8336705]; GO_component: GO:0032045 - guanyl-nucleotide exchange factor complex [Evidence IDA] [PMID 8506384]; GO_function: GO:0030234 - enzyme regulator activity [Evidence IGI] [PMID 8164676]; GO_function: GO:0030234 - enzyme regulator activity [Evidence IGI,IPI] [PMID 8887689]; GO_function: GO:0030234 - enzyme regulator activity [Evidence IMP] [PMID 9032257]; GO_function: GO:0005085 - guanyl-nucleotide exchange factor activity [Evidence IDA] [PMID 8506384]; GO_function: GO:0003743 - translation initiation factor activity [Evidence IEA]; GO_function: GO:0003743 - translation initiation factor activity [Evidence IMP] [PMID 2038326]; GO_function: GO:0003743 - translation initiation factor activity [Evidence IGI] [PMID 8336705]; GO_process: GO:0044237 - cellular metabolic process [Evidence IEA]; GO_process: GO:0045947 - negative regulation of translational initiation [Evidence IBA]; GO_process: GO:0006417 - regulation of translation [Evidence IEA]; GO_process: GO:0006446 - regulation of translational initiation [Evidence IGI] [PMID 8164676]; GO_process: GO:0006446 - regulation of translational initiation [Evidence IDA] [PMID 8506384]; GO_process: GO:0006446 - regulation of translational initiation [Evidence IGI,IPI] [PMID 8887689]; GO_process: GO:0006446 - regulation of translational initiation [Evidence IMP] [PMID 9032257]; GO_process: GO:0006412 - translation [Evidence IEA]; GO_process: GO:0006413 - translational initiation [Evidence IEA]; Gcd2p 3493391 GCD2 30032866 GCD2 Sugiyamaella lignohabitans Gcd2p XP_018735305.1 3491835 D 796027 CDS AWJ20_1101 30032867 3495174..3495728 A 1 NC_031672.1 H subunit of the mitochondrial glycine decarboxylase complex; glycine decarboxylase is required for the catabolism of glycine to 5,10-methylene-THF; also required for all protein lipoylation; expression is regulated by levels of 5,10-methylene-THF; GO_component: GO:0005960 - glycine cleavage complex [Evidence IEA]; GO_component: GO:0005960 - glycine cleavage complex [Evidence ISA] [PMID 9020168]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 19570983]; GO_function: GO:0004375 - glycine dehydrogenase (decarboxylating) activity [Evidence IMP,ISA] [PMID 9020168]; GO_process: GO:0006546 - glycine catabolic process [Evidence IEA]; GO_process: GO:0006546 - glycine catabolic process [Evidence IMP] [PMID 9020168]; GO_process: GO:0019464 - glycine decarboxylation via glycine cleavage system [Evidence IEA]; GO_process: GO:0006730 - one-carbon metabolic process [Evidence IGI] [PMID 10871621]; GO_process: GO:0009249 - protein lipoylation [Evidence IMP] [PMID 19570983]; glycine decarboxylase subunit H 3495728 GCV3 30032867 GCV3 Sugiyamaella lignohabitans glycine decarboxylase subunit H XP_018735306.1 3495174 D 796027 CDS AWJ20_1102 30032868 3497038..3499071 A 1 NC_031672.1 Similar to 6-phosphofructo-2-kinase enzymes; mRNA expression is repressed by the Rfx1p-Tup1p-Ssn6p repressor complex; YLR345W is not an essential gene; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0003873 - 6-phosphofructo-2-kinase activity [Evidence IEA,IEA]; GO_function: GO:0003873 - 6-phosphofructo-2-kinase activity [Evidence NAS] [PMID 15494396]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA,IEA]; GO_function: GO:0004331 - fructose-2,6-bisphosphate 2-phosphatase activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0046835 - carbohydrate phosphorylation [Evidence IEA,IEA]; GO_process: GO:0016311 - dephosphorylation [Evidence IEA,IEA]; GO_process: GO:0006003 - fructose 2,6-bisphosphate metabolic process [Evidence IEA]; GO_process: GO:0006003 - fructose 2,6-bisphosphate metabolic process [Evidence NAS] [PMID 15494396]; GO_process: GO:0006000 - fructose metabolic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; GO_process: GO:0006110 - regulation of glycolytic process [Evidence NAS] [PMID 15494396]; bifunctional fructose-2,6-bisphosphate 2-phosphatase/6-phosphofructo-2-kinase 3499071 30032868 AWJ20_1102 Sugiyamaella lignohabitans bifunctional fructose-2,6-bisphosphate 2-phosphatase/6-phosphofructo-2-kinase XP_018735307.1 3497038 D 796027 CDS AWJ20_1103 30032869 complement(3501440..3504289) A 1 NC_031672.1 Putative FAD transporter, similar to Flc1p and Flc2p; localized to the ER; FLC3 has a paralog, FLC1, that arose from the whole genome duplication; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 16717099]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016021 - integral component of membrane [Evidence ISS] [PMID 9046099]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0015230 - FAD transmembrane transporter activity [Evidence ISS] [PMID 16717099]; GO_process: GO:0015883 - FAD transport [Evidence ISS] [PMID 16717099]; GO_process: GO:0055085 - transmembrane transport [Evidence ISS] [PMID 16717099]; GO_process: GO:0006810 - transport [Evidence IEA]; Flc3p 3504289 FLC3 30032869 FLC3 Sugiyamaella lignohabitans Flc3p XP_018735308.1 3501440 R 796027 CDS AWJ20_1104 30032870 complement(3506365..3507381) A 1 NC_031672.1 Kinetochore checkpoint WD40 repeat protein; localizes to kinetochores during prophase and metaphase, delays anaphase in the presence of unattached kinetochores; forms complexes with Mad1p-Bub1p and with Cdc20p, binds Mad2p and Mad3p; GO_component: GO:0000778 - condensed nuclear chromosome kinetochore [Evidence IPI] [PMID 12221113]; GO_component: GO:0033597 - mitotic checkpoint complex [Evidence IPI] [PMID 10704439]; GO_component: GO:0033597 - mitotic checkpoint complex [Evidence IDA,IPI] [PMID 11726501]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0043130 - ubiquitin binding [Evidence IDA] [PMID 21070969]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0044774 - mitotic DNA integrity checkpoint [Evidence IGI] [PMID 16651657]; GO_process: GO:0007094 - mitotic spindle assembly checkpoint [Evidence TAS] [PMID 9448456]; Bub3p 3507381 BUB3 30032870 BUB3 Sugiyamaella lignohabitans Bub3p XP_018735309.1 3506365 R 796027 CDS AWJ20_1105 30032871 3508404..3509993 A 1 NC_031672.1 C-22 sterol desaturase; a cytochrome P450 enzyme that catalyzes the formation of the C-22(23) double bond in the sterol side chain in ergosterol biosynthesis; may be a target of azole antifungal drugs; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 14562095]; GO_function: GO:0000249 - C-22 sterol desaturase activity [Evidence IDA] [PMID 8543054]; GO_function: GO:0020037 - heme binding [Evidence IEA]; GO_function: GO:0005506 - iron ion binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004497 - monooxygenase activity [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [Evidence IEA]; GO_process: GO:0006696 - ergosterol biosynthetic process [Evidence IDA] [PMID 8543054]; GO_process: GO:0006696 - ergosterol biosynthetic process [Evidence IMP] [PMID 8635732]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0006694 - steroid biosynthetic process [Evidence IEA]; GO_process: GO:0008202 - steroid metabolic process [Evidence IEA]; GO_process: GO:0016126 - sterol biosynthetic process [Evidence IEA,IEA]; C-22 sterol desaturase 3509993 ERG5 30032871 ERG5 Sugiyamaella lignohabitans C-22 sterol desaturase XP_018735310.1 3508404 D 796027 CDS AWJ20_1106 30032872 complement(3512333..3513148) A 1 NC_031672.1 7,8-diamino-pelargonic acid aminotransferase (DAPA); catalyzes the second step in the biotin biosynthesis pathway; BIO3 is in a cluster of 3 genes (BIO3, BIO4, and BIO5) that mediate biotin synthesis; BIO3 and BIO4 were acquired by horizontal gene transfer (HGT) from bacteria; GO_component: GO:0005737 - cytoplasm [Evidence ISS] [PMID 10333520]; GO_function: GO:0004015 - adenosylmethionine-8-amino-7-oxononanoate transaminase activity [Evidence IEA,IEA]; GO_function: GO:0004015 - adenosylmethionine-8-amino-7-oxononanoate transaminase activity [Evidence IDA,ISS] [PMID 10333520]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0030170 - pyridoxal phosphate binding [Evidence IEA]; GO_function: GO:0008483 - transaminase activity [Evidence IEA,IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0009102 - biotin biosynthetic process [Evidence IEA,IEA,IEA]; GO_process: GO:0009102 - biotin biosynthetic process [Evidence IDA,IMP] [PMID 10333520]; adenosylmethionine-8-amino-7-oxononanoate transaminase 3513148 BIO3 30032872 BIO3 Sugiyamaella lignohabitans adenosylmethionine-8-amino-7-oxononanoate transaminase XP_018735311.1 3512333 R 796027 CDS AWJ20_1107 30032873 complement(3514294..3515724) A 1 NC_031672.1 acid phosphatase PHO11 3515724 PHO11 30032873 PHO11 Sugiyamaella lignohabitans acid phosphatase PHO11 XP_018735312.1 3514294 R 796027 CDS AWJ20_1108 30032874 3517634..3518569 A 1 NC_031672.1 NADPH-dependent alpha-keto amide reductase; reduces aromatic alpha-keto amides, aliphatic alpha-keto esters, and aromatic alpha-keto esters; member of the aldo-keto reductase (AKR) family; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 16622836]; GO_function: GO:0004032 - alditol:NADP+ 1-oxidoreductase activity [Evidence IDA,ISS] [PMID 11306085]; GO_function: GO:0004033 - aldo-keto reductase (NADP) activity [Evidence IDA] [PMID 17140678]; GO_function: GO:0051268 - alpha-keto amide reductase activity [Evidence IDA] [PMID 15564669]; GO_function: GO:0051269 - alpha-keto ester reductase activity [Evidence IDA] [PMID 15564669]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_process: GO:0043603 - cellular amide metabolic process [Evidence IDA] [PMID 15564669]; GO_process: GO:0006725 - cellular aromatic compound metabolic process [Evidence IDA] [PMID 16268655]; GO_process: GO:0042180 - cellular ketone metabolic process [Evidence IDA] [PMID 17140678]; GO_process: GO:0034599 - cellular response to oxidative stress [Evidence IGI] [PMID 17919749]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; aldo-keto reductase superfamily protein 3518569 30032874 AWJ20_1108 Sugiyamaella lignohabitans aldo-keto reductase superfamily protein XP_018735313.1 3517634 D 796027 CDS AWJ20_1109 30032875 complement(3521049..3521405) A 1 NC_031672.1 RNA polymerase III subunit C31; GO_component: GO:0005666 - DNA-directed RNA polymerase III complex [Evidence IDA] [PMID 10611227]; GO_component: GO:0005666 - DNA-directed RNA polymerase III complex [Evidence IDA] [PMID 3905793]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0003899 - DNA-directed RNA polymerase activity [Evidence IEA]; GO_function: GO:0001056 - RNA polymerase III activity [Evidence IDA] [PMID 3905793]; GO_function: GO:0016779 - nucleotidyltransferase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0042797 - tRNA transcription from RNA polymerase III promoter [Evidence IMP] [PMID 2201900]; GO_process: GO:0042797 - tRNA transcription from RNA polymerase III promoter [Evidence IDA] [PMID 3905793]; GO_process: GO:0006384 - transcription initiation from RNA polymerase III promoter [Evidence IMP] [PMID 7835345]; Rpc31p 3521405 RPC31 30032875 RPC31 Sugiyamaella lignohabitans Rpc31p XP_018735314.1 3521049 R 796027 CDS AWJ20_1110 30032877 3522212..3523411 A 1 NC_031672.1 SMR domain protein 3523411 30032877 AWJ20_1110 Sugiyamaella lignohabitans SMR domain protein XP_018735315.1 3522212 D 796027 CDS AWJ20_1111 30032878 3524520..3526265 A 1 NC_031672.1 Plasma membrane protein of the Major Facilitator Superfamily (MFS); involved in amino acid uptake and drug sensitivity; VBA5 has a paralog, VBA3, that arose from a segmental duplication; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 23047103]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0022857 - transmembrane transporter activity [Evidence IEA]; GO_process: GO:0006865 - amino acid transport [Evidence IEA]; GO_process: GO:0015809 - arginine transport [Evidence IGI,IMP] [PMID 23047103]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Vba5p 3526265 VBA5 30032878 VBA5 Sugiyamaella lignohabitans Vba5p XP_018735316.1 3524520 D 796027 CDS AWJ20_1113 30032880 complement(3528651..3530012) A 1 NC_031672.1 SAM complex subunit SAM50 3530012 SAM50 30032880 SAM50 Sugiyamaella lignohabitans SAM complex subunit SAM50 XP_018735317.1 3528651 R 796027 CDS AWJ20_1115 30032882 complement(3535441..3537153) A 1 NC_031672.1 uncharacterized protein 3537153 30032882 AWJ20_1115 Sugiyamaella lignohabitans uncharacterized protein XP_018735318.1 3535441 R 796027 CDS AWJ20_1116 30032883 3538225..3539193 A 1 NC_031672.1 uncharacterized protein 3539193 30032883 AWJ20_1116 Sugiyamaella lignohabitans uncharacterized protein XP_018735319.1 3538225 D 796027 CDS AWJ20_1118 30032885 3540364..3540786 A 1 NC_031672.1 Flavin-linked sulfhydryl oxidase of the mitochondrial IMS; N-terminus is an intrinsically disordered domain that in the cytosol helps target Erv1p to mitochondria, and in the intermembrane space oxidizes Mia40p as part of a disulfide relay system that promotes intermembrane space retention of imported proteins; functional ortholog of human GFER (ALR); GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IEA]; GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IDA] [PMID 11493598]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0016971 - flavin-linked sulfhydryl oxidase activity [Evidence IDA] [PMID 10899311]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0016972 - thiol oxidase activity [Evidence IEA,IEA]; GO_function: GO:0016972 - thiol oxidase activity [Evidence IMP] [PMID 15989955]; GO_process: GO:0006879 - cellular iron ion homeostasis [Evidence IDA] [PMID 11493598]; GO_process: GO:0034599 - cellular response to oxidative stress [Evidence IMP] [PMID 15989955]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0045041 - protein import into mitochondrial intermembrane space [Evidence IMP] [PMID 15989955]; GO_process: GO:0045041 - protein import into mitochondrial intermembrane space [Evidence IMP] [PMID 16181637]; Erv1p 3540786 ERV1 30032885 ERV1 Sugiyamaella lignohabitans Erv1p XP_018735320.1 3540364 D 796027 CDS AWJ20_1119 30032886 complement(3541015..3542904) A 1 NC_031672.1 Proline-rich actin-associated protein; involved in cytoskeletal organization and cytokinesis; promotes actin nucleation and endocytosis; related to mammalian Wiskott-Aldrich syndrome protein (WASP)-interacting protein (WIP); GO_component: GO:0030479 - actin cortical patch [Evidence IDA] [PMID 9412475]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 9412475]; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA,IEA]; GO_component: GO:0000131 - incipient cellular bud site [Evidence IDA] [PMID 9412475]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 19053807]; GO_function: GO:0003779 - actin binding [Evidence IEA]; GO_function: GO:0003779 - actin binding [Evidence IPI] [PMID 9412475]; GO_process: GO:0051666 - actin cortical patch localization [Evidence IMP] [PMID 8590801]; GO_process: GO:0030036 - actin cytoskeleton organization [Evidence IGI,IMP,IPI] [PMID 9412475]; GO_process: GO:0007015 - actin filament organization [Evidence IPI] [PMID 9412475]; GO_process: GO:0007121 - bipolar cellular bud site selection [Evidence IMP] [PMID 9412475]; GO_process: GO:0006897 - endocytosis [Evidence IMP] [PMID 8590801]; GO_process: GO:0006897 - endocytosis [Evidence IMP] [PMID 9742397]; GO_process: GO:0032465 - regulation of cytokinesis [Evidence IMP] [PMID 15941409]; Vrp1p 3542904 VRP1 30032886 VRP1 Sugiyamaella lignohabitans Vrp1p XP_018735321.1 3541015 R 796027 CDS AWJ20_1120 30032888 3544428..3550019 A 1 NC_031672.1 Catalytic subunit of 1,3-beta-D-glucan synthase; functionally redundant with alternate catalytic subunit Gsc2p; binds to regulatory subunit Rho1p; involved in cell wall synthesis and maintenance; localizes to sites of cell wall remodeling; FKS1 has a paralog, GSC2, that arose from the whole genome duplication; GO_component: GO:0000148 - 1,3-beta-D-glucan synthase complex [Evidence IEA]; GO_component: GO:0000148 - 1,3-beta-D-glucan synthase complex [Evidence IDA] [PMID 7983071]; GO_component: GO:0030479 - actin cortical patch [Evidence IDA] [PMID 11856368]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 11856368]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 8602515]; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 11856368]; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 8602515]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 11856368]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 17507646]; GO_function: GO:0003843 - 1,3-beta-D-glucan synthase activity [Evidence IEA,IEA]; GO_function: GO:0003843 - 1,3-beta-D-glucan synthase activity [Evidence IDA,IMP] [PMID 7528927]; GO_function: GO:0003843 - 1,3-beta-D-glucan synthase activity [Evidence IDA] [PMID 7649185]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA]; GO_process: GO:0006075 - (1->3)-beta-D-glucan biosynthetic process [Evidence IEA]; GO_process: GO:0006075 - (1->3)-beta-D-glucan biosynthetic process [Evidence IDA,IMP] [PMID 7528927]; GO_process: GO:0045807 - positive regulation of endocytosis [Evidence IMP] [PMID 14593073]; GO_process: GO:0008360 - regulation of cell shape [Evidence IEA]; GO_process: GO:0008361 - regulation of cell size [Evidence IMP] [PMID 17302939]; 1,3-beta-D-glucan synthase 3550019 FKS1 30032888 FKS1 Sugiyamaella lignohabitans 1,3-beta-D-glucan synthase XP_018735322.1 3544428 D 796027 CDS AWJ20_1121 30032889 complement(3550212..3550871) A 1 NC_031672.1 Mitochondrial protein involved in mitochondrial protein sorting; putative membrane-spanning ATPase; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IEA,IEA]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IDA] [PMID 16407407]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IDA] [PMID 8226973]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016887 - ATPase activity [Evidence ISS] [PMID 8226973]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0006626 - protein targeting to mitochondrion [Evidence IGI] [PMID 8226973]; Msp1p 3550871 MSP1 30032889 MSP1 Sugiyamaella lignohabitans Msp1p XP_018735323.1 3550212 R 796027 CDS AWJ20_1122 30032890 complement(3551207..3551539) A 1 NC_031672.1 Mitochondrial protein involved in mitochondrial protein sorting; putative membrane-spanning ATPase; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IEA,IEA]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IDA] [PMID 16407407]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IDA] [PMID 8226973]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016887 - ATPase activity [Evidence ISS] [PMID 8226973]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0006626 - protein targeting to mitochondrion [Evidence IGI] [PMID 8226973]; Msp1p 3551539 MSP1 30032890 MSP1 Sugiyamaella lignohabitans Msp1p XP_018735324.1 3551207 R 796027 CDS AWJ20_1124 30032892 3554460..3555593 A 1 NC_031672.1 Synthase subunit of trehalose-6-P synthase/phosphatase complex; synthesizes the storage carbohydrate trehalose; also found in a monomeric form; expression is induced by the stress response and repressed by the Ras-cAMP pathway; protein abundance increases in response to DNA replication stress and in response to prolonged exposure to boric acid; GO_component: GO:0005946 - alpha,alpha-trehalose-phosphate synthase complex (UDP-forming) [Evidence IDA,IMP] [PMID 1425702]; GO_component: GO:0005946 - alpha,alpha-trehalose-phosphate synthase complex (UDP-forming) [Evidence IGI,IMP,IPI] [PMID 9837904]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_function: GO:0003825 - alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity [Evidence IEA,IEA]; GO_function: GO:0003825 - alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity [Evidence IDA,IMP] [PMID 1425702]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA]; GO_process: GO:0044262 - cellular carbohydrate metabolic process [Evidence IDA,IMP] [PMID 1425702]; GO_process: GO:0034605 - cellular response to heat [Evidence IDA] [PMID 9660948]; GO_process: GO:0034599 - cellular response to oxidative stress [Evidence IMP] [PMID 11483159]; GO_process: GO:0006950 - response to stress [Evidence IEA]; GO_process: GO:0005992 - trehalose biosynthetic process [Evidence IEA]; GO_process: GO:0005992 - trehalose biosynthetic process [Evidence IDA,IMP] [PMID 1425702]; alpha,alpha-trehalose-phosphate synthase (UDP-forming) TPS1 3555593 TPS1 30032892 TPS1 Sugiyamaella lignohabitans alpha,alpha-trehalose-phosphate synthase (UDP-forming) TPS1 XP_018735325.1 3554460 D 796027 CDS AWJ20_1125 30032893 complement(3555855..3557420) A 1 NC_031672.1 Anthranilate synthase; catalyzes the initial step of tryptophan biosynthesis, forms multifunctional hetero-oligomeric anthranilate synthase:indole-3-glycerol phosphate synthase enzyme complex with Trp3p; GO_component: GO:0005950 - anthranilate synthase complex [Evidence IPI] [PMID 3881257]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0004049 - anthranilate synthase activity [Evidence IEA,IEA]; GO_function: GO:0004049 - anthranilate synthase activity [Evidence IDA] [PMID 3881257]; GO_function: GO:0004049 - anthranilate synthase activity [Evidence IGI,ISS] [PMID 6323449]; GO_function: GO:0016829 - lyase activity [Evidence IEA]; GO_function: GO:0016833 - oxo-acid-lyase activity [Evidence IEA]; GO_process: GO:0009073 - aromatic amino acid family biosynthetic process [Evidence IEA]; GO_process: GO:0009058 - biosynthetic process [Evidence IEA]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0000162 - tryptophan biosynthetic process [Evidence IEA,IEA,IEA]; GO_process: GO:0000162 - tryptophan biosynthetic process [Evidence IMP] [PMID 8432699]; anthranilate synthase TRP2 3557420 TRP2 30032893 TRP2 Sugiyamaella lignohabitans anthranilate synthase TRP2 XP_018735326.1 3555855 R 796027 CDS AWJ20_1126 30032894 3559515..3560849 A 1 NC_031672.1 Type 2C protein phosphatase (PP2C); dephosphorylates Hog1p to limit maximal osmostress induced kinase activity; dephosphorylates Ire1p to downregulate the unfolded protein response; dephosphorylates Cdc28p; inactivates the DNA damage checkpoint; PTC2 has a paralog, PTC3, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004721 - phosphoprotein phosphatase activity [Evidence IEA,IEA]; GO_function: GO:0004722 - protein serine/threonine phosphatase activity [Evidence IEA]; GO_function: GO:0004722 - protein serine/threonine phosphatase activity [Evidence IDA] [PMID 10580002]; GO_process: GO:0000077 - DNA damage checkpoint [Evidence IGI] [PMID 10747050]; GO_process: GO:0030968 - endoplasmic reticulum unfolded protein response [Evidence IMP,IPI] [PMID 9528768]; GO_process: GO:0000173 - inactivation of MAPK activity involved in osmosensory signaling pathway [Evidence IGI] [PMID 11113180]; GO_process: GO:0000173 - inactivation of MAPK activity involved in osmosensory signaling pathway [Evidence IDA,IGI,IMP] [PMID 12477803]; GO_process: GO:0006470 - protein dephosphorylation [Evidence IEA]; GO_process: GO:0006470 - protein dephosphorylation [Evidence IDA] [PMID 10580002]; GO_process: GO:0006470 - protein dephosphorylation [Evidence IDA] [PMID 12477803]; GO_process: GO:0000079 - regulation of cyclin-dependent protein serine/threonine kinase activity [Evidence IMP,IPI] [PMID 10580002]; type 2C protein phosphatase PTC2 3560849 PTC2 30032894 PTC2 Sugiyamaella lignohabitans type 2C protein phosphatase PTC2 XP_018735327.1 3559515 D 796027 CDS AWJ20_1127 30032895 complement(3566732..3567574) A 1 NC_031672.1 3'-->5' exonuclease and endonuclease with a possible role in apoptosis; has similarity to mammalian and C. elegans apoptotic nucleases; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0008296 - 3'-5'-exodeoxyribonuclease activity [Evidence IDA] [PMID 15657035]; GO_function: GO:0016888 - endodeoxyribonuclease activity, producing 5'-phosphomonoesters [Evidence IEA]; GO_function: GO:0004519 - endonuclease activity [Evidence IDA] [PMID 15657035]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004518 - nuclease activity [Evidence IEA]; GO_process: GO:0006309 - apoptotic DNA fragmentation [Evidence IMP] [PMID 15657035]; GO_process: GO:0034599 - cellular response to oxidative stress [Evidence IMP] [PMID 15657035]; 3'-5'-exodeoxyribonuclease 3567574 30032895 AWJ20_1127 Sugiyamaella lignohabitans 3'-5'-exodeoxyribonuclease XP_018735328.1 3566732 R 796027 CDS AWJ20_1128 30032896 complement(3569761..3571221) A 1 NC_031672.1 Oxysterol-binding protein; part of family with seven members in S. cerevisiae; family members have overlapping, redundant functions in sterol metabolism and collectively perform a function essential for viability; OSH7 has a paralog, OSH6, that arose from the whole genome duplication; GO_component: GO:0032541 - cortical endoplasmic reticulum [Evidence IDA] [PMID 20008566]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 16096648]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_function: GO:0008289 - lipid binding [Evidence IEA]; GO_function: GO:0008289 - lipid binding [Evidence IDA] [PMID 20008566]; GO_function: GO:0008142 - oxysterol binding [Evidence ISS] [PMID 11238399]; GO_process: GO:0006897 - endocytosis [Evidence IGI] [PMID 15173322]; GO_process: GO:0006887 - exocytosis [Evidence IGI] [PMID 17004323]; GO_process: GO:0045324 - late endosome to vacuole transport [Evidence IMP] [PMID 16096648]; GO_process: GO:0006869 - lipid transport [Evidence IEA]; GO_process: GO:0030011 - maintenance of cell polarity [Evidence IGI] [PMID 17004323]; GO_process: GO:0016125 - sterol metabolic process [Evidence IGI] [PMID 16096648]; GO_process: GO:0015918 - sterol transport [Evidence IGI] [PMID 16585271]; GO_process: GO:0006810 - transport [Evidence IEA]; oxysterol-binding protein related protein OSH7 3571221 OSH7 30032896 OSH7 Sugiyamaella lignohabitans oxysterol-binding protein related protein OSH7 XP_018735329.1 3569761 R 796027 CDS AWJ20_1129 30032897 3576445..3577284 A 1 NC_031672.1 Nonessential hypothetical protein; predicted to be involved in ribosome biogenesis; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm; similar to mammalian BRP16 (Brain protein 16); relative distribution to the nucleus increases upon DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; Hgh1p 3577284 HGH1 30032897 HGH1 Sugiyamaella lignohabitans Hgh1p XP_018735330.1 3576445 D 796027 CDS AWJ20_1130 30032899 complement(3577350..3578324) A 1 NC_031672.1 top hit is XP_007844384.1 originated in Moniliophthora roreri MCA 2997; membrane transporter 3578324 30032899 AWJ20_1130 Sugiyamaella lignohabitans membrane transporter XP_018735331.1 3577350 R 796027 CDS AWJ20_1131 30032900 complement(3579369..3580079) A 1 NC_031672.1 hypothetical protein; expression is induced over 100-fold by DNA damage; induction decreased in rad6 and rad18 mutants; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016829 - lyase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0008081 - phosphoric diester hydrolase activity [Evidence IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; Ddi2p 3580079 DDI2 30032900 DDI2 Sugiyamaella lignohabitans Ddi2p XP_018735332.1 3579369 R 796027 CDS AWJ20_1132 30032901 3584484..3585989 A 1 NC_031672.1 UDP-glucose pyrophosphorylase (UGPase); catalyses the reversible formation of UDP-Glc from glucose 1-phosphate and UTP, involved in a wide variety of metabolic pathways, expression modulated by Pho85p through Pho4p; UGP1 has a paralog, YHL012W, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 16622836]; GO_function: GO:0003983 - UTP:glucose-1-phosphate uridylyltransferase activity [Evidence IEA]; GO_function: GO:0003983 - UTP:glucose-1-phosphate uridylyltransferase activity [Evidence IMP,ISS] [PMID 7588797]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016779 - nucleotidyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0070569 - uridylyltransferase activity [Evidence IDA] [PMID 22580055]; GO_process: GO:0006078 - (1->6)-beta-D-glucan biosynthetic process [Evidence IMP] [PMID 17531808]; GO_process: GO:0006011 - UDP-glucose metabolic process [Evidence IMP] [PMID 7588797]; GO_process: GO:0006011 - UDP-glucose metabolic process [Evidence IGI,IMP] [PMID 9252577]; GO_process: GO:0005978 - glycogen biosynthetic process [Evidence IGI,IMP] [PMID 9252577]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0005992 - trehalose biosynthetic process [Evidence IGI] [PMID 9252577]; UTP glucose-1-phosphate uridylyltransferase 3585989 UGP1 30032901 UGP1 Sugiyamaella lignohabitans UTP glucose-1-phosphate uridylyltransferase XP_018735333.1 3584484 D 796027 CDS AWJ20_1134 30032903 complement(3587510..3588325) A 1 NC_031672.1 Ribonuclease H1; able to bind double-stranded RNAs and RNA-DNA hybrids; associates with RNAse polymerase I; GO_component: GO:0005622 - intracellular [Evidence TAS] [PMID 7489497]; GO_component: GO:0005634 - nucleus [Evidence IC] [PMID 9759502]; GO_function: GO:0004523 - RNA-DNA hybrid ribonuclease activity [Evidence IEA,IEA]; GO_function: GO:0004523 - RNA-DNA hybrid ribonuclease activity [Evidence IDA] [PMID 7489497]; GO_function: GO:0004519 - endonuclease activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0000287 - magnesium ion binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004518 - nuclease activity [Evidence IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_process: GO:0006401 - RNA catabolic process [Evidence IDA] [PMID 7489497]; GO_process: GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic [Evidence IEA,IEA]; GO_process: GO:0090305 - nucleic acid phosphodiester bond hydrolysis [Evidence IEA]; Rnh1p 3588325 RNH1 30032903 RNH1 Sugiyamaella lignohabitans Rnh1p XP_018735334.1 3587510 R 796027 CDS AWJ20_1135 30032904 3590197..3592884 A 1 NC_031672.1 Cargo-transport protein involved in endocytosis; interacts with phosphatidylinositol-4-kinase Stt4p; is required, along with Efr3p, for the assembly and recruitment of multiple copies of the kinase into phosphoinositide kinase (PIK) patches at the plasma membrane; positively regulates Stt4p; GFP-fusion protein localizes to the cytoplasm; YGR198W is an essential gene; GO_component: GO:0030479 - actin cortical patch [Evidence IDA] [PMID 17576801]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 17576801]; GO_component: GO:0005768 - endosome [Evidence IDA] [PMID 17576801]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 14690591]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 19075114]; GO_component: GO:0005840 - ribosome [Evidence IDA] [PMID 16702403]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006897 - endocytosis [Evidence IEA]; GO_process: GO:0090002 - establishment of protein localization to plasma membrane [Evidence IDA] [PMID 19075114]; GO_process: GO:0006623 - protein targeting to vacuole [Evidence IDA,IMP] [PMID 17576801]; GO_process: GO:0006898 - receptor-mediated endocytosis [Evidence IDA] [PMID 17576801]; GO_process: GO:0019236 - response to pheromone [Evidence IDA] [PMID 17576801]; Ypp1p 3592884 YPP1 30032904 YPP1 Sugiyamaella lignohabitans Ypp1p XP_018735335.1 3590197 D 796027 CDS AWJ20_1136 30032905 complement(3594888..3596303) A 1 NC_031672.1 top hit is XP_963644.2 originated in Neurospora crassa OR74A; glutamate decarboxylase 3596303 GAD2 30032905 GAD2 Sugiyamaella lignohabitans glutamate decarboxylase XP_018735336.1 3594888 R 796027 CDS AWJ20_1137 30032906 complement(3597351..3600326) A 1 NC_031672.1 allele of CaO19.8194; polyprotein of L1-like non-LTR retrotransposon Zorro 3 3600326 POL92 30032906 POL92 Sugiyamaella lignohabitans polyprotein of L1-like non-LTR retrotransposon Zorro 3 XP_018735337.1 3597351 R 796027 CDS AWJ20_1139 30032908 complement(3602998..3606579) A 1 NC_031672.1 Protein involved in transcription-coupled nucleotide excision repair; repairs UV-induced DNA lesions; recruitment to DNA lesions is dependent on an elongating RNA polymerase II; homolog of human CSB protein; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0008094 - DNA-dependent ATPase activity [Evidence IDA] [PMID 8702468]; GO_function: GO:0004386 - helicase activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006281 - DNA repair [Evidence IEA]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0001208 - histone H2A-H2B dimer displacement [Evidence IMP] [PMID 22199252]; GO_process: GO:0006289 - nucleotide-excision repair [Evidence IGI] [PMID 17023424]; GO_process: GO:0006283 - transcription-coupled nucleotide-excision repair [Evidence IGI] [PMID 17023424]; GO_process: GO:0006283 - transcription-coupled nucleotide-excision repair [Evidence IMP] [PMID 7957102]; DNA-dependent ATPase RAD26 3606579 RAD26 30032908 RAD26 Sugiyamaella lignohabitans DNA-dependent ATPase RAD26 XP_018735338.1 3602998 R 796027 CDS AWJ20_1140 30032910 3607747..3608973 A 1 NC_031672.1 3-ketoacyl-CoA thiolase with broad chain length specificity; cleaves 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA during beta-oxidation of fatty acids; GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IDA] [PMID 22984289]; GO_component: GO:0005782 - peroxisomal matrix [Evidence IDA] [PMID 7754706]; GO_component: GO:0005782 - peroxisomal matrix [Evidence IDA,IMP,ISM] [PMID 8125978]; GO_component: GO:0005777 - peroxisome [Evidence IEA,IEA]; GO_component: GO:0005777 - peroxisome [Evidence IDA] [PMID 19470242]; GO_function: GO:0003988 - acetyl-CoA C-acyltransferase activity [Evidence IEA]; GO_function: GO:0003988 - acetyl-CoA C-acyltransferase activity [Evidence IDA] [PMID 7754706]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 21124907]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016746 - transferase activity, transferring acyl groups [Evidence IEA]; GO_function: GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups [Evidence IEA]; GO_process: GO:0006635 - fatty acid beta-oxidation [Evidence IMP] [PMID 12819196]; GO_process: GO:0006631 - fatty acid metabolic process [Evidence IEA,IEA]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; acetyl-CoA C-acyltransferase 3608973 POT1 30032910 POT1 Sugiyamaella lignohabitans acetyl-CoA C-acyltransferase XP_018735339.1 3607747 D 796027 CDS AWJ20_1141 30032911 complement(3609156..3610046) A 1 NC_031672.1 uncharacterized protein 3610046 30032911 AWJ20_1141 Sugiyamaella lignohabitans uncharacterized protein XP_018735340.1 3609156 R 796027 CDS AWJ20_1142 30032912 complement(3610837..3613164) A 1 NC_031672.1 uncharacterized protein 3613164 30032912 AWJ20_1142 Sugiyamaella lignohabitans uncharacterized protein XP_018735341.1 3610837 R 796027 CDS AWJ20_1143 30032913 3614702..3617296 A 1 NC_031672.1 Pentafunctional arom protein; catalyzes steps 2 through 6 in the biosynthesis of chorismate, which is a precursor to aromatic amino acids; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0003855 - 3-dehydroquinate dehydratase activity [Evidence IEA,IEA]; GO_function: GO:0003855 - 3-dehydroquinate dehydratase activity [Evidence IDA] [PMID 6355828]; GO_function: GO:0003856 - 3-dehydroquinate synthase activity [Evidence IEA,IEA]; GO_function: GO:0003856 - 3-dehydroquinate synthase activity [Evidence IDA] [PMID 6355828]; GO_function: GO:0003866 - 3-phosphoshikimate 1-carboxyvinyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0003866 - 3-phosphoshikimate 1-carboxyvinyltransferase activity [Evidence IDA] [PMID 6355828]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA,IEA]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0016829 - lyase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0004764 - shikimate 3-dehydrogenase (NADP+) activity [Evidence IEA,IEA]; GO_function: GO:0004764 - shikimate 3-dehydrogenase (NADP+) activity [Evidence IDA] [PMID 6355828]; GO_function: GO:0004765 - shikimate kinase activity [Evidence IEA,IEA]; GO_function: GO:0004765 - shikimate kinase activity [Evidence IDA] [PMID 6355828]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016765 - transferase activity, transferring alkyl or aryl (other than methyl) groups [Evidence IEA]; GO_process: GO:0009073 - aromatic amino acid family biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0009423 - chorismate biosynthetic process [Evidence IEA]; GO_process: GO:0009423 - chorismate biosynthetic process [Evidence TAS] [PMID 1943992]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; pentafunctional protein ARO1p 3617296 ARO1 30032913 ARO1 Sugiyamaella lignohabitans pentafunctional protein ARO1p XP_018735342.1 3614702 D 796027 CDS AWJ20_1144 30032914 3618288..3619274 A 1 NC_031672.1 uncharacterized protein 3619274 30032914 AWJ20_1144 Sugiyamaella lignohabitans uncharacterized protein XP_018735343.1 3618288 D 796027 CDS AWJ20_1145 30032915 3620188..3621492 A 1 NC_031672.1 uncharacterized protein 3621492 30032915 AWJ20_1145 Sugiyamaella lignohabitans uncharacterized protein XP_018735344.1 3620188 D 796027 CDS AWJ20_1146 30032916 complement(3621741..3622838) A 1 NC_031672.1 uncharacterized protein 3622838 30032916 AWJ20_1146 Sugiyamaella lignohabitans uncharacterized protein XP_018735345.1 3621741 R 796027 CDS AWJ20_1147 30032917 complement(3624846..3626435) A 1 NC_031672.1 uncharacterized protein 3626435 30032917 AWJ20_1147 Sugiyamaella lignohabitans uncharacterized protein XP_018735346.1 3624846 R 796027 CDS AWJ20_1148 30032918 3624991..3625344 A 1 NC_031672.1 uncharacterized protein 3625344 30032918 AWJ20_1148 Sugiyamaella lignohabitans uncharacterized protein XP_018735347.1 3624991 D 796027 CDS AWJ20_1149 30032919 complement(3629161..3630783) A 1 NC_031672.1 General amino acid permease; Gap1p senses the presence of amino acid substrates to regulate localization to the plasma membrane when needed; essential for invasive growth; GO_component: GO:0030134 - ER to Golgi transport vesicle [Evidence IDA] [PMID 12499351]; GO_component: GO:0005768 - endosome [Evidence IDA] [PMID 15039776]; GO_component: GO:0000328 - fungal-type vacuole lumen [Evidence IDA] [PMID 15039776]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0005887 - integral component of plasma membrane [Evidence IDA] [PMID 9199164]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA,IEA]; GO_component: GO:0005771 - multivesicular body [Evidence IMP] [PMID 14523026]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 15623581]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 15707981]; GO_function: GO:0015193 - L-proline transmembrane transporter activity [Evidence IGI] [PMID 14968425]; GO_function: GO:0015171 - amino acid transmembrane transporter activity [Evidence IEA]; GO_function: GO:0015171 - amino acid transmembrane transporter activity [Evidence IMP] [PMID 6759873]; GO_function: GO:0015203 - polyamine transmembrane transporter activity [Evidence IMP] [PMID 15707981]; GO_process: GO:0003333 - amino acid transmembrane transport [Evidence IEA]; GO_process: GO:0006865 - amino acid transport [Evidence IEA,IEA]; GO_process: GO:0006865 - amino acid transport [Evidence IMP] [PMID 6759873]; GO_process: GO:0015846 - polyamine transport [Evidence IMP] [PMID 15707981]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; amino acid permease GAP1 3630783 GAP1 30032919 GAP1 Sugiyamaella lignohabitans amino acid permease GAP1 XP_018735348.1 3629161 R 796027 CDS AWJ20_1150 30032921 3632338..3633720 A 1 NC_031672.1 uncharacterized protein 3633720 30032921 AWJ20_1150 Sugiyamaella lignohabitans uncharacterized protein XP_018735349.1 3632338 D 796027 CDS AWJ20_1151 30032922 complement(3633952..3634524) A 1 NC_031672.1 N-myristoylated calcium-binding protein; may have a role in intracellular signaling through its regulation of the phosphatidylinositol 4-kinase Pik1p; member of the recoverin/frequenin branch of the EF-hand superfamily; GO_component: GO:0000139 - Golgi membrane [Evidence IDA] [PMID 17908202]; GO_component: GO:0033101 - cellular bud membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA]; GO_function: GO:0005509 - calcium ion binding [Evidence IEA]; GO_function: GO:0005509 - calcium ion binding [Evidence ISS] [PMID 10559922]; GO_function: GO:0008047 - enzyme activator activity [Evidence IDA] [PMID 10559922]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_process: GO:0009966 - regulation of signal transduction [Evidence IMP,IPI] [PMID 12477731]; Frq1p 3634524 FRQ1 30032922 FRQ1 Sugiyamaella lignohabitans Frq1p XP_018735350.1 3633952 R 796027 CDS AWJ20_1152 30032923 complement(3635864..3637162) A 1 NC_031672.1 uncharacterized protein 3637162 30032923 AWJ20_1152 Sugiyamaella lignohabitans uncharacterized protein XP_018735351.1 3635864 R 796027 CDS AWJ20_1153 30032924 3638036..3640648 A 1 NC_031672.1 Essential 113 kDa subunit of the exocyst complex; the exocyst mediates polarized targeting and tethering of post-Golgi secretory vesicles to active sites of exocytosis prior to SNARE-mediated fusion; interacts with and functions as a downstream effector of active, GTP-bound Sec4p, a Rab family GTPase; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 16478783]; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 16478783]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0000145 - exocyst [Evidence IEA]; GO_component: GO:0000145 - exocyst [Evidence IDA] [PMID 1512289]; GO_component: GO:0000145 - exocyst [Evidence IDA] [PMID 7615633]; GO_component: GO:0000145 - exocyst [Evidence IDA] [PMID 8978675]; GO_component: GO:0000131 - incipient cellular bud site [Evidence IDA] [PMID 16478783]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 19053807]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005628 - prospore membrane [Evidence IDA] [PMID 24390141]; GO_function: GO:0017137 - Rab GTPase binding [Evidence IDA] [PMID 10022848]; GO_process: GO:0006893 - Golgi to plasma membrane transport [Evidence IGI,IMP] [PMID 7026045]; GO_process: GO:0006887 - exocytosis [Evidence IEA]; GO_process: GO:0006887 - exocytosis [Evidence IMP] [PMID 6996832]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0006904 - vesicle docking involved in exocytosis [Evidence IEA]; GO_process: GO:0090522 - vesicle tethering involved in exocytosis [Evidence IC] [PMID 8978675]; Sec15p 3640648 SEC15 30032924 SEC15 Sugiyamaella lignohabitans Sec15p XP_018735352.1 3638036 D 796027 CDS AWJ20_1154 30032925 complement(3641606..3642016) A 1 NC_031672.1 mitogen-activated protein kinase kinase kinase BCK1 3642016 BCK1 30032925 BCK1 Sugiyamaella lignohabitans mitogen-activated protein kinase kinase kinase BCK1 XP_018735353.1 3641606 R 796027 CDS AWJ20_1155 30032926 complement(3642186..3644999) A 1 NC_031672.1 mitogen-activated protein kinase kinase kinase BCK1 3644999 BCK1 30032926 BCK1 Sugiyamaella lignohabitans mitogen-activated protein kinase kinase kinase BCK1 XP_018735354.1 3642186 R 796027 CDS AWJ20_1156 30032927 complement(3645225..3647564) A 1 NC_031672.1 uncharacterized protein 3647564 30032927 AWJ20_1156 Sugiyamaella lignohabitans uncharacterized protein XP_018735355.1 3645225 R 796027 CDS AWJ20_1157 30032928 complement(3648271..3649008) A 1 NC_031672.1 Mitochondrial ribosomal protein of the large subunit; GO_component: GO:0005762 - mitochondrial large ribosomal subunit [Evidence IPI] [PMID 12392552]; GO_component: GO:0005762 - mitochondrial large ribosomal subunit [Evidence IDA] [PMID 9151978]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IPI] [PMID 12392552]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IDA] [PMID 9151978]; GO_process: GO:0032543 - mitochondrial translation [Evidence IC] [PMID 12392552]; GO_process: GO:0032543 - mitochondrial translation [Evidence IC] [PMID 9151978]; mitochondrial 54S ribosomal protein YmL49 3649008 MRPL49 30032928 MRPL49 Sugiyamaella lignohabitans mitochondrial 54S ribosomal protein YmL49 XP_018735356.1 3648271 R 796027 CDS AWJ20_1158 30032929 3649470..3652370 A 1 NC_031672.1 Mitofusin; integral membrane protein involved in mitochondrial outer membrane tethering and fusion; role in mitochondrial genome maintenance; efficient tethering and degradation of Fzo1p requires an intact N-terminal GTPase domain; targeted for destruction by the ubiquitin ligase SCF-Mdm30p and the cytosolic ubiquitin-proteasome system; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0031307 - integral component of mitochondrial outer membrane [Evidence IDA] [PMID 11266460]; GO_component: GO:0031307 - integral component of mitochondrial outer membrane [Evidence IDA] [PMID 9685359]; GO_component: GO:0031307 - integral component of mitochondrial outer membrane [Evidence IDA] [PMID 9786948]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IDA] [PMID 11266460]; GO_component: GO:0031966 - mitochondrial membrane [Evidence IEA]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IEA,IEA,IEA]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IDA] [PMID 16407407]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0005525 - GTP binding [Evidence IEA,IEA]; GO_function: GO:0003924 - GTPase activity [Evidence IEA]; GO_function: GO:0003924 - GTPase activity [Evidence IDA] [PMID 19812251]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0042803 - protein homodimerization activity [Evidence IDA] [PMID 16624808]; GO_process: GO:0006184 - GTP catabolic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0008053 - mitochondrial fusion [Evidence IEA]; GO_process: GO:0008053 - mitochondrial fusion [Evidence IMP,IPI] [PMID 12808034]; GO_process: GO:0008053 - mitochondrial fusion [Evidence IMP] [PMID 9786948]; GO_process: GO:0051646 - mitochondrion localization [Evidence IGI] [PMID 23341591]; mitofusin 3652370 FZO1 30032929 FZO1 Sugiyamaella lignohabitans mitofusin XP_018735357.1 3649470 D 796027 CDS AWJ20_1159 30032930 complement(3652598..3653233) A 1 NC_031672.1 uncharacterized protein 3653233 30032930 AWJ20_1159 Sugiyamaella lignohabitans uncharacterized protein XP_018735358.1 3652598 R 796027 CDS AWJ20_1160 30032932 complement(3653524..3654804) A 1 NC_031672.1 Fungal Genetics Stock Center 12732; Fungal Genetics Stock Center 12731; queuine tRNA-ribosyltransferase 3654804 30032932 AWJ20_1160 Sugiyamaella lignohabitans queuine tRNA-ribosyltransferase XP_018735359.1 3653524 R 796027 CDS AWJ20_1161 30032933 3655196..3656764 A 1 NC_031672.1 Subunit of hexameric RecA-like ATPase Elp456 Elongator subcomplex; which is required for modification of wobble nucleosides in tRNA; required for Elongator structural integrity; GO_component: GO:0033588 - Elongator holoenzyme complex [Evidence IEA]; GO_component: GO:0033588 - Elongator holoenzyme complex [Evidence IDA] [PMID 11689709]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0016887 - ATPase activity [Evidence IDA] [PMID 22343726]; GO_function: GO:0000049 - tRNA binding [Evidence IDA] [PMID 22343726]; GO_process: GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence IEA]; GO_process: GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 11689709]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0002098 - tRNA wobble uridine modification [Evidence IMP] [PMID 18755837]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Elongator subunit ELP4 3656764 ELP4 30032933 ELP4 Sugiyamaella lignohabitans Elongator subunit ELP4 XP_018735360.1 3655196 D 796027 CDS AWJ20_1162 30032934 3657230..3659446 A 1 NC_031672.1 F-box protein containing five copies of the WD40 motif; controls cell cycle function, sulfur metabolism, and methionine biosynthesis as part of the ubiquitin ligase complex; interacts with and regulates Met4p, localizes within the nucleus; dissociation of Met30p from SCF complex in response to cadmium stress is regulated by Cdc48p; GO_component: GO:0019005 - SCF ubiquitin ligase complex [Evidence IDA] [PMID 9716410]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0043224 - nuclear SCF ubiquitin ligase complex [Evidence IDA] [PMID 10637232]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 10637232]; GO_function: GO:0043130 - ubiquitin binding [Evidence IDA] [PMID 21070969]; GO_process: GO:0006270 - DNA replication initiation [Evidence IMP] [PMID 15870262]; GO_process: GO:0000082 - G1/S transition of mitotic cell cycle [Evidence IMP] [PMID 15870262]; GO_process: GO:0031146 - SCF-dependent proteasomal ubiquitin-dependent protein catabolic process [Evidence IGI] [PMID 9716410]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0019344 - cysteine biosynthetic process [Evidence IEA]; GO_process: GO:0009086 - methionine biosynthetic process [Evidence IEA]; GO_process: GO:0000209 - protein polyubiquitination [Evidence IMP] [PMID 9716410]; GO_process: GO:0016567 - protein ubiquitination [Evidence IEA]; GO_process: GO:0016567 - protein ubiquitination [Evidence IGI,IPI] [PMID 9499404]; GO_process: GO:0030174 - regulation of DNA-dependent DNA replication initiation [Evidence IMP] [PMID 15870262]; GO_process: GO:0000083 - regulation of transcription involved in G1/S transition of mitotic cell cycle [Evidence IMP] [PMID 15870262]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0046685 - response to arsenic-containing substance [Evidence IDA] [PMID 15689486]; GO_process: GO:0046686 - response to cadmium ion [Evidence IDA] [PMID 15689486]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Met30p 3659446 MET30 30032934 MET30 Sugiyamaella lignohabitans Met30p XP_018735361.1 3657230 D 796027 CDS AWJ20_1163 30032935 complement(3659662..3662493) A 1 NC_031672.1 Chitin synthase II; catalyzes transfer of N-acetylglucosamine (GlcNAc) to chitin upon activation of zymogenic form; required for chitin synthesis in the primary septum during cytokinesis; localization regulated by Cdk1p during mitosis; phosphorylation by Dbf2p kinase regulates its dynamics and chitin synthesis during cytokinesis; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 8909536]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_function: GO:0004100 - chitin synthase activity [Evidence IEA,IEA]; GO_function: GO:0004100 - chitin synthase activity [Evidence IDA] [PMID 9990311]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA]; GO_function: GO:0016758 - transferase activity, transferring hexosyl groups [Evidence IEA]; GO_process: GO:0000916 - actomyosin contractile ring contraction [Evidence IMP] [PMID 11839781]; GO_process: GO:0000916 - actomyosin contractile ring contraction [Evidence IDA] [PMID 15772160]; GO_process: GO:0006031 - chitin biosynthetic process [Evidence IEA]; GO_process: GO:0006031 - chitin biosynthetic process [Evidence IMP] [PMID 22573892]; chitin synthase CHS2 3662493 CHS2 30032935 CHS2 Sugiyamaella lignohabitans chitin synthase CHS2 XP_018735362.1 3659662 R 796027 CDS AWJ20_1164 30032936 3664753..3665751 A 1 NC_031672.1 Copper-binding protein of mitochondrial inner membrane; required for cytochrome c oxidase activity and respiration; may function to deliver copper to cytochrome c oxidase; similar to thioredoxins; SCO1 has a paralog, SCO2, that arose from the whole genome duplication; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA,IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IDA] [PMID 1944230]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0005507 - copper ion binding [Evidence IEA]; GO_function: GO:0005507 - copper ion binding [Evidence IDA] [PMID 11546815]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0008379 - thioredoxin peroxidase activity [Evidence ISS] [PMID 10954195]; GO_process: GO:0006878 - cellular copper ion homeostasis [Evidence IEA]; GO_process: GO:0006825 - copper ion transport [Evidence IEA]; GO_process: GO:0006825 - copper ion transport [Evidence IGI,ISS] [PMID 8662933]; GO_process: GO:0006461 - protein complex assembly [Evidence IMP] [PMID 2835635]; GO_process: GO:0008535 - respiratory chain complex IV assembly [Evidence IEA]; GO_process: GO:0051775 - response to redox state [Evidence ISS] [PMID 15659396]; Sco1p 3665751 SCO1 30032936 SCO1 Sugiyamaella lignohabitans Sco1p XP_018735363.1 3664753 D 796027 CDS AWJ20_1165 30032937 complement(join(3665987..3666774,3666827..3666875)) A 1 NC_031672.1 protein AIM2 3666875 AIM2 30032937 AIM2 Sugiyamaella lignohabitans protein AIM2 XP_018735364.1 3665987 R 796027 CDS AWJ20_1166 30032938 3668445..3668996 A 1 NC_031672.1 Ankyrin-repeat containing, nucleocytoplasmic shuttling chaperone; prevents aggregation of Rps3p in the cytoplasm, associates with free Rps3p in the cytoplasm and delivers it to the 90S in the nucleus; required for 40S ribosomal subunit export, biogenesis and adaptation to osmotic and oxidative stress; expression repressed by heat shock; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA,IGI] [PMID 22570489]; GO_function: GO:0051082 - unfolded protein binding [Evidence IMP] [PMID 22570489]; GO_process: GO:0034599 - cellular response to oxidative stress [Evidence IMP] [PMID 15611164]; GO_process: GO:0032880 - regulation of protein localization [Evidence IMP,IPI] [PMID 22570489]; GO_process: GO:0006970 - response to osmotic stress [Evidence IMP] [PMID 15611164]; GO_process: GO:0042274 - ribosomal small subunit biogenesis [Evidence IGI,IMP] [PMID 15611164]; GO_process: GO:0000056 - ribosomal small subunit export from nucleus [Evidence IGI,IMP] [PMID 22570489]; Yar1p 3668996 YAR1 30032938 YAR1 Sugiyamaella lignohabitans Yar1p XP_018735365.1 3668445 D 796027 CDS AWJ20_1167 30032939 3681765..3683477 A 1 NC_031672.1 Transcription factor that binds IME1 Upstream Activation Signal (UAS)ru; COM2 transcription is regulated by Haa1p, Sok2p and Zap1p transcriptional activators; may bind the IME1 promoter under all growth conditions to negatively regulate its transcription in the absence of a positive regulator that binds more effectively; repressor activity may depend on phosphorylation by PKA; C. albicans homolog (MNL1) plays a role in adaptation to stress; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA,IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19111667]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19158363]; GO_process: GO:0008150 - biological_process [Evidence ND]; Com2p 3683477 COM2 30032939 COM2 Sugiyamaella lignohabitans Com2p XP_018735366.1 3681765 D 796027 CDS AWJ20_1168 30032940 3686938..3689553 A 1 NC_031672.1 serine/threonine protein kinase ATG1 3689553 ATG1 30032940 ATG1 Sugiyamaella lignohabitans serine/threonine protein kinase ATG1 XP_018735367.1 3686938 D 796027 CDS AWJ20_1169 30032941 3690408..3691727 A 1 NC_031672.1 Nucleolar protein that binds nuclear localization sequences; required for pre-rRNA processing and ribosome biogenesis; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11914276]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IDA] [PMID 19861225]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0003697 - single-stranded DNA binding [Evidence IDA] [PMID 7800479]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0006364 - rRNA processing [Evidence TAS] [PMID 10690410]; GO_process: GO:0006950 - response to stress [Evidence IEA]; GO_process: GO:0000028 - ribosomal small subunit assembly [Evidence TAS] [PMID 10690410]; Nsr1p 3691727 NSR1 30032941 NSR1 Sugiyamaella lignohabitans Nsr1p XP_018735368.1 3690408 D 796027 CDS AWJ20_1170 30032943 3692193..3693962 A 1 NC_031672.1 uncharacterized protein 3693962 30032943 AWJ20_1170 Sugiyamaella lignohabitans uncharacterized protein XP_018735369.1 3692193 D 796027 CDS AWJ20_1171 30032944 complement(3694014..3697646) A 1 NC_031672.1 Component of the small-subunit processome; required for nuclear export of tRNAs; may facilitate binding of Utp8p to aminoacylated tRNAs and their delivery to Los1p for export; conserved from yeast to mammals; GO_component: GO:0030686 - 90S preribosome [Evidence IDA] [PMID 12150911]; GO_component: GO:0032545 - CURI complex [Evidence IDA] [PMID 17452446]; GO_component: GO:0034456 - UTP-C complex [Evidence IDA] [PMID 17515605]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 12150911]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 15590835]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0032040 - small-subunit processome [Evidence IDA] [PMID 15590835]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0000462 - maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IC] [PMID 15590835]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0006364 - rRNA processing [Evidence IMP] [PMID 12837249]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; GO_process: GO:0006409 - tRNA export from nucleus [Evidence IMP] [PMID 23194188]; Utp22p 3697646 UTP22 30032944 UTP22 Sugiyamaella lignohabitans Utp22p XP_018735370.1 3694014 R 796027 CDS AWJ20_1172 30032945 join(3698294..3698351,3698438..3699990) A 1 NC_031672.1 Mitochondrial inner membrane protein; exposed to the mitochondrial matrix; associates with mitochondrial ribosomes; NOT required for respiratory growth; homolog of human Letm1, a protein implicated in Wolf-Hirschhorn syndrome; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IDA,ISS] [PMID 16476776]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 24390141]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006813 - potassium ion transport [Evidence IGI] [PMID 20197279]; GO_process: GO:0051204 - protein insertion into mitochondrial membrane [Evidence IMP] [PMID 16476776]; GO_process: GO:0015992 - proton transport [Evidence IGI] [PMID 20197279]; Ylh47p 3699990 YLH47 30032945 YLH47 Sugiyamaella lignohabitans Ylh47p XP_018735371.1 3698294 D 796027 CDS AWJ20_1173 30032946 complement(3700318..3700761) A 1 NC_031672.1 deoxyuridine triphosphate diphosphatase (dUTPase); catalyzes hydrolysis of dUTP to dUMP and PPi, thereby preventing incorporation of uracil into DNA during replication; critical for the maintenance of genetic stability; also has diphosphatase activity on deoxyinosine triphosphate; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0035870 - dITP diphosphatase activity [Evidence IDA] [PMID 21548881]; GO_function: GO:0004170 - dUTP diphosphatase activity [Evidence IEA,IEA]; GO_function: GO:0004170 - dUTP diphosphatase activity [Evidence IDA,IMP] [PMID 21548881]; GO_function: GO:0004170 - dUTP diphosphatase activity [Evidence IMP] [PMID 8223452]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA,IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_process: GO:0035863 - dITP catabolic process [Evidence IDA] [PMID 21548881]; GO_process: GO:0006226 - dUMP biosynthetic process [Evidence IEA]; GO_process: GO:0046081 - dUTP catabolic process [Evidence IDA,IMP] [PMID 21548881]; GO_process: GO:0046080 - dUTP metabolic process [Evidence IEA]; GO_process: GO:0009117 - nucleotide metabolic process [Evidence IEA]; GO_process: GO:0009213 - pyrimidine deoxyribonucleoside triphosphate catabolic process [Evidence IMP] [PMID 8223452]; bifunctional dITP/dUTP diphosphatase 3700761 DUT1 30032946 DUT1 Sugiyamaella lignohabitans bifunctional dITP/dUTP diphosphatase XP_018735372.1 3700318 R 796027 CDS AWJ20_1174 30032947 3704147..3706240 A 1 NC_031672.1 Mitochondrial protein that may have a role in phospholipid metabolism; inner membrane protein with similarity to Mdm32p; required for normal mitochondrial morphology and inheritance; interacts genetically with MMM1, MMM2, MDM10, MDM12, and MDM34; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA,IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IDA] [PMID 15631992]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006873 - cellular ion homeostasis [Evidence IMP] [PMID 16020778]; GO_process: GO:0000001 - mitochondrion inheritance [Evidence IMP] [PMID 15631992]; GO_process: GO:0007005 - mitochondrion organization [Evidence IEA]; GO_process: GO:0007005 - mitochondrion organization [Evidence IMP] [PMID 11907266]; GO_process: GO:0007005 - mitochondrion organization [Evidence IMP] [PMID 16020778]; GO_process: GO:1900208 - regulation of cardiolipin metabolic process [Evidence IGI] [PMID 22403410]; Mdm31p 3706240 MDM31 30032947 MDM31 Sugiyamaella lignohabitans Mdm31p XP_018735373.1 3704147 D 796027 CDS AWJ20_1175 30032948 complement(3706396..3707745) A 1 NC_031672.1 Essential protein that promotes the first step of splicing; required for the final stages of spliceosome maturation; interacts with Prp2p, which may release Spp2p from the spliceosome following the first cleavage reaction; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005681 - spliceosomal complex [Evidence IEA]; GO_component: GO:0005681 - spliceosomal complex [Evidence IDA] [PMID 7493316]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_process: GO:0008380 - RNA splicing [Evidence IEA]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0000398 - mRNA splicing, via spliceosome [Evidence IMP] [PMID 7493316]; Spp2p 3707745 SPP2 30032948 SPP2 Sugiyamaella lignohabitans Spp2p XP_018735374.1 3706396 R 796027 CDS AWJ20_1176 30032949 3708104..3709432 A 1 NC_031672.1 Protein required for normal mitochondrial morphology; mitochondrial inner membrane protein; may be involved in fission of the inner membrane; forms a homo-oligomeric complex; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IDA] [PMID 12591915]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0007007 - inner mitochondrial membrane organization [Evidence IGI,IMP] [PMID 12591915]; GO_process: GO:0007005 - mitochondrion organization [Evidence IMP] [PMID 11907266]; She9p 3709432 SHE9 30032949 SHE9 Sugiyamaella lignohabitans She9p XP_018735375.1 3708104 D 796027 CDS AWJ20_1177 30032950 complement(3710688..3711962) A 1 NC_031672.1 ATPase of the 19S regulatory particle of the 26S proteasome; one of ATPases of the regulatory particle; involved in the degradation of ubiquitinated substrates; substrate of N-acetyltransferase B; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0000502 - proteasome complex [Evidence IEA]; GO_component: GO:0008540 - proteasome regulatory particle, base subcomplex [Evidence IDA] [PMID 11742986]; GO_component: GO:0008540 - proteasome regulatory particle, base subcomplex [Evidence IDA] [PMID 9741626]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016887 - ATPase activity [Evidence ISS] [PMID 9584156]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_process: GO:0045899 - positive regulation of RNA polymerase II transcriptional preinitiation complex assembly [Evidence IMP] [PMID 19843524]; GO_process: GO:0070682 - proteasome regulatory particle assembly [Evidence IMP] [PMID 19412160]; GO_process: GO:0030163 - protein catabolic process [Evidence IEA]; GO_process: GO:0006511 - ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 9724628]; proteasome regulatory particle base subunit RPT3 3711962 RPT3 30032950 RPT3 Sugiyamaella lignohabitans proteasome regulatory particle base subunit RPT3 XP_018735376.1 3710688 R 796027 CDS AWJ20_1178 30032951 complement(3712513..3713988) A 1 NC_031672.1 uncharacterized protein 3713988 30032951 AWJ20_1178 Sugiyamaella lignohabitans uncharacterized protein XP_018735377.1 3712513 R 796027 CDS AWJ20_1179 30032952 3715461..3718538 A 1 NC_031672.1 hypothetical protein; required for wild-type growth rate on galactose and mannose; localizes to COPI coated vesicles and the Golgi apparatus; GO_component: GO:0030137 - COPI-coated vesicle [Evidence IDA] [PMID 14562095]; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA,IEA]; GO_component: GO:0005794 - Golgi apparatus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; Sgm1p 3718538 SGM1 30032952 SGM1 Sugiyamaella lignohabitans Sgm1p XP_018735378.1 3715461 D 796027 CDS AWJ20_1180 30032954 complement(3718860..3719477) A 1 NC_031672.1 Xanthine-guanine phosphoribosyl transferase; required for xanthine utilization and for optimal utilization of guanine; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0004422 - hypoxanthine phosphoribosyltransferase activity [Evidence IGI] [PMID 10217799]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA]; GO_function: GO:0000310 - xanthine phosphoribosyltransferase activity [Evidence IMP] [PMID 10217799]; GO_process: GO:0032265 - XMP salvage [Evidence IMP] [PMID 10217799]; GO_process: GO:0046100 - hypoxanthine metabolic process [Evidence IGI] [PMID 10217799]; GO_process: GO:0009116 - nucleoside metabolic process [Evidence IEA]; GO_process: GO:0006164 - purine nucleotide biosynthetic process [Evidence IEA]; xanthine phosphoribosyltransferase 3719477 XPT1 30032954 XPT1 Sugiyamaella lignohabitans xanthine phosphoribosyltransferase XP_018735379.1 3718860 R 796027 CDS AWJ20_1181 30032955 complement(3720160..3722319) A 1 NC_031672.1 Subunit of U3-containing Small Subunit (SSU) processome complex; involved in production of 18S rRNA and assembly of small ribosomal subunit; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 12068309]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0033553 - rDNA heterochromatin [Evidence IDA] [PMID 15489292]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0032040 - small-subunit processome [Evidence IDA] [PMID 12068309]; GO_component: GO:0034455 - t-UTP complex [Evidence IDA] [PMID 17515605]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0000462 - maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 12068309]; GO_process: GO:0045943 - positive regulation of transcription from RNA polymerase I promoter [Evidence IMP] [PMID 15489292]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Utp5p 3722319 UTP5 30032955 UTP5 Sugiyamaella lignohabitans Utp5p XP_018735380.1 3720160 R 796027 CDS AWJ20_1182 30032956 3723730..3724194 A 1 NC_031672.1 Subunit of a heterodimeric NC2 transcription regulator complex; complex binds to TBP and can repress transcription by preventing preinitiation complex assembly or stimulate activated transcription; homologous to human NC2beta; complex also includes Bur6p; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0017054 - negative cofactor 2 complex [Evidence IDA] [PMID 8948634]; GO_component: GO:0017054 - negative cofactor 2 complex [Evidence IPI] [PMID 9023340]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 21976730]; GO_function: GO:0001132 - TBP-class protein binding RNA polymerase II transcription factor activity [Evidence IDA] [PMID 8948634]; GO_function: GO:0001132 - TBP-class protein binding RNA polymerase II transcription factor activity [Evidence IPI] [PMID 9096360]; GO_function: GO:0001129 - TBP-class protein binding RNA polymerase II transcription factor activity involved in preinitiation complex assembly [Evidence IMP] [PMID 18048413]; GO_function: GO:0003682 - chromatin binding [Evidence IDA] [PMID 18703679]; GO_function: GO:0001047 - core promoter binding [Evidence IDA] [PMID 18703679]; GO_function: GO:0046982 - protein heterodimerization activity [Evidence IEA]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO_function: GO:0003713 - transcription coactivator activity [Evidence IDA] [PMID 8948634]; GO_function: GO:0003714 - transcription corepressor activity [Evidence IGI,IMP] [PMID 10713169]; GO_function: GO:0003714 - transcription corepressor activity [Evidence IDA,IMP] [PMID 9023340]; GO_process: GO:0051123 - RNA polymerase II transcriptional preinitiation complex assembly [Evidence IMP] [PMID 18048413]; GO_process: GO:1900446 - negative regulation of tRNA transcription from RNA polymerase III promoter [Evidence IMP] [PMID 9023340]; GO_process: GO:0000122 - negative regulation of transcription from RNA polymerase II promoter [Evidence IGI,IMP] [PMID 10713169]; GO_process: GO:0000122 - negative regulation of transcription from RNA polymerase II promoter [Evidence IDA] [PMID 8948634]; GO_process: GO:0000122 - negative regulation of transcription from RNA polymerase II promoter [Evidence IDA,IMP] [PMID 9023340]; GO_process: GO:0000122 - negative regulation of transcription from RNA polymerase II promoter [Evidence IDA] [PMID 9096360]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IDA] [PMID 8948634]; GO_process: GO:0061408 - positive regulation of transcription from RNA polymerase II promoter in response to heat stress [Evidence IMP] [PMID 18048413]; GO_process: GO:0045898 - regulation of RNA polymerase II transcriptional preinitiation complex assembly [Evidence IMP] [PMID 21976730]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Ncb2p 3724194 NCB2 30032956 NCB2 Sugiyamaella lignohabitans Ncb2p XP_018735381.1 3723730 D 796027 CDS AWJ20_1183 30032957 complement(3724659..3726926) A 1 NC_031672.1 Karyopherin; a carrier protein involved in nuclear import of proteins; importin beta homolog; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 9852143]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0034399 - nuclear periphery [Evidence IDA] [PMID 22842922]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9852143]; GO_function: GO:0008536 - Ran GTPase binding [Evidence IEA]; GO_function: GO:0008565 - protein transporter activity [Evidence IMP] [PMID 9755161]; GO_function: GO:0008565 - protein transporter activity [Evidence IDA] [PMID 9852143]; GO_process: GO:0006886 - intracellular protein transport [Evidence IEA]; GO_process: GO:0006606 - protein import into nucleus [Evidence IMP,ISS] [PMID 9755161]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Nmd5p 3726926 NMD5 30032957 NMD5 Sugiyamaella lignohabitans Nmd5p XP_018735382.1 3724659 R 796027 CDS AWJ20_1184 30032958 complement(3727154..3727954) A 1 NC_031672.1 Karyopherin; a carrier protein involved in nuclear import of proteins; importin beta homolog; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 9852143]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0034399 - nuclear periphery [Evidence IDA] [PMID 22842922]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9852143]; GO_function: GO:0008536 - Ran GTPase binding [Evidence IEA]; GO_function: GO:0008565 - protein transporter activity [Evidence IMP] [PMID 9755161]; GO_function: GO:0008565 - protein transporter activity [Evidence IDA] [PMID 9852143]; GO_process: GO:0006886 - intracellular protein transport [Evidence IEA]; GO_process: GO:0006606 - protein import into nucleus [Evidence IMP,ISS] [PMID 9755161]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Nmd5p 3727954 NMD5 30032958 NMD5 Sugiyamaella lignohabitans Nmd5p XP_018735383.1 3727154 R 796027 CDS AWJ20_1185 30032959 3730168..3731964 A 1 NC_031672.1 Alpha 1,2-mannosyltransferase; involved in glycosyl phosphatidyl inositol (GPI) biosynthesis; required for addition of the fourth, side branching mannose to the GPI core structure; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence TAS] [PMID 11356840]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0004584 - dolichyl-phosphate-mannose-glycolipid alpha-mannosyltransferase activity [Evidence IMP] [PMID 11356840]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA,IEA]; GO_process: GO:0006506 - GPI anchor biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0006506 - GPI anchor biosynthetic process [Evidence IMP] [PMID 11356840]; GO_process: GO:0006276 - plasmid maintenance [Evidence IMP] [PMID 2005867]; Smp3p 3731964 SMP3 30032959 SMP3 Sugiyamaella lignohabitans Smp3p XP_018735384.1 3730168 D 796027 CDS AWJ20_1186 30032960 complement(3732129..3733115) A 1 NC_031672.1 Histidinol-phosphate aminotransferase; catalyzes the seventh step in histidine biosynthesis; responsive to general control of amino acid biosynthesis; mutations cause histidine auxotrophy and sensitivity to Cu, Co, and Ni salts; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0080130 - L-phenylalanine:2-oxoglutarate aminotransferase activity [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0004400 - histidinol-phosphate transaminase activity [Evidence IEA,IEA]; GO_function: GO:0004400 - histidinol-phosphate transaminase activity [Evidence IMP] [PMID 14190241]; GO_function: GO:0030170 - pyridoxal phosphate binding [Evidence IEA]; GO_function: GO:0008483 - transaminase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA,IEA]; GO_process: GO:0009058 - biosynthetic process [Evidence IEA]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0000105 - histidine biosynthetic process [Evidence IEA,IEA,IEA]; GO_process: GO:0000105 - histidine biosynthetic process [Evidence IMP] [PMID 14190241]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; histidinol-phosphate transaminase 3733115 HIS5 30032960 HIS5 Sugiyamaella lignohabitans histidinol-phosphate transaminase XP_018735385.1 3732129 R 796027 CDS AWJ20_1187 30032961 join(3734031..3734087,3734146..3738594) A 1 NC_031672.1 FG-nucleoporin NUP159 3738594 NUP159 30032961 NUP159 Sugiyamaella lignohabitans FG-nucleoporin NUP159 XP_018735386.1 3734031 D 796027 CDS AWJ20_1188 30032962 3742949..3743407 A 1 NC_031672.1 uncharacterized protein 3743407 30032962 AWJ20_1188 Sugiyamaella lignohabitans uncharacterized protein XP_018735387.1 3742949 D 796027 CDS AWJ20_1189 30032963 complement(3745204..3745623) A 1 NC_031672.1 RNA polymerase II subunit B16; forms two subunit dissociable complex with Rpb4p; the Rpb4p/Rpb7p subcomplex regulates cellular lifespan via an mRNA decay process; involved in recruitment of 3'-end processing factors to transcribing RNA polymerase II complex and in export of mRNA to cytoplasm under stress conditions; also involved in translation initiation; GO_component: GO:0005665 - DNA-directed RNA polymerase II, core complex [Evidence IDA] [PMID 1331084]; GO_component: GO:0005665 - DNA-directed RNA polymerase II, core complex [Evidence IDA] [PMID 2183013]; GO_component: GO:0005665 - DNA-directed RNA polymerase II, core complex [Evidence IDA] [PMID 2186966]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 17056745]; GO_component: GO:0000932 - cytoplasmic mRNA processing body [Evidence IEA]; GO_component: GO:0000932 - cytoplasmic mRNA processing body [Evidence IDA] [PMID 17875743]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 17056745]; GO_function: GO:0003899 - DNA-directed RNA polymerase activity [Evidence IEA,IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003968 - RNA-directed RNA polymerase activity [Evidence IDA] [PMID 18004386]; GO_function: GO:0003697 - single-stranded DNA binding [Evidence IDA,IMP] [PMID 11087726]; GO_function: GO:0003727 - single-stranded RNA binding [Evidence IDA,IMP] [PMID 11087726]; GO_function: GO:0031369 - translation initiation factor binding [Evidence IPI] [PMID 21074047]; GO_process: GO:0000291 - nuclear-transcribed mRNA catabolic process, exonucleolytic [Evidence IGI] [PMID 17875743]; GO_process: GO:0060213 - positive regulation of nuclear-transcribed mRNA poly(A) tail shortening [Evidence IMP] [PMID 17875743]; GO_process: GO:0045948 - positive regulation of translational initiation [Evidence IMP] [PMID 21074047]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IGI] [PMID 10082533]; GO_process: GO:0006367 - transcription initiation from RNA polymerase II promoter [Evidence IDA] [PMID 11087726]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; DNA-directed RNA polymerase II subunit RPB7 3745623 RPB7 30032963 RPB7 Sugiyamaella lignohabitans DNA-directed RNA polymerase II subunit RPB7 XP_018735388.1 3745204 R 796027 CDS AWJ20_1190 30032965 3746735..3747553 A 1 NC_031672.1 uncharacterized protein 3747553 30032965 AWJ20_1190 Sugiyamaella lignohabitans uncharacterized protein XP_018735389.1 3746735 D 796027 CDS AWJ20_1191 30032966 3747650..3747970 A 1 NC_031672.1 uncharacterized protein 3747970 30032966 AWJ20_1191 Sugiyamaella lignohabitans uncharacterized protein XP_018735390.1 3747650 D 796027 CDS AWJ20_1192 30032967 3748246..3749403 A 1 NC_031672.1 uncharacterized protein 3749403 30032967 AWJ20_1192 Sugiyamaella lignohabitans uncharacterized protein XP_018735391.1 3748246 D 796027 CDS AWJ20_1193 30032968 complement(3749585..3750481) A 1 NC_031672.1 hypothetical protein; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies; null mutant displays elevated frequency of mitochondrial genome loss; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0016872 - intramolecular lyase activity [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; Aim18p 3750481 AIM18 30032968 AIM18 Sugiyamaella lignohabitans Aim18p XP_018735392.1 3749585 R 796027 CDS AWJ20_1194 30032969 3757948..3759528 A 1 NC_031672.1 Nuclear protein involved in early steps of ribosome biogenesis; physically interacts with the ribosomal protein Rpl3p; essential gene; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 10684247]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IMP,IPI] [PMID 11728313]; Rrb1p 3759528 RRB1 30032969 RRB1 Sugiyamaella lignohabitans Rrb1p XP_018735393.1 3757948 D 796027 CDS AWJ20_1195 30032970 complement(3762461..3765967) A 1 NC_031672.1 uncharacterized protein 3765967 30032970 AWJ20_1195 Sugiyamaella lignohabitans uncharacterized protein XP_018735394.1 3762461 R 796027 CDS AWJ20_1196 30032971 3773428..3774606 A 1 NC_031672.1 peroxin-6 3774606 PEX6 30032971 PEX6 Sugiyamaella lignohabitans peroxin-6 XP_018735395.1 3773428 D 796027 CDS AWJ20_1197 30032972 3774699..3777347 A 1 NC_031672.1 AAA-peroxin; heterodimerizes with AAA-peroxin Pex1p and participates in the recycling of peroxisomal signal receptor Pex5p from the peroxisomal membrane to the cystosol; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 12808025]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005778 - peroxisomal membrane [Evidence IEA]; GO_component: GO:0005777 - peroxisome [Evidence IEA]; GO_component: GO:0005777 - peroxisome [Evidence IDA,IMP] [PMID 12808025]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016887 - ATPase activity [Evidence IMP] [PMID 15634331]; GO_function: GO:0016887 - ATPase activity [Evidence ISS] [PMID 8241279]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_function: GO:0046982 - protein heterodimerization activity [Evidence IMP,IPI] [PMID 15634331]; GO_function: GO:0046982 - protein heterodimerization activity [Evidence IPI] [PMID 16007078]; GO_function: GO:0046982 - protein heterodimerization activity [Evidence IPI] [PMID 16911527]; GO_process: GO:0007031 - peroxisome organization [Evidence IEA]; GO_process: GO:0016562 - protein import into peroxisome matrix, receptor recycling [Evidence IDA,IGI,IMP] [PMID 16007078]; GO_process: GO:0001302 - replicative cell aging [Evidence IGI] [PMID 17465979]; AAA family ATPase peroxin 6 3777347 PEX6 30032972 PEX6 Sugiyamaella lignohabitans AAA family ATPase peroxin 6 XP_018735396.1 3774699 D 796027 CDS AWJ20_1198 30032973 complement(3776324..3776563) A 1 NC_031672.1 uncharacterized protein 3776563 30032973 AWJ20_1198 Sugiyamaella lignohabitans uncharacterized protein XP_018735397.1 3776324 R 796027 CDS AWJ20_1199 30032974 3777909..3778628 A 1 NC_031672.1 uncharacterized protein 3778628 30032974 AWJ20_1199 Sugiyamaella lignohabitans uncharacterized protein XP_018735398.1 3777909 D 796027 CDS AWJ20_1200 30032977 complement(3779055..3779900) A 1 NC_031672.1 Acidic protein of the mitochondrial matrix; involved in oxidative phosphorylation; related to the human complement receptor gC1q-R; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA,IEA]; GO_component: GO:0005759 - mitochondrial matrix [Evidence IDA] [PMID 9305894]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0009060 - aerobic respiration [Evidence IMP] [PMID 9305894]; Mam33p 3779900 MAM33 30032977 MAM33 Sugiyamaella lignohabitans Mam33p XP_018735399.1 3779055 R 796027 CDS AWJ20_1201 30032978 complement(3780470..3782260) A 1 NC_031672.1 B-type cyclin CLB4 3782260 CLB4 30032978 CLB4 Sugiyamaella lignohabitans B-type cyclin CLB4 XP_018735400.1 3780470 R 796027 CDS AWJ20_1202 30032979 3791855..3792763 A 1 NC_031672.1 uncharacterized protein 3792763 30032979 AWJ20_1202 Sugiyamaella lignohabitans uncharacterized protein XP_018735401.1 3791855 D 796027 CDS AWJ20_1203 30032980 3795906..3798137 A 1 NC_031672.1 RNA polymerase I termination factor; binds to rDNA terminator element, required for efficient Pol I termination; required for rDNA silencing at NTS1; facilities association of Sir2p with NTS1, contributes to rDNA stability and cell longevity; interacts physically with Fob1p and RENT subunits, Sir2p and Net1p; may interact with ribosomes, based on co-purification experiments; Myb-like DNA-binding protein; NSI1 has a paralog, REB1, that arose from the whole genome duplication; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 22362748]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0033553 - rDNA heterochromatin [Evidence IDA] [PMID 22362748]; GO_component: GO:0005840 - ribosome [Evidence IDA] [PMID 16702403]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0003677 - DNA binding [Evidence IPI] [PMID 15343339]; GO_function: GO:0003682 - chromatin binding [Evidence IEA]; GO_process: GO:0000183 - chromatin silencing at rDNA [Evidence IMP] [PMID 22362748]; GO_process: GO:1900008 - negative regulation of extrachromosomal rDNA circle accumulation involved in replicative cell aging [Evidence IMP] [PMID 22362748]; GO_process: GO:0001185 - termination of RNA polymerase I transcription from promoter for nuclear large rRNA transcript [Evidence IDA,IMP] [PMID 22805593]; Nsi1p 3798137 NSI1 30032980 NSI1 Sugiyamaella lignohabitans Nsi1p XP_018735402.1 3795906 D 796027 CDS AWJ20_1204 30032981 3798633..3799103 A 1 NC_031672.1 uncharacterized protein 3799103 30032981 AWJ20_1204 Sugiyamaella lignohabitans uncharacterized protein XP_018735403.1 3798633 D 796027 CDS AWJ20_1205 30032982 complement(3798663..3798896) A 1 NC_031672.1 Protein component of the small (40S) ribosomal subunit; homologous to mammalian ribosomal protein S11 and bacterial S17; N-terminally propionylated in vivo; RPS11A has a paralog, RPS11B, that arose from the whole genome duplication; GO_component: GO:0030686 - 90S preribosome [Evidence IDA] [PMID 12150911]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0022627 - cytosolic small ribosomal subunit [Evidence IDA] [PMID 6814480]; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA,IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0019843 - rRNA binding [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IDA] [PMID 6814480]; GO_process: GO:0002181 - cytoplasmic translation [Evidence IC] [PMID 6814480]; GO_process: GO:0000462 - maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IGI] [PMID 16246728]; GO_process: GO:0000028 - ribosomal small subunit assembly [Evidence IMP] [PMID 8070651]; GO_process: GO:0006412 - translation [Evidence IEA]; ribosomal 40S subunit protein S11A 3798896 RPS11A 30032982 RPS11A Sugiyamaella lignohabitans ribosomal 40S subunit protein S11A XP_018735404.1 3798663 R 796027 CDS AWJ20_1206 30032983 3803019..3804206 A 1 NC_031672.1 RNA binding protein; has similarity to mammalian heterogeneous nuclear RNP K protein, involved in the regulation of telomere position effect and telomere length; relative distribution to the nucleus increases upon DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 23222640]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 24390141]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 23222640]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA,IEA]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 15351640]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_process: GO:0010834 - telomere maintenance via telomere shortening [Evidence IGI] [PMID 11739741]; Pbp2p 3804206 PBP2 30032983 PBP2 Sugiyamaella lignohabitans Pbp2p XP_018735405.1 3803019 D 796027 CDS AWJ20_1207 30032984 join(3808486..3808546,3808782..3809680) A 1 NC_031672.1 sedoheptulose-7-phosphate:D-glyceraldehyde-3- phosphate transaldolase NQM1 3809680 NQM1 30032984 NQM1 Sugiyamaella lignohabitans sedoheptulose-7-phosphate:D-glyceraldehyde-3- phosphate transaldolase NQM1 XP_018735406.1 3808486 D 796027 CDS AWJ20_1208 30032985 3811863..3812912 A 1 NC_031672.1 Dihydroorotase; catalyzes the third enzymatic step in the de novo biosynthesis of pyrimidines, converting carbamoyl-L-aspartate into dihydroorotate; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0004151 - dihydroorotase activity [Evidence IEA,IEA]; GO_function: GO:0004151 - dihydroorotase activity [Evidence IMP,ISS] [PMID 2897615]; GO_function: GO:0004151 - dihydroorotase activity [Evidence IMP] [PMID 4550660]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016812 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_process: GO:0044205 - 'de novo' UMP biosynthetic process [Evidence IEA]; GO_process: GO:0006207 - 'de novo' pyrimidine nucleobase biosynthetic process [Evidence IMP] [PMID 4550660]; GO_process: GO:0019856 - pyrimidine nucleobase biosynthetic process [Evidence IEA]; GO_process: GO:0006221 - pyrimidine nucleotide biosynthetic process [Evidence IEA]; GO_process: GO:0006221 - pyrimidine nucleotide biosynthetic process [Evidence IMP] [PMID 2897615]; dihydroorotase 3812912 URA4 30032985 URA4 Sugiyamaella lignohabitans dihydroorotase XP_018735407.1 3811863 D 796027 CDS AWJ20_1209 30032986 complement(3812984..3814627) A 1 NC_031672.1 uncharacterized protein 3814627 30032986 AWJ20_1209 Sugiyamaella lignohabitans uncharacterized protein XP_018735408.1 3812984 R 796027 CDS AWJ20_1210 30032988 complement(3815010..3817226) A 1 NC_031672.1 uncharacterized protein 3817226 30032988 AWJ20_1210 Sugiyamaella lignohabitans uncharacterized protein XP_018735409.1 3815010 R 796027 CDS AWJ20_1211 30032989 3817713..3819200 A 1 NC_031672.1 meiotic chromosome segregation protein 3819200 30032989 AWJ20_1211 Sugiyamaella lignohabitans meiotic chromosome segregation protein XP_018735410.1 3817713 D 796027 CDS AWJ20_1212 30032990 complement(3819298..3823311) A 1 NC_031672.1 uncharacterized protein 3823311 30032990 AWJ20_1212 Sugiyamaella lignohabitans uncharacterized protein XP_018735411.1 3819298 R 796027 CDS AWJ20_1213 30032991 complement(3823430..3824857) A 1 NC_031672.1 Dedicator of cytokinesis protein 4 CRK binding protein 3824857 30032991 AWJ20_1213 Sugiyamaella lignohabitans Dedicator of cytokinesis protein 4 CRK binding protein XP_018735412.1 3823430 R 796027 CDS AWJ20_1214 30032992 complement(3826412..3827506) A 1 NC_031672.1 Conserved NADPH oxidoreductase containing flavin mononucleotide (FMN); responsible for geraniol reduction into citronellol during fermentation; homologous to Oye3p with different ligand binding and catalytic properties; may be involved in sterol metabolism, oxidative stress response, and programmed cell death; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 17897954]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0010181 - FMN binding [Evidence IEA]; GO_function: GO:0003959 - NADPH dehydrogenase activity [Evidence IEA]; GO_function: GO:0003959 - NADPH dehydrogenase activity [Evidence IDA,ISS] [PMID 8454584]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0018548 - pentaerythritol trinitrate reductase activity [Evidence IEA]; GO_function: GO:0052690 - trichloro-p-hydroquinone reductive dehalogenase activity [Evidence IEA]; GO_process: GO:0006915 - apoptotic process [Evidence IMP] [PMID 17897954]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; Oye2p 3827506 OYE2 30032992 OYE2 Sugiyamaella lignohabitans Oye2p XP_018735413.1 3826412 R 796027 CDS AWJ20_1215 30032993 3828177..3828689 A 1 NC_031672.1 Subunit of the 19S regulatory particle of the 26S proteasome lid; acts as a ubiquitin receptor for the proteasome; null mutants accumulate ubiquitinated Gcn4p and display decreased 26S proteasome stability; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0000502 - proteasome complex [Evidence IEA]; GO_component: GO:0008541 - proteasome regulatory particle, lid subcomplex [Evidence IDA] [PMID 11029046]; GO_component: GO:0034515 - proteasome storage granule [Evidence IDA] [PMID 18504300]; GO_function: GO:0043130 - ubiquitin binding [Evidence IDA] [PMID 18497817]; GO_process: GO:0006511 - ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 11029046]; GO_process: GO:0006511 - ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 17499717]; proteasome regulatory particle lid subunit RPN13 3828689 RPN13 30032993 RPN13 Sugiyamaella lignohabitans proteasome regulatory particle lid subunit RPN13 XP_018735414.1 3828177 D 796027 CDS AWJ20_1216 30032994 3830841..3838517 A 1 NC_031672.1 Protein required for nuclear migration; component of the mitochondria-ER-cortex-ancor (MECA); required for the association of mitochondria with the cell cortex and for accurate distribution of mitochondrial network; interacts with Mdm36p to link the ER and motochondria at the cortex; localizes to the mother cell cortex and the bud tip; may mediate interactions of dynein and cytoplasmic microtubules with the cell cortex; GO_component: GO:0005938 - cell cortex [Evidence IEA]; GO_component: GO:0005938 - cell cortex [Evidence IDA] [PMID 11121446]; GO_component: GO:0005934 - cellular bud tip [Evidence IEA]; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 11121446]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0005543 - phospholipid binding [Evidence IEA]; GO_function: GO:0015631 - tubulin binding [Evidence IPI] [PMID 11266443]; GO_process: GO:0032065 - cortical protein anchoring [Evidence IEA]; GO_process: GO:0000226 - microtubule cytoskeleton organization [Evidence IMP] [PMID 11121446]; GO_process: GO:0000266 - mitochondrial fission [Evidence IMP] [PMID 17336903]; GO_process: GO:0000001 - mitochondrion inheritance [Evidence IGI] [PMID 17336903]; GO_process: GO:0051646 - mitochondrion localization [Evidence IGI,IMP,IPI] [PMID 23341591]; GO_process: GO:0030473 - nuclear migration along microtubule [Evidence IMP] [PMID 11121446]; Num1p 3838517 NUM1 30032994 NUM1 Sugiyamaella lignohabitans Num1p XP_018735415.1 3830841 D 796027 CDS AWJ20_1217 30032995 complement(3838762..3840384) A 1 NC_031672.1 proteinase A 3840384 PEP4 30032995 PEP4 Sugiyamaella lignohabitans proteinase A XP_018735416.1 3838762 R 796027 CDS AWJ20_1218 30032996 complement(3843047..3844129) A 1 NC_031672.1 Co-chaperone for Hsp40p; anchored in the ER membrane; with its homolog Ydj1p promotes ER-associated protein degradation (ERAD) of integral membrane substrates; similar to E. coli DnaJ; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 14562095]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IDA,ISS] [PMID 12514182]; GO_function: GO:0001671 - ATPase activator activity [Evidence IDA] [PMID 15342786]; GO_process: GO:0030433 - ER-associated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 15252059]; GO_process: GO:0030433 - ER-associated ubiquitin-dependent protein catabolic process [Evidence IGI,IMP] [PMID 15342786]; Hlj1p 3844129 HLJ1 30032996 HLJ1 Sugiyamaella lignohabitans Hlj1p XP_018735417.1 3843047 R 796027 CDS AWJ20_1219 30032997 3846874..3849612 A 1 NC_031672.1 Catalytic subunit of DNA polymerase delta; required for chromosomal DNA replication during mitosis and meiosis, intragenic recombination, repair of double strand DNA breaks, and DNA replication during nucleotide excision repair (NER); GO_component: GO:0043625 - delta DNA polymerase complex [Evidence IBA]; GO_component: GO:0043625 - delta DNA polymerase complex [Evidence TAS] [PMID 9745046]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005657 - replication fork [Evidence IDA] [PMID 15773893]; GO_function: GO:0008296 - 3'-5'-exodeoxyribonuclease activity [Evidence IBA]; GO_function: GO:0008296 - 3'-5'-exodeoxyribonuclease activity [Evidence IMP] [PMID 1648480]; GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA,IEA,IEA]; GO_function: GO:0003887 - DNA-directed DNA polymerase activity [Evidence IDA,IMP] [PMID 1678279]; GO_function: GO:0003887 - DNA-directed DNA polymerase activity [Evidence IDA] [PMID 18635534]; GO_function: GO:0004527 - exonuclease activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0051536 - iron-sulfur cluster binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004518 - nuclease activity [Evidence IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016779 - nucleotidyltransferase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006260 - DNA replication [Evidence IEA,IEA]; GO_process: GO:0006260 - DNA replication [Evidence IMP] [PMID 1678279]; GO_process: GO:0045004 - DNA replication proofreading [Evidence IBA]; GO_process: GO:0043137 - DNA replication, removal of RNA primer [Evidence IDA] [PMID 16837458]; GO_process: GO:0006278 - RNA-dependent DNA replication [Evidence IDA] [PMID 17429354]; GO_process: GO:0006287 - base-excision repair, gap-filling [Evidence IBA]; GO_process: GO:0045005 - maintenance of fidelity involved in DNA-dependent DNA replication [Evidence IGI] [PMID 15601866]; GO_process: GO:0090305 - nucleic acid phosphodiester bond hydrolysis [Evidence IEA]; GO_process: GO:0006139 - nucleobase-containing compound metabolic process [Evidence IEA]; GO_process: GO:0006297 - nucleotide-excision repair, DNA gap filling [Evidence IBA]; GO_process: GO:0007346 - regulation of mitotic cell cycle [Evidence IBA]; DNA-directed DNA polymerase delta POL3 3849612 POL3 30032997 POL3 Sugiyamaella lignohabitans DNA-directed DNA polymerase delta POL3 XP_018735418.1 3846874 D 796027 CDS AWJ20_1220 30032999 complement(3849789..3852896) A 1 NC_031672.1 histone deacetylase HDA1 3852896 HDA1 30032999 HDA1 Sugiyamaella lignohabitans histone deacetylase HDA1 XP_018735419.1 3849789 R 796027 CDS AWJ20_1221 30033000 3854888..3855181 A 1 NC_031672.1 uncharacterized protein 3855181 30033000 AWJ20_1221 Sugiyamaella lignohabitans uncharacterized protein XP_018735420.1 3854888 D 796027 CDS AWJ20_1222 30033001 3858054..3860120 A 1 NC_031672.1 Component of the GARP (Golgi-associated retrograde protein) complex; GARP is required for the recycling of proteins from endosomes to the late Golgi, and for mitosis after DNA damage induced checkpoint arrest; involved in localization of actin and chitin; members of the GARP complex are Vps51p-Vps52p-Vps53p-Vps54p; GO_component: GO:0000938 - GARP complex [Evidence IPI] [PMID 10637310]; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA,IEA]; GO_component: GO:0005794 - Golgi apparatus [Evidence IDA] [PMID 10637310]; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA,IEA]; GO_component: GO:0005768 - endosome [Evidence IEA]; GO_component: GO:0010008 - endosome membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0005515 - protein binding [Evidence IPI] [PMID 12377769]; GO_process: GO:0006896 - Golgi to vacuole transport [Evidence IMP] [PMID 10637310]; GO_process: GO:0030029 - actin filament-based process [Evidence IGI] [PMID 9153752]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0042147 - retrograde transport, endosome to Golgi [Evidence IDA] [PMID 12686613]; GO_process: GO:0006810 - transport [Evidence IEA]; Vps52p 3860120 VPS52 30033001 VPS52 Sugiyamaella lignohabitans Vps52p XP_018735421.1 3858054 D 796027 CDS AWJ20_1223 30033002 3860658..3861548 A 1 NC_031672.1 uncharacterized protein 3861548 30033002 AWJ20_1223 Sugiyamaella lignohabitans uncharacterized protein XP_018735422.1 3860658 D 796027 CDS AWJ20_1224 30033003 complement(3861623..3861919) A 1 NC_031672.1 Cell division control protein 14 3861919 30033003 AWJ20_1224 Sugiyamaella lignohabitans Cell division control protein 14 XP_018735423.1 3861623 R 796027 CDS AWJ20_1225 30033004 3862934..3864922 A 1 NC_031672.1 Outer mitochondrial membrane GTPase, subunit of the ERMES complex; potential regulatory subunit of the ERMES complex that links the ER to mitochondria and may promote inter-organellar calcium and phospholipid exchange as well as coordinating mitochondrial DNA replication and growth; cells lacking Gem1p contain collapsed, globular, or grape-like mitochondria; ortholog of metazoan Miro GTPases; GO_component: GO:0032865 - ERMES complex [Evidence IPI] [PMID 21825164]; GO_component: GO:0032865 - ERMES complex [Evidence IPI] [PMID 21945531]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IEA,IEA,IEA]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IDA] [PMID 15479738]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IDA] [PMID 16407407]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0005525 - GTP binding [Evidence IEA,IEA]; GO_function: GO:0003924 - GTPase activity [Evidence IEA]; GO_function: GO:0003924 - GTPase activity [Evidence IDA] [PMID 15479738]; GO_function: GO:0005509 - calcium ion binding [Evidence IEA]; GO_function: GO:0005509 - calcium ion binding [Evidence IDA] [PMID 21036903]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006184 - GTP catabolic process [Evidence IEA]; GO_process: GO:0019725 - cellular homeostasis [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0000001 - mitochondrion inheritance [Evidence IGI,IMP] [PMID 18245340]; GO_process: GO:0055091 - phospholipid homeostasis [Evidence IGI] [PMID 21825164]; GO_process: GO:0010821 - regulation of mitochondrion organization [Evidence IMP] [PMID 21825164]; GO_process: GO:0007264 - small GTPase mediated signal transduction [Evidence IEA]; ERMES complex Ca(2+)-binding regulatory GTPase GEM1 3864922 GEM1 30033004 GEM1 Sugiyamaella lignohabitans ERMES complex Ca(2+)-binding regulatory GTPase GEM1 XP_018735424.1 3862934 D 796027 CDS AWJ20_1226 30033005 complement(3865185..3869252) A 1 NC_031672.1 Protein with a role in regulating Swe1p-dependent polarized growth; involved in maintaining Cdc55p in the cytoplasm where it promotes mitotic entry; involved in mitotic exit through Cdc14p regulation; interacts with silencing proteins at telomeres; has a role in Bcy1p localization; implicated in mRNA nuclear export; ZDS1 has a paralog, ZDS2, that arose from the whole genome duplication; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 21536748]; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 8816439]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IPI] [PMID 11134339]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 21536748]; GO_component: GO:0000131 - incipient cellular bud site [Evidence IDA] [PMID 8816439]; GO_function: GO:0008601 - protein phosphatase type 2A regulator activity [Evidence IGI,IMP] [PMID 18762578]; GO_process: GO:0007569 - cell aging [Evidence IMP] [PMID 10662670]; GO_process: GO:0006342 - chromatin silencing [Evidence IMP] [PMID 10662670]; GO_process: GO:0000078 - cytokinesis after mitosis checkpoint [Evidence IGI] [PMID 20980617]; GO_process: GO:0030010 - establishment of cell polarity [Evidence IGI,IMP] [PMID 8816439]; GO_process: GO:0006406 - mRNA export from nucleus [Evidence IGI,IMP,IPI] [PMID 15619606]; GO_process: GO:0051028 - mRNA transport [Evidence IEA]; GO_process: GO:0010971 - positive regulation of G2/M transition of mitotic cell cycle [Evidence IMP] [PMID 21536748]; GO_process: GO:0032880 - regulation of protein localization [Evidence IMP] [PMID 18762578]; GO_process: GO:0006810 - transport [Evidence IEA]; Zds1p 3869252 ZDS1 30033005 ZDS1 Sugiyamaella lignohabitans Zds1p XP_018735425.1 3865185 R 796027 CDS AWJ20_1227 30033006 complement(3870703..3871764) A 1 NC_031672.1 tRNA methyltransferase; methylates the N-1 position of guanine at position 9 in tRNAs; protein abundance increases in response to DNA replication stress; member of the SPOUT (SpoU-TrmD) methyltransferase family; human ortholog TRMT10A plays a role in the pathogenesis of microcephaly and early onset diabetes; an 18-mer originates from the TRM10 locus; genetic analysis shows the 18-mer is the translation regulator; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0008168 - methyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0052905 - tRNA (guanine(9)-N(1))-methyltransferase activity [Evidence IEA]; GO_function: GO:0016423 - tRNA (guanine) methyltransferase activity [Evidence IDA] [PMID 12702816]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0032259 - methylation [Evidence IEA]; GO_process: GO:0030488 - tRNA methylation [Evidence IDA] [PMID 12702816]; GO_process: GO:0008033 - tRNA processing [Evidence IEA]; Trm10p 3871764 TRM10 30033006 TRM10 Sugiyamaella lignohabitans Trm10p XP_018735426.1 3870703 R 796027 CDS AWJ20_1228 30033007 3873260..3874612 A 1 NC_031672.1 Low-affinity amino acid permease; may act to supply the cell with amino acids as nitrogen source in nitrogen-poor conditions; transcription is induced under conditions of sulfur limitation; plays a role in regulating Ty1 transposition; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence ISS] [PMID 10654085]; GO_function: GO:0015171 - amino acid transmembrane transporter activity [Evidence IEA]; GO_function: GO:0015171 - amino acid transmembrane transporter activity [Evidence IDA] [PMID 10654085]; GO_function: GO:0015171 - amino acid transmembrane transporter activity [Evidence IMP] [PMID 14697254]; GO_process: GO:0003333 - amino acid transmembrane transport [Evidence IEA]; GO_process: GO:0006865 - amino acid transport [Evidence IEA,IEA]; GO_process: GO:0006865 - amino acid transport [Evidence IDA] [PMID 10654085]; GO_process: GO:0006865 - amino acid transport [Evidence IMP] [PMID 14697254]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IDA] [PMID 10654085]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; Agp3p 3874612 AGP3 30033007 AGP3 Sugiyamaella lignohabitans Agp3p XP_018735427.1 3873260 D 796027 CDS AWJ20_1229 30033008 3875447..3876175 A 1 NC_031672.1 Nuclear thiol peroxidase; functions as an alkyl-hydroperoxide reductase during post-diauxic growth; GO_component: GO:0005694 - chromosome [Evidence IEA]; GO_component: GO:0000781 - chromosome, telomeric region [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 10681558]; GO_component: GO:0005634 - nucleus [Evidence IDA,ISS] [PMID 2408019]; GO_function: GO:0016209 - antioxidant activity [Evidence IEA,IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0004601 - peroxidase activity [Evidence IEA]; GO_function: GO:0051920 - peroxiredoxin activity [Evidence IEA]; GO_function: GO:0008379 - thioredoxin peroxidase activity [Evidence IDA,IMP,ISS] [PMID 10681558]; GO_process: GO:0045454 - cell redox homeostasis [Evidence IDA,IMP] [PMID 10681558]; GO_process: GO:0034599 - cellular response to oxidative stress [Evidence IGI] [PMID 15051715]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Dot5p 3876175 DOT5 30033008 DOT5 Sugiyamaella lignohabitans Dot5p XP_018735428.1 3875447 D 796027 CDS AWJ20_1230 30033010 3877828..3878376 A 1 NC_031672.1 Proteasome-interacting protein; involved in the assembly of the base subcomplex of the 19S proteasomal regulatory particle (RP); similar to mammalian proteasomal modulator subunit; non-essential gene; interacts with Rpn4p; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11489916]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 19446323]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 19446323]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0070682 - proteasome regulatory particle assembly [Evidence IDA,IGI,IMP] [PMID 19446322]; GO_process: GO:0070682 - proteasome regulatory particle assembly [Evidence IGI,IMP] [PMID 19446323]; GO_process: GO:0006511 - ubiquitin-dependent protein catabolic process [Evidence ISS] [PMID 10419517]; Nas2p 3878376 NAS2 30033010 NAS2 Sugiyamaella lignohabitans Nas2p XP_018735429.1 3877828 D 796027 CDS AWJ20_1231 30033011 3880469..3883471 A 1 NC_031672.1 Zinc cluster protein proposed to be a transcriptional regulator; regulator involved in the stress response; null mutants have a respiratory deficiency, calcofluor white sensitivity and slightly increased cycloheximide resistance; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19111667]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19158363]; GO_function: GO:0000981 - sequence-specific DNA binding RNA polymerase II transcription factor activity [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence IEA]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA,IEA]; GO_process: GO:0006950 - response to stress [Evidence IEA]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA,IEA]; Asg1p 3883471 ASG1 30033011 ASG1 Sugiyamaella lignohabitans Asg1p XP_018735430.1 3880469 D 796027 CDS AWJ20_1232 30033012 3884362..3886197 A 1 NC_031672.1 Core component of the signal recognition particle (SRP) complex; SRP complex functions in targeting nascent secretory proteins to the endoplasmic reticulum (ER) membrane; relocalizes from cytoplasm to the nuclear periphery upon DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0034399 - nuclear periphery [Evidence IDA] [PMID 22842922]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005786 - signal recognition particle, endoplasmic reticulum targeting [Evidence IEA]; GO_component: GO:0005786 - signal recognition particle, endoplasmic reticulum targeting [Evidence IDA] [PMID 7925282]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0005048 - signal sequence binding [Evidence IPI] [PMID 7925282]; GO_process: GO:0006617 - SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition [Evidence IC] [PMID 7925282]; GO_process: GO:0045047 - protein targeting to ER [Evidence IPI] [PMID 7925282]; Srp68p 3886197 SRP68 30033012 SRP68 Sugiyamaella lignohabitans Srp68p XP_018735431.1 3884362 D 796027 CDS AWJ20_1233 30033013 3886845..3887246 A 1 NC_031672.1 3'-5' RNA exonuclease; involved in 3'-end processing of U4 and U5 snRNAs, 5S and 5.8S rRNAs, and RNase P and RNase MRP RNA; localized to mitochondria and null suppresses escape of mtDNA to nucleus in yme1 yme2 mutants; RNase D exonuclease; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IDA,IMP] [PMID 9933355]; GO_function: GO:0008408 - 3'-5' exonuclease activity [Evidence ISS] [PMID 9396823]; GO_function: GO:0000175 - 3'-5'-exoribonuclease activity [Evidence IMP] [PMID 10716935]; GO_function: GO:0004527 - exonuclease activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0004518 - nuclease activity [Evidence IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_process: GO:0034475 - U4 snRNA 3'-end processing [Evidence IGI,IMP] [PMID 10716935]; GO_process: GO:0034476 - U5 snRNA 3'-end processing [Evidence IGI] [PMID 10716935]; GO_process: GO:0000467 - exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IGI] [PMID 10716935]; GO_process: GO:0000002 - mitochondrial genome maintenance [Evidence IGI,IMP] [PMID 9933355]; Rex2p 3887246 REX2 30033013 REX2 Sugiyamaella lignohabitans Rex2p XP_018735432.1 3886845 D 796027 CDS AWJ20_1234 30033014 complement(3887348..3888355) A 1 NC_031672.1 uncharacterized protein 3888355 30033014 AWJ20_1234 Sugiyamaella lignohabitans uncharacterized protein XP_018735433.1 3887348 R 796027 CDS AWJ20_1235 30033015 complement(3888755..3889957) A 1 NC_031672.1 Integral peroxisomal membrane protein; required for translocation of peroxisomal matrix proteins; interacts with the PTS1 signal recognition factor Pex5p and the PTS2 signal recognition factor Pex7p; forms a complex with Pex14p and Pex17p; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005778 - peroxisomal membrane [Evidence IEA]; GO_component: GO:0005778 - peroxisomal membrane [Evidence IDA] [PMID 8858166]; GO_component: GO:0005778 - peroxisomal membrane [Evidence IDA] [PMID 8858167]; GO_component: GO:0005777 - peroxisome [Evidence IEA,IEA]; GO_function: GO:0030674 - protein binding, bridging [Evidence IPI] [PMID 10087260]; GO_function: GO:0030674 - protein binding, bridging [Evidence IPI] [PMID 12595255]; GO_process: GO:0016560 - protein import into peroxisome matrix, docking [Evidence IEA]; GO_process: GO:0016560 - protein import into peroxisome matrix, docking [Evidence IGI,IPI] [PMID 10087260]; GO_process: GO:0016560 - protein import into peroxisome matrix, docking [Evidence IPI] [PMID 12595255]; GO_process: GO:0016560 - protein import into peroxisome matrix, docking [Evidence IPI] [PMID 15798189]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Pex13p 3889957 PEX13 30033015 PEX13 Sugiyamaella lignohabitans Pex13p XP_018735434.1 3888755 R 796027 CDS AWJ20_1236 30033016 3891121..3892008 A 1 NC_031672.1 uncharacterized protein 3892008 30033016 AWJ20_1236 Sugiyamaella lignohabitans uncharacterized protein XP_018735435.1 3891121 D 796027 CDS AWJ20_1237 30033017 3893135..3896302 A 1 NC_031672.1 Phospholipase C; hydrolyzes phosphatidylinositol 4,5-biphosphate (PIP2) to generate the signaling molecules inositol 1,4,5-triphosphate (IP3) and 1,2-diacylglycerol (DAG); involved in regulating many cellular processes; Plc1p and inositol polyphosphates are required for acetyl-CoA homeostasis which regulates global histone acetylation; GO_component: GO:0000775 - chromosome, centromeric region [Evidence IDA] [PMID 10779349]; GO_component: GO:0000775 - chromosome, centromeric region [Evidence IDA] [PMID 12756538]; GO_component: GO:0000778 - condensed nuclear chromosome kinetochore [Evidence IPI] [PMID 10779349]; GO_function: GO:0005509 - calcium ion binding [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004435 - phosphatidylinositol phospholipase C activity [Evidence IEA,IEA]; GO_function: GO:0004435 - phosphatidylinositol phospholipase C activity [Evidence IDA] [PMID 15485855]; GO_function: GO:0004435 - phosphatidylinositol phospholipase C activity [Evidence IMP] [PMID 7753023]; GO_function: GO:0004435 - phosphatidylinositol phospholipase C activity [Evidence IDA] [PMID 8395015]; GO_function: GO:0004435 - phosphatidylinositol phospholipase C activity [Evidence IMP] [PMID 9784626]; GO_function: GO:0008081 - phosphoric diester hydrolase activity [Evidence IEA]; GO_function: GO:0004871 - signal transducer activity [Evidence IEA]; GO_process: GO:0032958 - inositol phosphate biosynthetic process [Evidence IMP] [PMID 10390371]; GO_process: GO:0035556 - intracellular signal transduction [Evidence IEA]; GO_process: GO:0016042 - lipid catabolic process [Evidence IEA]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA,IEA]; GO_process: GO:0009395 - phospholipid catabolic process [Evidence IMP] [PMID 7753023]; GO_process: GO:0009395 - phospholipid catabolic process [Evidence IDA] [PMID 8395015]; GO_process: GO:0034501 - protein localization to kinetochore [Evidence IMP] [PMID 19205744]; GO_process: GO:0007165 - signal transduction [Evidence IEA,IEA]; GO_process: GO:0001402 - signal transduction involved in filamentous growth [Evidence IGI,IPI] [PMID 10514491]; phosphatidylinositol phospholipase C 3896302 PLC1 30033017 PLC1 Sugiyamaella lignohabitans phosphatidylinositol phospholipase C XP_018735436.1 3893135 D 796027 CDS AWJ20_1238 30033018 complement(3896440..3897792) A 1 NC_031672.1 Protein associated with U3 and U14 snoRNAs; required for pre-rRNA processing and 40S ribosomal subunit synthesis; localized in the nucleus and concentrated in the nucleolus; GO_component: GO:0030686 - 90S preribosome [Evidence IDA] [PMID 12150911]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 12150911]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 12150911]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9034325]; GO_component: GO:0030688 - preribosome, small subunit precursor [Evidence IDA] [PMID 16738661]; GO_function: GO:0030515 - snoRNA binding [Evidence IDA] [PMID 12527778]; GO_process: GO:0000447 - endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 15590835]; GO_process: GO:0006364 - rRNA processing [Evidence IMP,IPI] [PMID 12527778]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; Enp1p 3897792 ENP1 30033018 ENP1 Sugiyamaella lignohabitans Enp1p XP_018735437.1 3896440 R 796027 CDS AWJ20_1239 30033019 3898300..3899823 A 1 NC_031672.1 Nucleotide exchange factor for Gsp1p; localizes to the nucleus, required for nucleocytoplasmic trafficking of macromolecules; suppressor of the pheromone response pathway; potentially phosphorylated by Cdc28p; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0000790 - nuclear chromatin [Evidence IDA] [PMID 16365162]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 1666302]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 1865879]; GO_function: GO:0005087 - Ran guanyl-nucleotide exchange factor activity [Evidence IGI] [PMID 1865879]; GO_function: GO:0005085 - guanyl-nucleotide exchange factor activity [Evidence IEA]; GO_function: GO:0004871 - signal transducer activity [Evidence IMP] [PMID 2548085]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0007067 - mitotic nuclear division [Evidence IEA]; GO_process: GO:0006407 - rRNA export from nucleus [Evidence IMP] [PMID 11739405]; GO_process: GO:0043087 - regulation of GTPase activity [Evidence IEA]; GO_process: GO:0019236 - response to pheromone [Evidence IEA]; GO_process: GO:0000054 - ribosomal subunit export from nucleus [Evidence IMP] [PMID 11739405]; GO_process: GO:0006810 - transport [Evidence IEA]; Srm1p 3899823 SRM1 30033019 SRM1 Sugiyamaella lignohabitans Srm1p XP_018735438.1 3898300 D 796027 CDS AWJ20_1240 30033021 complement(3900071..3901687) A 1 NC_031672.1 Type I transmembrane sorting receptor for multiple vacuolar hydrolases; cycles between the late-Golgi and prevacuolar endosome-like compartments; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA,IEA]; GO_component: GO:0005794 - Golgi apparatus [Evidence IDA] [PMID 20936498]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0031902 - late endosome membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0005048 - signal sequence binding [Evidence IMP,IPI] [PMID 8187177]; GO_process: GO:0006623 - protein targeting to vacuole [Evidence IMP,IPI] [PMID 8187177]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0007034 - vacuolar transport [Evidence IMP,IPI] [PMID 8187177]; Pep1p 3901687 PEP1 30033021 PEP1 Sugiyamaella lignohabitans Pep1p XP_018735439.1 3900071 R 796027 CDS AWJ20_1241 30033022 complement(3901870..3904608) A 1 NC_031672.1 Putative membrane glycoprotein; has strong similarity to Vth1p and Pep1p/Vps10p; may be involved in vacuolar protein sorting; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0005048 - signal sequence binding [Evidence IGI,ISA] [PMID 8636229]; GO_process: GO:0006896 - Golgi to vacuole transport [Evidence IGI] [PMID 8662642]; GO_process: GO:0006623 - protein targeting to vacuole [Evidence IGI] [PMID 8636229]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Vth2p 3904608 VTH2 30033022 VTH2 Sugiyamaella lignohabitans Vth2p XP_018735440.1 3901870 R 796027 CDS AWJ20_1242 30033023 3905169..3906482 A 1 NC_031672.1 Splicing factor required for the first step of pre-mRNA splicing; binding to the spliceosome requires Prp2p and Yju2p; heat-stable protein; has similarity to S. pombe Cwf25p; GO_component: GO:0005684 - U2-type spliceosomal complex [Evidence IDA] [PMID 11884590]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005681 - spliceosomal complex [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008380 - RNA splicing [Evidence IEA]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0000398 - mRNA splicing, via spliceosome [Evidence IPI] [PMID 14690591]; GO_process: GO:0000398 - mRNA splicing, via spliceosome [Evidence IDA] [PMID 19935684]; Cwc25p 3906482 CWC25 30033023 CWC25 Sugiyamaella lignohabitans Cwc25p XP_018735441.1 3905169 D 796027 CDS AWJ20_1243 30033024 complement(3906646..3906897) A 1 NC_031672.1 uncharacterized protein 3906897 30033024 AWJ20_1243 Sugiyamaella lignohabitans uncharacterized protein XP_018735442.1 3906646 R 796027 CDS AWJ20_1244 30033025 3907654..3909381 A 1 NC_031672.1 uncharacterized protein 3909381 30033025 AWJ20_1244 Sugiyamaella lignohabitans uncharacterized protein XP_018735443.1 3907654 D 796027 CDS AWJ20_1245 30033026 complement(3909581..3910078) A 1 NC_031672.1 Protein involved in nucleolar integrity and processing of pre-rRNA; has a role in processing rRNA for the 60S ribosome subunit; transcript is induced in response to cytotoxic stress but not genotoxic stress; relocalizes from nucleus to nucleolus upon DNA replication stress; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 11116400]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 17443350]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0006364 - rRNA processing [Evidence IDA] [PMID 11932453]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IMP] [PMID 11116400]; Cgr1p 3910078 CGR1 30033026 CGR1 Sugiyamaella lignohabitans Cgr1p XP_018735444.1 3909581 R 796027 CDS AWJ20_1246 30033027 3910730..3912565 A 1 NC_031672.1 top hit is XP_002974472.1 originated in Selaginella moellendorffii; C6 transcription factor 3912565 30033027 AWJ20_1246 Sugiyamaella lignohabitans C6 transcription factor XP_018735445.1 3910730 D 796027 CDS AWJ20_1247 30033028 complement(3913807..3915870) A 1 NC_031672.1 alkaline-responsive transcriptional regulator RIM101 3915870 RIM101 30033028 RIM101 Sugiyamaella lignohabitans alkaline-responsive transcriptional regulator RIM101 XP_018735446.1 3913807 R 796027 CDS AWJ20_1248 30033029 complement(3918381..3919457) A 1 NC_031672.1 Translational elongation factor EF-1 alpha; also encoded by TEF1; functions in the binding reaction of aminoacyl-tRNA (AA-tRNA) to ribosomes; TEF2-RFP levels increase during replicative aging; may also have a role in tRNA re-export from the nucleus; TEF2 has a paralog, TEF1, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 20032305]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA,IEA]; GO_component: GO:0005853 - eukaryotic translation elongation factor 1 complex [Evidence ISS] [PMID 3026912]; GO_function: GO:0019003 - GDP binding [Evidence IDA] [PMID 17925388]; GO_function: GO:0005525 - GTP binding [Evidence IEA,IEA]; GO_function: GO:0005525 - GTP binding [Evidence IDA] [PMID 17925388]; GO_function: GO:0003924 - GTPase activity [Evidence IEA]; GO_function: GO:0003779 - actin binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0003746 - translation elongation factor activity [Evidence IEA,IEA]; GO_function: GO:0003746 - translation elongation factor activity [Evidence IMP] [PMID 10514524]; GO_process: GO:0006184 - GTP catabolic process [Evidence IEA]; GO_process: GO:0006409 - tRNA export from nucleus [Evidence IGI,IMP] [PMID 10766739]; GO_process: GO:0006409 - tRNA export from nucleus [Evidence IGI,IMP] [PMID 17203074]; GO_process: GO:0006412 - translation [Evidence IEA]; GO_process: GO:0006414 - translational elongation [Evidence IEA,IEA,IEA]; GO_process: GO:0006414 - translational elongation [Evidence IMP] [PMID 10514524]; translation elongation factor EF-1 alpha 3919457 TEF1 30033029 TEF1 Sugiyamaella lignohabitans translation elongation factor EF-1 alpha XP_018735447.1 3918381 R 796027 CDS AWJ20_1249 30033030 complement(join(3924513..3926960,3927019..3927276)) A 1 NC_031672.1 Zinc cluster protein proposed to be a transcriptional regulator; regulator involved in the stress response; null mutants have a respiratory deficiency, calcofluor white sensitivity and slightly increased cycloheximide resistance; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19111667]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19158363]; GO_function: GO:0000981 - sequence-specific DNA binding RNA polymerase II transcription factor activity [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence IEA]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA,IEA]; GO_process: GO:0006950 - response to stress [Evidence IEA]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA,IEA]; Asg1p 3927276 ASG1 30033030 ASG1 Sugiyamaella lignohabitans Asg1p XP_018735448.1 3924513 R 796027 CDS AWJ20_1250 30033032 3930628..3933252 A 1 NC_031672.1 forkhead family transcription factor FKH2 3933252 FKH2 30033032 FKH2 Sugiyamaella lignohabitans forkhead family transcription factor FKH2 XP_018735449.1 3930628 D 796027 CDS AWJ20_1251 30033033 complement(3933672..3934385) A 1 NC_031672.1 uncharacterized protein 3934385 30033033 AWJ20_1251 Sugiyamaella lignohabitans uncharacterized protein XP_018735450.1 3933672 R 796027 CDS AWJ20_1252 30033034 3936952..3937293 A 1 NC_031672.1 Ribosomal 60S subunit protein L16A; N-terminally acetylated, binds 5.8 S rRNA; transcriptionally regulated by Rap1p; homologous to mammalian ribosomal protein L13A and bacterial L13; RPL16A has a paralog, RPL16B, that arose from the whole genome duplication; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0022625 - cytosolic large ribosomal subunit [Evidence IDA] [PMID 11983894]; GO_component: GO:0015934 - large ribosomal subunit [Evidence IEA]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA,IEA]; GO_function: GO:0003723 - RNA binding [Evidence IDA] [PMID 6337137]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IC] [PMID 11983894]; GO_process: GO:0002181 - cytoplasmic translation [Evidence IC] [PMID 11983894]; GO_process: GO:0006412 - translation [Evidence IEA]; ribosomal 60S subunit protein L16A 3937293 RPL16A 30033034 RPL16A Sugiyamaella lignohabitans ribosomal 60S subunit protein L16A XP_018735451.1 3936952 D 796027 CDS AWJ20_1253 30033035 complement(3937661..3938722) A 1 NC_031672.1 NADPH-dependent quinone reductase; GFP-tagged protein localizes to the cytoplasm and nucleus; has similarity to E. coli quinone oxidoreductase and to human zeta-crystallin; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0032440 - 2-alkenal reductase [NAD(P)] activity [Evidence IDA] [PMID 21276778]; GO_function: GO:0017091 - AU-rich element binding [Evidence IDA] [PMID 17497241]; GO_function: GO:0017091 - AU-rich element binding [Evidence IDA] [PMID 19007762]; GO_function: GO:0003960 - NADPH:quinone reductase activity [Evidence IEA]; GO_function: GO:0003960 - NADPH:quinone reductase activity [Evidence IDA] [PMID 17497241]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0034599 - cellular response to oxidative stress [Evidence IMP] [PMID 17497241]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; Zta1p 3938722 ZTA1 30033035 ZTA1 Sugiyamaella lignohabitans Zta1p XP_018735452.1 3937661 R 796027 CDS AWJ20_1254 30033036 3943087..3945075 A 1 NC_031672.1 Ribosomal RNA processing element (RRPE)-binding protein; involved in the glucose-induced transition from quiescence to growth; restricted to nucleus in quiescent cells, released into cytoplasm after glucose repletion; binds Sin3p; relative distribution to the nucleus increases upon DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 20385783]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 17616518]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 20385783]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA,IMP] [PMID 17616518]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19158363]; GO_process: GO:0000432 - positive regulation of transcription from RNA polymerase II promoter by glucose [Evidence IMP] [PMID 17616518]; Stb3p 3945075 STB3 30033036 STB3 Sugiyamaella lignohabitans Stb3p XP_018735453.1 3943087 D 796027 CDS AWJ20_1255 30033037 complement(join(3945569..3946417,3946673..3946693)) A 1 NC_031672.1 Protein required for optimal translation under nutrient stress; perturbs association of Yef3p with ribosomes; involved in TOR signaling; binds G4 quadruplex and purine motif triplex nucleic acid; helps maintain telomere structure; protein abundance increases in response to DNA replication stress; serves as a ribosome preservation factor both during quiescence and recovery; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 15044472]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0048471 - perinuclear region of cytoplasm [Evidence IEA]; GO_component: GO:0005844 - polysome [Evidence IDA] [PMID 15044472]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0003677 - DNA binding [Evidence IDA] [PMID 15654430]; GO_function: GO:0043022 - ribosome binding [Evidence IDA] [PMID 15044472]; GO_function: GO:0042162 - telomeric DNA binding [Evidence IDA] [PMID 15044472]; GO_function: GO:0045142 - triplex DNA binding [Evidence IDA] [PMID 18029617]; GO_process: GO:0031929 - TOR signaling [Evidence IMP] [PMID 16580682]; GO_process: GO:0043066 - negative regulation of apoptotic process [Evidence IDA] [PMID 11514626]; GO_process: GO:0043558 - regulation of translational initiation in response to stress [Evidence IMP] [PMID 16580682]; GO_process: GO:0000723 - telomere maintenance [Evidence IGI] [PMID 12207228]; GO_process: GO:0006414 - translational elongation [Evidence IGI,IMP] [PMID 19666721]; Stm1p 3946693 STM1 30033037 STM1 Sugiyamaella lignohabitans Stm1p XP_018735454.1 3945569 R 796027 CDS AWJ20_1256 30033038 3948715..3950526 A 1 NC_031672.1 Oxalyl-CoA synthetase; capable of catalyzing conversion of oxalate to oxalyl-CoA; catalyzes first step in pathway of oxalate degradation that functions to protect yeast from inhibitory effects of oxalate; peroxisomal protein that binds mRNA; localizes to both peroxisomal peripheral membrane and matrix, expression is highly inducible by oleic acid; similar to E. coli long chain acyl-CoA synthetase; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005782 - peroxisomal matrix [Evidence IEA]; GO_component: GO:0005782 - peroxisomal matrix [Evidence IDA] [PMID 8841414]; GO_component: GO:0005778 - peroxisomal membrane [Evidence IEA]; GO_component: GO:0005778 - peroxisomal membrane [Evidence IDA] [PMID 8841414]; GO_component: GO:0005777 - peroxisome [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 20844764]; GO_function: GO:0050203 - oxalate-CoA ligase activity [Evidence IDA,IMP] [PMID 24291261]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0033611 - oxalate catabolic process [Evidence IDA,IMP] [PMID 24291261]; Pcs60p 3950526 PCS60 30033038 PCS60 Sugiyamaella lignohabitans Pcs60p XP_018735455.1 3948715 D 796027 CDS AWJ20_1257 30033039 complement(3950723..3951658) A 1 NC_031672.1 Mitochondrial ribosomal protein of the small subunit; MRP51 exhibits genetic interactions with mutations in the COX2 and COX3 mRNA 5'-untranslated leader sequences; GO_component: GO:0005763 - mitochondrial small ribosomal subunit [Evidence IPI] [PMID 11278769]; GO_component: GO:0005763 - mitochondrial small ribosomal subunit [Evidence IDA] [PMID 9528754]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IPI] [PMID 11278769]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IDA] [PMID 9528754]; GO_process: GO:0032543 - mitochondrial translation [Evidence IC] [PMID 11278769]; GO_process: GO:0032543 - mitochondrial translation [Evidence IMP] [PMID 9528754]; GO_process: GO:0070124 - mitochondrial translational initiation [Evidence IGI] [PMID 9528754]; mitochondrial 37S ribosomal protein MRP51 3951658 MRP51 30033039 MRP51 Sugiyamaella lignohabitans mitochondrial 37S ribosomal protein MRP51 XP_018735456.1 3950723 R 796027 CDS AWJ20_1258 30033040 complement(3952083..3955532) A 1 NC_031672.1 Second-largest subunit of RNA polymerase III; RNA polymerase III is responsible for the transcription of tRNA and 5S RNA genes, and other low molecular weight RNAs; GO_component: GO:0005666 - DNA-directed RNA polymerase III complex [Evidence IDA] [PMID 10611227]; GO_component: GO:0005666 - DNA-directed RNA polymerase III complex [Evidence IDA] [PMID 3905793]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0003899 - DNA-directed RNA polymerase activity [Evidence IEA,IEA,IEA]; GO_function: GO:0001056 - RNA polymerase III activity [Evidence IDA] [PMID 3905793]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016779 - nucleotidyltransferase activity [Evidence IEA]; GO_function: GO:0032549 - ribonucleoside binding [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0042797 - tRNA transcription from RNA polymerase III promoter [Evidence IGI] [PMID 2199311]; GO_process: GO:0042797 - tRNA transcription from RNA polymerase III promoter [Evidence IDA] [PMID 3905793]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; DNA-directed RNA polymerase III core subunit RET1 3955532 RET1 30033040 RET1 Sugiyamaella lignohabitans DNA-directed RNA polymerase III core subunit RET1 XP_018735457.1 3952083 R 796027 CDS AWJ20_1259 30033041 3956847..3959366 A 1 NC_031672.1 Putative integral membrane E3 ubiquitin ligase; acts with Asi2p and Asi3p to ensure the fidelity of SPS-sensor signalling by maintaining the dormant repressed state of gene expression in the absence of inducing signals; ASI1 has a paralog, ASI3, that arose from the whole genome duplication; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IGI,ISS] [PMID 11454748]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005637 - nuclear inner membrane [Evidence IEA]; GO_component: GO:0005637 - nuclear inner membrane [Evidence IDA] [PMID 16735580]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence IGI,ISS] [PMID 11454748]; GO_process: GO:0006511 - ubiquitin-dependent protein catabolic process [Evidence IGI] [PMID 11454748]; putative ubiquitin-protein ligase ASI1 3959366 ASI1 30033041 ASI1 Sugiyamaella lignohabitans putative ubiquitin-protein ligase ASI1 XP_018735458.1 3956847 D 796027 CDS AWJ20_1260 30033043 3960119..3961741 A 1 NC_031672.1 uncharacterized protein 3961741 30033043 AWJ20_1260 Sugiyamaella lignohabitans uncharacterized protein XP_018735459.1 3960119 D 796027 CDS AWJ20_1261 30033044 3962490..3963839 A 1 NC_031672.1 N-formyltyrosine oxidase; sporulation-specific microsomal enzyme involved in the production of N,N-bisformyl dityrosine required for spore wall maturation, homologous to cytochrome P-450s; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0020037 - heme binding [Evidence IEA]; GO_function: GO:0005506 - iron ion binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004497 - monooxygenase activity [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence ISS] [PMID 8183942]; GO_function: GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [Evidence IEA]; GO_process: GO:0030476 - ascospore wall assembly [Evidence IDA,IMP] [PMID 8183942]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0030435 - sporulation resulting in formation of a cellular spore [Evidence IEA]; Dit2p 3963839 DIT2 30033044 DIT2 Sugiyamaella lignohabitans Dit2p XP_018735460.1 3962490 D 796027 CDS AWJ20_1262 30033045 complement(3963894..3966350) A 1 NC_031672.1 Subunit of both RNase MRP and nuclear RNase P; RNase MRP cleaves pre-rRNA, while nuclear RNase P cleaves tRNA precursors to generate mature 5' ends and facilitates turnover of nuclear RNAs; binds to the RPR1 RNA subunit in RNase P; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005655 - nucleolar ribonuclease P complex [Evidence IDA] [PMID 9620854]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0000172 - ribonuclease MRP complex [Evidence IPI] [PMID 17881380]; GO_component: GO:0000172 - ribonuclease MRP complex [Evidence IDA] [PMID 9620854]; GO_function: GO:0003723 - RNA binding [Evidence IDA] [PMID 23700311]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0000171 - ribonuclease MRP activity [Evidence IMP] [PMID 16618965]; GO_function: GO:0004526 - ribonuclease P activity [Evidence IEA,IEA]; GO_function: GO:0004526 - ribonuclease P activity [Evidence IMP] [PMID 16618965]; GO_process: GO:0090501 - RNA phosphodiester bond hydrolysis [Evidence IEA,IEA]; GO_process: GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic [Evidence IEA,IEA]; GO_process: GO:0006396 - RNA processing [Evidence IEA]; GO_process: GO:0034965 - intronic box C/D snoRNA processing [Evidence IDA] [PMID 18713869]; GO_process: GO:0006379 - mRNA cleavage [Evidence IDA] [PMID 14729943]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0006364 - rRNA processing [Evidence IMP] [PMID 7926742]; GO_process: GO:0001682 - tRNA 5'-leader removal [Evidence IEA]; GO_process: GO:0008033 - tRNA processing [Evidence IEA]; GO_process: GO:0008033 - tRNA processing [Evidence IMP] [PMID 7926742]; Pop1p 3966350 POP1 30033045 POP1 Sugiyamaella lignohabitans Pop1p XP_018735461.1 3963894 R 796027 CDS AWJ20_1263 30033046 3967235..3967471 A 1 NC_031672.1 uncharacterized protein 3967471 30033046 AWJ20_1263 Sugiyamaella lignohabitans uncharacterized protein XP_018735462.1 3967235 D 796027 CDS AWJ20_1264 30033047 3967836..3969572 A 1 NC_031672.1 Mannosyltransferase, involved in N-linked glycosylation; catalyzes both the transfer of seventh mannose residue on B-arm and ninth mannose residue on the C-arm from Dol-P-Man to lipid-linked oligosaccharides; mutation of the human ortholog causes type 1 congenital disorders of glycosylation; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IMP,ISS] [PMID 8692962]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0052926 - dol-P-Man:Man(6)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase activity [Evidence IEA]; GO_function: GO:0052918 - dol-P-Man:Man(8)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase activity [Evidence IEA]; GO_function: GO:0004376 - glycolipid mannosyltransferase activity [Evidence IMP] [PMID 15987956]; GO_function: GO:0000030 - mannosyltransferase activity [Evidence IMP,ISS] [PMID 8692962]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA,IEA]; GO_process: GO:0006488 - dolichol-linked oligosaccharide biosynthetic process [Evidence IMP] [PMID 15987956]; GO_process: GO:0097502 - mannosylation [Evidence IEA]; GO_process: GO:0006486 - protein glycosylation [Evidence IEA]; GO_process: GO:0006486 - protein glycosylation [Evidence IMP] [PMID 8692962]; dolichyl-P-Man:Man(6)GlcNAc(2)-PP-dolichol alpha-1,2-mannosyltransferase 3969572 ALG9 30033047 ALG9 Sugiyamaella lignohabitans dolichyl-P-Man:Man(6)GlcNAc(2)-PP-dolichol alpha-1,2-mannosyltransferase XP_018735463.1 3967836 D 796027 CDS AWJ20_1265 30033048 complement(3969798..3970925) A 1 NC_031672.1 Adenylosuccinate synthase; catalyzes the first step in synthesis of adenosine monophosphate from inosine 5'monophosphate during purine nucleotide biosynthesis; exhibits binding to single-stranded autonomously replicating (ARS) core sequence; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0003688 - DNA replication origin binding [Evidence IDA] [PMID 8706758]; GO_function: GO:0005525 - GTP binding [Evidence IEA,IEA,IEA]; GO_function: GO:0004019 - adenylosuccinate synthase activity [Evidence IEA,IEA,IEA]; GO_function: GO:0004019 - adenylosuccinate synthase activity [Evidence IDA] [PMID 10417315]; GO_function: GO:0004019 - adenylosuccinate synthase activity [Evidence IMP] [PMID 5807803]; GO_function: GO:0004019 - adenylosuccinate synthase activity [Evidence IDA] [PMID 8706758]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0000287 - magnesium ion binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0044208 - 'de novo' AMP biosynthetic process [Evidence IEA]; GO_process: GO:0006167 - AMP biosynthetic process [Evidence IEA]; GO_process: GO:0006164 - purine nucleotide biosynthetic process [Evidence IEA,IEA,IEA]; GO_process: GO:0006164 - purine nucleotide biosynthetic process [Evidence IMP] [PMID 5807803]; adenylosuccinate synthase 3970925 ADE12 30033048 ADE12 Sugiyamaella lignohabitans adenylosuccinate synthase XP_018735464.1 3969798 R 796027 CDS AWJ20_1266 30033049 3972371..3973294 A 1 NC_031672.1 Alkaline phosphatase specific for p-nitrophenyl phosphate; also has protein phosphatase activity; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0004035 - alkaline phosphatase activity [Evidence IDA] [PMID 9561742]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016791 - phosphatase activity [Evidence IEA,IEA]; GO_function: GO:0004721 - phosphoprotein phosphatase activity [Evidence IDA] [PMID 9561742]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0006470 - protein dephosphorylation [Evidence IDA] [PMID 9561742]; Pho13p 3973294 PHO13 30033049 PHO13 Sugiyamaella lignohabitans Pho13p XP_018735465.1 3972371 D 796027 CDS AWJ20_1267 30033050 3974167..3975372 A 1 NC_031672.1 Vacuolar proteinase B (yscB) with H3 N-terminal endopeptidase activity; serine protease of the subtilisin family; involved in protein degradation in the vacuole and required for full protein degradation during sporulation; activity inhibited by Pbi2p; protein abundance increases in response to DNA replication stress; PRB1 has a paralog, YSP3, that arose from the whole genome duplication; GO_component: GO:0005619 - ascospore wall [Evidence IBA]; GO_component: GO:0000324 - fungal-type vacuole [Evidence TAS] [PMID 2674123]; GO_component: GO:0000328 - fungal-type vacuole lumen [Evidence TAS] [PMID 9529893]; GO_component: GO:0005773 - vacuole [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0042802 - identical protein binding [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_function: GO:0004252 - serine-type endopeptidase activity [Evidence IEA]; GO_function: GO:0004252 - serine-type endopeptidase activity [Evidence ISA] [PMID 3325823]; GO_function: GO:0004252 - serine-type endopeptidase activity [Evidence IMP] [PMID 377296]; GO_function: GO:0004252 - serine-type endopeptidase activity [Evidence IMP] [PMID 385314]; GO_function: GO:0008236 - serine-type peptidase activity [Evidence IEA]; GO_process: GO:0009267 - cellular response to starvation [Evidence IMP] [PMID 2674123]; GO_process: GO:0043086 - negative regulation of catalytic activity [Evidence IEA]; GO_process: GO:0006508 - proteolysis [Evidence IBA,IEA,IEA]; GO_process: GO:0030435 - sporulation resulting in formation of a cellular spore [Evidence IMP] [PMID 2674123]; GO_process: GO:0007039 - vacuolar protein catabolic process [Evidence IMP] [PMID 2674123]; GO_process: GO:0007039 - vacuolar protein catabolic process [Evidence IMP] [PMID 385314]; proteinase B 3975372 PRB1 30033050 PRB1 Sugiyamaella lignohabitans proteinase B XP_018735466.1 3974167 D 796027 CDS AWJ20_1268 30033051 complement(3978026..3979447) A 1 NC_031672.1 Kynurenine aminotransferase; catalyzes formation of kynurenic acid from kynurenine; potential Cdc28p substrate; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 17034789]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 17034789]; GO_function: GO:0047536 - 2-aminoadipate transaminase activity [Evidence IDA] [PMID 19342587]; GO_function: GO:0004061 - arylformamidase activity [Evidence IDA] [PMID 18205391]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016212 - kynurenine-oxoglutarate transaminase activity [Evidence IEA]; GO_function: GO:0016212 - kynurenine-oxoglutarate transaminase activity [Evidence IDA,ISS] [PMID 18205391]; GO_function: GO:0030170 - pyridoxal phosphate binding [Evidence IEA]; GO_function: GO:0008483 - transaminase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0097053 - L-kynurenine catabolic process [Evidence IEA]; GO_process: GO:0009058 - biosynthetic process [Evidence IEA]; GO_process: GO:0034276 - kynurenic acid biosynthetic process [Evidence IDA,ISS] [PMID 18205391]; Bna3p 3979447 BNA3 30033051 BNA3 Sugiyamaella lignohabitans Bna3p XP_018735467.1 3978026 R 796027 CDS AWJ20_1269 30033052 3980505..3980861 A 1 NC_031672.1 Sdh8p 3980861 FMP21 30033052 FMP21 Sugiyamaella lignohabitans Sdh8p XP_018735468.1 3980505 D 796027 CDS AWJ20_1270 30033054 complement(3981387..3983789) A 1 NC_031672.1 Nucleoporin nup82 3983789 30033054 AWJ20_1270 Sugiyamaella lignohabitans Nucleoporin nup82 XP_018735469.1 3981387 R 796027 CDS AWJ20_1271 30033055 3984623..3985330 A 1 NC_031672.1 Component of the small subunit processome; involved in 40S ribosomal subunit biogenesis; interacts with snR30 and is required for dissociation of snR30 from large pre-ribosomal particles; has homology to PINc domain protein Fcf1p, although the PINc domain of Utp23p is not required for function; essential protein; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 14690591]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 16769905]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0032040 - small-subunit processome [Evidence IEA]; GO_component: GO:0032040 - small-subunit processome [Evidence IDA,IPI] [PMID 16769905]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0070181 - small ribosomal subunit rRNA binding [Evidence IDA,IMP] [PMID 24152547]; GO_process: GO:0000480 - endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 16769905]; GO_process: GO:0000447 - endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 16769905]; GO_process: GO:0000472 - endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 16769905]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; Utp23p 3985330 UTP23 30033055 UTP23 Sugiyamaella lignohabitans Utp23p XP_018735470.1 3984623 D 796027 CDS AWJ20_1272 30033056 complement(3985859..3986209) A 1 NC_031672.1 uncharacterized protein 3986209 30033056 AWJ20_1272 Sugiyamaella lignohabitans uncharacterized protein XP_018735471.1 3985859 R 796027 CDS AWJ20_1273 30033057 complement(3986413..3987684) A 1 NC_031672.1 Transcription factor atf1 3987684 30033057 AWJ20_1273 Sugiyamaella lignohabitans Transcription factor atf1 XP_018735472.1 3986413 R 796027 CDS AWJ20_1274 30033058 3991123..3991623 A 1 NC_031672.1 uncharacterized protein 3991623 30033058 AWJ20_1274 Sugiyamaella lignohabitans uncharacterized protein XP_018735473.1 3991123 D 796027 CDS AWJ20_1275 30033059 complement(3991788..3995597) A 1 NC_031672.1 Vacuolar glutathione S-conjugate transporter; member of ATP-binding cassette family; ATPase activity required to support vacuole fusion; forms stable complexes with vacuole fusion machinery; regulates Vam7p recruitment to vacuoles; has role in detoxifying metals such as cadmium, mercury, and arsenite; also transports unconjugated bilirubin, selenodigluthatione, and oxidized glutathione; similar to human cystic fibrosis protein CFTR; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 23658021]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 8692889]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016887 - ATPase activity [Evidence IEA]; GO_function: GO:0042626 - ATPase activity, coupled to transmembrane movement of substances [Evidence IEA]; GO_function: GO:0015127 - bilirubin transmembrane transporter activity [Evidence IGI,IMP] [PMID 10790694]; GO_function: GO:0015431 - glutathione S-conjugate-exporting ATPase activity [Evidence IDA] [PMID 10220408]; GO_function: GO:0015431 - glutathione S-conjugate-exporting ATPase activity [Evidence IDA] [PMID 12383937]; GO_function: GO:0015431 - glutathione S-conjugate-exporting ATPase activity [Evidence IDA] [PMID 12755704]; GO_function: GO:0015431 - glutathione S-conjugate-exporting ATPase activity [Evidence IDA] [PMID 9217966]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0015723 - bilirubin transport [Evidence IGI,IMP] [PMID 10790694]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0046686 - response to cadmium ion [Evidence IEA]; GO_process: GO:0010038 - response to metal ion [Evidence IDA] [PMID 10220408]; GO_process: GO:0010038 - response to metal ion [Evidence IDA] [PMID 12755704]; GO_process: GO:0010038 - response to metal ion [Evidence IDA] [PMID 9217966]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IMP] [PMID 10790694]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; GO_process: GO:0042144 - vacuole fusion, non-autophagic [Evidence IMP] [PMID 23658021]; ATP-binding cassette glutathione S-conjugate transporter YCF1 3995597 YCF1 30033059 YCF1 Sugiyamaella lignohabitans ATP-binding cassette glutathione S-conjugate transporter YCF1 XP_018735474.1 3991788 R 796027 CDS AWJ20_1276 30033060 3998109..3999737 A 1 NC_031672.1 Acyl-CoA:sterol acyltransferase; endoplasmic reticulum enzyme that contributes the major sterol esterification activity in the presence of oxygen; ARE2 has a paralog, ARE1, that arose from the whole genome duplication; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 10672016]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0008374 - O-acyltransferase activity [Evidence IEA]; GO_function: GO:0034736 - cholesterol O-acyltransferase activity [Evidence IEA]; GO_function: GO:0034737 - ergosterol O-acyltransferase activity [Evidence IGI,IMP] [PMID 10672016]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016746 - transferase activity, transferring acyl groups [Evidence IEA]; GO_process: GO:0008204 - ergosterol metabolic process [Evidence IGI,IMP] [PMID 10672016]; Are2p 3999737 ARE2 30033060 ARE2 Sugiyamaella lignohabitans Are2p XP_018735475.1 3998109 D 796027 CDS AWJ20_1277 30033061 complement(4000122..4000826) A 1 NC_031672.1 Putative metalloprotease of the mitochondrial inner membrane; required for processing of Atp6p; has an additional role in assembly of the F0 sector of the F1F0 ATP synthase complex; substrate of the Mia40p-Erv1p disulfide relay system, and folding is assisted by Mia40p; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IDA] [PMID 17135290]; GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IDA] [PMID 17135288]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004222 - metalloendopeptidase activity [Evidence IEA]; GO_function: GO:0008237 - metallopeptidase activity [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_process: GO:0034982 - mitochondrial protein processing [Evidence IMP] [PMID 17135288]; GO_process: GO:0033615 - mitochondrial proton-transporting ATP synthase complex assembly [Evidence IMP] [PMID 17135288]; GO_process: GO:0016485 - protein processing [Evidence IMP] [PMID 17135290]; GO_process: GO:0006508 - proteolysis [Evidence IEA]; Atp23p 4000826 ATP23 30033061 ATP23 Sugiyamaella lignohabitans Atp23p XP_018735476.1 4000122 R 796027 CDS AWJ20_1278 30033062 4001152..4001496 A 1 NC_031672.1 uncharacterized protein 4001496 30033062 AWJ20_1278 Sugiyamaella lignohabitans uncharacterized protein XP_018735477.1 4001152 D 796027 CDS AWJ20_1279 30033063 4001527..4001859 A 1 NC_031672.1 uncharacterized protein 4001859 30033063 AWJ20_1279 Sugiyamaella lignohabitans uncharacterized protein XP_018735478.1 4001527 D 796027 CDS AWJ20_1280 30033065 complement(4001986..4004007) A 1 NC_031672.1 Mitochondrial matrix GTPase; associates with mitochondrial ribosomes; important for translation under temperature and nutrient stress; may have a role in translational fidelity; similar to bacterial LepA elongation factor; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA]; GO_component: GO:0005759 - mitochondrial matrix [Evidence IDA] [PMID 18442968]; GO_component: GO:0005761 - mitochondrial ribosome [Evidence IDA] [PMID 18442968]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_function: GO:0005525 - GTP binding [Evidence IEA,IEA,IEA]; GO_function: GO:0003924 - GTPase activity [Evidence IEA,IEA]; GO_function: GO:0003924 - GTPase activity [Evidence IDA] [PMID 16415861]; GO_function: GO:0003924 - GTPase activity [Evidence ISS] [PMID 8553703]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0043022 - ribosome binding [Evidence IEA]; GO_function: GO:0043022 - ribosome binding [Evidence IDA] [PMID 18442968]; GO_process: GO:0006184 - GTP catabolic process [Evidence IEA,IEA]; GO_process: GO:0045727 - positive regulation of translation [Evidence IEA]; GO_process: GO:0045727 - positive regulation of translation [Evidence IMP] [PMID 18442968]; GO_process: GO:0006412 - translation [Evidence IEA]; GTPase GUF1 4004007 GUF1 30033065 GUF1 Sugiyamaella lignohabitans GTPase GUF1 XP_018735479.1 4001986 R 796027 CDS AWJ20_1281 30033066 complement(4004847..4007660) A 1 NC_031672.1 JmjC domain-containing histone demethylase; specifically demethylates H3K36 tri- and dimethyl modification states; associates with actively transcribed (RNAP II) regions in vivo and specifically targets H3K36 in its trimethylation state as its substrate; transcriptional repressor of PHR1; Rph1p phosphorylation during DNA damage is under control of the MEC1-RAD53 pathway; target of stess-induced hormesis; RPH1 has a paralog, GIS1, that arose from the whole genome duplication; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IC] [PMID 10523651]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0001078 - RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription [Evidence IDA,IMP] [PMID 10523651]; GO_function: GO:0051864 - histone demethylase activity (H3-K36 specific) [Evidence IDA,IMP] [PMID 17369256]; GO_function: GO:0051864 - histone demethylase activity (H3-K36 specific) [Evidence IDA,IMP] [PMID 17371840]; GO_function: GO:0032454 - histone demethylase activity (H3-K9 specific) [Evidence IDA] [PMID 17371840]; GO_function: GO:0046872 - metal ion binding [Evidence IEA,IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19111667]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19158363]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA,IMP] [PMID 21296759]; GO_process: GO:0016577 - histone demethylation [Evidence IDA,IMP] [PMID 17369256]; GO_process: GO:0016577 - histone demethylation [Evidence IDA,IMP] [PMID 17371840]; GO_process: GO:0000122 - negative regulation of transcription from RNA polymerase II promoter [Evidence IDA] [PMID 10523651]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Rph1p 4007660 RPH1 30033066 RPH1 Sugiyamaella lignohabitans Rph1p XP_018735480.1 4004847 R 796027 CDS AWJ20_1282 30033067 complement(4011416..4012759) A 1 NC_031672.1 S-adenosyl-L-homocysteine hydrolase; catabolizes S-adenosyl-L-homocysteine which is formed after donation of the activated methyl group of S-adenosyl-L-methionine (AdoMet) to an acceptor; regulates cellular lipid homoeostasis by regulating phosphatidylcholine(PC)synthesis and triacylglycerol (TG) levels; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0004013 - adenosylhomocysteinase activity [Evidence IEA,IEA]; GO_function: GO:0004013 - adenosylhomocysteinase activity [Evidence ISA] [PMID 15556636]; GO_function: GO:0004013 - adenosylhomocysteinase activity [Evidence IMP] [PMID 18591246]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_process: GO:0019510 - S-adenosylhomocysteine catabolic process [Evidence ISA] [PMID 15556636]; GO_process: GO:0019510 - S-adenosylhomocysteine catabolic process [Evidence IMP] [PMID 18591246]; GO_process: GO:0006555 - methionine metabolic process [Evidence NAS] [PMID 11752249]; GO_process: GO:0006730 - one-carbon metabolic process [Evidence IEA,IEA]; GO_process: GO:0006656 - phosphatidylcholine biosynthetic process [Evidence IMP] [PMID 18591246]; GO_process: GO:0006641 - triglyceride metabolic process [Evidence IMP] [PMID 18591246]; adenosylhomocysteinase 4012759 SAH1 30033067 SAH1 Sugiyamaella lignohabitans adenosylhomocysteinase XP_018735481.1 4011416 R 796027 CDS AWJ20_1283 30033068 4014497..4015927 A 1 NC_031672.1 Co-chaperone that stimulates HSP70 protein Ssc1p ATPase activity; involved in protein folding/refolding in the mitochodrial matrix; required for proteolysis of misfolded proteins; member of the HSP40 (DnaJ) family of chaperones; GO_component: GO:0031314 - extrinsic component of mitochondrial inner membrane [Evidence IDA] [PMID 8168133]; GO_component: GO:0005759 - mitochondrial matrix [Evidence IDA] [PMID 15383543]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0001671 - ATPase activator activity [Evidence IDA] [PMID 9973563]; GO_function: GO:0031072 - heat shock protein binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0051082 - unfolded protein binding [Evidence IEA]; GO_function: GO:0051082 - unfolded protein binding [Evidence IMP] [PMID 8943361]; GO_process: GO:0006458 - 'de novo' protein folding [Evidence IMP] [PMID 8168133]; GO_process: GO:0006515 - misfolded or incompletely synthesized protein catabolic process [Evidence IMP] [PMID 7957078]; GO_process: GO:0000002 - mitochondrial genome maintenance [Evidence IMP] [PMID 10567545]; GO_process: GO:0006457 - protein folding [Evidence IEA]; GO_process: GO:0042026 - protein refolding [Evidence IMP] [PMID 8168133]; GO_process: GO:0042026 - protein refolding [Evidence IDA] [PMID 9973563]; GO_process: GO:0009408 - response to heat [Evidence IEA]; GO_process: GO:0009408 - response to heat [Evidence IMP] [PMID 8603724]; GO_process: GO:0006950 - response to stress [Evidence IEA]; Mdj1p 4015927 MDJ1 30033068 MDJ1 Sugiyamaella lignohabitans Mdj1p XP_018735482.1 4014497 D 796027 CDS AWJ20_1284 30033069 4019282..4021918 A 1 NC_031672.1 uncharacterized protein 4021918 30033069 AWJ20_1284 Sugiyamaella lignohabitans uncharacterized protein XP_018735483.1 4019282 D 796027 CDS AWJ20_1285 30033070 4022685..4023509 A 1 NC_031672.1 uncharacterized protein 4023509 30033070 AWJ20_1285 Sugiyamaella lignohabitans uncharacterized protein XP_018735484.1 4022685 D 796027 CDS AWJ20_1286 30033071 4037048..4038583 A 1 NC_031672.1 uncharacterized protein 4038583 30033071 AWJ20_1286 Sugiyamaella lignohabitans uncharacterized protein XP_018735485.1 4037048 D 796027 CDS AWJ20_1287 30033072 4038996..4040693 A 1 NC_031672.1 uncharacterized protein 4040693 30033072 AWJ20_1287 Sugiyamaella lignohabitans uncharacterized protein XP_018735486.1 4038996 D 796027 CDS AWJ20_1288 30033073 complement(4040851..4042032) A 1 NC_031672.1 uncharacterized protein 4042032 30033073 AWJ20_1288 Sugiyamaella lignohabitans uncharacterized protein XP_018735487.1 4040851 R 796027 CDS AWJ20_1289 30033074 4043574..4045370 A 1 NC_031672.1 uncharacterized protein 4045370 30033074 AWJ20_1289 Sugiyamaella lignohabitans uncharacterized protein XP_018735488.1 4043574 D 796027 CDS AWJ20_1290 30033076 complement(4045445..4046281) A 1 NC_031672.1 top hit is XP_002839470.1 originated in Tuber melanosporum Mel28; conserved fungal protein; uncharacterized protein 4046281 tam14 30033076 tam14 Sugiyamaella lignohabitans uncharacterized protein XP_018735489.1 4045445 R 796027 CDS AWJ20_1291 30033077 complement(4046866..4049136) A 1 NC_031672.1 serine/threonine protein kinase KNS1 4049136 KNS1 30033077 KNS1 Sugiyamaella lignohabitans serine/threonine protein kinase KNS1 XP_018735490.1 4046866 R 796027 CDS AWJ20_1292 30033078 4053605..4055299 A 1 NC_031672.1 Specificity factor required for Rsp5p-dependent ubiquitination; also required for sorting of specific cargo proteins at the multivesicular body; mRNA is targeted to the bud via the mRNA transport system involving She2p; GO_component: GO:0005768 - endosome [Evidence IEA]; GO_component: GO:0005768 - endosome [Evidence IDA] [PMID 14562095]; GO_component: GO:0005768 - endosome [Evidence IDA] [PMID 18367543]; GO_component: GO:0010008 - endosome membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0008536 - Ran GTPase binding [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0043328 - protein targeting to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway [Evidence IGI] [PMID 18367543]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Ear1p 4055299 EAR1 30033078 EAR1 Sugiyamaella lignohabitans Ear1p XP_018735491.1 4053605 D 796027 CDS AWJ20_1293 30033079 4056021..4057532 A 1 NC_031672.1 uncharacterized protein 4057532 30033079 AWJ20_1293 Sugiyamaella lignohabitans uncharacterized protein XP_018735492.1 4056021 D 796027 CDS AWJ20_1294 30033080 complement(4057860..4058531) A 1 NC_031672.1 Sedoheptulose bisphosphatase involved in riboneogenesis; dephosphorylates sedoheptulose 1,7-bisphosphate, which is converted via the nonoxidative pentose phosphate pathway to ribose-5-phosphate; facilitates the conversion of glycolytic intermediates to pentose phosphate units; also has fructose 1,6-bisphosphatase activity but this is probably not biologically relevant, since deletion does not affect FBP levels; GFP-fusion protein localizes to the cytoplasm and nucleus; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0050278 - sedoheptulose-bisphosphatase activity [Evidence IEA]; GO_function: GO:0050278 - sedoheptulose-bisphosphatase activity [Evidence IDA,IMP] [PMID 21663798]; GO_process: GO:0005975 - carbohydrate metabolic process [Evidence IEA]; GO_process: GO:0016311 - dephosphorylation [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; GO_process: GO:0046390 - ribose phosphate biosynthetic process [Evidence IDA,IMP] [PMID 21663798]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; Shb17p 4058531 SHB17 30033080 SHB17 Sugiyamaella lignohabitans Shb17p XP_018735493.1 4057860 R 796027 CDS AWJ20_1295 30033081 complement(4059134..4059916) A 1 NC_031672.1 uncharacterized protein 4059916 30033081 AWJ20_1295 Sugiyamaella lignohabitans uncharacterized protein XP_018735494.1 4059134 R 796027 CDS AWJ20_1296 30033082 complement(4060875..4062587) A 1 NC_031672.1 Hsp90 cochaperone; interacts with the Ssa group of the cytosolic Hsp70 chaperones and activates Ssa1p ATPase activity; interacts with Hsp90 chaperones and inhibits their ATPase activity; homolog of mammalian Hop; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IPI] [PMID 12525481]; GO_function: GO:0042030 - ATPase inhibitor activity [Evidence IDA] [PMID 21170051]; GO_function: GO:0030544 - Hsp70 protein binding [Evidence IDA] [PMID 12716905]; GO_function: GO:0051879 - Hsp90 protein binding [Evidence IDA] [PMID 12525481]; GO_function: GO:0051879 - Hsp90 protein binding [Evidence IDA] [PMID 9927435]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 21124907]; GO_process: GO:0006457 - protein folding [Evidence IGI,IMP] [PMID 8972212]; GO_process: GO:0006950 - response to stress [Evidence IEA]; Hsp90 cochaperone STI1 4062587 STI1 30033082 STI1 Sugiyamaella lignohabitans Hsp90 cochaperone STI1 XP_018735495.1 4060875 R 796027 CDS AWJ20_1297 30033083 4063384..4064709 A 1 NC_031672.1 Phosphatidylinositol 3,5-bisphosphate-binding protein; plays a role in micronucleophagy; belongs to the PROPPIN family of proteins; predicted to fold as a seven-bladed beta-propeller; displays punctate cytoplasmic localization; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 15103325]; GO_component: GO:0005768 - endosome [Evidence IEA]; GO_component: GO:0005768 - endosome [Evidence IDA] [PMID 18769150]; GO_component: GO:0010008 - endosome membrane [Evidence IEA]; GO_component: GO:0019898 - extrinsic component of membrane [Evidence IDA] [PMID 18769150]; GO_component: GO:0000324 - fungal-type vacuole [Evidence IDA] [PMID 15155809]; GO_component: GO:0031902 - late endosome membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0031090 - organelle membrane [Evidence IBA]; GO_function: GO:0080025 - phosphatidylinositol-3,5-bisphosphate binding [Evidence IBA]; GO_function: GO:0080025 - phosphatidylinositol-3,5-bisphosphate binding [Evidence IDA] [PMID 15103325]; GO_process: GO:0034727 - piecemeal microautophagy of nucleus [Evidence IMP] [PMID 18769150]; GO_process: GO:0042594 - response to starvation [Evidence IBA]; Hsv2p 4064709 HSV2 30033083 HSV2 Sugiyamaella lignohabitans Hsv2p XP_018735496.1 4063384 D 796027 CDS AWJ20_1298 30033084 4066094..4066393 A 1 NC_031672.1 uncharacterized protein 4066393 30033084 AWJ20_1298 Sugiyamaella lignohabitans uncharacterized protein XP_018735497.1 4066094 D 796027 CDS AWJ20_1299 30033085 4067717..4068472 A 1 NC_031672.1 uncharacterized protein 4068472 30033085 AWJ20_1299 Sugiyamaella lignohabitans uncharacterized protein XP_018735498.1 4067717 D 796027 CDS AWJ20_1300 30033088 complement(4068596..4070899) A 1 NC_031672.1 uncharacterized protein 4070899 30033088 AWJ20_1300 Sugiyamaella lignohabitans uncharacterized protein XP_018735499.1 4068596 R 796027 CDS AWJ20_1301 30033089 complement(4071069..4072922) A 1 NC_031672.1 RNA helicase in the DEAD-box family; involved in RNA isomerization at the 5' splice site; GO_component: GO:0005682 - U5 snRNP [Evidence IDA] [PMID 11720284]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005681 - spliceosomal complex [Evidence TAS] [PMID 9476892]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004004 - ATP-dependent RNA helicase activity [Evidence TAS] [PMID 9476892]; GO_function: GO:0008026 - ATP-dependent helicase activity [Evidence IEA]; GO_function: GO:0004386 - helicase activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0008380 - RNA splicing [Evidence IEA]; GO_process: GO:0000354 - cis assembly of pre-catalytic spliceosome [Evidence TAS] [PMID 9476892]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; Prp28p 4072922 PRP28 30033089 PRP28 Sugiyamaella lignohabitans Prp28p XP_018735500.1 4071069 R 796027 CDS AWJ20_1302 30033090 4073672..4075216 A 1 NC_031672.1 uncharacterized protein 4075216 30033090 AWJ20_1302 Sugiyamaella lignohabitans uncharacterized protein XP_018735501.1 4073672 D 796027 CDS AWJ20_1303 30033091 complement(4075389..4076822) A 1 NC_031672.1 Essential conserved subunit of CPF cleavage and polyadenylation factor; plays a role in 3' end formation of mRNA via the specific cleavage and polyadenylation of pre-mRNA, contains a putative RNA-binding zinc knuckle motif; relocalizes to the cytosol in response to hypoxia; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 22932476]; GO_component: GO:0005847 - mRNA cleavage and polyadenylation specificity factor complex [Evidence IPI] [PMID 11713271]; GO_component: GO:0005847 - mRNA cleavage and polyadenylation specificity factor complex [Evidence IDA] [PMID 12819204]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22932476]; GO_function: GO:0003723 - RNA binding [Evidence IC] [PMID 11713271]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0006379 - mRNA cleavage [Evidence IDA,IGI,IMP,IPI] [PMID 11713271]; GO_process: GO:0006378 - mRNA polyadenylation [Evidence IDA,IGI,IMP,IPI] [PMID 11713271]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; Mpe1p 4076822 MPE1 30033091 MPE1 Sugiyamaella lignohabitans Mpe1p XP_018735502.1 4075389 R 796027 CDS AWJ20_1304 30033092 complement(4078616..4079164) A 1 NC_031672.1 eIF3g subunit of the eukaryotic translation initiation factor 3 (eIF3); subunit of the core complex of eIF3; is essential for translation; stimulates resumption of ribosomal scanning during translation reinitiation; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA,IEA]; GO_component: GO:0016282 - eukaryotic 43S preinitiation complex [Evidence IEA]; GO_component: GO:0033290 - eukaryotic 48S preinitiation complex [Evidence IEA]; GO_component: GO:0005852 - eukaryotic translation initiation factor 3 complex [Evidence IEA,IEA]; GO_component: GO:0005852 - eukaryotic translation initiation factor 3 complex [Evidence IDA,IPI] [PMID 9660829]; GO_component: GO:0005852 - eukaryotic translation initiation factor 3 complex [Evidence IDA,IPI] [PMID 9671501]; GO_component: GO:0043614 - multi-eIF complex [Evidence IDA] [PMID 15838098]; GO_function: GO:0003723 - RNA binding [Evidence IEA,IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0003743 - translation initiation factor activity [Evidence IEA,IEA,IEA]; GO_function: GO:0003743 - translation initiation factor activity [Evidence IDA] [PMID 9671501]; GO_process: GO:0001731 - formation of translation preinitiation complex [Evidence IEA]; GO_process: GO:0006446 - regulation of translational initiation [Evidence IEA]; GO_process: GO:0006412 - translation [Evidence IEA]; GO_process: GO:0002188 - translation reinitiation [Evidence IMP] [PMID 20679478]; GO_process: GO:0006413 - translational initiation [Evidence IEA,IEA]; GO_process: GO:0006413 - translational initiation [Evidence IDA] [PMID 9671501]; Tif35p 4079164 TIF35 30033092 TIF35 Sugiyamaella lignohabitans Tif35p XP_018735503.1 4078616 R 796027 CDS AWJ20_1305 30033093 4080306..4081172 A 1 NC_031672.1 Inositol monophosphatase; involved in biosynthesis of inositol; enzymatic activity requires magnesium ions and is inhibited by lithium and sodium ions; inm1 inm2 double mutant lacks inositol auxotrophy; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0008934 - inositol monophosphate 1-phosphatase activity [Evidence IEA]; GO_function: GO:0008934 - inositol monophosphate 1-phosphatase activity [Evidence IDA,ISA] [PMID 10096091]; GO_function: GO:0008934 - inositol monophosphate 1-phosphatase activity [Evidence IGI,IMP] [PMID 12593845]; GO_function: GO:0052832 - inositol monophosphate 3-phosphatase activity [Evidence IEA]; GO_function: GO:0052833 - inositol monophosphate 4-phosphatase activity [Evidence IEA]; GO_function: GO:0052834 - inositol monophosphate phosphatase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_process: GO:0006021 - inositol biosynthetic process [Evidence IEA]; GO_process: GO:0046855 - inositol phosphate dephosphorylation [Evidence IDA] [PMID 10096091]; GO_process: GO:0046855 - inositol phosphate dephosphorylation [Evidence IGI,IMP] [PMID 12593845]; GO_process: GO:0046854 - phosphatidylinositol phosphorylation [Evidence IEA]; inositol monophosphate 1-phosphatase INM2 4081172 INM2 30033093 INM2 Sugiyamaella lignohabitans inositol monophosphate 1-phosphatase INM2 XP_018735504.1 4080306 D 796027 CDS AWJ20_1306 30033094 complement(4083598..4084452) A 1 NC_031672.1 uncharacterized protein 4084452 30033094 AWJ20_1306 Sugiyamaella lignohabitans uncharacterized protein XP_018735505.1 4083598 R 796027 CDS AWJ20_1307 30033095 4086710..4088263 A 1 NC_031672.1 Component of serine palmitoyltransferase; responsible along with Lcb2p for the first committed step in sphingolipid synthesis, which is the condensation of serine with palmitoyl-CoA to form 3-ketosphinganine; GO_component: GO:0035339 - SPOTS complex [Evidence IDA] [PMID 20182505]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0017059 - serine C-palmitoyltransferase complex [Evidence IMP] [PMID 1556076]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0030170 - pyridoxal phosphate binding [Evidence IEA]; GO_function: GO:0004758 - serine C-palmitoyltransferase activity [Evidence IEA]; GO_function: GO:0004758 - serine C-palmitoyltransferase activity [Evidence IMP] [PMID 1556076]; GO_function: GO:0004758 - serine C-palmitoyltransferase activity [Evidence IGI] [PMID 8058731]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016746 - transferase activity, transferring acyl groups [Evidence IEA]; GO_process: GO:0009058 - biosynthetic process [Evidence IEA]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0030148 - sphingolipid biosynthetic process [Evidence IMP] [PMID 1556076]; GO_process: GO:0006665 - sphingolipid metabolic process [Evidence IEA,IEA]; serine C-palmitoyltransferase LCB1 4088263 LCB1 30033095 LCB1 Sugiyamaella lignohabitans serine C-palmitoyltransferase LCB1 XP_018735506.1 4086710 D 796027 CDS AWJ20_1308 30033096 4088550..4089059 A 1 NC_031672.1 Mitochondrial inner membrane protein; required for proteolytic processing of Cox2p and its assembly into cytochrome c oxidase; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IDA] [PMID 10671482]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0051082 - unfolded protein binding [Evidence IDA] [PMID 10671482]; GO_process: GO:0009060 - aerobic respiration [Evidence IMP] [PMID 10671482]; GO_process: GO:0033617 - mitochondrial respiratory chain complex IV assembly [Evidence IMP] [PMID 10671482]; GO_process: GO:0016485 - protein processing [Evidence IMP] [PMID 10671482]; Cox20p 4089059 COX20 30033096 COX20 Sugiyamaella lignohabitans Cox20p XP_018735507.1 4088550 D 796027 CDS AWJ20_1309 30033097 4091592..4092836 A 1 NC_031672.1 uncharacterized protein 4092836 30033097 AWJ20_1309 Sugiyamaella lignohabitans uncharacterized protein XP_018735508.1 4091592 D 796027 CDS AWJ20_1310 30033099 complement(4093127..4094887) A 1 NC_031672.1 5-aminolevulinate synthase; catalyzes the first step in the heme biosynthetic pathway; an N-terminal signal sequence is required for localization to the mitochondrial matrix; expression is regulated by Hap2p-Hap3p; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA]; GO_component: GO:0005759 - mitochondrial matrix [Evidence IDA] [PMID 3023841]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0003870 - 5-aminolevulinate synthase activity [Evidence IEA,IEA]; GO_function: GO:0003870 - 5-aminolevulinate synthase activity [Evidence IMP] [PMID 24173275]; GO_function: GO:0003870 - 5-aminolevulinate synthase activity [Evidence IMP] [PMID 323256]; GO_function: GO:0003870 - 5-aminolevulinate synthase activity [Evidence IDA] [PMID 6381051]; GO_function: GO:0003870 - 5-aminolevulinate synthase activity [Evidence IMP] [PMID 7035824]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0030170 - pyridoxal phosphate binding [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA,IEA]; GO_function: GO:0016746 - transferase activity, transferring acyl groups [Evidence IEA]; GO_process: GO:0009058 - biosynthetic process [Evidence IEA]; GO_process: GO:0006783 - heme biosynthetic process [Evidence IEA]; GO_process: GO:0006783 - heme biosynthetic process [Evidence IMP] [PMID 323256]; GO_process: GO:0006783 - heme biosynthetic process [Evidence IMP] [PMID 7035824]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0006782 - protoporphyrinogen IX biosynthetic process [Evidence IEA]; GO_process: GO:0033014 - tetrapyrrole biosynthetic process [Evidence IEA]; 5-aminolevulinate synthase 4094887 HEM1 30033099 HEM1 Sugiyamaella lignohabitans 5-aminolevulinate synthase XP_018735509.1 4093127 R 796027 CDS AWJ20_1311 30033100 4096597..4097343 A 1 NC_031672.1 uncharacterized protein 4097343 30033100 AWJ20_1311 Sugiyamaella lignohabitans uncharacterized protein XP_018735510.1 4096597 D 796027 CDS AWJ20_1312 30033101 complement(4097536..4099629) A 1 NC_031672.1 uncharacterized protein 4099629 30033101 AWJ20_1312 Sugiyamaella lignohabitans uncharacterized protein XP_018735511.1 4097536 R 796027 CDS AWJ20_1313 30033102 4100698..4105101 A 1 NC_031672.1 Serine esterase; homolog of human neuropathy target esterase (NTE); Nte1p-mediated phosphatidylcholine turnover influences transcription factor Opi1p localization, affecting transcriptional regulation of phospholipid biosynthesis genes; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 14562095]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 15044461]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0004622 - lysophospholipase activity [Evidence IEA,IEA]; GO_function: GO:0004622 - lysophospholipase activity [Evidence IDA] [PMID 15044461]; GO_process: GO:0016042 - lipid catabolic process [Evidence IEA]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA,IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0034638 - phosphatidylcholine catabolic process [Evidence IMP] [PMID 15044461]; GO_process: GO:0046470 - phosphatidylcholine metabolic process [Evidence IEA]; GO_process: GO:0071071 - regulation of phospholipid biosynthetic process [Evidence IMP] [PMID 19841481]; Nte1p 4105101 NTE1 30033102 NTE1 Sugiyamaella lignohabitans Nte1p XP_018735512.1 4100698 D 796027 CDS AWJ20_1314 30033103 4106316..4107185 A 1 NC_031672.1 Mitochondrial ribosomal protein of the large subunit; homolog of prokaryotic L29 ribosomal protein; located at the ribosomal tunnel exit; GO_component: GO:0005762 - mitochondrial large ribosomal subunit [Evidence IDA] [PMID 20404317]; GO_component: GO:0005762 - mitochondrial large ribosomal subunit [Evidence IDA] [PMID 3060376]; GO_component: GO:0005761 - mitochondrial ribosome [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IDA] [PMID 20404317]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IDA] [PMID 3060376]; GO_process: GO:0032543 - mitochondrial translation [Evidence IC] [PMID 20404317]; GO_process: GO:0032543 - mitochondrial translation [Evidence IMP] [PMID 7828914]; GO_process: GO:0006412 - translation [Evidence IEA]; mitochondrial 54S ribosomal protein YmL4 4107185 MRPL4 30033103 MRPL4 Sugiyamaella lignohabitans mitochondrial 54S ribosomal protein YmL4 XP_018735513.1 4106316 D 796027 CDS AWJ20_1315 30033104 complement(4107272..4107805) A 1 NC_031672.1 Catalytic subunit of mitochondrial inner membrane peptidase complex; required for maturation of mitochondrial proteins of the intermembrane space; complex contains two catalytic subunits (Imp1p and Imp2p that differ in substrate specificity), and Som1p; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0042720 - mitochondrial inner membrane peptidase complex [Evidence IPI] [PMID 8132591]; GO_component: GO:0042720 - mitochondrial inner membrane peptidase complex [Evidence IPI] [PMID 8266095]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_function: GO:0004175 - endopeptidase activity [Evidence IDA] [PMID 8132591]; GO_function: GO:0004175 - endopeptidase activity [Evidence IMP] [PMID 8266095]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_function: GO:0008236 - serine-type peptidase activity [Evidence IEA]; GO_process: GO:0006627 - protein processing involved in protein targeting to mitochondrion [Evidence IMP] [PMID 8266095]; GO_process: GO:0006508 - proteolysis [Evidence IEA,IEA]; Imp2p 4107805 IMP2 30033104 IMP2 Sugiyamaella lignohabitans Imp2p XP_018735514.1 4107272 R 796027 CDS AWJ20_1316 30033105 complement(4109165..4110049) A 1 NC_031672.1 Exosome non-catalytic core component; involved in 3'-5' RNA processing and degradation in both the nucleus and the cytoplasm; has similarity to E. coli RNase PH and to human hRrp42p (EXOSC7); GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0000177 - cytoplasmic exosome (RNase complex) [Evidence IDA] [PMID 10465791]; GO_component: GO:0000177 - cytoplasmic exosome (RNase complex) [Evidence IDA] [PMID 19046973]; GO_component: GO:0000178 - exosome (RNase complex) [Evidence IEA]; GO_component: GO:0000176 - nuclear exosome (RNase complex) [Evidence IDA] [PMID 10465791]; GO_component: GO:0000176 - nuclear exosome (RNase complex) [Evidence IDA] [PMID 19046973]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0000467 - exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 10508172]; GO_process: GO:0000467 - exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 9390555]; GO_process: GO:0043628 - ncRNA 3'-end processing [Evidence IC] [PMID 10465791]; GO_process: GO:0070651 - nonfunctional rRNA decay [Evidence IC] [PMID 10465791]; GO_process: GO:0071042 - nuclear polyadenylation-dependent mRNA catabolic process [Evidence IC] [PMID 10465791]; GO_process: GO:0071038 - nuclear polyadenylation-dependent tRNA catabolic process [Evidence IDA] [PMID 15828860]; GO_process: GO:0071038 - nuclear polyadenylation-dependent tRNA catabolic process [Evidence IDA] [PMID 17643380]; GO_process: GO:0070478 - nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay [Evidence IC] [PMID 10465791]; GO_process: GO:0034427 - nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5' [Evidence IC] [PMID 10465791]; GO_process: GO:0070481 - nuclear-transcribed mRNA catabolic process, non-stop decay [Evidence IC] [PMID 10465791]; GO_process: GO:0071051 - polyadenylation-dependent snoRNA 3'-end processing [Evidence IC] [PMID 10465791]; GO_process: GO:0016075 - rRNA catabolic process [Evidence IMP] [PMID 10508172]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; Rrp42p 4110049 RRP42 30033105 RRP42 Sugiyamaella lignohabitans Rrp42p XP_018735515.1 4109165 R 796027 CDS AWJ20_1317 30033106 4110418..4111179 A 1 NC_031672.1 EF-hand superfamily Ca2+modulated protein 4111179 30033106 AWJ20_1317 Sugiyamaella lignohabitans EF-hand superfamily Ca2+modulated protein XP_018735516.1 4110418 D 796027 CDS AWJ20_1318 30033107 complement(4111348..4111998) A 1 NC_031672.1 Member of the p24 family involved in ER to Golgi transport; role in misfolded protein quality control; forms a heterotrimeric complex with Erp1, Erp2p, and Emp24; GO_component: GO:0030134 - ER to Golgi transport vesicle [Evidence IDA] [PMID 11157978]; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006888 - ER to Golgi vesicle-mediated transport [Evidence IPI] [PMID 11157978]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IEA]; Erv25p 4111998 ERV25 30033107 ERV25 Sugiyamaella lignohabitans Erv25p XP_018735517.1 4111348 R 796027 CDS AWJ20_1319 30033108 4113190..4115022 A 1 NC_031672.1 ATPase of the ATP-binding cassette (ABC) family; involved in 40S and 60S ribosome biogenesis, has similarity to Gcn20p; shuttles from nucleus to cytoplasm, physically interacts with Tif6p, Lsg1p; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 16260602]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 23212245]; GO_component: GO:0005840 - ribosome [Evidence IDA] [PMID 16702403]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016887 - ATPase activity [Evidence IEA]; GO_function: GO:0042624 - ATPase activity, uncoupled [Evidence IMP] [PMID 16260602]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0000056 - ribosomal small subunit export from nucleus [Evidence IMP] [PMID 16260602]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IMP] [PMID 16260602]; ATP-binding cassette family ATPase ARB1 4115022 ARB1 30033108 ARB1 Sugiyamaella lignohabitans ATP-binding cassette family ATPase ARB1 XP_018735518.1 4113190 D 796027 CDS AWJ20_1320 30033110 complement(4115275..4118685) A 1 NC_031672.1 2'-O-ribose methyltransferase; catalyzes the ribose methylation of the guanosine nucleotide at position 18 of tRNAs; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0008173 - RNA methyltransferase activity [Evidence IEA]; GO_function: GO:0008168 - methyltransferase activity [Evidence IEA]; GO_function: GO:0016423 - tRNA (guanine) methyltransferase activity [Evidence IDA] [PMID 9917067]; GO_function: GO:0009020 - tRNA (guanosine-2'-O-)-methyltransferase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006396 - RNA processing [Evidence IEA]; GO_process: GO:0032259 - methylation [Evidence IEA]; GO_process: GO:0030488 - tRNA methylation [Evidence IDA] [PMID 9917067]; GO_process: GO:0008033 - tRNA processing [Evidence IEA]; Trm3p 4118685 TRM3 30033110 TRM3 Sugiyamaella lignohabitans Trm3p XP_018735519.1 4115275 R 796027 CDS AWJ20_1321 30033111 4120177..4121904 A 1 NC_031672.1 Kinesin-related antiparallel sliding motor protein involved in mitotic spindle positioning; sliding activity promotes bipolar spindle assembly and maintenance of genome stability; also inhibits spindle elongation and promotes spindle disassembly in late anaphase; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005881 - cytoplasmic microtubule [Evidence IDA] [PMID 9693366]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA,IEA]; GO_component: GO:0005871 - kinesin complex [Evidence IEA]; GO_component: GO:0005871 - kinesin complex [Evidence TAS] [PMID 9153752]; GO_component: GO:0005874 - microtubule [Evidence IEA]; GO_component: GO:0005880 - nuclear microtubule [Evidence IDA] [PMID 9693366]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0008017 - microtubule binding [Evidence IEA]; GO_function: GO:0003777 - microtubule motor activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0008574 - plus-end-directed microtubule motor activity [Evidence IDA] [PMID 16906145]; GO_function: GO:0008574 - plus-end-directed microtubule motor activity [Evidence IDA] [PMID 16906148]; GO_function: GO:0070463 - tubulin-dependent ATPase activity [Evidence IDA] [PMID 16906148]; GO_process: GO:0000132 - establishment of mitotic spindle orientation [Evidence IMP] [PMID 16906148]; GO_process: GO:0000132 - establishment of mitotic spindle orientation [Evidence IGI,IMP] [PMID 9281582]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0007018 - microtubule-based movement [Evidence IEA]; GO_process: GO:0051228 - mitotic spindle disassembly [Evidence IMP] [PMID 23851487]; GO_process: GO:0051228 - mitotic spindle disassembly [Evidence IMP] [PMID 9813090]; GO_process: GO:0030472 - mitotic spindle organization in nucleus [Evidence IGI,IMP] [PMID 10525539]; GO_process: GO:0031115 - negative regulation of microtubule polymerization [Evidence IMP] [PMID 24616221]; GO_process: GO:0030473 - nuclear migration along microtubule [Evidence IMP] [PMID 9693366]; GO_process: GO:0070462 - plus-end specific microtubule depolymerization [Evidence IDA] [PMID 16906145]; GO_process: GO:0070462 - plus-end specific microtubule depolymerization [Evidence IDA] [PMID 16906148]; GO_process: GO:0032888 - regulation of mitotic spindle elongation [Evidence IMP] [PMID 24616221]; GO_process: GO:0090307 - spindle assembly involved in mitosis [Evidence IMP] [PMID 23851487]; tubulin-dependent ATPase KIP3 4121904 KIP3 30033111 KIP3 Sugiyamaella lignohabitans tubulin-dependent ATPase KIP3 XP_018735520.1 4120177 D 796027 CDS AWJ20_1322 30033112 complement(4125665..4126972) A 1 NC_031672.1 Protein required for uridine thiolation of Gln, Lys, and Glu tRNAs; required for the thiolation of uridine at the wobble position of Gln, Lys, and Glu tRNAs; has a role in urmylation and in invasive and pseudohyphal growth; inhibits replication of Brome mosaic virus in S. cerevisiae; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 18664566]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0016779 - nucleotidyltransferase activity [Evidence IEA]; GO_function: GO:0000049 - tRNA binding [Evidence IEA,IEA,IEA]; GO_function: GO:0000049 - tRNA binding [Evidence IDA] [PMID 19145231]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0032447 - protein urmylation [Evidence IEA]; GO_process: GO:0032447 - protein urmylation [Evidence IMP] [PMID 14551258]; GO_process: GO:0008033 - tRNA processing [Evidence IEA,IEA]; GO_process: GO:0034227 - tRNA thio-modification [Evidence IEA,IEA]; GO_process: GO:0002143 - tRNA wobble position uridine thiolation [Evidence IMP] [PMID 18664566]; GO_process: GO:0002143 - tRNA wobble position uridine thiolation [Evidence IMP] [PMID 19145231]; GO_process: GO:0002143 - tRNA wobble position uridine thiolation [Evidence IMP] [PMID 19151091]; GO_process: GO:0002098 - tRNA wobble uridine modification [Evidence IEA,IEA]; GO_process: GO:0002098 - tRNA wobble uridine modification [Evidence IMP] [PMID 17592039]; GO_process: GO:0002098 - tRNA wobble uridine modification [Evidence IMP] [PMID 18755837]; Ncs6p 4126972 NCS6 30033112 NCS6 Sugiyamaella lignohabitans Ncs6p XP_018735521.1 4125665 R 796027 CDS AWJ20_1323 30033113 4127305..4127847 A 1 NC_031672.1 uncharacterized protein 4127847 30033113 AWJ20_1323 Sugiyamaella lignohabitans uncharacterized protein XP_018735522.1 4127305 D 796027 CDS AWJ20_1324 30033114 complement(4128001..4128849) A 1 NC_031672.1 Subunit of cleavage polyadenylation factor (CPF); interacts directly with poly(A) polymerase (Pap1p) to regulate its activity; bridging factor that links Pap1p and the CPF complex via Yth1p; GO_component: GO:0005847 - mRNA cleavage and polyadenylation specificity factor complex [Evidence IDA] [PMID 12819204]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0003723 - RNA binding [Evidence IMP] [PMID 11238938]; GO_function: GO:0030674 - protein binding, bridging [Evidence IGI,IMP] [PMID 21282348]; GO_function: GO:0030674 - protein binding, bridging [Evidence IPI] [PMID 7736590]; GO_process: GO:0006379 - mRNA cleavage [Evidence IDA] [PMID 11344258]; GO_process: GO:0006378 - mRNA polyadenylation [Evidence IDA] [PMID 11344258]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; Fip1p 4128849 FIP1 30033114 FIP1 Sugiyamaella lignohabitans Fip1p XP_018735523.1 4128001 R 796027 CDS AWJ20_1325 30033115 4129887..4130876 A 1 NC_031672.1 Guanylyltransferase involved in mRNA 5' capping; subunit of the mRNA capping enzyme, which is a heterotetramer composed of two molecules of Ceg1p and a homodimer of Cet1p, the mRNA 5?-triphosphatase subunit; nuclear import of Ceg1p requires interaction with Cet1p; mammalian capping enzyme is a single bifunctional polypeptide; GO_component: GO:0031533 - mRNA cap methyltransferase complex [Evidence IEA]; GO_component: GO:0031533 - mRNA cap methyltransferase complex [Evidence IGI,IPI] [PMID 9710603]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IPI] [PMID 9832501]; GO_function: GO:0005525 - GTP binding [Evidence IEA]; GO_function: GO:0004484 - mRNA guanylyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0004484 - mRNA guanylyltransferase activity [Evidence IMP] [PMID 8718687]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016779 - nucleotidyltransferase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006370 - 7-methylguanosine mRNA capping [Evidence IEA,IEA]; GO_process: GO:0006370 - 7-methylguanosine mRNA capping [Evidence IMP] [PMID 8718687]; GO_process: GO:0006397 - mRNA processing [Evidence IEA,IEA]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IGI,IMP] [PMID 15226422]; Ceg1p 4130876 CEG1 30033115 CEG1 Sugiyamaella lignohabitans Ceg1p XP_018735524.1 4129887 D 796027 CDS AWJ20_1326 30033116 4131219..4132574 A 1 NC_031672.1 Mitochondrial ribosomal protein of the small subunit; has similarity to mammalian apoptosis mediator proteins; null mutation prevents induction of apoptosis by overproduction of metacaspase Mca1p; GO_component: GO:0005763 - mitochondrial small ribosomal subunit [Evidence IPI] [PMID 11278769]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IPI] [PMID 11278769]; GO_process: GO:0032543 - mitochondrial translation [Evidence IC] [PMID 11278769]; mitochondrial 37S ribosomal protein RSM23 4132574 RSM23 30033116 RSM23 Sugiyamaella lignohabitans mitochondrial 37S ribosomal protein RSM23 XP_018735525.1 4131219 D 796027 CDS AWJ20_1327 30033117 4135843..4136688 A 1 NC_031672.1 Plasma membrane transporter of the major facilitator superfamily; member of the 12-spanner drug:H(+) antiporter DHA1 family; involved in efflux of fluconazole, diazaborine, benomyl, methotrexate, and other drugs; expression induced in cells treated with the mycotoxin patulin; relocalizes from nucleus to plasma membrane upon DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 10903515]; GO_function: GO:0015238 - drug transmembrane transporter activity [Evidence IEA]; GO_function: GO:0015244 - fluconazole transporter activity [Evidence ISS] [PMID 9235926]; GO_process: GO:0006855 - drug transmembrane transport [Evidence IGI,IMP] [PMID 10572257]; GO_process: GO:0006855 - drug transmembrane transport [Evidence IGI] [PMID 9235926]; GO_process: GO:0015893 - drug transport [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence ISS] [PMID 9235926]; GO_process: GO:0006810 - transport [Evidence IEA]; Flr1p 4136688 FLR1 30033117 FLR1 Sugiyamaella lignohabitans Flr1p XP_018735526.1 4135843 D 796027 CDS AWJ20_1328 30033118 4136764..4137609 A 1 NC_031672.1 Plasma membrane transporter of the major facilitator superfamily; member of the 12-spanner drug:H(+) antiporter DHA1 family; involved in efflux of fluconazole, diazaborine, benomyl, methotrexate, and other drugs; expression induced in cells treated with the mycotoxin patulin; relocalizes from nucleus to plasma membrane upon DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 10903515]; GO_function: GO:0015238 - drug transmembrane transporter activity [Evidence IEA]; GO_function: GO:0015244 - fluconazole transporter activity [Evidence ISS] [PMID 9235926]; GO_process: GO:0006855 - drug transmembrane transport [Evidence IGI,IMP] [PMID 10572257]; GO_process: GO:0006855 - drug transmembrane transport [Evidence IGI] [PMID 9235926]; GO_process: GO:0015893 - drug transport [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence ISS] [PMID 9235926]; GO_process: GO:0006810 - transport [Evidence IEA]; Flr1p 4137609 FLR1 30033118 FLR1 Sugiyamaella lignohabitans Flr1p XP_018735527.1 4136764 D 796027 CDS AWJ20_1329 30033119 4138486..4139997 A 1 NC_031672.1 Protein with putative serine active lipase domain; ROG1 has a paralog, YDL109C, that arose from the whole genome duplication; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016788 - hydrolase activity, acting on ester bonds [Evidence IEA]; GO_function: GO:0016298 - lipase activity [Evidence NAS] [PMID 10341423]; GO_process: GO:0044255 - cellular lipid metabolic process [Evidence IMP] [PMID 10341423]; GO_process: GO:0016042 - lipid catabolic process [Evidence IEA,IEA]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; putative lipase ROG1 4139997 ROG1 30033119 ROG1 Sugiyamaella lignohabitans putative lipase ROG1 XP_018735528.1 4138486 D 796027 CDS AWJ20_1330 30033121 complement(4141009..4143294) A 1 NC_031672.1 uncharacterized protein 4143294 30033121 AWJ20_1330 Sugiyamaella lignohabitans uncharacterized protein XP_018735529.1 4141009 R 796027 CDS AWJ20_1331 30033122 4146293..4147312 A 1 NC_031672.1 Mitochondrial ribosomal protein of the small subunit; GO_component: GO:0005763 - mitochondrial small ribosomal subunit [Evidence IPI] [PMID 11278769]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA,IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IPI] [PMID 11278769]; GO_process: GO:0032543 - mitochondrial translation [Evidence IC] [PMID 11278769]; GO_process: GO:0006412 - translation [Evidence IEA]; mitochondrial 37S ribosomal protein MRPS9 4147312 MRPS9 30033122 MRPS9 Sugiyamaella lignohabitans mitochondrial 37S ribosomal protein MRPS9 XP_018735530.1 4146293 D 796027 CDS AWJ20_1332 30033123 complement(4148024..4150468) A 1 NC_031672.1 Non-catalytic subunit of the NatB N-terminal acetyltransferase; NatB catalyzes N-acetylation of proteins with specific N-terminal sequences; involved in mitochondrial inheritance and actin assembly; GO_component: GO:0031416 - NatB complex [Evidence IDA] [PMID 12783868]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_function: GO:0004596 - peptide alpha-N-acetyltransferase activity [Evidence IMP] [PMID 12783868]; GO_process: GO:0017196 - N-terminal peptidyl-methionine acetylation [Evidence IGI,IMP] [PMID 12783868]; GO_process: GO:0007010 - cytoskeleton organization [Evidence IMP] [PMID 9105043]; GO_process: GO:0000001 - mitochondrion inheritance [Evidence IGI,IMP] [PMID 9105043]; Mdm20p 4150468 MDM20 30033123 MDM20 Sugiyamaella lignohabitans Mdm20p XP_018735531.1 4148024 R 796027 CDS AWJ20_1333 30033124 4150873..4151769 A 1 NC_031672.1 Nucleolar protein; constituent of 66S pre-ribosomal particles; depletion leads to defects in rRNA processing and a block in the assembly of large ribosomal subunits; possesses a sigma(70)-like RNA-binding motif; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IPI] [PMID 11864607]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 11583614]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 17443350]; GO_function: GO:0008097 - 5S rRNA binding [Evidence IPI] [PMID 11864606]; GO_function: GO:0042134 - rRNA primary transcript binding [Evidence IPI] [PMID 11864606]; GO_process: GO:0000027 - ribosomal large subunit assembly [Evidence IPI] [PMID 11864607]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; Brx1p 4151769 BRX1 30033124 BRX1 Sugiyamaella lignohabitans Brx1p XP_018735532.1 4150873 D 796027 CDS AWJ20_1334 30033125 4153107..4155878 A 1 NC_031672.1 serine/threonine-protein kinase Sgk2 4155878 30033125 AWJ20_1334 Sugiyamaella lignohabitans serine/threonine-protein kinase Sgk2 XP_018735533.1 4153107 D 796027 CDS AWJ20_1335 30033126 4159102..4159875 A 1 NC_031672.1 Core component of transport protein particle (TRAPP) complexes I-III; TRAPP complexes are related multimeric guanine nucleotide-exchange factor for the GTPase Ypt1p, regulating ER-Golgi traffic (TRAPPI), intra-Golgi traffic (TRAPPII), endosome-Golgi traffic (TRAPPII and III) and autophagy (TRAPPIII); GO_component: GO:0005794 - Golgi apparatus [Evidence IEA,IEA]; GO_component: GO:1990070 - TRAPPI protein complex [Evidence IDA] [PMID 11239471]; GO_component: GO:1990071 - TRAPPII protein complex [Evidence IDA] [PMID 11239471]; GO_component: GO:1990072 - TRAPPIII protein complex [Evidence IDA] [PMID 20375281]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA,IEA]; GO_component: GO:0000407 - pre-autophagosomal structure [Evidence IEA]; GO_function: GO:0017112 - Rab guanyl-nucleotide exchange factor activity [Evidence IDA] [PMID 17110339]; GO_process: GO:0006888 - ER to Golgi vesicle-mediated transport [Evidence IGI] [PMID 10727015]; GO_process: GO:0006888 - ER to Golgi vesicle-mediated transport [Evidence IMP] [PMID 11239471]; GO_process: GO:0006914 - autophagy [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IEA]; Trs31p 4159875 TRS31 30033126 TRS31 Sugiyamaella lignohabitans Trs31p XP_018735534.1 4159102 D 796027 CDS AWJ20_1336 30033127 complement(4160168..4160752) A 1 NC_031672.1 Subunit of protein N-terminal acetyltransferase NatA; NatA is comprised of Nat1p, Ard1p, and Nat5p; acetylates many proteins and thus affects telomeric silencing, cell cycle, heat-shock resistance, mating, and sporulation; human Ard1p levels are elevated in cancer cells; protein abundance increases in response to DNA replication stress; GO_component: GO:0031415 - NatA complex [Evidence IDA] [PMID 14517307]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0022626 - cytosolic ribosome [Evidence IDA] [PMID 14517307]; GO_function: GO:0008080 - N-acetyltransferase activity [Evidence IEA]; GO_function: GO:0004596 - peptide alpha-N-acetyltransferase activity [Evidence IEA]; GO_function: GO:0004596 - peptide alpha-N-acetyltransferase activity [Evidence IDA,IMP] [PMID 2551674]; GO_function: GO:0061607 - peptide alpha-N-propionyltransferase activity [Evidence IMP] [PMID 23043182]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016746 - transferase activity, transferring acyl groups [Evidence IEA]; GO_process: GO:0006474 - N-terminal protein amino acid acetylation [Evidence IDA,IMP] [PMID 2551674]; GO_process: GO:0061606 - N-terminal protein amino acid propionylation [Evidence IMP] [PMID 23043182]; GO_process: GO:0016573 - histone acetylation [Evidence IMP] [PMID 17652096]; Ard1p 4160752 ARD1 30033127 ARD1 Sugiyamaella lignohabitans Ard1p XP_018735535.1 4160168 R 796027 CDS AWJ20_1337 30033128 4161704..4162756 A 1 NC_031672.1 Protein that activates Rub1p (NEDD8) before neddylation; acts together with Ula1p; may play a role in protein degradation; GFP-fusion protein localizes to the cytoplasm in a punctate pattern; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0019781 - NEDD8 activating enzyme activity [Evidence IDA,ISS] [PMID 9545234]; GO_function: GO:0016881 - acid-amino acid ligase activity [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0008641 - small protein activating enzyme activity [Evidence IEA]; GO_process: GO:0006464 - cellular protein modification process [Evidence IEA]; GO_process: GO:0045116 - protein neddylation [Evidence IEA]; GO_process: GO:0045116 - protein neddylation [Evidence IDA,IMP,ISS] [PMID 9545234]; NEDD8-activating protein UBA3 4162756 UBA3 30033128 UBA3 Sugiyamaella lignohabitans NEDD8-activating protein UBA3 XP_018735536.1 4161704 D 796027 CDS AWJ20_1338 30033129 complement(4162897..4165218) A 1 NC_031672.1 tethering complex ATP-binding subunit VPS33 4165218 VPS33 30033129 VPS33 Sugiyamaella lignohabitans tethering complex ATP-binding subunit VPS33 XP_018735537.1 4162897 R 796027 CDS AWJ20_1339 30033130 4168531..4169757 A 1 NC_031672.1 uncharacterized protein 4169757 30033130 AWJ20_1339 Sugiyamaella lignohabitans uncharacterized protein XP_018735538.1 4168531 D 796027 CDS AWJ20_1340 30033132 complement(4170447..4170833) A 1 NC_031672.1 uncharacterized protein 4170833 30033132 AWJ20_1340 Sugiyamaella lignohabitans uncharacterized protein XP_018735539.1 4170447 R 796027 CDS AWJ20_1341 30033133 4171172..4173193 A 1 NC_031672.1 Catalytic subunit of ADA and SAGA histone acetyltransferase complexes; modifies N-terminal lysines on histones H2B and H3; acetylates Rsc4p, a subunit of the RSC chromatin-remodeling complex, altering replication stress tolerance; relocalizes to the cytosol in response to hypoxia; mutant displays reduced transcription elongation in the G-less-based run-on (GLRO) assay; greater involvement in repression of RNAPII-dependent transcription than in activation; GO_component: GO:0005671 - Ada2/Gcn5/Ada3 transcription activator complex [Evidence IPI] [PMID 10490601]; GO_component: GO:0005671 - Ada2/Gcn5/Ada3 transcription activator complex [Evidence IDA] [PMID 7862114]; GO_component: GO:0000124 - SAGA complex [Evidence IDA] [PMID 9224714]; GO_component: GO:0000124 - SAGA complex [Evidence IDA] [PMID 9674426]; GO_component: GO:0046695 - SLIK (SAGA-like) complex [Evidence IDA] [PMID 12446794]; GO_component: GO:0000775 - chromosome, centromeric region [Evidence IDA] [PMID 18039853]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 22932476]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22932476]; GO_function: GO:0010484 - H3 histone acetyltransferase activity [Evidence IDA,IGI,IMP] [PMID 18458063]; GO_function: GO:0008080 - N-acetyltransferase activity [Evidence IEA]; GO_function: GO:0004402 - histone acetyltransferase activity [Evidence IEA]; GO_function: GO:0004402 - histone acetyltransferase activity [Evidence IDA] [PMID 8601308]; GO_function: GO:0070577 - lysine-acetylated histone binding [Evidence IDA] [PMID 20126658]; GO_function: GO:0003713 - transcription coactivator activity [Evidence TAS] [PMID 15075257]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016746 - transferase activity, transferring acyl groups [Evidence IEA]; GO_process: GO:0016568 - chromatin modification [Evidence IEA]; GO_process: GO:0016568 - chromatin modification [Evidence IDA] [PMID 9674426]; GO_process: GO:0016573 - histone acetylation [Evidence IGI,IMP] [PMID 18458063]; GO_process: GO:0016573 - histone acetylation [Evidence IMP] [PMID 9042963]; GO_process: GO:0016573 - histone acetylation [Evidence IDA] [PMID 9674426]; GO_process: GO:0032968 - positive regulation of transcription elongation from RNA polymerase II promoter [Evidence IGI,IMP] [PMID 19822662]; GO_process: GO:0034401 - regulation of transcription by chromatin organization [Evidence IMP] [PMID 11867538]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; histone acetyltransferase GCN5 4173193 GCN5 30033133 GCN5 Sugiyamaella lignohabitans histone acetyltransferase GCN5 XP_018735540.1 4171172 D 796027 CDS AWJ20_1342 30033134 complement(4173466..4173678) A 1 NC_031672.1 Alpha 5 subunit of the 20S proteasome; involved in ubiquitin-dependent catabolism; human homolog is subunit zeta; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IC] [PMID 9087403]; GO_component: GO:0042175 - nuclear outer membrane-endoplasmic reticulum membrane network [Evidence IC] [PMID 9087403]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IC] [PMID 9087403]; GO_component: GO:0000502 - proteasome complex [Evidence IEA]; GO_component: GO:0005839 - proteasome core complex [Evidence IEA]; GO_component: GO:0019773 - proteasome core complex, alpha-subunit complex [Evidence IEA]; GO_component: GO:0019773 - proteasome core complex, alpha-subunit complex [Evidence IDA] [PMID 9087403]; GO_component: GO:0034515 - proteasome storage granule [Evidence IDA] [PMID 18504300]; GO_function: GO:0004175 - endopeptidase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_function: GO:0004298 - threonine-type endopeptidase activity [Evidence IEA,IEA]; GO_process: GO:0010499 - proteasomal ubiquitin-independent protein catabolic process [Evidence IDA] [PMID 19162040]; GO_process: GO:0043161 - proteasome-mediated ubiquitin-dependent protein catabolic process [Evidence IDA] [PMID 11545745]; GO_process: GO:0043161 - proteasome-mediated ubiquitin-dependent protein catabolic process [Evidence IDA] [PMID 19029916]; GO_process: GO:0006508 - proteolysis [Evidence IEA]; GO_process: GO:0051603 - proteolysis involved in cellular protein catabolic process [Evidence IEA]; GO_process: GO:0006511 - ubiquitin-dependent protein catabolic process [Evidence IEA]; proteasome core particle subunit alpha 5 4173678 PUP2 30033134 PUP2 Sugiyamaella lignohabitans proteasome core particle subunit alpha 5 XP_018735541.1 4173466 R 796027 CDS AWJ20_1343 30033135 4175462..4177699 A 1 NC_031672.1 Component of the microtubule-nucleating Tub4p (gamma-tubulin) complex; interacts with Spc110p at the spindle pole body (SPB) inner plaque and with Spc72p at the SPB outer plaque; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA]; GO_component: GO:0000928 - gamma-tubulin small complex, spindle pole body [Evidence IPI] [PMID 9384578]; GO_component: GO:0005822 - inner plaque of spindle pole body [Evidence IDA] [PMID 9215630]; GO_component: GO:0005874 - microtubule [Evidence IEA]; GO_component: GO:0005815 - microtubule organizing center [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005824 - outer plaque of spindle pole body [Evidence IDA] [PMID 9215630]; GO_component: GO:0000922 - spindle pole [Evidence IEA]; GO_component: GO:0005816 - spindle pole body [Evidence IEA]; GO_component: GO:0005816 - spindle pole body [Evidence IDA] [PMID 22842922]; GO_function: GO:0005200 - structural constituent of cytoskeleton [Evidence IPI] [PMID 9215630]; GO_process: GO:0000226 - microtubule cytoskeleton organization [Evidence IEA]; GO_process: GO:0007020 - microtubule nucleation [Evidence TAS] [PMID 9153752]; Spc97p 4177699 SPC97 30033135 SPC97 Sugiyamaella lignohabitans Spc97p XP_018735542.1 4175462 D 796027 CDS AWJ20_1345 30033137 4179014..4181008 A 1 NC_031672.1 Checkpoint protein; involved in the activation of the DNA damage and meiotic pachytene checkpoints; subunit of a clamp loader that loads Rad17p-Mec3p-Ddc1p onto DNA; homolog of human and S. pombe Rad17 protein; GO_component: GO:0031389 - Rad17 RFC-like complex [Evidence IDA] [PMID 12604797]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IPI] [PMID 10660302]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0003689 - DNA clamp loader activity [Evidence IDA] [PMID 12604797]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0000077 - DNA damage checkpoint [Evidence IMP] [PMID 9564050]; GO_process: GO:0006281 - DNA repair [Evidence IEA,IEA]; GO_process: GO:0007049 - cell cycle [Evidence IEA,IEA]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0006289 - nucleotide-excision repair [Evidence IMP] [PMID 11267834]; GO_process: GO:0007131 - reciprocal meiotic recombination [Evidence IMP] [PMID 10511543]; Rad24p 4181008 RAD24 30033137 RAD24 Sugiyamaella lignohabitans Rad24p XP_018735543.1 4179014 D 796027 CDS AWJ20_1346 30033138 complement(4181201..4181968) A 1 NC_031672.1 Glutathione-dependent oxidoreductase; hydroperoxide and superoxide-radical responsive; monothiol glutaredoxin subfamily member along with Grx4p and Grx5p; protects cells from oxidative damage; with Grx4p, binds to Aft1p in iron-replete conditions, promoting its dissociation from promoters; evidence exists indicating that the translation start site is not Met1 as currently annotated, but rather Met36; GRX3 has a paralog, GRX4, that arose from the whole genome duplication; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 18281282]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 15456753]; GO_component: GO:0005634 - nucleus [Evidence IGI,IPI] [PMID 17074835]; GO_function: GO:0051537 - 2 iron, 2 sulfur cluster binding [Evidence IEA]; GO_function: GO:0001102 - RNA polymerase II activating transcription factor binding [Evidence IPI] [PMID 23045394]; GO_function: GO:0015036 - disulfide oxidoreductase activity [Evidence IGI,IMP,ISS] [PMID 10567543]; GO_function: GO:0009055 - electron carrier activity [Evidence IEA]; GO_function: GO:0051536 - iron-sulfur cluster binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0015035 - protein disulfide oxidoreductase activity [Evidence IEA]; GO_process: GO:0030036 - actin cytoskeleton organization [Evidence IMP] [PMID 20889785]; GO_process: GO:0045454 - cell redox homeostasis [Evidence IEA]; GO_process: GO:0006879 - cellular iron ion homeostasis [Evidence IGI,IPI] [PMID 17074835]; GO_process: GO:0034599 - cellular response to oxidative stress [Evidence IGI,IMP] [PMID 10567543]; GO_process: GO:0034599 - cellular response to oxidative stress [Evidence IMP] [PMID 17074835]; GO_process: GO:2000678 - negative regulation of transcription regulatory region DNA binding [Evidence IMP] [PMID 23045394]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; monothiol glutaredoxin GRX3 4181968 30033138 AWJ20_1346 Sugiyamaella lignohabitans monothiol glutaredoxin GRX3 XP_018735544.1 4181201 R 796027 CDS AWJ20_1347 30033139 complement(4182576..4184096) A 1 NC_031672.1 uncharacterized protein 4184096 30033139 AWJ20_1347 Sugiyamaella lignohabitans uncharacterized protein XP_018735545.1 4182576 R 796027 CDS AWJ20_1348 30033140 4186945..4189317 A 1 NC_031672.1 histone acetyltransferase NGG1 4189317 NGG1 30033140 NGG1 Sugiyamaella lignohabitans histone acetyltransferase NGG1 XP_018735546.1 4186945 D 796027 CDS AWJ20_1349 30033141 complement(4189627..4191075) A 1 NC_031672.1 Smaller subunit of the mitochondrial processing protease (MPP); essential processing enzyme that cleaves the N-terminal targeting sequences from mitochondrially imported proteins; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA]; GO_component: GO:0017087 - mitochondrial processing peptidase complex [Evidence IDA] [PMID 2905264]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA,IEA]; GO_function: GO:0004222 - metalloendopeptidase activity [Evidence IEA]; GO_function: GO:0004222 - metalloendopeptidase activity [Evidence IDA] [PMID 2905264]; GO_function: GO:0008237 - metallopeptidase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_process: GO:0006627 - protein processing involved in protein targeting to mitochondrion [Evidence IDA] [PMID 2007593]; GO_process: GO:0006508 - proteolysis [Evidence IEA,IEA]; Mas1p 4191075 MAS1 30033141 MAS1 Sugiyamaella lignohabitans Mas1p XP_018735547.1 4189627 R 796027 CDS AWJ20_1350 30033143 4191723..4192352 A 1 NC_031672.1 Mitochondrial inner membrane hypothetical protein; similar to Tim18p; a fraction copurifies with Sdh3p, but Shh4p is neither a stoichiometric subunit of succinate dehydrogenase nor of the TIM22 translocase; expression induced by nitrogen limitation in a GLN3, GAT1-dependent manner; SHH4 has a paralog, SDH4, that arose from the whole genome duplication; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005740 - mitochondrial envelope [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IDA] [PMID 10637294]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; GO_process: GO:0006099 - tricarboxylic acid cycle [Evidence IEA,IEA]; protein SHH4 4192352 SHH4 30033143 SHH4 Sugiyamaella lignohabitans protein SHH4 XP_018735548.1 4191723 D 796027 CDS AWJ20_1351 30033144 4193571..4194710 A 1 NC_031672.1 uncharacterized protein 4194710 30033144 AWJ20_1351 Sugiyamaella lignohabitans uncharacterized protein XP_018735549.1 4193571 D 796027 CDS AWJ20_1352 30033145 complement(4194994..4195677) A 1 NC_031672.1 uncharacterized protein 4195677 30033145 AWJ20_1352 Sugiyamaella lignohabitans uncharacterized protein XP_018735550.1 4194994 R 796027 CDS AWJ20_1353 30033146 4198989..4201463 A 1 NC_031672.1 Zinc finger transcription factor involved in arginine-responsive genes; Zn(2)-Cys(6) binuclear cluster domain type; involved in the regulation of arginine-responsive genes; acts with Arg80p and Arg82p; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 3311884]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0000981 - sequence-specific DNA binding RNA polymerase II transcription factor activity [Evidence IEA]; GO_function: GO:0003712 - transcription cofactor activity [Evidence IDA] [PMID 10688655]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0006525 - arginine metabolic process [Evidence IEA]; GO_process: GO:0000821 - regulation of arginine metabolic process [Evidence IMP] [PMID 10688655]; GO_process: GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence IEA]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA,IEA]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Arg81p 4201463 ARG81 30033146 ARG81 Sugiyamaella lignohabitans Arg81p XP_018735551.1 4198989 D 796027 CDS AWJ20_1354 30033147 4201950..4203500 A 1 NC_031672.1 uncharacterized protein 4203500 30033147 AWJ20_1354 Sugiyamaella lignohabitans uncharacterized protein XP_018735552.1 4201950 D 796027 CDS AWJ20_1355 30033148 complement(4203618..4204403) A 1 NC_031672.1 uncharacterized protein 4204403 30033148 AWJ20_1355 Sugiyamaella lignohabitans uncharacterized protein XP_018735553.1 4203618 R 796027 CDS AWJ20_1356 30033149 4206139..4207065 A 1 NC_031672.1 uncharacterized protein 4207065 30033149 AWJ20_1356 Sugiyamaella lignohabitans uncharacterized protein XP_018735554.1 4206139 D 796027 CDS AWJ20_1357 30033150 join(4207912..4209347,4209685..4212013) A 1 NC_031672.1 High affinity nicotinic acid plasma membrane permease; responsible for uptake of low levels of nicotinic acid; expression of the gene increases in the absence of extracellular nicotinic acid or para-aminobenzoate (PABA); GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0005887 - integral component of plasma membrane [Evidence ISS] [PMID 9678606]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0015663 - nicotinamide mononucleotide transmembrane transporter activity [Evidence IMP] [PMID 10869563]; GO_process: GO:0015890 - nicotinamide mononucleotide transport [Evidence IEP,IMP] [PMID 10869563]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Tna1p 4212013 TNA1 30033150 TNA1 Sugiyamaella lignohabitans Tna1p XP_018735555.1 4207912 D 796027 CDS AWJ20_1358 30033151 complement(4212296..4213054) A 1 NC_031672.1 BAG family molecular chaperone regulator Bag102 4213054 30033151 AWJ20_1358 Sugiyamaella lignohabitans BAG family molecular chaperone regulator Bag102 XP_018735556.1 4212296 R 796027 CDS AWJ20_1359 30033152 complement(4213343..4215208) A 1 NC_031672.1 Vacuolar integral membrane protein required for efflux of amino acids; required for efflux of amino acids during autophagic body breakdown in the vacuole; null mutation causes a gradual loss of viability during starvation; GO_component: GO:0071627 - integral component of fungal-type vacuolar membrane [Evidence IDA] [PMID 17021250]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0032974 - amino acid transmembrane export from vacuole [Evidence IMP] [PMID 17021250]; GO_process: GO:0006865 - amino acid transport [Evidence IEA]; GO_process: GO:0006914 - autophagy [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Atg22p 4215208 ATG22 30033152 ATG22 Sugiyamaella lignohabitans Atg22p XP_018735557.1 4213343 R 796027 CDS AWJ20_1360 30033154 complement(4217411..4217890) A 1 NC_031672.1 Cytoplasmic RNA-binding protein; shuttles between nucleus and cytoplasm and is exported from the nucleus in an mRNA export-dependent manner; associates with translating ribosomes; involved in heme regulation of Hap1p as a component of the HMC complex, also involved in the organization of actin filaments; contains a La motif; SRO9 has a paralog, SLF1, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0010494 - cytoplasmic stress granule [Evidence IDA] [PMID 23222640]; GO_component: GO:0005844 - polysome [Evidence IDA] [PMID 10564276]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IDA] [PMID 10564276]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_process: GO:0002181 - cytoplasmic translation [Evidence IPI] [PMID 10564276]; Sro9p 4217890 SRO9 30033154 SRO9 Sugiyamaella lignohabitans Sro9p XP_018735558.1 4217411 R 796027 CDS AWJ20_1361 30033155 4222512..4223534 A 1 NC_031672.1 UDP-glucose-4-epimerase; catalyzes the interconversion of UDP-galactose and UDP-D-glucose in galactose metabolism; also catalyzes the conversion of alpha-D-glucose or alpha-D-galactose to their beta-anomers; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 14764091]; GO_function: GO:0003978 - UDP-glucose 4-epimerase activity [Evidence IEA,IEA]; GO_function: GO:0003978 - UDP-glucose 4-epimerase activity [Evidence IMP] [PMID 14158615]; GO_function: GO:0003978 - UDP-glucose 4-epimerase activity [Evidence IDA] [PMID 14764091]; GO_function: GO:0004034 - aldose 1-epimerase activity [Evidence IEA]; GO_function: GO:0004034 - aldose 1-epimerase activity [Evidence IDA] [PMID 14764091]; GO_function: GO:0030246 - carbohydrate binding [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA,IEA]; GO_function: GO:0050662 - coenzyme binding [Evidence IEA]; GO_function: GO:0016853 - isomerase activity [Evidence IEA,IEA]; GO_process: GO:0005975 - carbohydrate metabolic process [Evidence IEA,IEA]; GO_process: GO:0044237 - cellular metabolic process [Evidence IEA]; GO_process: GO:0033499 - galactose catabolic process via UDP-galactose [Evidence IMP] [PMID 14158615]; GO_process: GO:0033499 - galactose catabolic process via UDP-galactose [Evidence IDA] [PMID 14764091]; GO_process: GO:0006012 - galactose metabolic process [Evidence IEA,IEA,IEA]; GO_process: GO:0019318 - hexose metabolic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; bifunctional UDP-glucose 4-epimerase/aldose 1-epimerase 4223534 GAL10 30033155 GAL10 Sugiyamaella lignohabitans bifunctional UDP-glucose 4-epimerase/aldose 1-epimerase XP_018735559.1 4222512 D 796027 CDS AWJ20_1362 30033156 4224133..4226331 A 1 NC_031672.1 uncharacterized protein 4226331 30033156 AWJ20_1362 Sugiyamaella lignohabitans uncharacterized protein XP_018735560.1 4224133 D 796027 CDS AWJ20_1363 30033157 4226799..4229231 A 1 NC_031672.1 Voltage-gated chloride channel; localized to the golgi, the endosomal system, and plasma membrane; involved in cation homeostasis; highly homologous to vertebrate voltage-gated chloride channels; modulates TBSV model (+) RNA virus replication by regulating copper metabolism; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0005794 - Golgi apparatus [Evidence IDA] [PMID 15710404]; GO_component: GO:0005797 - Golgi medial cisterna [Evidence IDA] [PMID 9614122]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA]; GO_component: GO:0034707 - chloride channel complex [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 17662057]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0005768 - endosome [Evidence IEA]; GO_component: GO:0005768 - endosome [Evidence IDA] [PMID 15710404]; GO_component: GO:0010008 - endosome membrane [Evidence IEA]; GO_component: GO:0000324 - fungal-type vacuole [Evidence IDA] [PMID 17662057]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 17662057]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0030554 - adenyl nucleotide binding [Evidence IEA]; GO_function: GO:0005254 - chloride channel activity [Evidence IEA]; GO_function: GO:0005216 - ion channel activity [Evidence IEA]; GO_function: GO:0005247 - voltage-gated chloride channel activity [Evidence IEA]; GO_function: GO:0005247 - voltage-gated chloride channel activity [Evidence IDA] [PMID 12074596]; GO_process: GO:0006878 - cellular copper ion homeostasis [Evidence IMP] [PMID 9520490]; GO_process: GO:0006878 - cellular copper ion homeostasis [Evidence IMP] [PMID 9614122]; GO_process: GO:0006879 - cellular iron ion homeostasis [Evidence IMP] [PMID 9520490]; GO_process: GO:1902476 - chloride transmembrane transport [Evidence IEA]; GO_process: GO:0006821 - chloride transport [Evidence IEA,IEA]; GO_process: GO:0034220 - ion transmembrane transport [Evidence IEA]; GO_process: GO:0006811 - ion transport [Evidence IEA]; GO_process: GO:0044070 - regulation of anion transport [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Gef1p 4229231 GEF1 30033157 GEF1 Sugiyamaella lignohabitans Gef1p XP_018735561.1 4226799 D 796027 CDS AWJ20_1364 30033158 complement(4229433..4230824) A 1 NC_031672.1 Subunit (60 kDa) of TFIID and SAGA complexes; involved in transcription initiation of RNA polymerase II and in chromatin modification, similar to histone H4; relocalizes to the cytosol in response to hypoxia; GO_component: GO:0000124 - SAGA complex [Evidence IDA] [PMID 9674426]; GO_component: GO:0046695 - SLIK (SAGA-like) complex [Evidence IDA] [PMID 12446794]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 22932476]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22932476]; GO_component: GO:0005669 - transcription factor TFIID complex [Evidence IDA] [PMID 10788514]; GO_component: GO:0005669 - transcription factor TFIID complex [Evidence IDA] [PMID 15448131]; GO_function: GO:0001102 - RNA polymerase II activating transcription factor binding [Evidence IDA,IPI] [PMID 12501245]; GO_function: GO:0001075 - RNA polymerase II core promoter sequence-specific DNA binding transcription factor activity involved in preinitiation complex assembly [Evidence IC]; GO_function: GO:0003682 - chromatin binding [Evidence IDA] [PMID 10817999]; GO_function: GO:0032947 - protein complex scaffold [Evidence IMP] [PMID 9844639]; GO_function: GO:0046982 - protein heterodimerization activity [Evidence IEA]; GO_process: GO:0006352 - DNA-templated transcription, initiation [Evidence IEA]; GO_process: GO:0051123 - RNA polymerase II transcriptional preinitiation complex assembly [Evidence IMP] [PMID 12840001]; GO_process: GO:0016568 - chromatin modification [Evidence IDA] [PMID 9674426]; GO_process: GO:0016573 - histone acetylation [Evidence IDA] [PMID 9674426]; GO_process: GO:0051090 - regulation of sequence-specific DNA binding transcription factor activity [Evidence IEA]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IDA] [PMID 12138208]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IDA] [PMID 15448131]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Taf6p 4230824 TAF6 30033158 TAF6 Sugiyamaella lignohabitans Taf6p XP_018735562.1 4229433 R 796027 CDS AWJ20_1365 30033159 4231018..4232859 A 1 NC_031672.1 uncharacterized protein 4232859 30033159 AWJ20_1365 Sugiyamaella lignohabitans uncharacterized protein XP_018735563.1 4231018 D 796027 CDS AWJ20_1366 30033160 complement(join(4233936..4236611,4236801..4237196)) A 1 NC_031672.1 RNA helicase in the DEAD-box family; necessary for prespliceosome formation, bridges U1 and U2 snRNPs and enables stable U2 snRNP association with intron RNA; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0008026 - ATP-dependent helicase activity [Evidence IEA]; GO_function: GO:0008186 - RNA-dependent ATPase activity [Evidence IDA] [PMID 8969184]; GO_function: GO:0004386 - helicase activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0008380 - RNA splicing [Evidence IEA]; GO_process: GO:0000348 - mRNA branch site recognition [Evidence TAS] [PMID 9476892]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; DEAD-box RNA helicase PRP5 4237196 PRP5 30033160 PRP5 Sugiyamaella lignohabitans DEAD-box RNA helicase PRP5 XP_018735564.1 4233936 R 796027 CDS AWJ20_1367 30033161 complement(4237442..4241806) A 1 NC_031672.1 Aminophospholipid translocase (flippase); localizes primarily to the plasma membrane; contributes to endocytosis, protein transport and cell polarity; type 4 P-type ATPase; DNF1 has a paralog, DNF2, that arose from the whole genome duplication; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA,IEA]; GO_component: GO:0005768 - endosome [Evidence IEA]; GO_component: GO:0010008 - endosome membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 12221123]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 12631737]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0015662 - ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism [Evidence ISS] [PMID 9224683]; GO_function: GO:0019829 - cation-transporting ATPase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0000287 - magnesium ion binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_function: GO:0004012 - phospholipid-translocating ATPase activity [Evidence IEA,IEA]; GO_function: GO:0004012 - phospholipid-translocating ATPase activity [Evidence IGI] [PMID 12631737]; GO_function: GO:0004012 - phospholipid-translocating ATPase activity [Evidence IGI,IMP] [PMID 17015438]; GO_process: GO:0006812 - cation transport [Evidence IEA]; GO_process: GO:0006897 - endocytosis [Evidence IGI,IMP] [PMID 12631737]; GO_process: GO:0007163 - establishment or maintenance of cell polarity [Evidence IGI] [PMID 15461661]; GO_process: GO:0006886 - intracellular protein transport [Evidence IGI] [PMID 12221123]; GO_process: GO:0006869 - lipid transport [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0045332 - phospholipid translocation [Evidence IGI] [PMID 12631737]; GO_process: GO:0045332 - phospholipid translocation [Evidence IGI,IMP] [PMID 17015438]; GO_process: GO:0015914 - phospholipid transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; aminophospholipid-translocating P4-type ATPase DNF1 4241806 DNF1 30033161 DNF1 Sugiyamaella lignohabitans aminophospholipid-translocating P4-type ATPase DNF1 XP_018735565.1 4237442 R 796027 CDS AWJ20_1368 30033162 complement(4244540..4245493) A 1 NC_031672.1 putative tyrosine protein phosphatase SIW14 4245493 SIW14 30033162 SIW14 Sugiyamaella lignohabitans putative tyrosine protein phosphatase SIW14 XP_018735566.1 4244540 R 796027 CDS AWJ20_1369 30033163 complement(4246914..4248374) A 1 NC_031672.1 Transcriptional activator 4248374 30033163 AWJ20_1369 Sugiyamaella lignohabitans Transcriptional activator XP_018735567.1 4246914 R 796027 CDS AWJ20_1370 30033165 complement(4252799..4254700) A 1 NC_031672.1 Essential ATP-binding protein required for DNA replication; component of the pre-replicative complex (pre-RC) which requires ORC to associate with chromatin and is in turn required for Mcm2-7p DNA association; homologous to S. pombe Cdc18p; relocalizes from nucleus to cytoplasm upon DNA replication stress; GO_component: GO:0031261 - DNA replication preinitiation complex [Evidence IDA] [PMID 9554851]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005656 - nuclear pre-replicative complex [Evidence IDA] [PMID 16824194]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0005524 - ATP binding [Evidence IMP] [PMID 10075735]; GO_function: GO:0005524 - ATP binding [Evidence IDA] [PMID 8083240]; GO_function: GO:0016887 - ATPase activity [Evidence IDA] [PMID 8083240]; GO_function: GO:0003688 - DNA replication origin binding [Evidence IDA] [PMID 16824194]; GO_function: GO:0003688 - DNA replication origin binding [Evidence IDA] [PMID 9288745]; GO_function: GO:0005525 - GTP binding [Evidence IDA] [PMID 8083240]; GO_function: GO:0003924 - GTPase activity [Evidence IDA] [PMID 8083240]; GO_function: GO:0003682 - chromatin binding [Evidence IMP] [PMID 10075735]; GO_function: GO:0003682 - chromatin binding [Evidence IDA] [PMID 9159120]; GO_function: GO:0003682 - chromatin binding [Evidence IDA] [PMID 9288745]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_function: GO:0005515 - protein binding [Evidence IPI] [PMID 10075735]; GO_function: GO:0005515 - protein binding [Evidence IPI] [PMID 9312054]; GO_process: GO:0006260 - DNA replication [Evidence IEA]; GO_process: GO:0000082 - G1/S transition of mitotic cell cycle [Evidence IMP] [PMID 10075735]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0006267 - pre-replicative complex assembly involved in nuclear cell cycle DNA replication [Evidence IMP] [PMID 10075735]; GO_process: GO:0006267 - pre-replicative complex assembly involved in nuclear cell cycle DNA replication [Evidence IDA] [PMID 16824194]; GO_process: GO:0006267 - pre-replicative complex assembly involved in nuclear cell cycle DNA replication [Evidence IMP] [PMID 8538771]; GO_process: GO:0006267 - pre-replicative complex assembly involved in nuclear cell cycle DNA replication [Evidence IMP] [PMID 9335335]; GO_process: GO:0030174 - regulation of DNA-dependent DNA replication initiation [Evidence IMP] [PMID 9990508]; GO_process: GO:0031938 - regulation of chromatin silencing at telomere [Evidence IMP] [PMID 16980387]; AAA family ATPase CDC6 4254700 CDC6 30033165 CDC6 Sugiyamaella lignohabitans AAA family ATPase CDC6 XP_018735568.1 4252799 R 796027 CDS AWJ20_1371 30033166 4255724..4256779 A 1 NC_031672.1 uncharacterized protein 4256779 30033166 AWJ20_1371 Sugiyamaella lignohabitans uncharacterized protein XP_018735569.1 4255724 D 796027 CDS AWJ20_1372 30033167 4257918..4259387 A 1 NC_031672.1 ER membrane protein involved in regulation of OLE1 transcription; inactive ER form dimerizes and one subunit is then activated by ubiquitin/proteasome-dependent processing followed by nuclear targeting; MGA2 has a paralog, SPT23, that arose from the whole genome duplication; GO_component: GO:0030176 - integral component of endoplasmic reticulum membrane [Evidence IDA,ISM] [PMID 11007476]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 19061897]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0070417 - cellular response to cold [Evidence IMP] [PMID 11855848]; GO_process: GO:0030466 - chromatin silencing at silent mating-type cassette [Evidence IGI] [PMID 11063674]; GO_process: GO:0048255 - mRNA stabilization [Evidence IMP] [PMID 15220333]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 11557770]; GO_process: GO:0061399 - positive regulation of transcription from RNA polymerase II promoter in response to cobalt ion [Evidence IMP] [PMID 11509659]; GO_process: GO:0061419 - positive regulation of transcription from RNA polymerase II promoter in response to hypoxia [Evidence IMP] [PMID 11509659]; GO_process: GO:0036083 - positive regulation of unsaturated fatty acid biosynthetic process by positive regulation of transcription from RNA polymerase II promoter [Evidence IGI] [PMID 9927444]; Mga2p 4259387 MGA2 30033167 MGA2 Sugiyamaella lignohabitans Mga2p XP_018735570.1 4257918 D 796027 CDS AWJ20_1373 30033168 4259649..4262150 A 1 NC_031672.1 ER membrane protein involved in regulation of OLE1 transcription; inactive ER form dimerizes and one subunit is then activated by ubiquitin/proteasome-dependent processing followed by nuclear targeting; SPT23 has a paralog, MGA2, that arose from the whole genome duplication; GO_component: GO:0030176 - integral component of endoplasmic reticulum membrane [Evidence IDA,ISM] [PMID 11007476]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11007476]; GO_function: GO:0003677 - DNA binding [Evidence IPI] [PMID 15343339]; GO_process: GO:0070417 - cellular response to cold [Evidence IGI] [PMID 11855848]; GO_process: GO:0030466 - chromatin silencing at silent mating-type cassette [Evidence IGI] [PMID 11063674]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 11557770]; GO_process: GO:0036083 - positive regulation of unsaturated fatty acid biosynthetic process by positive regulation of transcription from RNA polymerase II promoter [Evidence IGI] [PMID 9927444]; Spt23p 4262150 SPT23 30033168 SPT23 Sugiyamaella lignohabitans Spt23p XP_018735571.1 4259649 D 796027 CDS AWJ20_1374 30033169 4263496..4266201 A 1 NC_031672.1 uncharacterized protein 4266201 30033169 AWJ20_1374 Sugiyamaella lignohabitans uncharacterized protein XP_018735572.1 4263496 D 796027 CDS AWJ20_1375 30033170 complement(4266387..4267850) A 1 NC_031672.1 uncharacterized protein 4267850 30033170 AWJ20_1375 Sugiyamaella lignohabitans uncharacterized protein XP_018735573.1 4266387 R 796027 CDS AWJ20_1376 30033171 4268060..4268662 A 1 NC_031672.1 uncharacterized protein 4268662 30033171 AWJ20_1376 Sugiyamaella lignohabitans uncharacterized protein XP_018735574.1 4268060 D 796027 CDS AWJ20_1377 30033172 complement(4269086..4270765) A 1 NC_031672.1 Mannosyltransferase; involved in adding the 4th and 5th mannose residues of O-linked glycans; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0005794 - Golgi apparatus [Evidence ISS] [PMID 10521541]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0000033 - alpha-1,3-mannosyltransferase activity [Evidence IGI,IMP] [PMID 10521541]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA]; GO_process: GO:0006493 - protein O-linked glycosylation [Evidence IGI,IMP] [PMID 10521541]; GO_process: GO:0006486 - protein glycosylation [Evidence IEA,IEA]; Mnt2p 4270765 MNT2 30033172 MNT2 Sugiyamaella lignohabitans Mnt2p XP_018735575.1 4269086 R 796027 CDS AWJ20_1379 30033174 4273915..4274211 A 1 NC_031672.1 Ribosomal 60S subunit protein L26B; binds to 5.8S rRNA; non-essential even when paralog is also deleted; deletion has minimal affections on ribosome biosynthesis; homologous to mammalian ribosomal protein L26 and bacterial L24; RPL26B has a paralog, RPL26A, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0022625 - cytosolic large ribosomal subunit [Evidence IDA] [PMID 18782943]; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0015934 - large ribosomal subunit [Evidence IEA]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA,IEA]; GO_function: GO:0003723 - RNA binding [Evidence IDA] [PMID 6337137]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IDA] [PMID 18782943]; GO_process: GO:0002181 - cytoplasmic translation [Evidence IDA] [PMID 18782943]; GO_process: GO:0006412 - translation [Evidence IEA]; ribosomal 60S subunit protein L26B 4274211 RPL26B 30033174 RPL26B Sugiyamaella lignohabitans ribosomal 60S subunit protein L26B XP_018735576.1 4273915 D 796027 CDS AWJ20_1380 30033176 4275791..4277899 A 1 NC_031672.1 SAGA complex subunit SPT8 4277899 SPT8 30033176 SPT8 Sugiyamaella lignohabitans SAGA complex subunit SPT8 XP_018735577.1 4275791 D 796027 CDS AWJ20_1381 30033177 4278517..4279854 A 1 NC_031672.1 Uncharacterized protein C3H8.04 4279854 30033177 AWJ20_1381 Sugiyamaella lignohabitans Uncharacterized protein C3H8.04 XP_018735578.1 4278517 D 796027 CDS AWJ20_1382 30033178 complement(4279949..4281625) A 1 NC_031672.1 GTPase-activating protein for yeast Rab family members; Ypt1p is the preferred in vitro substrate but also acts on Sec4p, Ypt31p and Ypt32p; involved in the regulation of ER to Golgi vesicle transport; GO_component: GO:0005622 - intracellular [Evidence IDA] [PMID 12189143]; GO_function: GO:0005096 - GTPase activator activity [Evidence IEA]; GO_function: GO:0005097 - Rab GTPase activator activity [Evidence IEA]; GO_function: GO:0005097 - Rab GTPase activator activity [Evidence IGI,IPI,ISS] [PMID 12189143]; GO_process: GO:0043547 - positive regulation of GTPase activity [Evidence IEA]; GO_process: GO:0032851 - positive regulation of Rab GTPase activity [Evidence IEA]; GO_process: GO:0032313 - regulation of Rab GTPase activity [Evidence IEA]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IGI] [PMID 12189143]; Gyp8p 4281625 GYP8 30033178 GYP8 Sugiyamaella lignohabitans Gyp8p XP_018735579.1 4279949 R 796027 CDS AWJ20_1383 30033179 4281952..4282944 A 1 NC_031672.1 cyclin-dependent protein kinase-activating kinase CAK1 4282944 CAK1 30033179 CAK1 Sugiyamaella lignohabitans cyclin-dependent protein kinase-activating kinase CAK1 XP_018735580.1 4281952 D 796027 CDS AWJ20_1384 30033180 complement(4283204..4284466) A 1 NC_031672.1 uncharacterized protein 4284466 30033180 AWJ20_1384 Sugiyamaella lignohabitans uncharacterized protein XP_018735581.1 4283204 R 796027 CDS AWJ20_1385 30033181 4284728..4285039 A 1 NC_031672.1 Protein GON7 4285039 30033181 AWJ20_1385 Sugiyamaella lignohabitans Protein GON7 XP_018735582.1 4284728 D 796027 CDS AWJ20_1386 30033182 complement(4287636..4290539) A 1 NC_031672.1 Beta subunit of heterooctameric phosphofructokinase; involved in glycolysis; indispensable for anaerobic growth; activated by fructose-2,6-bisphosphate and AMP; mutation inhibits glucose induction of cell cycle-related genes; GO_component: GO:0005945 - 6-phosphofructokinase complex [Evidence IEA]; GO_component: GO:0005945 - 6-phosphofructokinase complex [Evidence IMP] [PMID 3007939]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16962558]; GO_function: GO:0003872 - 6-phosphofructokinase activity [Evidence IEA,IEA]; GO_function: GO:0003872 - 6-phosphofructokinase activity [Evidence IMP] [PMID 3007939]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 21124907]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0046835 - carbohydrate phosphorylation [Evidence IEA,IEA]; GO_process: GO:0006002 - fructose 6-phosphate metabolic process [Evidence IEA]; GO_process: GO:0006096 - glycolytic process [Evidence IEA,IEA,IEA]; GO_process: GO:0006096 - glycolytic process [Evidence IDA] [PMID 3000145]; GO_process: GO:0006096 - glycolytic process [Evidence IMP] [PMID 3007939]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; GO_process: GO:0015992 - proton transport [Evidence IGI] [PMID 18632794]; 6-phosphofructokinase subunit beta 4290539 PFK2 30033182 PFK2 Sugiyamaella lignohabitans 6-phosphofructokinase subunit beta XP_018735583.1 4287636 R 796027 CDS AWJ20_1387 30033183 4293423..4294772 A 1 NC_031672.1 Ornithine decarboxylase; catalyzes the first step in polyamine biosynthesis; degraded in a proteasome-dependent manner in the presence of excess polyamines; deletion decreases lifespan, and increases necrotic cell death and ROS generation; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0016831 - carboxy-lyase activity [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016829 - lyase activity [Evidence IEA]; GO_function: GO:0004586 - ornithine decarboxylase activity [Evidence IEA]; GO_function: GO:0004586 - ornithine decarboxylase activity [Evidence IDA] [PMID 2681188]; GO_process: GO:0015940 - pantothenate biosynthetic process [Evidence IMP] [PMID 11154694]; GO_process: GO:0006596 - polyamine biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0009446 - putrescine biosynthetic process [Evidence IMP] [PMID 7929015]; GO_process: GO:0033387 - putrescine biosynthetic process from ornithine [Evidence IEA]; ornithine decarboxylase SPE1 4294772 SPE1 30033183 SPE1 Sugiyamaella lignohabitans ornithine decarboxylase SPE1 XP_018735584.1 4293423 D 796027 CDS AWJ20_1388 30033184 4295474..4296610 A 1 NC_031672.1 uncharacterized protein 4296610 30033184 AWJ20_1388 Sugiyamaella lignohabitans uncharacterized protein XP_018735585.1 4295474 D 796027 CDS AWJ20_1389 30033185 4297380..4298501 A 1 NC_031672.1 uncharacterized protein 4298501 30033185 AWJ20_1389 Sugiyamaella lignohabitans uncharacterized protein XP_018735586.1 4297380 D 796027 CDS AWJ20_1391 30033188 complement(4299074..4300150) A 1 NC_031672.1 aromatic ring-opening dioxygenase (predicted) 4300150 30033188 AWJ20_1391 Sugiyamaella lignohabitans aromatic ring-opening dioxygenase (predicted) XP_018735587.1 4299074 R 796027 CDS AWJ20_1392 30033189 4300950..4301972 A 1 NC_031672.1 uncharacterized protein 4301972 30033189 AWJ20_1392 Sugiyamaella lignohabitans uncharacterized protein XP_018735588.1 4300950 D 796027 CDS AWJ20_1393 30033190 complement(4302048..4303703) A 1 NC_031672.1 uncharacterized protein 4303703 30033190 AWJ20_1393 Sugiyamaella lignohabitans uncharacterized protein XP_018735589.1 4302048 R 796027 CDS AWJ20_1394 30033191 4304048..4304875 A 1 NC_031672.1 uncharacterized protein 4304875 30033191 AWJ20_1394 Sugiyamaella lignohabitans uncharacterized protein XP_018735590.1 4304048 D 796027 CDS AWJ20_1395 30033192 4305250..4305699 A 1 NC_031672.1 uncharacterized protein 4305699 30033192 AWJ20_1395 Sugiyamaella lignohabitans uncharacterized protein XP_018735591.1 4305250 D 796027 CDS AWJ20_1396 30033193 complement(4305832..4307976) A 1 NC_031672.1 uncharacterized protein 4307976 30033193 AWJ20_1396 Sugiyamaella lignohabitans uncharacterized protein XP_018735592.1 4305832 R 796027 CDS AWJ20_1397 30033194 4310964..4312625 A 1 NC_031672.1 arylsulfatase (predicted) 4312625 30033194 AWJ20_1397 Sugiyamaella lignohabitans arylsulfatase (predicted) XP_018735593.1 4310964 D 796027 CDS AWJ20_1398 30033195 4312936..4315053 A 1 NC_031672.1 Biotin:apoprotein ligase; covalently modifies proteins with the addition of biotin, required for acetyl-CoA carboxylase (Acc1p) holoenzyme formation; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0004077 - biotin-[acetyl-CoA-carboxylase] ligase activity [Evidence IEA,IEA]; GO_function: GO:0004077 - biotin-[acetyl-CoA-carboxylase] ligase activity [Evidence IMP] [PMID 6108218]; GO_function: GO:0004078 - biotin-[methylcrotonoyl-CoA-carboxylase] ligase activity [Evidence IEA]; GO_function: GO:0004079 - biotin-[methylmalonyl-CoA-carboxytransferase] ligase activity [Evidence IEA]; GO_function: GO:0004080 - biotin-[propionyl-CoA-carboxylase (ATP-hydrolyzing)] ligase activity [Evidence IEA]; GO_function: GO:0071734 - biotin-[pyruvate-carboxylase] ligase activity [Evidence IDA] [PMID 10551847]; GO_function: GO:0003824 - catalytic activity [Evidence IEA,IEA]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006464 - cellular protein modification process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0009305 - protein biotinylation [Evidence IDA] [PMID 10551847]; GO_process: GO:0009305 - protein biotinylation [Evidence IMP] [PMID 6108218]; biotin--[acetyl-CoA-carboxylase] ligase BPL1 4315053 BPL1 30033195 BPL1 Sugiyamaella lignohabitans biotin--[acetyl-CoA-carboxylase] ligase BPL1 XP_018735594.1 4312936 D 796027 CDS AWJ20_1399 30033196 complement(4315191..4316120) A 1 NC_031672.1 uncharacterized protein 4316120 30033196 AWJ20_1399 Sugiyamaella lignohabitans uncharacterized protein XP_018735595.1 4315191 R 796027 CDS AWJ20_1400 30033199 4317184..4320285 A 1 NC_031672.1 Subunit of the condensin complex; required for establishment and maintenance of chromosome condensation, chromosome segregation, chromatin binding of condensin, tRNA gene clustering at the nucleolus, and silencing at the mating type locus; required for replication slow zone (RSZ) breakage following Mec1p inactivation; GO_component: GO:0005694 - chromosome [Evidence IEA,IEA]; GO_component: GO:0000799 - nuclear condensin complex [Evidence IDA] [PMID 10811823]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 11854418]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_function: GO:0003682 - chromatin binding [Evidence IGI] [PMID 11864994]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0030466 - chromatin silencing at silent mating-type cassette [Evidence IMP] [PMID 11854418]; GO_process: GO:0030261 - chromosome condensation [Evidence IEA,IEA]; GO_process: GO:0043007 - maintenance of rDNA [Evidence IMP] [PMID 17203076]; GO_process: GO:0010032 - meiotic chromosome condensation [Evidence IMP] [PMID 14662740]; GO_process: GO:0051307 - meiotic chromosome separation [Evidence IMP] [PMID 14662740]; GO_process: GO:0007076 - mitotic chromosome condensation [Evidence IEA]; GO_process: GO:0007076 - mitotic chromosome condensation [Evidence IPI] [PMID 10811823]; GO_process: GO:0007076 - mitotic chromosome condensation [Evidence IMP] [PMID 11854418]; GO_process: GO:0007076 - mitotic chromosome condensation [Evidence IMP] [PMID 11864994]; GO_process: GO:0007067 - mitotic nuclear division [Evidence IEA,IEA]; GO_process: GO:0000070 - mitotic sister chromatid segregation [Evidence IMP] [PMID 11854418]; GO_process: GO:0000070 - mitotic sister chromatid segregation [Evidence IMP] [PMID 11864994]; GO_process: GO:0007130 - synaptonemal complex assembly [Evidence IMP] [PMID 14662740]; GO_process: GO:0070058 - tRNA gene clustering [Evidence IMP] [PMID 18708579]; Ycs4p 4320285 YCS4 30033199 YCS4 Sugiyamaella lignohabitans Ycs4p XP_018735596.1 4317184 D 796027 CDS AWJ20_1401 30033200 4324385..4325026 A 1 NC_031672.1 Conserved nuclear RNA-binding protein; specifically binds to transcribed chromatin in a THO- and RNA-dependent manner, genetically interacts with shuttling hnRNP NAB2; overproduction suppresses transcriptional defect caused by hpr1 mutation; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003723 - RNA binding [Evidence IDA] [PMID 16738307]; GO_function: GO:0003682 - chromatin binding [Evidence IDA] [PMID 16738307]; GO_function: GO:0003690 - double-stranded DNA binding [Evidence IDA] [PMID 16738307]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_process: GO:0016973 - poly(A)+ mRNA export from nucleus [Evidence IGI] [PMID 16738307]; GO_process: GO:0022618 - ribonucleoprotein complex assembly [Evidence IMP] [PMID 16738307]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IGI] [PMID 9707445]; Tho1p 4325026 THO1 30033200 THO1 Sugiyamaella lignohabitans Tho1p XP_018735597.1 4324385 D 796027 CDS AWJ20_1402 30033201 complement(4325347..4327911) A 1 NC_031672.1 uncharacterized protein 4327911 30033201 AWJ20_1402 Sugiyamaella lignohabitans uncharacterized protein XP_018735598.1 4325347 R 796027 CDS AWJ20_1403 30033202 4330438..4332909 A 1 NC_031672.1 uncharacterized protein 4332909 30033202 AWJ20_1403 Sugiyamaella lignohabitans uncharacterized protein XP_018735599.1 4330438 D 796027 CDS AWJ20_1404 30033203 complement(4333038..4334234) A 1 NC_031672.1 uncharacterized protein 4334234 30033203 AWJ20_1404 Sugiyamaella lignohabitans uncharacterized protein XP_018735600.1 4333038 R 796027 CDS AWJ20_1405 30033204 complement(4336774..4338051) A 1 NC_031672.1 uncharacterized protein 4338051 30033204 AWJ20_1405 Sugiyamaella lignohabitans uncharacterized protein XP_018735601.1 4336774 R 796027 CDS AWJ20_1406 30033205 complement(4342857..4345364) A 1 NC_031672.1 chromatin-binding protein BDF1 4345364 BDF1 30033205 BDF1 Sugiyamaella lignohabitans chromatin-binding protein BDF1 XP_018735602.1 4342857 R 796027 CDS AWJ20_1407 30033206 4347346..4348356 A 1 NC_031672.1 uncharacterized protein 4348356 30033206 AWJ20_1407 Sugiyamaella lignohabitans uncharacterized protein XP_018735603.1 4347346 D 796027 CDS AWJ20_1408 30033207 4348715..4349518 A 1 NC_031672.1 Mitochondrial ribosomal protein of the large subunit; has similarity to E. coli L4 ribosomal protein and human mitoribosomal MRP-L4 protein; essential for viability, unlike most other mitoribosomal proteins; GO_component: GO:0005762 - mitochondrial large ribosomal subunit [Evidence IDA] [PMID 9151978]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA,IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IDA] [PMID 9151978]; GO_process: GO:0032543 - mitochondrial translation [Evidence IC] [PMID 9151978]; GO_process: GO:0006412 - translation [Evidence IEA]; mitochondrial 54S ribosomal protein YmL6 4349518 YML6 30033207 YML6 Sugiyamaella lignohabitans mitochondrial 54S ribosomal protein YmL6 XP_018735604.1 4348715 D 796027 CDS AWJ20_1409 30033208 complement(4350980..4352281) A 1 NC_031672.1 Homeobox transcriptional repressor; binds to Mcm1p and to early cell cycle boxes (ECBs) in the promoters of cell cycle-regulated genes expressed in M/G1 phase; expression is cell cycle-regulated; potential Cdc28p substrate; relocalizes from nucleus to cytoplasm upon DNA replication stress; YOX1 has a paralog, YHP1, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0000790 - nuclear chromatin [Evidence IDA] [PMID 12464632]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 15282802]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0000977 - RNA polymerase II regulatory region sequence-specific DNA binding [Evidence IDA,IMP] [PMID 12464633]; GO_function: GO:0000977 - RNA polymerase II regulatory region sequence-specific DNA binding [Evidence IDA] [PMID 20385087]; GO_function: GO:0001191 - RNA polymerase II transcription factor binding transcription factor activity involved in negative regulation of transcription [Evidence IPI] [PMID 12464633]; GO_function: GO:0001191 - RNA polymerase II transcription factor binding transcription factor activity involved in negative regulation of transcription [Evidence IMP,IPI] [PMID 20385087]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19111667]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19158363]; GO_function: GO:0003700 - sequence-specific DNA binding transcription factor activity [Evidence IEA]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0071930 - negative regulation of transcription involved in G1/S transition of mitotic cell cycle [Evidence IGI,IMP] [PMID 12464633]; GO_process: GO:0071930 - negative regulation of transcription involved in G1/S transition of mitotic cell cycle [Evidence IMP] [PMID 17314407]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA,IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Yox1p 4352281 YOX1 30033208 YOX1 Sugiyamaella lignohabitans Yox1p XP_018735605.1 4350980 R 796027 CDS AWJ20_1410 30033210 complement(4355324..4356871) A 1 NC_031672.1 Steryl ester hydrolase; catalyzes steryl ester hydrolysis at the plasma membrane; involved in sterol metabolism; YEH2 has a paralog, YEH1, that arose from the whole genome duplication; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IDA] [PMID 15713625]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 15632184]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0004771 - sterol esterase activity [Evidence IEA]; GO_function: GO:0004771 - sterol esterase activity [Evidence IDA,IMP] [PMID 15632184]; GO_function: GO:0004771 - sterol esterase activity [Evidence IDA] [PMID 15713625]; GO_process: GO:0000032 - cell wall mannoprotein biosynthetic process [Evidence IMP] [PMID 14587103]; GO_process: GO:0016042 - lipid catabolic process [Evidence IEA]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA,IEA]; GO_process: GO:0016125 - sterol metabolic process [Evidence IMP] [PMID 15632184]; GO_process: GO:0016125 - sterol metabolic process [Evidence IMP] [PMID 15713625]; Yeh2p 4356871 YEH2 30033210 YEH2 Sugiyamaella lignohabitans Yeh2p XP_018735606.1 4355324 R 796027 CDS AWJ20_1411 30033211 4359246..4359512 A 1 NC_031672.1 Adenylylsulfate kinase; required for sulfate assimilation and involved in methionine metabolism; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004020 - adenylylsulfate kinase activity [Evidence IEA,IEA]; GO_function: GO:0004020 - adenylylsulfate kinase activity [Evidence IMP] [PMID 197388]; GO_function: GO:0004020 - adenylylsulfate kinase activity [Evidence IDA] [PMID 3019265]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0019344 - cysteine biosynthetic process [Evidence IEA]; GO_process: GO:0070814 - hydrogen sulfide biosynthetic process [Evidence IEA]; GO_process: GO:0009086 - methionine biosynthetic process [Evidence IEA]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; GO_process: GO:0000103 - sulfate assimilation [Evidence IEA]; GO_process: GO:0019379 - sulfate assimilation, phosphoadenylyl sulfate reduction by phosphoadenylyl-sulfate reductase (thioredoxin) [Evidence IMP] [PMID 197388]; GO_process: GO:0000096 - sulfur amino acid metabolic process [Evidence IMP] [PMID 1101032]; adenylyl-sulfate kinase 4359512 MET14 30033211 MET14 Sugiyamaella lignohabitans adenylyl-sulfate kinase XP_018735607.1 4359246 D 796027 CDS AWJ20_1412 30033212 complement(4359793..4360224) A 1 NC_031672.1 Class E Vps protein of the ESCRT-III complex; required for sorting of integral membrane proteins into lumenal vesicles of multivesicular bodies, and for delivery of newly synthesized vacuolar enzymes to the vacuole, involved in endocytosis; GO_component: GO:0000815 - ESCRT III complex [Evidence IDA] [PMID 12194857]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 12194857]; GO_component: GO:0005768 - endosome [Evidence IEA]; GO_component: GO:0010008 - endosome membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0070676 - intralumenal vesicle formation [Evidence IMP] [PMID 19234443]; GO_process: GO:0045324 - late endosome to vacuole transport [Evidence IPI] [PMID 12194857]; GO_process: GO:0045053 - protein retention in Golgi apparatus [Evidence IMP] [PMID 8649377]; GO_process: GO:0015031 - protein transport [Evidence IEA,IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0043162 - ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway [Evidence IC] [PMID 15086794]; ESCRT-III subunit protein DID4 4360224 DID4 30033212 DID4 Sugiyamaella lignohabitans ESCRT-III subunit protein DID4 XP_018735608.1 4359793 R 796027 CDS AWJ20_1413 30033213 4364485..4365633 A 1 NC_031672.1 serine/threonine protein kinase RIM11 4365633 RIM11 30033213 RIM11 Sugiyamaella lignohabitans serine/threonine protein kinase RIM11 XP_018735609.1 4364485 D 796027 CDS AWJ20_1414 30033214 complement(4365874..4366395) A 1 NC_031672.1 Vacuolar membrane hypothetical protein; involved in vacuolar protein sorting; also detected in the mitochondria; GO_component: GO:0034424 - Vps55/Vps68 complex [Evidence IDA,IPI] [PMID 18216282]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 14562095]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 23708375]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0032511 - late endosome to vacuole transport via multivesicular body sorting pathway [Evidence IMP] [PMID 18216282]; GO_process: GO:0006623 - protein targeting to vacuole [Evidence IMP] [PMID 12134085]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Vps68p 4366395 VPS68 30033214 VPS68 Sugiyamaella lignohabitans Vps68p XP_018735610.1 4365874 R 796027 CDS AWJ20_1415 30033215 4369834..4371843 A 1 NC_031672.1 one of two likely peroxisomal copper amine oxidase genes; similar to A.niger AO-I; allele of CaO19.10662; putative peroxisomal copper amine oxidase 4371843 AMO2 30033215 AMO2 Sugiyamaella lignohabitans putative peroxisomal copper amine oxidase XP_018735611.1 4369834 D 796027 CDS AWJ20_1416 30033216 4373358..4374101 A 1 NC_031672.1 uncharacterized protein 4374101 30033216 AWJ20_1416 Sugiyamaella lignohabitans uncharacterized protein XP_018735612.1 4373358 D 796027 CDS AWJ20_1417 30033217 4376214..4377440 A 1 NC_031672.1 uncharacterized protein 4377440 30033217 AWJ20_1417 Sugiyamaella lignohabitans uncharacterized protein XP_018735613.1 4376214 D 796027 CDS AWJ20_1418 30033218 4378139..4379305 A 1 NC_031672.1 Ribosomal 60S subunit protein L3; homologous to mammalian ribosomal protein L3 and bacterial L3; plays an important role in function of eIF5B in stimulating 3' end processing of 18S rRNA in context of 80S ribosomes that have not yet engaged in translation; involved in replication and maintenance of killer double stranded RNA virus; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0022625 - cytosolic large ribosomal subunit [Evidence IDA] [PMID 11983894]; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 23212245]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA,IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IC] [PMID 11983894]; GO_process: GO:0002181 - cytoplasmic translation [Evidence IC] [PMID 11983894]; GO_process: GO:0000027 - ribosomal large subunit assembly [Evidence IMP] [PMID 3537704]; GO_process: GO:0006412 - translation [Evidence IEA]; ribosomal 60S subunit protein L3 4379305 RPL3 30033218 RPL3 Sugiyamaella lignohabitans ribosomal 60S subunit protein L3 XP_018735614.1 4378139 D 796027 CDS AWJ20_1419 30033219 4380632..4381675 A 1 NC_031672.1 uncharacterized protein 4381675 30033219 AWJ20_1419 Sugiyamaella lignohabitans uncharacterized protein XP_018735615.1 4380632 D 796027 CDS AWJ20_1420 30033221 complement(4383089..4384429) A 1 NC_031672.1 Chitin transglycosylase; functions in the transfer of chitin to beta(1-6) and beta(1-3) glucans in the cell wall; similar and functionally redundant to Utr2; localizes to sites of polarized growth; expression induced by cell wall stress; GO_component: GO:0031225 - anchored component of membrane [Evidence IEA]; GO_component: GO:0005618 - cell wall [Evidence IEA,IEA,IEA]; GO_component: GO:0005576 - extracellular region [Evidence IEA]; GO_component: GO:0009277 - fungal-type cell wall [Evidence IDA] [PMID 10757808]; GO_component: GO:0009277 - fungal-type cell wall [Evidence IDA] [PMID 15781460]; GO_component: GO:0000131 - incipient cellular bud site [Evidence IDA] [PMID 10757808]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016798 - hydrolase activity, acting on glycosyl bonds [Evidence IEA,IEA]; GO_function: GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]; GO_function: GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IGI,IMP] [PMID 18694928]; GO_function: GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IDA] [PMID 23919454]; GO_process: GO:0005975 - carbohydrate metabolic process [Evidence IEA]; GO_process: GO:0006037 - cell wall chitin metabolic process [Evidence IGI,IMP] [PMID 18694928]; GO_process: GO:0071555 - cell wall organization [Evidence IEA]; GO_process: GO:0031505 - fungal-type cell wall organization [Evidence IGI,IMP] [PMID 18694928]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; Crh1p 4384429 CRH1 30033221 CRH1 Sugiyamaella lignohabitans Crh1p XP_018735616.1 4383089 R 796027 CDS AWJ20_1421 30033222 complement(4384741..4386822) A 1 NC_031672.1 Glycerol 3-phosphate/dihydroxyacetone phosphate sn-1 acyltransferase; dual substrate-specific acyltransferase of the glycerolipid biosynthesis pathway; prefers 16-carbon fatty acids; similar to Gpt2p; gene is constitutively transcribed; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 14562095]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 19525420]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0004366 - glycerol-3-phosphate O-acyltransferase activity [Evidence IEA]; GO_function: GO:0004366 - glycerol-3-phosphate O-acyltransferase activity [Evidence IDA,IGI,IMP] [PMID 11544256]; GO_function: GO:0016287 - glycerone-phosphate O-acyltransferase activity [Evidence IEA]; GO_function: GO:0016287 - glycerone-phosphate O-acyltransferase activity [Evidence IDA] [PMID 11544256]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016746 - transferase activity, transferring acyl groups [Evidence IEA,IEA]; GO_process: GO:0016024 - CDP-diacylglycerol biosynthetic process [Evidence IEA]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0008654 - phospholipid biosynthetic process [Evidence IEA]; GO_process: GO:0008654 - phospholipid biosynthetic process [Evidence IGI,IMP] [PMID 11544256]; bifunctional glycerol-3-phosphate/glycerone-phosphate O-acyltransferase SCT1 4386822 SCT1 30033222 SCT1 Sugiyamaella lignohabitans bifunctional glycerol-3-phosphate/glycerone-phosphate O-acyltransferase SCT1 XP_018735617.1 4384741 R 796027 CDS AWJ20_1422 30033223 4392245..4393660 A 1 NC_031672.1 Protein containing GATA family zinc finger motifs; similar to Gln3p and Dal80p; expression repressed by leucine; GO_component: GO:0005634 - nucleus [Evidence ISA] [PMID 10392447]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO_function: GO:0000981 - sequence-specific DNA binding RNA polymerase II transcription factor activity [Evidence ISA] [PMID 10392447]; GO_function: GO:0003700 - sequence-specific DNA binding transcription factor activity [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence ISA] [PMID 10392447]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; Gat2p 4393660 GAT2 30033223 GAT2 Sugiyamaella lignohabitans Gat2p XP_018735618.1 4392245 D 796027 CDS AWJ20_1423 30033224 4401492..4402403 A 1 NC_031672.1 Protein involved in control of glucose-regulated gene expression; interacts with kinase Snf1p, glucose sensors Snf3p and Rgt2p, TATA-binding Spt15p; regulator of transcription factor Rgt1p; interactions with Pma1p appear to propagate [GAR+]; STD1 has a paralog, MTH1, that arose from the whole genome duplication; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 10373505]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 10373505]; GO_function: GO:0030295 - protein kinase activator activity [Evidence IGI,IPI] [PMID 12618390]; GO_process: GO:0006006 - glucose metabolic process [Evidence IMP] [PMID 10373505]; GO_process: GO:0071590 - nicotinamide riboside biosynthetic process [Evidence IGI,IMP] [PMID 19846558]; GO_process: GO:0071592 - nicotinic acid riboside biosynthetic process [Evidence IGI,IMP] [PMID 19846558]; GO_process: GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence IMP,IPI] [PMID 7667094]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0009651 - response to salt stress [Evidence IMP] [PMID 9725828]; GO_process: GO:0007165 - signal transduction [Evidence IMP] [PMID 10373505]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Std1p 4402403 STD1 30033224 STD1 Sugiyamaella lignohabitans Std1p XP_018735619.1 4401492 D 796027 CDS AWJ20_1424 30033225 4406964..4408550 A 1 NC_031672.1 Cytoplasmic ATP-dependent RNA helicase of the DEAD-box family; involved in mRNA export from the nucleus, remodeling messenger ribonucleoprotein particles (mRNPs), with ATPase activity stimulated by Gle1p, IP6 and Nup159p; involved in translation termination along with Sup45p (eRF1); role in the cellular response to heat stress; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 19198597]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 10610322]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 15280434]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 9564048]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0031965 - nuclear membrane [Evidence IEA]; GO_component: GO:0005643 - nuclear pore [Evidence IEA,IEA]; GO_component: GO:0005643 - nuclear pore [Evidence IPI] [PMID 10428971]; GO_component: GO:0044614 - nuclear pore cytoplasmic filaments [Evidence IDA] [PMID 10610322]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 15280434]; GO_component: GO:0005844 - polysome [Evidence IDA] [PMID 17272721]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 23212245]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0008026 - ATP-dependent helicase activity [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003724 - RNA helicase activity [Evidence IDA,ISS] [PMID 9564047]; GO_function: GO:0008186 - RNA-dependent ATPase activity [Evidence IDA] [PMID 19805289]; GO_function: GO:0004386 - helicase activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0000822 - inositol hexakisphosphate binding [Evidence IDA] [PMID 16783363]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0006406 - mRNA export from nucleus [Evidence IGI,IMP] [PMID 9564048]; GO_process: GO:0051028 - mRNA transport [Evidence IEA]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006415 - translational termination [Evidence IGI,IPI] [PMID 17272721]; GO_process: GO:0006810 - transport [Evidence IEA]; ATP-dependent RNA helicase DBP5 4408550 DBP5 30033225 DBP5 Sugiyamaella lignohabitans ATP-dependent RNA helicase DBP5 XP_018735620.1 4406964 D 796027 CDS AWJ20_1425 30033226 complement(4408782..4410008) A 1 NC_031672.1 Ino80 complex subunit Iec1 4410008 iec1 30033226 iec1 Sugiyamaella lignohabitans Ino80 complex subunit Iec1 XP_018735621.1 4408782 R 796027 CDS AWJ20_1426 30033227 4410642..4412120 A 1 NC_031672.1 Alpha subunit of cytoplasmic phenylalanyl-tRNA synthetase; forms a tetramer with Frs1p to form active enzyme; evolutionarily distant from mitochondrial phenylalanyl-tRNA synthetase based on protein sequence, but substrate binding is similar; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0009328 - phenylalanine-tRNA ligase complex [Evidence IDA] [PMID 3049607]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004812 - aminoacyl-tRNA ligase activity [Evidence IEA,IEA]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_function: GO:0004826 - phenylalanine-tRNA ligase activity [Evidence IEA,IEA]; GO_function: GO:0004826 - phenylalanine-tRNA ligase activity [Evidence IDA] [PMID 16162501]; GO_function: GO:0004826 - phenylalanine-tRNA ligase activity [Evidence IDA] [PMID 166841]; GO_function: GO:0000049 - tRNA binding [Evidence IEA]; GO_process: GO:0006432 - phenylalanyl-tRNA aminoacylation [Evidence IEA]; GO_process: GO:0006432 - phenylalanyl-tRNA aminoacylation [Evidence IDA] [PMID 16162501]; GO_process: GO:0006432 - phenylalanyl-tRNA aminoacylation [Evidence IDA] [PMID 166841]; GO_process: GO:0043039 - tRNA aminoacylation [Evidence IEA]; GO_process: GO:0006418 - tRNA aminoacylation for protein translation [Evidence IEA]; GO_process: GO:0006412 - translation [Evidence IEA]; phenylalanine--tRNA ligase subunit alpha 4412120 FRS2 30033227 FRS2 Sugiyamaella lignohabitans phenylalanine--tRNA ligase subunit alpha XP_018735622.1 4410642 D 796027 CDS AWJ20_1427 30033228 4416699..4417931 A 1 NC_031672.1 Subunit of the G protein involved in pheromone response; GTP-binding alpha subunit of the heterotrimeric G protein; negatively regulates the mating pathway by sequestering G(beta)gamma and by triggering an adaptive response; activates Vps34p at the endosome; protein abundance increases in response to DNA replication stress; GO_component: GO:0005768 - endosome [Evidence IEA]; GO_component: GO:0005768 - endosome [Evidence IDA] [PMID 16839886]; GO_component: GO:0010008 - endosome membrane [Evidence IEA]; GO_component: GO:0031234 - extrinsic component of cytoplasmic side of plasma membrane [Evidence IBA]; GO_component: GO:0005834 - heterotrimeric G-protein complex [Evidence IDA,IPI] [PMID 11394869]; GO_component: GO:0005834 - heterotrimeric G-protein complex [Evidence IMP] [PMID 2105453]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 8756677]; GO_function: GO:0031683 - G-protein beta/gamma-subunit complex binding [Evidence IBA,IEA]; GO_function: GO:0001664 - G-protein coupled receptor binding [Evidence IBA,IEA]; GO_function: GO:0005525 - GTP binding [Evidence IEA,IEA]; GO_function: GO:0003924 - GTPase activity [Evidence IEA]; GO_function: GO:0003924 - GTPase activity [Evidence IDA] [PMID 11394869]; GO_function: GO:0003924 - GTPase activity [Evidence IMP] [PMID 1900495]; GO_function: GO:0019001 - guanyl nucleotide binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0004871 - signal transducer activity [Evidence IBA,IEA,IEA]; GO_process: GO:0007186 - G-protein coupled receptor signaling pathway [Evidence IEA]; GO_process: GO:0006184 - GTP catabolic process [Evidence IEA]; GO_process: GO:0000754 - adaptation of signaling pathway by response to pheromone involved in conjugation with cellular fusion [Evidence IMP] [PMID 12556475]; GO_process: GO:0000754 - adaptation of signaling pathway by response to pheromone involved in conjugation with cellular fusion [Evidence IMP] [PMID 2105453]; GO_process: GO:0007189 - adenylate cyclase-activating G-protein coupled receptor signaling pathway [Evidence IBA,IEA]; GO_process: GO:0031684 - heterotrimeric G-protein complex cycle [Evidence IMP] [PMID 2107073]; GO_process: GO:0048017 - inositol lipid-mediated signaling [Evidence IMP] [PMID 16839886]; GO_process: GO:0000742 - karyogamy involved in conjugation with cellular fusion [Evidence IMP] [PMID 19386762]; GO_process: GO:0000743 - nuclear migration involved in conjugation with cellular fusion [Evidence IMP] [PMID 19386762]; GO_process: GO:0000750 - pheromone-dependent signal transduction involved in conjugation with cellular fusion [Evidence IMP] [PMID 3113739]; GO_process: GO:0071701 - regulation of MAPK export from nucleus [Evidence IMP] [PMID 12556475]; GO_process: GO:0019236 - response to pheromone [Evidence IEA]; GO_process: GO:0007165 - signal transduction [Evidence IEA,IEA]; guanine nucleotide-binding protein subunit alpha 4417931 GPA1 30033228 GPA1 Sugiyamaella lignohabitans guanine nucleotide-binding protein subunit alpha XP_018735623.1 4416699 D 796027 CDS AWJ20_1429 30033230 complement(4423090..4425216) A 1 NC_031672.1 Subunit of the endosomal Vps27p-Hse1p complex; complex is required for sorting of ubiquitinated membrane proteins into intralumenal vesicles prior to vacuolar degradation, as well as for recycling of Golgi proteins and formation of lumenal membranes; GO_component: GO:0033565 - ESCRT-0 complex [Evidence IPI] [PMID 12055639]; GO_component: GO:0005768 - endosome [Evidence IEA]; GO_component: GO:0005768 - endosome [Evidence IDA] [PMID 12055639]; GO_component: GO:0010008 - endosome membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0043130 - ubiquitin binding [Evidence IDA] [PMID 12055639]; GO_function: GO:0043130 - ubiquitin binding [Evidence IDA] [PMID 20150893]; GO_process: GO:0006886 - intracellular protein transport [Evidence IEA]; GO_process: GO:0045324 - late endosome to vacuole transport [Evidence IMP] [PMID 12055639]; GO_process: GO:0006623 - protein targeting to vacuole [Evidence IMP,IPI] [PMID 12055639]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; ESCRT-0 subunit protein HSE1 4425216 HSE1 30033230 HSE1 Sugiyamaella lignohabitans ESCRT-0 subunit protein HSE1 XP_018735624.1 4423090 R 796027 CDS AWJ20_1430 30033232 4426355..4427575 A 1 NC_031672.1 Ceramide synthase component; involved in synthesis of ceramide from C26(acyl)-coenzyme A and dihydrosphingosine or phytosphingosine, functionally equivalent to Lac1p; forms ER foci upon DNA replication stress; homolog of human CERS2, a tumor metastasis suppressor gene whose silencing enahnces invasion/metastasis of prostate cancer cells; LAG1 has a paralog, LAC1, that arose from the whole genome duplication; GO_component: GO:0061576 - acyl-CoA ceramide synthase complex [Evidence IDA] [PMID 15692566]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 11914276]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 14562095]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 22842922]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0050291 - sphingosine N-acyltransferase activity [Evidence IEA]; GO_function: GO:0050291 - sphingosine N-acyltransferase activity [Evidence IMP] [PMID 11387200]; GO_function: GO:0050291 - sphingosine N-acyltransferase activity [Evidence IMP] [PMID 11694577]; GO_function: GO:0050291 - sphingosine N-acyltransferase activity [Evidence IDA] [PMID 15692566]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0046513 - ceramide biosynthetic process [Evidence IMP] [PMID 11694577]; GO_process: GO:0046513 - ceramide biosynthetic process [Evidence IDA] [PMID 15692566]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0001302 - replicative cell aging [Evidence IEP,IMP] [PMID 8195187]; sphingosine N-acyltransferase LAG1 4427575 LAG1 30033232 LAG1 Sugiyamaella lignohabitans sphingosine N-acyltransferase LAG1 XP_018735625.1 4426355 D 796027 CDS AWJ20_1431 30033233 complement(4428328..4429794) A 1 NC_031672.1 Mitochondrial ribosomal protein of the small subunit; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0005763 - mitochondrial small ribosomal subunit [Evidence IPI] [PMID 11278769]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA,IEA]; GO_component: GO:0015935 - small ribosomal subunit [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IPI] [PMID 11278769]; GO_function: GO:0000049 - tRNA binding [Evidence ISS] [PMID 9445368]; GO_process: GO:0032543 - mitochondrial translation [Evidence IC] [PMID 11278769]; GO_process: GO:0006412 - translation [Evidence IEA]; mitochondrial 37S ribosomal protein MRP4 4429794 MRP4 30033233 MRP4 Sugiyamaella lignohabitans mitochondrial 37S ribosomal protein MRP4 XP_018735626.1 4428328 R 796027 CDS AWJ20_1432 30033234 complement(4430273..4433728) A 1 NC_031672.1 mitogen-activated protein kinase kinase kinase kinase STE20 4433728 STE20 30033234 STE20 Sugiyamaella lignohabitans mitogen-activated protein kinase kinase kinase kinase STE20 XP_018735627.1 4430273 R 796027 CDS AWJ20_1433 30033235 complement(4438514..4441126) A 1 NC_031672.1 Negative regulator of transcription elongation; contains a TFIIS-like domain that associates with chromatin and a PHD domain that interacts with H3K4me3; multicopy suppressor of temperature-sensitive ess1 mutations, binds RNA polymerase II large subunit; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IC] [PMID 14704159]; GO_function: GO:0003682 - chromatin binding [Evidence IDA] [PMID 24003114]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0035064 - methylated histone binding [Evidence IDA] [PMID 17142463]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0000122 - negative regulation of transcription from RNA polymerase II promoter [Evidence IGI,IMP] [PMID 14704159]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA,IEA]; Bye1p 4441126 BYE1 30033235 BYE1 Sugiyamaella lignohabitans Bye1p XP_018735628.1 4438514 R 796027 CDS AWJ20_1434 30033236 4442851..4443588 A 1 NC_031672.1 Alpha-tubulin folding protein; similar to mammalian cofactor B; Alf1p-GFP localizes to cytoplasmic microtubules; required for the folding of alpha-tubulin and may play an additional role in microtubule maintenance; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA,IEA]; GO_component: GO:0005874 - microtubule [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11914276]; GO_function: GO:0043014 - alpha-tubulin binding [Evidence IPI] [PMID 9885248]; GO_function: GO:0008017 - microtubule binding [Evidence IPI] [PMID 9885248]; GO_process: GO:0007023 - post-chaperonin tubulin folding pathway [Evidence IMP,IPI] [PMID 9885248]; GO_process: GO:0006457 - protein folding [Evidence IMP,IPI] [PMID 9885248]; Alf1p 4443588 ALF1 30033236 ALF1 Sugiyamaella lignohabitans Alf1p XP_018735629.1 4442851 D 796027 CDS AWJ20_1435 30033237 complement(4443694..4445343) A 1 NC_031672.1 Protein required for structural integrity of elongating spindles; localizes to the kinetochore; interacts with histones H2A, H2B, and H4; phosphorylated by Ipl1p; orthologous to human centromere constitutive-associated network (CCAN) subunit CENP-C and fission yeast cnp3; GO_component: GO:0005694 - chromosome [Evidence IEA]; GO_component: GO:0000775 - chromosome, centromeric region [Evidence IEA,IEA]; GO_component: GO:0000780 - condensed nuclear chromosome, centromeric region [Evidence IDA] [PMID 9407032]; GO_component: GO:0000776 - kinetochore [Evidence IEA]; GO_component: GO:0000818 - nuclear MIS12/MIND complex [Evidence IDA] [PMID 14581449]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0019237 - centromeric DNA binding [Evidence IEA]; GO_function: GO:0019237 - centromeric DNA binding [Evidence IDA] [PMID 9407032]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0007059 - chromosome segregation [Evidence IGI] [PMID 22561346]; GO_process: GO:0007059 - chromosome segregation [Evidence IMP] [PMID 8408221]; GO_process: GO:0051382 - kinetochore assembly [Evidence IEA]; GO_process: GO:0007067 - mitotic nuclear division [Evidence IEA]; GO_process: GO:0030472 - mitotic spindle organization in nucleus [Evidence IMP] [PMID 8408221]; Mif2p 4445343 MIF2 30033237 MIF2 Sugiyamaella lignohabitans Mif2p XP_018735630.1 4443694 R 796027 CDS AWJ20_1436 30033238 complement(4446165..4447928) A 1 NC_031672.1 Rab escort protein; forms a complex with the Ras-like small GTPase Ypt1p that is required for the prenylation of Ypt1p by protein geranylgeranyltransferase type II (Bet2p-Bet4p); sequence similarity to mammalian choroideraemia gene; relative distribution to the nucleus increases upon DNA replication stress; GO_component: GO:0005968 - Rab-protein geranylgeranyltransferase complex [Evidence IDA] [PMID 8183917]; GO_component: GO:0005968 - Rab-protein geranylgeranyltransferase complex [Evidence IDA] [PMID 8583924]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 9202009]; GO_component: GO:0016020 - membrane [Evidence IDA] [PMID 9202009]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_function: GO:0005096 - GTPase activator activity [Evidence IEA]; GO_function: GO:0017137 - Rab GTPase binding [Evidence IMP] [PMID 12972569]; GO_function: GO:0004663 - Rab geranylgeranyltransferase activity [Evidence IDA,IMP] [PMID 8183917]; GO_process: GO:0006888 - ER to Golgi vesicle-mediated transport [Evidence IMP] [PMID 8132658]; GO_process: GO:0032858 - activation of Rab GTPase activity [Evidence IMP] [PMID 7750142]; GO_process: GO:0032858 - activation of Rab GTPase activity [Evidence IMP] [PMID 8132658]; GO_process: GO:0006886 - intracellular protein transport [Evidence IEA]; GO_process: GO:0018344 - protein geranylgeranylation [Evidence IMP] [PMID 12972569]; GO_process: GO:0006612 - protein targeting to membrane [Evidence IMP] [PMID 8183917]; Mrs6p 4447928 MRS6 30033238 MRS6 Sugiyamaella lignohabitans Mrs6p XP_018735631.1 4446165 R 796027 CDS AWJ20_1437 30033239 complement(4449433..4449915) A 1 NC_031672.1 Na+/H+ antiporter; involved in sodium and potassium efflux through the plasma membrane; required for alkali cation tolerance at acidic pH; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 17176761]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA,IEA]; GO_component: GO:0045121 - membrane raft [Evidence IDA] [PMID 19254924]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 15950597]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 9802016]; GO_function: GO:0015297 - antiporter activity [Evidence IEA]; GO_function: GO:0015491 - cation:cation antiporter activity [Evidence ISS] [PMID 8654575]; GO_function: GO:0015491 - cation:cation antiporter activity [Evidence IMP] [PMID 9802016]; GO_function: GO:0015385 - sodium:proton antiporter activity [Evidence IEA]; GO_function: GO:0015385 - sodium:proton antiporter activity [Evidence IDA] [PMID 15950597]; GO_function: GO:0015299 - solute:proton antiporter activity [Evidence IEA]; GO_process: GO:0006812 - cation transport [Evidence IEA]; GO_process: GO:0030004 - cellular monovalent inorganic cation homeostasis [Evidence IMP] [PMID 9802016]; GO_process: GO:0030007 - cellular potassium ion homeostasis [Evidence IMP] [PMID 16402204]; GO_process: GO:1902600 - hydrogen ion transmembrane transport [Evidence IEA]; GO_process: GO:0006811 - ion transport [Evidence IEA]; GO_process: GO:0006970 - response to osmotic stress [Evidence IMP] [PMID 16402204]; GO_process: GO:0035725 - sodium ion transmembrane transport [Evidence IEA]; GO_process: GO:0006814 - sodium ion transport [Evidence IEA,IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Nha1p 4449915 NHA1 30033239 NHA1 Sugiyamaella lignohabitans Nha1p XP_018735632.1 4449433 R 796027 CDS AWJ20_1438 30033240 4452421..4452771 A 1 NC_031672.1 Ribosomal 60S subunit protein L28; homologous to mammalian ribosomal protein L27A and bacterial L15; may have peptidyl transferase activity; can mutate to cycloheximide resistance; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0022625 - cytosolic large ribosomal subunit [Evidence TAS] [PMID 9559554]; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IMP] [PMID 2104804]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 23212245]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA,IEA]; GO_function: GO:0003723 - RNA binding [Evidence IDA] [PMID 6337137]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence TAS] [PMID 9559554]; GO_process: GO:0002181 - cytoplasmic translation [Evidence TAS] [PMID 9559554]; GO_process: GO:0046677 - response to antibiotic [Evidence IEA]; GO_process: GO:0046898 - response to cycloheximide [Evidence IEA]; GO_process: GO:0006412 - translation [Evidence IEA]; ribosomal 60S subunit protein L28 4452771 RPL28 30033240 RPL28 Sugiyamaella lignohabitans ribosomal 60S subunit protein L28 XP_018735633.1 4452421 D 796027 CDS AWJ20_1439 30033241 4453927..4454673 A 1 NC_031672.1 uncharacterized protein 4454673 30033241 AWJ20_1439 Sugiyamaella lignohabitans uncharacterized protein XP_018735634.1 4453927 D 796027 CDS AWJ20_1440 30033243 complement(4458778..4460907) A 1 NC_031672.1 DNA repair protein rad26 4460907 30033243 AWJ20_1440 Sugiyamaella lignohabitans DNA repair protein rad26 XP_018735635.1 4458778 R 796027 CDS AWJ20_1441 30033244 4461872..4462612 A 1 NC_031672.1 Methyltransferase for rRNA; catalyzes methylation of the pseudouridine residue 1191 of 18S rRNA; member of the SPOUT methyltransferase family; required for maturation of 18S rRNA and for 40S ribosomal subunit production independently of methyltransferase activity; forms homodimers; human ortholog is mutated in Bowen-Conradi syndrome, and the equivalent mutation in yeast affects Emg1p dimerization and localization but not its methyltransferase activity; GO_component: GO:0030686 - 90S preribosome [Evidence IDA] [PMID 12150911]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11694595]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005880 - nuclear microtubule [Evidence IDA] [PMID 11935223]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 15590835]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11694595]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11935223]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0032040 - small-subunit processome [Evidence IDA] [PMID 15590835]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0008168 - methyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0070037 - rRNA (pseudouridine) methyltransferase activity [Evidence IMP,ISO] [PMID 20972225]; GO_function: GO:0019843 - rRNA binding [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0000480 - endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 15590835]; GO_process: GO:0000447 - endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 15590835]; GO_process: GO:0000472 - endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 15590835]; GO_process: GO:0032259 - methylation [Evidence IEA]; GO_process: GO:0070475 - rRNA base methylation [Evidence IMP,ISO] [PMID 20972225]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0006364 - rRNA processing [Evidence IMP] [PMID 11694595]; GO_process: GO:0042274 - ribosomal small subunit biogenesis [Evidence IMP] [PMID 11694595]; GO_process: GO:0042274 - ribosomal small subunit biogenesis [Evidence IGI] [PMID 16721597]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; Emg1p 4462612 EMG1 30033244 EMG1 Sugiyamaella lignohabitans Emg1p XP_018735636.1 4461872 D 796027 CDS AWJ20_1442 30033245 4464738..4465931 A 1 NC_031672.1 uncharacterized protein 4465931 30033245 AWJ20_1442 Sugiyamaella lignohabitans uncharacterized protein XP_018735637.1 4464738 D 796027 CDS AWJ20_1443 30033246 complement(4466251..4466649) A 1 NC_031672.1 uncharacterized protein 4466649 30033246 AWJ20_1443 Sugiyamaella lignohabitans uncharacterized protein XP_018735638.1 4466251 R 796027 CDS AWJ20_1444 30033247 4468917..4470095 A 1 NC_031672.1 Fe(II)-dependent sulfonate/alpha-ketoglutarate dioxygenase; involved in sulfonate catabolism for use as a sulfur source; contains sequence that resembles a J domain (typified by the E. coli DnaJ protein); induced by sulphur starvation; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0051213 - dioxygenase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0000907 - sulfonate dioxygenase activity [Evidence IDA] [PMID 10482536]; GO_process: GO:0046306 - alkanesulfonate catabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0044273 - sulfur compound catabolic process [Evidence IMP] [PMID 10482536]; Jlp1p 4470095 JLP1 30033247 JLP1 Sugiyamaella lignohabitans Jlp1p XP_018735639.1 4468917 D 796027 CDS AWJ20_1445 30033248 4471186..4472781 A 1 NC_031672.1 Voltage-gated chloride channel; localized to the golgi, the endosomal system, and plasma membrane; involved in cation homeostasis; highly homologous to vertebrate voltage-gated chloride channels; modulates TBSV model (+) RNA virus replication by regulating copper metabolism; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0005794 - Golgi apparatus [Evidence IDA] [PMID 15710404]; GO_component: GO:0005797 - Golgi medial cisterna [Evidence IDA] [PMID 9614122]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA]; GO_component: GO:0034707 - chloride channel complex [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 17662057]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0005768 - endosome [Evidence IEA]; GO_component: GO:0005768 - endosome [Evidence IDA] [PMID 15710404]; GO_component: GO:0010008 - endosome membrane [Evidence IEA]; GO_component: GO:0000324 - fungal-type vacuole [Evidence IDA] [PMID 17662057]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 17662057]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0030554 - adenyl nucleotide binding [Evidence IEA]; GO_function: GO:0005254 - chloride channel activity [Evidence IEA]; GO_function: GO:0005216 - ion channel activity [Evidence IEA]; GO_function: GO:0005247 - voltage-gated chloride channel activity [Evidence IEA]; GO_function: GO:0005247 - voltage-gated chloride channel activity [Evidence IDA] [PMID 12074596]; GO_process: GO:0006878 - cellular copper ion homeostasis [Evidence IMP] [PMID 9520490]; GO_process: GO:0006878 - cellular copper ion homeostasis [Evidence IMP] [PMID 9614122]; GO_process: GO:0006879 - cellular iron ion homeostasis [Evidence IMP] [PMID 9520490]; GO_process: GO:1902476 - chloride transmembrane transport [Evidence IEA]; GO_process: GO:0006821 - chloride transport [Evidence IEA,IEA]; GO_process: GO:0034220 - ion transmembrane transport [Evidence IEA]; GO_process: GO:0006811 - ion transport [Evidence IEA]; GO_process: GO:0044070 - regulation of anion transport [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Gef1p 4472781 GEF1 30033248 GEF1 Sugiyamaella lignohabitans Gef1p XP_018735640.1 4471186 D 796027 CDS AWJ20_1446 30033249 4472914..4474194 A 1 NC_031672.1 Voltage-gated chloride channel; localized to the golgi, the endosomal system, and plasma membrane; involved in cation homeostasis; highly homologous to vertebrate voltage-gated chloride channels; modulates TBSV model (+) RNA virus replication by regulating copper metabolism; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0005794 - Golgi apparatus [Evidence IDA] [PMID 15710404]; GO_component: GO:0005797 - Golgi medial cisterna [Evidence IDA] [PMID 9614122]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA]; GO_component: GO:0034707 - chloride channel complex [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 17662057]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0005768 - endosome [Evidence IEA]; GO_component: GO:0005768 - endosome [Evidence IDA] [PMID 15710404]; GO_component: GO:0010008 - endosome membrane [Evidence IEA]; GO_component: GO:0000324 - fungal-type vacuole [Evidence IDA] [PMID 17662057]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 17662057]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0030554 - adenyl nucleotide binding [Evidence IEA]; GO_function: GO:0005254 - chloride channel activity [Evidence IEA]; GO_function: GO:0005216 - ion channel activity [Evidence IEA]; GO_function: GO:0005247 - voltage-gated chloride channel activity [Evidence IEA]; GO_function: GO:0005247 - voltage-gated chloride channel activity [Evidence IDA] [PMID 12074596]; GO_process: GO:0006878 - cellular copper ion homeostasis [Evidence IMP] [PMID 9520490]; GO_process: GO:0006878 - cellular copper ion homeostasis [Evidence IMP] [PMID 9614122]; GO_process: GO:0006879 - cellular iron ion homeostasis [Evidence IMP] [PMID 9520490]; GO_process: GO:1902476 - chloride transmembrane transport [Evidence IEA]; GO_process: GO:0006821 - chloride transport [Evidence IEA,IEA]; GO_process: GO:0034220 - ion transmembrane transport [Evidence IEA]; GO_process: GO:0006811 - ion transport [Evidence IEA]; GO_process: GO:0044070 - regulation of anion transport [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Gef1p 4474194 GEF1 30033249 GEF1 Sugiyamaella lignohabitans Gef1p XP_018735641.1 4472914 D 796027 CDS AWJ20_1447 30033250 complement(4474282..4475799) A 1 NC_031672.1 Guanosine diphosphatase located in the Golgi; involved in the transport of GDP-mannose into the Golgi lumen by converting GDP to GMP after mannose is transferred its substrate; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0005794 - Golgi apparatus [Evidence TAS] [PMID 11425802]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0004382 - guanosine-diphosphatase activity [Evidence IEA]; GO_function: GO:0004382 - guanosine-diphosphatase activity [Evidence IDA] [PMID 7506254]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA,IEA]; GO_function: GO:0045134 - uridine-diphosphatase activity [Evidence IDA] [PMID 11425802]; GO_process: GO:0006486 - protein glycosylation [Evidence IEA]; GO_process: GO:0006486 - protein glycosylation [Evidence TAS] [PMID 11713596]; Gda1p 4475799 GDA1 30033250 GDA1 Sugiyamaella lignohabitans Gda1p XP_018735642.1 4474282 R 796027 CDS AWJ20_1448 30033251 4476935..4478458 A 1 NC_031672.1 uncharacterized protein 4478458 30033251 AWJ20_1448 Sugiyamaella lignohabitans uncharacterized protein XP_018735643.1 4476935 D 796027 CDS AWJ20_1449 30033252 complement(4478537..4480810) A 1 NC_031672.1 uncharacterized protein 4480810 30033252 AWJ20_1449 Sugiyamaella lignohabitans uncharacterized protein XP_018735644.1 4478537 R 796027 CDS AWJ20_1450 30033254 4482081..4483406 A 1 NC_031672.1 Transcription factor required for response to pheromones; also required during meiosis; exists in two forms, a slower-migrating form more abundant during vegetative growth and a faster-migrating form induced by pheromone; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0008168 - methyltransferase activity [Evidence IEA]; GO_function: GO:0003700 - sequence-specific DNA binding transcription factor activity [Evidence IDA,IGI,IMP] [PMID 17101777]; GO_process: GO:0000741 - karyogamy [Evidence IEA]; GO_process: GO:0000742 - karyogamy involved in conjugation with cellular fusion [Evidence IMP] [PMID 8754797]; GO_process: GO:0007126 - meiotic nuclear division [Evidence IEA]; GO_process: GO:0007126 - meiotic nuclear division [Evidence IMP] [PMID 8754797]; GO_process: GO:0032259 - methylation [Evidence IEA]; GO_process: GO:0046020 - negative regulation of transcription from RNA polymerase II promoter by pheromones [Evidence IEP] [PMID 17101777]; GO_process: GO:0006139 - nucleobase-containing compound metabolic process [Evidence IEA]; GO_process: GO:0007329 - positive regulation of transcription from RNA polymerase II promoter by pheromones [Evidence IDA,IEP,IGI,IMP] [PMID 17101777]; Kar4p 4483406 KAR4 30033254 KAR4 Sugiyamaella lignohabitans Kar4p XP_018735645.1 4482081 D 796027 CDS AWJ20_1451 30033255 complement(4483678..4484643) A 1 NC_031672.1 Sphingolipid C9-methyltransferase 4484643 30033255 AWJ20_1451 Sugiyamaella lignohabitans Sphingolipid C9-methyltransferase XP_018735646.1 4483678 R 796027 CDS AWJ20_1452 30033256 4486495..4488444 A 1 NC_031672.1 Putative ATP-dependent RNA helicase of the DEAD-box protein family; mutants show reduced stability of the 40S ribosomal subunit scanning through 5' untranslated regions of mRNAs; protein abundance increases in response to DNA replication stress; DBP1 has a paralog, DED1, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 23222640]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0008026 - ATP-dependent helicase activity [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003724 - RNA helicase activity [Evidence ISS] [PMID 1857205]; GO_function: GO:0003724 - RNA helicase activity [Evidence ISS] [PMID 8144024]; GO_function: GO:0004386 - helicase activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0003743 - translation initiation factor activity [Evidence IEA]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0006412 - translation [Evidence IEA]; GO_process: GO:0006413 - translational initiation [Evidence IEA]; GO_process: GO:0006413 - translational initiation [Evidence IMP] [PMID 14763975]; putative DEAD-box ATP-dependent RNA helicase DBP1 4488444 DBP1 30033256 DBP1 Sugiyamaella lignohabitans putative DEAD-box ATP-dependent RNA helicase DBP1 XP_018735647.1 4486495 D 796027 CDS AWJ20_1453 30033257 4500659..4504351 A 1 NC_031672.1 ADP-ribosylation factor (ARF) GTPase activating protein (GAP) effector; involved in the secretory and endocytic pathways; contains C2C2H2 cysteine/histidine motif; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005768 - endosome [Evidence IDA] [PMID 21135091]; GO_component: GO:0005802 - trans-Golgi network [Evidence IDA] [PMID 21135091]; GO_function: GO:0008060 - ARF GTPase activator activity [Evidence IEA]; GO_function: GO:0008060 - ARF GTPase activator activity [Evidence IDA] [PMID 12627398]; GO_function: GO:0008060 - ARF GTPase activator activity [Evidence IGI,ISS] [PMID 9677411]; GO_function: GO:0005096 - GTPase activator activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0005543 - phospholipid binding [Evidence IDA] [PMID 21135091]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0006888 - ER to Golgi vesicle-mediated transport [Evidence IGI,ISS] [PMID 9677411]; GO_process: GO:0006891 - intra-Golgi vesicle-mediated transport [Evidence IGI,ISS] [PMID 9677411]; GO_process: GO:0043547 - positive regulation of GTPase activity [Evidence IEA,IEA]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0032312 - regulation of ARF GTPase activity [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Age1p 4504351 AGE1 30033257 AGE1 Sugiyamaella lignohabitans Age1p XP_018735648.1 4500659 D 796027 CDS AWJ20_1454 30033258 4513013..4514992 A 1 NC_031672.1 uncharacterized protein 4514992 30033258 AWJ20_1454 Sugiyamaella lignohabitans uncharacterized protein XP_018735649.1 4513013 D 796027 CDS AWJ20_1455 30033259 4518381..4520393 A 1 NC_031672.1 Aconitase; required for the tricarboxylic acid (TCA) cycle and also independently required for mitochondrial genome maintenance; phosphorylated; component of the mitochondrial nucleoid; mutation leads to glutamate auxotrophy; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 15975908]; GO_component: GO:0005759 - mitochondrial matrix [Evidence IDA] [PMID 15692048]; GO_component: GO:0042645 - mitochondrial nucleoid [Evidence IDA] [PMID 10869431]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA,IEA]; GO_function: GO:0003994 - aconitate hydratase activity [Evidence IEA,IEA]; GO_function: GO:0003994 - aconitate hydratase activity [Evidence IDA,IMP] [PMID 1972545]; GO_function: GO:0003690 - double-stranded DNA binding [Evidence IDA] [PMID 17698960]; GO_function: GO:0051536 - iron-sulfur cluster binding [Evidence IEA]; GO_function: GO:0016829 - lyase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0003697 - single-stranded DNA binding [Evidence IDA] [PMID 17698960]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0000002 - mitochondrial genome maintenance [Evidence IMP] [PMID 15692048]; GO_process: GO:0006099 - tricarboxylic acid cycle [Evidence IEA,IEA,IEA]; GO_process: GO:0006099 - tricarboxylic acid cycle [Evidence IDA] [PMID 1972545]; aconitate hydratase ACO1 4520393 ACO1 30033259 ACO1 Sugiyamaella lignohabitans aconitate hydratase ACO1 XP_018735650.1 4518381 D 796027 CDS AWJ20_1456 30033260 complement(4518590..4518907) A 1 NC_031672.1 uncharacterized protein 4518907 30033260 AWJ20_1456 Sugiyamaella lignohabitans uncharacterized protein XP_018735651.1 4518590 R 796027 CDS AWJ20_1457 30033261 complement(4520526..4522214) A 1 NC_031672.1 Steryl ester hydrolase; one of three gene products (Yeh1p, Yeh2p, Tgl1p) responsible for steryl ester hydrolase activity and involved in sterol homeostasis; localized to lipid particle membranes; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IDA] [PMID 15713625]; GO_component: GO:0005811 - lipid particle [Evidence IEA,IEA]; GO_component: GO:0005811 - lipid particle [Evidence IDA] [PMID 10515935]; GO_component: GO:0005811 - lipid particle [Evidence IDA] [PMID 15713625]; GO_component: GO:0005811 - lipid particle [Evidence IDA] [PMID 24868093]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016298 - lipase activity [Evidence ISS] [PMID 1574929]; GO_function: GO:0004771 - sterol esterase activity [Evidence IEA]; GO_function: GO:0004771 - sterol esterase activity [Evidence IDA] [PMID 15713625]; GO_process: GO:0044255 - cellular lipid metabolic process [Evidence IMP] [PMID 10515935]; GO_process: GO:0016042 - lipid catabolic process [Evidence IEA]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA,IEA]; GO_process: GO:0016125 - sterol metabolic process [Evidence IMP] [PMID 15713625]; Tgl1p 4522214 TGL1 30033261 TGL1 Sugiyamaella lignohabitans Tgl1p XP_018735652.1 4520526 R 796027 CDS AWJ20_1458 30033262 4522796..4523497 A 1 NC_031672.1 Gastric triacylglycerol lipase 4523497 Lipf 30033262 Lipf Sugiyamaella lignohabitans Gastric triacylglycerol lipase XP_018735653.1 4522796 D 796027 CDS AWJ20_1459 30033263 4525429..4526472 A 1 NC_031672.1 Plasma membrane protein involved in remodeling GPI anchors; member of the MBOAT family of putative membrane-bound O-acyltransferases; role in misfolded protein quality control; proposed to be involved in glycerol transport; GUP1 has a paralog, GUP2, that arose from the whole genome duplication; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 15813700]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0016020 - membrane [Evidence IDA,ISS] [PMID 10931309]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 15813700]; GO_function: GO:0008374 - O-acyltransferase activity [Evidence IMP] [PMID 16597698]; GO_function: GO:0008374 - O-acyltransferase activity [Evidence IMP] [PMID 18036137]; GO_function: GO:0015293 - symporter activity [Evidence IEA]; GO_process: GO:0006506 - GPI anchor biosynthetic process [Evidence IMP] [PMID 16597698]; GO_process: GO:0019563 - glycerol catabolic process [Evidence IGI,IMP] [PMID 10747858]; GO_process: GO:0015793 - glycerol transport [Evidence IGI,IMP] [PMID 10931309]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Gup1p 4526472 GUP1 30033263 GUP1 Sugiyamaella lignohabitans Gup1p XP_018735654.1 4525429 D 796027 CDS AWJ20_1460 30033265 complement(4526890..4527633) A 1 NC_031672.1 hypothetical protein; mutant has long chronological lifespan; has homology to Staphylococcus aureus nuclease; GFP-fusion protein localizes to mitochondria; is induced in response to the DNA-damaging agent MMS; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_function: GO:0004519 - endonuclease activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016788 - hydrolase activity, acting on ester bonds [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0004518 - nuclease activity [Evidence IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0008152 - metabolic process [Evidence IEA,IEA]; GO_process: GO:0090305 - nucleic acid phosphodiester bond hydrolysis [Evidence IEA]; Lcl3p 4527633 LCL3 30033265 LCL3 Sugiyamaella lignohabitans Lcl3p XP_018735655.1 4526890 R 796027 CDS AWJ20_1461 30033266 4528370..4530421 A 1 NC_031672.1 Boron efflux transporter of the plasma membrane; binds HCO3-, I-, Br-, NO3- and Cl-; has similarity to the characterized boron efflux transporter A. thaliana BOR1; GO_component: GO:0000324 - fungal-type vacuole [Evidence IDA] [PMID 16565073]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 11401825]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 11401825]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 12447444]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0015301 - anion:anion antiporter activity [Evidence IEA]; GO_function: GO:0080139 - borate efflux transmembrane transporter activity [Evidence IMP,ISA] [PMID 12447444]; GO_function: GO:0080139 - borate efflux transmembrane transporter activity [Evidence IMP] [PMID 16923078]; GO_function: GO:0080139 - borate efflux transmembrane transporter activity [Evidence IDA,IMP] [PMID 17459946]; GO_function: GO:0005452 - inorganic anion exchanger activity [Evidence IEA]; GO_process: GO:0006820 - anion transport [Evidence IEA]; GO_process: GO:0046713 - borate transport [Evidence IMP,ISA] [PMID 12447444]; GO_process: GO:0046713 - borate transport [Evidence IMP] [PMID 16923078]; GO_process: GO:0046713 - borate transport [Evidence IDA,IMP] [PMID 17459946]; GO_process: GO:0006811 - ion transport [Evidence IEA]; GO_process: GO:0006623 - protein targeting to vacuole [Evidence IMP] [PMID 16565073]; GO_process: GO:0006810 - transport [Evidence IEA]; Bor1p 4530421 BOR1 30033266 BOR1 Sugiyamaella lignohabitans Bor1p XP_018735656.1 4528370 D 796027 CDS AWJ20_1462 30033267 complement(4530626..4532293) A 1 NC_031672.1 uncharacterized protein 4532293 30033267 AWJ20_1462 Sugiyamaella lignohabitans uncharacterized protein XP_018735657.1 4530626 R 796027 CDS AWJ20_1463 30033268 4533704..4534009 A 1 NC_031672.1 Ubiquitin-conjugating enzyme variant; involved in error-free postreplication repair; forms a heteromeric complex with Ubc13p, an active ubiquitin-conjugating enzyme; cooperates with chromatin-associated RING finger proteins, Rad18p and Rad5p; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 10880451]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 10880451]; GO_component: GO:0031371 - ubiquitin conjugating enzyme complex [Evidence IPI] [PMID 10089880]; GO_function: GO:0016881 - acid-amino acid ligase activity [Evidence IEA]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence IDA,ISS] [PMID 10089880]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence ISS] [PMID 9576943]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IMP] [PMID 12482937]; GO_process: GO:0010994 - free ubiquitin chain polymerization [Evidence IDA] [PMID 19706603]; GO_process: GO:0006301 - postreplication repair [Evidence IGI,IMP] [PMID 10089880]; GO_process: GO:0006301 - postreplication repair [Evidence IGI,IMP] [PMID 9576943]; GO_process: GO:0000209 - protein polyubiquitination [Evidence IDA,IPI] [PMID 10089880]; E2 ubiquitin-conjugating protein MMS2 4534009 MMS2 30033268 MMS2 Sugiyamaella lignohabitans E2 ubiquitin-conjugating protein MMS2 XP_018735658.1 4533704 D 796027 CDS AWJ20_1464 30033269 4535737..4536402 A 1 NC_031672.1 Component of two distinct complexes; subunit of the Nup84 nuclear pore sub-complex (NPC) and the Seh1-associated (SEA) complex; the the NUP84 subcomplex contributes to nucleocytoplasmic transport and NPC biogenesis; the SEA complex is a coatamer-related complex that associates dynamically with the vacuole; homologous to human SEH1; GO_component: GO:0035859 - Seh1-associated complex [Evidence IDA] [PMID 21454883]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 21454883]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005643 - nuclear pore [Evidence IEA,IEA]; GO_component: GO:0005643 - nuclear pore [Evidence IDA] [PMID 10684247]; GO_component: GO:0031080 - nuclear pore outer ring [Evidence IDA] [PMID 11823431]; GO_component: GO:0031080 - nuclear pore outer ring [Evidence IDA] [PMID 18046406]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0017056 - structural constituent of nuclear pore [Evidence IC] [PMID 11823431]; GO_process: GO:0051028 - mRNA transport [Evidence IEA]; GO_process: GO:0006913 - nucleocytoplasmic transport [Evidence IC] [PMID 10684247]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Seh1p 4536402 SEH1 30033269 SEH1 Sugiyamaella lignohabitans Seh1p XP_018735659.1 4535737 D 796027 CDS AWJ20_1465 30033270 4537216..4538511 A 1 NC_031672.1 Constituent of 66S pre-ribosomal particles; involved in 60S ribosomal subunit biogenesis; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 11583614]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 17443350]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 23212245]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0042273 - ribosomal large subunit biogenesis [Evidence IMP] [PMID 11583614]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; Nsa1p 4538511 NSA1 30033270 NSA1 Sugiyamaella lignohabitans Nsa1p XP_018735660.1 4537216 D 796027 CDS AWJ20_1466 30033271 complement(4538662..4540266) A 1 NC_031672.1 hypothetical protein; has a CUE domain that binds ubiquitin, which may facilitate intramolecular monoubiquitination; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0043130 - ubiquitin binding [Evidence IDA] [PMID 12628920]; GO_process: GO:0008150 - biological_process [Evidence ND]; Cue3p 4540266 CUE3 30033271 CUE3 Sugiyamaella lignohabitans Cue3p XP_018735661.1 4538662 R 796027 CDS AWJ20_1467 30033272 4542509..4544701 A 1 NC_031672.1 Putative transcription factor, contains Forkhead Associated domain; found associated with chromatin; target of SBF transcription factor; expression is periodic and peaks in G1; involved in DNA replication checkpoint response; interacts with Rpd3 and Set3 histone deacetylase (HDAC) complexes; APCC(Cdh1) substrate; relative distribution to the nucleus increases upon DNA replication stress; TOS4 has a paralog, PLM2, that arose from the whole genome duplication; GO_component: GO:0070210 - Rpd3L-Expanded complex [Evidence IDA] [PMID 19040720]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0000790 - nuclear chromatin [Evidence IDA] [PMID 12464632]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 15282802]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_function: GO:0003682 - chromatin binding [Evidence IDA] [PMID 12464632]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IGI] [PMID 12760057]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IGI] [PMID 22333912]; Tos4p 4544701 TOS4 30033272 TOS4 Sugiyamaella lignohabitans Tos4p XP_018735662.1 4542509 D 796027 CDS AWJ20_1468 30033273 complement(4544910..4546193) A 1 NC_031672.1 Phosphatidate cytidylyltransferase (CDP-diglyceride synthetase); an enzyme that catalyzes that conversion of CTP + phosphate into diphosphate + CDP-diaclglyerol, a critical step in the synthesis of all major yeast phospholipids; GO_component: GO:0070319 - Golgi to plasma membrane transport vesicle [Evidence IDA] [PMID 2163397]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 23623749]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 8557688]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0031966 - mitochondrial membrane [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_function: GO:0016779 - nucleotidyltransferase activity [Evidence IEA]; GO_function: GO:0004605 - phosphatidate cytidylyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0004605 - phosphatidate cytidylyltransferase activity [Evidence IDA] [PMID 8557688]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016772 - transferase activity, transferring phosphorus-containing groups [Evidence IEA]; GO_process: GO:0016024 - CDP-diacylglycerol biosynthetic process [Evidence IEA]; GO_process: GO:0016024 - CDP-diacylglycerol biosynthetic process [Evidence IMP] [PMID 2832385]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0046488 - phosphatidylinositol metabolic process [Evidence IMP] [PMID 2832385]; GO_process: GO:0046488 - phosphatidylinositol metabolic process [Evidence IMP] [PMID 8557688]; GO_process: GO:0006658 - phosphatidylserine metabolic process [Evidence IMP] [PMID 2832385]; GO_process: GO:0008654 - phospholipid biosynthetic process [Evidence IEA]; phosphatidate cytidylyltransferase 4546193 CDS1 30033273 CDS1 Sugiyamaella lignohabitans phosphatidate cytidylyltransferase XP_018735663.1 4544910 R 796027 CDS AWJ20_1469 30033274 join(4548779..4549465,4549967..4551358) A 1 NC_031672.1 Nicotinamide mononucleotide-specific adenylyltransferase (NMNAT); catalyzes the conversion of nicotinamide mononucleotide (NMN) to nicotinamide adenine dinucleotide (NAD+); role in the nicotinamide riboside (NR) salvage pathway of NAD+ biosynthesis; involved in NR and NAD+ homeostasis; ATPase involved in protein quality control and filamentation pathways; interacts physically with Kss1p and suppresses the filamentation defect of a kss1 deletion; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 24759102]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 24759102]; GO_function: GO:0016887 - ATPase activity [Evidence IDA] [PMID 22204397]; GO_function: GO:0000309 - nicotinamide-nucleotide adenylyltransferase activity [Evidence IDA,IGI] [PMID 24759102]; GO_process: GO:0030433 - ER-associated ubiquitin-dependent protein catabolic process [Evidence IMP,IPI] [PMID 22204397]; GO_process: GO:0034356 - NAD biosynthesis via nicotinamide riboside salvage pathway [Evidence IGI] [PMID 24759102]; GO_process: GO:0001403 - invasive growth in response to glucose limitation [Evidence IGI] [PMID 21460040]; GO_process: GO:0007124 - pseudohyphal growth [Evidence IGI] [PMID 21460040]; Pof1p 4551358 POF1 30033274 POF1 Sugiyamaella lignohabitans Pof1p XP_018735664.1 4548779 D 796027 CDS AWJ20_1470 30033276 complement(4549937..4550839) A 1 NC_031672.1 GPI-anchored hypothetical protein; possible role in apical bud growth; GPI-anchoring on the plasma membrane crucial to function; phosphorylated in mitochondria; similar to Sps2p; ECM33 has a paralog, PST1, that arose from the whole genome duplication; GO_component: GO:0031225 - anchored component of membrane [Evidence IEA]; GO_component: GO:0005618 - cell wall [Evidence IEA,IEA]; GO_component: GO:0005576 - extracellular region [Evidence IEA]; GO_component: GO:0009277 - fungal-type cell wall [Evidence IDA] [PMID 15781460]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 12583915]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 16622836]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0031505 - fungal-type cell wall organization [Evidence IMP] [PMID 15583168]; Ecm33p 4550839 ECM33 30033276 ECM33 Sugiyamaella lignohabitans Ecm33p XP_018735665.1 4549937 R 796027 CDS AWJ20_1471 30033277 4558721..4559752 A 1 NC_031672.1 Threonine aldolase; catalyzes the cleavage of L-allo-threonine and L-threonine to glycine; involved in glycine biosynthesis; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 12676688]; GO_function: GO:0008732 - L-allo-threonine aldolase activity [Evidence IDA] [PMID 9151955]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016829 - lyase activity [Evidence IEA,IEA]; GO_function: GO:0030170 - pyridoxal phosphate binding [Evidence IEA]; GO_function: GO:0004793 - threonine aldolase activity [Evidence IDA] [PMID 9163906]; GO_process: GO:0006520 - cellular amino acid metabolic process [Evidence IEA]; GO_process: GO:0006545 - glycine biosynthetic process [Evidence IEA]; GO_process: GO:0006545 - glycine biosynthetic process [Evidence IDA] [PMID 3086094]; GO_process: GO:0006567 - threonine catabolic process [Evidence IDA] [PMID 3086094]; threonine aldolase GLY1 4559752 GLY1 30033277 GLY1 Sugiyamaella lignohabitans threonine aldolase GLY1 XP_018735666.1 4558721 D 796027 CDS AWJ20_1472 30033278 4561530..4562324 A 1 NC_031672.1 Protein component of the small (40S) subunit; essential for control of translational accuracy; phosphorylation by C-terminal domain kinase I (CTDK-I) enhances translational accuracy; methylated on one or more arginine residues by Hmt1p; homologous to mammalian ribosomal protein S2 and bacterial S5; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0022627 - cytosolic small ribosomal subunit [Evidence IDA] [PMID 2517480]; GO_component: GO:0022627 - cytosolic small ribosomal subunit [Evidence IDA] [PMID 3533916]; GO_component: GO:0022627 - cytosolic small ribosomal subunit [Evidence IDA] [PMID 385049]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA,IEA]; GO_component: GO:0015935 - small ribosomal subunit [Evidence IEA]; GO_component: GO:0032040 - small-subunit processome [Evidence IDA] [PMID 15590835]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0070181 - small ribosomal subunit rRNA binding [Evidence IDA] [PMID 2517480]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IDA] [PMID 2517480]; GO_process: GO:0045903 - positive regulation of translational fidelity [Evidence IMP] [PMID 17545469]; GO_process: GO:0045903 - positive regulation of translational fidelity [Evidence IMP] [PMID 3522920]; GO_process: GO:0006407 - rRNA export from nucleus [Evidence IMP] [PMID 16246728]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; GO_process: GO:0006412 - translation [Evidence IEA]; ribosomal 40S subunit protein S2 4562324 RPS2 30033278 RPS2 Sugiyamaella lignohabitans ribosomal 40S subunit protein S2 XP_018735667.1 4561530 D 796027 CDS AWJ20_1473 30033279 complement(4562794..4563546) A 1 NC_031672.1 Membrane-bound peptidyl-prolyl cis-trans isomerase (PPIase); binds to the drugs FK506 and rapamycin; expression pattern suggests possible involvement in ER protein trafficking; relocalizes from nucleus to vacuole upon DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence ISS] [PMID 7685904]; GO_component: GO:0016020 - membrane [Evidence IBA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_function: GO:0005528 - FK506 binding [Evidence IDA] [PMID 1380159]; GO_function: GO:0016853 - isomerase activity [Evidence IEA]; GO_function: GO:0003755 - peptidyl-prolyl cis-trans isomerase activity [Evidence IBA,IEA,IEA]; GO_function: GO:0003755 - peptidyl-prolyl cis-trans isomerase activity [Evidence ISS] [PMID 7685904]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0018208 - peptidyl-proline modification [Evidence IBA]; GO_process: GO:0006457 - protein folding [Evidence IEA,IEA]; GO_process: GO:0000413 - protein peptidyl-prolyl isomerization [Evidence IEA,IEA]; peptidylprolyl isomerase family protein FPR2 4563546 FPR2 30033279 FPR2 Sugiyamaella lignohabitans peptidylprolyl isomerase family protein FPR2 XP_018735668.1 4562794 R 796027 CDS AWJ20_1474 30033280 complement(4564212..4564850) A 1 NC_031672.1 Membrane-bound peptidyl-prolyl cis-trans isomerase (PPIase); binds to the drugs FK506 and rapamycin; expression pattern suggests possible involvement in ER protein trafficking; relocalizes from nucleus to vacuole upon DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence ISS] [PMID 7685904]; GO_component: GO:0016020 - membrane [Evidence IBA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_function: GO:0005528 - FK506 binding [Evidence IDA] [PMID 1380159]; GO_function: GO:0016853 - isomerase activity [Evidence IEA]; GO_function: GO:0003755 - peptidyl-prolyl cis-trans isomerase activity [Evidence IBA,IEA,IEA]; GO_function: GO:0003755 - peptidyl-prolyl cis-trans isomerase activity [Evidence ISS] [PMID 7685904]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0018208 - peptidyl-proline modification [Evidence IBA]; GO_process: GO:0006457 - protein folding [Evidence IEA,IEA]; GO_process: GO:0000413 - protein peptidyl-prolyl isomerization [Evidence IEA,IEA]; peptidylprolyl isomerase family protein FPR2 4564850 FPR2 30033280 FPR2 Sugiyamaella lignohabitans peptidylprolyl isomerase family protein FPR2 XP_018735669.1 4564212 R 796027 CDS AWJ20_1475 30033281 complement(4565198..4567969) A 1 NC_031672.1 Member of conserved endoplasmic reticulum membrane complex; involved in efficient folding of proteins in the ER; null mutant displays induction of the unfolded protein response; interacts with Gal80p; homologous to worm H17B01.4/EMC-1, fly CG2943, and human KIAA0090; GO_component: GO:0072546 - ER membrane protein complex [Evidence IEA]; GO_component: GO:0072546 - ER membrane protein complex [Evidence IDA] [PMID 19325107]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 14562095]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0034975 - protein folding in endoplasmic reticulum [Evidence IGI] [PMID 19325107]; Emc1p 4567969 EMC1 30033281 EMC1 Sugiyamaella lignohabitans Emc1p XP_018735670.1 4565198 R 796027 CDS AWJ20_1476 30033282 4568495..4569262 A 1 NC_031672.1 uncharacterized protein 4569262 30033282 AWJ20_1476 Sugiyamaella lignohabitans uncharacterized protein XP_018735671.1 4568495 D 796027 CDS AWJ20_1477 30033283 4569407..4572670 A 1 NC_031672.1 mRNA export factor; required for biogenesis of the small ribosomal subunit; component of TREX-2 complex (Sac3p-Thp1p-Sus1p-Cdc31p) involved in transcription elongation and mRNA export from the nucleus; involved in post-transcriptional tethering of active genes to the nuclear periphery and to non-nascent mRNP; similar to the human germinal center-associated nuclear protein (GANP); GO_component: GO:0005635 - nuclear envelope [Evidence IEA]; GO_component: GO:0005643 - nuclear pore [Evidence IDA] [PMID 12631707]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0070390 - transcription export complex 2 [Evidence IDA] [PMID 15311284]; GO_function: GO:0005515 - protein binding [Evidence IPI] [PMID 12411502]; GO_process: GO:0030029 - actin filament-based process [Evidence IGI] [PMID 2656401]; GO_process: GO:0031124 - mRNA 3'-end processing [Evidence IMP] [PMID 18614048]; GO_process: GO:0006406 - mRNA export from nucleus [Evidence IMP] [PMID 12411502]; GO_process: GO:0006406 - mRNA export from nucleus [Evidence IGI,IMP,IPI] [PMID 12631707]; GO_process: GO:0051028 - mRNA transport [Evidence IEA]; GO_process: GO:0007067 - mitotic nuclear division [Evidence IMP] [PMID 8799844]; GO_process: GO:0071033 - nuclear retention of pre-mRNA at the site of transcription [Evidence IMP] [PMID 18003937]; GO_process: GO:0000973 - posttranscriptional tethering of RNA polymerase II gene DNA at nuclear periphery [Evidence IMP] [PMID 18003937]; GO_process: GO:0006611 - protein export from nucleus [Evidence IGI,IMP] [PMID 10716708]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0042274 - ribosomal small subunit biogenesis [Evidence IMP] [PMID 19806183]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006283 - transcription-coupled nucleotide-excision repair [Evidence IMP] [PMID 17537816]; GO_process: GO:0006810 - transport [Evidence IEA]; Sac3p 4572670 SAC3 30033283 SAC3 Sugiyamaella lignohabitans Sac3p XP_018735672.1 4569407 D 796027 CDS AWJ20_1478 30033284 complement(4573014..4575218) A 1 NC_031672.1 uncharacterized protein 4575218 30033284 AWJ20_1478 Sugiyamaella lignohabitans uncharacterized protein XP_018735673.1 4573014 R 796027 CDS AWJ20_1479 30033285 4578459..4580372 A 1 NC_031672.1 uncharacterized protein 4580372 30033285 AWJ20_1479 Sugiyamaella lignohabitans uncharacterized protein XP_018735674.1 4578459 D 796027 CDS AWJ20_1480 30033287 complement(4581563..4583590) A 1 NC_031672.1 Serine/threonine protein phosphatase Z, isoform of Ppz2p; involved in regulation of potassium transport, which affects osmotic stability, cell cycle progression, and halotolerance; PPZ1 has a paralog, PPZ2, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0019897 - extrinsic component of plasma membrane [Evidence IDA] [PMID 16166647]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11914276]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 8824289]; GO_function: GO:0048037 - cofactor binding [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA,IEA]; GO_function: GO:0004724 - magnesium-dependent protein serine/threonine phosphatase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004721 - phosphoprotein phosphatase activity [Evidence IEA,IEA]; GO_function: GO:0004722 - protein serine/threonine phosphatase activity [Evidence IDA] [PMID 7615085]; GO_process: GO:0034613 - cellular protein localization [Evidence IMP] [PMID 21237705]; GO_process: GO:0006883 - cellular sodium ion homeostasis [Evidence IGI,IMP] [PMID 7768897]; GO_process: GO:0006470 - protein dephosphorylation [Evidence IMP] [PMID 21237705]; Ppz1p 4583590 PPZ1 30033287 PPZ1 Sugiyamaella lignohabitans Ppz1p XP_018735675.1 4581563 R 796027 CDS AWJ20_1481 30033288 complement(4586110..4587756) A 1 NC_031672.1 uncharacterized protein 4587756 30033288 AWJ20_1481 Sugiyamaella lignohabitans uncharacterized protein XP_018735676.1 4586110 R 796027 CDS AWJ20_1482 30033289 join(4588644..4588714,4590370..4599187) A 1 NC_031672.1 uncharacterized protein 4599187 30033289 AWJ20_1482 Sugiyamaella lignohabitans uncharacterized protein XP_018735677.1 4588644 D 796027 CDS AWJ20_1483 30033290 4599314..4600180 A 1 NC_031672.1 Uncharacterized protein YPR117W 4600180 30033290 AWJ20_1483 Sugiyamaella lignohabitans Uncharacterized protein YPR117W XP_018735678.1 4599314 D 796027 CDS AWJ20_1484 30033291 complement(4600615..4601292) A 1 NC_031672.1 uncharacterized protein 4601292 30033291 AWJ20_1484 Sugiyamaella lignohabitans uncharacterized protein XP_018735679.1 4600615 R 796027 CDS AWJ20_1485 30033292 4605208..4608444 A 1 NC_031672.1 uncharacterized protein 4608444 30033292 AWJ20_1485 Sugiyamaella lignohabitans uncharacterized protein XP_018735680.1 4605208 D 796027 CDS AWJ20_1486 30033293 complement(4608924..4609319) A 1 NC_031672.1 Ribosomal 60S subunit protein L32; overexpression disrupts telomeric silencing; homologous to mammalian ribosomal protein L32, no bacterial homolog; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0022625 - cytosolic large ribosomal subunit [Evidence IDA] [PMID 11983894]; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA,IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IC] [PMID 11983894]; GO_process: GO:0002181 - cytoplasmic translation [Evidence IC] [PMID 11983894]; GO_process: GO:0006412 - translation [Evidence IEA]; ribosomal 60S subunit protein L32 4609319 RPL32 30033293 RPL32 Sugiyamaella lignohabitans ribosomal 60S subunit protein L32 XP_018735681.1 4608924 R 796027 CDS AWJ20_1487 30033294 4611188..4614076 A 1 NC_031672.1 Cytoplasmic GTPase-activating protein; activates Ypt/Rab transport GTPases Ypt6p, Ypt31p and Sec4p; involved in recycling of internalized proteins and regulation of Golgi secretory function; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 12807768]; GO_function: GO:0005096 - GTPase activator activity [Evidence IEA]; GO_function: GO:0005097 - Rab GTPase activator activity [Evidence IEA]; GO_function: GO:0005097 - Rab GTPase activator activity [Evidence IDA,ISS] [PMID 10559187]; GO_function: GO:0005509 - calcium ion binding [Evidence IEA]; GO_process: GO:0006886 - intracellular protein transport [Evidence IGI] [PMID 15574876]; GO_process: GO:0043547 - positive regulation of GTPase activity [Evidence IEA]; GO_process: GO:0032851 - positive regulation of Rab GTPase activity [Evidence IEA]; GO_process: GO:0032313 - regulation of Rab GTPase activity [Evidence IEA]; Mdr1p 4614076 MDR1 30033294 MDR1 Sugiyamaella lignohabitans Mdr1p XP_018735682.1 4611188 D 796027 CDS AWJ20_1488 30033295 4619150..4619614 A 1 NC_031672.1 Mitochondrial intermembrane space protein; required for normal oxygen consumption; contains twin cysteine-x9-cysteine motifs; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IEA]; GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IDA] [PMID 17095012]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0009060 - aerobic respiration [Evidence IMP] [PMID 19703468]; Mix17p 4619614 MIX17 30033295 MIX17 Sugiyamaella lignohabitans Mix17p XP_018735683.1 4619150 D 796027 CDS AWJ20_1489 30033296 complement(4620046..4620681) A 1 NC_031672.1 Non-essential small GTPase of the Rho/Rac family of Ras-like proteins; involved in the establishment of cell polarity; GTPase activity positively regulated by the GTPase activating protein (GAP) Rgd1p; GO_component: GO:0005933 - cellular bud [Evidence IDA] [PMID 10207081]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 10207081]; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 16622836]; GO_function: GO:0005525 - GTP binding [Evidence IEA,IEA]; GO_function: GO:0005525 - GTP binding [Evidence IDA] [PMID 10207081]; GO_function: GO:0003924 - GTPase activity [Evidence IDA] [PMID 10526184]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0030950 - establishment or maintenance of actin cytoskeleton polarity [Evidence IMP] [PMID 10588647]; GO_process: GO:0030950 - establishment or maintenance of actin cytoskeleton polarity [Evidence IMP] [PMID 8852836]; GO_process: GO:0045921 - positive regulation of exocytosis [Evidence IMP] [PMID 10588647]; GO_process: GO:0045921 - positive regulation of exocytosis [Evidence IGI,IPI] [PMID 19955214]; GO_process: GO:0045921 - positive regulation of exocytosis [Evidence IGI] [PMID 8852836]; GO_process: GO:0090338 - positive regulation of formin-nucleated actin cable assembly [Evidence IGI,IMP] [PMID 12810699]; GO_process: GO:0007264 - small GTPase mediated signal transduction [Evidence IEA]; Rho family GTPase RHO3 4620681 RHO3 30033296 RHO3 Sugiyamaella lignohabitans Rho family GTPase RHO3 XP_018735684.1 4620046 R 796027 CDS AWJ20_1490 30033298 4622449..4623186 A 1 NC_031672.1 Chaperone protein dnaJ 4623186 HLJ1 30033298 HLJ1 Sugiyamaella lignohabitans Chaperone protein dnaJ XP_018735685.1 4622449 D 796027 CDS AWJ20_1491 30033299 complement(4623476..4624330) A 1 NC_031672.1 porin POR1 4624330 POR1 30033299 POR1 Sugiyamaella lignohabitans porin POR1 XP_018735686.1 4623476 R 796027 CDS AWJ20_1492 30033300 complement(4646296..4648575) A 1 NC_031672.1 uncharacterized protein 4648575 30033300 AWJ20_1492 Sugiyamaella lignohabitans uncharacterized protein XP_018735687.1 4646296 R 796027 CDS AWJ20_1493 30033301 4649222..4650298 A 1 NC_031672.1 uncharacterized protein 4650298 30033301 AWJ20_1493 Sugiyamaella lignohabitans uncharacterized protein XP_018735688.1 4649222 D 796027 CDS AWJ20_1494 30033302 complement(4650348..4653401) A 1 NC_031672.1 uncharacterized protein 4653401 30033302 AWJ20_1494 Sugiyamaella lignohabitans uncharacterized protein XP_018735689.1 4650348 R 796027 CDS AWJ20_1495 30033303 4654625..4655968 A 1 NC_031672.1 uncharacterized protein 4655968 30033303 AWJ20_1495 Sugiyamaella lignohabitans uncharacterized protein XP_018735690.1 4654625 D 796027 CDS AWJ20_1496 30033304 4660657..4661334 A 1 NC_031672.1 One of four subunits of the ESCRT-III complex; forms an endosomal sorting complex required for transport III (ESCRT-III) subcomplex with Did4p; involved in the sorting of transmembrane proteins into the multivesicular body (MVB) pathway; GO_component: GO:0000815 - ESCRT III complex [Evidence IDA] [PMID 12194857]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 9606181]; GO_component: GO:0012505 - endomembrane system [Evidence IEA]; GO_component: GO:0005768 - endosome [Evidence IEA]; GO_component: GO:0010008 - endosome membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0070676 - intralumenal vesicle formation [Evidence IMP] [PMID 19234443]; GO_process: GO:0045324 - late endosome to vacuole transport [Evidence IMP] [PMID 9606181]; GO_process: GO:0015031 - protein transport [Evidence IEA,IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0043162 - ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway [Evidence IC] [PMID 15086794]; ESCRT-III subunit protein VPS24 4661334 VPS24 30033304 VPS24 Sugiyamaella lignohabitans ESCRT-III subunit protein VPS24 XP_018735691.1 4660657 D 796027 CDS AWJ20_1497 30033305 4662392..4665823 A 1 NC_031672.1 uncharacterized protein 4665823 30033305 AWJ20_1497 Sugiyamaella lignohabitans uncharacterized protein XP_018735692.1 4662392 D 796027 CDS AWJ20_1498 30033306 complement(4666187..4667380) A 1 NC_031672.1 RNA polymerase II transcription elongation factor SpEAF 4667380 eaf1 30033306 eaf1 Sugiyamaella lignohabitans RNA polymerase II transcription elongation factor SpEAF XP_018735693.1 4666187 R 796027 CDS AWJ20_1499 30033307 4668468..4670057 A 1 NC_031672.1 ATP (CTP):tRNA-specific tRNA nucleotidyltransferase; different forms targeted to the nucleus, cytosol, and mitochondrion are generated via the use of multiple transcriptional and translational start sites; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence NAS] [PMID 1634528]; GO_component: GO:0005737 - cytoplasm [Evidence NAS] [PMID 8175766]; GO_component: GO:0005737 - cytoplasm [Evidence NAS] [PMID 8617732]; GO_component: GO:0005759 - mitochondrial matrix [Evidence IDA] [PMID 1634528]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence NAS] [PMID 1634528]; GO_component: GO:0005634 - nucleus [Evidence NAS] [PMID 8175766]; GO_component: GO:0005634 - nucleus [Evidence NAS] [PMID 8617732]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0052929 - ATP:3'-cytidine-cytidine-tRNA adenylyltransferase activity [Evidence IEA]; GO_function: GO:0052928 - CTP:3'-cytidine-tRNA cytidylyltransferase activity [Evidence IEA]; GO_function: GO:0052927 - CTP:tRNA cytidylyltransferase activity [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA,IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016779 - nucleotidyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0004810 - tRNA adenylyltransferase activity [Evidence IDA] [PMID 1634528]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006396 - RNA processing [Evidence IEA]; GO_process: GO:0001680 - tRNA 3'-terminal CCA addition [Evidence IEA]; GO_process: GO:0001680 - tRNA 3'-terminal CCA addition [Evidence IDA] [PMID 1634528]; Cca1p 4670057 CCA1 30033307 CCA1 Sugiyamaella lignohabitans Cca1p XP_018735694.1 4668468 D 796027 CDS AWJ20_1500 30033310 complement(4670305..4672227) A 1 NC_031672.1 Chitin synthase II; catalyzes transfer of N-acetylglucosamine (GlcNAc) to chitin upon activation of zymogenic form; required for chitin synthesis in the primary septum during cytokinesis; localization regulated by Cdk1p during mitosis; phosphorylation by Dbf2p kinase regulates its dynamics and chitin synthesis during cytokinesis; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 8909536]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_function: GO:0004100 - chitin synthase activity [Evidence IEA,IEA]; GO_function: GO:0004100 - chitin synthase activity [Evidence IDA] [PMID 9990311]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA]; GO_function: GO:0016758 - transferase activity, transferring hexosyl groups [Evidence IEA]; GO_process: GO:0000916 - actomyosin contractile ring contraction [Evidence IMP] [PMID 11839781]; GO_process: GO:0000916 - actomyosin contractile ring contraction [Evidence IDA] [PMID 15772160]; GO_process: GO:0006031 - chitin biosynthetic process [Evidence IEA]; GO_process: GO:0006031 - chitin biosynthetic process [Evidence IMP] [PMID 22573892]; chitin synthase CHS2 4672227 CHS2 30033310 CHS2 Sugiyamaella lignohabitans chitin synthase CHS2 XP_018735695.1 4670305 R 796027 CDS AWJ20_1501 30033311 complement(4672394..4673491) A 1 NC_031672.1 uncharacterized protein 4673491 30033311 AWJ20_1501 Sugiyamaella lignohabitans uncharacterized protein XP_018735696.1 4672394 R 796027 CDS AWJ20_1502 30033312 4676653..4677591 A 1 NC_031672.1 NADPH-dependent alpha-keto amide reductase; reduces aromatic alpha-keto amides, aliphatic alpha-keto esters, and aromatic alpha-keto esters; member of the aldo-keto reductase (AKR) family; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 16622836]; GO_function: GO:0004032 - alditol:NADP+ 1-oxidoreductase activity [Evidence IDA,ISS] [PMID 11306085]; GO_function: GO:0004033 - aldo-keto reductase (NADP) activity [Evidence IDA] [PMID 17140678]; GO_function: GO:0051268 - alpha-keto amide reductase activity [Evidence IDA] [PMID 15564669]; GO_function: GO:0051269 - alpha-keto ester reductase activity [Evidence IDA] [PMID 15564669]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_process: GO:0043603 - cellular amide metabolic process [Evidence IDA] [PMID 15564669]; GO_process: GO:0006725 - cellular aromatic compound metabolic process [Evidence IDA] [PMID 16268655]; GO_process: GO:0042180 - cellular ketone metabolic process [Evidence IDA] [PMID 17140678]; GO_process: GO:0034599 - cellular response to oxidative stress [Evidence IGI] [PMID 17919749]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; aldo-keto reductase superfamily protein 4677591 30033312 AWJ20_1502 Sugiyamaella lignohabitans aldo-keto reductase superfamily protein XP_018735697.1 4676653 D 796027 CDS AWJ20_1503 30033313 complement(4677812..4680886) A 1 NC_031672.1 Protein required for mismatch repair in mitosis and meiosis; forms a complex with Msh2p to repair both single-base & insertion-deletion mispairs; also involved in interstrand cross-link repair; potentially phosphorylated by Cdc28p; GO_component: GO:0032301 - MutSalpha complex [Evidence IPI] [PMID 8816473]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0000228 - nuclear chromosome [Evidence IBA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0005524 - ATP binding [Evidence IDA] [PMID 9545323]; GO_function: GO:0016887 - ATPase activity [Evidence IDA] [PMID 9819445]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0008094 - DNA-dependent ATPase activity [Evidence IBA]; GO_function: GO:0003684 - damaged DNA binding [Evidence IBA]; GO_function: GO:0000400 - four-way junction DNA binding [Evidence IDA] [PMID 10066781]; GO_function: GO:0032137 - guanine/thymine mispair binding [Evidence IDA] [PMID 8816473]; GO_function: GO:0030983 - mismatched DNA binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0032138 - single base insertion or deletion binding [Evidence IMP] [PMID 10347163]; GO_function: GO:0032138 - single base insertion or deletion binding [Evidence IDA] [PMID 8816473]; GO_process: GO:0006281 - DNA repair [Evidence IEA]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0036297 - interstrand cross-link repair [Evidence IGI] [PMID 22912599]; GO_process: GO:0043570 - maintenance of DNA repeat elements [Evidence IBA]; GO_process: GO:0000710 - meiotic mismatch repair [Evidence IMP] [PMID 16702432]; GO_process: GO:0006298 - mismatch repair [Evidence IEA]; GO_process: GO:0006298 - mismatch repair [Evidence IDA] [PMID 11237611]; GO_process: GO:0006298 - mismatch repair [Evidence IMP] [PMID 2685551]; GO_process: GO:0006298 - mismatch repair [Evidence IMP] [PMID 9520271]; GO_process: GO:0045910 - negative regulation of DNA recombination [Evidence IBA]; GO_process: GO:0007131 - reciprocal meiotic recombination [Evidence IBA]; GO_process: GO:0009411 - response to UV [Evidence IBA]; mismatch repair ATPase MSH6 4680886 MSH6 30033313 MSH6 Sugiyamaella lignohabitans mismatch repair ATPase MSH6 XP_018735698.1 4677812 R 796027 CDS AWJ20_1504 30033314 complement(4682483..4683169) A 1 NC_031672.1 Mitochondrial adenylate kinase; catalyzes the reversible synthesis of GTP and AMP from GDP and ADP; may serve as a back-up for synthesizing GTP or ADP depending on metabolic conditions; 3' sequence of ADK2 varies with strain background; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IDA] [PMID 15753074]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IDA] [PMID 8537371]; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA]; GO_component: GO:0005759 - mitochondrial matrix [Evidence IDA] [PMID 8537371]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0005525 - GTP binding [Evidence IEA]; GO_function: GO:0004017 - adenylate kinase activity [Evidence IEA]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0019205 - nucleobase-containing compound kinase activity [Evidence IEA]; GO_function: GO:0046899 - nucleoside triphosphate adenylate kinase activity [Evidence IEA]; GO_function: GO:0046899 - nucleoside triphosphate adenylate kinase activity [Evidence IDA] [PMID 15753074]; GO_function: GO:0046899 - nucleoside triphosphate adenylate kinase activity [Evidence IDA] [PMID 8537371]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016776 - phosphotransferase activity, phosphate group as acceptor [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006139 - nucleobase-containing compound metabolic process [Evidence IEA]; GO_process: GO:0009117 - nucleotide metabolic process [Evidence IDA] [PMID 15753074]; GO_process: GO:0046939 - nucleotide phosphorylation [Evidence IEA]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; adenylate kinase ADK2 4683169 ADK2 30033314 ADK2 Sugiyamaella lignohabitans adenylate kinase ADK2 XP_018735699.1 4682483 R 796027 CDS AWJ20_1505 30033315 complement(4684160..4684957) A 1 NC_031672.1 Putative transmembrane protein involved in export of ammonia; ammonia is a starvation signal that promotes cell death in aging colonies; phosphorylated in mitochondria; member of the TC 9.B.33 YaaH family; homolog of Y. lipolytica Gpr1p; ATO2 has a paralog, ADY2, that arose from the whole genome duplication; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 17395151]; GO_function: GO:0008519 - ammonium transmembrane transporter activity [Evidence IMP] [PMID 12429834]; GO_process: GO:0015696 - ammonium transport [Evidence IEA]; GO_process: GO:0015696 - ammonium transport [Evidence IEP,IMP] [PMID 12429834]; GO_process: GO:0006811 - ion transport [Evidence IEA]; GO_process: GO:0019740 - nitrogen utilization [Evidence IMP] [PMID 12429834]; GO_process: GO:0006810 - transport [Evidence IEA]; putative ammonium permease ATO2 4684957 ATO2 30033315 ATO2 Sugiyamaella lignohabitans putative ammonium permease ATO2 XP_018735700.1 4684160 R 796027 CDS AWJ20_1506 30033316 complement(4685811..4687316) A 1 NC_031672.1 High affinity nicotinic acid plasma membrane permease; responsible for uptake of low levels of nicotinic acid; expression of the gene increases in the absence of extracellular nicotinic acid or para-aminobenzoate (PABA); GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0005887 - integral component of plasma membrane [Evidence ISS] [PMID 9678606]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0015663 - nicotinamide mononucleotide transmembrane transporter activity [Evidence IMP] [PMID 10869563]; GO_process: GO:0015890 - nicotinamide mononucleotide transport [Evidence IEP,IMP] [PMID 10869563]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Tna1p 4687316 TNA1 30033316 TNA1 Sugiyamaella lignohabitans Tna1p XP_018735701.1 4685811 R 796027 CDS AWJ20_1507 30033317 4692800..4694827 A 1 NC_031672.1 HLH transcription factor (PalcA) 4694827 30033317 AWJ20_1507 Sugiyamaella lignohabitans HLH transcription factor (PalcA) XP_018735702.1 4692800 D 796027 CDS AWJ20_1508 30033318 complement(4695092..4696510) A 1 NC_031672.1 Transcription factor IIIA (TFIIIA); essential DNA binding protein required for transcription of 5S rRNA by RNA polymerase III; not involved in transcription of other RNAP III genes; nine conserved zinc fingers; may also bind 5S rRNA; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IC] [PMID 2642897]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0001002 - RNA polymerase III type 1 promoter sequence-specific DNA binding [Evidence IDA] [PMID 2642897]; GO_function: GO:0001152 - RNA polymerase III type 1 promoter sequence-specific DNA binding TFIIIC recruiting transcription factor activity [Evidence IDA,IMP] [PMID 8496187]; GO_function: GO:0001156 - TFIIIC-class transcription factor binding [Evidence IC] [PMID 8496187]; GO_function: GO:0046872 - metal ion binding [Evidence IEA,IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_process: GO:0042791 - 5S class rRNA transcription from RNA polymerase III type 1 promoter [Evidence IDA] [PMID 2642897]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Pzf1p 4696510 PZF1 30033318 PZF1 Sugiyamaella lignohabitans Pzf1p XP_018735703.1 4695092 R 796027 CDS AWJ20_1509 30033319 4698684..4702139 A 1 NC_031672.1 uncharacterized protein 4702139 30033319 AWJ20_1509 Sugiyamaella lignohabitans uncharacterized protein XP_018735704.1 4698684 D 796027 CDS AWJ20_1510 30033321 complement(4702453..4703166) A 1 NC_031672.1 top hit is XP_007271903.1 originated in Fomitiporia mediterranea MF3/22; translin 4703166 tsn1 30033321 tsn1 Sugiyamaella lignohabitans translin XP_018735705.1 4702453 R 796027 CDS AWJ20_1511 30033322 4704588..4705757 A 1 NC_031672.1 Mitochondrial cytochrome-c peroxidase; degrades reactive oxygen species in mitochondria, involved in the response to oxidative stress; GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IDA] [PMID 6290489]; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 11914276]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0004130 - cytochrome-c peroxidase activity [Evidence IEA]; GO_function: GO:0004130 - cytochrome-c peroxidase activity [Evidence IMP] [PMID 10589830]; GO_function: GO:0004130 - cytochrome-c peroxidase activity [Evidence IDA] [PMID 17580971]; GO_function: GO:0004130 - cytochrome-c peroxidase activity [Evidence IDA,IMP] [PMID 21334283]; GO_function: GO:0020037 - heme binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0004601 - peroxidase activity [Evidence IEA,IEA]; GO_process: GO:0034599 - cellular response to oxidative stress [Evidence IMP] [PMID 10589830]; GO_process: GO:0042744 - hydrogen peroxide catabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0006979 - response to oxidative stress [Evidence IEA]; Ccp1p 4705757 CCP1 30033322 CCP1 Sugiyamaella lignohabitans Ccp1p XP_018735706.1 4704588 D 796027 CDS AWJ20_1512 30033323 complement(4705956..4706711) A 1 NC_031672.1 Constituent of the TIM23 complex; proposed alternatively to be a component of the import motor (PAM complex) or to interact with and modulate the core TIM23 (Translocase of the Inner mitochondrial Membrane) complex; protein abundance increases in response to DNA replication stress; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0001405 - presequence translocase-associated import motor [Evidence IDA] [PMID 16107694]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0030150 - protein import into mitochondrial matrix [Evidence IMP] [PMID 16107694]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Pam17p 4706711 PAM17 30033323 PAM17 Sugiyamaella lignohabitans Pam17p XP_018735707.1 4705956 R 796027 CDS AWJ20_1513 30033324 complement(4708215..4709246) A 1 NC_031672.1 NAD-dependent glycerol 3-phosphate dehydrogenase; expression is controlled by an oxygen-independent signaling pathway required to regulate metabolism under anoxic conditions; located in cytosol and mitochondria; constitutively active but is inactivated via phosphorylation by energy-stress responsive kinase SNF1; GPD2 has a paralog, GPD1, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence TAS] [PMID 10781551]; GO_component: GO:0009331 - glycerol-3-phosphate dehydrogenase complex [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 17054397]; GO_function: GO:0051287 - NAD binding [Evidence IEA]; GO_function: GO:0050662 - coenzyme binding [Evidence IEA]; GO_function: GO:0004367 - glycerol-3-phosphate dehydrogenase [NAD+] activity [Evidence IEA,IEA]; GO_function: GO:0004367 - glycerol-3-phosphate dehydrogenase [NAD+] activity [Evidence IMP] [PMID 9171333]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor [Evidence IEA]; GO_function: GO:0042803 - protein homodimerization activity [Evidence IEA]; GO_process: GO:0006116 - NADH oxidation [Evidence IMP] [PMID 9171333]; GO_process: GO:0005975 - carbohydrate metabolic process [Evidence IEA]; GO_process: GO:0006071 - glycerol metabolic process [Evidence IMP] [PMID 9171333]; GO_process: GO:0046168 - glycerol-3-phosphate catabolic process [Evidence IEA]; GO_process: GO:0006072 - glycerol-3-phosphate metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; glycerol-3-phosphate dehydrogenase (NAD(+)) GPD2 4709246 GPD2 30033324 GPD2 Sugiyamaella lignohabitans glycerol-3-phosphate dehydrogenase (NAD(+)) GPD2 XP_018735708.1 4708215 R 796027 CDS AWJ20_1514 30033325 complement(4713117..4716059) A 1 NC_031672.1 uncharacterized protein 4716059 30033325 AWJ20_1514 Sugiyamaella lignohabitans uncharacterized protein XP_018735709.1 4713117 R 796027 CDS AWJ20_1515 30033326 4719038..4721731 A 1 NC_031672.1 uncharacterized protein 4721731 30033326 AWJ20_1515 Sugiyamaella lignohabitans uncharacterized protein XP_018735710.1 4719038 D 796027 CDS AWJ20_1516 30033327 complement(4722776..4725556) A 1 NC_031672.1 uncharacterized protein 4725556 30033327 AWJ20_1516 Sugiyamaella lignohabitans uncharacterized protein XP_018735711.1 4722776 R 796027 CDS AWJ20_1517 30033328 complement(4726237..4726962) A 1 NC_031672.1 tRNA 2'-phosphotransferase; catalyzes the final step in yeast tRNA splicing: the transfer of the 2'-PO(4) from the splice junction to NAD(+) to form ADP-ribose 1''-2''cyclic phosphate and nicotinamide; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22391451]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22391451]; GO_function: GO:0000215 - tRNA 2'-phosphotransferase activity [Evidence IEA]; GO_function: GO:0000215 - tRNA 2'-phosphotransferase activity [Evidence IDA] [PMID 9148937]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016772 - transferase activity, transferring phosphorus-containing groups [Evidence IEA]; GO_process: GO:0008033 - tRNA processing [Evidence IEA]; GO_process: GO:0006388 - tRNA splicing, via endonucleolytic cleavage and ligation [Evidence IEA]; GO_process: GO:0006388 - tRNA splicing, via endonucleolytic cleavage and ligation [Evidence IDA] [PMID 9148937]; Tpt1p 4726962 TPT1 30033328 TPT1 Sugiyamaella lignohabitans Tpt1p XP_018735712.1 4726237 R 796027 CDS AWJ20_1518 30033329 join(4728767..4728886,4729011..4732964) A 1 NC_031672.1 ATPase component of the RSC chromatin remodeling complex; required for expression of early meiotic genes; promotes base excision repair in chromatin; essential helicase-related protein homologous to Snf2p; GO_component: GO:0016586 - RSC complex [Evidence IDA] [PMID 10619019]; GO_component: GO:0016586 - RSC complex [Evidence IDA] [PMID 12183366]; GO_component: GO:0016586 - RSC complex [Evidence IDA] [PMID 8980231]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 1396591]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 1549132]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0015616 - DNA translocase activity [Evidence IDA] [PMID 12183366]; GO_function: GO:0015616 - DNA translocase activity [Evidence IDA] [PMID 16455496]; GO_function: GO:0015616 - DNA translocase activity [Evidence IDA] [PMID 17188033]; GO_function: GO:0015616 - DNA translocase activity [Evidence IDA] [PMID 17918861]; GO_function: GO:0008094 - DNA-dependent ATPase activity [Evidence IDA] [PMID 12183366]; GO_function: GO:0008094 - DNA-dependent ATPase activity [Evidence IDA] [PMID 9799253]; GO_function: GO:0004386 - helicase activity [Evidence IEA,IEA]; GO_function: GO:0004386 - helicase activity [Evidence IDA] [PMID 12183366]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0070577 - lysine-acetylated histone binding [Evidence IDA] [PMID 20126658]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0043044 - ATP-dependent chromatin remodeling [Evidence IDA] [PMID 10025404]; GO_process: GO:0043044 - ATP-dependent chromatin remodeling [Evidence IDA] [PMID 12183366]; GO_process: GO:0043044 - ATP-dependent chromatin remodeling [Evidence IDA] [PMID 8980231]; GO_process: GO:0000086 - G2/M transition of mitotic cell cycle [Evidence IMP] [PMID 9799253]; GO_process: GO:0006284 - base-excision repair [Evidence IMP] [PMID 24674626]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0016568 - chromatin modification [Evidence IEA]; GO_process: GO:0031055 - chromatin remodeling at centromere [Evidence IMP] [PMID 12697820]; GO_process: GO:0007059 - chromosome segregation [Evidence IGI] [PMID 12697820]; GO_process: GO:0007010 - cytoskeleton organization [Evidence IGI,IMP] [PMID 12072455]; GO_process: GO:0006302 - double-strand break repair [Evidence IMP] [PMID 16024655]; GO_process: GO:0007126 - meiotic nuclear division [Evidence IMP] [PMID 10320476]; GO_process: GO:0006337 - nucleosome disassembly [Evidence IDA] [PMID 16492771]; GO_process: GO:0016584 - nucleosome positioning [Evidence IMP] [PMID 21343911]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IMP] [PMID 10320476]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IMP] [PMID 10329629]; GO_process: GO:0006368 - transcription elongation from RNA polymerase II promoter [Evidence IDA] [PMID 17081996]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; GO_process: GO:0061587 - transfer RNA gene-mediated silencing [Evidence IMP] [PMID 23707796]; RSC chromatin remodeling complex ATPase subunit STH1 4732964 STH1 30033329 STH1 Sugiyamaella lignohabitans RSC chromatin remodeling complex ATPase subunit STH1 XP_018735713.1 4728767 D 796027 CDS AWJ20_1519 30033330 4734447..4737146 A 1 NC_031672.1 Arf family guanine nucleotide exchange factor SYT1 4737146 SYT1 30033330 SYT1 Sugiyamaella lignohabitans Arf family guanine nucleotide exchange factor SYT1 XP_018735714.1 4734447 D 796027 CDS AWJ20_1520 30033332 4737291..4739210 A 1 NC_031672.1 uncharacterized protein 4739210 30033332 AWJ20_1520 Sugiyamaella lignohabitans uncharacterized protein XP_018735715.1 4737291 D 796027 CDS AWJ20_1521 30033333 complement(4739510..4740808) A 1 NC_031672.1 hypothetical protein; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; Dos2p 4740808 DOS2 30033333 DOS2 Sugiyamaella lignohabitans Dos2p XP_018735716.1 4739510 R 796027 CDS AWJ20_1522 30033334 4741312..4741986 A 1 NC_031672.1 Cytoplasmic protein required for replication of Brome mosaic virus; S. cerevisiae is a model system for studying positive-strand RNA virus replication; null mutation confers sensitivity to tunicamycin and DTT; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0004721 - phosphoprotein phosphatase activity [Evidence IEA]; GO_function: GO:0004725 - protein tyrosine phosphatase activity [Evidence IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0016311 - dephosphorylation [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0035335 - peptidyl-tyrosine dephosphorylation [Evidence IEA]; Oca6p 4741986 OCA6 30033334 OCA6 Sugiyamaella lignohabitans Oca6p XP_018735717.1 4741312 D 796027 CDS AWJ20_1523 30033335 complement(4742679..4744685) A 1 NC_031672.1 Mitochondrial glycerol-3-phosphate dehydrogenase; expression is repressed by both glucose and cAMP and derepressed by non-fermentable carbon sources in a Snf1p, Rsf1p, Hap2/3/4/5 complex dependent manner; GO_component: GO:0009331 - glycerol-3-phosphate dehydrogenase complex [Evidence IEA]; GO_component: GO:0031307 - integral component of mitochondrial outer membrane [Evidence IDA] [PMID 16689936]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 11502169]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IMP,ISS] [PMID 8256521]; GO_function: GO:0004368 - glycerol-3-phosphate dehydrogenase activity [Evidence IEA,IEA]; GO_function: GO:0004368 - glycerol-3-phosphate dehydrogenase activity [Evidence IDA] [PMID 12032156]; GO_function: GO:0004368 - glycerol-3-phosphate dehydrogenase activity [Evidence IMP,ISS] [PMID 8256521]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0052590 - sn-glycerol-3-phosphate:ubiquinone oxidoreductase activity [Evidence IEA]; GO_function: GO:0052591 - sn-glycerol-3-phosphate:ubiquinone-8 oxidoreductase activity [Evidence IEA]; GO_process: GO:0006116 - NADH oxidation [Evidence IDA] [PMID 12032156]; GO_process: GO:0019563 - glycerol catabolic process [Evidence IEA]; GO_process: GO:0006071 - glycerol metabolic process [Evidence IMP] [PMID 8256521]; GO_process: GO:0006072 - glycerol-3-phosphate metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0001302 - replicative cell aging [Evidence IMP] [PMID 18381895]; glycerol-3-phosphate dehydrogenase 4744685 GUT2 30033335 GUT2 Sugiyamaella lignohabitans glycerol-3-phosphate dehydrogenase XP_018735718.1 4742679 R 796027 CDS AWJ20_1524 30033336 4746538..4747062 A 1 NC_031672.1 uncharacterized protein 4747062 30033336 AWJ20_1524 Sugiyamaella lignohabitans uncharacterized protein XP_018735719.1 4746538 D 796027 CDS AWJ20_1525 30033337 4748071..4749864 A 1 NC_031672.1 Myb-related transcription factor; involved in regulating basal and induced expression of genes of the purine and histidine biosynthesis pathways; also involved in regulation of meiotic recombination at specific genes; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9705508]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0001135 - RNA polymerase II transcription factor recruiting transcription factor activity [Evidence IDA,IMP] [PMID 16215179]; GO_function: GO:0003682 - chromatin binding [Evidence IEA]; GO_function: GO:0001046 - core promoter sequence-specific DNA binding [Evidence IDA] [PMID 1495962]; GO_function: GO:0001046 - core promoter sequence-specific DNA binding [Evidence IDA] [PMID 2683089]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19158363]; GO_function: GO:0000981 - sequence-specific DNA binding RNA polymerase II transcription factor activity [Evidence IDA,IMP] [PMID 1495962]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IDA,IMP] [PMID 1495962]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IGI,IMP] [PMID 3303332]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Bas1p 4749864 BAS1 30033337 BAS1 Sugiyamaella lignohabitans Bas1p XP_018735720.1 4748071 D 796027 CDS AWJ20_1526 30033338 complement(4750247..4750939) A 1 NC_031672.1 Polyamine acetyltransferase; acetylates polyamines (e.g. putrescine, spermidine, spermine) and also aralkylamines (e.g. tryptamine, phenylethylamine); may be involved in transcription and/or DNA replication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0008080 - N-acetyltransferase activity [Evidence IEA]; GO_function: GO:0004059 - aralkylamine N-acetyltransferase activity [Evidence IDA] [PMID 11559708]; GO_function: GO:0004145 - diamine N-acetyltransferase activity [Evidence IDA,IMP] [PMID 15723835]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016746 - transferase activity, transferring acyl groups [Evidence IEA]; GO_process: GO:0006325 - chromatin organization [Evidence IMP] [PMID 15723835]; GO_process: GO:0008152 - metabolic process [Evidence IEA,IEA]; Paa1p 4750939 PAA1 30033338 PAA1 Sugiyamaella lignohabitans Paa1p XP_018735721.1 4750247 R 796027 CDS AWJ20_1527 30033339 4758492..4759784 A 1 NC_031672.1 DNA damage-inducible v-SNARE binding protein; role in suppression of protein secretion; may play a role in S-phase checkpoint control; has ubiquitin-associated (UBA), ubiquitin-like (UBL), and retroviral-like proteinase (RVP) domains; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 10330187]; GO_function: GO:0000149 - SNARE binding [Evidence IDA] [PMID 10330187]; GO_function: GO:0004190 - aspartic-type endopeptidase activity [Evidence IEA]; GO_function: GO:0004190 - aspartic-type endopeptidase activity [Evidence ISA] [PMID 11516960]; GO_function: GO:0043130 - ubiquitin binding [Evidence IDA] [PMID 11323716]; GO_process: GO:0009306 - protein secretion [Evidence IMP] [PMID 21094643]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006508 - proteolysis [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0006511 - ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 12051757]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IGI,IMP] [PMID 10330187]; Ddi1p 4759784 DDI1 30033339 DDI1 Sugiyamaella lignohabitans Ddi1p XP_018735722.1 4758492 D 796027 CDS AWJ20_1528 30033340 complement(4760072..4761526) A 1 NC_031672.1 Histone-lysine N-methyltransferase MLL3 4761526 GLN3 30033340 GLN3 Sugiyamaella lignohabitans Histone-lysine N-methyltransferase MLL3 XP_018735723.1 4760072 R 796027 CDS AWJ20_1529 30033341 4764313..4767096 A 1 NC_031672.1 Transcriptional activator; binds specific gene recruitment sequences and is required for DNA zip code-mediated targeting of genes to nuclear periphery; regulates proline utilization genes, constitutively binds PUT1 and PUT2 promoters as a dimer, undergoes conformational change to form active state; binds other promoters only under activating conditions; differentially phosphorylated in presence of different nitrogen sources; has a Zn(2)-Cys(6) binuclear cluster domain; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IC] [PMID 1986247]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0000978 - RNA polymerase II core promoter proximal region sequence-specific DNA binding [Evidence IDA] [PMID 1986247]; GO_function: GO:0000978 - RNA polymerase II core promoter proximal region sequence-specific DNA binding [Evidence IDA] [PMID 8846888]; GO_function: GO:0001077 - RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription [Evidence IMP] [PMID 8846888]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19111667]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19158363]; GO_function: GO:0000981 - sequence-specific DNA binding RNA polymerase II transcription factor activity [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:2001158 - positive regulation of proline catabolic process to glutamate [Evidence IMP] [PMID 2689862]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 2689862]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 8846888]; GO_process: GO:0006560 - proline metabolic process [Evidence IEA]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA,IEA]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA,IEA]; GO_process: GO:0000972 - transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery [Evidence IMP] [PMID 22579222]; Put3p 4767096 PUT3 30033341 PUT3 Sugiyamaella lignohabitans Put3p XP_018735724.1 4764313 D 796027 CDS AWJ20_1530 30033343 complement(4767160..4768380) A 1 NC_031672.1 Protein required for the normal accumulation of 25S and 5.8S rRNAs; nucleolar protein; associated with the 27SA2 pre-ribosomal particle; proposed to be involved in the biogenesis of the 60S ribosomal subunit; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 15208443]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 22842922]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_process: GO:0000466 - maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 15208443]; GO_process: GO:0000463 - maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 15208443]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; Urb1p 4768380 URB1 30033343 URB1 Sugiyamaella lignohabitans Urb1p XP_018735725.1 4767160 R 796027 CDS AWJ20_1531 30033344 complement(4768652..4771975) A 1 NC_031672.1 Protein required for the normal accumulation of 25S and 5.8S rRNAs; nucleolar protein; associated with the 27SA2 pre-ribosomal particle; proposed to be involved in the biogenesis of the 60S ribosomal subunit; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 15208443]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 22842922]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_process: GO:0000466 - maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 15208443]; GO_process: GO:0000463 - maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 15208443]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; Urb1p 4771975 URB1 30033344 URB1 Sugiyamaella lignohabitans Urb1p XP_018735726.1 4768652 R 796027 CDS AWJ20_1532 30033345 4772351..4773367 A 1 NC_031672.1 Essential nucleolar protein involved in pre-18S rRNA processing; binds to RNA and stimulates ATPase activity of Dbp8; involved in assembly of the small subunit (SSU) processome; GO_component: GO:0030686 - 90S preribosome [Evidence IDA] [PMID 15964808]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 15964808]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 15964808]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_function: GO:0001671 - ATPase activator activity [Evidence IDA] [PMID 16772403]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IDA] [PMID 16772403]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0000480 - endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 15964808]; GO_process: GO:0000447 - endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 15964808]; GO_process: GO:0000472 - endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 15964808]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; GO_process: GO:0034462 - small-subunit processome assembly [Evidence IMP] [PMID 15964808]; Esf2p 4773367 ESF2 30033345 ESF2 Sugiyamaella lignohabitans Esf2p XP_018735727.1 4772351 D 796027 CDS AWJ20_1533 30033346 complement(4773412..4774896) A 1 NC_031672.1 Protein required for beta-1,6 glucan biosynthesis; mutations result in aberrant morphology and severe growth defects; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence TAS] [PMID 10601196]; GO_component: GO:0005788 - endoplasmic reticulum lumen [Evidence IEA]; GO_function: GO:0003980 - UDP-glucose:glycoprotein glucosyltransferase activity [Evidence IEA]; GO_function: GO:0003980 - UDP-glucose:glycoprotein glucosyltransferase activity [Evidence IDA] [PMID 9611196]; GO_process: GO:0006078 - (1->6)-beta-D-glucan biosynthetic process [Evidence TAS] [PMID 8550469]; GO_process: GO:0097359 - UDP-glucosylation [Evidence IEA]; GO_process: GO:0006486 - protein glycosylation [Evidence IEA]; Kre5p 4774896 KRE5 30033346 KRE5 Sugiyamaella lignohabitans Kre5p XP_018735728.1 4773412 R 796027 CDS AWJ20_1534 30033347 complement(4775348..4778008) A 1 NC_031672.1 uncharacterized protein 4778008 30033347 AWJ20_1534 Sugiyamaella lignohabitans uncharacterized protein XP_018735729.1 4775348 R 796027 CDS AWJ20_1535 30033348 complement(4778318..4781014) A 1 NC_031672.1 3'-5' exoribonuclease; component of the mitochondrial degradosome along with the ATP-dependent RNA helicase Suv3p; the degradosome associates with the ribosome and mediates turnover of aberrant or unprocessed RNAs; GO_component: GO:0045025 - mitochondrial degradosome [Evidence IDA] [PMID 12426313]; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0004527 - exonuclease activity [Evidence IEA]; GO_function: GO:0008859 - exoribonuclease II activity [Evidence IEA]; GO_function: GO:0008859 - exoribonuclease II activity [Evidence IDA] [PMID 12426313]; GO_function: GO:0008859 - exoribonuclease II activity [Evidence IDA] [PMID 17658549]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0004518 - nuclease activity [Evidence IEA]; GO_process: GO:0090503 - RNA phosphodiester bond hydrolysis, exonucleolytic [Evidence IEA]; GO_process: GO:0000957 - mitochondrial RNA catabolic process [Evidence IMP] [PMID 12426313]; GO_process: GO:0000957 - mitochondrial RNA catabolic process [Evidence IMP] [PMID 9829834]; GO_process: GO:0090305 - nucleic acid phosphodiester bond hydrolysis [Evidence IEA]; Dss1p 4781014 DSS1 30033348 DSS1 Sugiyamaella lignohabitans Dss1p XP_018735730.1 4778318 R 796027 CDS AWJ20_1536 30033349 complement(4781524..4782279) A 1 NC_031672.1 Cytoplasmic inorganic pyrophosphatase (PPase); homodimer that catalyzes the rapid exchange of oxygens from Pi with water, highly expressed and essential for viability, active-site residues show identity to those from E. coli PPase; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0004427 - inorganic diphosphatase activity [Evidence IEA,IEA]; GO_function: GO:0004427 - inorganic diphosphatase activity [Evidence IDA] [PMID 8224193]; GO_function: GO:0000287 - magnesium ion binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_process: GO:0006796 - phosphate-containing compound metabolic process [Evidence IEA]; GO_process: GO:0006796 - phosphate-containing compound metabolic process [Evidence IC] [PMID 8224193]; inorganic diphosphatase IPP1 4782279 IPP1 30033349 IPP1 Sugiyamaella lignohabitans inorganic diphosphatase IPP1 XP_018735731.1 4781524 R 796027 CDS AWJ20_1537 30033350 complement(4783701..4786376) A 1 NC_031672.1 uncharacterized protein 4786376 30033350 AWJ20_1537 Sugiyamaella lignohabitans uncharacterized protein XP_018735732.1 4783701 R 796027 CDS AWJ20_1538 30033351 complement(4791664..4792233) A 1 NC_031672.1 D-ribulose-5-phosphate 3-epimerase; catalyzes a reaction in the non-oxidative part of the pentose-phosphate pathway; mutants are sensitive to oxidative stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence TAS] [PMID 11298766]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016853 - isomerase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016857 - racemase and epimerase activity, acting on carbohydrates and derivatives [Evidence IEA]; GO_function: GO:0004750 - ribulose-phosphate 3-epimerase activity [Evidence IEA,IEA]; GO_function: GO:0004750 - ribulose-phosphate 3-epimerase activity [Evidence IDA,IMP,ISS] [PMID 8929392]; GO_process: GO:0005975 - carbohydrate metabolic process [Evidence IEA,IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0006098 - pentose-phosphate shunt [Evidence IEA,IEA]; GO_process: GO:0006098 - pentose-phosphate shunt [Evidence IMP] [PMID 8929392]; ribulose-phosphate 3-epimerase RPE1 4792233 RPE1 30033351 RPE1 Sugiyamaella lignohabitans ribulose-phosphate 3-epimerase RPE1 XP_018735733.1 4791664 R 796027 CDS AWJ20_1541 30033355 4800562..4801185 A 1 NC_031672.1 uncharacterized protein 4801185 30033355 AWJ20_1541 Sugiyamaella lignohabitans uncharacterized protein XP_018735734.1 4800562 D 796027 CDS AWJ20_1542 30033356 complement(4801563..4802747) A 1 NC_031672.1 Dsc3p 4802747 30033356 AWJ20_1542 Sugiyamaella lignohabitans Dsc3p XP_018735735.1 4801563 R 796027 CDS AWJ20_1543 30033357 4803485..4805113 A 1 NC_031672.1 uncharacterized protein 4805113 30033357 AWJ20_1543 Sugiyamaella lignohabitans uncharacterized protein XP_018735736.1 4803485 D 796027 CDS AWJ20_1544 30033358 complement(4805222..4806028) A 1 NC_031672.1 Mitochondrial inner membrane transporter; exports 2-oxoadipate and 2-oxoglutarate from the mitochondrial matrix to the cytosol for lysine and glutamate biosynthesis and lysine catabolism; suppresses, in multicopy, an fmc1 null mutation; ODC1 has a paralog, ODC2, that arose from the whole genome duplication; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA,IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IDA] [PMID 11013234]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 9178508]; GO_function: GO:0005310 - dicarboxylic acid transmembrane transporter activity [Evidence IDA] [PMID 11013234]; GO_function: GO:0005215 - transporter activity [Evidence IEA]; GO_process: GO:0006839 - mitochondrial transport [Evidence IDA] [PMID 11013234]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; Odc1p 4806028 ODC1 30033358 ODC1 Sugiyamaella lignohabitans Odc1p XP_018735737.1 4805222 R 796027 CDS AWJ20_1545 30033359 complement(4807215..4809335) A 1 NC_031672.1 DNA helicase involved in rDNA replication and Ty1 transposition; binds to and suppresses DNA damage at G4 motifs in vivo; relieves replication fork pauses at telomeric regions; structurally and functionally related to Pif1p; GO_component: GO:0005694 - chromosome [Evidence IEA]; GO_component: GO:0000781 - chromosome, telomeric region [Evidence IEA,IEA]; GO_component: GO:0005724 - nuclear telomeric heterochromatin [Evidence IEA,IEA]; GO_component: GO:0005724 - nuclear telomeric heterochromatin [Evidence IPI] [PMID 10693764]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005657 - replication fork [Evidence IEA,IEA]; GO_component: GO:0005657 - replication fork [Evidence IDA,IMP] [PMID 17114583]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0043141 - ATP-dependent 5'-3' DNA helicase activity [Evidence IEA]; GO_function: GO:0004003 - ATP-dependent DNA helicase activity [Evidence IEA]; GO_function: GO:0004003 - ATP-dependent DNA helicase activity [Evidence IDA] [PMID 12050116]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0003678 - DNA helicase activity [Evidence IEA]; GO_function: GO:0003678 - DNA helicase activity [Evidence IMP,ISS] [PMID 10693764]; GO_function: GO:0051880 - G-quadruplex DNA binding [Evidence IEA]; GO_function: GO:0004386 - helicase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_process: GO:0032508 - DNA duplex unwinding [Evidence IEA,IEA]; GO_process: GO:0006281 - DNA repair [Evidence IEA,IEA,IEA]; GO_process: GO:0006260 - DNA replication [Evidence IEA,IEA]; GO_process: GO:0006260 - DNA replication [Evidence IGI,IMP,IPI] [PMID 10693764]; GO_process: GO:0044806 - G-quadruplex DNA unwinding [Evidence IMP] [PMID 23657261]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0000002 - mitochondrial genome maintenance [Evidence IEA]; GO_process: GO:0000002 - mitochondrial genome maintenance [Evidence IGI] [PMID 15907372]; GO_process: GO:0097046 - replication fork progression beyond termination site [Evidence IMP] [PMID 20797631]; GO_process: GO:0000723 - telomere maintenance [Evidence IEA]; Rrm3p 4809335 RRM3 30033359 RRM3 Sugiyamaella lignohabitans Rrm3p XP_018735738.1 4807215 R 796027 CDS AWJ20_1546 30033360 complement(4809733..4810926) A 1 NC_031672.1 Subunit of mitochondrial NAD(+)-dependent isocitrate dehydrogenase; complex catalyzes the oxidation of isocitrate to alpha-ketoglutarate in the TCA cycle; GO_component: GO:0005962 - mitochondrial isocitrate dehydrogenase complex (NAD+) [Evidence IDA] [PMID 16884682]; GO_component: GO:0005759 - mitochondrial matrix [Evidence IDA] [PMID 8626605]; GO_component: GO:0042645 - mitochondrial nucleoid [Evidence IDA] [PMID 15692048]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0051287 - NAD binding [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0004449 - isocitrate dehydrogenase (NAD+) activity [Evidence IEA,IEA]; GO_function: GO:0004449 - isocitrate dehydrogenase (NAD+) activity [Evidence IDA] [PMID 16884682]; GO_function: GO:0000287 - magnesium ion binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor [Evidence IEA]; GO_process: GO:0006537 - glutamate biosynthetic process [Evidence TAS] [PMID 9175438]; GO_process: GO:0006102 - isocitrate metabolic process [Evidence IDA] [PMID 16884682]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0006099 - tricarboxylic acid cycle [Evidence IEA,IEA]; GO_process: GO:0006099 - tricarboxylic acid cycle [Evidence TAS] [PMID 9175438]; isocitrate dehydrogenase (NAD(+)) IDH1 4810926 IDH1 30033360 IDH1 Sugiyamaella lignohabitans isocitrate dehydrogenase (NAD(+)) IDH1 XP_018735739.1 4809733 R 796027 CDS AWJ20_1547 30033361 4812714..4813121 A 1 NC_031672.1 uncharacterized protein 4813121 30033361 AWJ20_1547 Sugiyamaella lignohabitans uncharacterized protein XP_018735740.1 4812714 D 796027 CDS AWJ20_1548 30033362 complement(4813296..4815368) A 1 NC_031672.1 Essential nucleolar protein; required for biogenesis of the small ribosomal subunit; contains WD repeats, interacts with Mpp10p and Bfr2p, and has homology to Spb1p; GO_component: GO:0030686 - 90S preribosome [Evidence IDA] [PMID 12150911]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 14690591]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 15590835]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0006364 - rRNA processing [Evidence IPI] [PMID 14690591]; GO_process: GO:0042274 - ribosomal small subunit biogenesis [Evidence IMP] [PMID 19806183]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; Enp2p 4815368 ENP2 30033362 ENP2 Sugiyamaella lignohabitans Enp2p XP_018735741.1 4813296 R 796027 CDS AWJ20_1549 30033363 complement(4816379..4817002) A 1 NC_031672.1 uncharacterized protein 4817002 30033363 AWJ20_1549 Sugiyamaella lignohabitans uncharacterized protein XP_018735742.1 4816379 R 796027 CDS AWJ20_1550 30033365 4818600..4820825 A 1 NC_031672.1 uncharacterized protein 4820825 30033365 AWJ20_1550 Sugiyamaella lignohabitans uncharacterized protein XP_018735743.1 4818600 D 796027 CDS AWJ20_1551 30033366 4821173..4823281 A 1 NC_031672.1 uncharacterized protein 4823281 30033366 AWJ20_1551 Sugiyamaella lignohabitans uncharacterized protein XP_018735744.1 4821173 D 796027 CDS AWJ20_1552 30033367 complement(4823432..4824169) A 1 NC_031672.1 Bifunctional triacylglycerol lipase and 1-acyl DHAP reductase; NADPH-dependent 1-acyl dihydroxyacetone phosphate reductase involved in phosphatidic acid biosynthesis; lipid droplet triacylglycerol lipase involved in the mobilization of non-polar lipids; found in lipid particles, the endoplasmic reticulum and the mitochondrial outer membrane; required for spore germination; role in cell wall biosynthesis; capable of metabolizing steroid hormones; oleic acid inducible; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA,IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 10617610]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0005811 - lipid particle [Evidence IEA,IEA]; GO_component: GO:0005811 - lipid particle [Evidence IDA] [PMID 10617610]; GO_component: GO:0005811 - lipid particle [Evidence IDA] [PMID 24868093]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IDA] [PMID 16407407]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0000140 - acylglycerone-phosphate reductase activity [Evidence IEA]; GO_function: GO:0000140 - acylglycerone-phosphate reductase activity [Evidence IMP] [PMID 10617610]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0004806 - triglyceride lipase activity [Evidence IDA,IGI,IMP] [PMID 24187129]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; GO_process: GO:0006654 - phosphatidic acid biosynthetic process [Evidence IMP] [PMID 10617610]; GO_process: GO:0019433 - triglyceride catabolic process [Evidence IGI] [PMID 24187129]; acylglycerone-phosphate reductase 4824169 AYR1 30033367 AYR1 Sugiyamaella lignohabitans acylglycerone-phosphate reductase XP_018735745.1 4823432 R 796027 CDS AWJ20_1553 30033368 4826260..4827318 A 1 NC_031672.1 Essential protein that interacts with proteasome components; has a potential role in proteasome substrate specificity; also copurifies with 66S pre-ribosomal particles; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 11500370]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 11583614]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 17443350]; GO_component: GO:0000502 - proteasome complex [Evidence IEA]; GO_component: GO:0000502 - proteasome complex [Evidence IDA,IPI] [PMID 11500370]; GO_function: GO:0030674 - protein binding, bridging [Evidence IMP,IPI] [PMID 11500370]; GO_process: GO:0030163 - protein catabolic process [Evidence IEA]; GO_process: GO:0030163 - protein catabolic process [Evidence IDA,IMP,IPI] [PMID 11500370]; GO_process: GO:0042273 - ribosomal large subunit biogenesis [Evidence IEA]; GO_process: GO:0042273 - ribosomal large subunit biogenesis [Evidence IPI] [PMID 15100437]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; Cic1p 4827318 CIC1 30033368 CIC1 Sugiyamaella lignohabitans Cic1p XP_018735746.1 4826260 D 796027 CDS AWJ20_1554 30033369 complement(4827527..4828987) A 1 NC_031672.1 Transcription factor involved in regulating gluconeogenesis; also involved in the regulation of glyoxylate cycle genes; member of the zinc cluster family of proteins; confers resistance to ketoconazole; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IC] [PMID 17875938]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0000978 - RNA polymerase II core promoter proximal region sequence-specific DNA binding [Evidence IDA] [PMID 17875938]; GO_function: GO:0001077 - RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription [Evidence IMP] [PMID 17875938]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19111667]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19158363]; GO_function: GO:0000981 - sequence-specific DNA binding RNA polymerase II transcription factor activity [Evidence IEA]; GO_function: GO:0004871 - signal transducer activity [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0071466 - cellular response to xenobiotic stimulus [Evidence IMP] [PMID 11943786]; GO_process: GO:0061415 - negative regulation of transcription from RNA polymerase II promoter by a nonfermentable carbon source [Evidence IMP] [PMID 17875938]; GO_process: GO:0035948 - positive regulation of gluconeogenesis by positive regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 17875938]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 11943786]; GO_process: GO:0061414 - positive regulation of transcription from RNA polymerase II promoter by a nonfermentable carbon source [Evidence IMP] [PMID 17875938]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA,IEA]; GO_process: GO:0007165 - signal transduction [Evidence IEA]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Rds2p 4828987 RDS2 30033369 RDS2 Sugiyamaella lignohabitans Rds2p XP_018735747.1 4827527 R 796027 CDS AWJ20_1555 30033370 4829717..4830490 A 1 NC_031672.1 Protein required for delivery of copper to Cox1p; mitochondrial inner membrane protein; association with mitochondrial ribosomes suggests that copper delivery may occur during translation of Cox1p; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005740 - mitochondrial envelope [Evidence IDA] [PMID 2167832]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IDA] [PMID 10501934]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IDA] [PMID 15776235]; GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IDA] [PMID 22984289]; GO_component: GO:0005761 - mitochondrial ribosome [Evidence IDA] [PMID 15776235]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0005507 - copper ion binding [Evidence IEA]; GO_function: GO:0005507 - copper ion binding [Evidence IDA] [PMID 12063264]; GO_process: GO:0009060 - aerobic respiration [Evidence IMP] [PMID 10617659]; GO_process: GO:0006461 - protein complex assembly [Evidence IMP] [PMID 2167832]; Cox11p 4830490 COX11 30033370 COX11 Sugiyamaella lignohabitans Cox11p XP_018735748.1 4829717 D 796027 CDS AWJ20_1556 30033371 complement(4830726..4831607) A 1 NC_031672.1 uncharacterized protein 4831607 30033371 AWJ20_1556 Sugiyamaella lignohabitans uncharacterized protein XP_018735749.1 4830726 R 796027 CDS AWJ20_1557 30033372 4833978..4835381 A 1 NC_031672.1 uncharacterized protein 4835381 30033372 AWJ20_1557 Sugiyamaella lignohabitans uncharacterized protein XP_018735750.1 4833978 D 796027 CDS AWJ20_1558 30033373 complement(4835459..4836841) A 1 NC_031672.1 Protein involved in 5.8S rRNA processing; Ccr4p-like RNase required for correct 3'-end formation of 5.8S rRNA at site E; similar to Ngl1p; NGL2 has a paralog, NGL3, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005622 - intracellular [Evidence IDA] [PMID 12358428]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0004521 - endoribonuclease activity [Evidence IMP,ISS] [PMID 12358428]; GO_function: GO:0004527 - exonuclease activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0004518 - nuclease activity [Evidence IEA]; GO_process: GO:0090305 - nucleic acid phosphodiester bond hydrolysis [Evidence IEA]; GO_process: GO:0006364 - rRNA processing [Evidence IMP] [PMID 12358428]; Ngl2p 4836841 NGL2 30033373 NGL2 Sugiyamaella lignohabitans Ngl2p XP_018735751.1 4835459 R 796027 CDS AWJ20_1559 30033374 4837471..4839897 A 1 NC_031672.1 uncharacterized protein 4839897 30033374 AWJ20_1559 Sugiyamaella lignohabitans uncharacterized protein XP_018735752.1 4837471 D 796027 CDS AWJ20_1560 30033376 complement(4840059..4843133) A 1 NC_031672.1 Karyopherin, responsible for nuclear import of specific proteins; cargoes include Spt15p, Sua7p, histones H2A and H2B, and Nap1p; amino terminus shows similarity to those of other importins, particularly Cse1p; localization is primarily nuclear; function is regulated by sumoylation; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 10385521]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0005643 - nuclear pore [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 10385521]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_function: GO:0008536 - Ran GTPase binding [Evidence IEA]; GO_function: GO:0008565 - protein transporter activity [Evidence IMP,IPI] [PMID 10385521]; GO_process: GO:0006886 - intracellular protein transport [Evidence IEA]; GO_process: GO:0051028 - mRNA transport [Evidence IEA]; GO_process: GO:0006606 - protein import into nucleus [Evidence IMP] [PMID 10385521]; GO_process: GO:0006606 - protein import into nucleus [Evidence IMP] [PMID 12456659]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0042991 - transcription factor import into nucleus [Evidence IMP,IPI] [PMID 15888545]; GO_process: GO:0006810 - transport [Evidence IEA]; Kap114p 4843133 KAP114 30033376 KAP114 Sugiyamaella lignohabitans Kap114p XP_018735753.1 4840059 R 796027 CDS AWJ20_1561 30033377 4844960..4846576 A 1 NC_031672.1 Putative paralog of ATR1; but not required for boron tolerance; member of the DHA2 family of drug:H+ antiporters; YOR378W is not an essential gene; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Amf1p 4846576 AMF1 30033377 AMF1 Sugiyamaella lignohabitans Amf1p XP_018735754.1 4844960 D 796027 CDS AWJ20_1562 30033378 4847816..4849120 A 1 NC_031672.1 Alpha-1,2-mannosyltransferase; involved in O- and N-linked protein glycosylation; type II membrane protein; member of the KRE2/MNT1 mannosyltransferase family; relocalizes from vacuole to cytoplasm upon DNA replication stress; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0005794 - Golgi apparatus [Evidence IDA] [PMID 8631921]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 22842922]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_function: GO:0000026 - alpha-1,2-mannosyltransferase activity [Evidence IDA] [PMID 9020857]; GO_function: GO:0000026 - alpha-1,2-mannosyltransferase activity [Evidence IMP] [PMID 9182588]; GO_function: GO:0000030 - mannosyltransferase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA]; GO_process: GO:0097502 - mannosylation [Evidence IEA]; GO_process: GO:0006487 - protein N-linked glycosylation [Evidence IGI] [PMID 9182588]; GO_process: GO:0006493 - protein O-linked glycosylation [Evidence IGI] [PMID 9182588]; GO_process: GO:0006486 - protein glycosylation [Evidence IEA,IEA]; alpha-1,2-mannosyltransferase KTR1 4849120 KTR1 30033378 KTR1 Sugiyamaella lignohabitans alpha-1,2-mannosyltransferase KTR1 XP_018735755.1 4847816 D 796027 CDS AWJ20_1563 30033379 4849357..4850094 A 1 NC_031672.1 Component of the ESCRT-II complex; ESCRT-II is involved in ubiquitin-dependent sorting of proteins into the endosome; appears to be functionally related to SNF7; involved in glucose derepression; GO_component: GO:0000814 - ESCRT II complex [Evidence IDA] [PMID 12194858]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005768 - endosome [Evidence IEA]; GO_component: GO:0010008 - endosome membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0000433 - negative regulation of transcription from RNA polymerase II promoter by glucose [Evidence IMP] [PMID 7785322]; GO_process: GO:0006623 - protein targeting to vacuole [Evidence IMP,IPI] [PMID 12194858]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0043162 - ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway [Evidence IC] [PMID 15086794]; ESCRT-II subunit protein SNF8 4850094 SNF8 30033379 SNF8 Sugiyamaella lignohabitans ESCRT-II subunit protein SNF8 XP_018735756.1 4849357 D 796027 CDS AWJ20_1564 30033380 join(4850350..4850455,4850502..4852078) A 1 NC_031672.1 uncharacterized protein 4852078 30033380 AWJ20_1564 Sugiyamaella lignohabitans uncharacterized protein XP_018735757.1 4850350 D 796027 CDS AWJ20_1565 30033381 complement(4852146..4854383) A 1 NC_031672.1 Subunit of the anaphase-promoting complex/cyclosome (APC/C); which is a ubiquitin-protein ligase required for degradation of anaphase inhibitors, including mitotic cyclins, during the metaphase/anaphase transition; required for sporulation; relocalizes to the cytosol in response to hypoxia; GO_component: GO:0005680 - anaphase-promoting complex [Evidence IDA] [PMID 9469814]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 22932476]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22932476]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence IMP] [PMID 16481473]; GO_process: GO:0031145 - anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 16481473]; GO_process: GO:0031145 - anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process [Evidence IDA] [PMID 8895471]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0007067 - mitotic nuclear division [Evidence IEA]; GO_process: GO:0032297 - negative regulation of DNA-dependent DNA replication initiation [Evidence IMP] [PMID 9660930]; GO_process: GO:0016567 - protein ubiquitination [Evidence IEA]; GO_process: GO:0016567 - protein ubiquitination [Evidence IDA,IMP] [PMID 16481473]; anaphase promoting complex subunit CDC16 4854383 CDC16 30033381 CDC16 Sugiyamaella lignohabitans anaphase promoting complex subunit CDC16 XP_018735758.1 4852146 R 796027 CDS AWJ20_1566 30033382 4854908..4856704 A 1 NC_031672.1 3'-5' exoribonuclease; required for maturation of 3' ends of 5S rRNA and tRNA-Arg3 from dicistronic transcripts; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 10359084]; GO_function: GO:0008408 - 3'-5' exonuclease activity [Evidence ISS] [PMID 9396823]; GO_function: GO:0000175 - 3'-5'-exoribonuclease activity [Evidence IMP] [PMID 10716935]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0004527 - exonuclease activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0004518 - nuclease activity [Evidence IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_process: GO:0034476 - U5 snRNA 3'-end processing [Evidence IGI] [PMID 10716935]; GO_process: GO:0000467 - exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IGI] [PMID 10716935]; GO_process: GO:0002107 - generation of mature 3'-end of 5S rRNA generated by RNA polymerase III [Evidence IMP] [PMID 10716935]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; GO_process: GO:0034415 - tRNA 3'-trailer cleavage, exonucleolytic [Evidence IMP] [PMID 10716935]; GO_process: GO:0034415 - tRNA 3'-trailer cleavage, exonucleolytic [Evidence IGI,IMP] [PMID 18456844]; GO_process: GO:0008033 - tRNA processing [Evidence IEA]; Rnh70p 4856704 RNH70 30033382 RNH70 Sugiyamaella lignohabitans Rnh70p XP_018735759.1 4854908 D 796027 CDS AWJ20_1567 30033383 complement(4856981..4858120) A 1 NC_031672.1 uncharacterized protein 4858120 30033383 AWJ20_1567 Sugiyamaella lignohabitans uncharacterized protein XP_018735760.1 4856981 R 796027 CDS AWJ20_1568 30033384 4858634..4859749 A 1 NC_031672.1 Saccharopine dehydrogenase (NAD+, L-lysine-forming); catalyzes the conversion of saccharopine to L-lysine, which is the final step in the lysine biosynthesis pathway; also has mRNA binding activity; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 20844764]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0004754 - saccharopine dehydrogenase (NAD+, L-lysine-forming) activity [Evidence IEA,IEA]; GO_function: GO:0004754 - saccharopine dehydrogenase (NAD+, L-lysine-forming) activity [Evidence IDA] [PMID 17002315]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0009085 - lysine biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0009085 - lysine biosynthetic process [Evidence IMP] [PMID 17247984]; GO_process: GO:0019878 - lysine biosynthetic process via aminoadipic acid [Evidence IEA]; GO_process: GO:0019878 - lysine biosynthetic process via aminoadipic acid [Evidence NAS] [PMID 11752249]; GO_process: GO:0019878 - lysine biosynthetic process via aminoadipic acid [Evidence TAS] [PMID 3928261]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; saccharopine dehydrogenase (NAD+, L-lysine-forming) 4859749 LYS1 30033384 LYS1 Sugiyamaella lignohabitans saccharopine dehydrogenase (NAD+, L-lysine-forming) XP_018735761.1 4858634 D 796027 CDS AWJ20_1569 30033385 4860221..4861024 A 1 NC_031672.1 3-keto sterol reductase; catalyzes the last of three steps required to remove two C-4 methyl groups from an intermediate in ergosterol biosynthesis; mutants are sterol auxotrophs; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 11279045]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IDA] [PMID 12119386]; GO_component: GO:0005811 - lipid particle [Evidence IEA,IEA]; GO_component: GO:0005811 - lipid particle [Evidence IDA] [PMID 24868093]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IDA] [PMID 16407407]; GO_function: GO:0000253 - 3-keto sterol reductase activity [Evidence IEA]; GO_function: GO:0000253 - 3-keto sterol reductase activity [Evidence IMP] [PMID 10535978]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_process: GO:0006696 - ergosterol biosynthetic process [Evidence IMP] [PMID 10535978]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; GO_process: GO:0006694 - steroid biosynthetic process [Evidence IEA]; 3-keto-steroid reductase 4861024 ERG27 30033385 ERG27 Sugiyamaella lignohabitans 3-keto-steroid reductase XP_018735762.1 4860221 D 796027 CDS AWJ20_1570 30033387 complement(4861450..4863261) A 1 NC_031672.1 Integral membrane peptide transporter; mediates transport of di- and tri-peptides; conserved protein that contains 12 transmembrane domains; PTR2 expression is regulated by the N-end rule pathway via repression by Cup9p; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 12469340]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 17507646]; GO_function: GO:0042936 - dipeptide transporter activity [Evidence IDA] [PMID 16096264]; GO_function: GO:0015197 - peptide transporter activity [Evidence IMP] [PMID 8264579]; GO_function: GO:0005215 - transporter activity [Evidence IEA]; GO_function: GO:0042937 - tripeptide transporter activity [Evidence IDA] [PMID 16096264]; GO_process: GO:0042938 - dipeptide transport [Evidence IDA] [PMID 16096264]; GO_process: GO:0006857 - oligopeptide transport [Evidence IEA]; GO_process: GO:0015833 - peptide transport [Evidence IEA]; GO_process: GO:0015833 - peptide transport [Evidence IMP] [PMID 8264579]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; GO_process: GO:0042939 - tripeptide transport [Evidence IDA] [PMID 16096264]; Ptr2p 4863261 PTR2 30033387 PTR2 Sugiyamaella lignohabitans Ptr2p XP_018735763.1 4861450 R 796027 CDS AWJ20_1571 30033388 complement(4866201..4867028) A 1 NC_031672.1 uncharacterized protein 4867028 30033388 AWJ20_1571 Sugiyamaella lignohabitans uncharacterized protein XP_018735764.1 4866201 R 796027 CDS AWJ20_1572 30033389 join(4867822..4867842,4867997..4869895) A 1 NC_031672.1 Fimbrin, actin-bundling protein; cooperates with Scp1p (calponin/transgelin) in the organization and maintenance of the actin cytoskeleton; relocalizes from plasma membrane to cytoplasm upon DNA replication stress; GO_component: GO:0030479 - actin cortical patch [Evidence IDA] [PMID 3060468]; GO_component: GO:0032432 - actin filament bundle [Evidence IDA] [PMID 3060468]; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 22842922]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 19053807]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 22842922]; GO_function: GO:0003779 - actin binding [Evidence IEA,IEA]; GO_function: GO:0051015 - actin filament binding [Evidence IDA] [PMID 2643162]; GO_function: GO:0051015 - actin filament binding [Evidence IDA] [PMID 3060468]; GO_function: GO:0005509 - calcium ion binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0030674 - protein binding, bridging [Evidence IDA] [PMID 12857851]; GO_process: GO:0007015 - actin filament organization [Evidence IMP,IPI] [PMID 8522605]; fimbrin 4869895 SAC6 30033389 SAC6 Sugiyamaella lignohabitans fimbrin XP_018735765.1 4867822 D 796027 CDS AWJ20_1573 30033390 complement(4870051..4872420) A 1 NC_031672.1 Component of the Mcm2-7 hexameric helicase complex; MCM2-7 primes origins of DNA replication in G1 and becomes an active ATP-dependent helicase that promotes DNA melting and elongation in S-phase; forms an Mcm4p-6p-7p subcomplex; GO_component: GO:0031261 - DNA replication preinitiation complex [Evidence IDA] [PMID 9554851]; GO_component: GO:0042555 - MCM complex [Evidence IEA]; GO_component: GO:0042555 - MCM complex [Evidence IDA] [PMID 12480933]; GO_component: GO:0097373 - MCM core complex [Evidence IDA] [PMID 13679365]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 10704410]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 7708676]; GO_component: GO:0005656 - nuclear pre-replicative complex [Evidence IDA] [PMID 16824194]; GO_component: GO:0005656 - nuclear pre-replicative complex [Evidence IDA] [PMID 9335335]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 10704410]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 7708676]; GO_component: GO:0031298 - replication fork protection complex [Evidence IDA] [PMID 16531994]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0005524 - ATP binding [Evidence IDA] [PMID 12480933]; GO_function: GO:0043140 - ATP-dependent 3'-5' DNA helicase activity [Evidence IDA] [PMID 13679365]; GO_function: GO:0004003 - ATP-dependent DNA helicase activity [Evidence IDA] [PMID 15723534]; GO_function: GO:1990163 - ATP-dependent four-way junction helicase activity [Evidence IDA] [PMID 13679365]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0003678 - DNA helicase activity [Evidence IEA]; GO_function: GO:0003678 - DNA helicase activity [Evidence IDA] [PMID 18657510]; GO_function: GO:0003688 - DNA replication origin binding [Evidence IDA] [PMID 11756674]; GO_function: GO:0003688 - DNA replication origin binding [Evidence IDA] [PMID 16824194]; GO_function: GO:0003688 - DNA replication origin binding [Evidence IDA] [PMID 9288745]; GO_function: GO:0003682 - chromatin binding [Evidence IDA] [PMID 9159120]; GO_function: GO:0003682 - chromatin binding [Evidence IDA] [PMID 9288745]; GO_function: GO:0004386 - helicase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_function: GO:0003697 - single-stranded DNA binding [Evidence IMP] [PMID 17895243]; GO_function: GO:0017116 - single-stranded DNA-dependent ATP-dependent DNA helicase activity [Evidence IDA] [PMID 18657510]; GO_function: GO:0043142 - single-stranded DNA-dependent ATPase activity [Evidence IDA] [PMID 15723534]; GO_process: GO:0006260 - DNA replication [Evidence IEA,IEA]; GO_process: GO:0006270 - DNA replication initiation [Evidence IEA]; GO_process: GO:0006270 - DNA replication initiation [Evidence IGI,IMP] [PMID 10783164]; GO_process: GO:0006270 - DNA replication initiation [Evidence IGI,IMP] [PMID 2044962]; GO_process: GO:0006271 - DNA strand elongation involved in DNA replication [Evidence IGI,IMP] [PMID 10783164]; GO_process: GO:0006271 - DNA strand elongation involved in DNA replication [Evidence IMP] [PMID 10834843]; GO_process: GO:0006268 - DNA unwinding involved in DNA replication [Evidence IDA] [PMID 13679365]; GO_process: GO:0006268 - DNA unwinding involved in DNA replication [Evidence IDA] [PMID 15723534]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0030466 - chromatin silencing at silent mating-type cassette [Evidence IMP] [PMID 19064704]; GO_process: GO:0006348 - chromatin silencing at telomere [Evidence IMP] [PMID 19064704]; GO_process: GO:0000727 - double-strand break repair via break-induced replication [Evidence IMP] [PMID 20516198]; GO_process: GO:0033260 - nuclear cell cycle DNA replication [Evidence IMP] [PMID 10834843]; GO_process: GO:0033260 - nuclear cell cycle DNA replication [Evidence IMP] [PMID 2044962]; GO_process: GO:0006267 - pre-replicative complex assembly involved in nuclear cell cycle DNA replication [Evidence IDA] [PMID 16824194]; GO_process: GO:0006267 - pre-replicative complex assembly involved in nuclear cell cycle DNA replication [Evidence IPI] [PMID 9335335]; mini-chromosome maintenance complex protein 7 4872420 MCM7 30033390 MCM7 Sugiyamaella lignohabitans mini-chromosome maintenance complex protein 7 XP_018735766.1 4870051 R 796027 CDS AWJ20_1574 30033391 complement(4875643..4876572) A 1 NC_031672.1 Glycerol dehydrogenase; involved in an alternative pathway for glycerol catabolism used under microaerobic conditions; also has mRNA binding activity; member of the aldo-keto reductase (AKR) family; protein abundance increases in response to DNA replication stress; GCY1 has a paralog, YPR1, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0004032 - alditol:NADP+ 1-oxidoreductase activity [Evidence IDA,ISS] [PMID 11306085]; GO_function: GO:0004033 - aldo-keto reductase (NADP) activity [Evidence IDA] [PMID 10818358]; GO_function: GO:0004033 - aldo-keto reductase (NADP) activity [Evidence IDA] [PMID 17140678]; GO_function: GO:0047953 - glycerol 2-dehydrogenase (NADP+) activity [Evidence IEA]; GO_function: GO:1990042 - glycerol dehydrogenase [NAD(P)+] activity [Evidence IMP] [PMID 22979944]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 20844764]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IDA] [PMID 17962934]; GO_process: GO:0042843 - D-xylose catabolic process [Evidence IDA] [PMID 12271459]; GO_process: GO:0019568 - arabinose catabolic process [Evidence IDA] [PMID 12271459]; GO_process: GO:0034599 - cellular response to oxidative stress [Evidence IGI] [PMID 17919749]; GO_process: GO:0006071 - glycerol metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; glycerol 2-dehydrogenase (NADP(+)) GCY1 4876572 GCY1 30033391 GCY1 Sugiyamaella lignohabitans glycerol 2-dehydrogenase (NADP(+)) GCY1 XP_018735767.1 4875643 R 796027 CDS AWJ20_1575 30033392 complement(4876950..4878815) A 1 NC_031672.1 uncharacterized protein 4878815 30033392 AWJ20_1575 Sugiyamaella lignohabitans uncharacterized protein XP_018735768.1 4876950 R 796027 CDS AWJ20_1576 30033393 4879881..4880921 A 1 NC_031672.1 NAD(+)-dependent formate dehydrogenase; may protect cells from exogenous formate; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 11921099]; GO_function: GO:0051287 - NAD binding [Evidence IEA]; GO_function: GO:0048037 - cofactor binding [Evidence IEA]; GO_function: GO:0008863 - formate dehydrogenase (NAD+) activity [Evidence IEA]; GO_function: GO:0008863 - formate dehydrogenase (NAD+) activity [Evidence IGI,ISS] [PMID 11921099]; GO_function: GO:0008863 - formate dehydrogenase (NAD+) activity [Evidence IDA] [PMID 21246355]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor [Evidence IEA]; GO_process: GO:0042183 - formate catabolic process [Evidence IGI] [PMID 11921099]; GO_process: GO:0042183 - formate catabolic process [Evidence IGI] [PMID 19564482]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; formate dehydrogenase (NAD+) 4880921 FDH1 30033393 FDH1 Sugiyamaella lignohabitans formate dehydrogenase (NAD+) XP_018735769.1 4879881 D 796027 CDS AWJ20_1577 30033394 complement(4881090..4881947) A 1 NC_031672.1 Nucleolar protein required for maturation of 18S rRNA; member of the eIF4A subfamily of DEAD-box ATP-dependent RNA helicases; GO_component: GO:0097078 - FAl1-SGD1 complex [Evidence IPI] [PMID 21576267]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 9372960]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004004 - ATP-dependent RNA helicase activity [Evidence ISA] [PMID 9372960]; GO_function: GO:0008026 - ATP-dependent helicase activity [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0004386 - helicase activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0000462 - maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 16449634]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; ATP-dependent RNA helicase FAL1 4881947 FAL1 30033394 FAL1 Sugiyamaella lignohabitans ATP-dependent RNA helicase FAL1 XP_018735770.1 4881090 R 796027 CDS AWJ20_1578 30033395 complement(4882012..4882440) A 1 NC_031672.1 Nucleolar protein required for maturation of 18S rRNA; member of the eIF4A subfamily of DEAD-box ATP-dependent RNA helicases; GO_component: GO:0097078 - FAl1-SGD1 complex [Evidence IPI] [PMID 21576267]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 9372960]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004004 - ATP-dependent RNA helicase activity [Evidence ISA] [PMID 9372960]; GO_function: GO:0008026 - ATP-dependent helicase activity [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0004386 - helicase activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0000462 - maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 16449634]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; ATP-dependent RNA helicase FAL1 4882440 FAL1 30033395 FAL1 Sugiyamaella lignohabitans ATP-dependent RNA helicase FAL1 XP_018735771.1 4882012 R 796027 CDS AWJ20_1579 30033396 4882780..4883637 A 1 NC_031672.1 hypothetical protein; non-essential gene identified in a screen for mutants with increased levels of rDNA transcription; weak similarity with uridine kinases and with phosphoribokinases; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016301 - kinase activity [Evidence IEA,IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0004849 - uridine kinase activity [Evidence IEA]; GO_process: GO:0044211 - CTP salvage [Evidence IEA]; GO_process: GO:0044206 - UMP salvage [Evidence IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; putative uridine kinase DAS2 4883637 DAS2 30033396 DAS2 Sugiyamaella lignohabitans putative uridine kinase DAS2 XP_018735772.1 4882780 D 796027 CDS AWJ20_1580 30033398 4883893..4884732 A 1 NC_031672.1 FRG1 family protein 4884732 30033398 AWJ20_1580 Sugiyamaella lignohabitans FRG1 family protein XP_018735773.1 4883893 D 796027 CDS AWJ20_1581 30033399 complement(4884804..4886132) A 1 NC_031672.1 nitrogen permease regulating protein NPR2 4886132 NPR2 30033399 NPR2 Sugiyamaella lignohabitans nitrogen permease regulating protein NPR2 XP_018735774.1 4884804 R 796027 CDS AWJ20_1582 30033400 4887045..4888766 A 1 NC_031672.1 Tetradecameric mitochondrial chaperonin; required for ATP-dependent folding of precursor polypeptides and complex assembly; prevents aggregation and mediates protein refolding after heat shock; role in mtDNA transmission; phosphorylated; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA]; GO_component: GO:0042645 - mitochondrial nucleoid [Evidence IDA] [PMID 10869431]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 11502169]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 8097278]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016887 - ATPase activity [Evidence IDA] [PMID 7902576]; GO_function: GO:0016887 - ATPase activity [Evidence IDA] [PMID 9256426]; GO_function: GO:0003688 - DNA replication origin binding [Evidence IDA] [PMID 10869431]; GO_function: GO:0051087 - chaperone binding [Evidence IPI] [PMID 9256426]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0003697 - single-stranded DNA binding [Evidence IDA] [PMID 10869431]; GO_function: GO:0051082 - unfolded protein binding [Evidence IMP] [PMID 1359644]; GO_process: GO:0006458 - 'de novo' protein folding [Evidence IMP] [PMID 1978929]; GO_process: GO:0044267 - cellular protein metabolic process [Evidence IEA]; GO_process: GO:0051131 - chaperone-mediated protein complex assembly [Evidence IMP] [PMID 2645524]; GO_process: GO:0006457 - protein folding [Evidence IEA]; GO_process: GO:0045041 - protein import into mitochondrial intermembrane space [Evidence IMP] [PMID 1347713]; GO_process: GO:0051604 - protein maturation [Evidence IMP] [PMID 8097278]; GO_process: GO:0042026 - protein refolding [Evidence IEA]; GO_process: GO:0042026 - protein refolding [Evidence IMP] [PMID 1359644]; GO_process: GO:0042026 - protein refolding [Evidence IDA] [PMID 9256426]; GO_process: GO:0050821 - protein stabilization [Evidence IMP] [PMID 1359644]; GO_process: GO:0006950 - response to stress [Evidence IEA]; chaperone ATPase HSP60 4888766 HSP60 30033400 HSP60 Sugiyamaella lignohabitans chaperone ATPase HSP60 XP_018735775.1 4887045 D 796027 CDS AWJ20_1585 30033403 4890788..4891183 A 1 NC_031672.1 Histone variant H2AZ; exchanged for histone H2A in nucleosomes by the SWR1 complex; involved in transcriptional regulation through prevention of the spread of silent heterochromatin; Htz1p-containing nucleosomes facilitate RNA Pol II passage by affecting correct assembly and modification status of RNA Pol II elongation complexes and by favoring efficient nucleosome remodeling; GO_component: GO:0005694 - chromosome [Evidence IEA,IEA]; GO_component: GO:0000790 - nuclear chromatin [Evidence IDA,IPI] [PMID 11081628]; GO_component: GO:0000790 - nuclear chromatin [Evidence IDA,IPI] [PMID 11090616]; GO_component: GO:0000786 - nucleosome [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 24390141]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0003682 - chromatin binding [Evidence IGI,ISS] [PMID 11000274]; GO_function: GO:0003682 - chromatin binding [Evidence IDA] [PMID 11081628]; GO_function: GO:0046982 - protein heterodimerization activity [Evidence IEA]; GO_process: GO:0016568 - chromatin modification [Evidence IEA]; GO_process: GO:0006338 - chromatin remodeling [Evidence IMP] [PMID 21357739]; GO_process: GO:0030466 - chromatin silencing at silent mating-type cassette [Evidence IGI,IPI] [PMID 11090616]; GO_process: GO:0070481 - nuclear-transcribed mRNA catabolic process, non-stop decay [Evidence IMP] [PMID 17660569]; GO_process: GO:0006334 - nucleosome assembly [Evidence IEA]; GO_process: GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence IGI,IMP] [PMID 11081628]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; histone H2AZ 4891183 HTZ1 30033403 HTZ1 Sugiyamaella lignohabitans histone H2AZ XP_018735776.1 4890788 D 796027 CDS AWJ20_1586 30033404 4891926..4893143 A 1 NC_031672.1 T subunit of the mitochondrial glycine decarboxylase complex; glycine decarboxylase is required for the catabolism of glycine to 5,10-methylene-THF; expression is regulated by levels of levels of 5,10-methylene-THF in the cytoplasm; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005960 - glycine cleavage complex [Evidence ISS] [PMID 9047339]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0004047 - aminomethyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0004375 - glycine dehydrogenase (decarboxylating) activity [Evidence IMP] [PMID 9047339]; GO_function: GO:0008483 - transaminase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006546 - glycine catabolic process [Evidence IEA]; GO_process: GO:0006546 - glycine catabolic process [Evidence IC] [PMID 9047339]; GO_process: GO:0006544 - glycine metabolic process [Evidence IMP] [PMID 9047339]; GO_process: GO:0032259 - methylation [Evidence IEA,IEA]; GO_process: GO:0006730 - one-carbon metabolic process [Evidence IGI,IMP] [PMID 10871621]; glycine decarboxylase subunit T 4893143 GCV1 30033404 GCV1 Sugiyamaella lignohabitans glycine decarboxylase subunit T XP_018735777.1 4891926 D 796027 CDS AWJ20_1587 30033405 complement(4893253..4893681) A 1 NC_031672.1 OPA3-like protein 4893681 30033405 AWJ20_1587 Sugiyamaella lignohabitans OPA3-like protein XP_018735778.1 4893253 R 796027 CDS AWJ20_1588 30033406 4895415..4896152 A 1 NC_031672.1 Gamma subunit of the F1 sector of mitochondrial F1F0 ATP synthase; F1F0 ATP synthase is a large, evolutionarily conserved enzyme complex required for ATP synthesis; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005756 - mitochondrial proton-transporting ATP synthase, central stalk [Evidence IDA] [PMID 17082766]; GO_component: GO:0005756 - mitochondrial proton-transporting ATP synthase, central stalk [Evidence IMP] [PMID 7929329]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0045261 - proton-transporting ATP synthase complex, catalytic core F(1) [Evidence IEA,IEA]; GO_component: GO:0045261 - proton-transporting ATP synthase complex, catalytic core F(1) [Evidence IDA] [PMID 15294286]; GO_function: GO:0016887 - ATPase activity [Evidence IDA] [PMID 15294286]; GO_function: GO:0046933 - proton-transporting ATP synthase activity, rotational mechanism [Evidence IEA]; GO_function: GO:0046933 - proton-transporting ATP synthase activity, rotational mechanism [Evidence IDA] [PMID 20691145]; GO_function: GO:0046961 - proton-transporting ATPase activity, rotational mechanism [Evidence IEA]; GO_function: GO:0046961 - proton-transporting ATPase activity, rotational mechanism [Evidence IMP] [PMID 7929329]; GO_process: GO:0006754 - ATP biosynthetic process [Evidence IEA]; GO_process: GO:0015986 - ATP synthesis coupled proton transport [Evidence IEA]; GO_process: GO:0015986 - ATP synthesis coupled proton transport [Evidence IDA] [PMID 20691145]; GO_process: GO:0015986 - ATP synthesis coupled proton transport [Evidence IMP] [PMID 7929329]; GO_process: GO:0006811 - ion transport [Evidence IEA]; GO_process: GO:0015992 - proton transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; F1F0 ATP synthase subunit gamma 4896152 ATP3 30033406 ATP3 Sugiyamaella lignohabitans F1F0 ATP synthase subunit gamma XP_018735779.1 4895415 D 796027 CDS AWJ20_1589 30033407 4896660..4897931 A 1 NC_031672.1 uncharacterized protein 4897931 30033407 AWJ20_1589 Sugiyamaella lignohabitans uncharacterized protein XP_018735780.1 4896660 D 796027 CDS AWJ20_1590 30033409 complement(4898137..4899372) A 1 NC_031672.1 Putative transferase involved in phospholipid biosynthesis; required for incorporation of stearic acid into phosphatidylinositol; affects chromosome stability when overexpressed; CST26 has a paralog, YDR018C, that arose from the whole genome duplication; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0005811 - lipid particle [Evidence IEA,IEA]; GO_component: GO:0005811 - lipid particle [Evidence IDA] [PMID 14562095]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016746 - transferase activity, transferring acyl groups [Evidence IEA,IEA]; GO_function: GO:0016746 - transferase activity, transferring acyl groups [Evidence ISS] [PMID 9259571]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0008654 - phospholipid biosynthetic process [Evidence IEA]; GO_process: GO:0008654 - phospholipid biosynthetic process [Evidence ISS] [PMID 9259571]; Cst26p 4899372 CST26 30033409 CST26 Sugiyamaella lignohabitans Cst26p XP_018735781.1 4898137 R 796027 CDS AWJ20_1591 30033410 4900317..4902167 A 1 NC_031672.1 Multidrug transporter of the major facilitator superfamily; member of the 12-spanner drug:H(+) antiporter DHA1 family; has a role in polyamine homeostasis; involved in spore wall asembly; sequence similarity to DTR1 and QDR1, and the triple mutant dtr1 qdr1 qdr3 exhibits reduced dityrosine fluorescence relative to the single mutants; expression is upregulated under polyamine stress; required for resistance to quinidine, barban, cisplatin, and bleomycin; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 15649438]; GO_function: GO:0015238 - drug transmembrane transporter activity [Evidence IMP] [PMID 15649438]; GO_function: GO:0015203 - polyamine transmembrane transporter activity [Evidence IMP] [PMID 21148207]; GO_process: GO:0030476 - ascospore wall assembly [Evidence IGI] [PMID 23966878]; GO_process: GO:0006855 - drug transmembrane transport [Evidence IMP] [PMID 15649438]; GO_process: GO:0010509 - polyamine homeostasis [Evidence IMP] [PMID 21148207]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Qdr3p 4902167 QDR3 30033410 QDR3 Sugiyamaella lignohabitans Qdr3p XP_018735782.1 4900317 D 796027 CDS AWJ20_1592 30033411 4903858..4905342 A 1 NC_031672.1 Ubiquitin-protein ligase; functions in ER retention of misfolded proteins; required for ER-associated degradation (ERAD) of misfolded proteins; genetically linked to the unfolded protein response (UPR); regulated through association with Hrd3p; contains an H2 ring finger; likely plays a general role in targeting proteins that persistently associate with and potentially obstruct the ER-localized translocon; GO_component: GO:0000839 - Hrd1p ubiquitin ligase ERAD-L complex [Evidence IDA] [PMID 16873066]; GO_component: GO:0000838 - Hrd1p ubiquitin ligase ERAD-M complex [Evidence IDA] [PMID 16873066]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IDA] [PMID 11139575]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IDA] [PMID 9437001]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence IDA] [PMID 11139575]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence IDA,IGI,IMP] [PMID 11146622]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0030433 - ER-associated ubiquitin-dependent protein catabolic process [Evidence IMP,IPI] [PMID 11146622]; GO_process: GO:0030433 - ER-associated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 22298424]; GO_process: GO:0030968 - endoplasmic reticulum unfolded protein response [Evidence IMP] [PMID 22298424]; GO_process: GO:0031505 - fungal-type cell wall organization [Evidence IGI] [PMID 18971375]; GO_process: GO:0016567 - protein ubiquitination [Evidence IEA]; GO_process: GO:0030970 - retrograde protein transport, ER to cytosol [Evidence IMP] [PMID 24292014]; E3 ubiquitin-protein ligase HRD1 4905342 HRD1 30033411 HRD1 Sugiyamaella lignohabitans E3 ubiquitin-protein ligase HRD1 XP_018735783.1 4903858 D 796027 CDS AWJ20_1593 30033412 complement(4905451..4906689) A 1 NC_031672.1 uncharacterized protein 4906689 30033412 AWJ20_1593 Sugiyamaella lignohabitans uncharacterized protein XP_018735784.1 4905451 R 796027 CDS AWJ20_1594 30033413 complement(4906863..4907630) A 1 NC_031672.1 phosphomethylpyrimidine kinase (predicted) 4907630 30033413 AWJ20_1594 Sugiyamaella lignohabitans phosphomethylpyrimidine kinase (predicted) XP_018735785.1 4906863 R 796027 CDS AWJ20_1595 30033414 complement(4908389..4909999) A 1 NC_031672.1 uncharacterized protein 4909999 30033414 AWJ20_1595 Sugiyamaella lignohabitans uncharacterized protein XP_018735786.1 4908389 R 796027 CDS AWJ20_1596 30033415 4910375..4910731 A 1 NC_031672.1 Cytoplasmic glutaredoxin; thioltransferase, glutathione-dependent disulfide oxidoreductase involved in maintaining redox state of target proteins, also exhibits glutathione peroxidase activity, expression induced in response to stress; GRX2 has two in-frame start codons resulting in a shorter isoform that is retained in the cytosol and a longer form translocated to the mitochondrial matrix; GRX2 has a paralog, GRX1, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 11958675]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 11958675]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0015036 - disulfide oxidoreductase activity [Evidence IMP,ISS] [PMID 9571241]; GO_function: GO:0009055 - electron carrier activity [Evidence IEA]; GO_function: GO:0004602 - glutathione peroxidase activity [Evidence IDA] [PMID 12684511]; GO_function: GO:0004602 - glutathione peroxidase activity [Evidence IDA] [PMID 18992757]; GO_function: GO:0004364 - glutathione transferase activity [Evidence IDA] [PMID 12684511]; GO_function: GO:0015035 - protein disulfide oxidoreductase activity [Evidence IEA]; GO_process: GO:0045454 - cell redox homeostasis [Evidence IEA]; GO_process: GO:0034599 - cellular response to oxidative stress [Evidence IMP] [PMID 9571241]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; dithiol glutaredoxin GRX2 4910731 GRX2 30033415 GRX2 Sugiyamaella lignohabitans dithiol glutaredoxin GRX2 XP_018735787.1 4910375 D 796027 CDS AWJ20_1597 30033416 complement(4910932..4912122) A 1 NC_031672.1 Fungal Genetics Stock Center 12068; Fungal Genetics Stock Center 12069; 4-hydroxyphenylpyruvate dioxygenase 4912122 30033416 AWJ20_1597 Sugiyamaella lignohabitans 4-hydroxyphenylpyruvate dioxygenase XP_018735788.1 4910932 R 796027 CDS AWJ20_1598 30033417 complement(4913172..4913852) A 1 NC_031672.1 uncharacterized protein 4913852 30033417 AWJ20_1598 Sugiyamaella lignohabitans uncharacterized protein XP_018735789.1 4913172 R 796027 CDS AWJ20_1599 30033418 4918136..4919398 A 1 NC_031672.1 uncharacterized protein 4919398 30033418 AWJ20_1599 Sugiyamaella lignohabitans uncharacterized protein XP_018735790.1 4918136 D 796027 CDS AWJ20_1600 30033421 complement(4920653..4921765) A 1 NC_031672.1 hypothetical protein; non-tagged protein is detected in purified mitochondria in high-throughput studies; similar to murine NOR1; null mutant is viable and displays elevated frequency of mitochondrial genome loss; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; Aim25p 4921765 AIM25 30033421 AIM25 Sugiyamaella lignohabitans Aim25p XP_018735791.1 4920653 R 796027 CDS AWJ20_1601 30033422 4922299..4923084 A 1 NC_031672.1 Mitochondrial ribosomal protein of the small subunit; GO_component: GO:0005763 - mitochondrial small ribosomal subunit [Evidence IPI] [PMID 11278769]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IPI] [PMID 11278769]; GO_function: GO:0004784 - superoxide dismutase activity [Evidence IEA]; GO_process: GO:0032543 - mitochondrial translation [Evidence IC] [PMID 11278769]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; GO_process: GO:0006801 - superoxide metabolic process [Evidence IEA]; mitochondrial 37S ribosomal protein RSM26 4923084 RSM26 30033422 RSM26 Sugiyamaella lignohabitans mitochondrial 37S ribosomal protein RSM26 XP_018735792.1 4922299 D 796027 CDS AWJ20_1602 30033423 4924201..4924836 A 1 NC_031672.1 Component of the ESCRT-II complex; ESCRT-II is involved in ubiquitin-dependent sorting of proteins into the endosome; GO_component: GO:0000814 - ESCRT II complex [Evidence IDA] [PMID 12194858]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005768 - endosome [Evidence IEA]; GO_component: GO:0010008 - endosome membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0005198 - structural molecule activity [Evidence IDA,IMP] [PMID 15329733]; GO_function: GO:0005198 - structural molecule activity [Evidence IDA,IMP] [PMID 15469844]; GO_process: GO:0000433 - negative regulation of transcription from RNA polymerase II promoter by glucose [Evidence IMP] [PMID 11278625]; GO_process: GO:0006623 - protein targeting to vacuole [Evidence IMP,IPI] [PMID 12194858]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0043162 - ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway [Evidence IC] [PMID 15086794]; ESCRT-II subunit protein VPS25 4924836 VPS25 30033423 VPS25 Sugiyamaella lignohabitans ESCRT-II subunit protein VPS25 XP_018735793.1 4924201 D 796027 CDS AWJ20_1603 30033424 4927695..4931030 A 1 NC_031672.1 protein phosphatase regulator REG1 4931030 REG1 30033424 REG1 Sugiyamaella lignohabitans protein phosphatase regulator REG1 XP_018735794.1 4927695 D 796027 CDS AWJ20_1604 30033425 4931620..4934535 A 1 NC_031672.1 Component of the GARP (Golgi-associated retrograde protein) complex; GARP is required for the recycling of proteins from endosomes to the late Golgi, and for mitosis after DNA damage induced checkpoint arrest; potentially phosphorylated by Cdc28p; members of the GARP complex are Vps51p-Vps52p-Vps53p-Vps54p; GO_component: GO:0000938 - GARP complex [Evidence IPI] [PMID 10637310]; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA,IEA]; GO_component: GO:0005794 - Golgi apparatus [Evidence IDA] [PMID 10637310]; GO_component: GO:0005768 - endosome [Evidence IEA]; GO_component: GO:0010008 - endosome membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0031966 - mitochondrial membrane [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006896 - Golgi to vacuole transport [Evidence IMP] [PMID 10637310]; GO_process: GO:0030476 - ascospore wall assembly [Evidence IMP] [PMID 17645731]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0042147 - retrograde transport, endosome to Golgi [Evidence IDA] [PMID 12686613]; GO_process: GO:0006810 - transport [Evidence IEA]; Vps54p 4934535 VPS54 30033425 VPS54 Sugiyamaella lignohabitans Vps54p XP_018735795.1 4931620 D 796027 CDS AWJ20_1605 30033426 4934662..4935669 A 1 NC_031672.1 uncharacterized protein 4935669 30033426 AWJ20_1605 Sugiyamaella lignohabitans uncharacterized protein XP_018735796.1 4934662 D 796027 CDS AWJ20_1606 30033427 4937060..4938541 A 1 NC_031672.1 Uncharacterized protein YLL007C 4938541 ELM3 30033427 ELM3 Sugiyamaella lignohabitans Uncharacterized protein YLL007C XP_018735797.1 4937060 D 796027 CDS AWJ20_1607 30033428 complement(4938634..4940931) A 1 NC_031672.1 Nucleolar DEAD-box protein required for ribosome assembly and function; including synthesis of 60S ribosomal subunits; constituent of 66S pre-ribosomal particles; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 11583614]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 23212245]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004004 - ATP-dependent RNA helicase activity [Evidence ISA] [PMID 1454790]; GO_function: GO:0008026 - ATP-dependent helicase activity [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0004386 - helicase activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0006364 - rRNA processing [Evidence IMP] [PMID 1454790]; GO_process: GO:0000027 - ribosomal large subunit assembly [Evidence IMP] [PMID 1454790]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; Drs1p 4940931 DRS1 30033428 DRS1 Sugiyamaella lignohabitans Drs1p XP_018735798.1 4938634 R 796027 CDS AWJ20_1608 30033429 4941177..4943678 A 1 NC_031672.1 Essential conserved small ribosomal subunit (40s) synthesis factor; component of the 90S preribosome; required for production of 18S rRNA and small ribosomal subunit; contains five consensus RNA-binding domains and binds to the pre-rRNA at two sites within the 18S region; GO_component: GO:0030686 - 90S preribosome [Evidence IDA] [PMID 12150911]; GO_component: GO:0030686 - 90S preribosome [Evidence IDA] [PMID 23193268]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 11884397]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0042134 - rRNA primary transcript binding [Evidence IDA] [PMID 23193268]; GO_process: GO:0000480 - endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 11884397]; GO_process: GO:0000447 - endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 11884397]; GO_process: GO:0000472 - endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 11884397]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0034462 - small-subunit processome assembly [Evidence IMP] [PMID 18586827]; Mrd1p 4943678 MRD1 30033429 MRD1 Sugiyamaella lignohabitans Mrd1p XP_018735799.1 4941177 D 796027 CDS AWJ20_1609 30033430 4944086..4945051 A 1 NC_031672.1 Protein proposed to be involved in vacuolar functions; mutant shows defect in CPY processing and defects in vacuolar morphology; has similarity to oxidoreductases, found in lipid particles; required for replication of Brome mosaic virus in S. cerevisiae, a model system for studying replication of positive-strand RNA viruses in their natural hosts; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0005811 - lipid particle [Evidence IEA,IEA]; GO_component: GO:0005811 - lipid particle [Evidence IDA] [PMID 14562095]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence ISS] [PMID 8972580]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; GO_process: GO:0006624 - vacuolar protein processing [Evidence IMP] [PMID 21912603]; GO_process: GO:0007033 - vacuole organization [Evidence IMP] [PMID 21912603]; Env9p 4945051 ENV9 30033430 ENV9 Sugiyamaella lignohabitans Env9p XP_018735800.1 4944086 D 796027 CDS AWJ20_1610 30033432 complement(4945244..4946209) A 1 NC_031672.1 Protein proposed to be involved in vacuolar functions; mutant shows defect in CPY processing and defects in vacuolar morphology; has similarity to oxidoreductases, found in lipid particles; required for replication of Brome mosaic virus in S. cerevisiae, a model system for studying replication of positive-strand RNA viruses in their natural hosts; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0005811 - lipid particle [Evidence IEA,IEA]; GO_component: GO:0005811 - lipid particle [Evidence IDA] [PMID 14562095]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence ISS] [PMID 8972580]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; GO_process: GO:0006624 - vacuolar protein processing [Evidence IMP] [PMID 21912603]; GO_process: GO:0007033 - vacuole organization [Evidence IMP] [PMID 21912603]; Env9p 4946209 ENV9 30033432 ENV9 Sugiyamaella lignohabitans Env9p XP_018735801.1 4945244 R 796027 CDS AWJ20_1611 30033433 4947140..4949533 A 1 NC_031672.1 U3 snoRNP protein; component of the small (ribosomal) subunit (SSU) processosome containing U3 snoRNA; required for the biogenesis of18S rRNA; GO_component: GO:0030686 - 90S preribosome [Evidence IDA] [PMID 12150911]; GO_component: GO:0030869 - RENT complex [Evidence IPI] [PMID 10219244]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 12068309]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0033553 - rDNA heterochromatin [Evidence IDA] [PMID 15489292]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0032040 - small-subunit processome [Evidence IDA] [PMID 12068309]; GO_component: GO:0034455 - t-UTP complex [Evidence IDA] [PMID 17515605]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_function: GO:0030515 - snoRNA binding [Evidence IPI] [PMID 12068309]; GO_process: GO:0000462 - maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 12068309]; GO_process: GO:0045943 - positive regulation of transcription from RNA polymerase I promoter [Evidence IMP] [PMID 15489292]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Nan1p 4949533 NAN1 30033433 NAN1 Sugiyamaella lignohabitans Nan1p XP_018735802.1 4947140 D 796027 CDS AWJ20_1612 30033434 4951369..4954329 A 1 NC_031672.1 Karyopherin responsible for the nuclear import of Rfp1p; Rfp1p is a ribosome maturation factor; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 10684247]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0005643 - nuclear pore [Evidence IDA] [PMID 10684247]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 16581791]; GO_function: GO:0008536 - Ran GTPase binding [Evidence IEA]; GO_function: GO:0008565 - protein transporter activity [Evidence IDA,IMP] [PMID 20219973]; GO_process: GO:0006886 - intracellular protein transport [Evidence IEA]; GO_process: GO:0006606 - protein import into nucleus [Evidence IMP,IPI] [PMID 16581791]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0042991 - transcription factor import into nucleus [Evidence IMP,IPI] [PMID 20219973]; GO_process: GO:0006810 - transport [Evidence IEA]; Kap120p 4954329 KAP120 30033434 KAP120 Sugiyamaella lignohabitans Kap120p XP_018735803.1 4951369 D 796027 CDS AWJ20_1613 30033435 complement(4954398..4957256) A 1 NC_031672.1 tyrosine protein phosphatase PTP2 4957256 PTP2 30033435 PTP2 Sugiyamaella lignohabitans tyrosine protein phosphatase PTP2 XP_018735804.1 4954398 R 796027 CDS AWJ20_1614 30033436 complement(4961462..4962730) A 1 NC_031672.1 Vacuolar RNase of the T(2) family; relocalizes to the cytosol where it cleaves tRNAs upon oxidative or stationary phase stress; promotes apoptosis under stress conditions and this function is independent of its catalytic activity; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 19332891]; GO_component: GO:0005576 - extracellular region [Evidence IDA] [PMID 11158587]; GO_component: GO:0000324 - fungal-type vacuole [Evidence IDA] [PMID 24102742]; GO_component: GO:0005775 - vacuolar lumen [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IDA] [PMID 19332891]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0004519 - endonuclease activity [Evidence IEA]; GO_function: GO:0004521 - endoribonuclease activity [Evidence IDA] [PMID 11158587]; GO_function: GO:0004521 - endoribonuclease activity [Evidence IMP] [PMID 19332891]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0004518 - nuclease activity [Evidence IEA]; GO_function: GO:0033897 - ribonuclease T2 activity [Evidence IEA,IEA]; GO_process: GO:0006401 - RNA catabolic process [Evidence IMP] [PMID 19332891]; GO_process: GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic [Evidence IEA,IEA]; GO_process: GO:0006915 - apoptotic process [Evidence IGI] [PMID 19332891]; GO_process: GO:0000902 - cell morphogenesis [Evidence IMP] [PMID 11158587]; GO_process: GO:0090305 - nucleic acid phosphodiester bond hydrolysis [Evidence IEA]; Rny1p 4962730 RNY1 30033436 RNY1 Sugiyamaella lignohabitans Rny1p XP_018735805.1 4961462 R 796027 CDS AWJ20_1615 30033437 complement(4963082..4965064) A 1 NC_031672.1 uncharacterized protein 4965064 30033437 AWJ20_1615 Sugiyamaella lignohabitans uncharacterized protein XP_018735806.1 4963082 R 796027 CDS AWJ20_1616 30033438 complement(4965400..4967766) A 1 NC_031672.1 Major isoform of large subunit of ribonucleotide-diphosphate reductase; the RNR complex catalyzes rate-limiting step in dNTP synthesis, regulated by DNA replication and DNA damage checkpoint pathways via localization of small subunits; relative distribution to the nucleus increases upon DNA replication stress; RNR1 has a paralog, RNR3, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 12732713]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 9315670]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_component: GO:0005971 - ribonucleoside-diphosphate reductase complex [Evidence IEA]; GO_component: GO:0005971 - ribonucleoside-diphosphate reductase complex [Evidence IDA] [PMID 10716984]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IDA] [PMID 16537479]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0004748 - ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor [Evidence IEA,IEA]; GO_function: GO:0004748 - ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor [Evidence IDA] [PMID 10535923]; GO_function: GO:0004748 - ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor [Evidence IDA] [PMID 10716984]; GO_function: GO:0004748 - ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor [Evidence IDA] [PMID 11893751]; GO_function: GO:0004748 - ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor [Evidence IMP] [PMID 8552025]; GO_process: GO:0006260 - DNA replication [Evidence IEA,IEA,IEA]; GO_process: GO:0009263 - deoxyribonucleotide biosynthetic process [Evidence IDA] [PMID 10535923]; GO_process: GO:0009263 - deoxyribonucleotide biosynthetic process [Evidence IDA] [PMID 5459124]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; ribonucleotide-diphosphate reductase subunit RNR1 4967766 RNR1 30033438 RNR1 Sugiyamaella lignohabitans ribonucleotide-diphosphate reductase subunit RNR1 XP_018735807.1 4965400 R 796027 CDS AWJ20_1617 30033439 complement(4968383..4969825) A 1 NC_031672.1 Subunit of phosphatidylinositol (PtdIns) 3-kinase complexes I and II; Complex I is essential in autophagy and Complex II is required for vacuolar protein sorting; required for overflow degradation of misfolded proteins when ERAD is saturated; C-terminus has a novel globular fold that is essential for autophagy through the targeting of the PI3-kinase complex I to the pre-autophagosomal structure; ortholog of the higher eukaryotic gene Beclin 1; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 9105038]; GO_component: GO:0005768 - endosome [Evidence IEA]; GO_component: GO:0010008 - endosome membrane [Evidence IEA]; GO_component: GO:0019898 - extrinsic component of membrane [Evidence IDA] [PMID 9105038]; GO_component: GO:0019898 - extrinsic component of membrane [Evidence IDA] [PMID 9712845]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 19001347]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0034271 - phosphatidylinositol 3-kinase complex I [Evidence IDA] [PMID 11157979]; GO_component: GO:0034272 - phosphatidylinositol 3-kinase complex II [Evidence IDA] [PMID 11157979]; GO_component: GO:0034045 - pre-autophagosomal structure membrane [Evidence IEA]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0032258 - CVT pathway [Evidence IMP] [PMID 9105038]; GO_process: GO:0032258 - CVT pathway [Evidence IMP] [PMID 9712845]; GO_process: GO:0006914 - autophagy [Evidence IEA,IEA]; GO_process: GO:0006914 - autophagy [Evidence IMP] [PMID 22437838]; GO_process: GO:0045324 - late endosome to vacuole transport [Evidence IMP] [PMID 11157979]; GO_process: GO:0016236 - macroautophagy [Evidence IMP] [PMID 11157979]; GO_process: GO:0030242 - peroxisome degradation [Evidence IMP] [PMID 21121900]; GO_process: GO:0006661 - phosphatidylinositol biosynthetic process [Evidence IMP] [PMID 12244127]; GO_process: GO:0034727 - piecemeal microautophagy of nucleus [Evidence IMP] [PMID 18701704]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0042147 - retrograde transport, endosome to Golgi [Evidence IGI,IMP] [PMID 12244127]; GO_process: GO:0006810 - transport [Evidence IEA]; Vps30p 4969825 VPS30 30033439 VPS30 Sugiyamaella lignohabitans Vps30p XP_018735808.1 4968383 R 796027 CDS AWJ20_1618 30033440 complement(4970275..4971906) A 1 NC_031672.1 Protein required for mitochondrial ribosome small subunit biogenesis; null mutant is defective in respiration and in maturation of 15S rRNA; protein is localized to the mitochondrial inner membrane; null mutant interacts synthetically with prohibitin (Phb1p); GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IDA] [PMID 22621929]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0005525 - GTP binding [Evidence IBA,IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0030490 - maturation of SSU-rRNA [Evidence IMP] [PMID 22621929]; Gep3p 4971906 GEP3 30033440 GEP3 Sugiyamaella lignohabitans Gep3p XP_018735809.1 4970275 R 796027 CDS AWJ20_1619 30033441 complement(4972333..4973940) A 1 NC_031672.1 Ammonium permease of high capacity and low affinity; belongs to a ubiquitous family of cytoplasmic membrane proteins that transport only ammonium (NH4+); expression is under the nitrogen catabolite repression regulation ammonia permease; MEP3 has a paralog, MEP1, that arose from the whole genome duplication; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence TAS] [PMID 11486013]; GO_component: GO:0005886 - plasma membrane [Evidence ISS] [PMID 9234685]; GO_function: GO:0008519 - ammonium transmembrane transporter activity [Evidence IEA]; GO_function: GO:0008519 - ammonium transmembrane transporter activity [Evidence IDA,IMP,ISS] [PMID 9234685]; GO_process: GO:0072488 - ammonium transmembrane transport [Evidence IEA]; GO_process: GO:0015696 - ammonium transport [Evidence IEA,IEA]; GO_process: GO:0015696 - ammonium transport [Evidence IMP,ISS] [PMID 9234685]; GO_process: GO:0019740 - nitrogen utilization [Evidence IMP] [PMID 9234685]; GO_process: GO:0006810 - transport [Evidence IEA]; ammonium permease MEP3 4973940 MEP3 30033441 MEP3 Sugiyamaella lignohabitans ammonium permease MEP3 XP_018735810.1 4972333 R 796027 CDS AWJ20_1620 30033443 complement(4974414..4976042) A 1 NC_031672.1 uncharacterized protein 4976042 30033443 AWJ20_1620 Sugiyamaella lignohabitans uncharacterized protein XP_018735811.1 4974414 R 796027 CDS AWJ20_1621 30033444 complement(4976201..4979170) A 1 NC_031672.1 Key component of the RAM signaling network; required for proper cell morphogenesis and cell separation after mitosis; GO_component: GO:0005933 - cellular bud [Evidence IDA] [PMID 12972564]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0000131 - incipient cellular bud site [Evidence IDA] [PMID 12972564]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 12972564]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0007118 - budding cell apical bud growth [Evidence IMP] [PMID 12972564]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0000920 - cytokinetic cell separation [Evidence IMP] [PMID 12972564]; GO_process: GO:0007165 - signal transduction [Evidence IMP] [PMID 12972564]; Sog2p 4979170 SOG2 30033444 SOG2 Sugiyamaella lignohabitans Sog2p XP_018735812.1 4976201 R 796027 CDS AWJ20_1622 30033445 complement(4979790..4980179) A 1 NC_031672.1 GTP binding protein (mammalian Ranp homolog); involved in the maintenance of nuclear organization, RNA processing and transport; interacts with Kap121p, Kap123p and Pdr6p (karyophilin betas); not required for viability; protein abundance increases in response to DNA replication stress; GSP2 has a paralog, GSP1, that arose from the whole genome duplication; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IGI,ISS] [PMID 8455603]; GO_function: GO:0005525 - GTP binding [Evidence IEA,IEA]; GO_function: GO:0003924 - GTPase activity [Evidence IEA]; GO_function: GO:0003924 - GTPase activity [Evidence IGI,ISS] [PMID 8455603]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006184 - GTP catabolic process [Evidence IEA]; GO_process: GO:0006886 - intracellular protein transport [Evidence IEA]; GO_process: GO:0006913 - nucleocytoplasmic transport [Evidence IEA]; GO_process: GO:0006997 - nucleus organization [Evidence IGI,ISS] [PMID 8455603]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0007165 - signal transduction [Evidence IEA]; GO_process: GO:0007264 - small GTPase mediated signal transduction [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Ran GTPase GSP2 4980179 GSP2 30033445 GSP2 Sugiyamaella lignohabitans Ran GTPase GSP2 XP_018735813.1 4979790 R 796027 CDS AWJ20_1623 30033446 4982728..4983645 A 1 NC_031672.1 uncharacterized protein 4983645 30033446 AWJ20_1623 Sugiyamaella lignohabitans uncharacterized protein XP_018735814.1 4982728 D 796027 CDS AWJ20_1624 30033447 complement(4983685..4984317) A 1 NC_031672.1 uncharacterized protein 4984317 30033447 AWJ20_1624 Sugiyamaella lignohabitans uncharacterized protein XP_018735815.1 4983685 R 796027 CDS AWJ20_1625 30033448 4988536..4989165 A 1 NC_031672.1 Subunit of TFIIH complex; facilities dissociation of the Ssl2p helices from TFIIH; expression levels regulated by Arg5,6p; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm and nucleus; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005675 - holo TFIIH complex [Evidence IDA] [PMID 22411836]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; TFIIH complex subunit TFB6 4989165 TFB6 30033448 TFB6 Sugiyamaella lignohabitans TFIIH complex subunit TFB6 XP_018735816.1 4988536 D 796027 CDS AWJ20_1626 30033449 complement(4989316..4991352) A 1 NC_031672.1 translocase ULS1 4991352 ULS1 30033449 ULS1 Sugiyamaella lignohabitans translocase ULS1 XP_018735817.1 4989316 R 796027 CDS AWJ20_1627 30033450 complement(4991398..4993407) A 1 NC_031672.1 translocase ULS1 4993407 ULS1 30033450 ULS1 Sugiyamaella lignohabitans translocase ULS1 XP_018735818.1 4991398 R 796027 CDS AWJ20_1628 30033451 complement(4993946..4995739) A 1 NC_031672.1 Major of three pyruvate decarboxylase isozymes; key enzyme in alcoholic fermentation; decarboxylates pyruvate to acetaldehyde; involved in amino acid catabolism; subject to glucose-, ethanol-, and autoregulation; activated by phosphorylation in response to glucose levels; N-terminally propionylated in vivo; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 2665820]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 16850348]; GO_function: GO:0047433 - branched-chain-2-oxoacid decarboxylase activity [Evidence IMP] [PMID 9546164]; GO_function: GO:0016831 - carboxy-lyase activity [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA,IEA]; GO_function: GO:0016829 - lyase activity [Evidence IEA]; GO_function: GO:0000287 - magnesium ion binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004737 - pyruvate decarboxylase activity [Evidence IEA]; GO_function: GO:0004737 - pyruvate decarboxylase activity [Evidence IDA] [PMID 23423327]; GO_function: GO:0004737 - pyruvate decarboxylase activity [Evidence IDA] [PMID 2404950]; GO_function: GO:0030976 - thiamine pyrophosphate binding [Evidence IEA]; GO_process: GO:0006559 - L-phenylalanine catabolic process [Evidence IEA]; GO_process: GO:0006559 - L-phenylalanine catabolic process [Evidence IGI] [PMID 12499363]; GO_process: GO:0000955 - amino acid catabolic process via Ehrlich pathway [Evidence IEA]; GO_process: GO:0000949 - aromatic amino acid family catabolic process to alcohol via Ehrlich pathway [Evidence IGI] [PMID 12499363]; GO_process: GO:0009083 - branched-chain amino acid catabolic process [Evidence IEA]; GO_process: GO:0019655 - glucose catabolic process to ethanol [Evidence IDA] [PMID 2404950]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0006090 - pyruvate metabolic process [Evidence IDA] [PMID 2404950]; GO_process: GO:0006569 - tryptophan catabolic process [Evidence IEA]; GO_process: GO:0006569 - tryptophan catabolic process [Evidence IGI] [PMID 12499363]; indolepyruvate decarboxylase 1 4995739 PDC1 30033451 PDC1 Sugiyamaella lignohabitans indolepyruvate decarboxylase 1 XP_018735819.1 4993946 R 796027 CDS AWJ20_1629 30033452 4997146..4998708 A 1 NC_031672.1 Cholinephosphate cytidylyltransferase; a rate-determining enzyme of the CDP-choline pathway for phosphatidylcholine synthesis, inhibited by Sec14p, activated upon lipid-binding; contains an element within the regulatory domain involved in both silencing and activation of enzymatic activity; GO_component: GO:0005794 - Golgi apparatus [Evidence TAS] [PMID 10397762]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005635 - nuclear envelope [Evidence IDA] [PMID 12200438]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 12200438]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0004105 - choline-phosphate cytidylyltransferase activity [Evidence IEA]; GO_function: GO:0004105 - choline-phosphate cytidylyltransferase activity [Evidence IDA] [PMID 2826147]; GO_function: GO:0016779 - nucleotidyltransferase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006657 - CDP-choline pathway [Evidence IDA] [PMID 10397762]; GO_process: GO:0009058 - biosynthetic process [Evidence IEA]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0006656 - phosphatidylcholine biosynthetic process [Evidence IEA]; GO_process: GO:0006656 - phosphatidylcholine biosynthetic process [Evidence IDA] [PMID 10397762]; GO_process: GO:0008654 - phospholipid biosynthetic process [Evidence IEA]; choline-phosphate cytidylyltransferase 4998708 PCT1 30033452 PCT1 Sugiyamaella lignohabitans choline-phosphate cytidylyltransferase XP_018735820.1 4997146 D 796027 CDS AWJ20_1630 30033454 complement(5002073..5005195) A 1 NC_031672.1 ssDNA endodeoxyribonuclease RAD2 5005195 RAD2 30033454 RAD2 Sugiyamaella lignohabitans ssDNA endodeoxyribonuclease RAD2 XP_018735821.1 5002073 R 796027 CDS AWJ20_1631 30033455 5005924..5006391 A 1 NC_031672.1 Subunit of hexameric RecA-like ATPase Elp456 Elongator subcomplex; which is required for modification of wobble nucleosides in tRNA; iki1 mutations confer resistance to the K. lactis toxin zymocin; GO_component: GO:0033588 - Elongator holoenzyme complex [Evidence IDA] [PMID 11689709]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 12139626]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 12139626]; GO_function: GO:0016887 - ATPase activity [Evidence IDA,IMP] [PMID 22343726]; GO_function: GO:0000049 - tRNA binding [Evidence IDA] [PMID 22343726]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA,IEA]; GO_process: GO:0006400 - tRNA modification [Evidence IMP] [PMID 15769872]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Elongator subunit IKI1 5006391 IKI1 30033455 IKI1 Sugiyamaella lignohabitans Elongator subunit IKI1 XP_018735822.1 5005924 D 796027 CDS AWJ20_1632 30033456 5006849..5009104 A 1 NC_031672.1 Beta3-like subunit of the yeast AP-3 complex; functions in transport of alkaline phosphatase to the vacuole via the alternate pathway; exists in both cytosolic and peripherally associated membrane-bound pools; GO_component: GO:0030123 - AP-3 adaptor complex [Evidence IEA]; GO_component: GO:0030123 - AP-3 adaptor complex [Evidence IMP] [PMID 9250663]; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA,IEA]; GO_component: GO:0030665 - clathrin-coated vesicle membrane [Evidence IEA]; GO_component: GO:0031410 - cytoplasmic vesicle [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0030117 - membrane coat [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006896 - Golgi to vacuole transport [Evidence IMP] [PMID 9335339]; GO_process: GO:0006886 - intracellular protein transport [Evidence IEA]; GO_process: GO:0006623 - protein targeting to vacuole [Evidence IMP] [PMID 17895371]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IEA]; Apl6p 5009104 APL6 30033456 APL6 Sugiyamaella lignohabitans Apl6p XP_018735823.1 5006849 D 796027 CDS AWJ20_1633 30033457 complement(5009207..5012638) A 1 NC_031672.1 U2-snRNP associated splicing factor; forms extensive associations with the branch site-3' splice site-3' exon region upon prespliceosome formation; similarity to the mammalian U2 snRNP-associated splicing factor SAP155; GO_component: GO:0005686 - U2 snRNP [Evidence IDA] [PMID 15565172]; GO_component: GO:0005686 - U2 snRNP [Evidence IDA] [PMID 16314500]; GO_component: GO:0071004 - U2-type prespliceosome [Evidence IDA] [PMID 16618970]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005681 - spliceosomal complex [Evidence IEA]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 12773561]; GO_process: GO:0008380 - RNA splicing [Evidence IEA]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0000398 - mRNA splicing, via spliceosome [Evidence IPI] [PMID 16314500]; GO_process: GO:0000245 - spliceosomal complex assembly [Evidence IPI,ISS] [PMID 10688664]; Hsh155p 5012638 HSH155 30033457 HSH155 Sugiyamaella lignohabitans Hsh155p XP_018735824.1 5009207 R 796027 CDS AWJ20_1634 30033458 5012854..5014683 A 1 NC_031672.1 Subunit of the glycosylphosphatidylinositol transamidase complex; transmembrane protein; adds GPIs to newly synthesized proteins; human PIG-Tp homolog; GO_component: GO:0042765 - GPI-anchor transamidase complex [Evidence IEA]; GO_component: GO:0042765 - GPI-anchor transamidase complex [Evidence IDA] [PMID 11598210]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0003923 - GPI-anchor transamidase activity [Evidence IC,IMP] [PMID 11598210]; GO_process: GO:0006506 - GPI anchor biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0016255 - attachment of GPI anchor to protein [Evidence IEA]; GO_process: GO:0016255 - attachment of GPI anchor to protein [Evidence IMP] [PMID 11598210]; Gpi16p 5014683 GPI16 30033458 GPI16 Sugiyamaella lignohabitans Gpi16p XP_018735825.1 5012854 D 796027 CDS AWJ20_1635 30033459 complement(5014770..5016362) A 1 NC_031672.1 protein kinase BUB1 5016362 BUB1 30033459 BUB1 Sugiyamaella lignohabitans protein kinase BUB1 XP_018735826.1 5014770 R 796027 CDS AWJ20_1636 30033460 complement(5016591..5017637) A 1 NC_031672.1 Subunit of spindle-assembly checkpoint complex; involved in delaying anaphase onset in cells with defects in mitotic spindle assembly; pseudosubstrate inhibitor of APC(Cdc20), the anaphase promoting complex involved in securin (Pds1p) turnover; MAD3 has a paralog, BUB1, that arose from the whole genome duplication; GO_component: GO:0033597 - mitotic checkpoint complex [Evidence IMP,IPI] [PMID 10704439]; GO_component: GO:0033597 - mitotic checkpoint complex [Evidence IDA,IPI] [PMID 11726501]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0000075 - cell cycle checkpoint [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0032837 - distributive segregation [Evidence IMP] [PMID 15951820]; GO_process: GO:0044774 - mitotic DNA integrity checkpoint [Evidence IGI] [PMID 16651657]; GO_process: GO:0007067 - mitotic nuclear division [Evidence IEA]; GO_process: GO:0007094 - mitotic spindle assembly checkpoint [Evidence IGI,IMP] [PMID 10704439]; Mad3p 5017637 MAD3 30033460 MAD3 Sugiyamaella lignohabitans Mad3p XP_018735827.1 5016591 R 796027 CDS AWJ20_1637 30033461 5017919..5019619 A 1 NC_031672.1 Phosphoribosylaminoimidazole carboxylase; catalyzes a step in the 'de novo' purine nucleotide biosynthetic pathway; red pigment accumulates in mutant cells deprived of adenine; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016831 - carboxy-lyase activity [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016829 - lyase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0004638 - phosphoribosylaminoimidazole carboxylase activity [Evidence IEA,IEA]; GO_function: GO:0004638 - phosphoribosylaminoimidazole carboxylase activity [Evidence IMP] [PMID 5767024]; GO_process: GO:0006189 - 'de novo' IMP biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0006189 - 'de novo' IMP biosynthetic process [Evidence IC] [PMID 5767024]; GO_process: GO:0006144 - purine nucleobase metabolic process [Evidence IMP] [PMID 8939809]; GO_process: GO:0006164 - purine nucleotide biosynthetic process [Evidence IEA]; GO_process: GO:0006164 - purine nucleotide biosynthetic process [Evidence IC] [PMID 5767024]; phosphoribosylaminoimidazole carboxylase ADE2 5019619 ADE2 30033461 ADE2 Sugiyamaella lignohabitans phosphoribosylaminoimidazole carboxylase ADE2 XP_018735828.1 5017919 D 796027 CDS AWJ20_1638 30033462 complement(5019238..5019510) A 1 NC_031672.1 transcriptional regulator 5019510 30033462 AWJ20_1638 Sugiyamaella lignohabitans transcriptional regulator XP_018735829.1 5019238 R 796027 CDS AWJ20_1639 30033463 complement(5019793..5022000) A 1 NC_031672.1 Vacuolar membrane polyphosphate polymerase; subunit of the vacuolar transporter chaperone (VTC) complex involved in synthesis and transfer of polyP to the vacuole; regulates membrane trafficking; role in non-autophagic vacuolar fusion; protein abundance increases in response to DNA replication stress; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 17079729]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0031310 - intrinsic component of vacuolar membrane [Evidence IDA] [PMID 12584253]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0033254 - vacuolar transporter chaperone complex [Evidence IPI] [PMID 11823419]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0008976 - polyphosphate kinase activity [Evidence IDA] [PMID 19390046]; GO_process: GO:0016237 - microautophagy [Evidence IDA,IMP] [PMID 17079729]; GO_process: GO:0006797 - polyphosphate metabolic process [Evidence IMP] [PMID 11102525]; GO_process: GO:0006797 - polyphosphate metabolic process [Evidence IMP] [PMID 19390046]; GO_process: GO:0007034 - vacuolar transport [Evidence IDA,IMP] [PMID 17079729]; GO_process: GO:0042144 - vacuole fusion, non-autophagic [Evidence IMP] [PMID 11823419]; Vtc4p 5022000 VTC4 30033463 VTC4 Sugiyamaella lignohabitans Vtc4p XP_018735830.1 5019793 R 796027 CDS AWJ20_1640 30033465 5025136..5025561 A 1 NC_031672.1 Alpha 1 subunit of the 20S proteasome; involved in the degradation of ubiquitinated substrates; 20S proteasome is the core complex of the 26S proteasome; essential for growth; detected in the mitochondria; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IC] [PMID 9087403]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0042175 - nuclear outer membrane-endoplasmic reticulum membrane network [Evidence IC] [PMID 9087403]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IC] [PMID 9087403]; GO_component: GO:0000502 - proteasome complex [Evidence IEA]; GO_component: GO:0005839 - proteasome core complex [Evidence IEA]; GO_component: GO:0019773 - proteasome core complex, alpha-subunit complex [Evidence IEA]; GO_component: GO:0019773 - proteasome core complex, alpha-subunit complex [Evidence IDA] [PMID 9087403]; GO_component: GO:0034515 - proteasome storage granule [Evidence IC] [PMID 9087403]; GO_function: GO:0004175 - endopeptidase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_function: GO:0004298 - threonine-type endopeptidase activity [Evidence IEA,IEA]; GO_process: GO:0010499 - proteasomal ubiquitin-independent protein catabolic process [Evidence IDA] [PMID 19162040]; GO_process: GO:0043161 - proteasome-mediated ubiquitin-dependent protein catabolic process [Evidence IDA] [PMID 11545745]; GO_process: GO:0043161 - proteasome-mediated ubiquitin-dependent protein catabolic process [Evidence IDA] [PMID 19029916]; GO_process: GO:0006508 - proteolysis [Evidence IEA]; GO_process: GO:0051603 - proteolysis involved in cellular protein catabolic process [Evidence IEA]; GO_process: GO:0006511 - ubiquitin-dependent protein catabolic process [Evidence IEA]; proteasome core particle subunit alpha 1 5025561 SCL1 30033465 SCL1 Sugiyamaella lignohabitans proteasome core particle subunit alpha 1 XP_018735831.1 5025136 D 796027 CDS AWJ20_1641 30033466 5027240..5028820 A 1 NC_031672.1 ADP-ribosylation factor (ARF) GTPase activating protein (GAP) effector; involved in Trans-Golgi-Network (TGN) transport; contains C2C2H2 cysteine/histidine motif; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA,IEA]; GO_component: GO:0030136 - clathrin-coated vesicle [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_function: GO:0008060 - ARF GTPase activator activity [Evidence IEA]; GO_function: GO:0008060 - ARF GTPase activator activity [Evidence IDA] [PMID 12627398]; GO_function: GO:0008060 - ARF GTPase activator activity [Evidence IGI,ISS] [PMID 9677411]; GO_function: GO:0005096 - GTPase activator activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0006888 - ER to Golgi vesicle-mediated transport [Evidence IGI,ISS] [PMID 9677411]; GO_process: GO:0006891 - intra-Golgi vesicle-mediated transport [Evidence IGI,ISS] [PMID 9677411]; GO_process: GO:0043547 - positive regulation of GTPase activity [Evidence IEA,IEA]; GO_process: GO:0032312 - regulation of ARF GTPase activity [Evidence IEA]; Age2p 5028820 AGE2 30033466 AGE2 Sugiyamaella lignohabitans Age2p XP_018735832.1 5027240 D 796027 CDS AWJ20_1642 30033467 complement(5029048..5029944) A 1 NC_031672.1 Constituent of 66S pre-ribosomal particles; involved in 60S ribosomal subunit biogenesis; localizes to both nucleolus and cytoplasm; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 11583614]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 10953080]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 11583614]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 17443350]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 23212245]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0000915 - actomyosin contractile ring assembly [Evidence IMP] [PMID 14657029]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0042273 - ribosomal large subunit biogenesis [Evidence IMP,IPI] [PMID 11583614]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; Nop15p 5029944 NOP15 30033467 NOP15 Sugiyamaella lignohabitans Nop15p XP_018735833.1 5029048 R 796027 CDS AWJ20_1643 30033468 complement(5032323..5033330) A 1 NC_031672.1 Cholinephosphotransferase; required for phosphatidylcholine biosynthesis and for inositol-dependent regulation of EPT1 transcription; CPT1 has a paralog, EPT1, that arose from the whole genome duplication; GO_component: GO:0005794 - Golgi apparatus [Evidence IDA] [PMID 8543066]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 2153142]; GO_component: GO:0043231 - intracellular membrane-bounded organelle [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IEA,IEA]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IDA] [PMID 3005242]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0031090 - organelle membrane [Evidence IEA]; GO_function: GO:0004142 - diacylglycerol cholinephosphotransferase activity [Evidence IEA]; GO_function: GO:0004142 - diacylglycerol cholinephosphotransferase activity [Evidence IDA,IMP] [PMID 3029130]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016780 - phosphotransferase activity, for other substituted phosphate groups [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006657 - CDP-choline pathway [Evidence IDA,IMP] [PMID 3029130]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0006656 - phosphatidylcholine biosynthetic process [Evidence IEA]; GO_process: GO:0008654 - phospholipid biosynthetic process [Evidence IEA,IEA]; diacylglycerol cholinephosphotransferase 5033330 CPT1 30033468 CPT1 Sugiyamaella lignohabitans diacylglycerol cholinephosphotransferase XP_018735834.1 5032323 R 796027 CDS AWJ20_1645 30033470 5035381..5035764 A 1 NC_031672.1 uncharacterized protein 5035764 30033470 AWJ20_1645 Sugiyamaella lignohabitans uncharacterized protein XP_018735835.1 5035381 D 796027 CDS AWJ20_1646 30033471 join(5036873..5037107,5037667..5038517) A 1 NC_031672.1 Mitochondrial phosphate carrier; imports inorganic phosphate into mitochondria; functionally redundant with Mir1p but less abundant than Mir1p under normal conditions; expression is induced at high temperature; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14756774]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0005315 - inorganic phosphate transmembrane transporter activity [Evidence IDA] [PMID 14756774]; GO_process: GO:0006817 - phosphate ion transport [Evidence IDA] [PMID 14756774]; GO_process: GO:0055085 - transmembrane transport [Evidence IDA] [PMID 14756774]; GO_process: GO:0006810 - transport [Evidence IEA]; Pic2p 5038517 PIC2 30033471 PIC2 Sugiyamaella lignohabitans Pic2p XP_018735836.1 5036873 D 796027 CDS AWJ20_1647 30033472 5038901..5039926 A 1 NC_031672.1 PTEN homolog with no demonstrated inositol lipid phosphatase activity; plays a role in normal sporulation; homolog of human tumor suppressor gene PTEN/MMAC1/TEP1 and fission yeast ptn1; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 15913452]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0016791 - phosphatase activity [Evidence IEA]; GO_function: GO:0016314 - phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase activity [Evidence IEA]; GO_function: GO:0004725 - protein tyrosine phosphatase activity [Evidence IEA]; GO_function: GO:0008138 - protein tyrosine/serine/threonine phosphatase activity [Evidence IEA]; GO_process: GO:0030476 - ascospore wall assembly [Evidence IMP] [PMID 11070083]; GO_process: GO:0016311 - dephosphorylation [Evidence IEA]; GO_process: GO:0035335 - peptidyl-tyrosine dephosphorylation [Evidence IEA]; GO_process: GO:0046856 - phosphatidylinositol dephosphorylation [Evidence NAS] [PMID 11395408]; GO_process: GO:0046856 - phosphatidylinositol dephosphorylation [Evidence IGI] [PMID 15913452]; GO_process: GO:0006470 - protein dephosphorylation [Evidence IEA]; Tep1p 5039926 TEP1 30033472 TEP1 Sugiyamaella lignohabitans Tep1p XP_018735837.1 5038901 D 796027 CDS AWJ20_1648 30033473 complement(5040086..5040706) A 1 NC_031672.1 hypothetical protein that may function in RNA processing; interacts with Pbp1p and Pbp4p and associates with ribosomes; contains an RNA-binding LSM domain and an AD domain; GFP-fusion protein is induced by the DNA-damaging agent MMS; relative distribution to the nucleus increases upon DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0010494 - cytoplasmic stress granule [Evidence IDA] [PMID 20368989]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_component: GO:0005840 - ribosome [Evidence IDA] [PMID 16702403]; GO_function: GO:0003723 - RNA binding [Evidence ISS] [PMID 15225602]; GO_process: GO:0016070 - RNA metabolic process [Evidence ISS] [PMID 15225602]; GO_process: GO:0016070 - RNA metabolic process [Evidence IPI] [PMID 16702403]; Lsm12p 5040706 LSM12 30033473 LSM12 Sugiyamaella lignohabitans Lsm12p XP_018735838.1 5040086 R 796027 CDS AWJ20_1649 30033474 5041730..5043817 A 1 NC_031672.1 Protein involved in recovery from cell cycle arrest; acts in response to pheromone; also involved in regulation of intra-S DNA damage checkpoint and autophagy; is essential for dephosphorylation of Atg13p; interacts with Far3p, Far7p, Far8p, Far9p, Far10p and with the phosphatases Pph21p, Pph22p and Pph3p; has similarity to the N- and C-termini of N. crassa HAM-2; similar to human Fam40A and Fam40B; GO_component: GO:0000138 - Golgi trans cisterna [Evidence IDA] [PMID 22782902]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 23625923]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0031573 - intra-S DNA damage checkpoint [Evidence IMP] [PMID 22782902]; GO_process: GO:0016239 - positive regulation of macroautophagy [Evidence IMP] [PMID 22782902]; GO_process: GO:0000321 - re-entry into mitotic cell cycle after pheromone arrest [Evidence IGI] [PMID 12588993]; Far11p 5043817 FAR11 30033474 FAR11 Sugiyamaella lignohabitans Far11p XP_018735839.1 5041730 D 796027 CDS AWJ20_1650 30033476 complement(5045026..5047401) A 1 NC_031672.1 uncharacterized protein 5047401 30033476 AWJ20_1650 Sugiyamaella lignohabitans uncharacterized protein XP_018735840.1 5045026 R 796027 CDS AWJ20_1651 30033477 complement(5047869..5048501) A 1 NC_031672.1 uncharacterized protein 5048501 30033477 AWJ20_1651 Sugiyamaella lignohabitans uncharacterized protein XP_018735841.1 5047869 R 796027 CDS AWJ20_1652 30033478 complement(5051057..5052247) A 1 NC_031672.1 Histone deacetylase and subunit of Set3 and Rpd3L complexes; required for gene activation via specific deacetylation of lysines in H3 and H4 histone tails; subunit of the Set3 complex, a meiotic-specific repressor of sporulation specific genes that contains deacetylase activity; co-localizes with Cmr1p in nuclear foci in response to DNA damage by MMS; GO_component: GO:0070210 - Rpd3L-Expanded complex [Evidence IDA] [PMID 19040720]; GO_component: GO:0034967 - Set3 complex [Evidence IDA] [PMID 11711434]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_function: GO:0017136 - NAD-dependent histone deacetylase activity [Evidence IDA] [PMID 11711434]; GO_function: GO:0032041 - NAD-dependent histone deacetylase activity (H3-K14 specific) [Evidence IEA]; GO_function: GO:0097372 - NAD-dependent histone deacetylase activity (H3-K18 specific) [Evidence IEA]; GO_function: GO:0046969 - NAD-dependent histone deacetylase activity (H3-K9 specific) [Evidence IEA]; GO_function: GO:0046970 - NAD-dependent histone deacetylase activity (H4-K16 specific) [Evidence IEA]; GO_function: GO:0045129 - NAD-independent histone deacetylase activity [Evidence IDA] [PMID 11711434]; GO_function: GO:0004407 - histone deacetylase activity [Evidence IEA]; GO_function: GO:0031078 - histone deacetylase activity (H3-K14 specific) [Evidence IEA]; GO_function: GO:0032129 - histone deacetylase activity (H3-K9 specific) [Evidence IEA]; GO_function: GO:0034739 - histone deacetylase activity (H4-K16 specific) [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_process: GO:0016568 - chromatin modification [Evidence IEA]; GO_process: GO:0006325 - chromatin organization [Evidence ISS] [PMID 8962081]; GO_process: GO:0070932 - histone H3 deacetylation [Evidence IEA]; GO_process: GO:0070933 - histone H4 deacetylation [Evidence IEA]; GO_process: GO:0016575 - histone deacetylation [Evidence IEA]; GO_process: GO:0016575 - histone deacetylation [Evidence IDA] [PMID 11711434]; GO_process: GO:0045835 - negative regulation of meiosis [Evidence IMP] [PMID 11711434]; GO_process: GO:0032874 - positive regulation of stress-activated MAPK cascade [Evidence IMP] [PMID 18487345]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IMP] [PMID 19379692]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence ISS] [PMID 8962081]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; histone deacetylase HOS2 5052247 HOS2 30033478 HOS2 Sugiyamaella lignohabitans histone deacetylase HOS2 XP_018735842.1 5051057 R 796027 CDS AWJ20_1653 30033479 5053503..5056841 A 1 NC_031672.1 Subunit of the multiprotein cohesin complex; required for sister chromatid cohesion in mitotic cells; also required, with Rec8p, for cohesion and recombination during meiosis; phylogenetically conserved SMC chromosomal ATPase family member; GO_component: GO:0005694 - chromosome [Evidence IEA,IEA,IEA]; GO_component: GO:0034990 - nuclear mitotic cohesin complex [Evidence IDA] [PMID 9990856]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 15282802]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016887 - ATPase activity [Evidence TAS] [PMID 9887095]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0030437 - ascospore formation [Evidence IMP] [PMID 10412984]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0051276 - chromosome organization [Evidence IEA]; GO_process: GO:0051177 - meiotic sister chromatid cohesion [Evidence IMP] [PMID 10412984]; GO_process: GO:0007067 - mitotic nuclear division [Evidence IEA]; GO_process: GO:0007064 - mitotic sister chromatid cohesion [Evidence IGI] [PMID 9335333]; GO_process: GO:0007131 - reciprocal meiotic recombination [Evidence IMP] [PMID 10412984]; GO_process: GO:0007130 - synaptonemal complex assembly [Evidence IMP] [PMID 10412984]; cohesin subunit SMC3 5056841 SMC3 30033479 SMC3 Sugiyamaella lignohabitans cohesin subunit SMC3 XP_018735843.1 5053503 D 796027 CDS AWJ20_1654 30033480 complement(5057098..5058801) A 1 NC_031672.1 Polyamine oxidase; converts spermine to spermidine, which is required for the essential hypusination modification of translation factor eIF-5A; also involved in pantothenic acid biosynthesis; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_function: GO:0052904 - N1-acetylspermidine:oxygen oxidoreductase (3-acetamidopropanal-forming) activity [Evidence IEA]; GO_function: GO:0052903 - N1-acetylspermine:oxygen oxidoreductase (3-acetamidopropanal-forming) activity [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0046592 - polyamine oxidase activity [Evidence IMP] [PMID 11154694]; GO_function: GO:0046592 - polyamine oxidase activity [Evidence IDA] [PMID 21067138]; GO_function: GO:0052902 - spermidine:oxygen oxidoreductase (3-aminopropanal-forming) activity [Evidence IEA]; GO_function: GO:0052901 - spermine:oxygen oxidoreductase (spermidine-forming) activity [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0015940 - pantothenate biosynthetic process [Evidence IMP] [PMID 11154694]; GO_process: GO:0006598 - polyamine catabolic process [Evidence IGI,IMP] [PMID 12586697]; polyamine oxidase 5058801 FMS1 30033480 FMS1 Sugiyamaella lignohabitans polyamine oxidase XP_018735844.1 5057098 R 796027 CDS AWJ20_1655 30033481 5062045..5063772 A 1 NC_031672.1 Putative transporter in the major facilitator superfamily; member of the 12-spanner drug:H(+) antiporter DHA1 family; mutations in membrane-spanning domains permit cation and histidinol uptake; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005886 - plasma membrane [Evidence ISS] [PMID 8955402]; GO_function: GO:0015665 - alcohol transmembrane transporter activity [Evidence IMP] [PMID 2405251]; GO_function: GO:0022890 - inorganic cation transmembrane transporter activity [Evidence IMP] [PMID 8955402]; GO_process: GO:0006812 - cation transport [Evidence IMP] [PMID 8955402]; GO_process: GO:0015850 - organic hydroxy compound transport [Evidence IMP] [PMID 2405251]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Hol1p 5063772 HOL1 30033481 HOL1 Sugiyamaella lignohabitans Hol1p XP_018735845.1 5062045 D 796027 CDS AWJ20_1657 30033483 5066091..5068121 A 1 NC_031672.1 Mitochondrial amino acid transporter; acts both as a glutamate uniporter and as an aspartate-glutamate exchanger; involved in nitrogen metabolism and nitrogen compound biosynthesis; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence ISS] [PMID 10930523]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0015183 - L-aspartate transmembrane transporter activity [Evidence IDA] [PMID 14622413]; GO_function: GO:0005313 - L-glutamate transmembrane transporter activity [Evidence IDA] [PMID 14622413]; GO_function: GO:0015297 - antiporter activity [Evidence IDA] [PMID 14622413]; GO_function: GO:0015292 - uniporter activity [Evidence IDA] [PMID 14622413]; GO_process: GO:0015813 - L-glutamate transport [Evidence IDA] [PMID 14622413]; GO_process: GO:0006865 - amino acid transport [Evidence IEA]; GO_process: GO:0015810 - aspartate transport [Evidence IDA] [PMID 14622413]; GO_process: GO:0044271 - cellular nitrogen compound biosynthetic process [Evidence IMP] [PMID 14622413]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Agc1p 5068121 AGC1 30033483 AGC1 Sugiyamaella lignohabitans Agc1p XP_018735846.1 5066091 D 796027 CDS AWJ20_1658 30033484 5069882..5073496 A 1 NC_031672.1 Ubiquitin-specific protease involved in protein deubiquitination; catalytic activity regulated by an N-terminal TRAF-like domain and and C-terminal sequences; physically interacts with anaphase-promoting complex/cyclosome (APC/C) activator, Cdh1p; forms a complex with AAA peroxins Pex1p and Pex6p; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005777 - peroxisome [Evidence IDA] [PMID 21665945]; GO_function: GO:0008234 - cysteine-type peptidase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_function: GO:0004843 - ubiquitin-specific protease activity [Evidence IDA] [PMID 10527495]; GO_function: GO:0004843 - ubiquitin-specific protease activity [Evidence IDA,IMP] [PMID 21665945]; GO_function: GO:0004843 - ubiquitin-specific protease activity [Evidence IDA] [PMID 21710968]; GO_process: GO:0016579 - protein deubiquitination [Evidence ISA] [PMID 19734957]; GO_process: GO:0016579 - protein deubiquitination [Evidence IDA,IMP] [PMID 21665945]; GO_process: GO:0006508 - proteolysis [Evidence IEA]; GO_process: GO:0006511 - ubiquitin-dependent protein catabolic process [Evidence IEA]; Ubp15p 5073496 UBP15 30033484 UBP15 Sugiyamaella lignohabitans Ubp15p XP_018735847.1 5069882 D 796027 CDS AWJ20_1659 30033485 5074088..5075872 A 1 NC_031672.1 Non-essential hypothetical protein; promoter contains a consensus binding sequence for factor Abf1p; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0007165 - signal transduction [Evidence IEA]; Ecm25p 5075872 ECM25 30033485 ECM25 Sugiyamaella lignohabitans Ecm25p XP_018735848.1 5074088 D 796027 CDS AWJ20_1660 30033487 5077127..5079430 A 1 NC_031672.1 5-methyltetrahydropteroyltriglutamate- homocysteine S-methyltransferase 5079430 MET6 30033487 MET6 Sugiyamaella lignohabitans 5-methyltetrahydropteroyltriglutamate- homocysteine S-methyltransferase XP_018735849.1 5077127 D 796027 CDS AWJ20_1661 30033488 complement(5079894..5080736) A 1 NC_031672.1 Subunit of the RNA polymerase II mediator complex; associates with core polymerase subunits to form the RNA polymerase II holoenzyme; essential for transcriptional regulation; protein abundance increases in response to DNA replication stress; GO_component: GO:0070847 - core mediator complex [Evidence IDA] [PMID 9891034]; GO_component: GO:0016592 - mediator complex [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0001128 - RNA polymerase II transcription coactivator activity involved in preinitiation complex assembly [Evidence IDA] [PMID 9234719]; GO_function: GO:0001104 - RNA polymerase II transcription cofactor activity [Evidence IEA]; GO_process: GO:0051123 - RNA polymerase II transcriptional preinitiation complex assembly [Evidence IDA] [PMID 9234719]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IDA,IMP] [PMID 9234719]; GO_process: GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence IEA]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Med6p 5080736 MED6 30033488 MED6 Sugiyamaella lignohabitans Med6p XP_018735850.1 5079894 R 796027 CDS AWJ20_1662 30033489 5080923..5084066 A 1 NC_031672.1 uncharacterized protein 5084066 30033489 AWJ20_1662 Sugiyamaella lignohabitans uncharacterized protein XP_018735851.1 5080923 D 796027 CDS AWJ20_1663 30033490 5086228..5086689 A 1 NC_031672.1 hypothetical protein; required for survival upon exposure to K1 killer toxin; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 17054397]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; Fyv4p 5086689 FYV4 30033490 FYV4 Sugiyamaella lignohabitans Fyv4p XP_018735852.1 5086228 D 796027 CDS AWJ20_1664 30033491 complement(5086940..5087470) A 1 NC_031672.1 Dinucleoside triphosphate hydrolase; has similarity to the tumor suppressor FHIT and belongs to the histidine triad (HIT) superfamily of nucleotide-binding proteins; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0047710 - bis(5'-adenosyl)-triphosphatase activity [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IDA] [PMID 12028594]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IDA] [PMID 1653209]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0009164 - nucleoside catabolic process [Evidence IMP] [PMID 9573184]; Hnt2p 5087470 HNT2 30033491 HNT2 Sugiyamaella lignohabitans Hnt2p XP_018735853.1 5086940 R 796027 CDS AWJ20_1665 30033492 5088185..5088586 A 1 NC_031672.1 Expansin-A1 .2 5088586 DAG7 30033492 DAG7 Sugiyamaella lignohabitans Expansin-A1 .2 XP_018735854.1 5088185 D 796027 CDS AWJ20_1666 30033493 5091479..5092849 A 1 NC_031672.1 calmodulin-dependent protein kinase CMK1 5092849 CMK1 30033493 CMK1 Sugiyamaella lignohabitans calmodulin-dependent protein kinase CMK1 XP_018735855.1 5091479 D 796027 CDS AWJ20_1667 30033494 5096469..5098694 A 1 NC_031672.1 transcription factor Grt1 (predicted) 5098694 grt1 30033494 grt1 Sugiyamaella lignohabitans transcription factor Grt1 (predicted) XP_018735856.1 5096469 D 796027 CDS AWJ20_1668 30033495 complement(5098970..5100112) A 1 NC_031672.1 uncharacterized protein 5100112 30033495 AWJ20_1668 Sugiyamaella lignohabitans uncharacterized protein XP_018735857.1 5098970 R 796027 CDS AWJ20_1671 30033499 5102654..5103166 A 1 NC_031672.1 Squalene epoxidase; catalyzes the epoxidation of squalene to 2,3-oxidosqualene; plays an essential role in the ergosterol-biosynthesis pathway and is the specific target of the antifungal drug terbinafine; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 9450962]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0043231 - intracellular membrane-bounded organelle [Evidence IEA]; GO_component: GO:0005811 - lipid particle [Evidence IDA] [PMID 24868093]; GO_component: GO:0005811 - lipid particle [Evidence IDA] [PMID 9450962]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0031090 - organelle membrane [Evidence IEA]; GO_function: GO:0008144 - drug binding [Evidence IMP] [PMID 14638499]; GO_function: GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0004506 - squalene monooxygenase activity [Evidence IEA,IEA]; GO_function: GO:0004506 - squalene monooxygenase activity [Evidence IMP] [PMID 200835]; GO_function: GO:0004506 - squalene monooxygenase activity [Evidence IDA] [PMID 9450962]; GO_process: GO:0006696 - ergosterol biosynthetic process [Evidence IMP] [PMID 200835]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; squalene monooxygenase 5103166 ERG1 30033499 ERG1 Sugiyamaella lignohabitans squalene monooxygenase XP_018735858.1 5102654 D 796027 CDS AWJ20_1672 30033500 5103538..5104200 A 1 NC_031672.1 Squalene epoxidase; catalyzes the epoxidation of squalene to 2,3-oxidosqualene; plays an essential role in the ergosterol-biosynthesis pathway and is the specific target of the antifungal drug terbinafine; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 9450962]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0043231 - intracellular membrane-bounded organelle [Evidence IEA]; GO_component: GO:0005811 - lipid particle [Evidence IDA] [PMID 24868093]; GO_component: GO:0005811 - lipid particle [Evidence IDA] [PMID 9450962]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0031090 - organelle membrane [Evidence IEA]; GO_function: GO:0008144 - drug binding [Evidence IMP] [PMID 14638499]; GO_function: GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0004506 - squalene monooxygenase activity [Evidence IEA,IEA]; GO_function: GO:0004506 - squalene monooxygenase activity [Evidence IMP] [PMID 200835]; GO_function: GO:0004506 - squalene monooxygenase activity [Evidence IDA] [PMID 9450962]; GO_process: GO:0006696 - ergosterol biosynthetic process [Evidence IMP] [PMID 200835]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; squalene monooxygenase 5104200 ERG1 30033500 ERG1 Sugiyamaella lignohabitans squalene monooxygenase XP_018735859.1 5103538 D 796027 CDS AWJ20_1673 30033501 complement(5105520..5107163) A 1 NC_031672.1 Malate synthase; can accept butyryl-CoA as acyl-CoA donor in addition to traditional substrate acetyl-CoA; recycles glyoxylate generated during allantoin degradation; expression sensitive to nitrogen catabolite repression and induced by allophanate, an intermediate in allantoin degradation; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_component: GO:0009514 - glyoxysome [Evidence IEA,IEA]; GO_component: GO:0005777 - peroxisome [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0004474 - malate synthase activity [Evidence IEA,IEA]; GO_function: GO:0004474 - malate synthase activity [Evidence IMP] [PMID 23642236]; GO_function: GO:0004474 - malate synthase activity [Evidence IDA] [PMID 8462696]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0000256 - allantoin catabolic process [Evidence IDA] [PMID 8462696]; GO_process: GO:0006097 - glyoxylate cycle [Evidence IEA,IEA,IEA]; GO_process: GO:0006144 - purine nucleobase metabolic process [Evidence IEA]; GO_process: GO:0006099 - tricarboxylic acid cycle [Evidence IEA]; malate synthase DAL7 5107163 DAL7 30033501 DAL7 Sugiyamaella lignohabitans malate synthase DAL7 XP_018735860.1 5105520 R 796027 CDS AWJ20_1674 30033502 5109002..5109394 A 1 NC_031672.1 Small subunit of the clathrin-associated adaptor complex AP-3; involved in vacuolar protein sorting; related to the sigma subunit of the mammalian clathrin AP-3 complex; suppressor of loss of casein kinase 1 function; protein abundance increases in response to DNA replication stress; GO_component: GO:0030123 - AP-3 adaptor complex [Evidence IEA]; GO_component: GO:0030123 - AP-3 adaptor complex [Evidence IMP] [PMID 9250663]; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA,IEA]; GO_component: GO:0031410 - cytoplasmic vesicle [Evidence IEA]; GO_component: GO:0030659 - cytoplasmic vesicle membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0030117 - membrane coat [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0008565 - protein transporter activity [Evidence IEA]; GO_process: GO:0006896 - Golgi to vacuole transport [Evidence IMP] [PMID 9335339]; GO_process: GO:0006886 - intracellular protein transport [Evidence IEA]; GO_process: GO:0006623 - protein targeting to vacuole [Evidence IMP] [PMID 17895371]; GO_process: GO:0015031 - protein transport [Evidence IEA,IEA]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IEA]; Aps3p 5109394 APS3 30033502 APS3 Sugiyamaella lignohabitans Aps3p XP_018735861.1 5109002 D 796027 CDS AWJ20_1675 30033503 5110420..5112237 A 1 NC_031672.1 uncharacterized protein 5112237 30033503 AWJ20_1675 Sugiyamaella lignohabitans uncharacterized protein XP_018735862.1 5110420 D 796027 CDS AWJ20_1676 30033504 5115390..5115965 A 1 NC_031672.1 Small rho-like GTPase; essential for establishment and maintenance of cell polarity; plays a role late in cell fusion via activation of key cell fusion regulator Fus2p; mutants have defects in the organization of actin and septins; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 12455994]; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 12455994]; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 8167411]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 12455994]; GO_component: GO:0000131 - incipient cellular bud site [Evidence IDA] [PMID 12455994]; GO_component: GO:0000131 - incipient cellular bud site [Evidence IDA] [PMID 8167411]; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 8167411]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0031965 - nuclear membrane [Evidence IDA] [PMID 12455994]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 12455994]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 8167411]; GO_component: GO:0005940 - septin ring [Evidence IDA] [PMID 23906065]; GO_function: GO:0005525 - GTP binding [Evidence IEA,IEA]; GO_function: GO:0003924 - GTPase activity [Evidence IDA] [PMID 11591390]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0007118 - budding cell apical bud growth [Evidence IMP] [PMID 10066831]; GO_process: GO:0007119 - budding cell isotropic bud growth [Evidence IMP] [PMID 10066831]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0000747 - conjugation with cellular fusion [Evidence IMP] [PMID 22323294]; GO_process: GO:0030010 - establishment of cell polarity [Evidence IMP] [PMID 23468594]; GO_process: GO:0001403 - invasive growth in response to glucose limitation [Evidence IMP] [PMID 10066831]; GO_process: GO:0000750 - pheromone-dependent signal transduction involved in conjugation with cellular fusion [Evidence IGI,IMP] [PMID 11003652]; GO_process: GO:0045921 - positive regulation of exocytosis [Evidence IMP] [PMID 11595741]; GO_process: GO:0045921 - positive regulation of exocytosis [Evidence IGI,IPI] [PMID 19955214]; GO_process: GO:0007124 - pseudohyphal growth [Evidence IMP] [PMID 10066831]; GO_process: GO:0007096 - regulation of exit from mitosis [Evidence IMP] [PMID 12234925]; GO_process: GO:0060178 - regulation of exocyst localization [Evidence IMP] [PMID 11595741]; GO_process: GO:0031384 - regulation of initiation of mating projection growth [Evidence IMP] [PMID 14734532]; GO_process: GO:0032889 - regulation of vacuole fusion, non-autophagic [Evidence IMP] [PMID 11598008]; GO_process: GO:0019236 - response to pheromone [Evidence IEA]; GO_process: GO:0031106 - septin ring organization [Evidence IMP] [PMID 14517318]; GO_process: GO:0007264 - small GTPase mediated signal transduction [Evidence IEA]; Rho family GTPase CDC42 5115965 CDC42 30033504 CDC42 Sugiyamaella lignohabitans Rho family GTPase CDC42 XP_018735863.1 5115390 D 796027 CDS AWJ20_1677 30033505 5117289..5118809 A 1 NC_031672.1 Alpha subunit of chaperonin-containing T-complex; complex mediates protein folding in the cytosol; involved in actin cytoskeleton maintenance; overexpression in neurons suppresses formation of pathogenic conformations of huntingtin protein; GO_component: GO:0005832 - chaperonin-containing T-complex [Evidence IPI] [PMID 15704212]; GO_component: GO:0005832 - chaperonin-containing T-complex [Evidence IDA] [PMID 16762366]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 16622836]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0051082 - unfolded protein binding [Evidence IEA]; GO_function: GO:0051082 - unfolded protein binding [Evidence IDA] [PMID 16762366]; GO_process: GO:0044267 - cellular protein metabolic process [Evidence IEA]; GO_process: GO:0006457 - protein folding [Evidence IEA]; GO_process: GO:0006457 - protein folding [Evidence IDA] [PMID 16762366]; chaperonin-containing T-complex alpha subunit TCP1 5118809 TCP1 30033505 TCP1 Sugiyamaella lignohabitans chaperonin-containing T-complex alpha subunit TCP1 XP_018735864.1 5117289 D 796027 CDS AWJ20_1678 30033506 5119592..5121778 A 1 NC_031672.1 Sterol regulatory element binding protein; induces transcription of sterol biosynthetic genes and of DAN/TIR gene products; relocates from intracellular membranes to perinuclear foci on sterol depletion; UPC2 has a paralog, ECM22, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0016020 - membrane [Evidence IDA] [PMID 18675371]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IC] [PMID 11533229]; GO_component: GO:0048471 - perinuclear region of cytoplasm [Evidence IDA] [PMID 18675371]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0000978 - RNA polymerase II core promoter proximal region sequence-specific DNA binding [Evidence IDA] [PMID 11533229]; GO_function: GO:0001077 - RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription [Evidence IDA] [PMID 11533229]; GO_function: GO:0001077 - RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription [Evidence IMP] [PMID 16055745]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0000981 - sequence-specific DNA binding RNA polymerase II transcription factor activity [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0071456 - cellular response to hypoxia [Evidence IMP] [PMID 19807692]; GO_process: GO:0035961 - positive regulation of ergosterol biosynthetic process by positive regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 11533229]; GO_process: GO:0035961 - positive regulation of ergosterol biosynthetic process by positive regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 16055745]; GO_process: GO:0035969 - positive regulation of sterol import by positive regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 12077145]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 11238402]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA,IEA]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Upc2p 5121778 UPC2 30033506 UPC2 Sugiyamaella lignohabitans Upc2p XP_018735865.1 5119592 D 796027 CDS AWJ20_1679 30033507 complement(5122084..5122545) A 1 NC_031672.1 Transcriptional coactivator; bridges the DNA-binding region of Gcn4p and TATA-binding protein Spt15p; suppressor of frameshift mutations; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IC] [PMID 9710580]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO_function: GO:0003713 - transcription coactivator activity [Evidence IDA] [PMID 9710580]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IDA] [PMID 9710580]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Mbf1p 5122545 MBF1 30033507 MBF1 Sugiyamaella lignohabitans Mbf1p XP_018735866.1 5122084 R 796027 CDS AWJ20_1680 30033509 5123001..5125082 A 1 NC_031672.1 Uncharacterized protein C14F5.02 5125082 30033509 AWJ20_1680 Sugiyamaella lignohabitans Uncharacterized protein C14F5.02 XP_018735867.1 5123001 D 796027 CDS AWJ20_1681 30033510 complement(5127839..5129446) A 1 NC_031672.1 glucose-inactivated glycerol proton symporter STL1 5129446 STL1 30033510 STL1 Sugiyamaella lignohabitans glucose-inactivated glycerol proton symporter STL1 XP_018735868.1 5127839 R 796027 CDS AWJ20_1682 30033511 complement(5131245..5132420) A 1 NC_031672.1 Cis-golgi GTPase-activating protein (GAP) for yeast Rabs; the Rab family members are Ypt1p (in vivo) and for Ypt1p, Sec4p, Ypt7p, and Ypt51p (in vitro); involved in vesicle docking and fusion; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0005794 - Golgi apparatus [Evidence IDA] [PMID 11359917]; GO_component: GO:0005795 - Golgi stack [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0005096 - GTPase activator activity [Evidence IEA]; GO_function: GO:0005097 - Rab GTPase activator activity [Evidence IEA]; GO_function: GO:0005097 - Rab GTPase activator activity [Evidence IDA,IMP,IPI,ISS] [PMID 10508155]; GO_process: GO:0043547 - positive regulation of GTPase activity [Evidence IEA]; GO_process: GO:0032851 - positive regulation of Rab GTPase activity [Evidence IEA]; GO_process: GO:0032313 - regulation of Rab GTPase activity [Evidence IEA]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IDA] [PMID 11118206]; Gyp1p 5132420 GYP1 30033511 GYP1 Sugiyamaella lignohabitans Gyp1p XP_018735869.1 5131245 R 796027 CDS AWJ20_1683 30033512 5134267..5135208 A 1 NC_031672.1 NAD-dependent 5,10-methylenetetrahydrafolate dehydrogenase; plays a catalytic role in oxidation of cytoplasmic one-carbon units; expression is regulated by Bas1p and Bas2p, repressed by adenine, and may be induced by inositol and choline; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 8608153]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0004487 - methylenetetrahydrofolate dehydrogenase (NAD+) activity [Evidence IEA]; GO_function: GO:0004487 - methylenetetrahydrofolate dehydrogenase (NAD+) activity [Evidence IMP,ISS] [PMID 8416923]; GO_function: GO:0004488 - methylenetetrahydrofolate dehydrogenase (NADP+) activity [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_process: GO:0009396 - folic acid-containing compound biosynthetic process [Evidence IEA]; GO_process: GO:0009396 - folic acid-containing compound biosynthetic process [Evidence IMP] [PMID 8608153]; GO_process: GO:0006730 - one-carbon metabolic process [Evidence IEA]; GO_process: GO:0006730 - one-carbon metabolic process [Evidence IDA,IMP] [PMID 8608153]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0009113 - purine nucleobase biosynthetic process [Evidence IDA,IMP] [PMID 8608153]; GO_process: GO:0006164 - purine nucleotide biosynthetic process [Evidence IEA]; methylenetetrahydrofolate dehydrogenase (NAD(+)) 5135208 MTD1 30033512 MTD1 Sugiyamaella lignohabitans methylenetetrahydrofolate dehydrogenase (NAD(+)) XP_018735870.1 5134267 D 796027 CDS AWJ20_1684 30033513 complement(5135422..5136273) A 1 NC_031672.1 Essential protein involved in rRNA maturation and ribosomal assembly; involved in the processing of pre-rRNA and the assembly of the 60S ribosomal subunit; interacts with ribosomal protein L11; localizes predominantly to the nucleolus; constituent of 66S pre-ribosomal particles; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 11864606]; GO_component: GO:0005730 - nucleolus [Evidence IPI] [PMID 11864607]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 17443350]; GO_function: GO:0008097 - 5S rRNA binding [Evidence IPI] [PMID 11864606]; GO_function: GO:0008312 - 7S RNA binding [Evidence IPI] [PMID 11864606]; GO_function: GO:0019843 - rRNA binding [Evidence IPI] [PMID 11864606]; GO_process: GO:1902626 - assembly of large subunit precursor of preribosome [Evidence IMP] [PMID 22735702]; GO_process: GO:0000466 - maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 11864606]; GO_process: GO:0000463 - maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 11864606]; GO_process: GO:0000027 - ribosomal large subunit assembly [Evidence IMP] [PMID 11864606]; GO_process: GO:0000027 - ribosomal large subunit assembly [Evidence IPI] [PMID 11864607]; Rpf2p 5136273 RPF2 30033513 RPF2 Sugiyamaella lignohabitans Rpf2p XP_018735871.1 5135422 R 796027 CDS AWJ20_1685 30033514 5136917..5139202 A 1 NC_031672.1 Subunit of Nup84p subcomplex of nuclear pore complex (NPC); contributes to nucleocytoplasmic transport, NPC biogenesis; is involved in establishment of a normal nucleocytoplasmic concentration gradient of GTPase Gsp1p; also plays roles in several processes that may require localization of genes or chromosomes at nuclear periphery, including double-strand break repair, transcription and chromatin silencing; relocalizes to cytosol in response to hypoxia; homolog of human NUP133; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 22932476]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0031965 - nuclear membrane [Evidence IEA]; GO_component: GO:0005643 - nuclear pore [Evidence IEA,IEA]; GO_component: GO:0005643 - nuclear pore [Evidence IDA] [PMID 10684247]; GO_component: GO:0031080 - nuclear pore outer ring [Evidence IDA] [PMID 11823431]; GO_component: GO:0031080 - nuclear pore outer ring [Evidence IDA] [PMID 18046406]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22932476]; GO_function: GO:0017056 - structural constituent of nuclear pore [Evidence IMP] [PMID 22331846]; GO_process: GO:0030466 - chromatin silencing at silent mating-type cassette [Evidence IDA] [PMID 21818277]; GO_process: GO:0006302 - double-strand break repair [Evidence IGI] [PMID 15725626]; GO_process: GO:0006302 - double-strand break repair [Evidence IMP] [PMID 16418532]; GO_process: GO:0006302 - double-strand break repair [Evidence IMP] [PMID 17538013]; GO_process: GO:0031990 - mRNA export from nucleus in response to heat stress [Evidence IMP] [PMID 18258809]; GO_process: GO:0051028 - mRNA transport [Evidence IEA]; GO_process: GO:0035392 - maintenance of chromatin silencing at telomere [Evidence IMP] [PMID 16418532]; GO_process: GO:0000122 - negative regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 22110603]; GO_process: GO:0031081 - nuclear pore distribution [Evidence IMP] [PMID 22331846]; GO_process: GO:0031081 - nuclear pore distribution [Evidence IMP] [PMID 7813444]; GO_process: GO:0031081 - nuclear pore distribution [Evidence IMP] [PMID 7862658]; GO_process: GO:0031081 - nuclear pore distribution [Evidence IMP] [PMID 9725905]; GO_process: GO:0016973 - poly(A)+ mRNA export from nucleus [Evidence IMP] [PMID 21036941]; GO_process: GO:0016973 - poly(A)+ mRNA export from nucleus [Evidence IMP] [PMID 7813444]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 22110603]; GO_process: GO:0045893 - positive regulation of transcription, DNA-templated [Evidence IDA,IGI] [PMID 15817685]; GO_process: GO:0000973 - posttranscriptional tethering of RNA polymerase II gene DNA at nuclear periphery [Evidence IMP] [PMID 20932479]; GO_process: GO:0006606 - protein import into nucleus [Evidence IMP] [PMID 12730220]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006409 - tRNA export from nucleus [Evidence IMP] [PMID 8524308]; GO_process: GO:0034398 - telomere tethering at nuclear periphery [Evidence IMP] [PMID 16418532]; GO_process: GO:0006810 - transport [Evidence IEA]; Nup133p 5139202 NUP133 30033514 NUP133 Sugiyamaella lignohabitans Nup133p XP_018735872.1 5136917 D 796027 CDS AWJ20_1686 30033515 5139874..5140953 A 1 NC_031672.1 Subunit of Nup84p subcomplex of nuclear pore complex (NPC); contributes to nucleocytoplasmic transport, NPC biogenesis; is involved in establishment of a normal nucleocytoplasmic concentration gradient of GTPase Gsp1p; also plays roles in several processes that may require localization of genes or chromosomes at nuclear periphery, including double-strand break repair, transcription and chromatin silencing; relocalizes to cytosol in response to hypoxia; homolog of human NUP133; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 22932476]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0031965 - nuclear membrane [Evidence IEA]; GO_component: GO:0005643 - nuclear pore [Evidence IEA,IEA]; GO_component: GO:0005643 - nuclear pore [Evidence IDA] [PMID 10684247]; GO_component: GO:0031080 - nuclear pore outer ring [Evidence IDA] [PMID 11823431]; GO_component: GO:0031080 - nuclear pore outer ring [Evidence IDA] [PMID 18046406]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22932476]; GO_function: GO:0017056 - structural constituent of nuclear pore [Evidence IMP] [PMID 22331846]; GO_process: GO:0030466 - chromatin silencing at silent mating-type cassette [Evidence IDA] [PMID 21818277]; GO_process: GO:0006302 - double-strand break repair [Evidence IGI] [PMID 15725626]; GO_process: GO:0006302 - double-strand break repair [Evidence IMP] [PMID 16418532]; GO_process: GO:0006302 - double-strand break repair [Evidence IMP] [PMID 17538013]; GO_process: GO:0031990 - mRNA export from nucleus in response to heat stress [Evidence IMP] [PMID 18258809]; GO_process: GO:0051028 - mRNA transport [Evidence IEA]; GO_process: GO:0035392 - maintenance of chromatin silencing at telomere [Evidence IMP] [PMID 16418532]; GO_process: GO:0000122 - negative regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 22110603]; GO_process: GO:0031081 - nuclear pore distribution [Evidence IMP] [PMID 22331846]; GO_process: GO:0031081 - nuclear pore distribution [Evidence IMP] [PMID 7813444]; GO_process: GO:0031081 - nuclear pore distribution [Evidence IMP] [PMID 7862658]; GO_process: GO:0031081 - nuclear pore distribution [Evidence IMP] [PMID 9725905]; GO_process: GO:0016973 - poly(A)+ mRNA export from nucleus [Evidence IMP] [PMID 21036941]; GO_process: GO:0016973 - poly(A)+ mRNA export from nucleus [Evidence IMP] [PMID 7813444]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 22110603]; GO_process: GO:0045893 - positive regulation of transcription, DNA-templated [Evidence IDA,IGI] [PMID 15817685]; GO_process: GO:0000973 - posttranscriptional tethering of RNA polymerase II gene DNA at nuclear periphery [Evidence IMP] [PMID 20932479]; GO_process: GO:0006606 - protein import into nucleus [Evidence IMP] [PMID 12730220]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006409 - tRNA export from nucleus [Evidence IMP] [PMID 8524308]; GO_process: GO:0034398 - telomere tethering at nuclear periphery [Evidence IMP] [PMID 16418532]; GO_process: GO:0006810 - transport [Evidence IEA]; Nup133p 5140953 NUP133 30033515 NUP133 Sugiyamaella lignohabitans Nup133p XP_018735873.1 5139874 D 796027 CDS AWJ20_1687 30033516 complement(5141094..5141393) A 1 NC_031672.1 Essential subunit of the Dam1 complex (aka DASH complex); complex couples kinetochores to the force produced by MT depolymerization thereby aiding in chromosome segregation; is transferred to the kinetochore prior to mitosis; GO_component: GO:0042729 - DASH complex [Evidence IEA]; GO_component: GO:0042729 - DASH complex [Evidence IDA] [PMID 15640796]; GO_component: GO:0042729 - DASH complex [Evidence IDA] [PMID 15664196]; GO_component: GO:0005694 - chromosome [Evidence IEA]; GO_component: GO:0000775 - chromosome, centromeric region [Evidence IEA]; GO_component: GO:0000777 - condensed chromosome kinetochore [Evidence IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA]; GO_component: GO:0000776 - kinetochore [Evidence IEA]; GO_component: GO:0005874 - microtubule [Evidence IEA]; GO_component: GO:0072686 - mitotic spindle [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005819 - spindle [Evidence IEA]; GO_function: GO:0008017 - microtubule binding [Evidence IDA] [PMID 15664196]; GO_function: GO:0008017 - microtubule binding [Evidence IDA] [PMID 16777964]; GO_function: GO:0051010 - microtubule plus-end binding [Evidence IDA] [PMID 17620411]; GO_function: GO:0051010 - microtubule plus-end binding [Evidence IDA] [PMID 20479465]; GO_process: GO:0008608 - attachment of spindle microtubules to kinetochore [Evidence IDA] [PMID 17620411]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0007059 - chromosome segregation [Evidence IEA]; GO_process: GO:0007067 - mitotic nuclear division [Evidence IEA,IEA]; GO_process: GO:0051987 - positive regulation of attachment of spindle microtubules to kinetochore [Evidence IDA] [PMID 20479465]; GO_process: GO:0051987 - positive regulation of attachment of spindle microtubules to kinetochore [Evidence IDA] [PMID 20479468]; GO_process: GO:0031116 - positive regulation of microtubule polymerization [Evidence IDA] [PMID 15664196]; Dad2p 5141393 DAD2 30033516 DAD2 Sugiyamaella lignohabitans Dad2p XP_018735874.1 5141094 R 796027 CDS AWJ20_1688 30033517 complement(5143166..5145433) A 1 NC_031672.1 Essential 88kDa subunit of the exocyst complex; the exocyst mediates polarized targeting and tethering of post-Golgi secretory vesicles to active sites of exocytosis at the plasma membrane prior to SNARE-mediated fusion; anchors the assembled complex to sites of secretion; interacts with SM-like protein and SNARE regulator Sec1p and may recruit it to sites of secretion; interacts with Sec9p and inhibits formation of the t-SNARE complex between Sec9p and Sso1p; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 19073882]; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 19073882]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0000145 - exocyst [Evidence IEA]; GO_component: GO:0000145 - exocyst [Evidence IDA] [PMID 7615633]; GO_component: GO:0000145 - exocyst [Evidence IDA] [PMID 8978675]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 19053807]; GO_component: GO:0005628 - prospore membrane [Evidence IDA] [PMID 24390141]; GO_function: GO:0000149 - SNARE binding [Evidence IDA,IPI] [PMID 15835919]; GO_function: GO:0000149 - SNARE binding [Evidence IDA,IPI] [PMID 22114349]; GO_function: GO:0042803 - protein homodimerization activity [Evidence IDA] [PMID 15835919]; GO_process: GO:0006893 - Golgi to plasma membrane transport [Evidence IGI,IMP] [PMID 7026045]; GO_process: GO:0051601 - exocyst localization [Evidence IMP] [PMID 19073882]; GO_process: GO:0006887 - exocytosis [Evidence IEA,IEA]; GO_process: GO:0006887 - exocytosis [Evidence IMP] [PMID 6996832]; GO_process: GO:0035544 - negative regulation of SNARE complex assembly [Evidence IDA,IPI] [PMID 15835919]; GO_process: GO:0035544 - negative regulation of SNARE complex assembly [Evidence IDA,IGI,IPI] [PMID 22114349]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0090522 - vesicle tethering involved in exocytosis [Evidence IC] [PMID 8978675]; Sec6p 5145433 SEC6 30033517 SEC6 Sugiyamaella lignohabitans Sec6p XP_018735875.1 5143166 R 796027 CDS AWJ20_1689 30033518 complement(5145926..5146735) A 1 NC_031672.1 EEH16864|polysaccharide deacetylase family protein [Paracoccidioides brasiliensis Pb03]; polysaccharide deacetylase family protein 5146735 30033518 AWJ20_1689 Sugiyamaella lignohabitans polysaccharide deacetylase family protein XP_018735876.1 5145926 R 796027 CDS AWJ20_1690 30033520 complement(5147190..5148353) A 1 NC_031672.1 cyclin-dependent serine/threonine protein kinase CTK1 5148353 CTK1 30033520 CTK1 Sugiyamaella lignohabitans cyclin-dependent serine/threonine protein kinase CTK1 XP_018735877.1 5147190 R 796027 CDS AWJ20_1691 30033521 5148992..5150488 A 1 NC_031672.1 Mitochondrial inner membrane Mg(2+) channel; required for maintenance of intramitochondrial Mg(2+) concentrations at the correct level to support splicing of group II introns; similar to bacterial CorA; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IDA] [PMID 10400670]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0015095 - magnesium ion transmembrane transporter activity [Evidence IEA]; GO_function: GO:0015095 - magnesium ion transmembrane transporter activity [Evidence IGI,IMP,ISS] [PMID 10400670]; GO_function: GO:0015095 - magnesium ion transmembrane transporter activity [Evidence IDA] [PMID 12628916]; GO_process: GO:0006811 - ion transport [Evidence IEA]; GO_process: GO:0015693 - magnesium ion transport [Evidence IEA]; GO_process: GO:0045016 - mitochondrial magnesium ion transport [Evidence IGI,IMP,ISS] [PMID 10400670]; GO_process: GO:0045016 - mitochondrial magnesium ion transport [Evidence IDA] [PMID 12628916]; GO_process: GO:0006810 - transport [Evidence IEA]; Mrs2p 5150488 MRS2 30033521 MRS2 Sugiyamaella lignohabitans Mrs2p XP_018735878.1 5148992 D 796027 CDS AWJ20_1692 30033522 complement(5150824..5152638) A 1 NC_031672.1 cyclin-dependent serine/threonine protein kinase SGV1 5152638 SGV1 30033522 SGV1 Sugiyamaella lignohabitans cyclin-dependent serine/threonine protein kinase SGV1 XP_018735879.1 5150824 R 796027 CDS AWJ20_1693 30033523 5153164..5154318 A 1 NC_031672.1 2-enoyl thioester reductase; member of the medium chain dehydrogenase/reductase family; localized to in mitochondria, where it has a probable role in fatty acid synthesis; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 11509667]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0004319 - enoyl-[acyl-carrier-protein] reductase (NADPH, B-specific) activity [Evidence IEA]; GO_function: GO:0016631 - enoyl-[acyl-carrier-protein] reductase activity [Evidence IDA] [PMID 11509667]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0019166 - trans-2-enoyl-CoA reductase (NADPH) activity [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0009060 - aerobic respiration [Evidence IMP] [PMID 11509667]; GO_process: GO:0006633 - fatty acid biosynthetic process [Evidence IEA]; GO_process: GO:0006633 - fatty acid biosynthetic process [Evidence IMP] [PMID 11509667]; GO_process: GO:0006631 - fatty acid metabolic process [Evidence IEA]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; Etr1p 5154318 ETR1 30033523 ETR1 Sugiyamaella lignohabitans Etr1p XP_018735880.1 5153164 D 796027 CDS AWJ20_1694 30033524 5165829..5168105 A 1 NC_031672.1 Protein containing GATA family zinc finger motifs; similar to Gln3p and Dal80p; expression repressed by leucine; GO_component: GO:0005634 - nucleus [Evidence ISA] [PMID 10392447]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO_function: GO:0000981 - sequence-specific DNA binding RNA polymerase II transcription factor activity [Evidence ISA] [PMID 10392447]; GO_function: GO:0003700 - sequence-specific DNA binding transcription factor activity [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence ISA] [PMID 10392447]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; Gat2p 5168105 GAT2 30033524 GAT2 Sugiyamaella lignohabitans Gat2p XP_018735881.1 5165829 D 796027 CDS AWJ20_1695 30033525 5172875..5173285 A 1 NC_031672.1 Ubiquitin-conjugating enzyme; most similar in sequence to Xenopus ubiquitin-conjugating enzyme E2-C, but not a true functional homolog of this E2; unlike E2-C, not required for the degradation of mitotic cyclin Clb2; GO_component: GO:0005737 - cytoplasm [Evidence IC] [PMID 8982460]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0016881 - acid-amino acid ligase activity [Evidence IEA]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence IEA]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence ISS] [PMID 9675819]; GO_process: GO:0006513 - protein monoubiquitination [Evidence TAS] [PMID 8982460]; GO_process: GO:0000209 - protein polyubiquitination [Evidence TAS] [PMID 8982460]; GO_process: GO:0016567 - protein ubiquitination [Evidence IEA]; putative E2 ubiquitin-protein ligase UBC11 5173285 UBC11 30033525 UBC11 Sugiyamaella lignohabitans putative E2 ubiquitin-protein ligase UBC11 XP_018735882.1 5172875 D 796027 CDS AWJ20_1696 30033526 complement(5173722..5174495) A 1 NC_031672.1 uncharacterized protein 5174495 30033526 AWJ20_1696 Sugiyamaella lignohabitans uncharacterized protein XP_018735883.1 5173722 R 796027 CDS AWJ20_1697 30033527 complement(5175197..5176432) A 1 NC_031672.1 uncharacterized protein 5176432 30033527 AWJ20_1697 Sugiyamaella lignohabitans uncharacterized protein XP_018735884.1 5175197 R 796027 CDS AWJ20_1698 30033528 complement(join(5180023..5180732,5180834..5181035)) A 1 NC_031672.1 Translational activator for mRNAs with internal ribosome entry sites; associates with polysomes and binds to a specific subset of mRNAs; localizes to RNA processing bodies (P bodies) and to stress granules; may have a role in translation regulation under stress conditions; ortholog of human ZNF9/CNBP, a gene involved in myotonic dystrophy type 2; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0000932 - cytoplasmic mRNA processing body [Evidence IDA] [PMID 23222640]; GO_component: GO:0000932 - cytoplasmic mRNA processing body [Evidence IDA] [PMID 23285195]; GO_component: GO:0010494 - cytoplasmic stress granule [Evidence IDA] [PMID 23285195]; GO_component: GO:0042788 - polysomal ribosome [Evidence IPI] [PMID 21277287]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 20844764]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 21232131]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0003697 - single-stranded DNA binding [Evidence IDA] [PMID 21232131]; GO_function: GO:0045182 - translation regulator activity [Evidence IDA] [PMID 21277287]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0045727 - positive regulation of translation [Evidence IDA] [PMID 21277287]; Gis2p 5181035 GIS2 30033528 GIS2 Sugiyamaella lignohabitans Gis2p XP_018735885.1 5180023 R 796027 CDS AWJ20_1700 30033532 5187358..5190330 A 1 NC_031672.1 uncharacterized protein 5190330 30033532 AWJ20_1700 Sugiyamaella lignohabitans uncharacterized protein XP_018735886.1 5187358 D 796027 CDS AWJ20_1701 30033533 complement(5190965..5191336) A 1 NC_031672.1 uncharacterized protein 5191336 30033533 AWJ20_1701 Sugiyamaella lignohabitans uncharacterized protein XP_018735887.1 5190965 R 796027 CDS AWJ20_1702 30033534 5192353..5194398 A 1 NC_031672.1 Catalytic epsilon subunit of the translation initiation factor eIF2B; eIF2B is the guanine-nucleotide exchange factor for eIF2; activity subsequently regulated by phosphorylated eIF2; first identified as a negative regulator of GCN4 expression; forms cytoplasmic foci upon DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005851 - eukaryotic translation initiation factor 2B complex [Evidence IDA,IGI,IPI] [PMID 8336705]; GO_component: GO:0005851 - eukaryotic translation initiation factor 2B complex [Evidence IMP] [PMID 8441423]; GO_component: GO:0005851 - eukaryotic translation initiation factor 2B complex [Evidence IDA,IPI] [PMID 8506384]; GO_component: GO:0032045 - guanyl-nucleotide exchange factor complex [Evidence IPI] [PMID 8336705]; GO_component: GO:0032045 - guanyl-nucleotide exchange factor complex [Evidence IDA] [PMID 8506384]; GO_component: GO:0032045 - guanyl-nucleotide exchange factor complex [Evidence IDA,IPI] [PMID 9472020]; GO_function: GO:0005085 - guanyl-nucleotide exchange factor activity [Evidence IMP] [PMID 10805739]; GO_function: GO:0005085 - guanyl-nucleotide exchange factor activity [Evidence IMP] [PMID 12356745]; GO_function: GO:0005085 - guanyl-nucleotide exchange factor activity [Evidence IDA] [PMID 9472020]; GO_function: GO:0016779 - nucleotidyltransferase activity [Evidence IEA]; GO_function: GO:0003743 - translation initiation factor activity [Evidence IEA]; GO_function: GO:0003743 - translation initiation factor activity [Evidence IGI,IPI] [PMID 8336705]; GO_process: GO:0009058 - biosynthetic process [Evidence IEA]; GO_process: GO:0006417 - regulation of translation [Evidence IEA]; GO_process: GO:0006446 - regulation of translational initiation [Evidence IGI,IPI] [PMID 8336705]; GO_process: GO:0006446 - regulation of translational initiation [Evidence IDA] [PMID 8506384]; GO_process: GO:0006412 - translation [Evidence IEA]; GO_process: GO:0006413 - translational initiation [Evidence IEA]; Gcd6p 5194398 GCD6 30033534 GCD6 Sugiyamaella lignohabitans Gcd6p XP_018735888.1 5192353 D 796027 CDS AWJ20_1703 30033535 5195286..5199734 A 1 NC_031672.1 uncharacterized protein 5199734 30033535 AWJ20_1703 Sugiyamaella lignohabitans uncharacterized protein XP_018735889.1 5195286 D 796027 CDS AWJ20_1704 30033536 5200108..5203182 A 1 NC_031672.1 Histidine kinase osmosensor that regulates a MAP kinase cascade; transmembrane protein with an intracellular kinase domain that signals to Ypd1p and Ssk1p, thereby forming a phosphorelay system similar to bacterial two-component regulators; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0005887 - integral component of plasma membrane [Evidence IDA] [PMID 10198019]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 14665464]; GO_component: GO:0005886 - plasma membrane [Evidence ISS] [PMID 8808622]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0009927 - histidine phosphotransfer kinase activity [Evidence IDA,IMP] [PMID 12455952]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0005034 - osmosensor activity [Evidence IDA] [PMID 12821642]; GO_function: GO:0000156 - phosphorelay response regulator activity [Evidence IEA]; GO_function: GO:0000155 - phosphorelay sensor kinase activity [Evidence IEA]; GO_function: GO:0004673 - protein histidine kinase activity [Evidence IEA]; GO_function: GO:0004673 - protein histidine kinase activity [Evidence IDA] [PMID 8808622]; GO_function: GO:0004871 - signal transducer activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016772 - transferase activity, transferring phosphorus-containing groups [Evidence IEA]; GO_process: GO:0035556 - intracellular signal transduction [Evidence IEA]; GO_process: GO:0006469 - negative regulation of protein kinase activity [Evidence IGI,IMP] [PMID 9482735]; GO_process: GO:0007234 - osmosensory signaling via phosphorelay pathway [Evidence IDA] [PMID 8808622]; GO_process: GO:0018106 - peptidyl-histidine phosphorylation [Evidence IDA] [PMID 8808622]; GO_process: GO:0000160 - phosphorelay signal transduction system [Evidence IEA,IEA]; GO_process: GO:0016310 - phosphorylation [Evidence IEA,IEA]; GO_process: GO:0046777 - protein autophosphorylation [Evidence IDA] [PMID 8808622]; GO_process: GO:0007165 - signal transduction [Evidence IEA]; GO_process: GO:0023014 - signal transduction by phosphorylation [Evidence IEA]; Sln1p 5203182 SLN1 30033536 SLN1 Sugiyamaella lignohabitans Sln1p XP_018735890.1 5200108 D 796027 CDS AWJ20_1705 30033537 5207787..5212853 A 1 NC_031672.1 hypothetical protein; may be involved in positive regulation of 1,3-beta-glucan synthesis and the Pkc1p-MAPK pathway; multicopy suppressor of temperature-sensitive mutations in CDC24 and CDC42, and of mutations in BEM4; potential Cdc28p substrate; relocalizes from bud neck to cytoplasm upon DNA replication stress; GO_component: GO:0005935 - cellular bud neck [Evidence TAS] [PMID 10679030]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 22842922]; GO_component: GO:0005934 - cellular bud tip [Evidence TAS] [PMID 10679030]; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 22842922]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 22842922]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0030010 - establishment of cell polarity [Evidence IGI] [PMID 10679030]; Msb1p 5212853 MSB1 30033537 MSB1 Sugiyamaella lignohabitans Msb1p XP_018735891.1 5207787 D 796027 CDS AWJ20_1706 30033538 complement(5213394..5214956) A 1 NC_031672.1 uncharacterized protein 5214956 30033538 AWJ20_1706 Sugiyamaella lignohabitans uncharacterized protein XP_018735892.1 5213394 R 796027 CDS AWJ20_1707 30033539 complement(5215681..5216580) A 1 NC_031672.1 fork head domain protein, putative 5216580 30033539 AWJ20_1707 Sugiyamaella lignohabitans fork head domain protein, putative XP_018735893.1 5215681 R 796027 CDS AWJ20_1708 30033540 5217620..5218642 A 1 NC_031672.1 Putative mannosyltransferase involved in protein glycosylation; member of the KRE2/MNT1 mannosyltransferase family of type II membrane proteins with a short cytoplasmic N-terminus, a membrane-spanning region and a highly conserved catalytic lumenal domain; GO_component: GO:0005794 - Golgi apparatus [Evidence ISS] [PMID 7975899]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA,IEA]; GO_function: GO:0000030 - mannosyltransferase activity [Evidence IEA]; GO_function: GO:0000030 - mannosyltransferase activity [Evidence ISS] [PMID 7975899]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA]; GO_process: GO:0097502 - mannosylation [Evidence IEA]; GO_process: GO:0006487 - protein N-linked glycosylation [Evidence ISS] [PMID 7975899]; GO_process: GO:0006486 - protein glycosylation [Evidence IEA]; Ktr4p 5218642 KTR4 30033540 KTR4 Sugiyamaella lignohabitans Ktr4p XP_018735894.1 5217620 D 796027 CDS AWJ20_1709 30033541 complement(5218841..5220364) A 1 NC_031672.1 putative serine/threonine protein kinase KIC1 5220364 KIC1 30033541 KIC1 Sugiyamaella lignohabitans putative serine/threonine protein kinase KIC1 XP_018735895.1 5218841 R 796027 CDS AWJ20_1710 30033543 5221579..5224824 A 1 NC_031672.1 Kinesin-related motor protein; required for mitotic spindle assembly, chromosome segregation, and 2 micron plasmid partitioning; functionally redundant with Cin8p for chromosomal but not plasmid functions; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA]; GO_component: GO:0005871 - kinesin complex [Evidence IEA]; GO_component: GO:0005871 - kinesin complex [Evidence TAS] [PMID 9153752]; GO_component: GO:0005874 - microtubule [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_component: GO:0005819 - spindle [Evidence IEA]; GO_component: GO:0005876 - spindle microtubule [Evidence IDA] [PMID 1618910]; GO_component: GO:0005816 - spindle pole body [Evidence IDA] [PMID 9585415]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0008017 - microtubule binding [Evidence IEA]; GO_function: GO:0003777 - microtubule motor activity [Evidence IEA]; GO_function: GO:0003777 - microtubule motor activity [Evidence IGI] [PMID 1618910]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0005200 - structural constituent of cytoskeleton [Evidence IPI] [PMID 9585415]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0007019 - microtubule depolymerization [Evidence IMP] [PMID 19041752]; GO_process: GO:0007018 - microtubule-based movement [Evidence IEA]; GO_process: GO:0007067 - mitotic nuclear division [Evidence IEA]; GO_process: GO:0000070 - mitotic sister chromatid segregation [Evidence IGI] [PMID 7860634]; GO_process: GO:0000022 - mitotic spindle elongation [Evidence IMP] [PMID 9813090]; GO_process: GO:0030541 - plasmid partitioning [Evidence IMP] [PMID 19364922]; GO_process: GO:0090307 - spindle assembly involved in mitosis [Evidence IMP] [PMID 9813090]; GO_process: GO:0000073 - spindle pole body separation [Evidence IGI] [PMID 1618897]; GO_process: GO:0000073 - spindle pole body separation [Evidence IGI] [PMID 1618910]; Kip1p 5224824 KIP1 30033543 KIP1 Sugiyamaella lignohabitans Kip1p XP_018735896.1 5221579 D 796027 CDS AWJ20_1711 30033544 complement(5225023..5225610) A 1 NC_031672.1 uncharacterized protein 5225610 30033544 AWJ20_1711 Sugiyamaella lignohabitans uncharacterized protein XP_018735897.1 5225023 R 796027 CDS AWJ20_1712 30033545 complement(5226253..5227161) A 1 NC_031672.1 Protein midA-like protein 5227161 30033545 AWJ20_1712 Sugiyamaella lignohabitans Protein midA-like protein XP_018735898.1 5226253 R 796027 CDS AWJ20_1713 30033546 5229871..5232810 A 1 NC_031672.1 Mitochondrial C1-tetrahydrofolate synthase; involved in interconversion between different oxidation states of tetrahydrofolate (THF); provides activities of formyl-THF synthetase, methenyl-THF cyclohydrolase, and methylene-THF dehydrogenase; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 3528153]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA,IEA]; GO_function: GO:0004329 - formate-tetrahydrofolate ligase activity [Evidence IEA,IEA]; GO_function: GO:0004329 - formate-tetrahydrofolate ligase activity [Evidence IDA] [PMID 3528153]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0004477 - methenyltetrahydrofolate cyclohydrolase activity [Evidence IEA]; GO_function: GO:0004477 - methenyltetrahydrofolate cyclohydrolase activity [Evidence IDA] [PMID 3528153]; GO_function: GO:0004488 - methylenetetrahydrofolate dehydrogenase (NADP+) activity [Evidence IEA,IEA]; GO_function: GO:0004488 - methylenetetrahydrofolate dehydrogenase (NADP+) activity [Evidence IDA] [PMID 3528153]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0046656 - folic acid biosynthetic process [Evidence IDA] [PMID 3528153]; GO_process: GO:0009396 - folic acid-containing compound biosynthetic process [Evidence IEA]; GO_process: GO:0000105 - histidine biosynthetic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0009086 - methionine biosynthetic process [Evidence IEA]; GO_process: GO:0006139 - nucleobase-containing compound metabolic process [Evidence IMP] [PMID 10781559]; GO_process: GO:0006730 - one-carbon metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0006164 - purine nucleotide biosynthetic process [Evidence IEA]; GO_process: GO:0035999 - tetrahydrofolate interconversion [Evidence IEA]; trifunctional formate-tetrahydrofolate ligase 5232810 MIS1 30033546 MIS1 Sugiyamaella lignohabitans trifunctional formate-tetrahydrofolate ligase XP_018735899.1 5229871 D 796027 CDS AWJ20_1714 30033547 5233144..5235366 A 1 NC_031672.1 Protoporphyrinogen oxidase; a mitochondrial enzyme that catalyzes the seventh step in the heme biosynthetic pathway, converting protoporphyrinogen IX to protoporphyrin IX; inhibited by diphenyl ether-type herbicides; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IDA] [PMID 7798202]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0004729 - oxygen-dependent protoporphyrinogen oxidase activity [Evidence IEA,IEA]; GO_function: GO:0004729 - oxygen-dependent protoporphyrinogen oxidase activity [Evidence IMP] [PMID 7052077]; GO_function: GO:0004729 - oxygen-dependent protoporphyrinogen oxidase activity [Evidence IDA] [PMID 7798202]; GO_process: GO:0006783 - heme biosynthetic process [Evidence IEA]; GO_process: GO:0006783 - heme biosynthetic process [Evidence IMP] [PMID 7035824]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0006779 - porphyrin-containing compound biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0006782 - protoporphyrinogen IX biosynthetic process [Evidence IEA]; oxygen-dependent protoporphyrinogen oxidase 5235366 HEM14 30033547 HEM14 Sugiyamaella lignohabitans oxygen-dependent protoporphyrinogen oxidase XP_018735900.1 5233144 D 796027 CDS AWJ20_1715 30033548 complement(5235508..5236176) A 1 NC_031672.1 v-SNARE protein involved in Golgi transport; homolog of the mammalian protein GOS-28/GS28; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0005797 - Golgi medial cisterna [Evidence IDA] [PMID 16699523]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA,IEA]; GO_component: GO:0031201 - SNARE complex [Evidence IDA] [PMID 11959998]; GO_component: GO:0005801 - cis-Golgi network [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISS,NAS] [PMID 9755865]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0005484 - SNAP receptor activity [Evidence IDA] [PMID 11959998]; GO_process: GO:0006888 - ER to Golgi vesicle-mediated transport [Evidence IEA]; GO_process: GO:0048193 - Golgi vesicle transport [Evidence IMP] [PMID 9755865]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0006906 - vesicle fusion [Evidence IDA] [PMID 11959998]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IEA]; Gos1p 5236176 GOS1 30033548 GOS1 Sugiyamaella lignohabitans Gos1p XP_018735901.1 5235508 R 796027 CDS AWJ20_1716 30033549 5237188..5238675 A 1 NC_031672.1 Mitochondrial cardiolipin-specific phospholipase; functions upstream of Taz1p to generate monolyso-cardiolipin; transcription increases upon genotoxic stress; involved in restricting Ty1 transposition; has homology to mammalian CGI-58; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IDA] [PMID 23637464]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 19244244]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0004623 - phospholipase A2 activity [Evidence IDA,IMP] [PMID 19244244]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0035965 - cardiolipin acyl-chain remodeling [Evidence IMP] [PMID 19244244]; GO_process: GO:0035965 - cardiolipin acyl-chain remodeling [Evidence IMP] [PMID 23637464]; GO_process: GO:0032048 - cardiolipin metabolic process [Evidence IDA,IGI] [PMID 19244244]; Cld1p 5238675 CLD1 30033549 CLD1 Sugiyamaella lignohabitans Cld1p XP_018735902.1 5237188 D 796027 CDS AWJ20_1717 30033550 complement(5238817..5240877) A 1 NC_031672.1 Long chain fatty acyl-CoA synthetase; activates imported fatty acids with a preference for C12:0-C16:0 chain lengths; functions in long chain fatty acid import; important for survival during stationary phase; localized to lipid particles; involved in sphingolipid-to-glycerolipid metabolism; forms cytoplasmic foci upon DNA replication stress; FAA4 has a paralog, FAA1, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005811 - lipid particle [Evidence IDA] [PMID 10515935]; GO_component: GO:0005811 - lipid particle [Evidence IDA] [PMID 24868093]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0004467 - long-chain fatty acid-CoA ligase activity [Evidence IEA]; GO_function: GO:0004467 - long-chain fatty acid-CoA ligase activity [Evidence IGI,IMP] [PMID 11477098]; GO_function: GO:0004467 - long-chain fatty acid-CoA ligase activity [Evidence IGI] [PMID 22633490]; GO_function: GO:0004467 - long-chain fatty acid-CoA ligase activity [Evidence IDA] [PMID 7650027]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006631 - fatty acid metabolic process [Evidence IEA]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0001676 - long-chain fatty acid metabolic process [Evidence IEA]; GO_process: GO:0015909 - long-chain fatty acid transport [Evidence IGI] [PMID 12601005]; GO_process: GO:0035336 - long-chain fatty-acyl-CoA metabolic process [Evidence IGI,IMP] [PMID 11477098]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; long-chain fatty acid-CoA ligase FAA4 5240877 FAA4 30033550 FAA4 Sugiyamaella lignohabitans long-chain fatty acid-CoA ligase FAA4 XP_018735903.1 5238817 R 796027 CDS AWJ20_1718 30033551 5243287..5248053 A 1 NC_031672.1 Essential protein with distinct roles in two nuclear pore subcomplexes; catalyzes its own proteolytic cleavage in vivo to generate a C-terminal fragment that is a structural component of the Nup84p subcomplex (with roles in NPC biogenesis and localization of genes to the nuclear periphery), and an N-terminal fragment that is one of several FG-nucleoporins within the NPC central core directly responsible for nucleocytoplasmic transport; homologous to human NUP98; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0031965 - nuclear membrane [Evidence IEA]; GO_component: GO:0005643 - nuclear pore [Evidence IEA,IEA,IEA]; GO_component: GO:0005643 - nuclear pore [Evidence IDA] [PMID 10684247]; GO_component: GO:0044613 - nuclear pore central transport channel [Evidence IDA] [PMID 18046406]; GO_component: GO:0031080 - nuclear pore outer ring [Evidence IDA] [PMID 11823431]; GO_component: GO:0031080 - nuclear pore outer ring [Evidence IDA] [PMID 18046406]; GO_component: GO:0031080 - nuclear pore outer ring [Evidence IDA] [PMID 9305650]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IDA] [PMID 8044840]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0005487 - nucleocytoplasmic transporter activity [Evidence IPI] [PMID 17418788]; GO_function: GO:0005487 - nucleocytoplasmic transporter activity [Evidence IGI] [PMID 20647373]; GO_function: GO:0017056 - structural constituent of nuclear pore [Evidence IPI] [PMID 17418788]; GO_function: GO:0017056 - structural constituent of nuclear pore [Evidence IMP] [PMID 22331846]; GO_process: GO:0006607 - NLS-bearing protein import into nucleus [Evidence IGI] [PMID 15039779]; GO_process: GO:0006302 - double-strand break repair [Evidence IMP] [PMID 16418532]; GO_process: GO:0051028 - mRNA transport [Evidence IEA]; GO_process: GO:0035392 - maintenance of chromatin silencing at telomere [Evidence IMP] [PMID 16418532]; GO_process: GO:0031081 - nuclear pore distribution [Evidence IMP] [PMID 8195299]; GO_process: GO:0031081 - nuclear pore distribution [Evidence IMP] [PMID 9001245]; GO_process: GO:0031081 - nuclear pore distribution [Evidence IMP] [PMID 9133678]; GO_process: GO:0031081 - nuclear pore distribution [Evidence IMP] [PMID 9305650]; GO_process: GO:0016973 - poly(A)+ mRNA export from nucleus [Evidence IMP] [PMID 8044840]; GO_process: GO:0016973 - poly(A)+ mRNA export from nucleus [Evidence IMP] [PMID 9001245]; GO_process: GO:0016973 - poly(A)+ mRNA export from nucleus [Evidence IMP] [PMID 9133678]; GO_process: GO:0016973 - poly(A)+ mRNA export from nucleus [Evidence IMP] [PMID 9305650]; GO_process: GO:0045893 - positive regulation of transcription, DNA-templated [Evidence IDA] [PMID 15817685]; GO_process: GO:0000973 - posttranscriptional tethering of RNA polymerase II gene DNA at nuclear periphery [Evidence IMP] [PMID 20932479]; GO_process: GO:0006606 - protein import into nucleus [Evidence IGI] [PMID 20647373]; GO_process: GO:0036228 - protein targeting to nuclear inner membrane [Evidence IGI] [PMID 21659568]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006409 - tRNA export from nucleus [Evidence IMP] [PMID 8524308]; GO_process: GO:0034398 - telomere tethering at nuclear periphery [Evidence IMP] [PMID 10638763]; GO_process: GO:0034398 - telomere tethering at nuclear periphery [Evidence IMP] [PMID 11862215]; GO_process: GO:0034398 - telomere tethering at nuclear periphery [Evidence IMP] [PMID 16418532]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; Nup145p 5248053 NUP145 30033551 NUP145 Sugiyamaella lignohabitans Nup145p XP_018735904.1 5243287 D 796027 CDS AWJ20_1719 30033552 5248421..5250115 A 1 NC_031672.1 uncharacterized protein 5250115 30033552 AWJ20_1719 Sugiyamaella lignohabitans uncharacterized protein XP_018735905.1 5248421 D 796027 CDS AWJ20_1720 30033554 complement(5250276..5251250) A 1 NC_031672.1 Essential cytoplasmic iron-sulfur cluster binding protein; forms a complex with Cfd1p that is involved in iron-sulfur protein assembly in the cytosol; similar to P-loop NTPases; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 15728363]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 15728363]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 15728363]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 8921898]; GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA,IEA,IEA]; GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IDA] [PMID 17401378]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016887 - ATPase activity [Evidence IMP,ISS] [PMID 8921898]; GO_function: GO:0005506 - iron ion binding [Evidence IMP,IPI] [PMID 15728363]; GO_function: GO:0051536 - iron-sulfur cluster binding [Evidence IEA,IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0016226 - iron-sulfur cluster assembly [Evidence IEA,IEA]; GO_process: GO:0016226 - iron-sulfur cluster assembly [Evidence IMP] [PMID 15728363]; GO_process: GO:0016226 - iron-sulfur cluster assembly [Evidence IDA] [PMID 17401378]; GO_process: GO:0002098 - tRNA wobble uridine modification [Evidence IMP] [PMID 18755837]; Nbp35p 5251250 NBP35 30033554 NBP35 Sugiyamaella lignohabitans Nbp35p XP_018735906.1 5250276 R 796027 CDS AWJ20_1721 30033555 5253278..5255989 A 1 NC_031672.1 ATP-dependent DNA translocase involved in chromatin remodeling; ATPase component that, with Itc1p, forms a complex required for repression of a-specific genes, INO1, and early meiotic genes during mitotic growth; the Isw2 complex exhibits basal levels of chromatin binding throughout the genome as well as target-specific chromatin interactions; targeted by Ume6p- and Sua7p-dependent DNA looping to many loci genome-wide; GO_component: GO:0008623 - CHRAC [Evidence IPI,ISS] [PMID 14673157]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IPI] [PMID 11238381]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0015616 - DNA translocase activity [Evidence IDA] [PMID 19203228]; GO_function: GO:0003682 - chromatin binding [Evidence IEA]; GO_function: GO:0003682 - chromatin binding [Evidence IDA] [PMID 16227570]; GO_function: GO:0004386 - helicase activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016818 - hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides [Evidence IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0031491 - nucleosome binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0003697 - single-stranded DNA binding [Evidence IDA] [PMID 19203228]; GO_process: GO:0043044 - ATP-dependent chromatin remodeling [Evidence IEA]; GO_process: GO:0016568 - chromatin modification [Evidence IEA]; GO_process: GO:0006338 - chromatin remodeling [Evidence IEA]; GO_process: GO:0006338 - chromatin remodeling [Evidence IMP] [PMID 11238381]; GO_process: GO:0006338 - chromatin remodeling [Evidence IDA,IMP] [PMID 16227570]; GO_process: GO:0000183 - chromatin silencing at rDNA [Evidence IMP] [PMID 17689493]; GO_process: GO:0006348 - chromatin silencing at telomere [Evidence IMP] [PMID 14673157]; GO_process: GO:0006348 - chromatin silencing at telomere [Evidence IMP] [PMID 17689493]; GO_process: GO:0060195 - negative regulation of antisense RNA transcription [Evidence IGI] [PMID 18075583]; GO_process: GO:0046020 - negative regulation of transcription from RNA polymerase II promoter by pheromones [Evidence IMP] [PMID 12624196]; GO_process: GO:0016584 - nucleosome positioning [Evidence IDA] [PMID 15116071]; GO_process: GO:0016584 - nucleosome positioning [Evidence IDA] [PMID 17949749]; GO_process: GO:0034401 - regulation of transcription by chromatin organization [Evidence IMP] [PMID 16227570]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006369 - termination of RNA polymerase II transcription [Evidence IGI] [PMID 12504018]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Isw2p 5255989 ISW2 30033555 ISW2 Sugiyamaella lignohabitans Isw2p XP_018735907.1 5253278 D 796027 CDS AWJ20_1722 30033556 complement(5256161..5256670) A 1 NC_031672.1 Phospholipid hydroperoxide glutathione peroxidase; protects cells from phospholipid hydroperoxides and nonphospholipid peroxides during oxidative stress; induced by glucose starvation; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 21763276]; GO_component: GO:0031314 - extrinsic component of mitochondrial inner membrane [Evidence IDA] [PMID 21763276]; GO_component: GO:0031315 - extrinsic component of mitochondrial outer membrane [Evidence IDA] [PMID 21763276]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0004602 - glutathione peroxidase activity [Evidence IEA,IEA]; GO_function: GO:0004602 - glutathione peroxidase activity [Evidence IMP,ISS] [PMID 10480913]; GO_function: GO:0004602 - glutathione peroxidase activity [Evidence IDA] [PMID 11445588]; GO_function: GO:0004602 - glutathione peroxidase activity [Evidence IDA] [PMID 11875065]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0004601 - peroxidase activity [Evidence IEA]; GO_function: GO:0047066 - phospholipid-hydroperoxide glutathione peroxidase activity [Evidence IDA,IMP] [PMID 11445588]; GO_process: GO:0034599 - cellular response to oxidative stress [Evidence IMP] [PMID 11445588]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0006979 - response to oxidative stress [Evidence IEA]; glutathione peroxidase GPX2 5256670 GPX2 30033556 GPX2 Sugiyamaella lignohabitans glutathione peroxidase GPX2 XP_018735908.1 5256161 R 796027 CDS AWJ20_1723 30033557 5260525..5261358 A 1 NC_031672.1 tRNA ligase; required for tRNA splicing and for both splicing and translation of HAC1 mRNA in the UPR; has phosphodiesterase, polynucleotide kinase, and ligase activities; localized at the inner nuclear envelope and partially to polysomes; GO_component: GO:0005637 - nuclear inner membrane [Evidence IDA] [PMID 3312232]; GO_component: GO:0005844 - polysome [Evidence IDA] [PMID 20844078]; GO_function: GO:0004113 - 2',3'-cyclic-nucleotide 3'-phosphodiesterase activity [Evidence IDA] [PMID 6297798]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0051730 - GTP-dependent polyribonucleotide 5'-hydroxyl-kinase activity [Evidence IDA] [PMID 8428918]; GO_function: GO:0003972 - RNA ligase (ATP) activity [Evidence IEA,IEA]; GO_function: GO:0003972 - RNA ligase (ATP) activity [Evidence IDA] [PMID 3277966]; GO_function: GO:0003972 - RNA ligase (ATP) activity [Evidence IDA] [PMID 3512545]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0004519 - endonuclease activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0004518 - nuclease activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0030969 - UFP-specific transcription factor mRNA processing involved in endoplasmic reticulum unfolded protein response [Evidence IMP] [PMID 8898194]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0090305 - nucleic acid phosphodiester bond hydrolysis [Evidence IEA]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; GO_process: GO:0032056 - positive regulation of translation in response to stress [Evidence IMP,IPI] [PMID 20844078]; GO_process: GO:0008033 - tRNA processing [Evidence IEA]; GO_process: GO:0006388 - tRNA splicing, via endonucleolytic cleavage and ligation [Evidence IEA]; GO_process: GO:0006388 - tRNA splicing, via endonucleolytic cleavage and ligation [Evidence IMP] [PMID 1537841]; GO_process: GO:0006388 - tRNA splicing, via endonucleolytic cleavage and ligation [Evidence IDA] [PMID 2207062]; tRNA ligase 5261358 TRL1 30033557 TRL1 Sugiyamaella lignohabitans tRNA ligase XP_018735909.1 5260525 D 796027 CDS AWJ20_1724 30033558 complement(5261469..5262860) A 1 NC_031672.1 Phosphomevalonate kinase; an essential cytosolic enzyme that acts in the biosynthesis of isoprenoids and sterols, including ergosterol, from mevalonate; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0004631 - phosphomevalonate kinase activity [Evidence IEA]; GO_function: GO:0004631 - phosphomevalonate kinase activity [Evidence IMP] [PMID 1846667]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006696 - ergosterol biosynthetic process [Evidence IMP] [PMID 200835]; GO_process: GO:0010142 - farnesyl diphosphate biosynthetic process, mevalonate pathway [Evidence IMP] [PMID 200835]; GO_process: GO:0019287 - isopentenyl diphosphate biosynthetic process, mevalonate pathway [Evidence IEA]; GO_process: GO:0019287 - isopentenyl diphosphate biosynthetic process, mevalonate pathway [Evidence IMP] [PMID 200835]; GO_process: GO:0008299 - isoprenoid biosynthetic process [Evidence IEA]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0031388 - organic acid phosphorylation [Evidence IMP] [PMID 200835]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; GO_process: GO:0006694 - steroid biosynthetic process [Evidence IEA]; GO_process: GO:0008202 - steroid metabolic process [Evidence IEA]; GO_process: GO:0016126 - sterol biosynthetic process [Evidence IEA]; phosphomevalonate kinase 5262860 ERG8 30033558 ERG8 Sugiyamaella lignohabitans phosphomevalonate kinase XP_018735910.1 5261469 R 796027 CDS AWJ20_1725 30033559 5263082..5263864 A 1 NC_031672.1 Cytochrome c1 heme lyase; involved in maturation of cytochrome c1, which is a subunit of the mitochondrial ubiquinol-cytochrome-c reductase; links heme covalently to apocytochrome c1; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IDA] [PMID 7559417]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0004408 - holocytochrome-c synthase activity [Evidence IEA]; GO_function: GO:0004408 - holocytochrome-c synthase activity [Evidence IMP,ISS] [PMID 1499554]; GO_function: GO:0016829 - lyase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_process: GO:0018063 - cytochrome c-heme linkage [Evidence IMP,ISS] [PMID 1499554]; cytochrome c1 heme lyase CYT2 5263864 CYT2 30033559 CYT2 Sugiyamaella lignohabitans cytochrome c1 heme lyase CYT2 XP_018735911.1 5263082 D 796027 CDS AWJ20_1726 30033560 complement(5264280..5264531) A 1 NC_031672.1 Essential protein of the mitochondrial intermembrane space; forms a complex with Tim9p (TIM10 complex) that delivers hydrophobic proteins to the TIM22 complex for insertion into the inner membrane; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0042719 - mitochondrial intermembrane space protein transporter complex [Evidence IDA] [PMID 9822593]; GO_component: GO:0042719 - mitochondrial intermembrane space protein transporter complex [Evidence IDA] [PMID 9889188]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0008565 - protein transporter activity [Evidence IMP] [PMID 9430585]; GO_function: GO:0008565 - protein transporter activity [Evidence IDA] [PMID 9495346]; GO_function: GO:0051082 - unfolded protein binding [Evidence IDA] [PMID 12138093]; GO_process: GO:0045039 - protein import into mitochondrial inner membrane [Evidence IEA]; GO_process: GO:0045039 - protein import into mitochondrial inner membrane [Evidence IMP] [PMID 9430585]; GO_process: GO:0045039 - protein import into mitochondrial inner membrane [Evidence IDA] [PMID 9495346]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; protein transporter TIM10 5264531 TIM10 30033560 TIM10 Sugiyamaella lignohabitans protein transporter TIM10 XP_018735912.1 5264280 R 796027 CDS AWJ20_1727 30033561 5267116..5267847 A 1 NC_031672.1 mRNA cap binding protein and translation initiation factor eIF4E; the eIF4E-cap complex is responsible for mediating cap-dependent mRNA translation via interactions with translation initiation factor eIF4G (Tif4631p or Tif4632p); protein abundance increases in response to DNA replication stress; mutants are defective for adhesion and pseudohyphal growth; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 8119957]; GO_component: GO:0010494 - cytoplasmic stress granule [Evidence IDA] [PMID 17908917]; GO_component: GO:0010494 - cytoplasmic stress granule [Evidence IDA] [PMID 18981231]; GO_component: GO:0016281 - eukaryotic translation initiation factor 4F complex [Evidence TAS] [PMID 9841679]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 8119957]; GO_component: GO:0005840 - ribosome [Evidence TAS] [PMID 9841679]; GO_function: GO:0003723 - RNA binding [Evidence IEA,IEA]; GO_function: GO:0032266 - phosphatidylinositol-3-phosphate binding [Evidence IDA] [PMID 16343487]; GO_function: GO:0003743 - translation initiation factor activity [Evidence IEA,IEA]; GO_function: GO:0003743 - translation initiation factor activity [Evidence ISS] [PMID 3062383]; GO_process: GO:0000184 - nuclear-transcribed mRNA catabolic process, nonsense-mediated decay [Evidence IDA,IPI] [PMID 15753296]; GO_process: GO:0051726 - regulation of cell cycle [Evidence IMP] [PMID 2540596]; GO_process: GO:0006417 - regulation of translation [Evidence IEA]; GO_process: GO:0006412 - translation [Evidence IEA]; GO_process: GO:0006413 - translational initiation [Evidence IEA,IEA]; GO_process: GO:0006413 - translational initiation [Evidence ISS] [PMID 3062383]; translation initiation factor eIF4E 5267847 CDC33 30033561 CDC33 Sugiyamaella lignohabitans translation initiation factor eIF4E XP_018735913.1 5267116 D 796027 CDS AWJ20_1728 30033562 complement(5268144..5269580) A 1 NC_031672.1 Myb-related protein A 5269580 30033562 AWJ20_1728 Sugiyamaella lignohabitans Myb-related protein A XP_018735914.1 5268144 R 796027 CDS AWJ20_1729 30033563 5271967..5275515 A 1 NC_031672.1 Calcium/H+ antiporter localized to the endoplasmic reticulum membrane; member of the calcium exchanger (CAX) family; potential Cdc28p substrate; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IDA] [PMID 20578725]; GO_component: GO:0000324 - fungal-type vacuole [Evidence IDA] [PMID 17588950]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 20709757]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0015369 - calcium:proton antiporter activity [Evidence IMP] [PMID 20578725]; GO_function: GO:0015386 - potassium:proton antiporter activity [Evidence IMP] [PMID 17588950]; GO_function: GO:0015385 - sodium:proton antiporter activity [Evidence IMP] [PMID 17588950]; GO_process: GO:0006818 - hydrogen transport [Evidence IMP] [PMID 20578725]; GO_process: GO:0006811 - ion transport [Evidence IEA]; GO_process: GO:0006813 - potassium ion transport [Evidence IMP] [PMID 17588950]; GO_process: GO:0006814 - sodium ion transport [Evidence IEA]; GO_process: GO:0006814 - sodium ion transport [Evidence IMP] [PMID 17588950]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Vnx1p 5275515 VNX1 30033563 VNX1 Sugiyamaella lignohabitans Vnx1p XP_018735915.1 5271967 D 796027 CDS AWJ20_1730 30033565 5275963..5276874 A 1 NC_031672.1 uncharacterized protein 5276874 30033565 AWJ20_1730 Sugiyamaella lignohabitans uncharacterized protein XP_018735916.1 5275963 D 796027 CDS AWJ20_1731 30033566 complement(5276979..5277965) A 1 NC_031672.1 Enoyl reductase; catalyzes the last step in each cycle of very long chain fatty acid elongation; localizes to the ER, highly enriched in a structure marking nuclear-vacuolar junctions; coimmunoprecipitates with elongases Fen1p and Sur4p; protein increases in abundance and relative distribution to ER foci increases upon DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 22842922]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IDA,IGI,ISS] [PMID 11113186]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IMP,ISS] [PMID 11113186]; GO_function: GO:0016627 - oxidoreductase activity, acting on the CH-CH group of donors [Evidence IEA]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA,IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; GO_process: GO:0000038 - very long-chain fatty acid metabolic process [Evidence IGI,IMP,IPI] [PMID 11113186]; trans-2-enoyl-CoA reductase (NADPH) TSC13 5277965 TSC13 30033566 TSC13 Sugiyamaella lignohabitans trans-2-enoyl-CoA reductase (NADPH) TSC13 XP_018735917.1 5276979 R 796027 CDS AWJ20_1732 30033567 5278548..5281133 A 1 NC_031672.1 Protein kinase of unknown cellular role; binds phosphatidylinositols and cardiolipin in a large-scale study; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0004672 - protein kinase activity [Evidence IEA]; GO_function: GO:0004672 - protein kinase activity [Evidence IDA] [PMID 16319894]; GO_function: GO:0004672 - protein kinase activity [Evidence ISS] [PMID 9020587]; GO_function: GO:0004674 - protein serine/threonine kinase activity [Evidence IEA,IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016772 - transferase activity, transferring phosphorus-containing groups [Evidence IEA]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; GO_process: GO:0006468 - protein phosphorylation [Evidence IEA]; GO_process: GO:0006468 - protein phosphorylation [Evidence IDA] [PMID 16319894]; non-specific serine/threonine protein kinase 5281133 30033567 AWJ20_1732 Sugiyamaella lignohabitans non-specific serine/threonine protein kinase XP_018735918.1 5278548 D 796027 CDS AWJ20_1733 30033568 complement(5281255..5284404) A 1 NC_031672.1 Cytosolic leucyl tRNA synthetase; ligates leucine to the appropriate tRNA; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 9742237]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0002161 - aminoacyl-tRNA editing activity [Evidence IEA]; GO_function: GO:0004812 - aminoacyl-tRNA ligase activity [Evidence IEA,IEA]; GO_function: GO:0004823 - leucine-tRNA ligase activity [Evidence IEA,IEA]; GO_function: GO:0004823 - leucine-tRNA ligase activity [Evidence IDA] [PMID 9742237]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_process: GO:0006429 - leucyl-tRNA aminoacylation [Evidence IEA]; GO_process: GO:0006429 - leucyl-tRNA aminoacylation [Evidence IDA] [PMID 9742237]; GO_process: GO:0032006 - regulation of TOR signaling [Evidence IMP,IPI] [PMID 22424774]; GO_process: GO:0006450 - regulation of translational fidelity [Evidence IEA]; GO_process: GO:0006418 - tRNA aminoacylation for protein translation [Evidence IEA]; GO_process: GO:0006412 - translation [Evidence IEA]; leucine--tRNA ligase CDC60 5284404 CDC60 30033568 CDC60 Sugiyamaella lignohabitans leucine--tRNA ligase CDC60 XP_018735919.1 5281255 R 796027 CDS AWJ20_1734 30033569 complement(5285025..5286323) A 1 NC_031672.1 Gamma subunit of the translation initiation factor eIF2B; the guanine-nucleotide exchange factor for eIF2; activity subsequently regulated by phosphorylated eIF2; first identified as a negative regulator of GCN4 expression; GO_component: GO:0005851 - eukaryotic translation initiation factor 2B complex [Evidence IDA] [PMID 8506384]; GO_component: GO:0032045 - guanyl-nucleotide exchange factor complex [Evidence IDA] [PMID 8506384]; GO_component: GO:0032045 - guanyl-nucleotide exchange factor complex [Evidence IDA,IPI] [PMID 9472020]; GO_function: GO:0005085 - guanyl-nucleotide exchange factor activity [Evidence IDA] [PMID 8506384]; GO_function: GO:0005085 - guanyl-nucleotide exchange factor activity [Evidence IDA,IPI] [PMID 9472020]; GO_function: GO:0003743 - translation initiation factor activity [Evidence IEA]; GO_function: GO:0003743 - translation initiation factor activity [Evidence IMP] [PMID 11707417]; GO_function: GO:0003743 - translation initiation factor activity [Evidence IMP,IPI] [PMID 2038327]; GO_process: GO:0006417 - regulation of translation [Evidence IEA]; GO_process: GO:0006446 - regulation of translational initiation [Evidence IMP] [PMID 1986242]; GO_process: GO:0006446 - regulation of translational initiation [Evidence IMP] [PMID 2038327]; GO_process: GO:0006446 - regulation of translational initiation [Evidence IGI,IMP] [PMID 3516411]; GO_process: GO:0006446 - regulation of translational initiation [Evidence IMP] [PMID 3915540]; GO_process: GO:0006446 - regulation of translational initiation [Evidence IDA] [PMID 8506384]; GO_process: GO:0006412 - translation [Evidence IEA]; GO_process: GO:0006413 - translational initiation [Evidence IEA]; Gcd1p 5286323 GCD1 30033569 GCD1 Sugiyamaella lignohabitans Gcd1p XP_018735920.1 5285025 R 796027 CDS AWJ20_1735 30033570 5286954..5287184 A 1 NC_031672.1 ATPase of the 19S regulatory particle of the 26S proteasome; one of six ATPases of the regulatory particle; involved in degradation of ubiquitinated substrates; contributes preferentially to ERAD; required for spindle pole body duplication; mainly nuclear localization; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 10419517]; GO_component: GO:0000502 - proteasome complex [Evidence IEA]; GO_component: GO:0008540 - proteasome regulatory particle, base subcomplex [Evidence IDA] [PMID 11742986]; GO_component: GO:0008540 - proteasome regulatory particle, base subcomplex [Evidence IDA] [PMID 9741626]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016887 - ATPase activity [Evidence ISS] [PMID 8955118]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_function: GO:0019904 - protein domain specific binding [Evidence IDA] [PMID 11418596]; GO_process: GO:0030433 - ER-associated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 18174173]; GO_process: GO:0006289 - nucleotide-excision repair [Evidence IGI] [PMID 11410533]; GO_process: GO:0045899 - positive regulation of RNA polymerase II transcriptional preinitiation complex assembly [Evidence IMP] [PMID 19843524]; GO_process: GO:0032968 - positive regulation of transcription elongation from RNA polymerase II promoter [Evidence IMP] [PMID 11389845]; GO_process: GO:0070682 - proteasome regulatory particle assembly [Evidence IMP] [PMID 19412160]; GO_process: GO:0030163 - protein catabolic process [Evidence IEA]; proteasome regulatory particle base subunit RPT4 5287184 RPT4 30033570 RPT4 Sugiyamaella lignohabitans proteasome regulatory particle base subunit RPT4 XP_018735921.1 5286954 D 796027 CDS AWJ20_1736 30033571 5287485..5288333 A 1 NC_031672.1 ATPase of the 19S regulatory particle of the 26S proteasome; one of six ATPases of the regulatory particle; involved in degradation of ubiquitinated substrates; contributes preferentially to ERAD; required for spindle pole body duplication; mainly nuclear localization; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 10419517]; GO_component: GO:0000502 - proteasome complex [Evidence IEA]; GO_component: GO:0008540 - proteasome regulatory particle, base subcomplex [Evidence IDA] [PMID 11742986]; GO_component: GO:0008540 - proteasome regulatory particle, base subcomplex [Evidence IDA] [PMID 9741626]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016887 - ATPase activity [Evidence ISS] [PMID 8955118]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_function: GO:0019904 - protein domain specific binding [Evidence IDA] [PMID 11418596]; GO_process: GO:0030433 - ER-associated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 18174173]; GO_process: GO:0006289 - nucleotide-excision repair [Evidence IGI] [PMID 11410533]; GO_process: GO:0045899 - positive regulation of RNA polymerase II transcriptional preinitiation complex assembly [Evidence IMP] [PMID 19843524]; GO_process: GO:0032968 - positive regulation of transcription elongation from RNA polymerase II promoter [Evidence IMP] [PMID 11389845]; GO_process: GO:0070682 - proteasome regulatory particle assembly [Evidence IMP] [PMID 19412160]; GO_process: GO:0030163 - protein catabolic process [Evidence IEA]; proteasome regulatory particle base subunit RPT4 5288333 RPT4 30033571 RPT4 Sugiyamaella lignohabitans proteasome regulatory particle base subunit RPT4 XP_018735922.1 5287485 D 796027 CDS AWJ20_1737 30033572 complement(5288532..5290058) A 1 NC_031672.1 N-acetyltransferase (predicted) 5290058 30033572 AWJ20_1737 Sugiyamaella lignohabitans N-acetyltransferase (predicted) XP_018735923.1 5288532 R 796027 CDS AWJ20_1738 30033573 complement(5291143..5292570) A 1 NC_031672.1 N-acetyltransferase (predicted) 5292570 30033573 AWJ20_1738 Sugiyamaella lignohabitans N-acetyltransferase (predicted) XP_018735924.1 5291143 R 796027 CDS AWJ20_1739 30033574 complement(5293559..5294071) A 1 NC_031672.1 DNA 5' AMP hydrolase involved in DNA repair; member of the histidine triad (HIT) superfamily of nucleotide-binding proteins; homolog of Aprataxin, a Hint related protein that is mutated in individuals with ataxia with oculomotor apraxia; relative distribution to nuclear foci decreases upon DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_function: GO:0033699 - DNA 5'-adenosine monophosphate hydrolase activity [Evidence IDA] [PMID 16964241]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_process: GO:0006281 - DNA repair [Evidence IEA]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IGI,IMP] [PMID 20399152]; Hnt3p 5294071 HNT3 30033574 HNT3 Sugiyamaella lignohabitans Hnt3p XP_018735925.1 5293559 R 796027 CDS AWJ20_1740 30033576 5295229..5296539 A 1 NC_031672.1 Conserved ER protein translocation channel; essential subunit of Sec61 complex (Sec61p, Sbh1p, and Sss1p); forms channel for SRP-dependent protein import; with Sec63 complex allows SRP-independent protein import into ER; involved in posttranslational soluble protein import into the ER, ERAD of soluble substrates, and misfolded soluble protein export from the ER; GO_component: GO:0005784 - Sec61 translocon complex [Evidence IDA] [PMID 8612571]; GO_component: GO:0005784 - Sec61 translocon complex [Evidence IDA] [PMID 9252322]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_function: GO:0015450 - P-P-bond-hydrolysis-driven protein transmembrane transporter activity [Evidence IMP] [PMID 1550957]; GO_function: GO:0015450 - P-P-bond-hydrolysis-driven protein transmembrane transporter activity [Evidence IDA] [PMID 9252322]; GO_function: GO:0015197 - peptide transporter activity [Evidence IMP] [PMID 10758167]; GO_function: GO:0005048 - signal sequence binding [Evidence IDA] [PMID 12134063]; GO_process: GO:0030433 - ER-associated ubiquitin-dependent protein catabolic process [Evidence IPI] [PMID 19696741]; GO_process: GO:0030433 - ER-associated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 24314051]; GO_process: GO:0006616 - SRP-dependent cotranslational protein targeting to membrane, translocation [Evidence IDA] [PMID 11076036]; GO_process: GO:0044743 - intracellular protein transmembrane import [Evidence IMP] [PMID 24314051]; GO_process: GO:0070843 - misfolded protein transport [Evidence IMP] [PMID 24314051]; GO_process: GO:0031204 - posttranslational protein targeting to membrane, translocation [Evidence IDA] [PMID 7758110]; GO_process: GO:0031204 - posttranslational protein targeting to membrane, translocation [Evidence IDA] [PMID 9252322]; GO_process: GO:0031204 - posttranslational protein targeting to membrane, translocation [Evidence IMP] [PMID 9843581]; GO_process: GO:0015031 - protein transport [Evidence IEA,IEA]; GO_process: GO:0030970 - retrograde protein transport, ER to cytosol [Evidence IMP] [PMID 10635318]; GO_process: GO:0030970 - retrograde protein transport, ER to cytosol [Evidence IMP] [PMID 9303298]; GO_process: GO:0006810 - transport [Evidence IEA]; translocon subunit SEC61 5296539 SEC61 30033576 SEC61 Sugiyamaella lignohabitans translocon subunit SEC61 XP_018735926.1 5295229 D 796027 CDS AWJ20_1741 30033577 5298975..5299310 A 1 NC_031672.1 uncharacterized protein 5299310 30033577 AWJ20_1741 Sugiyamaella lignohabitans uncharacterized protein XP_018735927.1 5298975 D 796027 CDS AWJ20_1742 30033578 5305069..5306742 A 1 NC_031672.1 tyrosine protein phosphatase YVH1 5306742 YVH1 30033578 YVH1 Sugiyamaella lignohabitans tyrosine protein phosphatase YVH1 XP_018735928.1 5305069 D 796027 CDS AWJ20_1743 30033579 complement(5306963..5309650) A 1 NC_031672.1 Aminopeptidase yscII; may have a role in obtaining leucine from dipeptide substrates; APE2 has a paralog, AAP1, that arose from the whole genome duplication; GO_component: GO:0030287 - cell wall-bounded periplasmic space [Evidence IDA] [PMID 383482]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005576 - extracellular region [Evidence IDA] [PMID 383482]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0042597 - periplasmic space [Evidence IEA,IEA]; GO_function: GO:0004177 - aminopeptidase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0070006 - metalloaminopeptidase activity [Evidence IDA] [PMID 6352682]; GO_function: GO:0008237 - metallopeptidase activity [Evidence IEA,IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0043171 - peptide catabolic process [Evidence IMP] [PMID 3286257]; GO_process: GO:0043171 - peptide catabolic process [Evidence IDA] [PMID 6352682]; GO_process: GO:0006508 - proteolysis [Evidence IEA,IEA]; Ape2p 5309650 APE2 30033579 APE2 Sugiyamaella lignohabitans Ape2p XP_018735929.1 5306963 R 796027 CDS AWJ20_1744 30033580 complement(5310419..5311219) A 1 NC_031672.1 Uncharacterized protein YKL187C 5311219 30033580 AWJ20_1744 Sugiyamaella lignohabitans Uncharacterized protein YKL187C XP_018735930.1 5310419 R 796027 CDS AWJ20_1745 30033581 5314283..5316616 A 1 NC_031672.1 uncharacterized protein 5316616 30033581 AWJ20_1745 Sugiyamaella lignohabitans uncharacterized protein XP_018735931.1 5314283 D 796027 CDS AWJ20_1746 30033582 complement(5316854..5317486) A 1 NC_031672.1 RNA binding protein, component of the U1 snRNP protein; mutants are defective in meiotic recombination and in formation of viable spores, involved in the formation of DSBs through meiosis-specific splicing of REC107 pre-mRNA; Nam8p regulon embraces the meiotic pre-mRNAs of REC107, HFM1, AMA1 SPO22 and PCH2; the putative RNA binding domains RRM2 and RRM3 are required for Nam8p meiotic function; GO_component: GO:0005685 - U1 snRNP [Evidence IDA] [PMID 9630245]; GO_component: GO:0071004 - U2-type prespliceosome [Evidence IDA] [PMID 16618970]; GO_component: GO:0000243 - commitment complex [Evidence IPI] [PMID 10072386]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 23222640]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 23222640]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IPI] [PMID 10072385]; GO_function: GO:0003729 - mRNA binding [Evidence IPI] [PMID 10072386]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0006376 - mRNA splice site selection [Evidence IMP] [PMID 10072385]; GO_process: GO:0000398 - mRNA splicing, via spliceosome [Evidence IPI] [PMID 10072386]; GO_process: GO:0048026 - positive regulation of mRNA splicing, via spliceosome [Evidence IMP] [PMID 10983980]; Nam8p 5317486 NAM8 30033582 NAM8 Sugiyamaella lignohabitans Nam8p XP_018735932.1 5316854 R 796027 CDS AWJ20_1747 30033583 5317639..5318976 A 1 NC_031672.1 Subunit of COMPASS (Set1C); a complex which methylates histone H3 on lysine 4 and is required in telomeric transcriptional silencing; interacts with Orc2p; PHD finger domain protein similar to human CGBP, an unmethylated CpG binding protein; relocalizes to the cytosol in response to hypoxia; GO_component: GO:0048188 - Set1C/COMPASS complex [Evidence IPI] [PMID 11687631]; GO_component: GO:0048188 - Set1C/COMPASS complex [Evidence IPI] [PMID 11742990]; GO_component: GO:0048188 - Set1C/COMPASS complex [Evidence IPI] [PMID 11752412]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 22932476]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22932476]; GO_function: GO:0003682 - chromatin binding [Evidence IDA] [PMID 18845545]; GO_function: GO:0042800 - histone methyltransferase activity (H3-K4 specific) [Evidence IDA] [PMID 11742990]; GO_function: GO:0042800 - histone methyltransferase activity (H3-K4 specific) [Evidence IMP] [PMID 11752412]; GO_function: GO:0042800 - histone methyltransferase activity (H3-K4 specific) [Evidence IDA] [PMID 11805083]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0035064 - methylated histone binding [Evidence IDA] [PMID 17142463]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0006348 - chromatin silencing at telomere [Evidence IMP] [PMID 11687631]; GO_process: GO:0006348 - chromatin silencing at telomere [Evidence IMP] [PMID 11752412]; GO_process: GO:0006348 - chromatin silencing at telomere [Evidence IMP] [PMID 11805083]; GO_process: GO:0051568 - histone H3-K4 methylation [Evidence IDA] [PMID 11742990]; GO_process: GO:0051568 - histone H3-K4 methylation [Evidence IDA,IMP] [PMID 11752412]; GO_process: GO:0051568 - histone H3-K4 methylation [Evidence IDA] [PMID 11805083]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IMP] [PMID 11687631]; Spp1p 5318976 SPP1 30033583 SPP1 Sugiyamaella lignohabitans Spp1p XP_018735933.1 5317639 D 796027 CDS AWJ20_1748 30033584 complement(join(5319146..5320312,5321126..5321131)) A 1 NC_031672.1 Subunit of the Hat1p-Hat2p histone acetyltransferase complex; required for high affinity binding of the complex to free histone H4, thereby enhancing Hat1p activity; similar to human RbAp46 and 48; has a role in telomeric silencing; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 8858151]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 9575221]; GO_component: GO:0000123 - histone acetyltransferase complex [Evidence IPI] [PMID 14761951]; GO_component: GO:0000123 - histone acetyltransferase complex [Evidence IDA,IPI] [PMID 8858151]; GO_component: GO:0000123 - histone acetyltransferase complex [Evidence IDA] [PMID 9575221]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14761951]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9575221]; GO_function: GO:0004402 - histone acetyltransferase activity [Evidence IDA,IMP] [PMID 8858151]; GO_function: GO:0004402 - histone acetyltransferase activity [Evidence IMP] [PMID 9575221]; GO_function: GO:0042393 - histone binding [Evidence IDA] [PMID 8858151]; GO_process: GO:0006281 - DNA repair [Evidence IEA]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0006333 - chromatin assembly or disassembly [Evidence IDA] [PMID 8858151]; GO_process: GO:0016568 - chromatin modification [Evidence IEA]; GO_process: GO:0006348 - chromatin silencing at telomere [Evidence IGI] [PMID 10982821]; GO_process: GO:0016573 - histone acetylation [Evidence IDA,IMP] [PMID 8858151]; GO_process: GO:0016573 - histone acetylation [Evidence IMP] [PMID 9575221]; Hat2p 5321131 HAT2 30033584 HAT2 Sugiyamaella lignohabitans Hat2p XP_018735934.1 5319146 R 796027 CDS AWJ20_1749 30033585 complement(5322714..5323661) A 1 NC_031672.1 uncharacterized protein 5323661 30033585 AWJ20_1749 Sugiyamaella lignohabitans uncharacterized protein XP_018735935.1 5322714 R 796027 CDS AWJ20_1750 30033587 5325257..5327227 A 1 NC_031672.1 uncharacterized protein 5327227 30033587 AWJ20_1750 Sugiyamaella lignohabitans uncharacterized protein XP_018735936.1 5325257 D 796027 CDS AWJ20_1751 30033588 complement(5328648..5329835) A 1 NC_031672.1 GTPase activating protein (GAP) for Gsp1p; involved in nuclear transport; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 2116418]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 8755533]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 8755533]; GO_function: GO:0005096 - GTPase activator activity [Evidence IEA]; GO_function: GO:0005098 - Ran GTPase activator activity [Evidence IEA]; GO_function: GO:0005098 - Ran GTPase activator activity [Evidence IMP] [PMID 7657689]; GO_function: GO:0005098 - Ran GTPase activator activity [Evidence IDA] [PMID 9305944]; GO_process: GO:0006404 - RNA import into nucleus [Evidence IMP] [PMID 16040803]; GO_process: GO:0006348 - chromatin silencing at telomere [Evidence IMP] [PMID 17904525]; GO_process: GO:0043547 - positive regulation of GTPase activity [Evidence IEA]; GO_process: GO:0032853 - positive regulation of Ran GTPase activity [Evidence IEA]; GO_process: GO:0006606 - protein import into nucleus [Evidence IDA] [PMID 7657689]; GO_process: GO:0006407 - rRNA export from nucleus [Evidence IMP] [PMID 11739405]; GO_process: GO:0000054 - ribosomal subunit export from nucleus [Evidence IMP] [PMID 11739405]; GO_process: GO:0006409 - tRNA export from nucleus [Evidence IGI,IMP] [PMID 22008473]; Rna1p 5329835 RNA1 30033588 RNA1 Sugiyamaella lignohabitans Rna1p XP_018735937.1 5328648 R 796027 CDS AWJ20_1752 30033589 5330617..5331357 A 1 NC_031672.1 Co-chaperone that binds Hsp82p and activates its ATPase activity; plays a role in determining prion variants; similar to Hch1p; expression is regulated by stresses such as heat shock; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IPI] [PMID 12504007]; GO_function: GO:0001671 - ATPase activator activity [Evidence IEA]; GO_function: GO:0001671 - ATPase activator activity [Evidence IDA] [PMID 12504007]; GO_function: GO:0001671 - ATPase activator activity [Evidence IDA] [PMID 12604615]; GO_function: GO:0051087 - chaperone binding [Evidence IEA]; GO_function: GO:0051087 - chaperone binding [Evidence IDA] [PMID 12504007]; GO_process: GO:0034605 - cellular response to heat [Evidence IMP] [PMID 12504007]; GO_process: GO:0032781 - positive regulation of ATPase activity [Evidence IEA]; GO_process: GO:0006457 - protein folding [Evidence IMP,IPI] [PMID 12504007]; GO_process: GO:0006950 - response to stress [Evidence IEA,IEA]; Aha1p 5331357 AHA1 30033589 AHA1 Sugiyamaella lignohabitans Aha1p XP_018735938.1 5330617 D 796027 CDS AWJ20_1753 30033590 complement(5331519..5333501) A 1 NC_031672.1 similar to S. cerevisiae VPS72 (YDR485C) involved in vacuolar protein sorting; Ca20C1.06c; allele of CaO19.3399; putative vacuolar protein sorting protein 5333501 VPS72 30033590 VPS72 Sugiyamaella lignohabitans putative vacuolar protein sorting protein XP_018735939.1 5331519 R 796027 CDS AWJ20_1756 30033593 5337564..5338847 A 1 NC_031672.1 Cytoplasmic tryptophanyl-tRNA synthetase; aminoacylates tryptophanyl-tRNA; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004812 - aminoacyl-tRNA ligase activity [Evidence IEA,IEA]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_function: GO:0004830 - tryptophan-tRNA ligase activity [Evidence IEA,IEA]; GO_function: GO:0004830 - tryptophan-tRNA ligase activity [Evidence IDA] [PMID 9046085]; GO_process: GO:0006418 - tRNA aminoacylation for protein translation [Evidence IEA]; GO_process: GO:0006412 - translation [Evidence IEA]; GO_process: GO:0006436 - tryptophanyl-tRNA aminoacylation [Evidence IEA]; GO_process: GO:0006436 - tryptophanyl-tRNA aminoacylation [Evidence TAS] [PMID 10950302]; tryptophan--tRNA ligase WRS1 5338847 WRS1 30033593 WRS1 Sugiyamaella lignohabitans tryptophan--tRNA ligase WRS1 XP_018735940.1 5337564 D 796027 CDS AWJ20_1757 30033594 complement(5338965..5339582) A 1 NC_031672.1 3,4-dihydroxy-2-butanone-4-phosphate synthase (DHBP synthase); required for riboflavin biosynthesis from ribulose-5-phosphate, also has an unrelated function in mitochondrial respiration; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 12595523]; GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IDA] [PMID 12595523]; GO_function: GO:0008686 - 3,4-dihydroxy-2-butanone-4-phosphate synthase activity [Evidence IEA,IEA]; GO_function: GO:0008686 - 3,4-dihydroxy-2-butanone-4-phosphate synthase activity [Evidence IMP] [PMID 7559556]; GO_function: GO:0016829 - lyase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_process: GO:0009060 - aerobic respiration [Evidence IMP] [PMID 12595523]; GO_process: GO:0009231 - riboflavin biosynthetic process [Evidence IEA,IEA,IEA]; GO_process: GO:0009231 - riboflavin biosynthetic process [Evidence IMP] [PMID 5366000]; 3,4-dihydroxy-2-butanone-4-phosphate synthase RIB3 5339582 RIB3 30033594 RIB3 Sugiyamaella lignohabitans 3,4-dihydroxy-2-butanone-4-phosphate synthase RIB3 XP_018735941.1 5338965 R 796027 CDS AWJ20_1758 30033595 5341554..5343041 A 1 NC_031672.1 Mitochondrial aldehyde dehydrogenase; required for growth on ethanol and conversion of acetaldehyde to acetate; phosphorylated; activity is K+ dependent; utilizes NADP+ or NAD+ equally as coenzymes; expression is glucose repressed; can substitute for cytosolic NADP-dependent aldehyde dehydrogenase when directed to the cytosol; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA]; GO_component: GO:0042645 - mitochondrial nucleoid [Evidence IDA] [PMID 10869431]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 11502169]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0004029 - aldehyde dehydrogenase (NAD) activity [Evidence IDA] [PMID 9473035]; GO_function: GO:0004029 - aldehyde dehydrogenase (NAD) activity [Evidence IMP] [PMID 9675847]; GO_function: GO:0004030 - aldehyde dehydrogenase [NAD(P)+] activity [Evidence IEA]; GO_function: GO:0004030 - aldehyde dehydrogenase [NAD(P)+] activity [Evidence IDA] [PMID 9473035]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0016620 - oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor [Evidence IEA]; GO_process: GO:0006740 - NADPH regeneration [Evidence IGI] [PMID 19158096]; GO_process: GO:0019413 - acetate biosynthetic process [Evidence IGI] [PMID 10919763]; GO_process: GO:0006067 - ethanol metabolic process [Evidence IMP] [PMID 9675847]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0006090 - pyruvate metabolic process [Evidence IMP] [PMID 10409655]; aldehyde dehydrogenase (NADP(+)) ALD4 5343041 ALD4 30033595 ALD4 Sugiyamaella lignohabitans aldehyde dehydrogenase (NADP(+)) ALD4 XP_018735942.1 5341554 D 796027 CDS AWJ20_1759 30033596 5344489..5351766 A 1 NC_031672.1 cell surface glycoprotein (predicted) 5351766 30033596 AWJ20_1759 Sugiyamaella lignohabitans cell surface glycoprotein (predicted) XP_018735943.1 5344489 D 796027 CDS AWJ20_1760 30033598 5353171..5355306 A 1 NC_031672.1 serine/threonine protein kinase SKY1 5355306 SKY1 30033598 SKY1 Sugiyamaella lignohabitans serine/threonine protein kinase SKY1 XP_018735944.1 5353171 D 796027 CDS AWJ20_1761 30033599 complement(5355455..5356564) A 1 NC_031672.1 Component of a complex containing Cef1p; putatively involved in pre-mRNA splicing; has similarity to S. pombe Cwf27p; protein abundance increases in response to DNA replication stress; GO_component: GO:0005684 - U2-type spliceosomal complex [Evidence IDA] [PMID 11884590]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005681 - spliceosomal complex [Evidence IEA]; GO_function: GO:0016853 - isomerase activity [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0003755 - peptidyl-prolyl cis-trans isomerase activity [Evidence IEA,IEA,IEA]; GO_process: GO:0008380 - RNA splicing [Evidence IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0006457 - protein folding [Evidence IEA,IEA]; GO_process: GO:0000413 - protein peptidyl-prolyl isomerization [Evidence IEA,IEA,IEA]; putative peptidylprolyl isomerase CWC27 5356564 CWC27 30033599 CWC27 Sugiyamaella lignohabitans putative peptidylprolyl isomerase CWC27 XP_018735945.1 5355455 R 796027 CDS AWJ20_1762 30033600 5356791..5358995 A 1 NC_031672.1 Glutamyl-tRNA synthetase (GluRS); forms a complex with methionyl-tRNA synthetase (Mes1p) and Arc1p; complex formation increases the catalytic efficiency of both tRNA synthetases and ensures their correct localization to the cytoplasm; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 23222640]; GO_component: GO:0017102 - methionyl glutamyl tRNA synthetase complex [Evidence IDA] [PMID 11069915]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 19417106]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0004812 - aminoacyl-tRNA ligase activity [Evidence IEA,IEA]; GO_function: GO:0004818 - glutamate-tRNA ligase activity [Evidence IEA,IEA]; GO_function: GO:0004818 - glutamate-tRNA ligase activity [Evidence IDA] [PMID 11069915]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0016876 - ligase activity, forming aminoacyl-tRNA and related compounds [Evidence IEA]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_process: GO:0006424 - glutamyl-tRNA aminoacylation [Evidence IEA]; GO_process: GO:0006424 - glutamyl-tRNA aminoacylation [Evidence IDA] [PMID 11069915]; GO_process: GO:0043039 - tRNA aminoacylation [Evidence IEA]; GO_process: GO:0006418 - tRNA aminoacylation for protein translation [Evidence IEA]; GO_process: GO:0006412 - translation [Evidence IEA,IEA]; glutamate--tRNA ligase GUS1 5358995 GUS1 30033600 GUS1 Sugiyamaella lignohabitans glutamate--tRNA ligase GUS1 XP_018735946.1 5356791 D 796027 CDS AWJ20_1763 30033601 complement(5360586..5363054) A 1 NC_031672.1 Cytosolic protein required for sporulation; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0007126 - meiotic nuclear division [Evidence IEA]; GO_process: GO:0030435 - sporulation resulting in formation of a cellular spore [Evidence IEA]; Rmd8p 5363054 RMD8 30033601 RMD8 Sugiyamaella lignohabitans Rmd8p XP_018735947.1 5360586 R 796027 CDS AWJ20_1764 30033602 5363716..5365371 A 1 NC_031672.1 Subunit of RNAPII-associated chromatin remodeling Paf1 complex; regulates gene expression by directing cotranscriptional histone modification, influences transcription and chromatin structure through several independent functional domains; directly or indirectly regulates DNA-binding properties of Spt15p and relative activities of different TATA elements; involved in transcription elongation as demonstrated by the G-less-based run-on (GLRO) assay; GO_component: GO:0016593 - Cdc73/Paf1 complex [Evidence IPI] [PMID 11884586]; GO_component: GO:0016593 - Cdc73/Paf1 complex [Evidence IPI] [PMID 11927560]; GO_component: GO:0005654 - nucleoplasm [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 15643076]; GO_component: GO:0035327 - transcriptionally active chromatin [Evidence IDA] [PMID 12682017]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IDA] [PMID 20732871]; GO_function: GO:1990269 - RNA polymerase II C-terminal domain phosphoserine binding [Evidence IDA] [PMID 22796944]; GO_function: GO:0001076 - RNA polymerase II transcription factor binding transcription factor activity [Evidence IPI] [PMID 11927560]; GO_process: GO:0006352 - DNA-templated transcription, initiation [Evidence IEA]; GO_process: GO:0006353 - DNA-templated transcription, termination [Evidence IMP] [PMID 23109428]; GO_process: GO:0070911 - global genome nucleotide-excision repair [Evidence IMP] [PMID 21737840]; GO_process: GO:0016570 - histone modification [Evidence IEA]; GO_process: GO:0031124 - mRNA 3'-end processing [Evidence IMP] [PMID 15149594]; GO_process: GO:0000122 - negative regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 15180994]; GO_process: GO:2001165 - positive regulation of phosphorylation of RNA polymerase II C-terminal domain serine 2 residues [Evidence IMP] [PMID 18469135]; GO_process: GO:2001209 - positive regulation of transcription elongation from RNA polymerase I promoter [Evidence IDA] [PMID 20299458]; GO_process: GO:0032968 - positive regulation of transcription elongation from RNA polymerase II promoter [Evidence IMP] [PMID 14710186]; GO_process: GO:0034402 - recruitment of 3'-end processing factors to RNA polymerase II holoenzyme complex [Evidence IMP] [PMID 18469135]; GO_process: GO:0031938 - regulation of chromatin silencing at telomere [Evidence IMP] [PMID 12667454]; GO_process: GO:0031938 - regulation of chromatin silencing at telomere [Evidence IMP] [PMID 12876293]; GO_process: GO:2001173 - regulation of histone H2B conserved C-terminal lysine ubiquitination [Evidence IMP] [PMID 17576814]; GO_process: GO:2001173 - regulation of histone H2B conserved C-terminal lysine ubiquitination [Evidence IDA] [PMID 19531475]; GO_process: GO:2001166 - regulation of histone H2B ubiquitination [Evidence IMP] [PMID 12876293]; GO_process: GO:2001166 - regulation of histone H2B ubiquitination [Evidence IMP] [PMID 12876294]; GO_process: GO:0051569 - regulation of histone H3-K4 methylation [Evidence IMP] [PMID 12667454]; GO_process: GO:0051569 - regulation of histone H3-K4 methylation [Evidence IMP] [PMID 12876293]; GO_process: GO:0051569 - regulation of histone H3-K4 methylation [Evidence IMP] [PMID 12876294]; GO_process: GO:0051569 - regulation of histone H3-K4 methylation [Evidence IMP] [PMID 15180994]; GO_process: GO:2001160 - regulation of histone H3-K79 methylation [Evidence IMP] [PMID 12876293]; GO_process: GO:2001163 - regulation of phosphorylation of RNA polymerase II C-terminal domain serine 2 residues [Evidence IMP] [PMID 15149594]; GO_process: GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence IGI] [PMID 11884586]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0090262 - regulation of transcription-coupled nucleotide-excision repair [Evidence IGI] [PMID 21737840]; GO_process: GO:0031126 - snoRNA 3'-end processing [Evidence IMP] [PMID 16246725]; GO_process: GO:0001015 - snoRNA transcription from an RNA polymerase II promoter [Evidence IMP] [PMID 16246725]; GO_process: GO:0006368 - transcription elongation from RNA polymerase II promoter [Evidence IGI,IMP] [PMID 11927560]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Rtf1p 5365371 RTF1 30033602 RTF1 Sugiyamaella lignohabitans Rtf1p XP_018735948.1 5363716 D 796027 CDS AWJ20_1765 30033603 5365721..5366320 A 1 NC_031672.1 uncharacterized protein 5366320 30033603 AWJ20_1765 Sugiyamaella lignohabitans uncharacterized protein XP_018735949.1 5365721 D 796027 CDS AWJ20_1766 30033604 5368632..5371262 A 1 NC_031672.1 Acetylglutamate kinase and N-acetyl-gamma-glutamyl-phosphate reductase; N-acetyl-L-glutamate kinase (NAGK) catalyzes the 2nd and N-acetyl-gamma-glutamyl-phosphate reductase (NAGSA), the 3rd step in arginine biosynthesis; synthesized as a precursor which is processed in the mitochondrion to yield mature NAGK and NAGSA; enzymes form a metabolon complex with Arg2p; NAGK C-terminal domain stabilizes the enzymes, slows catalysis and is involved in feed-back inhibition by arginine; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005759 - mitochondrial matrix [Evidence IDA] [PMID 1851947]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0003942 - N-acetyl-gamma-glutamyl-phosphate reductase activity [Evidence IEA,IEA]; GO_function: GO:0003942 - N-acetyl-gamma-glutamyl-phosphate reductase activity [Evidence IDA] [PMID 1851947]; GO_function: GO:0051287 - NAD binding [Evidence IEA]; GO_function: GO:0003991 - acetylglutamate kinase activity [Evidence IEA,IEA]; GO_function: GO:0003991 - acetylglutamate kinase activity [Evidence IDA] [PMID 1851947]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0016620 - oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor [Evidence IEA]; GO_function: GO:0046983 - protein dimerization activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006526 - arginine biosynthetic process [Evidence IEA,IEA,IEA]; GO_process: GO:0006526 - arginine biosynthetic process [Evidence TAS] [PMID 12603335]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0006592 - ornithine biosynthetic process [Evidence TAS] [PMID 1851947]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IMP] [PMID 15486299]; bifunctional acetylglutamate kinase/N-acetyl-gamma-glutamyl-phosphate reductase 5371262 ARG5,6 30033604 ARG5,6 Sugiyamaella lignohabitans bifunctional acetylglutamate kinase/N-acetyl-gamma-glutamyl-phosphate reductase XP_018735950.1 5368632 D 796027 CDS AWJ20_1767 30033605 complement(5374181..5375107) A 1 NC_031672.1 E3 ubiquitin ligase; forms heterodimer with Rad6p to monoubiquitinate PCNA-K164; heterodimer binds single-stranded DNA and has single-stranded DNA dependent ATPase activity; required for postreplication repair; SUMO-targeted ubiquitin ligase (STUbl) that contains a SUMO-interacting motif (SIM) which stimulates its ubiquitin ligase activity towards the sumoylated form of PCNA; GO_component: GO:0097505 - Rad6-Rad18 complex [Evidence IDA] [PMID 9287349]; GO_component: GO:0000790 - nuclear chromatin [Evidence IDA] [PMID 10880451]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 10880451]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0003684 - damaged DNA binding [Evidence IEA]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA,IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0003697 - single-stranded DNA binding [Evidence IDA] [PMID 7926769]; GO_function: GO:0003697 - single-stranded DNA binding [Evidence IDA] [PMID 9287349]; GO_function: GO:0043142 - single-stranded DNA-dependent ATPase activity [Evidence IDA] [PMID 9287349]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0006281 - DNA repair [Evidence IEA,IEA]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0042275 - error-free postreplication DNA repair [Evidence IGI] [PMID 10924462]; GO_process: GO:0042275 - error-free postreplication DNA repair [Evidence IGI] [PMID 9576943]; GO_process: GO:0070987 - error-free translesion synthesis [Evidence IGI] [PMID 9409821]; GO_process: GO:0042276 - error-prone translesion synthesis [Evidence IGI] [PMID 11973297]; GO_process: GO:0042276 - error-prone translesion synthesis [Evidence IGI] [PMID 15687278]; GO_process: GO:0006513 - protein monoubiquitination [Evidence IMP] [PMID 12226657]; GO_process: GO:0016567 - protein ubiquitination [Evidence IEA]; E3 ubiquitin-protein ligase RAD18 5375107 RAD18 30033605 RAD18 Sugiyamaella lignohabitans E3 ubiquitin-protein ligase RAD18 XP_018735951.1 5374181 R 796027 CDS AWJ20_1768 30033606 complement(5375506..5378100) A 1 NC_031672.1 Type II phosphatidylinositol 4-kinase; binds Las17p, a homolog of human Wiskott-Aldrich Syndrome protein involved in actin patch assembly and actin polymerization; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 12361950]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 12523934]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 12361950]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 12523934]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0004430 - 1-phosphatidylinositol 4-kinase activity [Evidence IEA]; GO_function: GO:0004430 - 1-phosphatidylinositol 4-kinase activity [Evidence IDA,IMP] [PMID 12361950]; GO_function: GO:0004430 - 1-phosphatidylinositol 4-kinase activity [Evidence IDA] [PMID 12523934]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016773 - phosphotransferase activity, alcohol group as acceptor [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0046854 - phosphatidylinositol phosphorylation [Evidence IDA,IMP] [PMID 12361950]; GO_process: GO:0046854 - phosphatidylinositol phosphorylation [Evidence IDA] [PMID 12523934]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; 1-phosphatidylinositol 4-kinase LSB6 5378100 LSB6 30033606 LSB6 Sugiyamaella lignohabitans 1-phosphatidylinositol 4-kinase LSB6 XP_018735952.1 5375506 R 796027 CDS AWJ20_1769 30033607 complement(5378609..5380396) A 1 NC_031672.1 Aspartic protease; member of the yapsin family of proteases involved in cell wall growth and maintenance; attached to the plasma membrane via a glycosylphosphatidylinositol (GPI) anchor; YPS1 has a paralog, MKC7, that arose from the whole genome duplication; GO_component: GO:0031225 - anchored component of membrane [Evidence IEA]; GO_component: GO:0009277 - fungal-type cell wall [Evidence IDA] [PMID 10383953]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_function: GO:0004190 - aspartic-type endopeptidase activity [Evidence IEA,IEA]; GO_function: GO:0004190 - aspartic-type endopeptidase activity [Evidence IDA] [PMID 8389368]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_process: GO:0031505 - fungal-type cell wall organization [Evidence IGI] [PMID 16087741]; GO_process: GO:0016485 - protein processing [Evidence IDA] [PMID 8626758]; GO_process: GO:0006508 - proteolysis [Evidence IEA,IEA]; Yps1p 5380396 YPS1 30033607 YPS1 Sugiyamaella lignohabitans Yps1p XP_018735953.1 5378609 R 796027 CDS AWJ20_1770 30033609 complement(5384771..5386348) A 1 NC_031672.1 Putative paralog of ATR1; but not required for boron tolerance; member of the DHA2 family of drug:H+ antiporters; YOR378W is not an essential gene; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Amf1p 5386348 AMF1 30033609 AMF1 Sugiyamaella lignohabitans Amf1p XP_018735954.1 5384771 R 796027 CDS AWJ20_1771 30033610 5387144..5388715 A 1 NC_031672.1 uncharacterized protein 5388715 30033610 AWJ20_1771 Sugiyamaella lignohabitans uncharacterized protein XP_018735955.1 5387144 D 796027 CDS AWJ20_1772 30033611 5390519..5391346 A 1 NC_031672.1 S-AdoMet-dependent methyltransferase involved in lipid homeostasis; mediates resistance to a drug cantharidin; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_function: GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity [Evidence IDA] [PMID 22028670]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 20844764]; GO_function: GO:0008168 - methyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0008168 - methyltransferase activity [Evidence IMP] [PMID 22028670]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0055088 - lipid homeostasis [Evidence IMP] [PMID 22028670]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0032259 - methylation [Evidence IEA]; Crg1p 5391346 CRG1 30033611 CRG1 Sugiyamaella lignohabitans Crg1p XP_018735956.1 5390519 D 796027 CDS AWJ20_1773 30033612 complement(5391493..5392665) A 1 NC_031672.1 Arginase, catabolizes arginine to ornithine and urea; expression responds to both induction by arginine and nitrogen catabolite repression; disruption decreases production of carcinogen ethyl carbamate during wine fermentation and also enhances freeze tolerance; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 205532]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 19053807]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0004053 - arginase activity [Evidence IEA,IEA]; GO_function: GO:0004053 - arginase activity [Evidence IMP] [PMID 14582193]; GO_function: GO:0004053 - arginase activity [Evidence IDA] [PMID 2404017]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016813 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines [Evidence IEA]; GO_function: GO:0030145 - manganese ion binding [Evidence IDA] [PMID 1939179]; GO_function: GO:0046872 - metal ion binding [Evidence IEA,IEA]; GO_function: GO:0090369 - ornithine carbamoyltransferase inhibitor activity [Evidence IDA,IMP] [PMID 12679340]; GO_function: GO:0008270 - zinc ion binding [Evidence IDA] [PMID 1939179]; GO_process: GO:0019547 - arginine catabolic process to ornithine [Evidence IMP] [PMID 14582193]; GO_process: GO:0019547 - arginine catabolic process to ornithine [Evidence IDA] [PMID 2404017]; GO_process: GO:0006525 - arginine metabolic process [Evidence IEA,IEA]; GO_process: GO:0090368 - regulation of ornithine metabolic process [Evidence IDA,IMP] [PMID 12679340]; GO_process: GO:0000050 - urea cycle [Evidence IEA]; arginase 5392665 CAR1 30033612 CAR1 Sugiyamaella lignohabitans arginase XP_018735957.1 5391493 R 796027 CDS AWJ20_1774 30033613 5394977..5397550 A 1 NC_031672.1 Putative sensor/transporter protein involved in cell wall biogenesis; contains 14-16 transmembrane segments and several putative glycosylation and phosphorylation sites; null mutation is synthetically lethal with pkc1 deletion; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 11427965]; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 11427965]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0005887 - integral component of plasma membrane [Evidence IDA] [PMID 11427965]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006506 - GPI anchor biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0006506 - GPI anchor biosynthetic process [Evidence IMP] [PMID 17714445]; GO_process: GO:0006506 - GPI anchor biosynthetic process [Evidence IMP] [PMID 17761529]; GO_process: GO:0031505 - fungal-type cell wall organization [Evidence IGI] [PMID 11427965]; Cwh43p 5397550 CWH43 30033613 CWH43 Sugiyamaella lignohabitans Cwh43p XP_018735958.1 5394977 D 796027 CDS AWJ20_1775 30033614 5398967..5400790 A 1 NC_031672.1 Putative metalloprotease with similarity to zinc carboxypeptidases; required for normal cell wall assembly; GO_component: GO:0000324 - fungal-type vacuole [Evidence IDA] [PMID 14562095]; GO_component: GO:0005773 - vacuole [Evidence IEA,IEA]; GO_function: GO:0004180 - carboxypeptidase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004181 - metallocarboxypeptidase activity [Evidence IEA]; GO_function: GO:0004222 - metalloendopeptidase activity [Evidence ISS] [PMID 15606766]; GO_function: GO:0008237 - metallopeptidase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0006508 - proteolysis [Evidence IEA,IEA]; GO_process: GO:0006508 - proteolysis [Evidence ISS] [PMID 15606766]; Ecm14p 5400790 ECM14 30033614 ECM14 Sugiyamaella lignohabitans Ecm14p XP_018735959.1 5398967 D 796027 CDS AWJ20_1776 30033615 5401368..5402009 A 1 NC_031672.1 uncharacterized protein 5402009 30033615 AWJ20_1776 Sugiyamaella lignohabitans uncharacterized protein XP_018735960.1 5401368 D 796027 CDS AWJ20_1777 30033616 5402305..5403936 A 1 NC_031672.1 uncharacterized protein 5403936 30033616 AWJ20_1777 Sugiyamaella lignohabitans uncharacterized protein XP_018735961.1 5402305 D 796027 CDS AWJ20_1778 30033617 complement(5404077..5406671) A 1 NC_031672.1 N-glycosylated protein; involved in the maintenance of bud site selection during bipolar budding; localization requires Rax1p; RAX2 mRNA stability is regulated by Mpt5p; GO_component: GO:0005935 - cellular bud neck [Evidence IEA]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 11110666]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 15356260]; GO_component: GO:0005621 - cellular bud scar [Evidence IDA] [PMID 11110666]; GO_component: GO:0005934 - cellular bud tip [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence ISS] [PMID 11110666]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0000282 - cellular bud site selection [Evidence IGI,IMP] [PMID 11110666]; Rax2p 5406671 RAX2 30033617 RAX2 Sugiyamaella lignohabitans Rax2p XP_018735962.1 5404077 R 796027 CDS AWJ20_1779 30033618 complement(5406704..5408002) A 1 NC_031672.1 N-glycosylated protein; involved in the maintenance of bud site selection during bipolar budding; localization requires Rax1p; RAX2 mRNA stability is regulated by Mpt5p; GO_component: GO:0005935 - cellular bud neck [Evidence IEA]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 11110666]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 15356260]; GO_component: GO:0005621 - cellular bud scar [Evidence IDA] [PMID 11110666]; GO_component: GO:0005934 - cellular bud tip [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence ISS] [PMID 11110666]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0000282 - cellular bud site selection [Evidence IGI,IMP] [PMID 11110666]; Rax2p 5408002 RAX2 30033618 RAX2 Sugiyamaella lignohabitans Rax2p XP_018735963.1 5406704 R 796027 CDS AWJ20_1780 30033620 complement(5409668..5411938) A 1 NC_031672.1 Cysteinyl-tRNA synthetase; may interact with ribosomes, based on co-purification experiments; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005829 - cytosol [Evidence IBA]; GO_component: GO:0005840 - ribosome [Evidence IDA] [PMID 16702403]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004812 - aminoacyl-tRNA ligase activity [Evidence IEA,IEA]; GO_function: GO:0004817 - cysteine-tRNA ligase activity [Evidence IEA,IEA]; GO_function: GO:0004817 - cysteine-tRNA ligase activity [Evidence IDA] [PMID 9523015]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_process: GO:0006423 - cysteinyl-tRNA aminoacylation [Evidence IEA]; GO_process: GO:0006423 - cysteinyl-tRNA aminoacylation [Evidence IDA] [PMID 9523015]; GO_process: GO:0006418 - tRNA aminoacylation for protein translation [Evidence IEA]; GO_process: GO:0006412 - translation [Evidence IEA]; cysteine--tRNA ligase 5411938 30033620 AWJ20_1780 Sugiyamaella lignohabitans cysteine--tRNA ligase XP_018735964.1 5409668 R 796027 CDS AWJ20_1781 30033621 5413998..5415650 A 1 NC_031672.1 Acid trehalase required for utilization of extracellular trehalose; involved in intracellular trehalose degradation during growth recovery after saline stress; GO_component: GO:0030287 - cell wall-bounded periplasmic space [Evidence IDA] [PMID 15128531]; GO_component: GO:0009277 - fungal-type cell wall [Evidence IDA] [PMID 15128531]; GO_component: GO:0000324 - fungal-type vacuole [Evidence IMP] [PMID 7502577]; GO_component: GO:0005773 - vacuole [Evidence IEA,IEA]; GO_function: GO:0004555 - alpha,alpha-trehalase activity [Evidence IEA]; GO_function: GO:0004555 - alpha,alpha-trehalase activity [Evidence IMP] [PMID 7502577]; GO_function: GO:0030246 - carbohydrate binding [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016798 - hydrolase activity, acting on glycosyl bonds [Evidence IEA]; GO_process: GO:0005975 - carbohydrate metabolic process [Evidence IEA]; GO_process: GO:0071465 - cellular response to desiccation [Evidence IMP] [PMID 8633854]; GO_process: GO:0071361 - cellular response to ethanol [Evidence IMP] [PMID 8633854]; GO_process: GO:0071497 - cellular response to freezing [Evidence IMP] [PMID 8633854]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0005993 - trehalose catabolic process [Evidence IMP] [PMID 7502577]; GO_process: GO:0005993 - trehalose catabolic process [Evidence IDA,IMP,ISS] [PMID 8764988]; alpha,alpha-trehalase ATH1 5415650 ATH1 30033621 ATH1 Sugiyamaella lignohabitans alpha,alpha-trehalase ATH1 XP_018735965.1 5413998 D 796027 CDS AWJ20_1782 30033622 5415897..5417294 A 1 NC_031672.1 Acid trehalase required for utilization of extracellular trehalose; involved in intracellular trehalose degradation during growth recovery after saline stress; GO_component: GO:0030287 - cell wall-bounded periplasmic space [Evidence IDA] [PMID 15128531]; GO_component: GO:0009277 - fungal-type cell wall [Evidence IDA] [PMID 15128531]; GO_component: GO:0000324 - fungal-type vacuole [Evidence IMP] [PMID 7502577]; GO_component: GO:0005773 - vacuole [Evidence IEA,IEA]; GO_function: GO:0004555 - alpha,alpha-trehalase activity [Evidence IEA]; GO_function: GO:0004555 - alpha,alpha-trehalase activity [Evidence IMP] [PMID 7502577]; GO_function: GO:0030246 - carbohydrate binding [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016798 - hydrolase activity, acting on glycosyl bonds [Evidence IEA]; GO_process: GO:0005975 - carbohydrate metabolic process [Evidence IEA]; GO_process: GO:0071465 - cellular response to desiccation [Evidence IMP] [PMID 8633854]; GO_process: GO:0071361 - cellular response to ethanol [Evidence IMP] [PMID 8633854]; GO_process: GO:0071497 - cellular response to freezing [Evidence IMP] [PMID 8633854]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0005993 - trehalose catabolic process [Evidence IMP] [PMID 7502577]; GO_process: GO:0005993 - trehalose catabolic process [Evidence IDA,IMP,ISS] [PMID 8764988]; alpha,alpha-trehalase ATH1 5417294 ATH1 30033622 ATH1 Sugiyamaella lignohabitans alpha,alpha-trehalase ATH1 XP_018735966.1 5415897 D 796027 CDS AWJ20_1783 30033623 complement(5417457..5417975) A 1 NC_031672.1 Heme-binding protein; involved in regulation of cytochrome P450 protein Erg11p; damage response protein, related to mammalian membrane progesterone receptors; mutations lead to defects in telomeres, mitochondria, and sterol synthesis; GO_component: GO:0005768 - endosome [Evidence IDA] [PMID 17954932]; GO_component: GO:0016020 - membrane [Evidence ISS] [PMID 12684380]; GO_function: GO:0020037 - heme binding [Evidence IEA]; GO_function: GO:0020037 - heme binding [Evidence IDA] [PMID 15713626]; GO_process: GO:0032443 - regulation of ergosterol biosynthetic process [Evidence IGI] [PMID 15713626]; GO_process: GO:0032443 - regulation of ergosterol biosynthetic process [Evidence IMP] [PMID 17954932]; Dap1p 5417975 DAP1 30033623 DAP1 Sugiyamaella lignohabitans Dap1p XP_018735967.1 5417457 R 796027 CDS AWJ20_1784 30033624 5418171..5421563 A 1 NC_031672.1 Large subunit of the dynactin complex; dynactin is involved in partitioning the mitotic spindle between mother and daughter cells; putative ortholog of mammalian p150(glued); GO_component: GO:0000235 - astral microtubule [Evidence IDA] [PMID 19403691]; GO_component: GO:0005938 - cell cortex [Evidence IDA] [PMID 19403691]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA,IEA]; GO_component: GO:0005869 - dynactin complex [Evidence IDA] [PMID 9658168]; GO_component: GO:0030286 - dynein complex [Evidence IEA]; GO_component: GO:0005874 - microtubule [Evidence IEA]; GO_component: GO:0000922 - spindle pole [Evidence IEA]; GO_component: GO:0005816 - spindle pole body [Evidence IDA] [PMID 19403691]; GO_component: GO:0005816 - spindle pole body [Evidence IDA] [PMID 9658168]; GO_function: GO:0008017 - microtubule binding [Evidence ISS] [PMID 9658168]; GO_function: GO:0003774 - motor activity [Evidence IEA]; GO_process: GO:0000132 - establishment of mitotic spindle orientation [Evidence IMP] [PMID 9658168]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; Nip100p 5421563 NIP100 30033624 NIP100 Sugiyamaella lignohabitans Nip100p XP_018735968.1 5418171 D 796027 CDS AWJ20_1785 30033625 complement(5421611..5422213) A 1 NC_031672.1 UDP-glycosyltransferase subunit of the GPI-GnT complex; UDP-GlcNAc-binding and catalytic subunit of the enzyme that mediates the first step in glycosylphosphatidylinositol (GPI) biosynthesis, mutations cause defects in transcription and in biogenesis of cell wall proteins; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IMP] [PMID 9079905]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0000506 - glycosylphosphatidylinositol-N- acetylglucosaminyltransferase (GPI-GnT) complex [Evidence TAS] [PMID 11102867]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0008194 - UDP-glycosyltransferase activity [Evidence ISS] [PMID 10970797]; GO_function: GO:0017176 - phosphatidylinositol N-acetylglucosaminyltransferase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA]; GO_process: GO:0006506 - GPI anchor biosynthetic process [Evidence IEA,IEA,IEA]; GO_process: GO:0006506 - GPI anchor biosynthetic process [Evidence ISS] [PMID 8081362]; GO_process: GO:0009058 - biosynthetic process [Evidence IEA]; Spt14p 5422213 SPT14 30033625 SPT14 Sugiyamaella lignohabitans Spt14p XP_018735969.1 5421611 R 796027 CDS AWJ20_1786 30033626 5423686..5426439 A 1 NC_031672.1 Transferrin receptor-like protein; plasma membrane protein that binds Bsd2p and regulates ubiquitylation and vacuolar degradation of the metal transporter Smf1p; functionally redundant with Tre2p; TRE1 has a paralog, TRE2, that arose from the whole genome duplication; GO_component: GO:0000324 - fungal-type vacuole [Evidence IDA] [PMID 16456538]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0043328 - protein targeting to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway [Evidence IGI] [PMID 19369420]; Tre1p 5426439 TRE1 30033626 TRE1 Sugiyamaella lignohabitans Tre1p XP_018735970.1 5423686 D 796027 CDS AWJ20_1787 30033627 complement(5426594..5428144) A 1 NC_031672.1 Component of the RSC chromatin remodeling complex; found in close proximity to nucleosomal DNA; displaced from the surface of nucleosomal DNA after chromatin remodeling; acetylated (K25) by Gcn5p, altering replication stress tolerance; contains tandem bromodomains that recognize histone H3 acetylated on K14 (H3K14ac) by Gcn5p; GO_component: GO:0016586 - RSC complex [Evidence IDA] [PMID 10619019]; GO_component: GO:0016586 - RSC complex [Evidence IDA] [PMID 12183366]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0015616 - DNA translocase activity [Evidence IDA] [PMID 12183366]; GO_function: GO:0015616 - DNA translocase activity [Evidence IDA] [PMID 16455496]; GO_function: GO:0015616 - DNA translocase activity [Evidence IDA] [PMID 17188033]; GO_function: GO:0015616 - DNA translocase activity [Evidence IDA] [PMID 17918861]; GO_function: GO:0070577 - lysine-acetylated histone binding [Evidence IDA] [PMID 20126658]; GO_process: GO:0043044 - ATP-dependent chromatin remodeling [Evidence IDA,IDA] [PMID 12183366]; GO_process: GO:0000086 - G2/M transition of mitotic cell cycle [Evidence IMP] [PMID 17542652]; GO_process: GO:0016568 - chromatin modification [Evidence IEA]; GO_process: GO:0006337 - nucleosome disassembly [Evidence IDA] [PMID 16492771]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006368 - transcription elongation from RNA polymerase II promoter [Evidence IDA] [PMID 17081996]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Rsc4p 5428144 RSC4 30033627 RSC4 Sugiyamaella lignohabitans Rsc4p XP_018735971.1 5426594 R 796027 CDS AWJ20_1789 30033629 5430442..5431716 A 1 NC_031672.1 uncharacterized protein 5431716 30033629 AWJ20_1789 Sugiyamaella lignohabitans uncharacterized protein XP_018735972.1 5430442 D 796027 CDS AWJ20_1790 30033631 5432196..5434256 A 1 NC_031672.1 DNA polymerase eta; involved in translesion synthesis during post-replication repair; catalyzes the synthesis of DNA opposite cyclobutane pyrimidine dimers and other lesions; involved in formation of post-replicative damage-induced genome-wide cohesion; may also have a role in protection against mitochondrial mutagenesis; mutations in human pol eta are responsible for XPV; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 23313845]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 23313845]; GO_component: GO:0005657 - replication fork [Evidence IPI] [PMID 11545742]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA,IEA,IEA]; GO_function: GO:0003887 - DNA-directed DNA polymerase activity [Evidence IDA] [PMID 10601233]; GO_function: GO:0003887 - DNA-directed DNA polymerase activity [Evidence IDA] [PMID 9974380]; GO_function: GO:0003684 - damaged DNA binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016779 - nucleotidyltransferase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006281 - DNA repair [Evidence IEA,IEA]; GO_process: GO:0006260 - DNA replication [Evidence IEA]; GO_process: GO:0006261 - DNA-dependent DNA replication [Evidence IEA,IEA,IEA]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0007059 - chromosome segregation [Evidence IMP] [PMID 23326240]; GO_process: GO:0070987 - error-free translesion synthesis [Evidence IDA] [PMID 10713149]; GO_process: GO:0070987 - error-free translesion synthesis [Evidence IDA] [PMID 10932195]; GO_process: GO:0070987 - error-free translesion synthesis [Evidence IDA] [PMID 11027270]; GO_process: GO:0070987 - error-free translesion synthesis [Evidence IDA] [PMID 9974380]; GO_process: GO:0042276 - error-prone translesion synthesis [Evidence IDA] [PMID 10713149]; GO_process: GO:0042276 - error-prone translesion synthesis [Evidence IMP] [PMID 12110599]; GO_process: GO:0042276 - error-prone translesion synthesis [Evidence IMP] [PMID 16387871]; GO_process: GO:0007064 - mitotic sister chromatid cohesion [Evidence IMP] [PMID 23326240]; Rad30p 5434256 RAD30 30033631 RAD30 Sugiyamaella lignohabitans Rad30p XP_018735973.1 5432196 D 796027 CDS AWJ20_1791 30033632 complement(5434328..5435089) A 1 NC_031672.1 uncharacterized protein 5435089 30033632 AWJ20_1791 Sugiyamaella lignohabitans uncharacterized protein XP_018735974.1 5434328 R 796027 CDS AWJ20_1792 30033633 complement(5435338..5438379) A 1 NC_031672.1 uncharacterized protein 5438379 30033633 AWJ20_1792 Sugiyamaella lignohabitans uncharacterized protein XP_018735975.1 5435338 R 796027 CDS AWJ20_1793 30033634 complement(5440860..5441861) A 1 NC_031672.1 uncharacterized protein 5441861 30033634 AWJ20_1793 Sugiyamaella lignohabitans uncharacterized protein XP_018735976.1 5440860 R 796027 CDS AWJ20_1794 30033635 5442785..5443807 A 1 NC_031672.1 uncharacterized protein 5443807 30033635 AWJ20_1794 Sugiyamaella lignohabitans uncharacterized protein XP_018735977.1 5442785 D 796027 CDS AWJ20_1795 30033636 complement(5443914..5445482) A 1 NC_031672.1 Putative dityrosine transporter of the major facilitator superfamily; member of the 12-spanner drug:H(+) antiporter DHA1 family; required for spore wall synthesis; sequence similarity to QDR1 and QDR3, and the triple mutant dtr1 qdr1 qdr3 exhibits reduced dityrosine fluorescence relative to the single mutants; expressed during sporulation; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005628 - prospore membrane [Evidence IEA]; GO_component: GO:0005628 - prospore membrane [Evidence IDA] [PMID 12455697]; GO_component: GO:0005628 - prospore membrane [Evidence IDA] [PMID 15755916]; GO_function: GO:0005275 - amine transmembrane transporter activity [Evidence IMP] [PMID 12455697]; GO_process: GO:0015837 - amine transport [Evidence IMP] [PMID 12455697]; GO_process: GO:0030476 - ascospore wall assembly [Evidence IMP] [PMID 12455697]; GO_process: GO:0030435 - sporulation resulting in formation of a cellular spore [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IMP] [PMID 12455697]; GO_process: GO:0006810 - transport [Evidence IEA]; Dtr1p 5445482 DTR1 30033636 DTR1 Sugiyamaella lignohabitans Dtr1p XP_018735978.1 5443914 R 796027 CDS AWJ20_1796 30033637 5446313..5447125 A 1 NC_031672.1 Subunit of the 19S regulatory particle of the 26S proteasome lid; synthetically lethal with RPT1, which is an ATPase component of the 19S regulatory particle; physically interacts with Nob1p and Rpn3p; protein abundance increases in response to DNA replication stress; GO_component: GO:0000502 - proteasome complex [Evidence IEA]; GO_component: GO:0005838 - proteasome regulatory particle [Evidence IEA]; GO_component: GO:0008541 - proteasome regulatory particle, lid subcomplex [Evidence IDA] [PMID 9741626]; GO_component: GO:0034515 - proteasome storage granule [Evidence IDA] [PMID 18504300]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006508 - proteolysis [Evidence IEA]; GO_process: GO:0006511 - ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 10490625]; proteasome regulatory particle lid subunit RPN12 5447125 RPN12 30033637 RPN12 Sugiyamaella lignohabitans proteasome regulatory particle lid subunit RPN12 XP_018735979.1 5446313 D 796027 CDS AWJ20_1797 30033638 5449184..5449780 A 1 NC_031672.1 Mitochondrial ribosomal protein of the small subunit; null mutant does not grow on glycerol, is sensitive to 2,4-dichlorophenol, and accumulates large lipid droplets; GO_component: GO:0005763 - mitochondrial small ribosomal subunit [Evidence IPI] [PMID 12392552]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IPI] [PMID 12392552]; GO_process: GO:0032543 - mitochondrial translation [Evidence IC] [PMID 12392552]; mitochondrial 37S ribosomal protein MRPS35 5449780 MRPS35 30033638 MRPS35 Sugiyamaella lignohabitans mitochondrial 37S ribosomal protein MRPS35 XP_018735980.1 5449184 D 796027 CDS AWJ20_1798 30033639 5449926..5450369 A 1 NC_031672.1 Mitochondrial ribosomal protein of the small subunit; null mutant does not grow on glycerol, is sensitive to 2,4-dichlorophenol, and accumulates large lipid droplets; GO_component: GO:0005763 - mitochondrial small ribosomal subunit [Evidence IPI] [PMID 12392552]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IPI] [PMID 12392552]; GO_process: GO:0032543 - mitochondrial translation [Evidence IC] [PMID 12392552]; mitochondrial 37S ribosomal protein MRPS35 5450369 MRPS35 30033639 MRPS35 Sugiyamaella lignohabitans mitochondrial 37S ribosomal protein MRPS35 XP_018735981.1 5449926 D 796027 CDS AWJ20_1799 30033640 complement(5450473..5451579) A 1 NC_031672.1 uncharacterized protein 5451579 30033640 AWJ20_1799 Sugiyamaella lignohabitans uncharacterized protein XP_018735982.1 5450473 R 796027 CDS AWJ20_1800 30033643 join(5452265..5452377,5452816..5457490) A 1 NC_031672.1 Clathrin heavy chain; subunit of the major coat protein involved in intracellular protein transport and endocytosis; the clathrin triskelion is a trimeric molecule composed of three heavy chains that radiate from a vertex and three light chains which bind noncovalently near the vertex of the triskelion; the light chain (CLC1) is thought to regulate function; GO_component: GO:0030132 - clathrin coat of coated pit [Evidence IEA]; GO_component: GO:0030130 - clathrin coat of trans-Golgi network vesicle [Evidence IEA]; GO_component: GO:0030125 - clathrin vesicle coat [Evidence TAS] [PMID 9171338]; GO_component: GO:0005905 - coated pit [Evidence IEA,IEA]; GO_component: GO:0031410 - cytoplasmic vesicle [Evidence IEA]; GO_component: GO:0030659 - cytoplasmic vesicle membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0005198 - structural molecule activity [Evidence IEA]; GO_function: GO:0005198 - structural molecule activity [Evidence TAS] [PMID 9171338]; GO_process: GO:0006897 - endocytosis [Evidence IDA,IMP] [PMID 16643280]; GO_process: GO:0006886 - intracellular protein transport [Evidence IEA]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IEA]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence TAS] [PMID 9171338]; clathrin heavy chain 5457490 CHC1 30033643 CHC1 Sugiyamaella lignohabitans clathrin heavy chain XP_018735983.1 5452265 D 796027 CDS AWJ20_1801 30033644 5458096..5458332 A 1 NC_031672.1 hypothetical protein that associates with ribosomes; has a putative RNA binding domain; interacts with Tma22p; null mutant exhibits translation defects; has homology to human oncogene MCT-1; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 23613772]; GO_component: GO:0005840 - ribosome [Evidence IDA] [PMID 16702403]; GO_function: GO:0003723 - RNA binding [Evidence IEA,IEA]; GO_function: GO:0003723 - RNA binding [Evidence ISS] [PMID 10093218]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IMP] [PMID 16702403]; GO_process: GO:0006412 - translation [Evidence IEA]; Tma20p 5458332 TMA20 30033644 TMA20 Sugiyamaella lignohabitans Tma20p XP_018735984.1 5458096 D 796027 CDS AWJ20_1802 30033645 complement(5458484..5460034) A 1 NC_031672.1 Microtubule effector required for tubulin heterodimer formation; binds alpha-tubulin, required for normal microtubule function, null mutant exhibits cold-sensitive microtubules and sensitivity to benomyl; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA,IEA]; GO_component: GO:0005874 - microtubule [Evidence IEA]; GO_function: GO:0043014 - alpha-tubulin binding [Evidence IPI] [PMID 9885248]; GO_process: GO:0006457 - protein folding [Evidence IGI,ISS] [PMID 9215891]; GO_process: GO:0007021 - tubulin complex assembly [Evidence IGI] [PMID 9215891]; GO_process: GO:0072668 - tubulin complex biogenesis [Evidence IMP] [PMID 9215891]; Pac2p 5460034 PAC2 30033645 PAC2 Sugiyamaella lignohabitans Pac2p XP_018735985.1 5458484 R 796027 CDS AWJ20_1803 30033646 5460360..5461289 A 1 NC_031672.1 Mitochondrial ribosomal protein of the large subunit; GO_component: GO:0005762 - mitochondrial large ribosomal subunit [Evidence IPI] [PMID 12392552]; GO_component: GO:0005762 - mitochondrial large ribosomal subunit [Evidence IDA] [PMID 9151978]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IPI] [PMID 12392552]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IDA] [PMID 9151978]; GO_process: GO:0032543 - mitochondrial translation [Evidence IC] [PMID 12392552]; GO_process: GO:0032543 - mitochondrial translation [Evidence IC] [PMID 9151978]; mitochondrial 54S ribosomal protein YmL17/YmL30 5461289 MRPL17 30033646 MRPL17 Sugiyamaella lignohabitans mitochondrial 54S ribosomal protein YmL17/YmL30 XP_018735986.1 5460360 D 796027 CDS AWJ20_1804 30033647 complement(5461433..5462461) A 1 NC_031672.1 uncharacterized protein 5462461 30033647 AWJ20_1804 Sugiyamaella lignohabitans uncharacterized protein XP_018735987.1 5461433 R 796027 CDS AWJ20_1805 30033648 complement(5462632..5464524) A 1 NC_031672.1 Nrd1 complex RNA-binding subunit 5464524 NRD1 30033648 NRD1 Sugiyamaella lignohabitans Nrd1 complex RNA-binding subunit XP_018735988.1 5462632 R 796027 CDS AWJ20_1806 30033649 complement(5466800..5468272) A 1 NC_031672.1 U2-snRNP associated splicing factor 5468272 30033649 AWJ20_1806 Sugiyamaella lignohabitans U2-snRNP associated splicing factor XP_018735989.1 5466800 R 796027 CDS AWJ20_1807 30033650 complement(5469094..5469417) A 1 NC_031672.1 RnaseH domain, transposon factor 5469417 30033650 AWJ20_1807 Sugiyamaella lignohabitans RnaseH domain, transposon factor XP_018735990.1 5469094 R 796027 CDS AWJ20_1809 30033652 complement(5471273..5472238) A 1 NC_031672.1 Putative 1,3-beta-glucanosyltransferase; has similarity go other GAS family members; low abundance, possibly inactive member of the GAS family of GPI-containing proteins; localizes to the cell wall; mRNA induced during sporulation; GO_component: GO:0031225 - anchored component of membrane [Evidence IEA]; GO_component: GO:0005618 - cell wall [Evidence IEA,IEA]; GO_component: GO:0005576 - extracellular region [Evidence IEA]; GO_component: GO:0009277 - fungal-type cell wall [Evidence IDA] [PMID 10383953]; GO_component: GO:0009277 - fungal-type cell wall [Evidence IDA] [PMID 15781460]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 16622836]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 17507646]; GO_function: GO:0042124 - 1,3-beta-glucanosyltransferase activity [Evidence ISS] [PMID 10769178]; GO_function: GO:0042124 - 1,3-beta-glucanosyltransferase activity [Evidence IDA] [PMID 17397106]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0005975 - carbohydrate metabolic process [Evidence IEA]; Gas3p 5472238 GAS3 30033652 GAS3 Sugiyamaella lignohabitans Gas3p XP_018735991.1 5471273 R 796027 CDS AWJ20_1810 30033654 complement(5474655..5475170) A 1 NC_031672.1 uncharacterized protein 5475170 30033654 AWJ20_1810 Sugiyamaella lignohabitans uncharacterized protein XP_018735992.1 5474655 R 796027 CDS AWJ20_1811 30033655 complement(5476823..5480344) A 1 NC_031672.1 Histidine kinase osmosensor that regulates a MAP kinase cascade; transmembrane protein with an intracellular kinase domain that signals to Ypd1p and Ssk1p, thereby forming a phosphorelay system similar to bacterial two-component regulators; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0005887 - integral component of plasma membrane [Evidence IDA] [PMID 10198019]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 14665464]; GO_component: GO:0005886 - plasma membrane [Evidence ISS] [PMID 8808622]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0009927 - histidine phosphotransfer kinase activity [Evidence IDA,IMP] [PMID 12455952]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0005034 - osmosensor activity [Evidence IDA] [PMID 12821642]; GO_function: GO:0000156 - phosphorelay response regulator activity [Evidence IEA]; GO_function: GO:0000155 - phosphorelay sensor kinase activity [Evidence IEA]; GO_function: GO:0004673 - protein histidine kinase activity [Evidence IEA]; GO_function: GO:0004673 - protein histidine kinase activity [Evidence IDA] [PMID 8808622]; GO_function: GO:0004871 - signal transducer activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016772 - transferase activity, transferring phosphorus-containing groups [Evidence IEA]; GO_process: GO:0035556 - intracellular signal transduction [Evidence IEA]; GO_process: GO:0006469 - negative regulation of protein kinase activity [Evidence IGI,IMP] [PMID 9482735]; GO_process: GO:0007234 - osmosensory signaling via phosphorelay pathway [Evidence IDA] [PMID 8808622]; GO_process: GO:0018106 - peptidyl-histidine phosphorylation [Evidence IDA] [PMID 8808622]; GO_process: GO:0000160 - phosphorelay signal transduction system [Evidence IEA,IEA]; GO_process: GO:0016310 - phosphorylation [Evidence IEA,IEA]; GO_process: GO:0046777 - protein autophosphorylation [Evidence IDA] [PMID 8808622]; GO_process: GO:0007165 - signal transduction [Evidence IEA]; GO_process: GO:0023014 - signal transduction by phosphorylation [Evidence IEA]; Sln1p 5480344 SLN1 30033655 SLN1 Sugiyamaella lignohabitans Sln1p XP_018735993.1 5476823 R 796027 CDS AWJ20_1812 30033656 5483734..5485176 A 1 NC_031672.1 UDP-N-acetylglucosamine pyrophosphorylase; catalyzes the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), which is important in cell wall biosynthesis, protein N-glycosylation, and GPI anchor biosynthesis; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003977 - UDP-N-acetylglucosamine diphosphorylase activity [Evidence IEA]; GO_function: GO:0003977 - UDP-N-acetylglucosamine diphosphorylase activity [Evidence IDA] [PMID 9603950]; GO_function: GO:0016779 - nucleotidyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006048 - UDP-N-acetylglucosamine biosynthetic process [Evidence IEA]; GO_process: GO:0006048 - UDP-N-acetylglucosamine biosynthetic process [Evidence IDA] [PMID 9603950]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; UDP-N-acetylglucosamine diphosphorylase 5485176 QRI1 30033656 QRI1 Sugiyamaella lignohabitans UDP-N-acetylglucosamine diphosphorylase XP_018735994.1 5483734 D 796027 CDS AWJ20_1813 30033657 complement(5488517..5490622) A 1 NC_031672.1 uncharacterized protein 5490622 30033657 AWJ20_1813 Sugiyamaella lignohabitans uncharacterized protein XP_018735995.1 5488517 R 796027 CDS AWJ20_1814 30033658 complement(5491531..5494095) A 1 NC_031672.1 uncharacterized protein 5494095 30033658 AWJ20_1814 Sugiyamaella lignohabitans uncharacterized protein XP_018735996.1 5491531 R 796027 CDS AWJ20_1815 30033659 complement(5494325..5494687) A 1 NC_031672.1 uncharacterized protein 5494687 30033659 AWJ20_1815 Sugiyamaella lignohabitans uncharacterized protein XP_018735997.1 5494325 R 796027 CDS AWJ20_1816 30033660 5498221..5500611 A 1 NC_031672.1 uncharacterized protein 5500611 30033660 AWJ20_1816 Sugiyamaella lignohabitans uncharacterized protein XP_018735998.1 5498221 D 796027 CDS AWJ20_1817 30033661 join(5501709..5501747,5501816..5502457) A 1 NC_031672.1 uncharacterized protein 5502457 30033661 AWJ20_1817 Sugiyamaella lignohabitans uncharacterized protein XP_018735999.1 5501709 D 796027 CDS AWJ20_1818 30033662 complement(5504112..5505935) A 1 NC_031672.1 MRX complex nuclease subunit 5505935 MRE11 30033662 MRE11 Sugiyamaella lignohabitans MRX complex nuclease subunit XP_018736000.1 5504112 R 796027 CDS AWJ20_1819 30033663 5510274..5510669 A 1 NC_031672.1 Ribosomal 60S subunit protein L23B; homologous to mammalian ribosomal protein L23 and bacterial L14; RPL23B has a paralog, RPL23A, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 22932476]; GO_component: GO:0022625 - cytosolic large ribosomal subunit [Evidence IDA] [PMID 11983894]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22932476]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA,IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IC] [PMID 11983894]; GO_process: GO:0002181 - cytoplasmic translation [Evidence IC] [PMID 11983894]; GO_process: GO:0006412 - translation [Evidence IEA]; ribosomal 60S subunit protein L23B 5510669 RPL23B 30033663 RPL23B Sugiyamaella lignohabitans ribosomal 60S subunit protein L23B XP_018736001.1 5510274 D 796027 CDS AWJ20_1821 30033666 5511416..5511730 A 1 NC_031672.1 uncharacterized protein 5511730 30033666 AWJ20_1821 Sugiyamaella lignohabitans uncharacterized protein XP_018736002.1 5511416 D 796027 CDS AWJ20_1822 30033667 5514898..5521554 A 1 NC_031672.1 DNA-binding protein kinase TEL1 5521554 TEL1 30033667 TEL1 Sugiyamaella lignohabitans DNA-binding protein kinase TEL1 XP_018736003.1 5514898 D 796027 CDS AWJ20_1823 30033668 5521632..5521841 A 1 NC_031672.1 uncharacterized protein 5521841 30033668 AWJ20_1823 Sugiyamaella lignohabitans uncharacterized protein XP_018736004.1 5521632 D 796027 CDS AWJ20_1824 30033669 complement(5521990..5522778) A 1 NC_031672.1 Mitochondrial ribosomal protein of the small subunit; GO_component: GO:0005763 - mitochondrial small ribosomal subunit [Evidence IEA]; GO_component: GO:0005763 - mitochondrial small ribosomal subunit [Evidence IPI] [PMID 11278769]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA,IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IPI] [PMID 11278769]; GO_process: GO:0032543 - mitochondrial translation [Evidence IC] [PMID 11278769]; GO_process: GO:0006412 - translation [Evidence IEA]; mitochondrial 37S ribosomal protein RSM25 5522778 RSM25 30033669 RSM25 Sugiyamaella lignohabitans mitochondrial 37S ribosomal protein RSM25 XP_018736005.1 5521990 R 796027 CDS AWJ20_1825 30033670 5524609..5525562 A 1 NC_031672.1 E1 beta subunit of the pyruvate dehydrogenase (PDH) complex; PDH is an evolutionarily conserved multi-protein complex found in mitochondria; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA]; GO_component: GO:0042645 - mitochondrial nucleoid [Evidence IDA] [PMID 15692048]; GO_component: GO:0005967 - mitochondrial pyruvate dehydrogenase complex [Evidence IDA] [PMID 2007123]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IMP] [PMID 8433986]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0004739 - pyruvate dehydrogenase (acetyl-transferring) activity [Evidence IEA]; GO_function: GO:0004739 - pyruvate dehydrogenase (acetyl-transferring) activity [Evidence IMP] [PMID 8433986]; GO_process: GO:0006086 - acetyl-CoA biosynthetic process from pyruvate [Evidence IDA] [PMID 7947791]; GO_process: GO:0006096 - glycolytic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; pyruvate dehydrogenase (acetyl-transferring) subunit E1 beta 5525562 PDB1 30033670 PDB1 Sugiyamaella lignohabitans pyruvate dehydrogenase (acetyl-transferring) subunit E1 beta XP_018736006.1 5524609 D 796027 CDS AWJ20_1826 30033671 complement(5525803..5527428) A 1 NC_031672.1 uncharacterized protein 5527428 30033671 AWJ20_1826 Sugiyamaella lignohabitans uncharacterized protein XP_018736007.1 5525803 R 796027 CDS AWJ20_1827 30033672 5528600..5530072 A 1 NC_031672.1 Proline oxidase; nuclear-encoded mitochondrial protein involved in utilization of proline as sole nitrogen source; PUT1 transcription is induced by Put3p in the presence of proline and the absence of a preferred nitrogen source; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 3125423]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0004657 - proline dehydrogenase activity [Evidence IEA]; GO_function: GO:0004657 - proline dehydrogenase activity [Evidence IDA] [PMID 20450881]; GO_function: GO:0004657 - proline dehydrogenase activity [Evidence IMP] [PMID 387737]; GO_process: GO:0006537 - glutamate biosynthetic process [Evidence IEA]; GO_process: GO:0006537 - glutamate biosynthetic process [Evidence IC] [PMID 387737]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0006562 - proline catabolic process [Evidence IEA]; GO_process: GO:0010133 - proline catabolic process to glutamate [Evidence IEA]; GO_process: GO:0010133 - proline catabolic process to glutamate [Evidence IDA] [PMID 20450881]; GO_process: GO:0010133 - proline catabolic process to glutamate [Evidence IMP] [PMID 387737]; GO_process: GO:0006560 - proline metabolic process [Evidence IEA]; proline dehydrogenase 5530072 PUT1 30033672 PUT1 Sugiyamaella lignohabitans proline dehydrogenase XP_018736008.1 5528600 D 796027 CDS AWJ20_1828 30033673 join(5531587..5532021,5532128..5536441) A 1 NC_031672.1 Cortical ER protein involved in ER-plasma membrane tethering; one of 6 proteins (Ist2p, Scs2p, Scs22p, Tcb1p, Tcb2p, Tcb3p) that connect ER to the plasma membrane (PM) and regulate PM phosphatidylinositol-4-phosphate (PI4P) levels by controlling access of Sac1p phosphatase to its substrate PI4P in the PM; localized to the bud via specific mRNA transport; non-tagged protein detected in a phosphorylated state in mitochondria; C-termini of Tcb1p, Tcb2p and Tcb3p interact; GO_component: GO:0005933 - cellular bud [Evidence IDA] [PMID 13679573]; GO_component: GO:0032541 - cortical endoplasmic reticulum [Evidence IDA] [PMID 22250200]; GO_component: GO:0032541 - cortical endoplasmic reticulum [Evidence IDA] [PMID 23237950]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 23237950]; GO_function: GO:0005544 - calcium-dependent phospholipid binding [Evidence IEA]; GO_function: GO:0008289 - lipid binding [Evidence IEA]; GO_function: GO:0008289 - lipid binding [Evidence IDA] [PMID 15049706]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_process: GO:0090158 - endoplasmic reticulum membrane organization [Evidence IGI] [PMID 23237950]; GO_process: GO:0060304 - regulation of phosphatidylinositol dephosphorylation [Evidence IGI] [PMID 23237950]; Tcb3p 5536441 TCB3 30033673 TCB3 Sugiyamaella lignohabitans Tcb3p XP_018736009.1 5531587 D 796027 CDS AWJ20_1829 30033674 complement(5536683..5538131) A 1 NC_031672.1 t-SNARE protein required for secretory vesicle-plasma membrane fusion; similar to but not functionally redundant with Spo20p; interacts non-exocyst bound Sec6p; SNAP-25 homolog; GO_component: GO:0031201 - SNARE complex [Evidence IDA] [PMID 9195974]; GO_component: GO:0019897 - extrinsic component of plasma membrane [Evidence IDA] [PMID 7954793]; GO_function: GO:0005484 - SNAP receptor activity [Evidence IDA] [PMID 16339720]; GO_function: GO:0005484 - SNAP receptor activity [Evidence ISS] [PMID 7954793]; GO_process: GO:0006893 - Golgi to plasma membrane transport [Evidence TAS] [PMID 10047442]; GO_process: GO:0006887 - exocytosis [Evidence IGI] [PMID 12913108]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0006906 - vesicle fusion [Evidence IDA] [PMID 11001046]; Sec9p 5538131 SEC9 30033674 SEC9 Sugiyamaella lignohabitans Sec9p XP_018736010.1 5536683 R 796027 CDS AWJ20_1830 30033676 5538338..5540293 A 1 NC_031672.1 Diphthamide synthetase; catalyzes the last amidation step of diphthamide biosynthesis using ammonium and ATP; evolutionarily conserved in eukaryotes; dph6 mutants exhibit diphthine accumulation and resistance to sordarin, which is indicative of defects in diphthamide formation on EF2; green fluorescent protein (GFP)-tagged protein localizes to the cytoplasm; DPH6/YLR143W is not an essential gene; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0017178 - diphthine-ammonia ligase activity [Evidence IEA]; GO_function: GO:0017178 - diphthine-ammonia ligase activity [Evidence IDA,IMP] [PMID 23169644]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0017183 - peptidyl-diphthamide biosynthetic process from peptidyl-histidine [Evidence IEA]; GO_process: GO:0017183 - peptidyl-diphthamide biosynthetic process from peptidyl-histidine [Evidence IDA,IMP] [PMID 23169644]; GO_process: GO:0017183 - peptidyl-diphthamide biosynthetic process from peptidyl-histidine [Evidence IMP] [PMID 23468660]; Dph6p 5540293 DPH6 30033676 DPH6 Sugiyamaella lignohabitans Dph6p XP_018736011.1 5538338 D 796027 CDS AWJ20_1831 30033677 5540961..5541173 A 1 NC_031672.1 Lumazine synthase (DMRL synthase); catalyzes synthesis of immediate precursor to riboflavin; DMRL synthase stands for 6,7-dimethyl-8-ribityllumazine synthase; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IEA]; GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IDA] [PMID 22984289]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0009349 - riboflavin synthase complex [Evidence IEA]; GO_function: GO:0000906 - 6,7-dimethyl-8-ribityllumazine synthase activity [Evidence IGI,ISS] [PMID 7559556]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0009231 - riboflavin biosynthetic process [Evidence IEA,IEA,IEA]; GO_process: GO:0009231 - riboflavin biosynthetic process [Evidence IMP] [PMID 5366000]; GO_process: GO:0009231 - riboflavin biosynthetic process [Evidence IMP] [PMID 7559556]; lumazine synthase RIB4 5541173 RIB4 30033677 RIB4 Sugiyamaella lignohabitans lumazine synthase RIB4 XP_018736012.1 5540961 D 796027 CDS AWJ20_1832 30033678 complement(5541368..5542810) A 1 NC_031672.1 Nucleolar protein required for 60S ribosomal subunit biogenesis; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 9891085]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0000463 - maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 9891085]; GO_process: GO:0042273 - ribosomal large subunit biogenesis [Evidence IMP] [PMID 9891085]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; Nop8p 5542810 NOP8 30033678 NOP8 Sugiyamaella lignohabitans Nop8p XP_018736013.1 5541368 R 796027 CDS AWJ20_1833 30033679 5543052..5546324 A 1 NC_031672.1 Component of the Paf1p complex involved in transcription elongation; binds to and modulates the activity of RNA polymerases I and II; required for expression of a subset of genes, including cyclin genes; involved in SER3 repression by helping to maintain SRG1 transcription-dependent nucleosome occupancy; contains TPR repeats; GO_component: GO:0016593 - Cdc73/Paf1 complex [Evidence IPI] [PMID 10219085]; GO_component: GO:0016593 - Cdc73/Paf1 complex [Evidence IPI] [PMID 11884586]; GO_component: GO:0016593 - Cdc73/Paf1 complex [Evidence IPI] [PMID 11927560]; GO_component: GO:0005654 - nucleoplasm [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 10219085]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 10684247]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 15643076]; GO_component: GO:0035327 - transcriptionally active chromatin [Evidence IDA] [PMID 15531585]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:1990269 - RNA polymerase II C-terminal domain phosphoserine binding [Evidence IDA] [PMID 22796944]; GO_function: GO:0000993 - RNA polymerase II core binding [Evidence IPI] [PMID 11884586]; GO_function: GO:0001076 - RNA polymerase II transcription factor binding transcription factor activity [Evidence IPI] [PMID 11927560]; GO_function: GO:0045142 - triplex DNA binding [Evidence IDA] [PMID 11058104]; GO_process: GO:0006353 - DNA-templated transcription, termination [Evidence IMP] [PMID 23109428]; GO_process: GO:0031124 - mRNA 3'-end processing [Evidence IMP] [PMID 15149594]; GO_process: GO:2001255 - positive regulation of histone H3-K36 trimethylation [Evidence IMP] [PMID 17948059]; GO_process: GO:2001165 - positive regulation of phosphorylation of RNA polymerase II C-terminal domain serine 2 residues [Evidence IMP] [PMID 18469135]; GO_process: GO:2001209 - positive regulation of transcription elongation from RNA polymerase I promoter [Evidence IDA] [PMID 20299458]; GO_process: GO:0031938 - regulation of chromatin silencing at telomere [Evidence IMP] [PMID 18194564]; GO_process: GO:2001173 - regulation of histone H2B conserved C-terminal lysine ubiquitination [Evidence IDA] [PMID 19531475]; GO_process: GO:0051569 - regulation of histone H3-K4 methylation [Evidence IMP] [PMID 12667454]; GO_process: GO:0034401 - regulation of transcription by chromatin organization [Evidence IMP] [PMID 18194564]; GO_process: GO:0060260 - regulation of transcription initiation from RNA polymerase II promoter [Evidence IMP] [PMID 18194564]; GO_process: GO:0000083 - regulation of transcription involved in G1/S transition of mitotic cell cycle [Evidence IMP] [PMID 10219085]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0090262 - regulation of transcription-coupled nucleotide-excision repair [Evidence IGI] [PMID 21737840]; GO_process: GO:0031126 - snoRNA 3'-end processing [Evidence IMP] [PMID 16246725]; GO_process: GO:0001015 - snoRNA transcription from an RNA polymerase II promoter [Evidence IMP] [PMID 16246725]; GO_process: GO:0006362 - transcription elongation from RNA polymerase I promoter [Evidence IMP] [PMID 19164765]; GO_process: GO:0006368 - transcription elongation from RNA polymerase II promoter [Evidence IGI] [PMID 11927560]; GO_process: GO:0006360 - transcription from RNA polymerase I promoter [Evidence IGI] [PMID 20299458]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Ctr9p 5546324 CTR9 30033679 CTR9 Sugiyamaella lignohabitans Ctr9p XP_018736014.1 5543052 D 796027 CDS AWJ20_1834 30033680 5548090..5549154 A 1 NC_031672.1 uncharacterized protein 5549154 30033680 AWJ20_1834 Sugiyamaella lignohabitans uncharacterized protein XP_018736015.1 5548090 D 796027 CDS AWJ20_1835 30033681 complement(5549318..5549941) A 1 NC_031672.1 uncharacterized protein 5549941 30033681 AWJ20_1835 Sugiyamaella lignohabitans uncharacterized protein XP_018736016.1 5549318 R 796027 CDS AWJ20_1836 30033682 complement(5550144..5552963) A 1 NC_031672.1 Homodimeric Zn2Cys6 zinc finger transcription factor; binds to a weak acid response element to induce transcription of PDR12 and FUN34, encoding an acid transporter and a putative ammonia transporter, respectively; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 12588995]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0000981 - sequence-specific DNA binding RNA polymerase II transcription factor activity [Evidence IEA]; GO_function: GO:0003700 - sequence-specific DNA binding transcription factor activity [Evidence IMP,ISS] [PMID 12588995]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence IEA]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA,IEA]; GO_process: GO:0001101 - response to acid [Evidence IMP] [PMID 12588995]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; War1p 5552963 WAR1 30033682 WAR1 Sugiyamaella lignohabitans War1p XP_018736017.1 5550144 R 796027 CDS AWJ20_1837 30033683 complement(5553874..5556933) A 1 NC_031672.1 HMG-CoA reductase; catalyzes the conversion of HMG-CoA to mevalonate, which is a rate-limiting step in sterol biosynthesis; one of two isozymes; localizes to the nuclear envelope; overproduction induces the formation of karmellae; forms foci at the nuclear periphery upon DNA replication stress; HMG1 has a paralog, HMG2, that arose from the whole genome duplication; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IDA] [PMID 8744950]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 3065625]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005635 - nuclear envelope [Evidence IEA]; GO_component: GO:0005635 - nuclear envelope [Evidence IDA] [PMID 8744950]; GO_component: GO:0034399 - nuclear periphery [Evidence IDA] [PMID 22842922]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_function: GO:0050661 - NADP binding [Evidence IEA]; GO_function: GO:0050662 - coenzyme binding [Evidence IEA]; GO_function: GO:0004420 - hydroxymethylglutaryl-CoA reductase (NADPH) activity [Evidence IEA,IEA]; GO_function: GO:0004420 - hydroxymethylglutaryl-CoA reductase (NADPH) activity [Evidence IMP] [PMID 2828155]; GO_function: GO:0004420 - hydroxymethylglutaryl-CoA reductase (NADPH) activity [Evidence IDA] [PMID 3526336]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor [Evidence IEA]; GO_process: GO:0015936 - coenzyme A metabolic process [Evidence IEA]; GO_process: GO:0006696 - ergosterol biosynthetic process [Evidence IMP] [PMID 9292983]; GO_process: GO:0019287 - isopentenyl diphosphate biosynthetic process, mevalonate pathway [Evidence IC] [PMID 3526336]; GO_process: GO:0008299 - isoprenoid biosynthetic process [Evidence IEA]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0006694 - steroid biosynthetic process [Evidence IEA]; GO_process: GO:0008202 - steroid metabolic process [Evidence IEA]; GO_process: GO:0016126 - sterol biosynthetic process [Evidence IEA]; hydroxymethylglutaryl-CoA reductase (NADPH) HMG1 5556933 HMG1 30033683 HMG1 Sugiyamaella lignohabitans hydroxymethylglutaryl-CoA reductase (NADPH) HMG1 XP_018736018.1 5553874 R 796027 CDS AWJ20_1838 30033684 complement(5558302..5559639) A 1 NC_031672.1 Catalytic subunit of a tRNA methyltransferase complex; Trm8p and Trm82p comprise an enzyme that catalyzes a methyl-transfer from S-adenosyl-l-methionine to the N(7) atom of guanine at position 46 in tRNA; Trm8 lacks catalytic activity if not bound to Trm82p; relocalizes to the cytosol in response to hypoxia; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 22932476]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22932476]; GO_component: GO:0043527 - tRNA methyltransferase complex [Evidence IDA] [PMID 12403464]; GO_function: GO:0008176 - tRNA (guanine-N7-)-methyltransferase activity [Evidence IMP] [PMID 12403464]; GO_function: GO:0008176 - tRNA (guanine-N7-)-methyltransferase activity [Evidence IDA] [PMID 17382321]; GO_process: GO:0036265 - RNA (guanine-N7)-methylation [Evidence IEA]; GO_process: GO:0030488 - tRNA methylation [Evidence IEA]; GO_process: GO:0030488 - tRNA methylation [Evidence IMP] [PMID 12403464]; GO_process: GO:0030488 - tRNA methylation [Evidence IDA] [PMID 17382321]; GO_process: GO:0008033 - tRNA processing [Evidence IEA]; Trm82p 5559639 TRM82 30033684 TRM82 Sugiyamaella lignohabitans Trm82p XP_018736019.1 5558302 R 796027 CDS AWJ20_1839 30033685 5563030..5563947 A 1 NC_031672.1 Involved in nuclear migration, part of the dynein/dynactin pathway; targets dynein to microtubule tips, which is necessary for sliding of microtubules along bud cortex; serves at interface between dynein's ATPase site and its microtubule binding stalk, causing individual dynein motors to remain attached to microtubules for long periods; synthetic lethal with bni1; homolog of human LIS1, mutations in which cause the severe brain disorder lissencephaly; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005881 - cytoplasmic microtubule [Evidence IDA] [PMID 12566428]; GO_component: GO:0005881 - cytoplasmic microtubule [Evidence IDA] [PMID 15965467]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA,IEA]; GO_component: GO:0005874 - microtubule [Evidence IEA]; GO_component: GO:0005875 - microtubule associated complex [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 15965467]; GO_component: GO:0000922 - spindle pole [Evidence IEA]; GO_function: GO:0045502 - dynein binding [Evidence IEA]; GO_function: GO:0051010 - microtubule plus-end binding [Evidence IDA] [PMID 15965467]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0006928 - cellular component movement [Evidence IEA]; GO_process: GO:0000132 - establishment of mitotic spindle orientation [Evidence IEA]; GO_process: GO:0007017 - microtubule-based process [Evidence IEA]; GO_process: GO:0007067 - mitotic nuclear division [Evidence IEA]; GO_process: GO:0030473 - nuclear migration along microtubule [Evidence IMP] [PMID 12566428]; GO_process: GO:2000582 - positive regulation of plus-end-directed microtubule motor activity [Evidence IMP] [PMID 22939623]; GO_process: GO:0006810 - transport [Evidence IEA]; Pac1p 5563947 PAC1 30033685 PAC1 Sugiyamaella lignohabitans Pac1p XP_018736020.1 5563030 D 796027 CDS AWJ20_1840 30033687 complement(5564150..5566471) A 1 NC_031672.1 Protein required for normal mitochondrial morphology; has similarity to hemolysins; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 14562095]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0030554 - adenyl nucleotide binding [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0030026 - cellular manganese ion homeostasis [Evidence IMP] [PMID 15498024]; GO_process: GO:0007005 - mitochondrion organization [Evidence IMP] [PMID 10628851]; Mam3p 5566471 MAM3 30033687 MAM3 Sugiyamaella lignohabitans Mam3p XP_018736021.1 5564150 R 796027 CDS AWJ20_1841 30033688 complement(join(5568216..5568220,5568328..5569471)) A 1 NC_031672.1 Alcohol dehydrogenase isoenzyme type IV; dimeric enzyme demonstrated to be zinc-dependent despite sequence similarity to iron-activated alcohol dehydrogenases; transcription is induced in response to zinc deficiency; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 17054397]; GO_function: GO:0004022 - alcohol dehydrogenase (NAD) activity [Evidence IEA]; GO_function: GO:0004022 - alcohol dehydrogenase (NAD) activity [Evidence IMP] [PMID 3023838]; GO_function: GO:0004022 - alcohol dehydrogenase (NAD) activity [Evidence IDA] [PMID 3282541]; GO_function: GO:0046872 - metal ion binding [Evidence IEA,IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_process: GO:0000947 - amino acid catabolic process to alcohol via Ehrlich pathway [Evidence IGI] [PMID 12499363]; GO_process: GO:0006113 - fermentation [Evidence IMP] [PMID 3023838]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; alcohol dehydrogenase ADH4 5569471 ADH4 30033688 ADH4 Sugiyamaella lignohabitans alcohol dehydrogenase ADH4 XP_018736022.1 5568216 R 796027 CDS AWJ20_1842 30033689 complement(5569789..5571228) A 1 NC_031672.1 Uncharacterized protein RA0937 5571228 30033689 AWJ20_1842 Sugiyamaella lignohabitans Uncharacterized protein RA0937 XP_018736023.1 5569789 R 796027 CDS AWJ20_1843 30033690 complement(5572297..5573982) A 1 NC_031672.1 DNA-binding transcription factor YAP1 5573982 YAP1 30033690 YAP1 Sugiyamaella lignohabitans DNA-binding transcription factor YAP1 XP_018736024.1 5572297 R 796027 CDS AWJ20_1844 30033691 join(5578242..5580642,5580700..5582924) A 1 NC_031672.1 Glycogen debranching enzyme; contains glucanotranferase and alpha-1,6-amyloglucosidase activities; required for glycogen degradation; phosphorylated in mitochondria; activity is inhibited by Igd1p; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005634 - nucleus [Evidence IBA]; GO_function: GO:0004134 - 4-alpha-glucanotransferase activity [Evidence IEA,IEA]; GO_function: GO:0004134 - 4-alpha-glucanotransferase activity [Evidence IDA,IMP] [PMID 11094287]; GO_function: GO:0004135 - amylo-alpha-1,6-glucosidase activity [Evidence IEA,IEA]; GO_function: GO:0004135 - amylo-alpha-1,6-glucosidase activity [Evidence IDA,IMP] [PMID 11094287]; GO_function: GO:0003824 - catalytic activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016798 - hydrolase activity, acting on glycosyl bonds [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA]; GO_process: GO:0005975 - carbohydrate metabolic process [Evidence IEA]; GO_process: GO:0005978 - glycogen biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0005980 - glycogen catabolic process [Evidence IEA]; GO_process: GO:0005980 - glycogen catabolic process [Evidence IMP] [PMID 11094287]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; bifunctional 4-alpha-glucanotransferase/amylo-alpha-1,6-glucosidase 5582924 GDB1 30033691 GDB1 Sugiyamaella lignohabitans bifunctional 4-alpha-glucanotransferase/amylo-alpha-1,6-glucosidase XP_018736025.1 5578242 D 796027 CDS AWJ20_1845 30033692 5583353..5583709 A 1 NC_031672.1 myosin II regulatory light chain Rlc1 5583709 rlc1 30033692 rlc1 Sugiyamaella lignohabitans myosin II regulatory light chain Rlc1 XP_018736026.1 5583353 D 796027 CDS AWJ20_1846 30033693 complement(join(5583929..5584385,5584506..5584525)) A 1 NC_031672.1 RNA polymerase subunit ABC23; common to RNA polymerases I, II, and III; part of central core; similar to bacterial omega subunit; GO_component: GO:0005736 - DNA-directed RNA polymerase I complex [Evidence IDA] [PMID 11486042]; GO_component: GO:0005736 - DNA-directed RNA polymerase I complex [Evidence IDA] [PMID 9837969]; GO_component: GO:0005665 - DNA-directed RNA polymerase II, core complex [Evidence IEA]; GO_component: GO:0005665 - DNA-directed RNA polymerase II, core complex [Evidence IDA] [PMID 1331084]; GO_component: GO:0005665 - DNA-directed RNA polymerase II, core complex [Evidence IDA] [PMID 2183013]; GO_component: GO:0005665 - DNA-directed RNA polymerase II, core complex [Evidence IDA] [PMID 2186966]; GO_component: GO:0005666 - DNA-directed RNA polymerase III complex [Evidence IDA] [PMID 10611227]; GO_component: GO:0005666 - DNA-directed RNA polymerase III complex [Evidence IDA] [PMID 3905793]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0003899 - DNA-directed RNA polymerase activity [Evidence IEA,IEA]; GO_function: GO:0001054 - RNA polymerase I activity [Evidence IDA] [PMID 9837969]; GO_function: GO:0001055 - RNA polymerase II activity [Evidence IDA] [PMID 8288647]; GO_function: GO:0001056 - RNA polymerase III activity [Evidence IDA] [PMID 3905793]; GO_function: GO:0003968 - RNA-directed RNA polymerase activity [Evidence IDA] [PMID 18004386]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; GO_process: GO:0042797 - tRNA transcription from RNA polymerase III promoter [Evidence IDA] [PMID 3905793]; GO_process: GO:0006360 - transcription from RNA polymerase I promoter [Evidence IDA] [PMID 9837969]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IMP] [PMID 12697831]; GO_process: GO:0006383 - transcription from RNA polymerase III promoter [Evidence IMP] [PMID 12697831]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; DNA-directed RNA polymerase core subunit RPB6 5584525 RPO26 30033693 RPO26 Sugiyamaella lignohabitans DNA-directed RNA polymerase core subunit RPB6 XP_018736027.1 5583929 R 796027 CDS AWJ20_1847 30033694 5585140..5586291 A 1 NC_031672.1 top hit is XP_002839470.1 originated in Tuber melanosporum Mel28; conserved fungal protein; uncharacterized protein 5586291 tam14 30033694 tam14 Sugiyamaella lignohabitans uncharacterized protein XP_018736028.1 5585140 D 796027 CDS AWJ20_1848 30033695 complement(5587023..5587985) A 1 NC_031672.1 Ferric reductase; reduces siderophore-bound iron prior to uptake by transporters; expression induced by low iron levels; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016021 - integral component of membrane [Evidence ISS] [PMID 9726978]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 11120744]; GO_function: GO:0052851 - ferric-chelate reductase (NADPH) activity [Evidence IEA]; GO_function: GO:0000293 - ferric-chelate reductase activity [Evidence IGI] [PMID 11120744]; GO_function: GO:0000293 - ferric-chelate reductase activity [Evidence ISA] [PMID 9726978]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_process: GO:0006879 - cellular iron ion homeostasis [Evidence IEP,IMP] [PMID 10341420]; GO_process: GO:0006879 - cellular iron ion homeostasis [Evidence IEP,IMP] [PMID 9726978]; GO_process: GO:0006811 - ion transport [Evidence IEA]; GO_process: GO:0055072 - iron ion homeostasis [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0015891 - siderophore transport [Evidence IMP] [PMID 9726978]; Fre3p 5587985 FRE3 30033695 FRE3 Sugiyamaella lignohabitans Fre3p XP_018736029.1 5587023 R 796027 CDS AWJ20_1849 30033696 5591312..5592784 A 1 NC_031672.1 Protein serine/threonine phosphatase; regulates Hsp90 chaperone by affecting its ATPase and cochaperone binding activities; has similarity to human phosphatase PP5; present in both the nucleus and cytoplasm; expressed during logarithmic growth; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 12694636]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 12694636]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA,IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004721 - phosphoprotein phosphatase activity [Evidence IEA,IEA,IEA]; GO_function: GO:0004722 - protein serine/threonine phosphatase activity [Evidence IDA] [PMID 12694636]; GO_function: GO:0004722 - protein serine/threonine phosphatase activity [Evidence ISS] [PMID 7925273]; GO_process: GO:0006470 - protein dephosphorylation [Evidence IEA]; GO_process: GO:0006470 - protein dephosphorylation [Evidence IDA,ISS] [PMID 7925273]; Ppt1p 5592784 PPT1 30033696 PPT1 Sugiyamaella lignohabitans Ppt1p XP_018736030.1 5591312 D 796027 CDS AWJ20_1850 30033698 complement(5592945..5593541) A 1 NC_031672.1 Constituent of 66S pre-ribosomal particles; involved in 60S ribosomal subunit biogenesis; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 10684247]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 10684247]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11914276]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 11583614]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 17443350]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0042273 - ribosomal large subunit biogenesis [Evidence IMP,IPI] [PMID 11583614]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; Nop16p 5593541 NOP16 30033698 NOP16 Sugiyamaella lignohabitans Nop16p XP_018736031.1 5592945 R 796027 CDS AWJ20_1851 30033699 complement(5593762..5595027) A 1 NC_031672.1 Mannose-6-phosphate isomerase; catalyzes the interconversion of fructose-6-P and mannose-6-P; required for early steps in protein mannosylation; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0016853 - isomerase activity [Evidence IEA]; GO_function: GO:0004476 - mannose-6-phosphate isomerase activity [Evidence IEA,IEA]; GO_function: GO:0004476 - mannose-6-phosphate isomerase activity [Evidence IDA] [PMID 8011630]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0009298 - GDP-mannose biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0009298 - GDP-mannose biosynthetic process [Evidence IMP] [PMID 1377774]; GO_process: GO:0005975 - carbohydrate metabolic process [Evidence IEA]; GO_process: GO:0000032 - cell wall mannoprotein biosynthetic process [Evidence IMP] [PMID 1377774]; GO_process: GO:0006486 - protein glycosylation [Evidence IMP] [PMID 1377774]; mannose-6-phosphate isomerase PMI40 5595027 PMI40 30033699 PMI40 Sugiyamaella lignohabitans mannose-6-phosphate isomerase PMI40 XP_018736032.1 5593762 R 796027 CDS AWJ20_1852 30033700 5595872..5596579 A 1 NC_031672.1 dynactin subunit 5 5596579 30033700 AWJ20_1852 Sugiyamaella lignohabitans dynactin subunit 5 XP_018736033.1 5595872 D 796027 CDS AWJ20_1853 30033701 complement(5598866..5600806) A 1 NC_031672.1 SH3 domain protein implicated in regulating actin polymerization; able to recruit actin polymerization machinery through its SH3 domains; colocalizes with cortical actin patches and Las17p; interacts with type I myosins; GO_component: GO:0030479 - actin cortical patch [Evidence IEA]; GO_component: GO:0030479 - actin cortical patch [Evidence IDA] [PMID 12391157]; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 19053807]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 16824951]; GO_function: GO:0008047 - enzyme activator activity [Evidence IMP] [PMID 16824951]; GO_process: GO:0007015 - actin filament organization [Evidence IPI] [PMID 12391157]; GO_process: GO:0045010 - actin nucleation [Evidence IMP] [PMID 16824951]; GO_process: GO:0006897 - endocytosis [Evidence IEA]; GO_process: GO:0006897 - endocytosis [Evidence IGI] [PMID 16231105]; GO_process: GO:0009651 - response to salt stress [Evidence IGI,IPI] [PMID 12391157]; Bzz1p 5600806 BZZ1 30033701 BZZ1 Sugiyamaella lignohabitans Bzz1p XP_018736034.1 5598866 R 796027 CDS AWJ20_1854 30033702 5601860..5602129 A 1 NC_031672.1 Nuclear envelope protein; interacts with GDP-bound Gsp1p and with proteins of the nuclear pore to transport Gsp1p into the nucleus where it is an essential player in nucleocytoplasmic transport; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0005635 - nuclear envelope [Evidence IDA] [PMID 8702493]; GO_function: GO:0008536 - Ran GTPase binding [Evidence IPI] [PMID 10889207]; GO_process: GO:0006913 - nucleocytoplasmic transport [Evidence IMP] [PMID 8702493]; GO_process: GO:0006606 - protein import into nucleus [Evidence IMP] [PMID 8702493]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; Ntf2p 5602129 NTF2 30033702 NTF2 Sugiyamaella lignohabitans Ntf2p XP_018736035.1 5601860 D 796027 CDS AWJ20_1855 30033703 complement(5602327..5603841) A 1 NC_031672.1 uncharacterized protein 5603841 30033703 AWJ20_1855 Sugiyamaella lignohabitans uncharacterized protein XP_018736036.1 5602327 R 796027 CDS AWJ20_1856 30033704 5604561..5605358 A 1 NC_031672.1 uncharacterized protein 5605358 30033704 AWJ20_1856 Sugiyamaella lignohabitans uncharacterized protein XP_018736037.1 5604561 D 796027 CDS AWJ20_1857 30033705 complement(5606314..5606961) A 1 NC_031672.1 top hit is XP_002839470.1 originated in Tuber melanosporum Mel28; conserved fungal protein; uncharacterized protein 5606961 tam14 30033705 tam14 Sugiyamaella lignohabitans uncharacterized protein XP_018736038.1 5606314 R 796027 CDS AWJ20_1858 30033706 5608366..5610060 A 1 NC_031672.1 Mitochondrial glutamyl-tRNA synthetase; predicted to be palmitoylated; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IMP] [PMID 7607232]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0004812 - aminoacyl-tRNA ligase activity [Evidence IEA,IEA]; GO_function: GO:0004818 - glutamate-tRNA ligase activity [Evidence IEA,IEA]; GO_function: GO:0004818 - glutamate-tRNA ligase activity [Evidence ISA] [PMID 7607232]; GO_function: GO:0050561 - glutamate-tRNA(Gln) ligase activity [Evidence IDA] [PMID 15706032]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0016876 - ligase activity, forming aminoacyl-tRNA and related compounds [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_function: GO:0000049 - tRNA binding [Evidence IEA]; GO_process: GO:0006424 - glutamyl-tRNA aminoacylation [Evidence IEA]; GO_process: GO:0006424 - glutamyl-tRNA aminoacylation [Evidence ISA] [PMID 7607232]; GO_process: GO:0070149 - mitochondrial glutamyl-tRNA aminoacylation [Evidence IC] [PMID 7607232]; GO_process: GO:0032543 - mitochondrial translation [Evidence IMP] [PMID 7607232]; GO_process: GO:0043039 - tRNA aminoacylation [Evidence IEA]; GO_process: GO:0006418 - tRNA aminoacylation for protein translation [Evidence IEA]; GO_process: GO:0006412 - translation [Evidence IEA]; glutamate--tRNA ligase MSE1 5610060 MSE1 30033706 MSE1 Sugiyamaella lignohabitans glutamate--tRNA ligase MSE1 XP_018736039.1 5608366 D 796027 CDS AWJ20_1859 30033707 complement(5610117..5613269) A 1 NC_031672.1 Component of the SMC5-SMC6 complex; this complex plays a key role in the removal of X-shaped DNA structures that arise between sister chromatids during DNA replication and repair; binds single-stranded DNA and has ATPase activity; S. pombe homolog forms a heterodimer with S. pombe Rad18p that is involved in DNA repair; GO_component: GO:0030915 - Smc5-Smc6 complex [Evidence IEA]; GO_component: GO:0030915 - Smc5-Smc6 complex [Evidence IDA] [PMID 15738391]; GO_component: GO:0005694 - chromosome [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11927594]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0016887 - ATPase activity [Evidence IDA] [PMID 21293191]; GO_function: GO:0019789 - SUMO ligase activity [Evidence IDA] [PMID 15738391]; GO_function: GO:0003684 - damaged DNA binding [Evidence IDA] [PMID 16793545]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0003697 - single-stranded DNA binding [Evidence IDA] [PMID 21293191]; GO_process: GO:0006310 - DNA recombination [Evidence IEA]; GO_process: GO:0006281 - DNA repair [Evidence IEA,IEA]; GO_process: GO:0006281 - DNA repair [Evidence IDA] [PMID 11927594]; GO_process: GO:0006281 - DNA repair [Evidence IMP] [PMID 15738391]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0051304 - chromosome separation [Evidence IMP] [PMID 15793567]; GO_process: GO:0000724 - double-strand break repair via homologous recombination [Evidence IEA]; GO_process: GO:0000725 - recombinational repair [Evidence IPI] [PMID 19995966]; GO_process: GO:0071139 - resolution of recombination intermediates [Evidence IMP] [PMID 20159973]; DNA repair ATPase SMC5 5613269 SMC5 30033707 SMC5 Sugiyamaella lignohabitans DNA repair ATPase SMC5 XP_018736040.1 5610117 R 796027 CDS AWJ20_1860 30033709 5614172..5615476 A 1 NC_031672.1 uncharacterized protein 5615476 30033709 AWJ20_1860 Sugiyamaella lignohabitans uncharacterized protein XP_018736041.1 5614172 D 796027 CDS AWJ20_1861 30033710 complement(5615706..5616470) A 1 NC_031672.1 Peripheral peroxisomal membrane peroxin 5616470 30033710 AWJ20_1861 Sugiyamaella lignohabitans Peripheral peroxisomal membrane peroxin XP_018736042.1 5615706 R 796027 CDS AWJ20_1862 30033711 5617787..5618860 A 1 NC_031672.1 uncharacterized protein 5618860 30033711 AWJ20_1862 Sugiyamaella lignohabitans uncharacterized protein XP_018736043.1 5617787 D 796027 CDS AWJ20_1863 30033712 complement(5619531..5620751) A 1 NC_031672.1 Pantothenate kinase, ATP:D-pantothenate 4'-phosphotransferase; catalyzes the first committed step in the universal biosynthetic pathway for synthesis of coenzyme A (CoA); transcriptionally regulated by Upc2p via a sterol response element; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14690591]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14690591]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0004594 - pantothenate kinase activity [Evidence IEA,IEA]; GO_function: GO:0004594 - pantothenate kinase activity [Evidence IMP] [PMID 19266201]; GO_function: GO:0004594 - pantothenate kinase activity [Evidence ISS] [PMID 9890959]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0015937 - coenzyme A biosynthetic process [Evidence IEA,IEA,IEA]; GO_process: GO:0015937 - coenzyme A biosynthetic process [Evidence IGI] [PMID 19266201]; GO_process: GO:0015937 - coenzyme A biosynthetic process [Evidence ISS] [PMID 9890959]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; pantothenate kinase 5620751 CAB1 30033712 CAB1 Sugiyamaella lignohabitans pantothenate kinase XP_018736044.1 5619531 R 796027 CDS AWJ20_1864 30033713 5621918..5622901 A 1 NC_031672.1 AP4A phosphorylase; bifunctional diadenosine 5',5'''-P1,P4-tetraphosphate phosphorylase and ADP sulfurylase involved in catabolism of bis(5'-nucleosidyl) tetraphosphates; catalyzes phosphorolysis of dinucleoside oligophosphates, cleaving substrates' alpha/beta-anhydride bond and introducing Pi into the beta-position of the corresponding NDP formed; protein abundance increases under DNA replication stress; APA1 has a paralog, APA2, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003877 - ATP adenylyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0008796 - bis(5'-nucleosyl)-tetraphosphatase activity [Evidence IDA,IGI,IMP] [PMID 2174863]; GO_function: GO:0008796 - bis(5'-nucleosyl)-tetraphosphatase activity [Evidence IDA,IMP] [PMID 2556364]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016779 - nucleotidyltransferase activity [Evidence IEA]; GO_function: GO:0004780 - sulfate adenylyltransferase (ADP) activity [Evidence IEA]; GO_function: GO:0004780 - sulfate adenylyltransferase (ADP) activity [Evidence IDA,IMP] [PMID 2556364]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0009164 - nucleoside catabolic process [Evidence IDA,IGI,IMP] [PMID 2174863]; GO_process: GO:0009165 - nucleotide biosynthetic process [Evidence IDA] [PMID 2172926]; GO_process: GO:0009117 - nucleotide metabolic process [Evidence IEA]; Apa1p 5622901 APA1 30033713 APA1 Sugiyamaella lignohabitans Apa1p XP_018736045.1 5621918 D 796027 CDS AWJ20_1865 30033714 complement(5623073..5624599) A 1 NC_031672.1 Ribose methyltransferase; modifies a functionally critical, conserved nucleotide in mitochondrial 21S rRNA; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 8643404]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0008173 - RNA methyltransferase activity [Evidence IEA]; GO_function: GO:0008168 - methyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0008989 - rRNA (guanine-N1-)-methyltransferase activity [Evidence IDA] [PMID 8643404]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0001510 - RNA methylation [Evidence IEA]; GO_process: GO:0006396 - RNA processing [Evidence IEA]; GO_process: GO:0032259 - methylation [Evidence IEA]; GO_process: GO:0000154 - rRNA modification [Evidence IDA] [PMID 8643404]; Mrm1p 5624599 MRM1 30033714 MRM1 Sugiyamaella lignohabitans Mrm1p XP_018736046.1 5623073 R 796027 CDS AWJ20_1866 30033715 5625083..5625391 A 1 NC_031672.1 Subunit 7 of ubiquinol cytochrome-c reductase (Complex III); Complex III is a component of the mitochondrial inner membrane electron transport chain; oriented facing the mitochondrial matrix; N-terminus appears to play a role in complex assembly; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005750 - mitochondrial respiratory chain complex III [Evidence IEA]; GO_component: GO:0005750 - mitochondrial respiratory chain complex III [Evidence IDA] [PMID 10873857]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0070469 - respiratory chain [Evidence IEA]; GO_function: GO:0008121 - ubiquinol-cytochrome-c reductase activity [Evidence IMP] [PMID 2540976]; GO_process: GO:0009060 - aerobic respiration [Evidence IMP] [PMID 2540976]; GO_process: GO:0006122 - mitochondrial electron transport, ubiquinol to cytochrome c [Evidence IEA]; GO_process: GO:0006122 - mitochondrial electron transport, ubiquinol to cytochrome c [Evidence IMP] [PMID 2540976]; GO_process: GO:0034551 - mitochondrial respiratory chain complex III assembly [Evidence IMP] [PMID 11556808]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; ubiquinol--cytochrome-c reductase subunit 7 5625391 QCR7 30033715 QCR7 Sugiyamaella lignohabitans ubiquinol--cytochrome-c reductase subunit 7 XP_018736047.1 5625083 D 796027 CDS AWJ20_1867 30033716 complement(5625888..5629076) A 1 NC_031672.1 putative serine/threonine protein kinase KIC1 5629076 KIC1 30033716 KIC1 Sugiyamaella lignohabitans putative serine/threonine protein kinase KIC1 XP_018736048.1 5625888 R 796027 CDS AWJ20_1868 30033717 complement(5629637..5630290) A 1 NC_031672.1 Imidazoleglycerol-phosphate dehydratase; catalyzes the sixth step in histidine biosynthesis; mutations cause histidine auxotrophy and sensitivity to Cu, Co, and Ni salts; transcription is regulated by general amino acid control via Gcn4p; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0004424 - imidazoleglycerol-phosphate dehydratase activity [Evidence IEA,IEA]; GO_function: GO:0004424 - imidazoleglycerol-phosphate dehydratase activity [Evidence IMP] [PMID 14190241]; GO_function: GO:0004424 - imidazoleglycerol-phosphate dehydratase activity [Evidence IDA] [PMID 341150]; GO_function: GO:0016829 - lyase activity [Evidence IEA]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0000105 - histidine biosynthetic process [Evidence IEA,IEA,IEA]; GO_process: GO:0000105 - histidine biosynthetic process [Evidence IMP] [PMID 14190241]; GO_process: GO:0000105 - histidine biosynthetic process [Evidence IDA] [PMID 341150]; imidazoleglycerol-phosphate dehydratase HIS3 5630290 HIS3 30033717 HIS3 Sugiyamaella lignohabitans imidazoleglycerol-phosphate dehydratase HIS3 XP_018736049.1 5629637 R 796027 CDS AWJ20_1869 30033718 complement(5630559..5631962) A 1 NC_031672.1 Putative hydrolase acting on ester bonds; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016788 - hydrolase activity, acting on ester bonds [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0016042 - lipid catabolic process [Evidence IEA,IEA]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; putative hydrolase 5631962 30033718 AWJ20_1869 Sugiyamaella lignohabitans putative hydrolase XP_018736050.1 5630559 R 796027 CDS AWJ20_1870 30033720 complement(5632478..5634466) A 1 NC_031672.1 uncharacterized protein 5634466 30033720 AWJ20_1870 Sugiyamaella lignohabitans uncharacterized protein XP_018736051.1 5632478 R 796027 CDS AWJ20_1871 30033721 complement(5639366..5640442) A 1 NC_031672.1 similar to Coprinopsis cinerea okayama7#130 XP_001830383.1; ketoreductase 5640442 IFA38 30033721 IFA38 Sugiyamaella lignohabitans ketoreductase XP_018736052.1 5639366 R 796027 CDS AWJ20_1872 30033722 5642187..5643536 A 1 NC_031672.1 Histone chaperone; involved in histone exchange by removing and replacing histone H2A-H2B dimers or histone variant dimers from assembled nucleosomes; involved in the transport of H2A and H2B histones to the nucleus; required for the regulation of microtubule dynamics during mitosis; interacts with mitotic cyclin Clb2p; controls bud morphogenesis; phosphorylated by CK2; protein abundance increases in response to DNA replication stress; GO_component: GO:0005935 - cellular bud neck [Evidence IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 7622566]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IPI] [PMID 10767562]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0030332 - cyclin binding [Evidence IPI] [PMID 7622566]; GO_function: GO:0008047 - enzyme activator activity [Evidence IDA] [PMID 22308335]; GO_function: GO:0042393 - histone binding [Evidence IDA] [PMID 17289584]; GO_function: GO:0042393 - histone binding [Evidence IDA] [PMID 21348863]; GO_process: GO:0007117 - budding cell bud growth [Evidence IGI,IMP] [PMID 13680156]; GO_process: GO:0006334 - nucleosome assembly [Evidence IEA]; GO_process: GO:0006334 - nucleosome assembly [Evidence IDA] [PMID 1400414]; GO_process: GO:0006334 - nucleosome assembly [Evidence IDA,ISS] [PMID 2016313]; GO_process: GO:0006337 - nucleosome disassembly [Evidence IDA] [PMID 16492771]; GO_process: GO:0043085 - positive regulation of catalytic activity [Evidence IDA] [PMID 22308335]; GO_process: GO:0031116 - positive regulation of microtubule polymerization [Evidence IMP] [PMID 7622567]; GO_process: GO:0032968 - positive regulation of transcription elongation from RNA polymerase II promoter [Evidence IDA] [PMID 22308335]; GO_process: GO:0006606 - protein import into nucleus [Evidence IMP] [PMID 12456659]; histone chaperone NAP1 5643536 NAP1 30033722 NAP1 Sugiyamaella lignohabitans histone chaperone NAP1 XP_018736053.1 5642187 D 796027 CDS AWJ20_1873 30033723 5645601..5647403 A 1 NC_031672.1 uncharacterized protein 5647403 30033723 AWJ20_1873 Sugiyamaella lignohabitans uncharacterized protein XP_018736054.1 5645601 D 796027 CDS AWJ20_1874 30033724 5647717..5650833 A 1 NC_031672.1 Multiubiquitin chain assembly factor (E4); proteasome processivity factor that elongates polyUb chains on substrates, opposing Ubp6p, a branched polyubiquitin protease; required for retrograde transport of misfolded proteins during ERAD; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0000502 - proteasome complex [Evidence IDA] [PMID 12408819]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence IEA]; GO_function: GO:0034450 - ubiquitin-ubiquitin ligase activity [Evidence IDA] [PMID 17190603]; GO_process: GO:0030433 - ER-associated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 17190603]; GO_process: GO:0010994 - free ubiquitin chain polymerization [Evidence IMP] [PMID 22497224]; GO_process: GO:0000209 - protein polyubiquitination [Evidence IDA] [PMID 17190603]; GO_process: GO:0042787 - protein ubiquitination involved in ubiquitin-dependent protein catabolic process [Evidence IBA]; ubiquitin-ubiquitin ligase HUL5 5650833 HUL5 30033724 HUL5 Sugiyamaella lignohabitans ubiquitin-ubiquitin ligase HUL5 XP_018736055.1 5647717 D 796027 CDS AWJ20_1876 30033726 complement(5661317..5662411) A 1 NC_031672.1 uncharacterized protein 5662411 30033726 AWJ20_1876 Sugiyamaella lignohabitans uncharacterized protein XP_018736056.1 5661317 R 796027 CDS AWJ20_1877 30033727 5664769..5665902 A 1 NC_031672.1 uncharacterized protein 5665902 30033727 AWJ20_1877 Sugiyamaella lignohabitans uncharacterized protein XP_018736057.1 5664769 D 796027 CDS AWJ20_1878 30033728 complement(5666418..5666963) A 1 NC_031672.1 uncharacterized protein 5666963 30033728 AWJ20_1878 Sugiyamaella lignohabitans uncharacterized protein XP_018736058.1 5666418 R 796027 CDS AWJ20_1879 30033729 5669896..5671587 A 1 NC_031672.1 Deletion suppressor of mpt5 mutation; relocalizes from bud neck to cytoplasm upon DNA replication stress; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 22842922]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; Dsf2p 5671587 DSF2 30033729 DSF2 Sugiyamaella lignohabitans Dsf2p XP_018736059.1 5669896 D 796027 CDS AWJ20_1880 30033731 5677865..5679520 A 1 NC_031672.1 uncharacterized protein 5679520 30033731 AWJ20_1880 Sugiyamaella lignohabitans uncharacterized protein XP_018736060.1 5677865 D 796027 CDS AWJ20_1881 30033732 complement(5679572..5681872) A 1 NC_031672.1 Protein required for mismatch repair in mitosis and meiosis; also required for crossing over during meiosis; forms a complex with Pms1p and Msh2p-Msh3p during mismatch repair; human homolog is associated with hereditary non-polyposis colon cancer; GO_component: GO:0032389 - MutLalpha complex [Evidence IPI] [PMID 10570173]; GO_component: GO:0097587 - MutLgamma complex [Evidence IPI] [PMID 9770499]; GO_component: GO:0005712 - chiasma [Evidence IBA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0000795 - synaptonemal complex [Evidence IBA]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0005524 - ATP binding [Evidence IMP] [PMID 10938116]; GO_function: GO:0016887 - ATPase activity [Evidence IDA,IMP] [PMID 11717305]; GO_function: GO:0032135 - DNA insertion or deletion binding [Evidence IDA] [PMID 9368761]; GO_function: GO:0032139 - dinucleotide insertion or deletion binding [Evidence IDA] [PMID 9368761]; GO_function: GO:0003690 - double-stranded DNA binding [Evidence IDA] [PMID 11575920]; GO_function: GO:0000404 - heteroduplex DNA loop binding [Evidence IDA] [PMID 9368761]; GO_function: GO:0030983 - mismatched DNA binding [Evidence IEA]; GO_function: GO:0003697 - single-stranded DNA binding [Evidence IDA] [PMID 11575920]; GO_process: GO:0006281 - DNA repair [Evidence IEA]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0000713 - meiotic heteroduplex formation [Evidence IMP] [PMID 15654114]; GO_process: GO:0000710 - meiotic mismatch repair [Evidence IMP] [PMID 16702432]; GO_process: GO:0000710 - meiotic mismatch repair [Evidence IMP] [PMID 23316435]; GO_process: GO:0006298 - mismatch repair [Evidence IEA]; GO_process: GO:0006298 - mismatch repair [Evidence IMP] [PMID 2685551]; GO_process: GO:0007131 - reciprocal meiotic recombination [Evidence IMP] [PMID 10570173]; mismatch repair ATPase MLH1 5681872 MLH1 30033732 MLH1 Sugiyamaella lignohabitans mismatch repair ATPase MLH1 XP_018736061.1 5679572 R 796027 CDS AWJ20_1882 30033733 5682218..5683222 A 1 NC_031672.1 Component of the SMC5-SMC6 complex; this complex plays a key role in the removal of X-shaped DNA structures that arise between sister chromatids during DNA replication and repair; GO_component: GO:0030915 - Smc5-Smc6 complex [Evidence IEA]; GO_component: GO:0030915 - Smc5-Smc6 complex [Evidence IDA] [PMID 15738391]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0019789 - SUMO ligase activity [Evidence IDA] [PMID 15738391]; GO_process: GO:0006310 - DNA recombination [Evidence IEA]; GO_process: GO:0006281 - DNA repair [Evidence IEA,IEA]; GO_process: GO:0006281 - DNA repair [Evidence IMP] [PMID 15738391]; GO_process: GO:0006281 - DNA repair [Evidence IMP,IPI] [PMID 15752197]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; Nse4p 5683222 NSE4 30033733 NSE4 Sugiyamaella lignohabitans Nse4p XP_018736062.1 5682218 D 796027 CDS AWJ20_1883 30033734 complement(5683670..5684941) A 1 NC_031672.1 Protein involved in threonylcarbamoyl adenosine biosynthesis; Sua5p and Qri7p are necessary and sufficient for RNA t6A modification in vitro; highly conserved mitochondrial protein; essential for t6A modification of mitochondrial tRNAs that decode ANN codons; similar to Kae1p and E. coli YgjD, both of which are also required for tRNA t6A modification; when directed to the cytoplasm, complements the essential function of Kae1p in the KEOPS complex; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016746 - transferase activity, transferring acyl groups [Evidence IEA]; GO_function: GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups [Evidence IEA]; GO_process: GO:0072670 - mitochondrial tRNA threonylcarbamoyladenosine modification [Evidence IMP] [PMID 21183954]; GO_process: GO:0008033 - tRNA processing [Evidence IEA]; GO_process: GO:0070526 - threonylcarbamoyladenosine biosynthetic process [Evidence IEA]; GO_process: GO:0070526 - threonylcarbamoyladenosine biosynthetic process [Evidence IDA] [PMID 23620299]; Qri7p 5684941 QRI7 30033734 QRI7 Sugiyamaella lignohabitans Qri7p XP_018736063.1 5683670 R 796027 CDS AWJ20_1884 30033735 5685937..5687436 A 1 NC_031672.1 Cytoplasmic aldehyde dehydrogenase; involved in ethanol oxidation and beta-alanine biosynthesis; uses NAD+ as the preferred coenzyme; expression is stress induced and glucose repressed; very similar to Ald3p; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005737 - cytoplasm [Evidence ISS] [PMID 8801420]; GO_function: GO:0004029 - aldehyde dehydrogenase (NAD) activity [Evidence IEA]; GO_function: GO:0004029 - aldehyde dehydrogenase (NAD) activity [Evidence ISS] [PMID 10407263]; GO_function: GO:0004029 - aldehyde dehydrogenase (NAD) activity [Evidence IMP] [PMID 12586697]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0016620 - oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor [Evidence IEA]; GO_process: GO:0019483 - beta-alanine biosynthetic process [Evidence IMP] [PMID 12586697]; GO_process: GO:0006081 - cellular aldehyde metabolic process [Evidence ISS] [PMID 10407263]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0015940 - pantothenate biosynthetic process [Evidence IEA]; GO_process: GO:0006598 - polyamine catabolic process [Evidence IGI,IMP] [PMID 12586697]; aldehyde dehydrogenase (NAD(+)) ALD2 5687436 ALD2 30033735 ALD2 Sugiyamaella lignohabitans aldehyde dehydrogenase (NAD(+)) ALD2 XP_018736064.1 5685937 D 796027 CDS AWJ20_1885 30033736 5688497..5689315 A 1 NC_031672.1 Protein required for maturation of mitochondrial [4Fe-4S] proteins; functions in a complex with Isa2p and possibly Iba57p; isa1 deletion causes loss of mitochondrial DNA and respiratory deficiency; depletion reduces growth on nonfermentable carbon sources; functional ortholog of bacterial A-type ISC proteins; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA]; GO_component: GO:0005759 - mitochondrial matrix [Evidence IDA] [PMID 10805735]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_function: GO:0005506 - iron ion binding [Evidence IDA] [PMID 21987576]; GO_function: GO:0051536 - iron-sulfur cluster binding [Evidence IEA]; GO_function: GO:0051536 - iron-sulfur cluster binding [Evidence ISA] [PMID 10748136]; GO_function: GO:0005198 - structural molecule activity [Evidence IEA]; GO_process: GO:0009102 - biotin biosynthetic process [Evidence IGI,IMP] [PMID 17259550]; GO_process: GO:0016226 - iron-sulfur cluster assembly [Evidence IEA]; GO_process: GO:0016226 - iron-sulfur cluster assembly [Evidence IMP] [PMID 10748136]; GO_process: GO:0016226 - iron-sulfur cluster assembly [Evidence IGI,IMP] [PMID 10805735]; GO_process: GO:0016226 - iron-sulfur cluster assembly [Evidence IMP] [PMID 12065597]; Isa1p 5689315 ISA1 30033736 ISA1 Sugiyamaella lignohabitans Isa1p XP_018736065.1 5688497 D 796027 CDS AWJ20_1886 30033737 complement(5689476..5692619) A 1 NC_031672.1 F-box protein required for both the G1/S and G2/M phase transitions; modular substrate specificity factor which associates with core SCF (Cdc53p, Skp1p and Hrt1p/Rbx1p) to form the SCFCdc4 complex; SCFCdc4 acts as a ubiquitin-protein ligase directing ubiquitination of cyclin-dependent kinase (CDK) phosphorylated substrates, such as: Sic1p, Far1p, Cdc6p, Clb6p, and Cln3p; GO_component: GO:0019005 - SCF ubiquitin ligase complex [Evidence IDA,IPI] [PMID 9346238]; GO_component: GO:0019005 - SCF ubiquitin ligase complex [Evidence IDA,IPI] [PMID 9346239]; GO_component: GO:0043224 - nuclear SCF ubiquitin ligase complex [Evidence IDA] [PMID 11080155]; GO_component: GO:0016363 - nuclear matrix [Evidence IDA] [PMID 2244914]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11080155]; GO_function: GO:0050815 - phosphoserine binding [Evidence IDA] [PMID 23314252]; GO_function: GO:0043130 - ubiquitin binding [Evidence IDA] [PMID 21070969]; GO_function: GO:0061630 - ubiquitin protein ligase activity [Evidence IDA] [PMID 9346238]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence IDA] [PMID 9346239]; GO_process: GO:0000082 - G1/S transition of mitotic cell cycle [Evidence IMP] [PMID 10409741]; GO_process: GO:0000086 - G2/M transition of mitotic cell cycle [Evidence IGI,IMP] [PMID 10409741]; GO_process: GO:0000086 - G2/M transition of mitotic cell cycle [Evidence IGI] [PMID 7954792]; GO_process: GO:0031146 - SCF-dependent proteasomal ubiquitin-dependent protein catabolic process [Evidence IDA] [PMID 9346238]; GO_process: GO:0031146 - SCF-dependent proteasomal ubiquitin-dependent protein catabolic process [Evidence IDA] [PMID 9346239]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0007126 - meiotic nuclear division [Evidence IMP] [PMID 328339]; GO_process: GO:0007067 - mitotic nuclear division [Evidence IEA]; GO_process: GO:0016567 - protein ubiquitination [Evidence IEA]; GO_process: GO:0042787 - protein ubiquitination involved in ubiquitin-dependent protein catabolic process [Evidence IDA] [PMID 9346238]; GO_process: GO:0042787 - protein ubiquitination involved in ubiquitin-dependent protein catabolic process [Evidence IDA] [PMID 9346239]; GO_process: GO:0030435 - sporulation resulting in formation of a cellular spore [Evidence IEA]; SCF ubiquitin ligase complex subunit CDC4 5692619 CDC4 30033737 CDC4 Sugiyamaella lignohabitans SCF ubiquitin ligase complex subunit CDC4 XP_018736066.1 5689476 R 796027 CDS AWJ20_1887 30033738 complement(5695329..5696006) A 1 NC_031672.1 uncharacterized protein 5696006 30033738 AWJ20_1887 Sugiyamaella lignohabitans uncharacterized protein XP_018736067.1 5695329 R 796027 CDS AWJ20_1888 30033739 5698612..5701362 A 1 NC_031672.1 SUMO protease ULP1 5701362 ULP1 30033739 ULP1 Sugiyamaella lignohabitans SUMO protease ULP1 XP_018736068.1 5698612 D 796027 CDS AWJ20_1889 30033740 complement(5701473..5704406) A 1 NC_031672.1 Integral inner mitochondrial membrane protein; role in maintaining mitochondrial nucleoid structure and number; mutants exhibit an increased rate of mitochondrial DNA escape; shows some sequence similarity to exonucleases; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0031305 - integral component of mitochondrial inner membrane [Evidence IDA] [PMID 8649384]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0000002 - mitochondrial genome maintenance [Evidence IMP] [PMID 8514129]; Yme2p 5704406 YME2 30033740 YME2 Sugiyamaella lignohabitans Yme2p XP_018736069.1 5701473 R 796027 CDS AWJ20_1890 30033742 5705283..5706854 A 1 NC_031672.1 Subunit of the cytosolic iron-sulfur (FeS) protein assembly machinery; required for maturation of cytosolic and nuclear FeS proteins and for normal resistance to oxidative stress; deficiency results in shortened lifespan and sensitivity to paraquat; homologous to human Narf; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 15103330]; GO_component: GO:0016020 - membrane [Evidence IDA] [PMID 15103330]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO_function: GO:0008901 - ferredoxin hydrogenase activity [Evidence ISS] [PMID 10514485]; GO_function: GO:0051536 - iron-sulfur cluster binding [Evidence IEA]; GO_function: GO:0051536 - iron-sulfur cluster binding [Evidence IDA] [PMID 19385603]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_process: GO:0016226 - iron-sulfur cluster assembly [Evidence IMP] [PMID 15103330]; GO_process: GO:0016226 - iron-sulfur cluster assembly [Evidence IMP] [PMID 19385603]; Nar1p 5706854 NAR1 30033742 NAR1 Sugiyamaella lignohabitans Nar1p XP_018736070.1 5705283 D 796027 CDS AWJ20_1891 30033743 5710151..5711500 A 1 NC_031672.1 Glucose-6-phosphate dehydrogenase (G6PD); catalyzes the first step of the pentose phosphate pathway; involved in adapting to oxidative stress; homolog of the human G6PD which is deficient in patients with hemolytic anemia; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0050661 - NADP binding [Evidence IEA]; GO_function: GO:0004345 - glucose-6-phosphate dehydrogenase activity [Evidence IEA,IEA]; GO_function: GO:0004345 - glucose-6-phosphate dehydrogenase activity [Evidence IMP] [PMID 2001672]; GO_function: GO:0004345 - glucose-6-phosphate dehydrogenase activity [Evidence IMP] [PMID 2269430]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_process: GO:0006740 - NADPH regeneration [Evidence IMP] [PMID 2269430]; GO_process: GO:0005975 - carbohydrate metabolic process [Evidence IEA]; GO_process: GO:0045013 - carbon catabolite repression of transcription [Evidence IMP] [PMID 2269430]; GO_process: GO:0006006 - glucose metabolic process [Evidence IEA,IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0006098 - pentose-phosphate shunt [Evidence IEA]; GO_process: GO:0009051 - pentose-phosphate shunt, oxidative branch [Evidence IMP] [PMID 7045591]; GO_process: GO:0009051 - pentose-phosphate shunt, oxidative branch [Evidence IMP] [PMID 8299150]; GO_process: GO:0042542 - response to hydrogen peroxide [Evidence IMP] [PMID 7586028]; GO_process: GO:0042542 - response to hydrogen peroxide [Evidence IMP] [PMID 9480895]; glucose-6-phosphate dehydrogenase 5711500 ZWF1 30033743 ZWF1 Sugiyamaella lignohabitans glucose-6-phosphate dehydrogenase XP_018736071.1 5710151 D 796027 CDS AWJ20_1892 30033744 complement(5711960..5712532) A 1 NC_031672.1 Glucosamine-6-phosphate acetyltransferase; evolutionarily conserved; required for multiple cell cycle events including passage through START, DNA synthesis, and mitosis; involved in UDP-N-acetylglucosamine synthesis, forms GlcNAc6P from AcCoA; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0008080 - N-acetyltransferase activity [Evidence IEA]; GO_function: GO:0004343 - glucosamine 6-phosphate N-acetyltransferase activity [Evidence IEA]; GO_function: GO:0004343 - glucosamine 6-phosphate N-acetyltransferase activity [Evidence IDA] [PMID 9867860]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016746 - transferase activity, transferring acyl groups [Evidence IEA]; GO_process: GO:0006048 - UDP-N-acetylglucosamine biosynthetic process [Evidence IEA]; GO_process: GO:0006048 - UDP-N-acetylglucosamine biosynthetic process [Evidence IDA,IMP] [PMID 9867860]; glucosamine 6-phosphate N-acetyltransferase 5712532 GNA1 30033744 GNA1 Sugiyamaella lignohabitans glucosamine 6-phosphate N-acetyltransferase XP_018736072.1 5711960 R 796027 CDS AWJ20_1893 30033745 complement(5714639..5715682) A 1 NC_031672.1 Putative dihydrokaempferol 4-reductase; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0004090 - carbonyl reductase (NADPH) activity [Evidence ISA] [PMID 19577617]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0050662 - coenzyme binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0044237 - cellular metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; carbonyl reductase (NADPH-dependent) 5715682 30033745 AWJ20_1893 Sugiyamaella lignohabitans carbonyl reductase (NADPH-dependent) XP_018736073.1 5714639 R 796027 CDS AWJ20_1894 30033746 5717123..5719945 A 1 NC_031672.1 Putative mannosidase involved in ER-associated protein degradation; localizes to the endoplasmic reticulum; sequence similarity with seven-hairpin glycosidase (GH47) family members, such as Mns1p and Mnl1p, that hydrolyze 1,2-linked alpha-D-mannose residues; non-essential gene; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 21971548]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_function: GO:0005509 - calcium ion binding [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016798 - hydrolase activity, acting on glycosyl bonds [Evidence IEA]; GO_function: GO:0004571 - mannosyl-oligosaccharide 1,2-alpha-mannosidase activity [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0030433 - ER-associated ubiquitin-dependent protein catabolic process [Evidence IGI] [PMID 21971548]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; putative mannosidase MNL2 5719945 MNL2 30033746 MNL2 Sugiyamaella lignohabitans putative mannosidase MNL2 XP_018736074.1 5717123 D 796027 CDS AWJ20_1895 30033747 complement(5720504..5721865) A 1 NC_031672.1 NADP(+)-dependent glutamate dehydrogenase; synthesizes glutamate from ammonia and alpha-ketoglutarate; rate of alpha-ketoglutarate utilization differs from Gdh3p; expression regulated by nitrogen and carbon sources; GDH1 has a paralog, GDH3, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 4126]; GO_function: GO:0004354 - glutamate dehydrogenase (NADP+) activity [Evidence IEA]; GO_function: GO:0004354 - glutamate dehydrogenase (NADP+) activity [Evidence IDA] [PMID 11562373]; GO_function: GO:0004354 - glutamate dehydrogenase (NADP+) activity [Evidence IDA,IMP] [PMID 2932370]; GO_function: GO:0004354 - glutamate dehydrogenase (NADP+) activity [Evidence IDA,IMP] [PMID 2989290]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0016639 - oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor [Evidence IEA]; GO_process: GO:0019676 - ammonia assimilation cycle [Evidence IEP] [PMID 11356843]; GO_process: GO:0006520 - cellular amino acid metabolic process [Evidence IEA]; GO_process: GO:0006537 - glutamate biosynthetic process [Evidence IGI] [PMID 2932370]; GO_process: GO:0006537 - glutamate biosynthetic process [Evidence IGI] [PMID 2989290]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; glutamate dehydrogenase (NADP(+)) GDH1 5721865 GDH1 30033747 GDH1 Sugiyamaella lignohabitans glutamate dehydrogenase (NADP(+)) GDH1 XP_018736075.1 5720504 R 796027 CDS AWJ20_1896 30033748 complement(5724620..5726005) A 1 NC_031672.1 Probable type-III integral membrane hypothetical protein; has regions of similarity to mitochondrial electron transport proteins; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0016020 - membrane [Evidence ISS] [PMID 8635735]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; Ytp1p 5726005 YTP1 30033748 YTP1 Sugiyamaella lignohabitans Ytp1p XP_018736076.1 5724620 R 796027 CDS AWJ20_1897 30033749 complement(5728011..5729303) A 1 NC_031672.1 Type I HSP40 co-chaperone; involved in regulation of HSP90 and HSP70 functions; critical for determining cell size at Start as a function of growth rate; involved in protein translocation across membranes; member of the DnaJ family; GO_component: GO:0072380 - TRC complex [Evidence IDA] [PMID 20850366]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 1869583]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 8144572]; GO_component: GO:0048471 - perinuclear region of cytoplasm [Evidence IEA]; GO_component: GO:0048471 - perinuclear region of cytoplasm [Evidence IDA] [PMID 1869583]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0001671 - ATPase activator activity [Evidence IDA] [PMID 1400408]; GO_function: GO:0001671 - ATPase activator activity [Evidence IDA] [PMID 15342786]; GO_function: GO:0031072 - heat shock protein binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0051082 - unfolded protein binding [Evidence IEA]; GO_function: GO:0051082 - unfolded protein binding [Evidence IDA] [PMID 9774392]; GO_process: GO:0006458 - 'de novo' protein folding [Evidence IMP] [PMID 10567418]; GO_process: GO:0030433 - ER-associated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 15252059]; GO_process: GO:0030433 - ER-associated ubiquitin-dependent protein catabolic process [Evidence IGI,IMP] [PMID 15342786]; GO_process: GO:0006457 - protein folding [Evidence IEA]; GO_process: GO:0042026 - protein refolding [Evidence IDA] [PMID 9674429]; GO_process: GO:0045047 - protein targeting to ER [Evidence IMP] [PMID 1473150]; GO_process: GO:0006626 - protein targeting to mitochondrion [Evidence IMP] [PMID 1729605]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0009408 - response to heat [Evidence IEA]; GO_process: GO:0006950 - response to stress [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; type I HSP40 co-chaperone YDJ1 5729303 YDJ1 30033749 YDJ1 Sugiyamaella lignohabitans type I HSP40 co-chaperone YDJ1 XP_018736077.1 5728011 R 796027 CDS AWJ20_1898 30033750 5729874..5731019 A 1 NC_031672.1 Subunit of both the ERMES and the SAM complex; component of ERMES complex which acts as a molecular tether between the mitochondria and the ER, necessary for efficient phospholipid exchange between organelles and for mitophagy; SAM/TOB complex component that functions in the assembly of outer membrane beta-barrel proteins; involved in mitochondrial inheritance and morphology; GO_component: GO:0032865 - ERMES complex [Evidence IEA,IEA]; GO_component: GO:0032865 - ERMES complex [Evidence IPI] [PMID 13679517]; GO_component: GO:0032865 - ERMES complex [Evidence IPI] [PMID 17410204]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0031307 - integral component of mitochondrial outer membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IEA,IEA]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IDA] [PMID 16407407]; GO_component: GO:0001401 - mitochondrial sorting and assembly machinery complex [Evidence IPI] [PMID 17410204]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0051654 - establishment of mitochondrion localization [Evidence IMP] [PMID 13679517]; GO_process: GO:0000002 - mitochondrial genome maintenance [Evidence IEA]; GO_process: GO:0070096 - mitochondrial outer membrane translocase complex assembly [Evidence IMP] [PMID 15239954]; GO_process: GO:0070096 - mitochondrial outer membrane translocase complex assembly [Evidence IMP,IPI] [PMID 20026336]; GO_process: GO:0007005 - mitochondrion organization [Evidence IEA]; GO_process: GO:0007005 - mitochondrion organization [Evidence IMP] [PMID 19556461]; GO_process: GO:0015914 - phospholipid transport [Evidence IGI] [PMID 19556461]; GO_process: GO:0006461 - protein complex assembly [Evidence IEA]; GO_process: GO:0045040 - protein import into mitochondrial outer membrane [Evidence IEA]; GO_process: GO:0045040 - protein import into mitochondrial outer membrane [Evidence IMP] [PMID 17410204]; Mdm10p 5731019 MDM10 30033750 MDM10 Sugiyamaella lignohabitans Mdm10p XP_018736078.1 5729874 D 796027 CDS AWJ20_1899 30033751 5731508..5733211 A 1 NC_031672.1 uncharacterized protein 5733211 30033751 AWJ20_1899 Sugiyamaella lignohabitans uncharacterized protein XP_018736079.1 5731508 D 796027 CDS AWJ20_1900 30033754 5733624..5735102 A 1 NC_031672.1 Flavin-containing monooxygenase; localized to the cytoplasmic face of the ER membrane; catalyzes oxidation of biological thiols to maintain the ER redox buffer ratio for correct folding of disulfide-bonded proteins; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IDA] [PMID 10077572]; GO_function: GO:0004499 - N,N-dimethylaniline monooxygenase activity [Evidence IEA]; GO_function: GO:0004499 - N,N-dimethylaniline monooxygenase activity [Evidence IDA] [PMID 10600176]; GO_function: GO:0050661 - NADP binding [Evidence IEA]; GO_function: GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO_function: GO:0004497 - monooxygenase activity [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0006457 - protein folding [Evidence IDA] [PMID 10077572]; Fmo1p 5735102 FMO1 30033754 FMO1 Sugiyamaella lignohabitans Fmo1p XP_018736080.1 5733624 D 796027 CDS AWJ20_1901 30033755 5735417..5735863 A 1 NC_031672.1 Component of the TOM (Translocase of Outer Membrane) complex; responsible for initial import of mitochondrially directed proteins; mediates interaction between TOM and TIM complexes and acts as a receptor for precursor proteins; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0031307 - integral component of mitochondrial outer membrane [Evidence IDA] [PMID 16689936]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IEA,IEA,IEA]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IDA] [PMID 16407407]; GO_component: GO:0005742 - mitochondrial outer membrane translocase complex [Evidence IDA] [PMID 9774667]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0015266 - protein channel activity [Evidence IMP] [PMID 10519552]; GO_process: GO:0006886 - intracellular protein transport [Evidence IEA]; GO_process: GO:0030150 - protein import into mitochondrial matrix [Evidence IMP] [PMID 10519552]; GO_process: GO:0030150 - protein import into mitochondrial matrix [Evidence IMP] [PMID 9774667]; GO_process: GO:0045040 - protein import into mitochondrial outer membrane [Evidence IMP] [PMID 12628251]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Tom22p 5735863 TOM22 30033755 TOM22 Sugiyamaella lignohabitans Tom22p XP_018736081.1 5735417 D 796027 CDS AWJ20_1902 30033756 complement(5736134..5737369) A 1 NC_031672.1 Aspartic protease; member of the yapsin family of proteases involved in cell wall growth and maintenance; attached to the plasma membrane via a glycosylphosphatidylinositol (GPI) anchor; GO_component: GO:0031225 - anchored component of membrane [Evidence IEA]; GO_component: GO:0046658 - anchored component of plasma membrane [Evidence IDA,IPI] [PMID 11016834]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_function: GO:0004190 - aspartic-type endopeptidase activity [Evidence IEA,IEA]; GO_function: GO:0004190 - aspartic-type endopeptidase activity [Evidence IDA,ISS] [PMID 10191273]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_process: GO:0031505 - fungal-type cell wall organization [Evidence IGI] [PMID 16087741]; GO_process: GO:0006508 - proteolysis [Evidence IEA,IEA]; Yps3p 5737369 YPS3 30033756 YPS3 Sugiyamaella lignohabitans Yps3p XP_018736082.1 5736134 R 796027 CDS AWJ20_1903 30033757 5738088..5740100 A 1 NC_031672.1 Oligopeptide transporter; member of the OPT family, with potential orthologs in S. pombe and C. albicans; also plays a role in formation of mature vacuoles; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0005887 - integral component of plasma membrane [Evidence IC] [PMID 9643541]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_function: GO:0015198 - oligopeptide transporter activity [Evidence IDA,ISS] [PMID 9643541]; GO_process: GO:0006857 - oligopeptide transport [Evidence IDA,ISS] [PMID 9643541]; GO_process: GO:0015833 - peptide transport [Evidence IEA]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0042144 - vacuole fusion, non-autophagic [Evidence IMP] [PMID 19767828]; Opt2p 5740100 OPT2 30033757 OPT2 Sugiyamaella lignohabitans Opt2p XP_018736083.1 5738088 D 796027 CDS AWJ20_1904 30033758 5741989..5743224 A 1 NC_031672.1 Putative high affinity iron transporter; involved in transport of intravacuolar stores of iron; forms complex with Fet5p; expression is regulated by iron; proposed to play indirect role in endocytosis; protein abundance increases in response to DNA replication stress; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 10608875]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 14562095]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0005381 - iron ion transmembrane transporter activity [Evidence TAS] [PMID 10608875]; GO_process: GO:0006897 - endocytosis [Evidence IMP] [PMID 11378903]; GO_process: GO:0006827 - high-affinity iron ion transport [Evidence IPI] [PMID 10608875]; GO_process: GO:0006811 - ion transport [Evidence IEA]; GO_process: GO:0055072 - iron ion homeostasis [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Fth1p 5743224 FTH1 30033758 FTH1 Sugiyamaella lignohabitans Fth1p XP_018736084.1 5741989 D 796027 CDS AWJ20_1905 30033759 complement(5743494..5744039) A 1 NC_031672.1 Functional homolog of human NPC2/He1; human NPC2 is a cholesterol-binding protein whose deficiency causes Niemann-Pick type C2 disease involving retention of cholesterol in lysosomes; GO_component: GO:0000324 - fungal-type vacuole [Evidence IDA] [PMID 14562095]; GO_component: GO:0000328 - fungal-type vacuole lumen [Evidence IDA] [PMID 16278452]; GO_component: GO:0005773 - vacuole [Evidence IEA,IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0032366 - intracellular sterol transport [Evidence IGI,ISS] [PMID 16278452]; GO_process: GO:0006869 - lipid transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Npc2p 5744039 NPC2 30033759 NPC2 Sugiyamaella lignohabitans Npc2p XP_018736085.1 5743494 R 796027 CDS AWJ20_1907 30033760 5751765..5755508 A 1 NC_031672.1 uncharacterized protein 5755508 30033760 AWJ20_1907 Sugiyamaella lignohabitans uncharacterized protein XP_018736086.1 5751765 D 796027 CDS AWJ20_1908 30033761 5760721..5762037 A 1 NC_031672.1 uncharacterized protein 5762037 30033761 AWJ20_1908 Sugiyamaella lignohabitans uncharacterized protein XP_018736087.1 5760721 D 796027 CDS AWJ20_1910 30033764 complement(5762761..5764110) A 1 NC_031672.1 GABA (gamma-aminobutyrate) permease; serves as a GABA transport protein involved in the utilization of GABA as a nitrogen source; catalyzes the transport of putrescine and delta-aminolevulinic acid (ALA); localized to the vacuolar membrane; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 14985124]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0015171 - amino acid transmembrane transporter activity [Evidence IEA]; GO_function: GO:0015495 - gamma-aminobutyric acid:proton symporter activity [Evidence IGI] [PMID 8455553]; GO_function: GO:0015489 - putrescine transmembrane transporter activity [Evidence IGI] [PMID 14985124]; GO_process: GO:0003333 - amino acid transmembrane transport [Evidence IEA]; GO_process: GO:0006865 - amino acid transport [Evidence IEA]; GO_process: GO:0015812 - gamma-aminobutyric acid transport [Evidence IGI] [PMID 14985124]; GO_process: GO:0015812 - gamma-aminobutyric acid transport [Evidence IEP,IGI] [PMID 8455553]; GO_process: GO:0015847 - putrescine transport [Evidence IGI] [PMID 14985124]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IGI] [PMID 8455553]; GO_process: GO:0006810 - transport [Evidence IEA]; Uga4p 5764110 UGA4 30033764 UGA4 Sugiyamaella lignohabitans Uga4p XP_018736088.1 5762761 R 796027 CDS AWJ20_1911 30033765 complement(5766410..5767768) A 1 NC_031672.1 Pdp3p 5767768 30033765 AWJ20_1911 Sugiyamaella lignohabitans Pdp3p XP_018736089.1 5766410 R 796027 CDS AWJ20_1912 30033766 5770658..5772316 A 1 NC_031672.1 uncharacterized protein 5772316 30033766 AWJ20_1912 Sugiyamaella lignohabitans uncharacterized protein XP_018736090.1 5770658 D 796027 CDS AWJ20_1913 30033767 complement(5773663..5774448) A 1 NC_031672.1 transcription factor MCM1 5774448 MCM1 30033767 MCM1 Sugiyamaella lignohabitans transcription factor MCM1 XP_018736091.1 5773663 R 796027 CDS AWJ20_1914 30033768 complement(5782429..5782842) A 1 NC_031672.1 Translation elongation factor eIF-5A; may function in translation initiation; structural homolog of bacterial EF-P; undergoes an essential hypusination modification; HYP2 has a paralog, ANB1, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0022626 - cytosolic ribosome [Evidence IPI] [PMID 16215987]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0003723 - RNA binding [Evidence IEA,IEA]; GO_function: GO:0003723 - RNA binding [Evidence IDA] [PMID 19120453]; GO_function: GO:0043022 - ribosome binding [Evidence IEA]; GO_function: GO:0043022 - ribosome binding [Evidence IPI] [PMID 16215987]; GO_function: GO:0003746 - translation elongation factor activity [Evidence IEA,IEA]; GO_function: GO:0003746 - translation elongation factor activity [Evidence IDA,IMP] [PMID 19424157]; GO_function: GO:0003743 - translation initiation factor activity [Evidence IDA] [PMID 21451136]; GO_process: GO:0008612 - peptidyl-lysine modification to peptidyl-hypusine [Evidence IEA]; GO_process: GO:0045901 - positive regulation of translational elongation [Evidence IEA]; GO_process: GO:0045901 - positive regulation of translational elongation [Evidence IGI,IMP] [PMID 19338753]; GO_process: GO:0045901 - positive regulation of translational elongation [Evidence IDA,IMP] [PMID 19424157]; GO_process: GO:0045948 - positive regulation of translational initiation [Evidence IDA] [PMID 21451136]; GO_process: GO:0045905 - positive regulation of translational termination [Evidence IEA]; GO_process: GO:0045905 - positive regulation of translational termination [Evidence IDA] [PMID 19424157]; GO_process: GO:0006412 - translation [Evidence IEA]; GO_process: GO:0006414 - translational elongation [Evidence IEA]; GO_process: GO:0006452 - translational frameshifting [Evidence IEA]; GO_process: GO:0006452 - translational frameshifting [Evidence IMP] [PMID 19424157]; translation elongation factor eIF-5A 5782842 ANB1 30033768 ANB1 Sugiyamaella lignohabitans translation elongation factor eIF-5A XP_018736092.1 5782429 R 796027 CDS AWJ20_1915 30033769 5793395..5794366 A 1 NC_031672.1 Nitrogen catabolite repression transcriptional regulator; acts by inhibition of GLN3 transcription in good nitrogen source; has glutathione peroxidase activity and can mutate to acquire GST activity; altered form creates [URE3] prion; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 10748041]; GO_function: GO:0004602 - glutathione peroxidase activity [Evidence IEA]; GO_function: GO:0004602 - glutathione peroxidase activity [Evidence IDA] [PMID 15371425]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0051219 - phosphoprotein binding [Evidence IDA] [PMID 10604478]; GO_function: GO:0003714 - transcription corepressor activity [Evidence IGI,IPI] [PMID 8755910]; GO_process: GO:0042994 - cytoplasmic sequestering of transcription factor [Evidence IMP] [PMID 10748041]; GO_process: GO:0042128 - nitrate assimilation [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; GO_process: GO:0032447 - protein urmylation [Evidence IMP] [PMID 14551258]; GO_process: GO:0006808 - regulation of nitrogen utilization [Evidence IEA]; GO_process: GO:0006808 - regulation of nitrogen utilization [Evidence IMP] [PMID 8002570]; GO_process: GO:0006808 - regulation of nitrogen utilization [Evidence IGI,IPI] [PMID 8755910]; GO_process: GO:0010044 - response to aluminum ion [Evidence IMP] [PMID 15133656]; Ure2p 5794366 URE2 30033769 URE2 Sugiyamaella lignohabitans Ure2p XP_018736093.1 5793395 D 796027 CDS AWJ20_1916 30033770 5797688..5799178 A 1 NC_031672.1 Mitochondrial aldehyde dehydrogenase; involved in regulation or biosynthesis of electron transport chain components and acetate formation; activated by K+; utilizes NADP+ as the preferred coenzyme; constitutively expressed; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0004029 - aldehyde dehydrogenase (NAD) activity [Evidence IDA] [PMID 9473035]; GO_function: GO:0004030 - aldehyde dehydrogenase [NAD(P)+] activity [Evidence IEA]; GO_function: GO:0004030 - aldehyde dehydrogenase [NAD(P)+] activity [Evidence IDA] [PMID 9473035]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0016620 - oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor [Evidence IEA]; GO_process: GO:0019413 - acetate biosynthetic process [Evidence IMP] [PMID 15256563]; GO_process: GO:0006068 - ethanol catabolic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; aldehyde dehydrogenase (NAD(P)(+)) ALD5 5799178 ALD5 30033770 ALD5 Sugiyamaella lignohabitans aldehyde dehydrogenase (NAD(P)(+)) ALD5 XP_018736094.1 5797688 D 796027 CDS AWJ20_1917 30033771 complement(5799398..5800348) A 1 NC_031672.1 uncharacterized protein 5800348 30033771 AWJ20_1917 Sugiyamaella lignohabitans uncharacterized protein XP_018736095.1 5799398 R 796027 CDS AWJ20_1918 30033772 complement(5801249..5802325) A 1 NC_031672.1 ADP-ribosylation factor GTPase activating protein (ARF GAP); involved in ER-Golgi transport; required for prospore membrane formation; regulates phospholipase Spo14p; shares functional similarity with Glo3p; GCS1 has a paralog, SPS18, that arose from the whole genome duplication; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005856 - cytoskeleton [Evidence IMP,IPI] [PMID 10069805]; GO_component: GO:0005793 - endoplasmic reticulum-Golgi intermediate compartment [Evidence IPI] [PMID 9927415]; GO_component: GO:0005768 - endosome [Evidence IDA] [PMID 16452633]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0048471 - perinuclear region of cytoplasm [Evidence IEA]; GO_component: GO:0005802 - trans-Golgi network [Evidence IDA] [PMID 16452633]; GO_function: GO:0008060 - ARF GTPase activator activity [Evidence IEA]; GO_function: GO:0008060 - ARF GTPase activator activity [Evidence IDA,ISS] [PMID 8816753]; GO_function: GO:0005096 - GTPase activator activity [Evidence IEA]; GO_function: GO:0005096 - GTPase activator activity [Evidence IDA] [PMID 15975906]; GO_function: GO:0003779 - actin binding [Evidence IDA] [PMID 10069805]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0006888 - ER to Golgi vesicle-mediated transport [Evidence IGI,IMP] [PMID 9927415]; GO_process: GO:0043001 - Golgi to plasma membrane protein transport [Evidence IMP] [PMID 16926193]; GO_process: GO:0030037 - actin filament reorganization involved in cell cycle [Evidence IGI,IMP,IPI] [PMID 10069805]; GO_process: GO:0043547 - positive regulation of GTPase activity [Evidence IEA,IEA]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0032312 - regulation of ARF GTPase activity [Evidence IEA]; GO_process: GO:0006890 - retrograde vesicle-mediated transport, Golgi to ER [Evidence IDA,IGI,IMP] [PMID 9927415]; GO_process: GO:0006810 - transport [Evidence IEA]; Gcs1p 5802325 GCS1 30033772 GCS1 Sugiyamaella lignohabitans Gcs1p XP_018736096.1 5801249 R 796027 CDS AWJ20_1919 30033773 complement(5802876..5804885) A 1 NC_031672.1 Subunit of protein phosphatase PP4 complex; active complex is composed of catalytic subunit Pph3p and Psy2p, with Psy4p apparently providing additional substrate specificity in some cases; regulates recovery from the DNA damage checkpoint and also the gene conversion- and single-strand annealing-mediated pathways of meiotic double-strand break repair; Pph3p and Psy2p localize to foci on meiotic chromosomes; putative homolog of mammalian R3; GO_component: GO:0000794 - condensed nuclear chromosome [Evidence IDA] [PMID 20951350]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0030289 - protein phosphatase 4 complex [Evidence IDA,IMP] [PMID 16299494]; GO_component: GO:0030289 - protein phosphatase 4 complex [Evidence IDA] [PMID 17517611]; GO_function: GO:0008601 - protein phosphatase type 2A regulator activity [Evidence IDA] [PMID 17517611]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IGI] [PMID 15598824]; GO_process: GO:2000002 - negative regulation of DNA damage checkpoint [Evidence IMP] [PMID 16299494]; GO_process: GO:2000002 - negative regulation of DNA damage checkpoint [Evidence IMP] [PMID 17517611]; GO_process: GO:1902660 - negative regulation of glucose mediated signaling pathway [Evidence IMP] [PMID 24277933]; GO_process: GO:0006470 - protein dephosphorylation [Evidence IMP] [PMID 17517611]; GO_process: GO:0072462 - signal transduction involved in meiotic recombination checkpoint [Evidence IMP] [PMID 20951350]; Psy2p 5804885 PSY2 30033773 PSY2 Sugiyamaella lignohabitans Psy2p XP_018736097.1 5802876 R 796027 CDS AWJ20_1920 30033775 complement(5805250..5806062) A 1 NC_031672.1 Subunit of protein phosphatase PP4 complex; active complex is composed of catalytic subunit Pph3p and Psy2p, with Psy4p apparently providing additional substrate specificity in some cases; regulates recovery from the DNA damage checkpoint and also the gene conversion- and single-strand annealing-mediated pathways of meiotic double-strand break repair; Pph3p and Psy2p localize to foci on meiotic chromosomes; putative homolog of mammalian R3; GO_component: GO:0000794 - condensed nuclear chromosome [Evidence IDA] [PMID 20951350]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0030289 - protein phosphatase 4 complex [Evidence IDA,IMP] [PMID 16299494]; GO_component: GO:0030289 - protein phosphatase 4 complex [Evidence IDA] [PMID 17517611]; GO_function: GO:0008601 - protein phosphatase type 2A regulator activity [Evidence IDA] [PMID 17517611]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IGI] [PMID 15598824]; GO_process: GO:2000002 - negative regulation of DNA damage checkpoint [Evidence IMP] [PMID 16299494]; GO_process: GO:2000002 - negative regulation of DNA damage checkpoint [Evidence IMP] [PMID 17517611]; GO_process: GO:1902660 - negative regulation of glucose mediated signaling pathway [Evidence IMP] [PMID 24277933]; GO_process: GO:0006470 - protein dephosphorylation [Evidence IMP] [PMID 17517611]; GO_process: GO:0072462 - signal transduction involved in meiotic recombination checkpoint [Evidence IMP] [PMID 20951350]; Psy2p 5806062 PSY2 30033775 PSY2 Sugiyamaella lignohabitans Psy2p XP_018736098.1 5805250 R 796027 CDS AWJ20_1921 30033776 complement(5809247..5812057) A 1 NC_031672.1 hypothetical protein; component of the SWR1 complex, which exchanges histone variant H2AZ (Htz1p) for chromatin-bound histone H2A; required for formation of nuclear-associated array of smooth endoplasmic reticulum known as karmellae; GO_component: GO:0000812 - Swr1 complex [Evidence IDA] [PMID 14645854]; GO_component: GO:0000812 - Swr1 complex [Evidence IDA] [PMID 14690608]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0016568 - chromatin modification [Evidence IEA]; GO_process: GO:0006338 - chromatin remodeling [Evidence IDA] [PMID 14645854]; GO_process: GO:0006338 - chromatin remodeling [Evidence IGI,IMP] [PMID 14690608]; GO_process: GO:0007029 - endoplasmic reticulum organization [Evidence IMP] [PMID 12868057]; GO_process: GO:0043486 - histone exchange [Evidence IPI] [PMID 16299513]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Swc3p 5812057 SWC3 30033776 SWC3 Sugiyamaella lignohabitans Swc3p XP_018736099.1 5809247 R 796027 CDS AWJ20_1922 30033777 complement(5812413..5814719) A 1 NC_031672.1 Zinc metalloendopeptidase; found in the cytoplasm and intermembrane space of mitochondria; with Cym1p, involved in degradation of mitochondrial proteins and of presequence peptides cleaved from imported proteins; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 24390141]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 8307027]; GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IDA] [PMID 8307027]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004222 - metalloendopeptidase activity [Evidence IEA]; GO_function: GO:0004222 - metalloendopeptidase activity [Evidence IDA,IMP,ISS] [PMID 8307027]; GO_function: GO:0008237 - metallopeptidase activity [Evidence IEA,IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_process: GO:0006508 - proteolysis [Evidence IEA,IEA]; GO_process: GO:0006508 - proteolysis [Evidence IDA,IMP] [PMID 8307027]; Prd1p 5814719 PRD1 30033777 PRD1 Sugiyamaella lignohabitans Prd1p XP_018736100.1 5812413 R 796027 CDS AWJ20_1923 30033778 5815395..5816897 A 1 NC_031672.1 Dihydrolipoyl transsuccinylase; component of the mitochondrial alpha-ketoglutarate dehydrogenase complex, which catalyzes the oxidative decarboxylation of alpha-ketoglutarate to succinyl-CoA in the TCA cycle; phosphorylated; GO_component: GO:0042645 - mitochondrial nucleoid [Evidence IDA] [PMID 10869431]; GO_component: GO:0042645 - mitochondrial nucleoid [Evidence IDA] [PMID 11926067]; GO_component: GO:0009353 - mitochondrial oxoglutarate dehydrogenase complex [Evidence IDA] [PMID 2072900]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0045252 - oxoglutarate dehydrogenase complex [Evidence IEA]; GO_function: GO:0004149 - dihydrolipoyllysine-residue succinyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0004149 - dihydrolipoyllysine-residue succinyltransferase activity [Evidence ISA] [PMID 2115121]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016746 - transferase activity, transferring acyl groups [Evidence IEA,IEA]; GO_process: GO:0006103 - 2-oxoglutarate metabolic process [Evidence IMP] [PMID 2115121]; GO_process: GO:0033512 - L-lysine catabolic process to acetyl-CoA via saccharopine [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0000002 - mitochondrial genome maintenance [Evidence IGI] [PMID 10869431]; GO_process: GO:0006099 - tricarboxylic acid cycle [Evidence IEA,IEA]; GO_process: GO:0006099 - tricarboxylic acid cycle [Evidence IC] [PMID 2072900]; alpha-ketoglutarate dehydrogenase KGD2 5816897 KGD2 30033778 KGD2 Sugiyamaella lignohabitans alpha-ketoglutarate dehydrogenase KGD2 XP_018736101.1 5815395 D 796027 CDS AWJ20_1924 30033779 5819370..5820581 A 1 NC_031672.1 uncharacterized protein 5820581 30033779 AWJ20_1924 Sugiyamaella lignohabitans uncharacterized protein XP_018736102.1 5819370 D 796027 CDS AWJ20_1925 30033780 complement(join(5819604..5820880,5821859..5821904)) A 1 NC_031672.1 Enolase I, a phosphopyruvate hydratase; catalyzes conversion of 2-phosphoglycerate to phosphoenolpyruvate during glycolysis and the reverse reaction during gluconeogenesis; expression repressed in response to glucose; protein abundance increases in response to DNA replication stress; N-terminally propionylated in vivo; ENO1 has a paralog, ENO2, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0000324 - fungal-type vacuole [Evidence IDA] [PMID 16565073]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16962558]; GO_component: GO:0000015 - phosphopyruvate hydratase complex [Evidence IEA]; GO_component: GO:0000015 - phosphopyruvate hydratase complex [Evidence IDA] [PMID 6282834]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 16622836]; GO_function: GO:0016829 - lyase activity [Evidence IEA]; GO_function: GO:0000287 - magnesium ion binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004634 - phosphopyruvate hydratase activity [Evidence IEA,IEA]; GO_function: GO:0004634 - phosphopyruvate hydratase activity [Evidence IMP] [PMID 6282834]; GO_process: GO:0006094 - gluconeogenesis [Evidence IEP] [PMID 3313003]; GO_process: GO:0006096 - glycolytic process [Evidence IEA,IEA,IEA]; GO_process: GO:0006096 - glycolytic process [Evidence IMP] [PMID 6282834]; GO_process: GO:0032889 - regulation of vacuole fusion, non-autophagic [Evidence IDA,IMP] [PMID 16565073]; phosphopyruvate hydratase ENO1 5821904 ENO1 30033780 ENO1 Sugiyamaella lignohabitans phosphopyruvate hydratase ENO1 XP_018736103.1 5819604 R 796027 CDS AWJ20_1926 30033781 complement(5824427..5826055) A 1 NC_031672.1 uncharacterized protein 5826055 30033781 AWJ20_1926 Sugiyamaella lignohabitans uncharacterized protein XP_018736104.1 5824427 R 796027 CDS AWJ20_1927 30033782 5829019..5829753 A 1 NC_031672.1 uncharacterized protein 5829753 30033782 AWJ20_1927 Sugiyamaella lignohabitans uncharacterized protein XP_018736105.1 5829019 D 796027 CDS AWJ20_1928 30033783 5829825..5833259 A 1 NC_031672.1 similar to Saccharomyces cerevisiae S288c NP_116617.1; Rpo41p 5833259 RPO41 30033783 RPO41 Sugiyamaella lignohabitans Rpo41p XP_018736106.1 5829825 D 796027 CDS AWJ20_1929 30033784 complement(5837003..5839306) A 1 NC_031672.1 hypothetical protein; overexpression suppresses the growth defect of mutants lacking protein kinase A activity; involved in cAMP-mediated signaling; localized to the nucleus; similar to the mouse testis-specific protein PBS13; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 8065298]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0019933 - cAMP-mediated signaling [Evidence IGI] [PMID 8065298]; Sok1p 5839306 SOK1 30033784 SOK1 Sugiyamaella lignohabitans Sok1p XP_018736107.1 5837003 R 796027 CDS AWJ20_1930 30033786 5850781..5852403 A 1 NC_031672.1 Phosphatidylinositol:ceramide phosphoinositol transferase; required for sphingolipid synthesis; can mutate to confer aureobasidin A resistance; also known as IPC synthase; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0005794 - Golgi apparatus [Evidence IDA] [PMID 10888667]; GO_component: GO:0032580 - Golgi cisterna membrane [Evidence IEA]; GO_component: GO:0070916 - inositol phosphoceramide synthase complex [Evidence IPI] [PMID 19726565]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0045140 - inositol phosphoceramide synthase activity [Evidence IDA] [PMID 19047657]; GO_function: GO:0045140 - inositol phosphoceramide synthase activity [Evidence IMP] [PMID 9092515]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006673 - inositolphosphoceramide metabolic process [Evidence IDA] [PMID 19726565]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0030148 - sphingolipid biosynthetic process [Evidence IMP] [PMID 9092515]; GO_process: GO:0006665 - sphingolipid metabolic process [Evidence IEA]; inositol phosphorylceramide synthase 5852403 AUR1 30033786 AUR1 Sugiyamaella lignohabitans inositol phosphorylceramide synthase XP_018736108.1 5850781 D 796027 CDS AWJ20_1931 30033787 5854683..5855759 A 1 NC_031672.1 Mitochondrial NAD+ transporter; involved in the transport of NAD+ into the mitochondria (see also YEA6); member of the mitochondrial carrier subfamily; disputed role as a pyruvate transporter; has putative mouse and human orthologs; YIA6 has a paralog, YEA6, that arose from the whole genome duplication; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence ISS] [PMID 10930523]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16291748]; GO_function: GO:0051724 - NAD transporter activity [Evidence IDA,IGI,IMP] [PMID 16291748]; GO_function: GO:0005477 - pyruvate secondary active transmembrane transporter activity [Evidence IMP] [PMID 12887330]; GO_function: GO:0005477 - pyruvate secondary active transmembrane transporter activity [Evidence IDA] [PMID 16291748]; GO_function: GO:0005215 - transporter activity [Evidence ISS] [PMID 10930523]; GO_process: GO:0035352 - NAD transmembrane transport [Evidence IDA,IGI,IMP] [PMID 16291748]; GO_process: GO:0006850 - mitochondrial pyruvate transport [Evidence IMP] [PMID 12887330]; GO_process: GO:0006850 - mitochondrial pyruvate transport [Evidence IDA] [PMID 16291748]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence ISS] [PMID 10930523]; Yia6p 5855759 YIA6 30033787 YIA6 Sugiyamaella lignohabitans Yia6p XP_018736109.1 5854683 D 796027 CDS AWJ20_1932 30033788 complement(5855955..5859293) A 1 NC_031672.1 EFW99297|beta-galactosidase [Grosmannia clavigera kw1407]; beta-galactosidase 5859293 30033788 AWJ20_1932 Sugiyamaella lignohabitans beta-galactosidase XP_018736110.1 5855955 R 796027 CDS AWJ20_1933 30033789 5860199..5862886 A 1 NC_031672.1 Transcriptional activator; binds specific gene recruitment sequences and is required for DNA zip code-mediated targeting of genes to nuclear periphery; regulates proline utilization genes, constitutively binds PUT1 and PUT2 promoters as a dimer, undergoes conformational change to form active state; binds other promoters only under activating conditions; differentially phosphorylated in presence of different nitrogen sources; has a Zn(2)-Cys(6) binuclear cluster domain; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IC] [PMID 1986247]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0000978 - RNA polymerase II core promoter proximal region sequence-specific DNA binding [Evidence IDA] [PMID 1986247]; GO_function: GO:0000978 - RNA polymerase II core promoter proximal region sequence-specific DNA binding [Evidence IDA] [PMID 8846888]; GO_function: GO:0001077 - RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription [Evidence IMP] [PMID 8846888]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19111667]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19158363]; GO_function: GO:0000981 - sequence-specific DNA binding RNA polymerase II transcription factor activity [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:2001158 - positive regulation of proline catabolic process to glutamate [Evidence IMP] [PMID 2689862]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 2689862]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 8846888]; GO_process: GO:0006560 - proline metabolic process [Evidence IEA]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA,IEA]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA,IEA]; GO_process: GO:0000972 - transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery [Evidence IMP] [PMID 22579222]; Put3p 5862886 PUT3 30033789 PUT3 Sugiyamaella lignohabitans Put3p XP_018736111.1 5860199 D 796027 CDS AWJ20_1934 30033790 complement(5863207..5864475) A 1 NC_031672.1 uncharacterized protein 5864475 30033790 AWJ20_1934 Sugiyamaella lignohabitans uncharacterized protein XP_018736112.1 5863207 R 796027 CDS AWJ20_1935 30033791 complement(5868142..5870028) A 1 NC_031672.1 Protein of the AP180 family, involved in clathrin cage assembly; binds Pan1p and clathrin; YAP1801 has a paralog, YAP1802, that arose from the whole genome duplication; GO_component: GO:0030479 - actin cortical patch [Evidence TAS] [PMID 10652251]; GO_component: GO:0005933 - cellular bud [Evidence IEA]; GO_component: GO:0005935 - cellular bud neck [Evidence IEA]; GO_component: GO:0030118 - clathrin coat [Evidence IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005628 - prospore membrane [Evidence IDA] [PMID 24390141]; GO_function: GO:0005545 - 1-phosphatidylinositol binding [Evidence IEA]; GO_function: GO:0030276 - clathrin binding [Evidence IEA]; GO_function: GO:0030276 - clathrin binding [Evidence TAS] [PMID 12461563]; GO_function: GO:0005543 - phospholipid binding [Evidence IEA]; GO_process: GO:0048268 - clathrin coat assembly [Evidence IEA]; GO_process: GO:0006897 - endocytosis [Evidence IEA]; GO_process: GO:0006897 - endocytosis [Evidence IPI,ISS] [PMID 9531549]; Yap1801p 5870028 YAP1801 30033791 YAP1801 Sugiyamaella lignohabitans Yap1801p XP_018736113.1 5868142 R 796027 CDS AWJ20_1936 30033792 5871670..5873367 A 1 NC_031672.1 Sucrose transport protein SUC5 5873367 30033792 AWJ20_1936 Sugiyamaella lignohabitans Sucrose transport protein SUC5 XP_018736114.1 5871670 D 796027 CDS AWJ20_1937 30033793 5873763..5875484 A 1 NC_031672.1 Delta-1-pyrroline-5-carboxylate dehydrogenase; nuclear-encoded mitochondrial protein involved in utilization of proline as sole nitrogen source; deficiency of the human homolog causes HPII, an autosomal recessive inborn error of metabolism; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005759 - mitochondrial matrix [Evidence IDA] [PMID 3025596]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0003842 - 1-pyrroline-5-carboxylate dehydrogenase activity [Evidence IEA]; GO_function: GO:0003842 - 1-pyrroline-5-carboxylate dehydrogenase activity [Evidence IMP] [PMID 387737]; GO_function: GO:0003842 - 1-pyrroline-5-carboxylate dehydrogenase activity [Evidence IDA] [PMID 4145181]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0016620 - oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor [Evidence IEA]; GO_process: GO:0006537 - glutamate biosynthetic process [Evidence IDA] [PMID 4145181]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0006561 - proline biosynthetic process [Evidence IEA]; GO_process: GO:0010133 - proline catabolic process to glutamate [Evidence IEA]; GO_process: GO:0010133 - proline catabolic process to glutamate [Evidence IMP] [PMID 387737]; GO_process: GO:0006560 - proline metabolic process [Evidence IEA]; 1-pyrroline-5-carboxylate dehydrogenase 5875484 PUT2 30033793 PUT2 Sugiyamaella lignohabitans 1-pyrroline-5-carboxylate dehydrogenase XP_018736115.1 5873763 D 796027 CDS AWJ20_1938 30033794 5876488..5877531 A 1 NC_031672.1 uncharacterized protein 5877531 30033794 AWJ20_1938 Sugiyamaella lignohabitans uncharacterized protein XP_018736116.1 5876488 D 796027 CDS AWJ20_1939 30033795 complement(5877677..5879152) A 1 NC_031672.1 allele of CaO19.12061; ceramide glucosyltransferase 5879152 CGT1 30033795 CGT1 Sugiyamaella lignohabitans ceramide glucosyltransferase XP_018736117.1 5877677 R 796027 CDS AWJ20_1940 30033797 5880998..5881534 A 1 NC_031672.1 Essential protein required for ribosomal large subunit biogenesis; associated with pre-60S ribosomal subunits; stimulates the ATPase activity of Afg2p, which is required for release of Rlp24p from the pre-60S particle; has similarity to Rpl24Ap and Rpl24Bp; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 20670889]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 11583614]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 17443350]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 22735702]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 23212245]; GO_function: GO:0001671 - ATPase activator activity [Evidence IDA] [PMID 23185031]; GO_process: GO:1902626 - assembly of large subunit precursor of preribosome [Evidence IMP] [PMID 22735702]; GO_process: GO:0042273 - ribosomal large subunit biogenesis [Evidence IMP,IPI] [PMID 11583614]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; Rlp24p 5881534 RLP24 30033797 RLP24 Sugiyamaella lignohabitans Rlp24p XP_018736118.1 5880998 D 796027 CDS AWJ20_1941 30033798 complement(5883868..5884974) A 1 NC_031672.1 Protein with a role in translation; forms a complex with Gir2p; has similarity to mammalian developmentally regulated GTP-binding protein; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0005525 - GTP binding [Evidence IEA,IEA]; GO_function: GO:0005525 - GTP binding [Evidence ISS] [PMID 10760581]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0002181 - cytoplasmic translation [Evidence IGI] [PMID 21076151]; Rbg2p 5884974 RBG2 30033798 RBG2 Sugiyamaella lignohabitans Rbg2p XP_018736119.1 5883868 R 796027 CDS AWJ20_1942 30033799 5886791..5887702 A 1 NC_031672.1 Mitochondrial inner membrane carnitine transporter; required for carnitine-dependent transport of acetyl-CoA from peroxisomes to mitochondria during fatty acid beta-oxidation; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IDA] [PMID 10545096]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 11914276]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0005476 - carnitine:acyl carnitine antiporter activity [Evidence IDA] [PMID 10545096]; GO_process: GO:0006631 - fatty acid metabolic process [Evidence IDA] [PMID 10545096]; GO_process: GO:0006810 - transport [Evidence IEA]; Crc1p 5887702 CRC1 30033799 CRC1 Sugiyamaella lignohabitans Crc1p XP_018736120.1 5886791 D 796027 CDS AWJ20_1943 30033800 complement(5887886..5890372) A 1 NC_031672.1 Component of the microtubule-nucleating Tub4p (gamma-tubulin) complex; interacts with Spc110p at the spindle pole body (SPB) inner plaque and with Spc72p at the SPB outer plaque; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA,IEA]; GO_component: GO:0000928 - gamma-tubulin small complex, spindle pole body [Evidence IPI] [PMID 9384578]; GO_component: GO:0005822 - inner plaque of spindle pole body [Evidence IDA] [PMID 9215630]; GO_component: GO:0005874 - microtubule [Evidence IEA]; GO_component: GO:0005815 - microtubule organizing center [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005824 - outer plaque of spindle pole body [Evidence IDA] [PMID 9215630]; GO_component: GO:0000922 - spindle pole [Evidence IEA]; GO_component: GO:0005816 - spindle pole body [Evidence IEA]; GO_function: GO:0005200 - structural constituent of cytoskeleton [Evidence IPI] [PMID 9215630]; GO_process: GO:0000226 - microtubule cytoskeleton organization [Evidence IEA]; GO_process: GO:0007020 - microtubule nucleation [Evidence IEA]; GO_process: GO:0007020 - microtubule nucleation [Evidence IPI] [PMID 9153752]; GO_process: GO:0030472 - mitotic spindle organization in nucleus [Evidence IMP] [PMID 9153752]; Spc98p 5890372 SPC98 30033800 SPC98 Sugiyamaella lignohabitans Spc98p XP_018736121.1 5887886 R 796027 CDS AWJ20_1944 30033801 5891591..5891821 A 1 NC_031672.1 Protein localized to COPII vesicles; proposed to be involved in ER to Golgi transport; interacts with members of the Rab GTPase family and Yip1p; also interacts with Rtn1p; GO_component: GO:0030134 - ER to Golgi transport vesicle [Evidence IDA] [PMID 11157978]; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0005794 - Golgi apparatus [Evidence IDA] [PMID 16002643]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 16002643]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006888 - ER to Golgi vesicle-mediated transport [Evidence IPI] [PMID 11157978]; Yip3p 5891821 YIP3 30033801 YIP3 Sugiyamaella lignohabitans Yip3p XP_018736122.1 5891591 D 796027 CDS AWJ20_1945 30033802 complement(5894409..5896106) A 1 NC_031672.1 potential ankyrin repeats near N terminus similar to S. cerevisiae YCR051W; allele of CaO19.2256; putative ankyrin repeat protein 5896106 YAR1 30033802 YAR1 Sugiyamaella lignohabitans putative ankyrin repeat protein XP_018736123.1 5894409 R 796027 CDS AWJ20_1946 30033803 complement(5896135..5899632) A 1 NC_031672.1 uncharacterized protein 5899632 30033803 AWJ20_1946 Sugiyamaella lignohabitans uncharacterized protein XP_018736124.1 5896135 R 796027 CDS AWJ20_1947 30033804 5903038..5905944 A 1 NC_031672.1 CENP-B protein 2 5905944 cbh2 30033804 cbh2 Sugiyamaella lignohabitans CENP-B protein 2 XP_018736125.1 5903038 D 796027 CDS AWJ20_1948 30033805 5906486..5908069 A 1 NC_031672.1 Threonine deaminase, catalyzes first step in isoleucine biosynthesis; expression is under general amino acid control; ILV1 locus exhibits highly positioned nucleosomes whose organization is independent of known ILV1 regulation; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0004794 - L-threonine ammonia-lyase activity [Evidence IEA,IEA]; GO_function: GO:0004794 - L-threonine ammonia-lyase activity [Evidence IMP] [PMID 5345980]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016829 - lyase activity [Evidence IEA]; GO_function: GO:0030170 - pyridoxal phosphate binding [Evidence IEA]; GO_process: GO:0009082 - branched-chain amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0006520 - cellular amino acid metabolic process [Evidence IEA]; GO_process: GO:0009097 - isoleucine biosynthetic process [Evidence IEA,IEA,IEA]; GO_process: GO:0009097 - isoleucine biosynthetic process [Evidence IMP] [PMID 5345980]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0006567 - threonine catabolic process [Evidence IGI] [PMID 7042346]; threonine ammonia-lyase ILV1 5908069 ILV1 30033805 ILV1 Sugiyamaella lignohabitans threonine ammonia-lyase ILV1 XP_018736126.1 5906486 D 796027 CDS AWJ20_1949 30033806 5908486..5909649 A 1 NC_031672.1 Kynurenine aminotransferase; catalyzes formation of kynurenic acid from kynurenine; potential Cdc28p substrate; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 17034789]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 17034789]; GO_function: GO:0047536 - 2-aminoadipate transaminase activity [Evidence IDA] [PMID 19342587]; GO_function: GO:0004061 - arylformamidase activity [Evidence IDA] [PMID 18205391]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016212 - kynurenine-oxoglutarate transaminase activity [Evidence IEA]; GO_function: GO:0016212 - kynurenine-oxoglutarate transaminase activity [Evidence IDA,ISS] [PMID 18205391]; GO_function: GO:0030170 - pyridoxal phosphate binding [Evidence IEA]; GO_function: GO:0008483 - transaminase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0097053 - L-kynurenine catabolic process [Evidence IEA]; GO_process: GO:0009058 - biosynthetic process [Evidence IEA]; GO_process: GO:0034276 - kynurenic acid biosynthetic process [Evidence IDA,ISS] [PMID 18205391]; Bna3p 5909649 BNA3 30033806 BNA3 Sugiyamaella lignohabitans Bna3p XP_018736127.1 5908486 D 796027 CDS AWJ20_1950 30033808 complement(5909809..5911410) A 1 NC_031672.1 Protein required for assembly of respiratory complex III; mitochondrial inner membrane protein; required for an early step in assembly of respiratory complex III (cytochrome bc1 complex); mRNA is targeted to mitochondria; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0031305 - integral component of mitochondrial inner membrane [Evidence IDA] [PMID 21168530]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0031966 - mitochondrial membrane [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0034551 - mitochondrial respiratory chain complex III assembly [Evidence IMP] [PMID 21168530]; Fmp25p 5911410 FMP25 30033808 FMP25 Sugiyamaella lignohabitans Fmp25p XP_018736128.1 5909809 R 796027 CDS AWJ20_1951 30033809 5911744..5912388 A 1 NC_031672.1 hypothetical protein; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 12514182]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; Fmp32p 5912388 FMP32 30033809 FMP32 Sugiyamaella lignohabitans Fmp32p XP_018736129.1 5911744 D 796027 CDS AWJ20_1952 30033810 complement(5912567..5913337) A 1 NC_031672.1 Phosphomannomutase; involved in synthesis of GDP-mannose and dolichol-phosphate-mannose; required for folding and glycosylation of secretory proteins in the ER lumen; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 3905826]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016853 - isomerase activity [Evidence IEA]; GO_function: GO:0004615 - phosphomannomutase activity [Evidence IEA,IEA]; GO_function: GO:0004615 - phosphomannomutase activity [Evidence IDA] [PMID 3288631]; GO_process: GO:0009298 - GDP-mannose biosynthetic process [Evidence IEA]; GO_process: GO:0019307 - mannose biosynthetic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0045047 - protein targeting to ER [Evidence IMP] [PMID 6368572]; phosphomannomutase SEC53 5913337 SEC53 30033810 SEC53 Sugiyamaella lignohabitans phosphomannomutase SEC53 XP_018736130.1 5912567 R 796027 CDS AWJ20_1953 30033811 5915103..5915543 A 1 NC_031672.1 uncharacterized protein 5915543 30033811 AWJ20_1953 Sugiyamaella lignohabitans uncharacterized protein XP_018736131.1 5915103 D 796027 CDS AWJ20_1954 30033812 complement(5915121..5915399) A 1 NC_031672.1 Protein component of the small (40S) ribosomal subunit; required for ribosome assembly and 20S pre-rRNA processing; mutations confer cryptopleurine resistance; homologous to mammalian ribosomal protein S14 and bacterial S11; RPS14A has a paralog, RPS14B, that arose from the whole genome duplication; GO_component: GO:0030686 - 90S preribosome [Evidence IDA] [PMID 12150911]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0022627 - cytosolic small ribosomal subunit [Evidence NAS] [PMID 9559554]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA,IEA]; GO_component: GO:0032040 - small-subunit processome [Evidence IDA] [PMID 15590835]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 9858605]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence NAS] [PMID 9559554]; GO_process: GO:0002181 - cytoplasmic translation [Evidence NAS] [PMID 9559554]; GO_process: GO:0000462 - maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 15125836]; GO_process: GO:0000462 - maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IGI] [PMID 16246728]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0000028 - ribosomal small subunit assembly [Evidence IMP] [PMID 2277060]; GO_process: GO:0000028 - ribosomal small subunit assembly [Evidence IMP] [PMID 8293976]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; GO_process: GO:0006412 - translation [Evidence IEA]; ribosomal 40S subunit protein S14A 5915399 RPS14A 30033812 RPS14A Sugiyamaella lignohabitans ribosomal 40S subunit protein S14A XP_018736132.1 5915121 R 796027 CDS AWJ20_1955 30033813 5916765..5917469 A 1 NC_031672.1 uncharacterized protein 5917469 30033813 AWJ20_1955 Sugiyamaella lignohabitans uncharacterized protein XP_018736133.1 5916765 D 796027 CDS AWJ20_1956 30033814 5917643..5918146 A 1 NC_031672.1 uncharacterized protein 5918146 30033814 AWJ20_1956 Sugiyamaella lignohabitans uncharacterized protein XP_018736134.1 5917643 D 796027 CDS AWJ20_1957 30033815 complement(5918220..5919467) A 1 NC_031672.1 Beta-isopropylmalate dehydrogenase (IMDH); catalyzes the third step in the leucine biosynthesis pathway; can additionally catalyze the conversion of beta-ethylmalate into alpha-ketovalerate; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 4355481]; GO_function: GO:0003862 - 3-isopropylmalate dehydrogenase activity [Evidence IEA,IEA]; GO_function: GO:0003862 - 3-isopropylmalate dehydrogenase activity [Evidence IDA] [PMID 3071718]; GO_function: GO:0003862 - 3-isopropylmalate dehydrogenase activity [Evidence IMP] [PMID 6297759]; GO_function: GO:0051287 - NAD binding [Evidence IEA]; GO_function: GO:0000287 - magnesium ion binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor [Evidence IEA]; GO_process: GO:0009082 - branched-chain amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0006097 - glyoxylate cycle [Evidence IMP] [PMID 23642236]; GO_process: GO:0009098 - leucine biosynthetic process [Evidence IEA,IEA,IEA]; GO_process: GO:0009098 - leucine biosynthetic process [Evidence IMP] [PMID 6297759]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; 3-isopropylmalate dehydrogenase 5919467 LEU2 30033815 LEU2 Sugiyamaella lignohabitans 3-isopropylmalate dehydrogenase XP_018736135.1 5918220 R 796027 CDS AWJ20_1958 30033816 5919652..5920410 A 1 NC_031672.1 Peroxisomal 2,4-dienoyl-CoA reductase; auxiliary enzyme of fatty acid beta-oxidation; homodimeric enzyme required for growth and sporulation on petroselineate medium; expression induced during late sporulation and in the presence of oleate; GO_component: GO:0005782 - peroxisomal matrix [Evidence IDA] [PMID 9268358]; GO_component: GO:0005777 - peroxisome [Evidence IEA,IEA]; GO_function: GO:0008670 - 2,4-dienoyl-CoA reductase (NADPH) activity [Evidence IEA]; GO_function: GO:0008670 - 2,4-dienoyl-CoA reductase (NADPH) activity [Evidence IDA,ISS] [PMID 9268358]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_process: GO:0030437 - ascospore formation [Evidence IEP,IMP] [PMID 7969036]; GO_process: GO:0009062 - fatty acid catabolic process [Evidence IDA,ISS] [PMID 9268358]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; GO_process: GO:0030435 - sporulation resulting in formation of a cellular spore [Evidence IEA]; Sps19p 5920410 SPS19 30033816 SPS19 Sugiyamaella lignohabitans Sps19p XP_018736136.1 5919652 D 796027 CDS AWJ20_1959 30033817 5921462..5922946 A 1 NC_031672.1 uncharacterized protein 5922946 30033817 AWJ20_1959 Sugiyamaella lignohabitans uncharacterized protein XP_018736137.1 5921462 D 796027 CDS AWJ20_1960 30033819 complement(5923161..5924558) A 1 NC_031672.1 Mitochondrial aminopeptidase; cleaves the N termini of at least 38 imported proteins after cleavage by the mitochondrial processing peptidase (MPP), thereby increasing their stability; member of the aminopeptidase P family; GO_component: GO:0031314 - extrinsic component of mitochondrial inner membrane [Evidence IDA] [PMID 19837041]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 19720832]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 19720832]; GO_function: GO:0004177 - aminopeptidase activity [Evidence IEA,IEA]; GO_function: GO:0004177 - aminopeptidase activity [Evidence IDA,IMP] [PMID 19720832]; GO_function: GO:0004177 - aminopeptidase activity [Evidence IMP] [PMID 19837041]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0030145 - manganese ion binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0008237 - metallopeptidase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_process: GO:0016485 - protein processing [Evidence IMP] [PMID 19720832]; GO_process: GO:0016485 - protein processing [Evidence IGI,IMP] [PMID 19837041]; GO_process: GO:0050821 - protein stabilization [Evidence IMP] [PMID 19837041]; GO_process: GO:0006508 - proteolysis [Evidence IEA]; Icp55p 5924558 ICP55 30033819 ICP55 Sugiyamaella lignohabitans Icp55p XP_018736138.1 5923161 R 796027 CDS AWJ20_1961 30033820 5926676..5928196 A 1 NC_031672.1 Purine-cytosine permease; mediates purine (adenine, guanine, and hypoxanthine) and cytosine accumulation; relative distribution to the vacuole increases upon DNA replication stress; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 22842922]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 22842922]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 8267570]; GO_function: GO:0015212 - cytidine transmembrane transporter activity [Evidence IDA,IMP] [PMID 10501935]; GO_function: GO:0015205 - nucleobase transmembrane transporter activity [Evidence IEA]; GO_function: GO:0015205 - nucleobase transmembrane transporter activity [Evidence IDA] [PMID 9092500]; GO_function: GO:0005215 - transporter activity [Evidence IEA]; GO_process: GO:0015861 - cytidine transport [Evidence IDA,IMP] [PMID 10501935]; GO_process: GO:0015856 - cytosine transport [Evidence IDA] [PMID 9092500]; GO_process: GO:0015851 - nucleobase transport [Evidence IEA]; GO_process: GO:0072530 - purine-containing compound transmembrane transport [Evidence IDA] [PMID 9092500]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; Fcy2p 5928196 FCY2 30033820 FCY2 Sugiyamaella lignohabitans Fcy2p XP_018736139.1 5926676 D 796027 CDS AWJ20_1962 30033821 2139..2819 B 1 NC_031674.1 guanine nucleotide exchange factor SDO1 2819 SDO1 30033821 SDO1 Sugiyamaella lignohabitans guanine nucleotide exchange factor SDO1 XP_018736851.1 2139 D 796027 CDS AWJ20_1963 30033822 complement(2859..3389) B 1 NC_031674.1 uncharacterized protein 3389 30033822 AWJ20_1963 Sugiyamaella lignohabitans uncharacterized protein XP_018736852.1 2859 R 796027 CDS AWJ20_1964 30033823 complement(4700..5089) B 1 NC_031674.1 uncharacterized protein 5089 30033823 AWJ20_1964 Sugiyamaella lignohabitans uncharacterized protein XP_018736853.1 4700 R 796027 CDS AWJ20_1965 30033824 complement(5690..9004) B 1 NC_031674.1 Phosphatidylinositol-4-phosphate 5-kinase; involved in actin cytoskeleton organization and cell morphogenesis; multicopy suppressor of stt4 mutation; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9624177]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 9624177]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IEA]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IDA] [PMID 9624177]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IDA] [PMID 9624178]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016307 - phosphatidylinositol phosphate kinase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0031321 - ascospore-type prospore assembly [Evidence IGI] [PMID 19502581]; GO_process: GO:0046488 - phosphatidylinositol metabolic process [Evidence IEA]; GO_process: GO:0046854 - phosphatidylinositol phosphorylation [Evidence IDA] [PMID 9624177]; GO_process: GO:0046854 - phosphatidylinositol phosphorylation [Evidence IDA] [PMID 9624178]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; 1-phosphatidylinositol-4-phosphate 5-kinase 9004 MSS4 30033824 MSS4 Sugiyamaella lignohabitans 1-phosphatidylinositol-4-phosphate 5-kinase XP_018736854.1 5690 R 796027 CDS AWJ20_1966 30033825 complement(11084..13663) B 1 NC_031674.1 uncharacterized protein 13663 30033825 AWJ20_1966 Sugiyamaella lignohabitans uncharacterized protein XP_018736855.1 11084 R 796027 CDS AWJ20_1967 30033826 15080..16726 B 1 NC_031674.1 uncharacterized protein 16726 30033826 AWJ20_1967 Sugiyamaella lignohabitans uncharacterized protein XP_018736856.1 15080 D 796027 CDS AWJ20_1968 30033827 19208..20860 B 1 NC_031674.1 RNA binding protein, component of the U1 snRNP protein; mutants are defective in meiotic recombination and in formation of viable spores, involved in the formation of DSBs through meiosis-specific splicing of REC107 pre-mRNA; Nam8p regulon embraces the meiotic pre-mRNAs of REC107, HFM1, AMA1 SPO22 and PCH2; the putative RNA binding domains RRM2 and RRM3 are required for Nam8p meiotic function; GO_component: GO:0005685 - U1 snRNP [Evidence IDA] [PMID 9630245]; GO_component: GO:0071004 - U2-type prespliceosome [Evidence IDA] [PMID 16618970]; GO_component: GO:0000243 - commitment complex [Evidence IPI] [PMID 10072386]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 23222640]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 23222640]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IPI] [PMID 10072385]; GO_function: GO:0003729 - mRNA binding [Evidence IPI] [PMID 10072386]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0006376 - mRNA splice site selection [Evidence IMP] [PMID 10072385]; GO_process: GO:0000398 - mRNA splicing, via spliceosome [Evidence IPI] [PMID 10072386]; GO_process: GO:0048026 - positive regulation of mRNA splicing, via spliceosome [Evidence IMP] [PMID 10983980]; Nam8p 20860 NAM8 30033827 NAM8 Sugiyamaella lignohabitans Nam8p XP_018736857.1 19208 D 796027 CDS AWJ20_1969 30033828 23364..27506 B 1 NC_031674.1 chromatin-remodeling protein SWR1 27506 SWR1 30033828 SWR1 Sugiyamaella lignohabitans chromatin-remodeling protein SWR1 XP_018736858.1 23364 D 796027 CDS AWJ20_1970 30033830 31192..33165 B 1 NC_031674.1 High-affinity cyclic AMP phosphodiesterase; component of the cAMP-dependent protein kinase signaling system, protects the cell from extracellular cAMP, contains readthrough motif surrounding termination codon; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0004115 - 3',5'-cyclic-AMP phosphodiesterase activity [Evidence IDA] [PMID 3025832]; GO_function: GO:0004114 - 3',5'-cyclic-nucleotide phosphodiesterase activity [Evidence IEA,IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0008081 - phosphoric diester hydrolase activity [Evidence IEA]; GO_process: GO:0019933 - cAMP-mediated signaling [Evidence IMP] [PMID 8391474]; GO_process: GO:0008152 - metabolic process [Evidence IEA,IEA,IEA]; GO_process: GO:0007165 - signal transduction [Evidence IEA]; 3',5'-cyclic-nucleotide phosphodiesterase PDE2 33165 PDE2 30033830 PDE2 Sugiyamaella lignohabitans 3',5'-cyclic-nucleotide phosphodiesterase PDE2 XP_018736859.1 31192 D 796027 CDS AWJ20_1971 30033831 complement(33355..35247) B 1 NC_031674.1 Flap-structured DNA-binding and RNA-binding protein; stimulates deadenylation-dependent mRNA degradation mediated by the CCR4-NOT deadenylase complex; member of the Smaug (Smg) family of post-transcriptional regulators which bind RNA through a conserved sterile alpha motif (SAM) domain that interacts with Smg recognition element (SREs) containing transcripts; stimulates Dna2p endonuclease activity; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0000932 - cytoplasmic mRNA processing body [Evidence IDA] [PMID 18469165]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 11445562]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 20007605]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IDA] [PMID 12858164]; GO_function: GO:0003723 - RNA binding [Evidence IDA] [PMID 16429156]; GO_function: GO:0070336 - flap-structured DNA binding [Evidence IDA] [PMID 20007605]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0000956 - nuclear-transcribed mRNA catabolic process [Evidence IMP] [PMID 12858164]; GO_process: GO:0000956 - nuclear-transcribed mRNA catabolic process [Evidence IMP] [PMID 16429156]; GO_process: GO:0000289 - nuclear-transcribed mRNA poly(A) tail shortening [Evidence IMP,IPI] [PMID 18469165]; GO_process: GO:0032079 - positive regulation of endodeoxyribonuclease activity [Evidence IDA,IPI] [PMID 20007605]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Vts1p 35247 VTS1 30033831 VTS1 Sugiyamaella lignohabitans Vts1p XP_018736860.1 33355 R 796027 CDS AWJ20_1972 30033832 complement(37188..37670) B 1 NC_031674.1 Histone chaperone; involved in regulation of chromatin structure in both transcribed and silenced chromosomal regions; affects transcriptional elongation; has a role in regulation of Ty1 transposition; interacts physically and functionally with Chromatin Assembly Factor-1 (CAF-1); GO_component: GO:0005694 - chromosome [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0003690 - double-stranded DNA binding [Evidence IDA,IMP] [PMID 20007951]; GO_function: GO:0042393 - histone binding [Evidence IDA,IPI] [PMID 16157874]; GO_function: GO:0042393 - histone binding [Evidence IDA] [PMID 18662540]; GO_function: GO:0042393 - histone binding [Evidence IDA,IMP] [PMID 20007951]; GO_process: GO:0006335 - DNA replication-dependent nucleosome assembly [Evidence IGI] [PMID 18662540]; GO_process: GO:0006336 - DNA replication-independent nucleosome assembly [Evidence IMP] [PMID 18708354]; GO_process: GO:0070869 - heterochromatin assembly involved in chromatin silencing [Evidence IGI,IMP] [PMID 17410207]; GO_process: GO:0070869 - heterochromatin assembly involved in chromatin silencing [Evidence IGI] [PMID 20007951]; GO_process: GO:0000122 - negative regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 19683497]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006368 - transcription elongation from RNA polymerase II promoter [Evidence IGI,IMP] [PMID 18708354]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; GO_process: GO:0032196 - transposition [Evidence IEA]; Rtt106p 37670 RTT106 30033832 RTT106 Sugiyamaella lignohabitans Rtt106p XP_018736861.1 37188 R 796027 CDS AWJ20_1973 30033833 complement(41941..42411) B 1 NC_031674.1 Type 1 serine/threonine protein phosphatase catalytic subunit; cleavage and polyadenylation factor (CPF) component; involved in various processes including glycogen metabolism, sporulation, mitosis; accumulates at mating projections by interaction with Afr1p; interacts with many regulatory subunits; involved in regulation of the nucleocytoplasmic shuttling of Hxk2p; import into nucleus is inhibited during spindle assembly checkpoint arrest; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 11412094]; GO_component: GO:0000778 - condensed nuclear chromosome kinetochore [Evidence IDA] [PMID 19948764]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005847 - mRNA cleavage and polyadenylation specificity factor complex [Evidence IDA] [PMID 12819204]; GO_component: GO:0001400 - mating projection base [Evidence IDA] [PMID 10747092]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 11412094]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 23418575]; GO_component: GO:0000164 - protein phosphatase type 1 complex [Evidence IDA] [PMID 8289829]; GO_component: GO:0005816 - spindle pole body [Evidence IDA] [PMID 10747092]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA,IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004721 - phosphoprotein phosphatase activity [Evidence IEA,IEA]; GO_function: GO:0004722 - protein serine/threonine phosphatase activity [Evidence IDA] [PMID 1660885]; GO_process: GO:0000077 - DNA damage checkpoint [Evidence IMP] [PMID 19884341]; GO_process: GO:0000076 - DNA replication checkpoint [Evidence IGI,IMP] [PMID 19884341]; GO_process: GO:0030437 - ascospore formation [Evidence IMP] [PMID 9584086]; GO_process: GO:0005975 - carbohydrate metabolic process [Evidence IEA]; GO_process: GO:0007114 - cell budding [Evidence IMP] [PMID 10639337]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0006873 - cellular ion homeostasis [Evidence IMP] [PMID 11973298]; GO_process: GO:0007059 - chromosome segregation [Evidence IMP] [PMID 10072383]; GO_process: GO:0070940 - dephosphorylation of RNA polymerase II C-terminal domain [Evidence IDA] [PMID 24413056]; GO_process: GO:0005977 - glycogen metabolic process [Evidence IEA]; GO_process: GO:0005977 - glycogen metabolic process [Evidence IMP] [PMID 1660885]; GO_process: GO:0016576 - histone dephosphorylation [Evidence IMP] [PMID 10975519]; GO_process: GO:0016576 - histone dephosphorylation [Evidence IDA,IMP] [PMID 19884341]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0007126 - meiotic nuclear division [Evidence IPI] [PMID 8754819]; GO_process: GO:0007067 - mitotic nuclear division [Evidence IEA]; GO_process: GO:0007094 - mitotic spindle assembly checkpoint [Evidence IMP] [PMID 10072380]; GO_process: GO:0035307 - positive regulation of protein dephosphorylation [Evidence IMP] [PMID 23418575]; GO_process: GO:0006470 - protein dephosphorylation [Evidence IDA] [PMID 1660885]; GO_process: GO:0034501 - protein localization to kinetochore [Evidence IMP] [PMID 19948764]; GO_process: GO:0006364 - rRNA processing [Evidence IMP] [PMID 12837249]; GO_process: GO:0006109 - regulation of carbohydrate metabolic process [Evidence IGI,IPI] [PMID 12167649]; GO_process: GO:0051726 - regulation of cell cycle [Evidence IMP] [PMID 10072380]; GO_process: GO:0051726 - regulation of cell cycle [Evidence IMP] [PMID 7891699]; GO_process: GO:0051726 - regulation of cell cycle [Evidence IMP] [PMID 8164671]; GO_process: GO:0051726 - regulation of cell cycle [Evidence IMP] [PMID 9584086]; GO_process: GO:0000903 - regulation of cell shape during vegetative growth phase [Evidence IGI] [PMID 12477789]; GO_process: GO:0007346 - regulation of mitotic cell cycle [Evidence IMP] [PMID 23418575]; GO_process: GO:0031297 - replication fork processing [Evidence IMP] [PMID 19884341]; GO_process: GO:0009408 - response to heat [Evidence IMP,IPI] [PMID 10207049]; GO_process: GO:0030847 - termination of RNA polymerase II transcription, exosome-dependent [Evidence IPI] [PMID 12819204]; GO_process: GO:0030846 - termination of RNA polymerase II transcription, poly(A)-coupled [Evidence IPI] [PMID 12819204]; GO_process: GO:0061587 - transfer RNA gene-mediated silencing [Evidence IMP] [PMID 23707796]; type 1 serine/threonine-protein phosphatase catalytic subunit GLC7 42411 GLC7 30033833 GLC7 Sugiyamaella lignohabitans type 1 serine/threonine-protein phosphatase catalytic subunit GLC7 XP_018736862.1 41941 R 796027 CDS AWJ20_1974 30033834 complement(44647..45621) B 1 NC_031674.1 Type 1 serine/threonine protein phosphatase catalytic subunit; cleavage and polyadenylation factor (CPF) component; involved in various processes including glycogen metabolism, sporulation, mitosis; accumulates at mating projections by interaction with Afr1p; interacts with many regulatory subunits; involved in regulation of the nucleocytoplasmic shuttling of Hxk2p; import into nucleus is inhibited during spindle assembly checkpoint arrest; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 11412094]; GO_component: GO:0000778 - condensed nuclear chromosome kinetochore [Evidence IDA] [PMID 19948764]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005847 - mRNA cleavage and polyadenylation specificity factor complex [Evidence IDA] [PMID 12819204]; GO_component: GO:0001400 - mating projection base [Evidence IDA] [PMID 10747092]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 11412094]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 23418575]; GO_component: GO:0000164 - protein phosphatase type 1 complex [Evidence IDA] [PMID 8289829]; GO_component: GO:0005816 - spindle pole body [Evidence IDA] [PMID 10747092]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA,IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004721 - phosphoprotein phosphatase activity [Evidence IEA,IEA]; GO_function: GO:0004722 - protein serine/threonine phosphatase activity [Evidence IDA] [PMID 1660885]; GO_process: GO:0000077 - DNA damage checkpoint [Evidence IMP] [PMID 19884341]; GO_process: GO:0000076 - DNA replication checkpoint [Evidence IGI,IMP] [PMID 19884341]; GO_process: GO:0030437 - ascospore formation [Evidence IMP] [PMID 9584086]; GO_process: GO:0005975 - carbohydrate metabolic process [Evidence IEA]; GO_process: GO:0007114 - cell budding [Evidence IMP] [PMID 10639337]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0006873 - cellular ion homeostasis [Evidence IMP] [PMID 11973298]; GO_process: GO:0007059 - chromosome segregation [Evidence IMP] [PMID 10072383]; GO_process: GO:0070940 - dephosphorylation of RNA polymerase II C-terminal domain [Evidence IDA] [PMID 24413056]; GO_process: GO:0005977 - glycogen metabolic process [Evidence IEA]; GO_process: GO:0005977 - glycogen metabolic process [Evidence IMP] [PMID 1660885]; GO_process: GO:0016576 - histone dephosphorylation [Evidence IMP] [PMID 10975519]; GO_process: GO:0016576 - histone dephosphorylation [Evidence IDA,IMP] [PMID 19884341]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0007126 - meiotic nuclear division [Evidence IPI] [PMID 8754819]; GO_process: GO:0007067 - mitotic nuclear division [Evidence IEA]; GO_process: GO:0007094 - mitotic spindle assembly checkpoint [Evidence IMP] [PMID 10072380]; GO_process: GO:0035307 - positive regulation of protein dephosphorylation [Evidence IMP] [PMID 23418575]; GO_process: GO:0006470 - protein dephosphorylation [Evidence IDA] [PMID 1660885]; GO_process: GO:0034501 - protein localization to kinetochore [Evidence IMP] [PMID 19948764]; GO_process: GO:0006364 - rRNA processing [Evidence IMP] [PMID 12837249]; GO_process: GO:0006109 - regulation of carbohydrate metabolic process [Evidence IGI,IPI] [PMID 12167649]; GO_process: GO:0051726 - regulation of cell cycle [Evidence IMP] [PMID 10072380]; GO_process: GO:0051726 - regulation of cell cycle [Evidence IMP] [PMID 7891699]; GO_process: GO:0051726 - regulation of cell cycle [Evidence IMP] [PMID 8164671]; GO_process: GO:0051726 - regulation of cell cycle [Evidence IMP] [PMID 9584086]; GO_process: GO:0000903 - regulation of cell shape during vegetative growth phase [Evidence IGI] [PMID 12477789]; GO_process: GO:0007346 - regulation of mitotic cell cycle [Evidence IMP] [PMID 23418575]; GO_process: GO:0031297 - replication fork processing [Evidence IMP] [PMID 19884341]; GO_process: GO:0009408 - response to heat [Evidence IMP,IPI] [PMID 10207049]; GO_process: GO:0030847 - termination of RNA polymerase II transcription, exosome-dependent [Evidence IPI] [PMID 12819204]; GO_process: GO:0030846 - termination of RNA polymerase II transcription, poly(A)-coupled [Evidence IPI] [PMID 12819204]; GO_process: GO:0061587 - transfer RNA gene-mediated silencing [Evidence IMP] [PMID 23707796]; type 1 serine/threonine-protein phosphatase catalytic subunit GLC7 45621 GLC7 30033834 GLC7 Sugiyamaella lignohabitans type 1 serine/threonine-protein phosphatase catalytic subunit GLC7 XP_018736863.1 44647 R 796027 CDS AWJ20_1975 30033835 complement(46504..48150) B 1 NC_031674.1 Transcriptional activator; required for the vitamin H-responsive element (VHRE) mediated induction of VHT1 (Vitamin H transporter) and BIO5 (biotin biosynthesis intermediate transporter) in response to low biotin concentrations; VHR1 has a paralog, VHR2, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 16533810]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0000977 - RNA polymerase II regulatory region sequence-specific DNA binding [Evidence IDA] [PMID 16533810]; GO_function: GO:0001133 - sequence-specific transcription regulatory region DNA binding RNA polymerase II transcription factor recruiting transcription factor activity [Evidence IDA,IMP] [PMID 21278159]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 16533810]; GO_process: GO:0061420 - regulation of transcription from RNA polymerase II promoter in response to biotin starvation [Evidence IMP] [PMID 16533810]; GO_process: GO:0061420 - regulation of transcription from RNA polymerase II promoter in response to biotin starvation [Evidence IMP] [PMID 21278159]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Vhr1p 48150 VHR1 30033835 VHR1 Sugiyamaella lignohabitans Vhr1p XP_018736864.1 46504 R 796027 CDS AWJ20_1976 30033836 49106..50077 B 1 NC_031674.1 Protein proposed to be involved in vacuolar functions; mutant shows defect in CPY processing and defects in vacuolar morphology; has similarity to oxidoreductases, found in lipid particles; required for replication of Brome mosaic virus in S. cerevisiae, a model system for studying replication of positive-strand RNA viruses in their natural hosts; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0005811 - lipid particle [Evidence IEA,IEA]; GO_component: GO:0005811 - lipid particle [Evidence IDA] [PMID 14562095]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence ISS] [PMID 8972580]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; GO_process: GO:0006624 - vacuolar protein processing [Evidence IMP] [PMID 21912603]; GO_process: GO:0007033 - vacuole organization [Evidence IMP] [PMID 21912603]; Env9p 50077 ENV9 30033836 ENV9 Sugiyamaella lignohabitans Env9p XP_018736865.1 49106 D 796027 CDS AWJ20_1977 30033837 51489..53402 B 1 NC_031674.1 Deletion suppressor of mpt5 mutation; relocalizes from bud neck to cytoplasm upon DNA replication stress; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 22842922]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; Dsf2p 53402 DSF2 30033837 DSF2 Sugiyamaella lignohabitans Dsf2p XP_018736866.1 51489 D 796027 CDS AWJ20_1978 30033838 complement(53723..53989) B 1 NC_031674.1 Protein required for assembly of the cytochrome bc(1) complex; acts as a chaperone for Rip1p and facilitates its insertion into the complex at a late stage of assembly; localized to the mitochondrial matrix; null mutant exhibits a respiratory growth defect and reduced mitochondrial zinc levels, which is characteristic of mutations affecting bc(1) complex assembly; member of the LYR protein family; human LYRM7 is a functional ortholog; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA]; GO_component: GO:0005759 - mitochondrial matrix [Evidence IDA] [PMID 20404342]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 17054397]; GO_function: GO:0044183 - protein binding involved in protein folding [Evidence IMP,IPI] [PMID 22927643]; GO_process: GO:0034551 - mitochondrial respiratory chain complex III assembly [Evidence IMP] [PMID 21807901]; Mzm1p 53989 MZM1 30033838 MZM1 Sugiyamaella lignohabitans Mzm1p XP_018736867.1 53723 R 796027 CDS AWJ20_1979 30033839 54568..56172 B 1 NC_031674.1 uncharacterized protein 56172 30033839 AWJ20_1979 Sugiyamaella lignohabitans uncharacterized protein XP_018736868.1 54568 D 796027 CDS AWJ20_1980 30033841 complement(57205..59694) B 1 NC_031674.1 Mitochondrial elongation factor involved in translational elongation; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0005525 - GTP binding [Evidence IEA,IEA]; GO_function: GO:0003924 - GTPase activity [Evidence IEA]; GO_function: GO:0003924 - GTPase activity [Evidence ISS] [PMID 19716793]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006184 - GTP catabolic process [Evidence IEA]; GO_process: GO:0000002 - mitochondrial genome maintenance [Evidence IMP] [PMID 21414316]; GO_process: GO:0032543 - mitochondrial translation [Evidence ISS] [PMID 19716793]; GO_process: GO:0051881 - regulation of mitochondrial membrane potential [Evidence IMP] [PMID 21414316]; GO_process: GO:0032790 - ribosome disassembly [Evidence ISS] [PMID 19716793]; GO_process: GO:0006412 - translation [Evidence IEA]; Mef2p 59694 MEF2 30033841 MEF2 Sugiyamaella lignohabitans Mef2p XP_018736869.1 57205 R 796027 CDS AWJ20_1981 30033842 60189..61094 B 1 NC_031674.1 pre-mRNA splicing factor SLU7 61094 30033842 AWJ20_1981 Sugiyamaella lignohabitans pre-mRNA splicing factor SLU7 XP_018736870.1 60189 D 796027 CDS AWJ20_1982 30033843 63464..65449 B 1 NC_031674.1 uncharacterized protein 65449 30033843 AWJ20_1982 Sugiyamaella lignohabitans uncharacterized protein XP_018736871.1 63464 D 796027 CDS AWJ20_1983 30033844 complement(65534..66802) B 1 NC_031674.1 Actin-related protein that binds nucleosomes; a component of the SWR1 complex, which exchanges histone variant H2AZ (Htz1p) for chromatin-bound histone H2A; GO_component: GO:0000812 - Swr1 complex [Evidence IDA] [PMID 14645854]; GO_component: GO:0000812 - Swr1 complex [Evidence IDA] [PMID 14690608]; GO_component: GO:0000812 - Swr1 complex [Evidence IDA] [PMID 16299513]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11011149]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0031491 - nucleosome binding [Evidence IMP] [PMID 16299513]; GO_process: GO:0016568 - chromatin modification [Evidence IEA]; GO_process: GO:0006338 - chromatin remodeling [Evidence IDA] [PMID 14645854]; GO_process: GO:0006338 - chromatin remodeling [Evidence IGI,IMP] [PMID 14690608]; GO_process: GO:0043486 - histone exchange [Evidence IMP] [PMID 16299513]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Arp6p 66802 ARP6 30033844 ARP6 Sugiyamaella lignohabitans Arp6p XP_018736872.1 65534 R 796027 CDS AWJ20_1984 30033845 67251..68048 B 1 NC_031674.1 uncharacterized protein 68048 30033845 AWJ20_1984 Sugiyamaella lignohabitans uncharacterized protein XP_018736873.1 67251 D 796027 CDS AWJ20_1985 30033846 68086..71694 B 1 NC_031674.1 Subunit of the condensin complex; condensin reorganizes chromosomes during both mitosis and meiosis; forms a subcomplex with Smc2p that has ATP-hydrolyzing and DNA-binding activity, but other condensin subunits are required for chromatin binding; required for tRNA gene clustering at the nucleolus; potential Cdc28p substrate; GO_component: GO:0005694 - chromosome [Evidence IEA,IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0000799 - nuclear condensin complex [Evidence IDA] [PMID 10811823]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016887 - ATPase activity [Evidence IDA] [PMID 12719426]; GO_function: GO:0003682 - chromatin binding [Evidence IDA] [PMID 11864994]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006310 - DNA recombination [Evidence IEA]; GO_process: GO:0006281 - DNA repair [Evidence IEA]; GO_process: GO:0006268 - DNA unwinding involved in DNA replication [Evidence IMP] [PMID 24062159]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0030261 - chromosome condensation [Evidence IEA]; GO_process: GO:0051276 - chromosome organization [Evidence IEA]; GO_process: GO:0010032 - meiotic chromosome condensation [Evidence IC] [PMID 10811823]; GO_process: GO:0051307 - meiotic chromosome separation [Evidence IC] [PMID 10811823]; GO_process: GO:0007076 - mitotic chromosome condensation [Evidence IMP] [PMID 10811823]; GO_process: GO:0007067 - mitotic nuclear division [Evidence IEA]; GO_process: GO:0000070 - mitotic sister chromatid segregation [Evidence IMP] [PMID 10811823]; GO_process: GO:0070550 - rDNA condensation [Evidence IMP] [PMID 10811823]; GO_process: GO:0007130 - synaptonemal complex assembly [Evidence IC] [PMID 10811823]; GO_process: GO:0070058 - tRNA gene clustering [Evidence IMP] [PMID 18708579]; condensin subunit SMC4 71694 SMC4 30033846 SMC4 Sugiyamaella lignohabitans condensin subunit SMC4 XP_018736874.1 68086 D 796027 CDS AWJ20_1986 30033847 complement(71831..72745) B 1 NC_031674.1 2-hexaprenyl-6-methoxy-1,4-benzoquinone methyltransferase; involved in ubiquinone (Coenzyme Q) biosynthesis; localizes to the matrix face of the mitochondrial inner membrane in a large complex with other ubiquinone biosynthetic enzymes; GO_component: GO:0005759 - mitochondrial matrix [Evidence IDA] [PMID 9083048]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0043334 - 2-hexaprenyl-6-methoxy-1,4-benzoquinone methyltransferase activity [Evidence IMP,ISS] [PMID 9083049]; GO_function: GO:0008168 - methyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0009060 - aerobic respiration [Evidence IMP] [PMID 9083049]; GO_process: GO:0032259 - methylation [Evidence IEA]; GO_process: GO:0006744 - ubiquinone biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0006744 - ubiquinone biosynthetic process [Evidence IMP] [PMID 9083048]; 2-hexaprenyl-6-methoxy-1,4-benzoquinone methyltransferase 72745 COQ5 30033847 COQ5 Sugiyamaella lignohabitans 2-hexaprenyl-6-methoxy-1,4-benzoquinone methyltransferase XP_018736875.1 71831 R 796027 CDS AWJ20_1987 30033848 73476..73982 B 1 NC_031674.1 uncharacterized protein 73982 30033848 AWJ20_1987 Sugiyamaella lignohabitans uncharacterized protein XP_018736876.1 73476 D 796027 CDS AWJ20_1988 30033849 74203..75435 B 1 NC_031674.1 uncharacterized protein 75435 30033849 AWJ20_1988 Sugiyamaella lignohabitans uncharacterized protein XP_018736877.1 74203 D 796027 CDS AWJ20_1989 30033850 complement(75545..77095) B 1 NC_031674.1 DNA replication protein Dre4 77095 30033850 AWJ20_1989 Sugiyamaella lignohabitans DNA replication protein Dre4 XP_018736878.1 75545 R 796027 CDS AWJ20_1990 30033852 77713..78273 B 1 NC_031674.1 Alpha 3 subunit of the 20S proteasome; the only nonessential 20S subunit; may be replaced by the alpha 4 subunit (Pre6p) under stress conditions to create a more active proteasomal isoform; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0042175 - nuclear outer membrane-endoplasmic reticulum membrane network [Evidence IC] [PMID 9087403]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IC] [PMID 9087403]; GO_component: GO:0000502 - proteasome complex [Evidence IEA]; GO_component: GO:0005839 - proteasome core complex [Evidence IEA]; GO_component: GO:0019773 - proteasome core complex, alpha-subunit complex [Evidence IEA]; GO_component: GO:0019773 - proteasome core complex, alpha-subunit complex [Evidence IDA] [PMID 9087403]; GO_component: GO:0034515 - proteasome storage granule [Evidence IDA] [PMID 18504300]; GO_function: GO:0004175 - endopeptidase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_function: GO:0004298 - threonine-type endopeptidase activity [Evidence IEA,IEA]; GO_process: GO:0010499 - proteasomal ubiquitin-independent protein catabolic process [Evidence IDA] [PMID 19162040]; GO_process: GO:0080129 - proteasome core complex assembly [Evidence IMP] [PMID 14739934]; GO_process: GO:0043161 - proteasome-mediated ubiquitin-dependent protein catabolic process [Evidence IDA] [PMID 11545745]; GO_process: GO:0043161 - proteasome-mediated ubiquitin-dependent protein catabolic process [Evidence IDA] [PMID 19029916]; GO_process: GO:0006508 - proteolysis [Evidence IEA]; GO_process: GO:0051603 - proteolysis involved in cellular protein catabolic process [Evidence IEA]; GO_process: GO:0006511 - ubiquitin-dependent protein catabolic process [Evidence IEA]; proteasome core particle subunit alpha 3 78273 PRE9 30033852 PRE9 Sugiyamaella lignohabitans proteasome core particle subunit alpha 3 XP_018736879.1 77713 D 796027 CDS AWJ20_1991 30033853 complement(78447..79427) B 1 NC_031674.1 uncharacterized protein 79427 30033853 AWJ20_1991 Sugiyamaella lignohabitans uncharacterized protein XP_018736880.1 78447 R 796027 CDS AWJ20_1992 30033854 complement(80095..87144) B 1 NC_031674.1 Component of the RAM signaling network; is involved in regulation of Ace2p activity and cellular morphogenesis, interacts with protein kinase Cbk1p and also with Kic1p; GO_component: GO:0005933 - cellular bud [Evidence IDA] [PMID 12972564]; GO_component: GO:0000131 - incipient cellular bud site [Evidence IDA] [PMID 11854408]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 12972564]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0007118 - budding cell apical bud growth [Evidence IGI,IMP] [PMID 12972564]; GO_process: GO:0007114 - cell budding [Evidence IGI,IMP] [PMID 11854408]; GO_process: GO:0000902 - cell morphogenesis [Evidence IGI,IMP] [PMID 11854408]; Tao3p 87144 TAO3 30033854 TAO3 Sugiyamaella lignohabitans Tao3p XP_018736881.1 80095 R 796027 CDS AWJ20_1993 30033855 complement(90163..91146) B 1 NC_031674.1 Histone glutamine methyltransferase, modifies H2A at Q105 in nucleolus; component of the small subunit processome complex, which is required for processing of pre-18S rRNA; ortholog of mammalian fibrillarin; GO_component: GO:0030686 - 90S preribosome [Evidence IDA] [PMID 12150911]; GO_component: GO:0031428 - box C/D snoRNP complex [Evidence IDA] [PMID 11081632]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 11932453]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 2686980]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IDA] [PMID 16702403]; GO_component: GO:0032040 - small-subunit processome [Evidence IDA] [PMID 12068309]; GO_function: GO:0003723 - RNA binding [Evidence IEA,IEA]; GO_function: GO:1990259 - histone-glutamine methyltransferase activity [Evidence IMP] [PMID 24352239]; GO_function: GO:0008168 - methyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0008649 - rRNA methyltransferase activity [Evidence IDA,IMP] [PMID 12215523]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0000494 - box C/D snoRNA 3'-end processing [Evidence IMP] [PMID 10733567]; GO_process: GO:0000494 - box C/D snoRNA 3'-end processing [Evidence IMP] [PMID 15167896]; GO_process: GO:1990258 - histone glutamine methylation [Evidence IDA,IMP] [PMID 24352239]; GO_process: GO:0032259 - methylation [Evidence IEA]; GO_process: GO:0031167 - rRNA methylation [Evidence IDA,IMP] [PMID 12215523]; GO_process: GO:0031167 - rRNA methylation [Evidence IMP] [PMID 8431947]; GO_process: GO:0006364 - rRNA processing [Evidence IEA,IEA]; GO_process: GO:0006364 - rRNA processing [Evidence IMP] [PMID 1825809]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; GO_process: GO:0043144 - snoRNA processing [Evidence IMP] [PMID 1825809]; GO_process: GO:0008033 - tRNA processing [Evidence IEA]; rRNA methyltransferase NOP1 91146 NOP1 30033855 NOP1 Sugiyamaella lignohabitans rRNA methyltransferase NOP1 XP_018736882.1 90163 R 796027 CDS AWJ20_1994 30033856 92150..92707 B 1 NC_031674.1 Ribosomal 60S subunit protein L17A; copurifies with the Dam1 complex (aka DASH complex); homologous to mammalian ribosomal protein L17 and bacterial L22; RPL17A has a paralog, RPL17B, that arose from the whole genome duplication; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0022625 - cytosolic large ribosomal subunit [Evidence IDA] [PMID 18782943]; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0015934 - large ribosomal subunit [Evidence IEA]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA,IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IDA] [PMID 18782943]; GO_process: GO:0002181 - cytoplasmic translation [Evidence IDA] [PMID 18782943]; GO_process: GO:0006412 - translation [Evidence IEA]; ribosomal 60S subunit protein L17A 92707 RPL17A 30033856 RPL17A Sugiyamaella lignohabitans ribosomal 60S subunit protein L17A XP_018736883.1 92150 D 796027 CDS AWJ20_1995 30033857 complement(93098..95224) B 1 NC_031674.1 Golgi membrane protein with similarity to mammalian CASP; genetic interactions with GOS1 (encoding a Golgi snare protein) suggest a role in Golgi function; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA]; GO_component: GO:0000139 - Golgi membrane [Evidence IGI] [PMID 12429822]; GO_component: GO:0030173 - integral component of Golgi membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0048193 - Golgi vesicle transport [Evidence IGI] [PMID 12429822]; GO_process: GO:0006891 - intra-Golgi vesicle-mediated transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Coy1p 95224 COY1 30033857 COY1 Sugiyamaella lignohabitans Coy1p XP_018736884.1 93098 R 796027 CDS AWJ20_1996 30033858 96127..97461 B 1 NC_031674.1 nucleoside transmembrane transporter FUN26 97461 FUN26 30033858 FUN26 Sugiyamaella lignohabitans nucleoside transmembrane transporter FUN26 XP_018736885.1 96127 D 796027 CDS AWJ20_1997 30033859 complement(97544..97846) B 1 NC_031674.1 uncharacterized protein 97846 30033859 AWJ20_1997 Sugiyamaella lignohabitans uncharacterized protein XP_018736886.1 97544 R 796027 CDS AWJ20_1998 30033860 98510..99682 B 1 NC_031674.1 histone deacetylase RPD3 99682 RPD3 30033860 RPD3 Sugiyamaella lignohabitans histone deacetylase RPD3 XP_018736887.1 98510 D 796027 CDS AWJ20_1999 30033861 100425..101837 B 1 NC_031674.1 Component of mRNP complexes associated with polyribosomes; implicated in secretion and nuclear segregation; multicopy suppressor of BFA (Brefeldin A) sensitivity; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 23222640]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 23222640]; GO_component: GO:0042175 - nuclear outer membrane-endoplasmic reticulum membrane network [Evidence IDA] [PMID 11410665]; GO_component: GO:0005844 - polysome [Evidence IDA] [PMID 11410665]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IDA] [PMID 11410665]; GO_function: GO:0003723 - RNA binding [Evidence IDA] [PMID 11410665]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_process: GO:0016071 - mRNA metabolic process [Evidence IPI] [PMID 11410665]; GO_process: GO:0007126 - meiotic nuclear division [Evidence IMP] [PMID 8913743]; GO_process: GO:0007088 - regulation of mitosis [Evidence IMP] [PMID 8913743]; Bfr1p 101837 BFR1 30033861 BFR1 Sugiyamaella lignohabitans Bfr1p XP_018736888.1 100425 D 796027 CDS AWJ20_2000 30033865 complement(101977..103020) B 1 NC_031674.1 Plasma membrane H+-pantothenate symporter; confers sensitivity to the antifungal agent fenpropimorph; relocalizes from vacuole to cytoplasm upon DNA replication stress; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 22842922]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IGI,ISS] [PMID 10373490]; GO_function: GO:0015233 - pantothenate transmembrane transporter activity [Evidence IGI,IMP] [PMID 10373490]; GO_process: GO:0006897 - endocytosis [Evidence IMP] [PMID 15020461]; GO_process: GO:0015887 - pantothenate transmembrane transport [Evidence IGI,IMP] [PMID 10373490]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Fen2p 103020 FEN2 30033865 FEN2 Sugiyamaella lignohabitans Fen2p XP_018736889.1 101977 R 796027 CDS AWJ20_2001 30033866 104711..107242 B 1 NC_031674.1 uncharacterized protein 107242 30033866 AWJ20_2001 Sugiyamaella lignohabitans uncharacterized protein XP_018736890.1 104711 D 796027 CDS AWJ20_2002 30033867 109047..112073 B 1 NC_031674.1 Specific translational activator for the COX1 mRNA; also influences stability of intron-containing COX1 primary transcripts; localizes to the mitochondrial inner membrane; contains seven pentatricopeptide repeats (PPRs); GO_component: GO:0031314 - extrinsic component of mitochondrial inner membrane [Evidence IDA] [PMID 18039654]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IDA] [PMID 9692914]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IDA] [PMID 9692914]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0045182 - translation regulator activity [Evidence IGI] [PMID 7664742]; GO_process: GO:0016070 - RNA metabolic process [Evidence IMP] [PMID 7664742]; GO_process: GO:0009060 - aerobic respiration [Evidence IMP] [PMID 7664742]; GO_process: GO:0097034 - mitochondrial respiratory chain complex IV biogenesis [Evidence IMP] [PMID 7664742]; GO_process: GO:0070134 - positive regulation of mitochondrial translational initiation [Evidence IMP] [PMID 18039654]; GO_process: GO:0070134 - positive regulation of mitochondrial translational initiation [Evidence IMP] [PMID 7664742]; Pet309p 112073 PET309 30033867 PET309 Sugiyamaella lignohabitans Pet309p XP_018736891.1 109047 D 796027 CDS AWJ20_2003 30033868 complement(112221..112631) B 1 NC_031674.1 Subunit of signal peptidase complex; complex catalyzes cleavage of N-terminal signal sequences of proteins targeted to the secretory pathway; homologous to mammalian SPC22/23; other members of the complex are Spc1p, Spc2p, and Sec11p; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005787 - signal peptidase complex [Evidence IEA]; GO_component: GO:0005787 - signal peptidase complex [Evidence IDA] [PMID 1846444]; GO_component: GO:0005787 - signal peptidase complex [Evidence IDA] [PMID 8910564]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IMP] [PMID 9148930]; GO_function: GO:0008233 - peptidase activity [Evidence IMP] [PMID 9148931]; GO_process: GO:0045047 - protein targeting to ER [Evidence IMP] [PMID 9148931]; GO_process: GO:0006508 - proteolysis [Evidence IEA]; GO_process: GO:0006465 - signal peptide processing [Evidence IEA]; GO_process: GO:0006465 - signal peptide processing [Evidence IMP] [PMID 9148930]; GO_process: GO:0006465 - signal peptide processing [Evidence IDA,IMP] [PMID 9148931]; Spc3p 112631 SPC3 30033868 SPC3 Sugiyamaella lignohabitans Spc3p XP_018736892.1 112221 R 796027 CDS AWJ20_2004 30033869 115250..116755 B 1 NC_031674.1 Succinate semialdehyde dehydrogenase; involved in the utilization of gamma-aminobutyrate (GABA) as a nitrogen source; part of the 4-aminobutyrate and glutamate degradation pathways; localized to the cytoplasm; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0016620 - oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor [Evidence IEA]; GO_function: GO:0009013 - succinate-semialdehyde dehydrogenase [NAD(P)+] activity [Evidence IEA,IEA]; GO_function: GO:0009013 - succinate-semialdehyde dehydrogenase [NAD(P)+] activity [Evidence IMP,ISS] [PMID 11031268]; GO_function: GO:0009013 - succinate-semialdehyde dehydrogenase [NAD(P)+] activity [Evidence IMP] [PMID 3888627]; GO_process: GO:0034599 - cellular response to oxidative stress [Evidence IMP] [PMID 11031268]; GO_process: GO:0009450 - gamma-aminobutyric acid catabolic process [Evidence IEA,IEA]; GO_process: GO:0009450 - gamma-aminobutyric acid catabolic process [Evidence IEP,IMP,ISS] [PMID 11031268]; GO_process: GO:0009450 - gamma-aminobutyric acid catabolic process [Evidence IMP] [PMID 3888627]; GO_process: GO:0006540 - glutamate decarboxylation to succinate [Evidence IGI,IMP,ISS] [PMID 11031268]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; succinate-semialdehyde dehydrogenase (NAD(P)(+)) 116755 UGA2 30033869 UGA2 Sugiyamaella lignohabitans succinate-semialdehyde dehydrogenase (NAD(P)(+)) XP_018736893.1 115250 D 796027 CDS AWJ20_2005 30033870 complement(115696..116136) B 1 NC_031674.1 uncharacterized protein 116136 30033870 AWJ20_2005 Sugiyamaella lignohabitans uncharacterized protein XP_018736894.1 115696 R 796027 CDS AWJ20_2006 30033871 complement(116820..118130) B 1 NC_031674.1 uncharacterized protein 118130 30033871 AWJ20_2006 Sugiyamaella lignohabitans uncharacterized protein XP_018736895.1 116820 R 796027 CDS AWJ20_2007 30033872 118446..119633 B 1 NC_031674.1 putative DNA-dependent ATPase RAD57 119633 RAD57 30033872 RAD57 Sugiyamaella lignohabitans putative DNA-dependent ATPase RAD57 XP_018736896.1 118446 D 796027 CDS AWJ20_2008 30033873 119897..122404 B 1 NC_031674.1 Protein involved in DNA replication; component of the Mcm2-7 hexameric helicase complex that binds chromatin as a part of the pre-replicative complex; relative distribution to the nucleus increases upon DNA replication stress; GO_component: GO:0031261 - DNA replication preinitiation complex [Evidence IDA] [PMID 9554851]; GO_component: GO:0042555 - MCM complex [Evidence IEA]; GO_component: GO:0042555 - MCM complex [Evidence IDA] [PMID 12480933]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 10704410]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005656 - nuclear pre-replicative complex [Evidence IDA] [PMID 16824194]; GO_component: GO:0005656 - nuclear pre-replicative complex [Evidence IDA] [PMID 9335335]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 10704410]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_component: GO:0031298 - replication fork protection complex [Evidence IDA] [PMID 16531994]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0003678 - DNA helicase activity [Evidence IEA]; GO_function: GO:0003678 - DNA helicase activity [Evidence IDA] [PMID 18657510]; GO_function: GO:0003688 - DNA replication origin binding [Evidence IDA] [PMID 11756674]; GO_function: GO:0003688 - DNA replication origin binding [Evidence IDA] [PMID 16824194]; GO_function: GO:0003682 - chromatin binding [Evidence IDA] [PMID 10783164]; GO_function: GO:0004386 - helicase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0003697 - single-stranded DNA binding [Evidence IMP] [PMID 17895243]; GO_function: GO:0017116 - single-stranded DNA-dependent ATP-dependent DNA helicase activity [Evidence IDA] [PMID 18657510]; GO_process: GO:0032508 - DNA duplex unwinding [Evidence IEA]; GO_process: GO:0006260 - DNA replication [Evidence IEA,IEA]; GO_process: GO:0006270 - DNA replication initiation [Evidence IEA]; GO_process: GO:0006271 - DNA strand elongation involved in DNA replication [Evidence IMP] [PMID 10834843]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IMP] [PMID 22564307]; GO_process: GO:0000727 - double-strand break repair via break-induced replication [Evidence IMP] [PMID 20516198]; GO_process: GO:1902450 - negative regulation of ATP-dependent DNA helicase activity [Evidence IDA] [PMID 13679365]; GO_process: GO:0033260 - nuclear cell cycle DNA replication [Evidence IMP] [PMID 10834843]; GO_process: GO:0006267 - pre-replicative complex assembly involved in nuclear cell cycle DNA replication [Evidence IDA] [PMID 16824194]; GO_process: GO:0006267 - pre-replicative complex assembly involved in nuclear cell cycle DNA replication [Evidence IPI] [PMID 9335335]; MCM DNA helicase complex subunit MCM2 122404 MCM2 30033873 MCM2 Sugiyamaella lignohabitans MCM DNA helicase complex subunit MCM2 XP_018736897.1 119897 D 796027 CDS AWJ20_2009 30033874 complement(122694..123470) B 1 NC_031674.1 RNA polymerase III-inhibiting protein MAF1 123470 MAF1 30033874 MAF1 Sugiyamaella lignohabitans RNA polymerase III-inhibiting protein MAF1 XP_018736898.1 122694 R 796027 CDS AWJ20_2010 30033876 complement(124618..125844) B 1 NC_031674.1 Catalytic subunit of protein phosphatase PP4 complex; active complex is composed of Pph3p and Psy2p, with Psy4p apparently providing additional substrate specificity in some cases; regulates recovery from the DNA damage checkpoint and also the gene conversion- and single-strand annealing-mediated pathways of meiotic double-strand break repair; involved in activation of Gln3p to alleviate nitrogen catabolite repression; Pph3p and Psy2p localize to foci on meiotic chromosomes; GO_component: GO:0000794 - condensed nuclear chromosome [Evidence IDA] [PMID 20951350]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0030289 - protein phosphatase 4 complex [Evidence IDA,IMP] [PMID 16299494]; GO_component: GO:0030289 - protein phosphatase 4 complex [Evidence IDA] [PMID 17517611]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA,IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004721 - phosphoprotein phosphatase activity [Evidence IEA,IEA]; GO_function: GO:0004722 - protein serine/threonine phosphatase activity [Evidence IDA,IMP] [PMID 16299494]; GO_function: GO:0004722 - protein serine/threonine phosphatase activity [Evidence IDA] [PMID 7941742]; GO_process: GO:0000724 - double-strand break repair via homologous recombination [Evidence IGI] [PMID 21135129]; GO_process: GO:2000002 - negative regulation of DNA damage checkpoint [Evidence IMP] [PMID 16299494]; GO_process: GO:2000002 - negative regulation of DNA damage checkpoint [Evidence IMP] [PMID 17517611]; GO_process: GO:1902660 - negative regulation of glucose mediated signaling pathway [Evidence IMP] [PMID 24277933]; GO_process: GO:0051173 - positive regulation of nitrogen compound metabolic process [Evidence IMP] [PMID 10940301]; GO_process: GO:0006470 - protein dephosphorylation [Evidence IDA,IMP] [PMID 16299494]; GO_process: GO:0006470 - protein dephosphorylation [Evidence IDA] [PMID 7941742]; GO_process: GO:0072462 - signal transduction involved in meiotic recombination checkpoint [Evidence IMP] [PMID 20951350]; phosphoprotein phosphatase PP4 catalytic subunit PPH3 125844 PPH3 30033876 PPH3 Sugiyamaella lignohabitans phosphoprotein phosphatase PP4 catalytic subunit PPH3 XP_018736899.1 124618 R 796027 CDS AWJ20_2011 30033877 129665..132304 B 1 NC_031674.1 Membrane hypothetical protein; overexpression suppresses NaCl sensitivity of sro7 mutant cells by restoring sodium pump (Ena1p) localization to the plasma membrane; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 19001347]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA,IEA]; GO_component: GO:0016020 - membrane [Evidence IDA] [PMID 17005914]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006893 - Golgi to plasma membrane transport [Evidence IGI] [PMID 17005914]; Rsn1p 132304 RSN1 30033877 RSN1 Sugiyamaella lignohabitans Rsn1p XP_018736900.1 129665 D 796027 CDS AWJ20_2012 30033878 132768..133616 B 1 NC_031674.1 Cytoplasmic inorganic pyrophosphatase (PPase); homodimer that catalyzes the rapid exchange of oxygens from Pi with water, highly expressed and essential for viability, active-site residues show identity to those from E. coli PPase; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0004427 - inorganic diphosphatase activity [Evidence IEA,IEA]; GO_function: GO:0004427 - inorganic diphosphatase activity [Evidence IDA] [PMID 8224193]; GO_function: GO:0000287 - magnesium ion binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_process: GO:0006796 - phosphate-containing compound metabolic process [Evidence IEA]; GO_process: GO:0006796 - phosphate-containing compound metabolic process [Evidence IC] [PMID 8224193]; inorganic diphosphatase IPP1 133616 IPP1 30033878 IPP1 Sugiyamaella lignohabitans inorganic diphosphatase IPP1 XP_018736901.1 132768 D 796027 CDS AWJ20_2013 30033879 complement(134501..136195) B 1 NC_031674.1 Phosphoribosylanthranilate isomerase; catalyzes the third step in tryptophan biosynthesis; in 2004, the sequence of TRP1 from strain S228C was updated by changing the previously annotated internal STOP (TAA) to serine (TCA); GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016853 - isomerase activity [Evidence IEA]; GO_function: GO:0004640 - phosphoribosylanthranilate isomerase activity [Evidence IEA,IEA]; GO_function: GO:0004640 - phosphoribosylanthranilate isomerase activity [Evidence IDA] [PMID 3286643]; GO_function: GO:0004640 - phosphoribosylanthranilate isomerase activity [Evidence IMP] [PMID 348687]; GO_process: GO:0009073 - aromatic amino acid family biosynthetic process [Evidence IEA]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0000162 - tryptophan biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0000162 - tryptophan biosynthetic process [Evidence IMP] [PMID 10790693]; GO_process: GO:0000162 - tryptophan biosynthetic process [Evidence IDA] [PMID 3286643]; GO_process: GO:0000162 - tryptophan biosynthetic process [Evidence IMP] [PMID 348687]; GO_process: GO:0006568 - tryptophan metabolic process [Evidence IEA]; phosphoribosylanthranilate isomerase TRP1 136195 TRP1 30033879 TRP1 Sugiyamaella lignohabitans phosphoribosylanthranilate isomerase TRP1 XP_018736902.1 134501 R 796027 CDS AWJ20_2014 30033880 137434..138573 B 1 NC_031674.1 Protein involved in threonylcarbamoyl adenosine biosynthesis; Sua5p and Qri7p are necessary and sufficient for RNA t6A modification in vitro; null mutant lacks N6-threonylcarbamoyl adenosine (t6A) modification in the anticodon loop of ANN-decoding tRNA; member of conserved YrdC/Sua5 family; binds single-stranded telomeric DNA and null mutant has abnormal telomere length; GO_component: GO:0005694 - chromosome [Evidence IEA]; GO_component: GO:0000781 - chromosome, telomeric region [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0003725 - double-stranded RNA binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016779 - nucleotidyltransferase activity [Evidence IEA]; GO_function: GO:0043047 - single-stranded telomeric DNA binding [Evidence IDA] [PMID 19369944]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006417 - regulation of translation [Evidence IEA]; GO_process: GO:0006450 - regulation of translational fidelity [Evidence IMP] [PMID 19884342]; GO_process: GO:0008033 - tRNA processing [Evidence IEA]; GO_process: GO:0000723 - telomere maintenance [Evidence IMP] [PMID 19369944]; GO_process: GO:0070526 - threonylcarbamoyladenosine biosynthetic process [Evidence IDA] [PMID 23620299]; GO_process: GO:0070525 - threonylcarbamoyladenosine metabolic process [Evidence IMP] [PMID 19287007]; GO_process: GO:0070525 - threonylcarbamoyladenosine metabolic process [Evidence IMP] [PMID 21183954]; Sua5p 138573 SUA5 30033880 SUA5 Sugiyamaella lignohabitans Sua5p XP_018736903.1 137434 D 796027 CDS AWJ20_2015 30033881 complement(138695..141475) B 1 NC_031674.1 High affinity Ca2+/Mn2+ P-type ATPase; required for Ca2+ and Mn2+ transport into Golgi; involved in Ca2+ dependent protein sorting and processing; D53A mutant (Mn2+ transporting) is rapamycin sensitive, Q783A mutant (Ca2+ transporting) is rapamycin resistant; Mn2+ transport into Golgi lumen appears to be required for rapamycin sensitivity; mutations in human homolog ATP2C1 cause acantholytic skin condition Hailey-Hailey disease; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA]; GO_component: GO:0000139 - Golgi membrane [Evidence IDA] [PMID 24124599]; GO_component: GO:0000139 - Golgi membrane [Evidence IDA] [PMID 9092527]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0005509 - calcium ion binding [Evidence IDA] [PMID 10545175]; GO_function: GO:0005388 - calcium-transporting ATPase activity [Evidence IEA,IEA]; GO_function: GO:0005388 - calcium-transporting ATPase activity [Evidence IDA,IMP] [PMID 10545175]; GO_function: GO:0005388 - calcium-transporting ATPase activity [Evidence IMP] [PMID 1379856]; GO_function: GO:0019829 - cation-transporting ATPase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0015410 - manganese-transporting ATPase activity [Evidence IDA] [PMID 10801856]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_process: GO:0070588 - calcium ion transmembrane transport [Evidence IEA,IEA]; GO_process: GO:0006816 - calcium ion transport [Evidence IEA,IEA]; GO_process: GO:0006816 - calcium ion transport [Evidence IDA,IMP] [PMID 10545175]; GO_process: GO:0006812 - cation transport [Evidence IEA]; GO_process: GO:0006874 - cellular calcium ion homeostasis [Evidence IGI] [PMID 23569283]; GO_process: GO:0006887 - exocytosis [Evidence IGI] [PMID 1379856]; GO_process: GO:0006811 - ion transport [Evidence IEA]; GO_process: GO:0006828 - manganese ion transport [Evidence IDA] [PMID 10801856]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Ca(2+)/Mn(2+)-transporting P-type ATPase PMR1 141475 PMR1 30033881 PMR1 Sugiyamaella lignohabitans Ca(2+)/Mn(2+)-transporting P-type ATPase PMR1 XP_018736904.1 138695 R 796027 CDS AWJ20_2016 30033882 140253..140750 B 1 NC_031674.1 unintegrated signal peptide 140750 30033882 AWJ20_2016 Sugiyamaella lignohabitans unintegrated signal peptide XP_018736905.1 140253 D 796027 CDS AWJ20_2017 30033883 complement(142679..145846) B 1 NC_031674.1 Subunit alpha of assimilatory sulfite reductase; complex converts sulfite into sulfide; GO_component: GO:0009337 - sulfite reductase complex (NADPH) [Evidence IDA] [PMID 6751400]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0016903 - oxidoreductase activity, acting on the aldehyde or oxo group of donors [Evidence IEA]; GO_function: GO:0004783 - sulfite reductase (NADPH) activity [Evidence IEA]; GO_function: GO:0004783 - sulfite reductase (NADPH) activity [Evidence IDA] [PMID 6751400]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0019344 - cysteine biosynthetic process [Evidence IEA]; GO_process: GO:0070814 - hydrogen sulfide biosynthetic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0009086 - methionine biosynthetic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0000103 - sulfate assimilation [Evidence IMP] [PMID 19236486]; GO_process: GO:0000103 - sulfate assimilation [Evidence IMP] [PMID 7928966]; sulfite reductase subunit alpha 145846 MET10 30033883 MET10 Sugiyamaella lignohabitans sulfite reductase subunit alpha XP_018736906.1 142679 R 796027 CDS AWJ20_2018 30033884 148020..150236 B 1 NC_031674.1 GID Complex subunit, serves as adaptor for regulatory subunit Vid24p; protein involved in proteasome-dependent catabolite degradation of fructose-1,6-bisphosphatase (FBPase); localized to the nucleus and the cytoplasm; GO_component: GO:0034657 - GID complex [Evidence IDA] [PMID 16872538]; GO_component: GO:0034657 - GID complex [Evidence IDA] [PMID 18508925]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0030437 - ascospore formation [Evidence IMP] [PMID 12586695]; GO_process: GO:0045721 - negative regulation of gluconeogenesis [Evidence IMP] [PMID 12686616]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 12586695]; GO_process: GO:0043161 - proteasome-mediated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 12686616]; GO_process: GO:0043161 - proteasome-mediated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 15358789]; GO_process: GO:0007039 - vacuolar protein catabolic process [Evidence IMP] [PMID 15358789]; glucose-induced degradation complex subunit VID28 150236 VID28 30033884 VID28 Sugiyamaella lignohabitans glucose-induced degradation complex subunit VID28 XP_018736907.1 148020 D 796027 CDS AWJ20_2019 30033885 complement(150344..153412) B 1 NC_031674.1 uncharacterized protein 153412 30033885 AWJ20_2019 Sugiyamaella lignohabitans uncharacterized protein XP_018736908.1 150344 R 796027 CDS AWJ20_2020 30033887 154317..154637 B 1 NC_031674.1 Core component of transport protein particle (TRAPP) complexes I-III; TRAPP complexes are related multimeric guanine nucleotide-exchange factors for the GTPase Ypt1p, regulating ER-Golgi traffic (TRAPPI), intra-Golgi traffic (TRAPPII), endosome-Golgi traffic (TRAPPII and III) and autophagy (TRAPPIII); mutation of conserved residues leads to defects in endocytic recycling and a block in sporulation/meiosis; mutations in the human homolog cause the spondyloepiphyseal dysplasia; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA,IEA]; GO_component: GO:1990070 - TRAPPI protein complex [Evidence IDA] [PMID 11239471]; GO_component: GO:1990071 - TRAPPII protein complex [Evidence IDA] [PMID 11239471]; GO_component: GO:1990072 - TRAPPIII protein complex [Evidence IDA] [PMID 20375281]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA,IEA]; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0000407 - pre-autophagosomal structure [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006888 - ER to Golgi vesicle-mediated transport [Evidence IEA]; GO_process: GO:0006888 - ER to Golgi vesicle-mediated transport [Evidence IMP] [PMID 11239471]; GO_process: GO:0006888 - ER to Golgi vesicle-mediated transport [Evidence IGI] [PMID 9564032]; GO_process: GO:0006914 - autophagy [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IEA]; Trs20p 154637 TRS20 30033887 TRS20 Sugiyamaella lignohabitans Trs20p XP_018736909.1 154317 D 796027 CDS AWJ20_2021 30033888 complement(155042..156616) B 1 NC_031674.1 uncharacterized protein 156616 30033888 AWJ20_2021 Sugiyamaella lignohabitans uncharacterized protein XP_018736910.1 155042 R 796027 CDS AWJ20_2022 30033889 158301..159746 B 1 NC_031674.1 Mitochondrial distribution and morphology protein 34 159746 30033889 AWJ20_2022 Sugiyamaella lignohabitans Mitochondrial distribution and morphology protein 34 XP_018736911.1 158301 D 796027 CDS AWJ20_2023 30033890 complement(162624..165347) B 1 NC_031674.1 Ubiquitin-protein ligase involved in ER-associated protein degradation; located in the ER/nuclear envelope; ssm4 mutation suppresses mRNA instability caused by an rna14 mutation; GO_component: GO:0000837 - Doa10p ubiquitin ligase complex [Evidence IDA] [PMID 16873066]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0030176 - integral component of endoplasmic reticulum membrane [Evidence IDA] [PMID 11641273]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005635 - nuclear envelope [Evidence IDA] [PMID 11641273]; GO_component: GO:0005637 - nuclear inner membrane [Evidence IEA]; GO_component: GO:0005637 - nuclear inner membrane [Evidence IDA] [PMID 17051211]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence IDA] [PMID 11641273]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0030433 - ER-associated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 11641273]; GO_process: GO:0030433 - ER-associated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 15252059]; GO_process: GO:0016567 - protein ubiquitination [Evidence IEA]; E3 ubiquitin-protein ligase SSM4 165347 SSM4 30033890 SSM4 Sugiyamaella lignohabitans E3 ubiquitin-protein ligase SSM4 XP_018736912.1 162624 R 796027 CDS AWJ20_2024 30033891 complement(165903..166142) B 1 NC_031674.1 Ubiquitin-protein ligase involved in ER-associated protein degradation; located in the ER/nuclear envelope; ssm4 mutation suppresses mRNA instability caused by an rna14 mutation; GO_component: GO:0000837 - Doa10p ubiquitin ligase complex [Evidence IDA] [PMID 16873066]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0030176 - integral component of endoplasmic reticulum membrane [Evidence IDA] [PMID 11641273]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005635 - nuclear envelope [Evidence IDA] [PMID 11641273]; GO_component: GO:0005637 - nuclear inner membrane [Evidence IEA]; GO_component: GO:0005637 - nuclear inner membrane [Evidence IDA] [PMID 17051211]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence IDA] [PMID 11641273]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0030433 - ER-associated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 11641273]; GO_process: GO:0030433 - ER-associated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 15252059]; GO_process: GO:0016567 - protein ubiquitination [Evidence IEA]; E3 ubiquitin-protein ligase SSM4 166142 SSM4 30033891 SSM4 Sugiyamaella lignohabitans E3 ubiquitin-protein ligase SSM4 XP_018736913.1 165903 R 796027 CDS AWJ20_2025 30033892 167427..169031 B 1 NC_031674.1 tRNA methyltransferase; 5-methylates the uridine residue at position 54 of tRNAs and may also have a role in tRNA stabilization or maturation; endo-exonuclease with a role in DNA repair; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0008173 - RNA methyltransferase activity [Evidence IEA]; GO_function: GO:0030697 - S-adenosylmethionine-dependent tRNA (m5U54) methyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0051908 - double-stranded DNA 5'-3' exodeoxyribonuclease activity [Evidence IDA] [PMID 17205207]; GO_function: GO:0008168 - methyltransferase activity [Evidence IEA]; GO_function: GO:0000014 - single-stranded DNA endodeoxyribonuclease activity [Evidence IDA] [PMID 17205207]; GO_function: GO:0030696 - tRNA (m5U54) methyltransferase activity [Evidence IDA,IMP] [PMID 10864043]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006281 - DNA repair [Evidence IGI,IMP] [PMID 17205207]; GO_process: GO:0001510 - RNA methylation [Evidence IEA]; GO_process: GO:0006396 - RNA processing [Evidence IEA]; GO_process: GO:0006302 - double-strand break repair [Evidence IGI,IMP] [PMID 17534700]; GO_process: GO:0032259 - methylation [Evidence IEA]; GO_process: GO:0006400 - tRNA modification [Evidence IDA] [PMID 10864043]; GO_process: GO:0008033 - tRNA processing [Evidence IEA,IEA]; Trm2p 169031 TRM2 30033892 TRM2 Sugiyamaella lignohabitans Trm2p XP_018736914.1 167427 D 796027 CDS AWJ20_2027 30033893 complement(175785..177227) B 1 NC_031674.1 uncharacterized protein 177227 30033893 AWJ20_2027 Sugiyamaella lignohabitans uncharacterized protein XP_018736915.1 175785 R 796027 CDS AWJ20_2029 30033895 complement(178914..179924) B 1 NC_031674.1 Bifunctional purine biosynthesis protein purH 179924 30033895 AWJ20_2029 Sugiyamaella lignohabitans Bifunctional purine biosynthesis protein purH XP_018736916.1 178914 R 796027 CDS AWJ20_2030 30033897 180932..183247 B 1 NC_031674.1 uncharacterized protein 183247 30033897 AWJ20_2030 Sugiyamaella lignohabitans uncharacterized protein XP_018736917.1 180932 D 796027 CDS AWJ20_2031 30033898 186176..188560 B 1 NC_031674.1 High affinity sulfate permease of the SulP anion transporter family; sulfate uptake is mediated by specific sulfate transporters Sul1p and Sul2p, which control the concentration of endogenous activated sulfate intermediates; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IMP,ISS] [PMID 7616962]; GO_function: GO:0008271 - secondary active sulfate transmembrane transporter activity [Evidence IEA]; GO_function: GO:0015116 - sulfate transmembrane transporter activity [Evidence IEA]; GO_function: GO:0015116 - sulfate transmembrane transporter activity [Evidence IGI,IMP] [PMID 7616962]; GO_process: GO:1902358 - sulfate transmembrane transport [Evidence IEA]; GO_process: GO:0008272 - sulfate transport [Evidence IEA]; GO_process: GO:0008272 - sulfate transport [Evidence IGI,IMP] [PMID 7616962]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IMP] [PMID 7616962]; GO_process: GO:0006810 - transport [Evidence IEA]; Sul1p 188560 SUL1 30033898 SUL1 Sugiyamaella lignohabitans Sul1p XP_018736918.1 186176 D 796027 CDS AWJ20_2032 30033899 complement(188760..189698) B 1 NC_031674.1 Essential protein required for pre-mRNA splicing; associates transiently with the spliceosomal NTC ('nineteen complex') and acts after Prp2p to promote the first catalytic reaction of splicing; GO_component: GO:0071006 - U2-type catalytic step 1 spliceosome [Evidence IDA] [PMID 17515604]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0000384 - first spliceosomal transesterification activity [Evidence IDA] [PMID 17515604]; GO_process: GO:0000349 - generation of catalytic spliceosome for first transesterification step [Evidence IDA] [PMID 17515604]; Yju2p 189698 YJU2 30033899 YJU2 Sugiyamaella lignohabitans Yju2p XP_018736919.1 188760 R 796027 CDS AWJ20_2033 30033900 190962..193301 B 1 NC_031674.1 Component of the Trk1p-Trk2p potassium transport system; contributes to K(+) supply and maintenance of plasma-membrane potential; TRK2 has a paralog, TRK1, that arose from the whole genome duplication; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence TAS] [PMID 2072919]; GO_function: GO:0008324 - cation transmembrane transporter activity [Evidence IEA]; GO_function: GO:0015079 - potassium ion transmembrane transporter activity [Evidence IEA]; GO_function: GO:0015079 - potassium ion transmembrane transporter activity [Evidence IDA,ISS] [PMID 2072919]; GO_process: GO:0006812 - cation transport [Evidence IEA]; GO_process: GO:0030007 - cellular potassium ion homeostasis [Evidence IDA] [PMID 2072919]; GO_process: GO:0006811 - ion transport [Evidence IEA]; GO_process: GO:0071805 - potassium ion transmembrane transport [Evidence IEA]; GO_process: GO:0006813 - potassium ion transport [Evidence IEA]; GO_process: GO:0042391 - regulation of membrane potential [Evidence IMP] [PMID 21424545]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Trk2p 193301 TRK2 30033900 TRK2 Sugiyamaella lignohabitans Trk2p XP_018736920.1 190962 D 796027 CDS AWJ20_2034 30033901 194218..195855 B 1 NC_031674.1 Polyamine transporter of the major facilitator superfamily; member of the 12-spanner drug:H(+) antiporter DHA1 family; recognizes spermine, putrescine, and spermidine; catalyzes uptake of polyamines at alkaline pH and excretion at acidic pH; during oxidative stress exports spermine, spermidine from the cell, which controls timing of expression of stress-responsive genes; phosphorylation enhances activity and sorting to the plasma membrane; GO_component: GO:0033101 - cellular bud membrane [Evidence IDA] [PMID 13679573]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IMP] [PMID 11171066]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 12562762]; GO_component: GO:0005886 - plasma membrane [Evidence IDA,IMP] [PMID 15637075]; GO_function: GO:0015297 - antiporter activity [Evidence IEA]; GO_function: GO:0015606 - spermidine transmembrane transporter activity [Evidence IMP] [PMID 11171066]; GO_function: GO:0015606 - spermidine transmembrane transporter activity [Evidence IDA,IMP] [PMID 15637075]; GO_function: GO:0000297 - spermine transmembrane transporter activity [Evidence IMP] [PMID 11171066]; GO_function: GO:0000297 - spermine transmembrane transporter activity [Evidence IDA,IMP] [PMID 15637075]; GO_function: GO:0000297 - spermine transmembrane transporter activity [Evidence IMP] [PMID 9920864]; GO_process: GO:1902047 - polyamine transmembrane transport [Evidence IMP] [PMID 24136413]; GO_process: GO:0015847 - putrescine transport [Evidence IMP] [PMID 9920864]; GO_process: GO:0015848 - spermidine transport [Evidence IMP] [PMID 11171066]; GO_process: GO:0015848 - spermidine transport [Evidence IDA,IMP] [PMID 15637075]; GO_process: GO:0015848 - spermidine transport [Evidence IMP] [PMID 9920864]; GO_process: GO:0000296 - spermine transport [Evidence IMP] [PMID 11171066]; GO_process: GO:0000296 - spermine transport [Evidence IDA,IMP] [PMID 15637075]; GO_process: GO:0000296 - spermine transport [Evidence IMP] [PMID 9920864]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Tpo1p 195855 TPO1 30033901 TPO1 Sugiyamaella lignohabitans Tpo1p XP_018736921.1 194218 D 796027 CDS AWJ20_2035 30033902 197062..199857 B 1 NC_031674.1 mitogen-activated protein kinase kinase PBS2 199857 PBS2 30033902 PBS2 Sugiyamaella lignohabitans mitogen-activated protein kinase kinase PBS2 XP_018736922.1 197062 D 796027 CDS AWJ20_2036 30033903 200119..201759 B 1 NC_031674.1 hypothetical protein; may have a role in lipid metabolism, based on localization to lipid droplets; predicted to be palmitoylated; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0005811 - lipid particle [Evidence IDA] [PMID 24868093]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; Anr2p 201759 ANR2 30033903 ANR2 Sugiyamaella lignohabitans Anr2p XP_018736923.1 200119 D 796027 CDS AWJ20_2037 30033904 complement(201957..204599) B 1 NC_031674.1 Molecular chaperone of the endoplasmic reticulum lumen; involved in polypeptide translocation and folding; nucleotide exchange factor for the ER lumenal Hsp70 chaperone Kar2p; regulated by the unfolded protein response pathway; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005788 - endoplasmic reticulum lumen [Evidence IEA]; GO_component: GO:0005788 - endoplasmic reticulum lumen [Evidence IDA] [PMID 8654361]; GO_component: GO:0005788 - endoplasmic reticulum lumen [Evidence IDA] [PMID 8887673]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0005524 - ATP binding [Evidence IDA,IMP] [PMID 19759005]; GO_function: GO:0016887 - ATPase activity [Evidence IEA]; GO_function: GO:0000774 - adenyl-nucleotide exchange factor activity [Evidence IDA] [PMID 14704430]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0051082 - unfolded protein binding [Evidence IMP,IPI] [PMID 10409721]; GO_function: GO:0051082 - unfolded protein binding [Evidence IGI,IMP] [PMID 8654361]; GO_function: GO:0051082 - unfolded protein binding [Evidence IGI,IMP] [PMID 8887673]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0031204 - posttranslational protein targeting to membrane, translocation [Evidence IMP] [PMID 8654361]; GO_process: GO:0031204 - posttranslational protein targeting to membrane, translocation [Evidence IMP] [PMID 8887673]; GO_process: GO:0006986 - response to unfolded protein [Evidence IGI,IMP] [PMID 8654361]; GO_process: GO:0006986 - response to unfolded protein [Evidence IGI,IMP] [PMID 8887673]; Hsp70 family chaperone LHS1 204599 LHS1 30033904 LHS1 Sugiyamaella lignohabitans Hsp70 family chaperone LHS1 XP_018736924.1 201957 R 796027 CDS AWJ20_2038 30033905 206591..213319 B 1 NC_031674.1 Bifunctional carbamoylphosphate synthetase/aspartate transcarbamylase; catalyzes the first two enzymatic steps in the de novo biosynthesis of pyrimidines; both activities are subject to feedback inhibition by UTP; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11015727]; GO_component: GO:0016021 - integral component of membrane [Evidence IDA] [PMID 11921093]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016597 - amino acid binding [Evidence IEA]; GO_function: GO:0004070 - aspartate carbamoyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0004070 - aspartate carbamoyltransferase activity [Evidence IDA] [PMID 10446140]; GO_function: GO:0004070 - aspartate carbamoyltransferase activity [Evidence IMP] [PMID 4550660]; GO_function: GO:0004088 - carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity [Evidence IEA]; GO_function: GO:0004088 - carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity [Evidence IDA] [PMID 5776390]; GO_function: GO:0016743 - carboxyl- or carbamoyltransferase activity [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA,IEA]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0044205 - 'de novo' UMP biosynthetic process [Evidence IEA]; GO_process: GO:0006207 - 'de novo' pyrimidine nucleobase biosynthetic process [Evidence IEA]; GO_process: GO:0006207 - 'de novo' pyrimidine nucleobase biosynthetic process [Evidence IDA] [PMID 181668]; GO_process: GO:0006207 - 'de novo' pyrimidine nucleobase biosynthetic process [Evidence IMP] [PMID 4550660]; GO_process: GO:0070409 - carbamoyl phosphate biosynthetic process [Evidence IEA]; GO_process: GO:0006520 - cellular amino acid metabolic process [Evidence IEA]; GO_process: GO:0006543 - glutamine catabolic process [Evidence IEA]; GO_process: GO:0006541 - glutamine metabolic process [Evidence IDA] [PMID 5651325]; GO_process: GO:0008152 - metabolic process [Evidence IEA,IEA]; GO_process: GO:0045984 - negative regulation of pyrimidine nucleobase metabolic process [Evidence IDA] [PMID 5651325]; GO_process: GO:0006807 - nitrogen compound metabolic process [Evidence IEA]; GO_process: GO:0006221 - pyrimidine nucleotide biosynthetic process [Evidence IEA]; bifunctional carbamoylphosphate synthetase/aspartate transcarbamylase 213319 URA2 30033905 URA2 Sugiyamaella lignohabitans bifunctional carbamoylphosphate synthetase/aspartate transcarbamylase XP_018736925.1 206591 D 796027 CDS AWJ20_2039 30033906 214221..215399 B 1 NC_031674.1 uncharacterized protein 215399 30033906 AWJ20_2039 Sugiyamaella lignohabitans uncharacterized protein XP_018736926.1 214221 D 796027 CDS AWJ20_2040 30033908 218687..221182 B 1 NC_031674.1 Essential beta'-coat protein of the COPI coatomer; involved in ER-to-Golgi and Golgi-to-ER transport; contains WD40 domains that mediate cargo selective interactions; 45% sequence identity to mammalian beta'-COP; GO_component: GO:0030126 - COPI vesicle coat [Evidence IGI,ISS] [PMID 7929113]; GO_component: GO:0030663 - COPI-coated vesicle membrane [Evidence IEA]; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0031410 - cytoplasmic vesicle [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0030117 - membrane coat [Evidence IEA]; GO_function: GO:0005198 - structural molecule activity [Evidence IEA]; GO_function: GO:0043130 - ubiquitin binding [Evidence IDA] [PMID 21070969]; GO_process: GO:0006888 - ER to Golgi vesicle-mediated transport [Evidence IMP] [PMID 7929113]; GO_process: GO:0006886 - intracellular protein transport [Evidence IEA]; GO_process: GO:0032511 - late endosome to vacuole transport via multivesicular body sorting pathway [Evidence IMP,IPI] [PMID 17101773]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006890 - retrograde vesicle-mediated transport, Golgi to ER [Evidence IMP] [PMID 8001155]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IEA,IEA]; Sec27p 221182 SEC27 30033908 SEC27 Sugiyamaella lignohabitans Sec27p XP_018736927.1 218687 D 796027 CDS AWJ20_2041 30033909 221497..222978 B 1 NC_031674.1 uncharacterized protein 222978 30033909 AWJ20_2041 Sugiyamaella lignohabitans uncharacterized protein XP_018736928.1 221497 D 796027 CDS AWJ20_2042 30033910 complement(223075..223743) B 1 NC_031674.1 uncharacterized protein 223743 30033910 AWJ20_2042 Sugiyamaella lignohabitans uncharacterized protein XP_018736929.1 223075 R 796027 CDS AWJ20_2043 30033911 complement(225405..226148) B 1 NC_031674.1 uncharacterized protein 226148 30033911 AWJ20_2043 Sugiyamaella lignohabitans uncharacterized protein XP_018736930.1 225405 R 796027 CDS AWJ20_2044 30033912 complement(227499..229136) B 1 NC_031674.1 Plasma membrane transporter for choline, ethanolamine, and carnitine; involved in the uptake of nitrogen mustard and the uptake of glycine betaine during hypersaline stress; co-regulated with phospholipid biosynthetic genes and negatively regulated by choline and myo-inositol; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence ISS] [PMID 2203793]; GO_function: GO:1901235 - (R)-carnitine transmembrane transporter activity [Evidence IMP] [PMID 23755272]; GO_function: GO:0015171 - amino acid transmembrane transporter activity [Evidence IEA]; GO_function: GO:0015220 - choline transmembrane transporter activity [Evidence IMP] [PMID 2203793]; GO_function: GO:0015220 - choline transmembrane transporter activity [Evidence IGI] [PMID 3514579]; GO_function: GO:0034228 - ethanolamine transmembrane transporter activity [Evidence IGI] [PMID 3514579]; GO_process: GO:1900749 - (R)-carnitine transport [Evidence IMP] [PMID 23755272]; GO_process: GO:0003333 - amino acid transmembrane transport [Evidence IEA]; GO_process: GO:0006865 - amino acid transport [Evidence IEA,IEA]; GO_process: GO:0015871 - choline transport [Evidence IMP] [PMID 2203793]; GO_process: GO:0015871 - choline transport [Evidence IGI] [PMID 3514579]; GO_process: GO:0034229 - ethanolamine transport [Evidence IGI] [PMID 3514579]; GO_process: GO:0031460 - glycine betaine transport [Evidence IMP] [PMID 16487344]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Hnm1p 229136 HNM1 30033912 HNM1 Sugiyamaella lignohabitans Hnm1p XP_018736931.1 227499 R 796027 CDS AWJ20_2045 30033913 230964..231419 B 1 NC_031674.1 uncharacterized protein 231419 30033913 AWJ20_2045 Sugiyamaella lignohabitans uncharacterized protein XP_018736932.1 230964 D 796027 CDS AWJ20_2046 30033914 234659..235537 B 1 NC_031674.1 CTD phosphatase; dephosphorylates S5-P in the C-terminal domain of Rpo21p; has a cysteine-rich motif required for function and conserved in eukaryotes; shuttles between the nucleus and cytoplasm; RTR1 has a paralog, RTR2, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 18408053]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 18408053]; GO_function: GO:0008420 - CTD phosphatase activity [Evidence IDA] [PMID 19394294]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004721 - phosphoprotein phosphatase activity [Evidence IEA,IEA]; GO_process: GO:0070940 - dephosphorylation of RNA polymerase II C-terminal domain [Evidence IDA,IMP] [PMID 19394294]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IGI,IMP,IPI] [PMID 18408053]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Rtr1p 235537 RTR1 30033914 RTR1 Sugiyamaella lignohabitans Rtr1p XP_018736933.1 234659 D 796027 CDS AWJ20_2047 30033915 236924..238288 B 1 NC_031674.1 hexose transporter HXT13 238288 HXT13 30033915 HXT13 Sugiyamaella lignohabitans hexose transporter HXT13 XP_018736934.1 236924 D 796027 CDS AWJ20_2048 30033916 join(242372..242725,242918..244669) B 1 NC_031674.1 hypothetical protein; interacts with both the Reg1p/Glc7p phosphatase and the Snf1p kinase; forms cytoplasmic foci upon DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IPI] [PMID 10628972]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0042149 - cellular response to glucose starvation [Evidence IMP,IPI] [PMID 10628972]; Sip5p 244669 SIP5 30033916 SIP5 Sugiyamaella lignohabitans Sip5p XP_018736935.1 242372 D 796027 CDS AWJ20_2049 30033917 250855..252030 B 1 NC_031674.1 transcription factor HAC1 252030 HAC1 30033917 HAC1 Sugiyamaella lignohabitans transcription factor HAC1 XP_018736936.1 250855 D 796027 CDS AWJ20_2050 30033919 254820..256241 B 1 NC_031674.1 uncharacterized protein 256241 30033919 AWJ20_2050 Sugiyamaella lignohabitans uncharacterized protein XP_018736937.1 254820 D 796027 CDS AWJ20_2051 30033920 256745..257827 B 1 NC_031674.1 RNA export factor associated with the nuclear pore complex (NPC); associates with NUP116p; required for polyadenylated RNA export but not for protein import; homologous to S. pombe Rae1p and human RAE1; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 15210706]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0031965 - nuclear membrane [Evidence IEA]; GO_component: GO:0005643 - nuclear pore [Evidence IEA,IEA]; GO_component: GO:0005643 - nuclear pore [Evidence IDA] [PMID 10684247]; GO_component: GO:0005643 - nuclear pore [Evidence IDA] [PMID 8970155]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0051028 - mRNA transport [Evidence IEA]; GO_process: GO:0031081 - nuclear pore distribution [Evidence IMP] [PMID 9725905]; GO_process: GO:0016973 - poly(A)+ mRNA export from nucleus [Evidence IMP] [PMID 8970155]; GO_process: GO:0000973 - posttranscriptional tethering of RNA polymerase II gene DNA at nuclear periphery [Evidence IMP] [PMID 20932479]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:2000728 - regulation of mRNA export from nucleus in response to heat stress [Evidence IMP] [PMID 15210706]; GO_process: GO:0000972 - transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery [Evidence IMP] [PMID 20098417]; GO_process: GO:0000972 - transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery [Evidence IMP] [PMID 20932479]; GO_process: GO:0006810 - transport [Evidence IEA]; RNA export factor GLE2 257827 GLE2 30033920 GLE2 Sugiyamaella lignohabitans RNA export factor GLE2 XP_018736938.1 256745 D 796027 CDS AWJ20_2052 30033921 complement(258533..258823) B 1 NC_031674.1 Protein required for initiation of G0 program; prevents degradation of nutrient-regulated mRNAs via the 5'-3' mRNA decay pathway; phosphorylated by Rim15p; GFP protein localizes to the cytoplasm and nucleus; IGO2 has a paralog, IGO1, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0019208 - phosphatase regulator activity [Evidence IMP] [PMID 23861665]; GO_process: GO:0048255 - mRNA stabilization [Evidence IGI] [PMID 20471941]; Igo2p 258823 IGO2 30033921 IGO2 Sugiyamaella lignohabitans Igo2p XP_018736939.1 258533 R 796027 CDS AWJ20_2053 30033922 complement(264441..264833) B 1 NC_031674.1 Mitochondrial ribosomal protein of the small subunit; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0005763 - mitochondrial small ribosomal subunit [Evidence IPI] [PMID 12392552]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA,IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IPI] [PMID 12392552]; GO_process: GO:0032543 - mitochondrial translation [Evidence IC] [PMID 12392552]; GO_process: GO:0006412 - translation [Evidence IEA]; mitochondrial 37S ribosomal protein MRPS16 264833 MRPS16 30033922 MRPS16 Sugiyamaella lignohabitans mitochondrial 37S ribosomal protein MRPS16 XP_018736940.1 264441 R 796027 CDS AWJ20_2055 30033924 266084..268516 B 1 NC_031674.1 Dynamin-related GTPase involved in mitochondrial organization; required for mitochondrial fission and morphology; assembles on the cytoplasmic face of mitochondrial tubules at sites at which division will occur; also participates in endocytosis and regulating peroxisome abundance; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IEA,IEA]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IDA] [PMID 11038182]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005777 - peroxisome [Evidence IDA] [PMID 16968746]; GO_function: GO:0005525 - GTP binding [Evidence IEA,IEA]; GO_function: GO:0003924 - GTPase activity [Evidence IEA]; GO_function: GO:0003924 - GTPase activity [Evidence IDA] [PMID 16186251]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0042802 - identical protein binding [Evidence IDA] [PMID 16186251]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0042803 - protein homodimerization activity [Evidence IDA] [PMID 16186251]; GO_process: GO:0006184 - GTP catabolic process [Evidence IEA]; GO_process: GO:0001300 - chronological cell aging [Evidence IMP] [PMID 18298044]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0000266 - mitochondrial fission [Evidence IGI,IMP] [PMID 10559943]; GO_process: GO:0000001 - mitochondrion inheritance [Evidence IGI] [PMID 17336903]; GO_process: GO:0051646 - mitochondrion localization [Evidence IGI] [PMID 23341591]; GO_process: GO:0007005 - mitochondrion organization [Evidence IMP] [PMID 9786946]; GO_process: GO:0016559 - peroxisome fission [Evidence IGI] [PMID 18445678]; GO_process: GO:0007031 - peroxisome organization [Evidence IGI,IMP] [PMID 16968746]; GO_process: GO:0051260 - protein homooligomerization [Evidence IDA] [PMID 16186251]; dynamin-related GTPase DNM1 268516 DNM1 30033924 DNM1 Sugiyamaella lignohabitans dynamin-related GTPase DNM1 XP_018736941.1 266084 D 796027 CDS AWJ20_2056 30033925 complement(268605..269843) B 1 NC_031674.1 hypothetical protein; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies; null mutant displays reduced frequency of mitochondrial genome loss; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0051213 - dioxygenase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; Aim17p 269843 AIM17 30033925 AIM17 Sugiyamaella lignohabitans Aim17p XP_018736942.1 268605 R 796027 CDS AWJ20_2057 30033926 complement(271524..272657) B 1 NC_031674.1 H3 histone acetyltransferase RTT109 272657 RTT109 30033926 RTT109 Sugiyamaella lignohabitans H3 histone acetyltransferase RTT109 XP_018736943.1 271524 R 796027 CDS AWJ20_2058 30033927 complement(273377..273655) B 1 NC_031674.1 Beta 1 subunit of the 20S proteasome; responsible for cleavage after acidic residues in peptides; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IC] [PMID 9087403]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IC] [PMID 9087403]; GO_component: GO:0000502 - proteasome complex [Evidence IEA]; GO_component: GO:0005839 - proteasome core complex [Evidence IEA]; GO_component: GO:0019774 - proteasome core complex, beta-subunit complex [Evidence IDA] [PMID 9087403]; GO_component: GO:0034515 - proteasome storage granule [Evidence IDA] [PMID 18504300]; GO_function: GO:0004175 - endopeptidase activity [Evidence IEA]; GO_function: GO:0004175 - endopeptidase activity [Evidence IMP] [PMID 9207060]; GO_function: GO:0004175 - endopeptidase activity [Evidence IMP] [PMID 9312134]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_function: GO:0004298 - threonine-type endopeptidase activity [Evidence IEA,IEA]; GO_process: GO:0010499 - proteasomal ubiquitin-independent protein catabolic process [Evidence IDA] [PMID 19162040]; GO_process: GO:0043161 - proteasome-mediated ubiquitin-dependent protein catabolic process [Evidence IDA] [PMID 11545745]; GO_process: GO:0043161 - proteasome-mediated ubiquitin-dependent protein catabolic process [Evidence IDA] [PMID 19029916]; GO_process: GO:0006508 - proteolysis [Evidence IEA]; GO_process: GO:0051603 - proteolysis involved in cellular protein catabolic process [Evidence IEA]; proteasome core particle subunit beta 1 273655 PRE3 30033927 PRE3 Sugiyamaella lignohabitans proteasome core particle subunit beta 1 XP_018736944.1 273377 R 796027 CDS AWJ20_2059 30033928 274720..276381 B 1 NC_031674.1 translation initiation factor eIF3d Moe1 276381 moe1 30033928 moe1 Sugiyamaella lignohabitans translation initiation factor eIF3d Moe1 XP_018736945.1 274720 D 796027 CDS AWJ20_2060 30033930 complement(276531..279335) B 1 NC_031674.1 centrin-binding protein Sfi1 279335 30033930 AWJ20_2060 Sugiyamaella lignohabitans centrin-binding protein Sfi1 XP_018736946.1 276531 R 796027 CDS AWJ20_2061 30033931 280181..281587 B 1 NC_031674.1 Alpha subunit of the oligosaccharyltransferase complex of the ER lumen; complex catalyzes asparagine-linked glycosylation of newly synthesized proteins; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA,IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0008250 - oligosaccharyltransferase complex [Evidence IPI] [PMID 10358084]; GO_component: GO:0008250 - oligosaccharyltransferase complex [Evidence IPI] [PMID 16297388]; GO_component: GO:0008250 - oligosaccharyltransferase complex [Evidence IPI] [PMID 9405463]; GO_function: GO:0004579 - dolichyl-diphosphooligosaccharide-protein glycotransferase activity [Evidence IEA]; GO_function: GO:0004579 - dolichyl-diphosphooligosaccharide-protein glycotransferase activity [Evidence IDA] [PMID 9015380]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA]; GO_process: GO:0006487 - protein N-linked glycosylation [Evidence IDA] [PMID 9015380]; GO_process: GO:0018279 - protein N-linked glycosylation via asparagine [Evidence IPI] [PMID 9988747]; GO_process: GO:0006486 - protein glycosylation [Evidence IEA,IEA]; Ost1p 281587 OST1 30033931 OST1 Sugiyamaella lignohabitans Ost1p XP_018736947.1 280181 D 796027 CDS AWJ20_2062 30033932 complement(281858..283507) B 1 NC_031674.1 uncharacterized protein 283507 30033932 AWJ20_2062 Sugiyamaella lignohabitans uncharacterized protein XP_018736948.1 281858 R 796027 CDS AWJ20_2064 30033934 complement(285954..286562) B 1 NC_031674.1 Ferric reductase and cupric reductase; reduces siderophore-bound iron and oxidized copper prior to uptake by transporters; expression induced by low iron levels but not by low copper levels; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 8164662]; GO_function: GO:0052851 - ferric-chelate reductase (NADPH) activity [Evidence IEA]; GO_function: GO:0000293 - ferric-chelate reductase activity [Evidence IDA] [PMID 8164662]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_process: GO:0015677 - copper ion import [Evidence IDA] [PMID 9153234]; GO_process: GO:0006825 - copper ion transport [Evidence IEA]; GO_process: GO:0006811 - ion transport [Evidence IEA]; GO_process: GO:0055072 - iron ion homeostasis [Evidence IEA]; GO_process: GO:0006826 - iron ion transport [Evidence IDA] [PMID 8164662]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; Fre2p 286562 FRE2 30033934 FRE2 Sugiyamaella lignohabitans Fre2p XP_018736949.1 285954 R 796027 CDS AWJ20_2065 30033935 complement(288477..289481) B 1 NC_031674.1 uncharacterized protein 289481 30033935 AWJ20_2065 Sugiyamaella lignohabitans uncharacterized protein XP_018736950.1 288477 R 796027 CDS AWJ20_2066 30033936 292168..293631 B 1 NC_031674.1 uncharacterized protein 293631 30033936 AWJ20_2066 Sugiyamaella lignohabitans uncharacterized protein XP_018736951.1 292168 D 796027 CDS AWJ20_2067 30033937 complement(294890..295204) B 1 NC_031674.1 Cytoplasmic thioredoxin isoenzyme; part of thioredoxin system which protects cells against oxidative and reductive stress; forms LMA1 complex with Pbi2p; acts as a cofactor for Tsa1p; required for ER-Golgi transport and vacuole inheritance; with Trx2p, facilitates mitochondrial import of small Tims Tim9p, Tim10p, Tim13p by maintaining them in reduced form; abundance increases iunder DNA replication stress; TRX1 has a paralog, TRX2, that arose from the whole genome duplication; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 8603912]; GO_component: GO:0000324 - fungal-type vacuole [Evidence IPI] [PMID 9657146]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IEA]; GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IDA] [PMID 22984289]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0015036 - disulfide oxidoreductase activity [Evidence IDA] [PMID 19362171]; GO_function: GO:0015036 - disulfide oxidoreductase activity [Evidence ISS] [PMID 1988444]; GO_function: GO:0015035 - protein disulfide oxidoreductase activity [Evidence IEA]; GO_process: GO:0006888 - ER to Golgi vesicle-mediated transport [Evidence IDA] [PMID 9813082]; GO_process: GO:0045454 - cell redox homeostasis [Evidence IEA]; GO_process: GO:0045454 - cell redox homeostasis [Evidence TAS] [PMID 11169096]; GO_process: GO:0034599 - cellular response to oxidative stress [Evidence ISS] [PMID 1988444]; GO_process: GO:0009263 - deoxyribonucleotide biosynthetic process [Evidence IEA]; GO_process: GO:0006662 - glycerol ether metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; GO_process: GO:0080058 - protein deglutathionylation [Evidence IDA,IGI] [PMID 20074363]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006890 - retrograde vesicle-mediated transport, Golgi to ER [Evidence IDA] [PMID 9813082]; GO_process: GO:0042144 - vacuole fusion, non-autophagic [Evidence IDA] [PMID 9657146]; GO_process: GO:0000011 - vacuole inheritance [Evidence IMP] [PMID 8603912]; GO_process: GO:0000011 - vacuole inheritance [Evidence IMP] [PMID 9015301]; thioredoxin TRX1 295204 TRX1 30033937 TRX1 Sugiyamaella lignohabitans thioredoxin TRX1 XP_018736952.1 294890 R 796027 CDS AWJ20_2068 30033938 294927..295127 B 1 NC_031674.1 uncharacterized protein 295127 30033938 AWJ20_2068 Sugiyamaella lignohabitans uncharacterized protein XP_018736953.1 294927 D 796027 CDS AWJ20_2069 30033939 296328..296669 B 1 NC_031674.1 uncharacterized protein 296669 30033939 AWJ20_2069 Sugiyamaella lignohabitans uncharacterized protein XP_018736954.1 296328 D 796027 CDS AWJ20_2070 30033941 complement(301055..302038) B 1 NC_031674.1 uncharacterized protein 302038 30033941 AWJ20_2070 Sugiyamaella lignohabitans uncharacterized protein XP_018736955.1 301055 R 796027 CDS AWJ20_2071 30033942 303610..305703 B 1 NC_031674.1 Tryptophan synthase; catalyzes the last step of tryptophan biosynthesis; regulated by the general control system of amino acid biosynthesis; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016829 - lyase activity [Evidence IEA]; GO_function: GO:0004834 - tryptophan synthase activity [Evidence IEA,IEA]; GO_function: GO:0004834 - tryptophan synthase activity [Evidence IDA] [PMID 391563]; GO_function: GO:0004834 - tryptophan synthase activity [Evidence ISO] [PMID 6276387]; GO_function: GO:0004834 - tryptophan synthase activity [Evidence IDA] [PMID 6342605]; GO_process: GO:0009073 - aromatic amino acid family biosynthetic process [Evidence IEA]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0000162 - tryptophan biosynthetic process [Evidence IEA,IEA,IEA]; GO_process: GO:0000162 - tryptophan biosynthetic process [Evidence IMP] [PMID 10790693]; GO_process: GO:0006568 - tryptophan metabolic process [Evidence IEA]; tryptophan synthase TRP5 305703 TRP5 30033942 TRP5 Sugiyamaella lignohabitans tryptophan synthase TRP5 XP_018736956.1 303610 D 796027 CDS AWJ20_2072 30033943 305901..308699 B 1 NC_031674.1 uncharacterized protein 308699 30033943 AWJ20_2072 Sugiyamaella lignohabitans uncharacterized protein XP_018736957.1 305901 D 796027 CDS AWJ20_2073 30033944 309160..311664 B 1 NC_031674.1 Processing alpha glucosidase I; ER type II integral membrane N-glycoprotein involved in assembly of cell wall beta 1,6 glucan and asparagine-linked protein glycosylation; also involved in ER protein quality control and sensing of ER stress; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IDA] [PMID 8576053]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016798 - hydrolase activity, acting on glycosyl bonds [Evidence IEA]; GO_function: GO:0004573 - mannosyl-oligosaccharide glucosidase activity [Evidence IEA,IEA]; GO_function: GO:0004573 - mannosyl-oligosaccharide glucosidase activity [Evidence IDA] [PMID 14680956]; GO_function: GO:0004573 - mannosyl-oligosaccharide glucosidase activity [Evidence IMP,ISS] [PMID 9430631]; GO_process: GO:0009272 - fungal-type cell wall biogenesis [Evidence IMP] [PMID 9430631]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0009311 - oligosaccharide metabolic process [Evidence IEA]; GO_process: GO:0006487 - protein N-linked glycosylation [Evidence IMP] [PMID 9363442]; Cwh41p 311664 CWH41 30033944 CWH41 Sugiyamaella lignohabitans Cwh41p XP_018736958.1 309160 D 796027 CDS AWJ20_2074 30033945 complement(311800..312810) B 1 NC_031674.1 Putative vacuolar membrane transporter for cationic amino acids; likely contributes to amino acid homeostasis by exporting cationic amino acids from the vacuole; positive regulation by Lys14p suggests that lysine may be the primary substrate; member of the PQ-loop family, with seven transmembrane domains; similar to mammalian PQLC2 vacuolar transporter; RTC2 has a paralog, YPQ1, that arose from the whole genome duplication; GO_component: GO:0071627 - integral component of fungal-type vacuolar membrane [Evidence IDA] [PMID 23169667]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0031966 - mitochondrial membrane [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0015326 - cationic amino acid transmembrane transporter activity [Evidence IMP,ISA] [PMID 23169667]; GO_process: GO:0006865 - amino acid transport [Evidence IEA]; GO_process: GO:0034488 - basic amino acid transmembrane export from vacuole [Evidence IMP,ISA] [PMID 23169667]; GO_process: GO:0006810 - transport [Evidence IEA]; Rtc2p 312810 RTC2 30033945 RTC2 Sugiyamaella lignohabitans Rtc2p XP_018736959.1 311800 R 796027 CDS AWJ20_2075 30033946 314581..315369 B 1 NC_031674.1 Ribosomal 60S subunit protein L8B; required for processing of 27SA3 pre-rRNA to 27SB pre-rRNA during assembly of large ribosomal subunit; depletion leads to a turnover of pre-rRNA; L8 binds to Domain I of 25S and 5.8 S rRNAs; mutation results in decreased amounts of free 60S subunits; homologous to mammalian ribosomal protein L7A, no bacterial homolog; RPL8B has a paralog, RPL8A, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0022625 - cytosolic large ribosomal subunit [Evidence IDA] [PMID 11983894]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA,IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IC] [PMID 11983894]; GO_process: GO:0002181 - cytoplasmic translation [Evidence IC] [PMID 11983894]; GO_process: GO:0000470 - maturation of LSU-rRNA [Evidence IMP] [PMID 22893726]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; ribosomal 60S subunit protein L8B 315369 RPL8B 30033946 RPL8B Sugiyamaella lignohabitans ribosomal 60S subunit protein L8B XP_018736960.1 314581 D 796027 CDS AWJ20_2076 30033947 315607..317217 B 1 NC_031674.1 similar to Pantoea sp. aB, conserved hypothetical protein (NCBI: ZP_07377486.1); uncharacterized protein 317217 30033947 AWJ20_2076 Sugiyamaella lignohabitans uncharacterized protein XP_018736961.1 315607 D 796027 CDS AWJ20_2078 30033949 318406..319170 B 1 NC_031674.1 Ribosomal 60S subunit protein L2A; homologous to mammalian ribosomal protein L2 and bacterial L2; RPL2A has a paralog, RPL2B, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0022625 - cytosolic large ribosomal subunit [Evidence IDA] [PMID 18782943]; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 23212245]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA,IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0019843 - rRNA binding [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IDA] [PMID 18782943]; GO_process: GO:0002181 - cytoplasmic translation [Evidence IDA] [PMID 18782943]; GO_process: GO:0006412 - translation [Evidence IEA]; ribosomal 60S subunit protein L2A 319170 RPL2A 30033949 RPL2A Sugiyamaella lignohabitans ribosomal 60S subunit protein L2A XP_018736962.1 318406 D 796027 CDS AWJ20_2079 30033950 319897..323022 B 1 NC_031674.1 Subunit of the condensin complex; condensin reorganizes chromosomes during both mitosis and meiosis; essential SMC chromosomal ATPase family member that forms a subcomplex with Smc2p that has ATP-hydrolyzing and DNA-binding activity, but other condensin subunits are required for chromatin binding; required for clustering of tRNA genes at the nucleolus; GO_component: GO:0005694 - chromosome [Evidence IEA,IEA,IEA]; GO_component: GO:0000796 - condensin complex [Evidence IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0000799 - nuclear condensin complex [Evidence IDA] [PMID 10811823]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0003680 - AT DNA binding [Evidence IDA] [PMID 9727028]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0005524 - ATP binding [Evidence IDA] [PMID 9727028]; GO_function: GO:0016887 - ATPase activity [Evidence IDA] [PMID 12719426]; GO_function: GO:0000217 - DNA secondary structure binding [Evidence IDA] [PMID 9727028]; GO_function: GO:0003682 - chromatin binding [Evidence IDA] [PMID 16055730]; GO_function: GO:0003690 - double-stranded DNA binding [Evidence IDA] [PMID 9727028]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006310 - DNA recombination [Evidence IEA]; GO_process: GO:0006281 - DNA repair [Evidence IEA]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0030261 - chromosome condensation [Evidence IEA]; GO_process: GO:0051276 - chromosome organization [Evidence IEA]; GO_process: GO:0010032 - meiotic chromosome condensation [Evidence IC] [PMID 10811823]; GO_process: GO:0051307 - meiotic chromosome separation [Evidence IC] [PMID 10811823]; GO_process: GO:0007076 - mitotic chromosome condensation [Evidence IEA]; GO_process: GO:0007076 - mitotic chromosome condensation [Evidence IMP] [PMID 10811823]; GO_process: GO:0007067 - mitotic nuclear division [Evidence IEA]; GO_process: GO:0000070 - mitotic sister chromatid segregation [Evidence IMP] [PMID 10811823]; GO_process: GO:0070550 - rDNA condensation [Evidence IMP] [PMID 10811823]; GO_process: GO:0007130 - synaptonemal complex assembly [Evidence IC] [PMID 10811823]; GO_process: GO:0070058 - tRNA gene clustering [Evidence IMP] [PMID 18708579]; condensin subunit SMC2 323022 SMC2 30033950 SMC2 Sugiyamaella lignohabitans condensin subunit SMC2 XP_018736963.1 319897 D 796027 CDS AWJ20_2080 30033952 complement(join(323724..324203,324747..324818)) B 1 NC_031674.1 Subunit 6 of the ubiquinol cytochrome-c reductase complex; the complex, also known as the cytochrome bc(1) complex or Complex III, is a component of the mitochondrial inner membrane electron transport chain; highly acidic protein; required for maturation of cytochrome c1; may be loosely associated with the complex since it is easily released into the intermembrane space; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IDA] [PMID 22984289]; GO_component: GO:0005750 - mitochondrial respiratory chain complex III [Evidence IDA] [PMID 10873857]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 11914276]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0070469 - respiratory chain [Evidence IEA]; GO_function: GO:0008121 - ubiquinol-cytochrome-c reductase activity [Evidence IEA]; GO_function: GO:0008121 - ubiquinol-cytochrome-c reductase activity [Evidence IMP] [PMID 8288589]; GO_process: GO:0009060 - aerobic respiration [Evidence IMP] [PMID 8288589]; GO_process: GO:1902600 - hydrogen ion transmembrane transport [Evidence IEA]; GO_process: GO:0006122 - mitochondrial electron transport, ubiquinol to cytochrome c [Evidence IEA]; GO_process: GO:0006122 - mitochondrial electron transport, ubiquinol to cytochrome c [Evidence IMP] [PMID 8288589]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; ubiquinol--cytochrome-c reductase subunit 6 324818 QCR6 30033952 QCR6 Sugiyamaella lignohabitans ubiquinol--cytochrome-c reductase subunit 6 XP_018736964.1 323724 R 796027 CDS AWJ20_2081 30033953 complement(326465..327412) B 1 NC_031674.1 uncharacterized protein 327412 30033953 AWJ20_2081 Sugiyamaella lignohabitans uncharacterized protein XP_018736965.1 326465 R 796027 CDS AWJ20_2082 30033954 331036..332076 B 1 NC_031674.1 uncharacterized protein 332076 30033954 AWJ20_2082 Sugiyamaella lignohabitans uncharacterized protein XP_018736966.1 331036 D 796027 CDS AWJ20_2083 30033955 complement(332385..333455) B 1 NC_031674.1 uncharacterized protein 333455 30033955 AWJ20_2083 Sugiyamaella lignohabitans uncharacterized protein XP_018736967.1 332385 R 796027 CDS AWJ20_2084 30033956 334892..336025 B 1 NC_031674.1 Methionyl-tRNA formyltransferase; catalyzes the formylation of initiator Met-tRNA in mitochondria; potential Cdc28p substrate; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 5277072]; GO_function: GO:0016742 - hydroxymethyl-, formyl- and related transferase activity [Evidence IEA]; GO_function: GO:0004479 - methionyl-tRNA formyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0004479 - methionyl-tRNA formyltransferase activity [Evidence IMP] [PMID 10781559]; GO_function: GO:0004479 - methionyl-tRNA formyltransferase activity [Evidence IDA] [PMID 12549912]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0009058 - biosynthetic process [Evidence IEA]; GO_process: GO:0071951 - conversion of methionyl-tRNA to N-formyl-methionyl-tRNA [Evidence IEA]; GO_process: GO:0071951 - conversion of methionyl-tRNA to N-formyl-methionyl-tRNA [Evidence IMP] [PMID 10781559]; GO_process: GO:0071951 - conversion of methionyl-tRNA to N-formyl-methionyl-tRNA [Evidence IDA] [PMID 12549912]; GO_process: GO:0006412 - translation [Evidence IEA]; GO_process: GO:0006413 - translational initiation [Evidence IEA,IEA]; Fmt1p 336025 FMT1 30033956 FMT1 Sugiyamaella lignohabitans Fmt1p XP_018736968.1 334892 D 796027 CDS AWJ20_2085 30033957 complement(336117..338450) B 1 NC_031674.1 membrane morphogenesis protein VPS13 338450 VPS13 30033957 VPS13 Sugiyamaella lignohabitans membrane morphogenesis protein VPS13 XP_018736969.1 336117 R 796027 CDS AWJ20_2086 30033958 complement(339147..341327) B 1 NC_031674.1 membrane morphogenesis protein VPS13 341327 VPS13 30033958 VPS13 Sugiyamaella lignohabitans membrane morphogenesis protein VPS13 XP_018736970.1 339147 R 796027 CDS AWJ20_2087 30033959 complement(join(341788..341800,341872..345791,348364..348480)) B 1 NC_031674.1 membrane morphogenesis protein VPS13 348480 VPS13 30033959 VPS13 Sugiyamaella lignohabitans membrane morphogenesis protein VPS13 XP_018736971.1 341788 R 796027 CDS AWJ20_2088 30033960 347195..350866 B 1 NC_031674.1 ATP-dependent Lon protease; involved in degradation of misfolded proteins in mitochondria; required for biogenesis and maintenance of mitochondria; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA,IEA]; GO_component: GO:0005759 - mitochondrial matrix [Evidence IMP] [PMID 8146662]; GO_component: GO:0005759 - mitochondrial matrix [Evidence IMP] [PMID 8276800]; GO_component: GO:0042645 - mitochondrial nucleoid [Evidence IBA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA,IEA]; GO_function: GO:0004176 - ATP-dependent peptidase activity [Evidence IEA,IEA]; GO_function: GO:0004176 - ATP-dependent peptidase activity [Evidence IMP] [PMID 8146662]; GO_function: GO:0004176 - ATP-dependent peptidase activity [Evidence IMP] [PMID 8276800]; GO_function: GO:0016887 - ATPase activity [Evidence IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0070361 - mitochondrial light strand promoter anti-sense binding [Evidence IBA]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO_function: GO:0004252 - serine-type endopeptidase activity [Evidence IEA,IEA]; GO_function: GO:0008236 - serine-type peptidase activity [Evidence IEA]; GO_function: GO:0003697 - single-stranded DNA binding [Evidence IBA]; GO_function: GO:0003727 - single-stranded RNA binding [Evidence IBA]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA,IEA]; GO_process: GO:0034599 - cellular response to oxidative stress [Evidence IBA,IEA]; GO_process: GO:0051131 - chaperone-mediated protein complex assembly [Evidence IEA]; GO_process: GO:0051131 - chaperone-mediated protein complex assembly [Evidence IGI] [PMID 8810243]; GO_process: GO:0006515 - misfolded or incompletely synthesized protein catabolic process [Evidence IEA,IEA]; GO_process: GO:0006515 - misfolded or incompletely synthesized protein catabolic process [Evidence IMP] [PMID 16336126]; GO_process: GO:0006515 - misfolded or incompletely synthesized protein catabolic process [Evidence IGI,IMP] [PMID 7957078]; GO_process: GO:0007005 - mitochondrion organization [Evidence IBA]; GO_process: GO:0070407 - oxidation-dependent protein catabolic process [Evidence IBA,IEA]; GO_process: GO:0030163 - protein catabolic process [Evidence IEA]; GO_process: GO:0051260 - protein homooligomerization [Evidence IBA]; GO_process: GO:0006508 - proteolysis [Evidence IEA,IEA]; GO_process: GO:0090296 - regulation of mitochondrial DNA replication [Evidence IEA]; GO_process: GO:0001666 - response to hypoxia [Evidence IBA]; ATP-dependent Lon protease PIM1 350866 PIM1 30033960 PIM1 Sugiyamaella lignohabitans ATP-dependent Lon protease PIM1 XP_018736972.1 347195 D 796027 CDS AWJ20_2089 30033961 complement(350365..350730) B 1 NC_031674.1 uncharacterized protein 350730 30033961 AWJ20_2089 Sugiyamaella lignohabitans uncharacterized protein XP_018736973.1 350365 R 796027 CDS AWJ20_2090 30033963 351424..352278 B 1 NC_031674.1 Protein that interacts with Rab GTPases; localized to late Golgi vesicles; computational analysis of large-scale protein-protein interaction data suggests a possible role in vesicle-mediated transport; GO_component: GO:0005794 - Golgi apparatus [Evidence IDA] [PMID 17178117]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA,IEA]; GO_function: GO:0017137 - Rab GTPase binding [Evidence IPI] [PMID 11943201]; GO_process: GO:0008150 - biological_process [Evidence ND]; Yip5p 352278 YIP5 30033963 YIP5 Sugiyamaella lignohabitans Yip5p XP_018736974.1 351424 D 796027 CDS AWJ20_2091 30033964 complement(352506..354461) B 1 NC_031674.1 Vacuolar cation channel; mediates release of Ca(2+) from the vacuole in response to hyperosmotic shock; GO_component: GO:0000324 - fungal-type vacuole [Evidence IDA] [PMID 11427713]; GO_component: GO:0000324 - fungal-type vacuole [Evidence IDA] [PMID 11781332]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 20035756]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0005227 - calcium activated cation channel activity [Evidence IDA] [PMID 1700419]; GO_function: GO:0005262 - calcium channel activity [Evidence IEA]; GO_function: GO:0005262 - calcium channel activity [Evidence IDA] [PMID 11781332]; GO_function: GO:0005216 - ion channel activity [Evidence IEA]; GO_function: GO:0005267 - potassium channel activity [Evidence IDA] [PMID 1700419]; GO_function: GO:0005272 - sodium channel activity [Evidence IDA] [PMID 1700419]; GO_function: GO:0005244 - voltage-gated ion channel activity [Evidence IDA] [PMID 1700419]; GO_process: GO:0070588 - calcium ion transmembrane transport [Evidence IEA]; GO_process: GO:0006816 - calcium ion transport [Evidence IEA]; GO_process: GO:0030003 - cellular cation homeostasis [Evidence IDA,IMP] [PMID 11427713]; GO_process: GO:0030003 - cellular cation homeostasis [Evidence IDA,IMP] [PMID 11781332]; GO_process: GO:0006811 - ion transport [Evidence IEA,IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Yvc1p 354461 YVC1 30033964 YVC1 Sugiyamaella lignohabitans Yvc1p XP_018736975.1 352506 R 796027 CDS AWJ20_2092 30033965 356207..358228 B 1 NC_031674.1 Putative ortholog of human ETF-dH; found in a large supramolecular complex with other mitochondrial dehydrogenases; may have a role in oxidative stress response; ETF-dH is also known as electron transfer flavoprotein dehydrogenase; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA,IPI] [PMID 11502169]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO_function: GO:0004174 - electron-transferring-flavoprotein dehydrogenase activity [Evidence IEA,IEA]; GO_function: GO:0051536 - iron-sulfur cluster binding [Evidence IEA,IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; Cir2p 358228 CIR2 30033965 CIR2 Sugiyamaella lignohabitans Cir2p XP_018736976.1 356207 D 796027 CDS AWJ20_2093 30033966 360167..361426 B 1 NC_031674.1 Nicotinic acid mononucleotide adenylyltransferase; catalyzes the transfer of the adenylyl moiety of ATP to nicotinamide mononucleotide to form NAD; involved in pathways of NAD biosynthesis, including the de novo, NAD(+) salvage, and nicotinamide riboside salvage pathways; homolog of human NMNAT; NMA1 has a paralog, NMA2, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0000309 - nicotinamide-nucleotide adenylyltransferase activity [Evidence IEA]; GO_function: GO:0000309 - nicotinamide-nucleotide adenylyltransferase activity [Evidence IDA] [PMID 10428462]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016779 - nucleotidyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0009435 - NAD biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0009435 - NAD biosynthetic process [Evidence IDA] [PMID 10428462]; GO_process: GO:0009058 - biosynthetic process [Evidence IEA]; GO_process: GO:0019363 - pyridine nucleotide biosynthetic process [Evidence IEA]; nicotinamide-nucleotide adenylyltransferase NMA1 361426 NMA1 30033966 NMA1 Sugiyamaella lignohabitans nicotinamide-nucleotide adenylyltransferase NMA1 XP_018736977.1 360167 D 796027 CDS AWJ20_2094 30033967 367021..368586 B 1 NC_031674.1 uncharacterized protein 368586 30033967 AWJ20_2094 Sugiyamaella lignohabitans uncharacterized protein XP_018736978.1 367021 D 796027 CDS AWJ20_2095 30033968 complement(368795..371680) B 1 NC_031674.1 Essential subunit of the Pan2p-Pan3p poly(A)-ribonuclease complex; complex acts to control poly(A) tail length and regulate the stoichiometry and activity of postreplication repair complexes; GO_component: GO:0031251 - PAN complex [Evidence IDA] [PMID 8816488]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0004527 - exonuclease activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0004518 - nuclease activity [Evidence IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0004535 - poly(A)-specific ribonuclease activity [Evidence IEA]; GO_function: GO:0004535 - poly(A)-specific ribonuclease activity [Evidence IMP] [PMID 8550599]; GO_process: GO:0090503 - RNA phosphodiester bond hydrolysis, exonucleolytic [Evidence IEA]; GO_process: GO:0031124 - mRNA 3'-end processing [Evidence IMP,IPI] [PMID 8550599]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0006397 - mRNA processing [Evidence IMP,IPI] [PMID 8550599]; GO_process: GO:0090305 - nucleic acid phosphodiester bond hydrolysis [Evidence IEA,IEA]; GO_process: GO:0006301 - postreplication repair [Evidence IGI,IPI] [PMID 11953437]; Pan2p 371680 PAN2 30033968 PAN2 Sugiyamaella lignohabitans Pan2p XP_018736979.1 368795 R 796027 CDS AWJ20_2097 30033970 complement(377609..379693) B 1 NC_031674.1 Gamma glutamylcysteine synthetase; catalyzes the first step in glutathione (GSH) biosynthesis; expression induced by oxidants, cadmium, and mercury; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IBA]; GO_component: GO:0005622 - intracellular [Evidence IDA] [PMID 2184310]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0004357 - glutamate-cysteine ligase activity [Evidence IEA,IEA]; GO_function: GO:0004357 - glutamate-cysteine ligase activity [Evidence IDA] [PMID 1687097]; GO_function: GO:0004357 - glutamate-cysteine ligase activity [Evidence IMP] [PMID 2184310]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006750 - glutathione biosynthetic process [Evidence IEA,IEA,IEA]; GO_process: GO:0006750 - glutathione biosynthetic process [Evidence IDA] [PMID 1687097]; GO_process: GO:0006750 - glutathione biosynthetic process [Evidence IMP] [PMID 8768524]; GO_process: GO:0046686 - response to cadmium ion [Evidence IDA] [PMID 10921921]; GO_process: GO:0042542 - response to hydrogen peroxide [Evidence IMP] [PMID 7615092]; glutamate--cysteine ligase 379693 GSH1 30033970 GSH1 Sugiyamaella lignohabitans glutamate--cysteine ligase XP_018736980.1 377609 R 796027 CDS AWJ20_2098 30033971 390180..391613 B 1 NC_031674.1 Homeodomain-containing transcriptional repressor; regulates expression of PTR2, which encodes a major peptide transporter; imported peptides activate ubiquitin-dependent proteolysis, resulting in degradation of Cup9p and de-repression of PTR2 transcription; CUP9 has a paralog, TOS8, that arose from the whole genome duplication; protein abundance increases in response to DNA replication stress; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IC] [PMID 9427760]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0000978 - RNA polymerase II core promoter proximal region sequence-specific DNA binding [Evidence IDA] [PMID 9427760]; GO_function: GO:0001103 - RNA polymerase II repressing transcription factor binding [Evidence IPI] [PMID 18708352]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19111667]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19158363]; GO_function: GO:0003700 - sequence-specific DNA binding transcription factor activity [Evidence IEA]; GO_function: GO:0001133 - sequence-specific transcription regulatory region DNA binding RNA polymerase II transcription factor recruiting transcription factor activity [Evidence IC] [PMID 18708352]; GO_function: GO:0001133 - sequence-specific transcription regulatory region DNA binding RNA polymerase II transcription factor recruiting transcription factor activity [Evidence IC] [PMID 9427760]; GO_process: GO:0035955 - negative regulation of dipeptide transport by negative regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 10850718]; GO_process: GO:0035955 - negative regulation of dipeptide transport by negative regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 17005992]; GO_process: GO:0035955 - negative regulation of dipeptide transport by negative regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 18708352]; GO_process: GO:0035955 - negative regulation of dipeptide transport by negative regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 9427760]; GO_process: GO:0035952 - negative regulation of oligopeptide transport by negative regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 17005992]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; Cup9p 391613 CUP9 30033971 CUP9 Sugiyamaella lignohabitans Cup9p XP_018736981.1 390180 D 796027 CDS AWJ20_2099 30033972 complement(392070..394457) B 1 NC_031674.1 Component of the Rpd3L histone deacetylase complex; relieves transcriptional repression by binding to the Cyc8p-Tup1p corepressor and recruiting the SAGA complex to the repressed promoter; contains a PHD finger domain; GO_component: GO:0033698 - Rpd3L complex [Evidence IDA] [PMID 16286007]; GO_component: GO:0033698 - Rpd3L complex [Evidence IDA] [PMID 16286008]; GO_component: GO:0033698 - Rpd3L complex [Evidence IDA] [PMID 16314178]; GO_component: GO:0033698 - Rpd3L complex [Evidence IDA] [PMID 19040720]; GO_component: GO:0070210 - Rpd3L-Expanded complex [Evidence IDA] [PMID 19040720]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IC] [PMID 12086626]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0035064 - methylated histone binding [Evidence IDA] [PMID 17142463]; GO_function: GO:0008134 - transcription factor binding [Evidence IDA] [PMID 12086626]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0016568 - chromatin modification [Evidence IEA]; GO_process: GO:0061188 - negative regulation of chromatin silencing at rDNA [Evidence IMP] [PMID 16286008]; GO_process: GO:0061186 - negative regulation of chromatin silencing at silent mating-type cassette [Evidence IMP] [PMID 16286008]; GO_process: GO:0031939 - negative regulation of chromatin silencing at telomere [Evidence IMP] [PMID 16286008]; GO_process: GO:0045893 - positive regulation of transcription, DNA-templated [Evidence IMP] [PMID 12086626]; GO_process: GO:0030174 - regulation of DNA-dependent DNA replication initiation [Evidence IMP] [PMID 19417103]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Cti6p 394457 CTI6 30033972 CTI6 Sugiyamaella lignohabitans Cti6p XP_018736982.1 392070 R 796027 CDS AWJ20_2101 30033976 complement(395314..397683) B 1 NC_031674.1 Subunit of TORC1 (Tor1p or Tor2p-Kog1p-Lst8p-Tco89p); regulates global H3K56ac; TORC1 complex regulates growth in response to nutrient availability; cooperates with Ssd1p in the maintenance of cellular integrity; deletion strains are hypersensitive to rapamycin; GO_component: GO:0031931 - TORC1 complex [Evidence IPI] [PMID 14736892]; GO_component: GO:0031234 - extrinsic component of cytoplasmic side of plasma membrane [Evidence IDA] [PMID 14736892]; GO_component: GO:0000306 - extrinsic component of vacuolar membrane [Evidence IDA] [PMID 14736892]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 14562095]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 17560372]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0031929 - TOR signaling [Evidence IC] [PMID 14736892]; GO_process: GO:0031505 - fungal-type cell wall organization [Evidence IMP] [PMID 14736892]; GO_process: GO:0006071 - glycerol metabolic process [Evidence IGI] [PMID 10931309]; GO_process: GO:0001558 - regulation of cell growth [Evidence IPI] [PMID 14736892]; GO_process: GO:0009651 - response to salt stress [Evidence IMP] [PMID 17298473]; Tco89p 397683 TCO89 30033976 TCO89 Sugiyamaella lignohabitans Tco89p XP_018736983.1 395314 R 796027 CDS AWJ20_2102 30033977 399353..400633 B 1 NC_031674.1 Protein of the Sec1p/Munc-18 family; essential for vacuolar protein sorting; required for the function of Pep12p and the early endosome/late Golgi SNARE Tlg2p; essential for fusion of Golgi-derived vesicles with the prevacuolar compartment; GO_component: GO:0000139 - Golgi membrane [Evidence IDA] [PMID 7720726]; GO_component: GO:0031201 - SNARE complex [Evidence IPI] [PMID 10397773]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 9624182]; GO_component: GO:0019898 - extrinsic component of membrane [Evidence IDA] [PMID 7720726]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0000149 - SNARE binding [Evidence IPI] [PMID 16769821]; GO_function: GO:0051082 - unfolded protein binding [Evidence IMP,IPI] [PMID 11432826]; GO_process: GO:0032258 - CVT pathway [Evidence IMP] [PMID 10545112]; GO_process: GO:0006895 - Golgi to endosome transport [Evidence IGI] [PMID 9335586]; GO_process: GO:0006896 - Golgi to vacuole transport [Evidence IMP] [PMID 7720726]; GO_process: GO:0048210 - Golgi vesicle fusion to target membrane [Evidence IMP] [PMID 9650782]; GO_process: GO:0035543 - positive regulation of SNARE complex assembly [Evidence IMP] [PMID 11432826]; GO_process: GO:0006623 - protein targeting to vacuole [Evidence IMP] [PMID 7628704]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0007035 - vacuolar acidification [Evidence IMP] [PMID 7628704]; GO_process: GO:0000011 - vacuole inheritance [Evidence IMP] [PMID 1493335]; GO_process: GO:0007033 - vacuole organization [Evidence IMP] [PMID 9650782]; GO_process: GO:0006904 - vesicle docking involved in exocytosis [Evidence IEA]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IEA]; Vps45p 400633 VPS45 30033977 VPS45 Sugiyamaella lignohabitans Vps45p XP_018736984.1 399353 D 796027 CDS AWJ20_2103 30033978 complement(401313..401825) B 1 NC_031674.1 Small subunit of the heterodimeric cap binding complex with Sto1p; interacts with Npl3p, possibly to package mRNA for export from the nucleus; may have a role in telomere maintenance; contains an RNA-binding motif; GO_component: GO:0000243 - commitment complex [Evidence IDA] [PMID 8682299]; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005846 - nuclear cap binding complex [Evidence IEA]; GO_component: GO:0005846 - nuclear cap binding complex [Evidence IDA] [PMID 8811086]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0048471 - perinuclear region of cytoplasm [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0000339 - RNA cap binding [Evidence IEA]; GO_function: GO:0000339 - RNA cap binding [Evidence IDA,ISS] [PMID 8682299]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0008380 - RNA splicing [Evidence IEA]; GO_process: GO:0045292 - mRNA cis splicing, via spliceosome [Evidence IEA]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0000398 - mRNA splicing, via spliceosome [Evidence IMP] [PMID 8682299]; GO_process: GO:0051028 - mRNA transport [Evidence IEA]; GO_process: GO:0000184 - nuclear-transcribed mRNA catabolic process, nonsense-mediated decay [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Cbc2p 401825 CBC2 30033978 CBC2 Sugiyamaella lignohabitans Cbc2p XP_018736985.1 401313 R 796027 CDS AWJ20_2104 30033979 404526..406079 B 1 NC_031674.1 Cytosolic J-domain-containing protein; required for peroxisomal protein import and involved in peroxisome assembly, homologous to E. coli DnaJ; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 9679141]; GO_function: GO:0051087 - chaperone binding [Evidence ISS] [PMID 9679141]; GO_process: GO:0016558 - protein import into peroxisome matrix [Evidence IMP] [PMID 9679141]; Djp1p 406079 DJP1 30033979 DJP1 Sugiyamaella lignohabitans Djp1p XP_018736986.1 404526 D 796027 CDS AWJ20_2105 30033980 complement(406313..407005) B 1 NC_031674.1 uncharacterized protein 407005 30033980 AWJ20_2105 Sugiyamaella lignohabitans uncharacterized protein XP_018736987.1 406313 R 796027 CDS AWJ20_2106 30033981 complement(407804..409573) B 1 NC_031674.1 Uric acid-xanthine permease (UAPA transporter) 409573 30033981 AWJ20_2106 Sugiyamaella lignohabitans Uric acid-xanthine permease (UAPA transporter) XP_018736988.1 407804 R 796027 CDS AWJ20_2107 30033982 414602..416371 B 1 NC_031674.1 Cyclin-like protein that interacts with Pho85p; has sequence similarity to G1 cyclins PCL1 and PCL2; GO_component: GO:0000307 - cyclin-dependent protein kinase holoenzyme complex [Evidence IPI] [PMID 9032248]; GO_function: GO:0016538 - cyclin-dependent protein serine/threonine kinase regulator activity [Evidence ISA] [PMID 8212900]; GO_function: GO:0016538 - cyclin-dependent protein serine/threonine kinase regulator activity [Evidence IPI] [PMID 9032248]; GO_function: GO:0019901 - protein kinase binding [Evidence IEA]; GO_process: GO:0016239 - positive regulation of macroautophagy [Evidence IMP] [PMID 20417603]; GO_process: GO:0000079 - regulation of cyclin-dependent protein serine/threonine kinase activity [Evidence IEA]; Clg1p 416371 CLG1 30033982 CLG1 Sugiyamaella lignohabitans Clg1p XP_018736989.1 414602 D 796027 CDS AWJ20_2108 30033983 complement(416740..418065) B 1 NC_031674.1 Protein with 2-aminoadipate transaminase activity; shares amino acid similarity with the aminotransferases Aro8p and Aro9p; YER152C is not an essential gene; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0047536 - 2-aminoadipate transaminase activity [Evidence IDA] [PMID 19342587]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0030170 - pyridoxal phosphate binding [Evidence IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0009058 - biosynthetic process [Evidence IEA]; 2-aminoadipate transaminase 418065 30033983 AWJ20_2108 Sugiyamaella lignohabitans 2-aminoadipate transaminase XP_018736990.1 416740 R 796027 CDS AWJ20_2109 30033984 complement(418614..421067) B 1 NC_031674.1 Kinesin-related antiparallel sliding motor protein involved in mitotic spindle positioning; sliding activity promotes bipolar spindle assembly and maintenance of genome stability; also inhibits spindle elongation and promotes spindle disassembly in late anaphase; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005881 - cytoplasmic microtubule [Evidence IDA] [PMID 9693366]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA,IEA]; GO_component: GO:0005871 - kinesin complex [Evidence IEA]; GO_component: GO:0005871 - kinesin complex [Evidence TAS] [PMID 9153752]; GO_component: GO:0005874 - microtubule [Evidence IEA]; GO_component: GO:0005880 - nuclear microtubule [Evidence IDA] [PMID 9693366]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0008017 - microtubule binding [Evidence IEA]; GO_function: GO:0003777 - microtubule motor activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0008574 - plus-end-directed microtubule motor activity [Evidence IDA] [PMID 16906145]; GO_function: GO:0008574 - plus-end-directed microtubule motor activity [Evidence IDA] [PMID 16906148]; GO_function: GO:0070463 - tubulin-dependent ATPase activity [Evidence IDA] [PMID 16906148]; GO_process: GO:0000132 - establishment of mitotic spindle orientation [Evidence IMP] [PMID 16906148]; GO_process: GO:0000132 - establishment of mitotic spindle orientation [Evidence IGI,IMP] [PMID 9281582]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0007018 - microtubule-based movement [Evidence IEA]; GO_process: GO:0051228 - mitotic spindle disassembly [Evidence IMP] [PMID 23851487]; GO_process: GO:0051228 - mitotic spindle disassembly [Evidence IMP] [PMID 9813090]; GO_process: GO:0030472 - mitotic spindle organization in nucleus [Evidence IGI,IMP] [PMID 10525539]; GO_process: GO:0031115 - negative regulation of microtubule polymerization [Evidence IMP] [PMID 24616221]; GO_process: GO:0030473 - nuclear migration along microtubule [Evidence IMP] [PMID 9693366]; GO_process: GO:0070462 - plus-end specific microtubule depolymerization [Evidence IDA] [PMID 16906145]; GO_process: GO:0070462 - plus-end specific microtubule depolymerization [Evidence IDA] [PMID 16906148]; GO_process: GO:0032888 - regulation of mitotic spindle elongation [Evidence IMP] [PMID 24616221]; GO_process: GO:0090307 - spindle assembly involved in mitosis [Evidence IMP] [PMID 23851487]; tubulin-dependent ATPase KIP3 421067 KIP3 30033984 KIP3 Sugiyamaella lignohabitans tubulin-dependent ATPase KIP3 XP_018736991.1 418614 R 796027 CDS AWJ20_2110 30033986 join(423686..423807,424616..425777) B 1 NC_031674.1 Mitochondrial inner membrane insertase; mediates the insertion of both mitochondrial- and nuclear-encoded proteins from the matrix into the inner membrane; also has a role in insertion of carrier proteins into the inner membrane; acts as a voltage-gated ion channel, activated by substrate peptides; interacts with mitochondrial ribosomes; conserved from bacteria to animals; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0030061 - mitochondrial crista [Evidence IDA] [PMID 22513091]; GO_component: GO:0097002 - mitochondrial inner boundary membrane [Evidence IDA] [PMID 22513091]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005762 - mitochondrial large ribosomal subunit [Evidence IPI] [PMID 14657017]; GO_component: GO:0005762 - mitochondrial large ribosomal subunit [Evidence IPI] [PMID 19783770]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0005216 - ion channel activity [Evidence IDA] [PMID 22829595]; GO_function: GO:0032977 - membrane insertase activity [Evidence IMP] [PMID 9285818]; GO_function: GO:0032977 - membrane insertase activity [Evidence IMP] [PMID 9428747]; GO_function: GO:0097177 - mitochondrial ribosome binding [Evidence IDA] [PMID 14657018]; GO_process: GO:0000002 - mitochondrial genome maintenance [Evidence IGI,IMP] [PMID 18826960]; GO_process: GO:0033615 - mitochondrial proton-transporting ATP synthase complex assembly [Evidence IMP] [PMID 17344477]; GO_process: GO:0045039 - protein import into mitochondrial inner membrane [Evidence IMP] [PMID 22846909]; GO_process: GO:0051205 - protein insertion into membrane [Evidence IEA]; GO_process: GO:0032979 - protein insertion into mitochondrial membrane from inner side [Evidence IMP] [PMID 17452441]; GO_process: GO:0032979 - protein insertion into mitochondrial membrane from inner side [Evidence IMP] [PMID 9285818]; GO_process: GO:0032979 - protein insertion into mitochondrial membrane from inner side [Evidence IMP] [PMID 9428747]; GO_process: GO:0032979 - protein insertion into mitochondrial membrane from inner side [Evidence IMP,IPI] [PMID 9482871]; Oxa1p 425777 OXA1 30033986 OXA1 Sugiyamaella lignohabitans Oxa1p XP_018736992.1 423686 D 796027 CDS AWJ20_2111 30033987 complement(425996..427117) B 1 NC_031674.1 Peroxisomal matrix-localized lipase; required for normal peroxisome morphology; contains a peroxisomal targeting signal type 1 (PTS1) and a lipase motif; peroxisomal import requires the PTS1 receptor, Pex5p and self-interaction; transcriptionally activated by Yrm1p along with genes involved in multidrug resistance; oleic acid inducible; GO_component: GO:0005782 - peroxisomal matrix [Evidence IEA]; GO_component: GO:0005782 - peroxisomal matrix [Evidence IDA] [PMID 12135984]; GO_component: GO:0005777 - peroxisome [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016298 - lipase activity [Evidence IDA] [PMID 18199283]; GO_function: GO:0016298 - lipase activity [Evidence ISS] [PMID 9200815]; GO_function: GO:0004806 - triglyceride lipase activity [Evidence IDA] [PMID 24187129]; GO_process: GO:0007031 - peroxisome organization [Evidence IEP] [PMID 12135984]; GO_process: GO:0019433 - triglyceride catabolic process [Evidence IGI] [PMID 24187129]; Lpx1p 427117 LPX1 30033987 LPX1 Sugiyamaella lignohabitans Lpx1p XP_018736993.1 425996 R 796027 CDS AWJ20_2112 30033988 429657..431081 B 1 NC_031674.1 One of three possible beta-subunits of the Snf1 kinase complex; allows nuclear localization of the Snf1 kinase complex in the presence of a nonfermentable carbon source; contains glycogen-binding domain; GAL83 has a paralog, SIP2, that arose from the whole genome duplication; GO_component: GO:0031588 - AMP-activated protein kinase complex [Evidence IDA] [PMID 12393914]; GO_component: GO:0031588 - AMP-activated protein kinase complex [Evidence IPI] [PMID 7813428]; GO_component: GO:0031588 - AMP-activated protein kinase complex [Evidence IPI] [PMID 9121458]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 17237508]; GO_component: GO:0005641 - nuclear envelope lumen [Evidence IDA] [PMID 17237508]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11331606]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 17237508]; GO_function: GO:0004679 - AMP-activated protein kinase activity [Evidence IGI] [PMID 10990457]; GO_function: GO:0004679 - AMP-activated protein kinase activity [Evidence IMP] [PMID 7813428]; GO_process: GO:0007155 - cell adhesion [Evidence IMP] [PMID 12556493]; GO_process: GO:0001403 - invasive growth in response to glucose limitation [Evidence IMP] [PMID 12556493]; GO_process: GO:0006468 - protein phosphorylation [Evidence IGI] [PMID 10990457]; GO_process: GO:0043254 - regulation of protein complex assembly [Evidence IGI] [PMID 9121458]; GO_process: GO:0007165 - signal transduction [Evidence IGI] [PMID 10990457]; Gal83p 431081 GAL83 30033988 GAL83 Sugiyamaella lignohabitans Gal83p XP_018736994.1 429657 D 796027 CDS AWJ20_2113 30033989 435444..441317 B 1 NC_031674.1 Rho GTPase activating protein (RhoGAP); involved in the control of cytoskeleton organization and cellular morphogenesis; required for bud emergence; potential GAP for Rho4p; GO_component: GO:0005938 - cell cortex [Evidence IDA] [PMID 17914457]; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 17914457]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 17914457]; GO_component: GO:0000131 - incipient cellular bud site [Evidence IDA] [PMID 17914457]; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 17914457]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 17914457]; GO_component: GO:0005628 - prospore membrane [Evidence IDA] [PMID 24390141]; GO_function: GO:0005096 - GTPase activator activity [Evidence IEA]; GO_function: GO:0005100 - Rho GTPase activator activity [Evidence IDA] [PMID 7962098]; GO_function: GO:0005085 - guanyl-nucleotide exchange factor activity [Evidence IEA]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_process: GO:0030036 - actin cytoskeleton organization [Evidence IGI] [PMID 7579704]; GO_process: GO:0030010 - establishment of cell polarity [Evidence IC] [PMID 7579704]; GO_process: GO:0035024 - negative regulation of Rho protein signal transduction [Evidence IGI,IMP] [PMID 17914457]; GO_process: GO:0043547 - positive regulation of GTPase activity [Evidence IEA]; GO_process: GO:0043087 - regulation of GTPase activity [Evidence IEA]; GO_process: GO:0051056 - regulation of small GTPase mediated signal transduction [Evidence IEA]; GO_process: GO:0007165 - signal transduction [Evidence IEA]; GO_process: GO:0007264 - small GTPase mediated signal transduction [Evidence IEA]; Bem2p 441317 BEM2 30033989 BEM2 Sugiyamaella lignohabitans Bem2p XP_018736995.1 435444 D 796027 CDS AWJ20_2114 30033990 442341..443831 B 1 NC_031674.1 ERMES complex subunit MDM34 443831 MDM34 30033990 MDM34 Sugiyamaella lignohabitans ERMES complex subunit MDM34 XP_018736996.1 442341 D 796027 CDS AWJ20_2115 30033991 complement(444091..445053) B 1 NC_031674.1 uncharacterized protein 445053 30033991 AWJ20_2115 Sugiyamaella lignohabitans uncharacterized protein XP_018736997.1 444091 R 796027 CDS AWJ20_2116 30033992 complement(445482..448082) B 1 NC_031674.1 Putative acyltransferase with similarity to Eeb1p and Eht1p; has a minor role in medium-chain fatty acid ethyl ester biosynthesis; may be involved in lipid metabolism and detoxification; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016746 - transferase activity, transferring acyl groups [Evidence ISS] [PMID 16361250]; GO_process: GO:0051792 - medium-chain fatty acid biosynthetic process [Evidence IGI] [PMID 16361250]; putative carboxylic ester hydrolase 448082 30033992 AWJ20_2116 Sugiyamaella lignohabitans putative carboxylic ester hydrolase XP_018736998.1 445482 R 796027 CDS AWJ20_2117 30033993 450004..451929 B 1 NC_031674.1 Alpha subunit of succinyl-CoA ligase; succinyl-CoA ligase is a mitochondrial enzyme of the TCA cycle that catalyzes the nucleotide-dependent conversion of succinyl-CoA to succinate; phosphorylated; GO_component: GO:0042645 - mitochondrial nucleoid [Evidence IDA] [PMID 15692048]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 9874242]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0003878 - ATP citrate synthase activity [Evidence IEA]; GO_function: GO:0005525 - GTP binding [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0048037 - cofactor binding [Evidence IEA]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0004775 - succinate-CoA ligase (ADP-forming) activity [Evidence IEA,IEA]; GO_function: GO:0004775 - succinate-CoA ligase (ADP-forming) activity [Evidence IDA,IMP,ISS] [PMID 9874242]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0006104 - succinyl-CoA metabolic process [Evidence TAS] [PMID 9175438]; GO_process: GO:0006104 - succinyl-CoA metabolic process [Evidence IDA] [PMID 9874242]; GO_process: GO:0006099 - tricarboxylic acid cycle [Evidence IEA,IEA]; GO_process: GO:0006099 - tricarboxylic acid cycle [Evidence TAS] [PMID 9175438]; succinate--CoA ligase (GDP-forming) subunit alpha 451929 LSC1 30033993 LSC1 Sugiyamaella lignohabitans succinate--CoA ligase (GDP-forming) subunit alpha XP_018736999.1 450004 D 796027 CDS AWJ20_2118 30033994 complement(452244..453203) B 1 NC_031674.1 Putative GTP binding protein; negatively regulates Ran/Tc4 GTPase cycle; activates transcription; subunit of EGO and GSE complexes; required for sorting of Gap1p; localizes to cytoplasm and to chromatin; homolog of human RagC and RagD; GO_component: GO:0034448 - EGO complex [Evidence IPI] [PMID 15989961]; GO_component: GO:0034448 - EGO complex [Evidence IDA] [PMID 16732272]; GO_component: GO:1990131 - Gtr1-Gtr2 GTPase complex [Evidence IPI] [PMID 10388807]; GO_component: GO:1990131 - Gtr1-Gtr2 GTPase complex [Evidence IPI] [PMID 16143306]; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 10388807]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11073942]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 15989961]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0031902 - late endosome membrane [Evidence IDA] [PMID 16732272]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0000790 - nuclear chromatin [Evidence IDA] [PMID 18258182]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 10388807]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11073942]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0005525 - GTP binding [Evidence IEA,IEA]; GO_function: GO:0005525 - GTP binding [Evidence ISA] [PMID 10388807]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006914 - autophagy [Evidence IEA]; GO_process: GO:0016237 - microautophagy [Evidence IMP] [PMID 15989961]; GO_process: GO:0032008 - positive regulation of TOR signaling [Evidence IGI,IMP] [PMID 19748353]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IDA] [PMID 18258182]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Gtr2p 453203 GTR2 30033994 GTR2 Sugiyamaella lignohabitans Gtr2p XP_018737000.1 452244 R 796027 CDS AWJ20_2119 30033995 454004..454867 B 1 NC_031674.1 tRNA methyltransferase required for synthesis of wybutosine; a modified guanosine found at the 3'-position adjacent to the anticodon of phenylalanine tRNA which supports reading frame maintenance by stabilizing codon-anticodon interactions; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0008168 - methyltransferase activity [Evidence IEA]; GO_function: GO:0008175 - tRNA methyltransferase activity [Evidence IDA,IMP] [PMID 16642040]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0032259 - methylation [Evidence IEA]; GO_process: GO:0030488 - tRNA methylation [Evidence IDA,IMP] [PMID 16642040]; GO_process: GO:0008033 - tRNA processing [Evidence IEA]; GO_process: GO:0031591 - wybutosine biosynthetic process [Evidence IMP] [PMID 16642040]; GO_process: GO:0031591 - wybutosine biosynthetic process [Evidence IMP] [PMID 17150819]; Tyw3p 454867 TYW3 30033995 TYW3 Sugiyamaella lignohabitans Tyw3p XP_018737001.1 454004 D 796027 CDS AWJ20_2120 30033997 455207..456886 B 1 NC_031674.1 Aspartyl-tRNA synthetase, primarily cytoplasmic; homodimeric enzyme that catalyzes the specific aspartylation of tRNA(Asp); class II aminoacyl tRNA synthetase; binding to its own mRNA may confer autoregulation; shares five highly conserved amino acids with human that when mutated cause leukoencephalopathy characterized by hypomyelination with brain stem and spinal cord involvement and leg spasticity (HBSL); GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 16113655]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 16113655]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0003723 - RNA binding [Evidence IDA] [PMID 12888345]; GO_function: GO:0004812 - aminoacyl-tRNA ligase activity [Evidence IEA,IEA]; GO_function: GO:0004815 - aspartate-tRNA ligase activity [Evidence IEA,IEA]; GO_function: GO:0004815 - aspartate-tRNA ligase activity [Evidence IDA] [PMID 8263943]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_process: GO:0006422 - aspartyl-tRNA aminoacylation [Evidence IEA]; GO_process: GO:0006422 - aspartyl-tRNA aminoacylation [Evidence IDA] [PMID 8263943]; GO_process: GO:0006418 - tRNA aminoacylation for protein translation [Evidence IEA]; GO_process: GO:0006412 - translation [Evidence IEA]; aspartate--tRNA ligase DPS1 456886 DPS1 30033997 DPS1 Sugiyamaella lignohabitans aspartate--tRNA ligase DPS1 XP_018737002.1 455207 D 796027 CDS AWJ20_2121 30033998 460693..461982 B 1 NC_031674.1 uncharacterized protein 461982 30033998 AWJ20_2121 Sugiyamaella lignohabitans uncharacterized protein XP_018737003.1 460693 D 796027 CDS AWJ20_2122 30033999 462016..464856 B 1 NC_031674.1 Ras family guanine nucleotide exchange factor CDC25 464856 CDC25 30033999 CDC25 Sugiyamaella lignohabitans Ras family guanine nucleotide exchange factor CDC25 XP_018737004.1 462016 D 796027 CDS AWJ20_2123 30034000 complement(466522..467007) B 1 NC_031674.1 uncharacterized protein 467007 30034000 AWJ20_2123 Sugiyamaella lignohabitans uncharacterized protein XP_018737005.1 466522 R 796027 CDS AWJ20_2124 30034001 complement(468365..468910) B 1 NC_031674.1 Copper chaperone for superoxide dismutase Sod1p; involved in oxidative stress protection; Met-X-Cys-X2-Cys motif within the N-terminal portion is involved in insertion of copper into Sod1p under conditions of copper deprivation; required for regulation of yeast copper genes in response to DNA-damaging agents; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 9295278]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IDA] [PMID 11500508]; GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 18977757]; GO_function: GO:0046872 - metal ion binding [Evidence IEA,IEA]; GO_function: GO:0016532 - superoxide dismutase copper chaperone activity [Evidence IGI,IMP,ISS] [PMID 9295278]; GO_function: GO:0008270 - zinc ion binding [Evidence IBA]; GO_process: GO:0015680 - intracellular copper ion transport [Evidence IMP,ISS] [PMID 9295278]; GO_process: GO:0030001 - metal ion transport [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; GO_process: GO:0019430 - removal of superoxide radicals [Evidence IBA]; GO_process: GO:0006801 - superoxide metabolic process [Evidence IEA]; Ccs1p 468910 CCS1 30034001 CCS1 Sugiyamaella lignohabitans Ccs1p XP_018737006.1 468365 R 796027 CDS AWJ20_2125 30034002 470307..472679 B 1 NC_031674.1 Protein involved in vesicular transport; mediates transport between an endosomal compartment and the Golgi, contains a Golgi-localization (GRIP) domain that interacts with activated Arl1p-GTP to localize Imh1p to the Golgi; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0005794 - Golgi apparatus [Evidence IDA] [PMID 15077113]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 9880327]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0043001 - Golgi to plasma membrane protein transport [Evidence IMP] [PMID 16926193]; GO_process: GO:0000042 - protein targeting to Golgi [Evidence IEA]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006950 - response to stress [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IMP] [PMID 9880327]; Imh1p 472679 IMH1 30034002 IMH1 Sugiyamaella lignohabitans Imh1p XP_018737007.1 470307 D 796027 CDS AWJ20_2126 30034003 complement(472748..473860) B 1 NC_031674.1 Chitin deacetylase; together with Cda1p involved in the biosynthesis ascospore wall component, chitosan; required for proper rigidity of the ascospore wall; GO_component: GO:0005631 - chitosan layer of spore wall [Evidence ISS] [PMID 8940152]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0004099 - chitin deacetylase activity [Evidence IEA]; GO_function: GO:0004099 - chitin deacetylase activity [Evidence IDA,ISS] [PMID 8940152]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016810 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds [Evidence IEA]; GO_process: GO:0030476 - ascospore wall assembly [Evidence IDA,IMP] [PMID 8940152]; GO_process: GO:0005975 - carbohydrate metabolic process [Evidence IEA,IEA]; GO_process: GO:0006032 - chitin catabolic process [Evidence IEA]; GO_process: GO:0000272 - polysaccharide catabolic process [Evidence IEA]; GO_process: GO:0030435 - sporulation resulting in formation of a cellular spore [Evidence IEA]; chitin deacetylase CDA2 473860 CDA2 30034003 CDA2 Sugiyamaella lignohabitans chitin deacetylase CDA2 XP_018737008.1 472748 R 796027 CDS AWJ20_2127 30034004 474181..475200 B 1 NC_031674.1 NAD-dependent arabinose dehydrogenase; involved in biosynthesis of dehydro-D-arabinono-1,4-lactone; similar to plant L-galactose dehydrogenase; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0047816 - D-arabinose 1-dehydrogenase (NAD) activity [Evidence IEA]; GO_function: GO:0045290 - D-arabinose 1-dehydrogenase [NAD(P)+] activity [Evidence IDA,IMP] [PMID 17097644]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_process: GO:0070485 - dehydro-D-arabinono-1,4-lactone biosynthetic process [Evidence IMP] [PMID 17097644]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; D-arabinose 1-dehydrogenase (NAD(P)(+)) ARA2 475200 ARA2 30034004 ARA2 Sugiyamaella lignohabitans D-arabinose 1-dehydrogenase (NAD(P)(+)) ARA2 XP_018737009.1 474181 D 796027 CDS AWJ20_2128 30034005 complement(475553..476314) B 1 NC_031674.1 uncharacterized protein 476314 30034005 AWJ20_2128 Sugiyamaella lignohabitans uncharacterized protein XP_018737010.1 475553 R 796027 CDS AWJ20_2131 30034009 479962..481737 B 1 NC_031674.1 Regulator of phospholipase D (Spo14p); interacts with Spo14p and regulates its catalytic activity; capable of buffering the toxicity of C16:0 platelet activating factor, a lipid that accumulates intraneuronally in Alzheimer's patients; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0016042 - lipid catabolic process [Evidence IEA]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0043085 - positive regulation of catalytic activity [Evidence IMP] [PMID 21347278]; Srf1p 481737 SRF1 30034009 SRF1 Sugiyamaella lignohabitans Srf1p XP_018737011.1 479962 D 796027 CDS AWJ20_2132 30034010 483005..484786 B 1 NC_031674.1 Cullin; structural protein of SCF complexes (which also contain Skp1p, Cdc34p, Hrt1p and an F-box protein) involved in ubiquitination; SCF promotes the G1-S transition by targeting G1 cyclins and the Cln-CDK inhibitor Sic1p for degradation; GO_component: GO:0019005 - SCF ubiquitin ligase complex [Evidence IDA] [PMID 19882662]; GO_component: GO:0019005 - SCF ubiquitin ligase complex [Evidence IDA,IPI] [PMID 9346238]; GO_component: GO:0019005 - SCF ubiquitin ligase complex [Evidence IDA,IPI] [PMID 9346239]; GO_component: GO:0031461 - cullin-RING ubiquitin ligase complex [Evidence IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0003688 - DNA replication origin binding [Evidence IPI] [PMID 16421250]; GO_function: GO:0030674 - protein binding, bridging [Evidence IMP,IPI] [PMID 9499404]; GO_function: GO:0061630 - ubiquitin protein ligase activity [Evidence IDA] [PMID 9346238]; GO_function: GO:0031625 - ubiquitin protein ligase binding [Evidence IEA]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence IDA] [PMID 10385629]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence IDA] [PMID 9346239]; GO_process: GO:0000082 - G1/S transition of mitotic cell cycle [Evidence IMP] [PMID 8943317]; GO_process: GO:0000086 - G2/M transition of mitotic cell cycle [Evidence IGI] [PMID 7954792]; GO_process: GO:0000086 - G2/M transition of mitotic cell cycle [Evidence IGI] [PMID 9736614]; GO_process: GO:0031146 - SCF-dependent proteasomal ubiquitin-dependent protein catabolic process [Evidence IDA] [PMID 9346238]; GO_process: GO:0031146 - SCF-dependent proteasomal ubiquitin-dependent protein catabolic process [Evidence IDA] [PMID 9346239]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0042787 - protein ubiquitination involved in ubiquitin-dependent protein catabolic process [Evidence IDA] [PMID 9346238]; GO_process: GO:0042787 - protein ubiquitination involved in ubiquitin-dependent protein catabolic process [Evidence IDA] [PMID 9346239]; GO_process: GO:0006511 - ubiquitin-dependent protein catabolic process [Evidence IEA]; cullin CDC53 484786 CDC53 30034010 CDC53 Sugiyamaella lignohabitans cullin CDC53 XP_018737012.1 483005 D 796027 CDS AWJ20_2133 30034011 complement(484899..488738) B 1 NC_031674.1 Meiosis-specific protein required for spore wall formation; localizes to prospore membrane (PSM) and is required for PSM closure during sporulation; mediates PSM size; interacts with Spo1p and Vps13p and recruits Vps13p to the PSM during sporulation; mutants exhibit reduction in PSM PtdIns-phosphate pools; dispensable for both nuclear divisions during meiosis; contains two PH domains; GO_component: GO:0005628 - prospore membrane [Evidence IDA] [PMID 24036347]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0030476 - ascospore wall assembly [Evidence IMP] [PMID 22611022]; GO_process: GO:0030476 - ascospore wall assembly [Evidence IEP,IMP] [PMID 9784122]; GO_process: GO:1902657 - protein localization to prospore membrane [Evidence IDA] [PMID 24036347]; GO_process: GO:0030435 - sporulation resulting in formation of a cellular spore [Evidence IEA]; Spo71p 488738 SPO71 30034011 SPO71 Sugiyamaella lignohabitans Spo71p XP_018737013.1 484899 R 796027 CDS AWJ20_2134 30034012 complement(489511..490152) B 1 NC_031674.1 Subunit 5 of the stator stalk of mitochondrial F1F0 ATP synthase; F1F0 ATP synthase is a large, evolutionarily conserved enzyme complex required for ATP synthesis; homologous to bovine subunit OSCP (oligomycin sensitivity-conferring protein); phosphorylated; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005753 - mitochondrial proton-transporting ATP synthase complex [Evidence IDA] [PMID 10066811]; GO_component: GO:0000274 - mitochondrial proton-transporting ATP synthase, stator stalk [Evidence IMP,ISS] [PMID 2146269]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0046933 - proton-transporting ATP synthase activity, rotational mechanism [Evidence IEA]; GO_function: GO:0046933 - proton-transporting ATP synthase activity, rotational mechanism [Evidence IDA] [PMID 20691145]; GO_function: GO:0046933 - proton-transporting ATP synthase activity, rotational mechanism [Evidence IMP] [PMID 7866306]; GO_process: GO:0006754 - ATP biosynthetic process [Evidence IEA]; GO_process: GO:0015986 - ATP synthesis coupled proton transport [Evidence IEA]; GO_process: GO:0015986 - ATP synthesis coupled proton transport [Evidence IMP] [PMID 15254373]; GO_process: GO:0015986 - ATP synthesis coupled proton transport [Evidence IDA] [PMID 20691145]; GO_process: GO:0015986 - ATP synthesis coupled proton transport [Evidence IMP,ISS] [PMID 2146269]; GO_process: GO:0006811 - ion transport [Evidence IEA]; GO_process: GO:0015992 - proton transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; F1F0 ATP synthase subunit 5 490152 ATP5 30034012 ATP5 Sugiyamaella lignohabitans F1F0 ATP synthase subunit 5 XP_018737014.1 489511 R 796027 CDS AWJ20_2135 30034013 490818..492041 B 1 NC_031674.1 Mitochondrial ribosomal protein of the large subunit (L2); has similarity to E. coli L2 ribosomal protein; mutant allele (fat21) causes inability to utilize oleate, and induce oleic acid oxidation; may interfere with activity of the Adr1p transcription factor; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0015934 - large ribosomal subunit [Evidence IEA]; GO_component: GO:0005762 - mitochondrial large ribosomal subunit [Evidence IDA] [PMID 9445368]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA,IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IDA] [PMID 9445368]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0032543 - mitochondrial translation [Evidence IMP] [PMID 9079633]; GO_process: GO:0006412 - translation [Evidence IEA]; mitochondrial 54S ribosomal protein RML2 492041 RML2 30034013 RML2 Sugiyamaella lignohabitans mitochondrial 54S ribosomal protein RML2 XP_018737015.1 490818 D 796027 CDS AWJ20_2136 30034014 complement(492244..494664) B 1 NC_031674.1 Zinc cluster protein proposed to be a transcriptional regulator; regulator involved in the stress response; null mutants have a respiratory deficiency, calcofluor white sensitivity and slightly increased cycloheximide resistance; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19111667]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19158363]; GO_function: GO:0000981 - sequence-specific DNA binding RNA polymerase II transcription factor activity [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence IEA]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA,IEA]; GO_process: GO:0006950 - response to stress [Evidence IEA]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA,IEA]; Asg1p 494664 ASG1 30034014 ASG1 Sugiyamaella lignohabitans Asg1p XP_018737016.1 492244 R 796027 CDS AWJ20_2137 30034015 499144..500355 B 1 NC_031674.1 Putative cysteine synthase; localized to the mitochondrial outer membrane; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IDA] [PMID 16407407]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0004124 - cysteine synthase activity [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0019344 - cysteine biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0006535 - cysteine biosynthetic process from serine [Evidence IEA]; putative cysteine synthase 500355 30034015 AWJ20_2137 Sugiyamaella lignohabitans putative cysteine synthase XP_018737017.1 499144 D 796027 CDS AWJ20_2138 30034016 502421..504133 B 1 NC_031674.1 uncharacterized protein 504133 30034016 AWJ20_2138 Sugiyamaella lignohabitans uncharacterized protein XP_018737018.1 502421 D 796027 CDS AWJ20_2139 30034017 complement(504214..506610) B 1 NC_031674.1 Member of the NineTeen Complex (NTC); that contains Prp19p and stabilizes U6 snRNA in catalytic forms of the spliceosome containing U2, U5, and U6 snRNAs; null mutant has splicing defect and arrests in G2/M; relocalizes to the cytosol in response to hypoxia; homologs in human and C. elegans; GO_component: GO:0000974 - Prp19 complex [Evidence IDA] [PMID 11842115]; GO_component: GO:0071006 - U2-type catalytic step 1 spliceosome [Evidence IDA] [PMID 11105756]; GO_component: GO:0071006 - U2-type catalytic step 1 spliceosome [Evidence IDA] [PMID 11842115]; GO_component: GO:0071007 - U2-type catalytic step 2 spliceosome [Evidence IDA] [PMID 11105756]; GO_component: GO:0071008 - U2-type post-mRNA release spliceosomal complex [Evidence IDA] [PMID 11105756]; GO_component: GO:0071004 - U2-type prespliceosome [Evidence IDA] [PMID 11105756]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 22932476]; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22932476]; GO_component: GO:0005681 - spliceosomal complex [Evidence IEA]; GO_function: GO:0000384 - first spliceosomal transesterification activity [Evidence IC] [PMID 11105756]; GO_function: GO:0000384 - first spliceosomal transesterification activity [Evidence IC] [PMID 11842115]; GO_function: GO:0000386 - second spliceosomal transesterification activity [Evidence IC] [PMID 11105756]; GO_process: GO:0006396 - RNA processing [Evidence IEA]; GO_process: GO:0008380 - RNA splicing [Evidence IEA]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0000349 - generation of catalytic spliceosome for first transesterification step [Evidence IDA] [PMID 19617314]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; Syf1p 506610 SYF1 30034017 SYF1 Sugiyamaella lignohabitans Syf1p XP_018737019.1 504214 R 796027 CDS AWJ20_2140 30034019 507240..508622 B 1 NC_031674.1 Vacuolar aminopeptidase yscI; zinc metalloproteinase that belongs to the peptidase family M18; often used as a marker protein in studies of autophagy and cytosol to vacuole targeting (CVT) pathway; protein increases in abundance and relative distribution to cytoplasmic foci increases upon DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0000324 - fungal-type vacuole [Evidence IDA] [PMID 1400574]; GO_component: GO:0005773 - vacuole [Evidence IEA,IEA]; GO_function: GO:0004177 - aminopeptidase activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0070006 - metalloaminopeptidase activity [Evidence IDA] [PMID 3882418]; GO_function: GO:0008237 - metallopeptidase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0006508 - proteolysis [Evidence IEA,IEA]; GO_process: GO:0007039 - vacuolar protein catabolic process [Evidence ISS] [PMID 2651436]; GO_process: GO:0007039 - vacuolar protein catabolic process [Evidence ISS] [PMID 2689224]; Ape1p 508622 APE1 30034019 APE1 Sugiyamaella lignohabitans Ape1p XP_018737020.1 507240 D 796027 CDS AWJ20_2141 30034020 complement(508767..510092) B 1 NC_031674.1 Nuclear pore-associated protein; component of TREX-2 complex (Sac3p-Thp1p-Sus1p-Cdc31p) involved in transcription elongation and mRNA export from the nucleus; involved in post-transcriptional tethering of active genes to the nuclear periphery and to non-nascent mRNP; contains a PAM domain implicated in protein-protein binding; GO_component: GO:0005635 - nuclear envelope [Evidence IEA]; GO_component: GO:0005635 - nuclear envelope [Evidence IDA] [PMID 12206772]; GO_component: GO:0005643 - nuclear pore [Evidence IDA,IGI] [PMID 12411502]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11139493]; GO_component: GO:0070390 - transcription export complex 2 [Evidence IDA] [PMID 15311284]; GO_function: GO:0003723 - RNA binding [Evidence IDA] [PMID 12702719]; GO_function: GO:0003690 - double-stranded DNA binding [Evidence IDA] [PMID 12702719]; GO_process: GO:0000282 - cellular bud site selection [Evidence IMP] [PMID 11452010]; GO_process: GO:0031124 - mRNA 3'-end processing [Evidence IMP] [PMID 18614048]; GO_process: GO:0006406 - mRNA export from nucleus [Evidence IMP] [PMID 12411502]; GO_process: GO:0051028 - mRNA transport [Evidence IEA]; GO_process: GO:0071033 - nuclear retention of pre-mRNA at the site of transcription [Evidence IMP] [PMID 18003937]; GO_process: GO:0000973 - posttranscriptional tethering of RNA polymerase II gene DNA at nuclear periphery [Evidence IMP] [PMID 18003937]; GO_process: GO:0006368 - transcription elongation from RNA polymerase II promoter [Evidence IMP] [PMID 11139493]; GO_process: GO:0006283 - transcription-coupled nucleotide-excision repair [Evidence IMP] [PMID 17537816]; GO_process: GO:0006810 - transport [Evidence IEA]; Thp1p 510092 THP1 30034020 THP1 Sugiyamaella lignohabitans Thp1p XP_018737021.1 508767 R 796027 CDS AWJ20_2142 30034021 510271..511653 B 1 NC_031674.1 uncharacterized protein 511653 30034021 AWJ20_2142 Sugiyamaella lignohabitans uncharacterized protein XP_018737022.1 510271 D 796027 CDS AWJ20_2143 30034022 complement(512040..512807) B 1 NC_031674.1 uncharacterized protein 512807 30034022 AWJ20_2143 Sugiyamaella lignohabitans uncharacterized protein XP_018737023.1 512040 R 796027 CDS AWJ20_2144 30034023 514387..515328 B 1 NC_031674.1 Type 2A-related serine-threonine phosphatase; functions in the G1/S transition of the mitotic cycle; regulator of COPII coat dephosphorylation; required for ER to Golgi traffic; interacts with Hrr25p kinase; cytoplasmic and nuclear protein that modulates functions mediated by Pkc1p including cell wall and actin cytoskeleton organization; similar to human PP6; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 1848673]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA,IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004721 - phosphoprotein phosphatase activity [Evidence IEA,IEA]; GO_function: GO:0004722 - protein serine/threonine phosphatase activity [Evidence IMP] [PMID 23864707]; GO_process: GO:0006281 - DNA repair [Evidence IMP] [PMID 15150670]; GO_process: GO:0000082 - G1/S transition of mitotic cell cycle [Evidence IGI] [PMID 1848673]; GO_process: GO:0031929 - TOR signaling [Evidence IMP] [PMID 15367655]; GO_process: GO:0030036 - actin cytoskeleton organization [Evidence IMP] [PMID 12080055]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0034599 - cellular response to oxidative stress [Evidence IMP] [PMID 18357452]; GO_process: GO:0016311 - dephosphorylation [Evidence IMP] [PMID 15367655]; GO_process: GO:0031505 - fungal-type cell wall organization [Evidence IMP] [PMID 12080055]; GO_process: GO:0035556 - intracellular signal transduction [Evidence IMP] [PMID 12080055]; GO_process: GO:0007067 - mitotic nuclear division [Evidence IEA]; GO_process: GO:0001302 - replicative cell aging [Evidence IMP] [PMID 15843932]; GO_process: GO:0002098 - tRNA wobble uridine modification [Evidence IMP] [PMID 18755837]; type 2A-related serine/threonine-protein phosphatase SIT4 515328 SIT4 30034023 SIT4 Sugiyamaella lignohabitans type 2A-related serine/threonine-protein phosphatase SIT4 XP_018737024.1 514387 D 796027 CDS AWJ20_2145 30034024 complement(517358..518506) B 1 NC_031674.1 Peroxisomal matrix-localized lipase; required for normal peroxisome morphology; contains a peroxisomal targeting signal type 1 (PTS1) and a lipase motif; peroxisomal import requires the PTS1 receptor, Pex5p and self-interaction; transcriptionally activated by Yrm1p along with genes involved in multidrug resistance; oleic acid inducible; GO_component: GO:0005782 - peroxisomal matrix [Evidence IEA]; GO_component: GO:0005782 - peroxisomal matrix [Evidence IDA] [PMID 12135984]; GO_component: GO:0005777 - peroxisome [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016298 - lipase activity [Evidence IDA] [PMID 18199283]; GO_function: GO:0016298 - lipase activity [Evidence ISS] [PMID 9200815]; GO_function: GO:0004806 - triglyceride lipase activity [Evidence IDA] [PMID 24187129]; GO_process: GO:0007031 - peroxisome organization [Evidence IEP] [PMID 12135984]; GO_process: GO:0019433 - triglyceride catabolic process [Evidence IGI] [PMID 24187129]; Lpx1p 518506 LPX1 30034024 LPX1 Sugiyamaella lignohabitans Lpx1p XP_018737025.1 517358 R 796027 CDS AWJ20_2146 30034025 complement(519024..519986) B 1 NC_031674.1 uncharacterized protein 519986 30034025 AWJ20_2146 Sugiyamaella lignohabitans uncharacterized protein XP_018737026.1 519024 R 796027 CDS AWJ20_2147 30034026 complement(521272..522444) B 1 NC_031674.1 uncharacterized protein 522444 30034026 AWJ20_2147 Sugiyamaella lignohabitans uncharacterized protein XP_018737027.1 521272 R 796027 CDS AWJ20_2148 30034027 complement(523091..524659) B 1 NC_031674.1 hexose transporter HXT13 524659 HXT13 30034027 HXT13 Sugiyamaella lignohabitans hexose transporter HXT13 XP_018737028.1 523091 R 796027 CDS AWJ20_2149 30034028 525656..526498 B 1 NC_031674.1 ER membrane protein involved in the second step of GPI anchor assembly; the second step is the de-N-acetylation of the N-acetylglucosaminylphosphatidylinositol intermediate; functional homolog of human PIG-Lp; GPI stands for glycosylphosphatidylinositol; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence ISS] [PMID 10085243]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0000225 - N-acetylglucosaminylphosphatidylinositol deacetylase activity [Evidence IEA]; GO_function: GO:0000225 - N-acetylglucosaminylphosphatidylinositol deacetylase activity [Evidence ISS] [PMID 10085243]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_process: GO:0006506 - GPI anchor biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0006506 - GPI anchor biosynthetic process [Evidence ISS] [PMID 10085243]; Gpi12p 526498 GPI12 30034028 GPI12 Sugiyamaella lignohabitans Gpi12p XP_018737029.1 525656 D 796027 CDS AWJ20_2150 30034030 complement(526666..528402) B 1 NC_031674.1 uncharacterized protein 528402 30034030 AWJ20_2150 Sugiyamaella lignohabitans uncharacterized protein XP_018737030.1 526666 R 796027 CDS AWJ20_2151 30034031 complement(528970..532134) B 1 NC_031674.1 Translational elongation factor EF-3; member of the ABC superfamily; stimulates EF-1 alpha-dependent binding of aminoacyl-tRNA by the ribosome; normally expressed in zinc deficient cells; HEF3 has a paralog, YEF3, that arose from the whole genome duplication; GO_component: GO:0022626 - cytosolic ribosome [Evidence IPI] [PMID 9544245]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016887 - ATPase activity [Evidence IEA]; GO_function: GO:0016887 - ATPase activity [Evidence IDA] [PMID 9544245]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_function: GO:0003746 - translation elongation factor activity [Evidence IEA]; GO_function: GO:0003746 - translation elongation factor activity [Evidence IGI,ISS] [PMID 9544245]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0006412 - translation [Evidence IEA]; GO_process: GO:0006414 - translational elongation [Evidence IEA,IEA]; GO_process: GO:0006414 - translational elongation [Evidence IGI] [PMID 9544245]; translation elongation factor EF-3 532134 YEF3 30034031 YEF3 Sugiyamaella lignohabitans translation elongation factor EF-3 XP_018737031.1 528970 R 796027 CDS AWJ20_2153 30034033 complement(535972..537381) B 1 NC_031674.1 serine/threonine protein kinase RCK2 537381 RCK2 30034033 RCK2 Sugiyamaella lignohabitans serine/threonine protein kinase RCK2 XP_018737032.1 535972 R 796027 CDS AWJ20_2154 30034034 complement(537421..538278) B 1 NC_031674.1 uncharacterized protein 538278 30034034 AWJ20_2154 Sugiyamaella lignohabitans uncharacterized protein XP_018737033.1 537421 R 796027 CDS AWJ20_2155 30034035 541873..543564 B 1 NC_031674.1 Protein with a role in cellular adhesion and filamentous growth; also endosome-to-vacuole sorting; similar to Tmn3p; member of Transmembrane Nine family of proteins with 9 transmembrane segments; EMP70 has a paralog, TMN2, that arose from the whole genome duplication; GO_component: GO:0005768 - endosome [Evidence IEA]; GO_component: GO:0005768 - endosome [Evidence IDA] [PMID 8314797]; GO_component: GO:0010008 - endosome membrane [Evidence IEA]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 20681974]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006878 - cellular copper ion homeostasis [Evidence IGI,IMP] [PMID 20681974]; GO_process: GO:0016197 - endosomal transport [Evidence IMP] [PMID 20526336]; GO_process: GO:0001403 - invasive growth in response to glucose limitation [Evidence IMP] [PMID 18178563]; GO_process: GO:0007124 - pseudohyphal growth [Evidence IGI] [PMID 18178563]; GO_process: GO:0007034 - vacuolar transport [Evidence IGI] [PMID 20526336]; Emp70p 543564 EMP70 30034035 EMP70 Sugiyamaella lignohabitans Emp70p XP_018737034.1 541873 D 796027 CDS AWJ20_2156 30034036 544524..546212 B 1 NC_031674.1 Protein with a role in cellular adhesion and filamentous growth; also endosome-to-vacuole sorting; similar to Tmn3p; member of Transmembrane Nine family of proteins with 9 transmembrane segments; EMP70 has a paralog, TMN2, that arose from the whole genome duplication; GO_component: GO:0005768 - endosome [Evidence IEA]; GO_component: GO:0005768 - endosome [Evidence IDA] [PMID 8314797]; GO_component: GO:0010008 - endosome membrane [Evidence IEA]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 20681974]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006878 - cellular copper ion homeostasis [Evidence IGI,IMP] [PMID 20681974]; GO_process: GO:0016197 - endosomal transport [Evidence IMP] [PMID 20526336]; GO_process: GO:0001403 - invasive growth in response to glucose limitation [Evidence IMP] [PMID 18178563]; GO_process: GO:0007124 - pseudohyphal growth [Evidence IGI] [PMID 18178563]; GO_process: GO:0007034 - vacuolar transport [Evidence IGI] [PMID 20526336]; Emp70p 546212 EMP70 30034036 EMP70 Sugiyamaella lignohabitans Emp70p XP_018737035.1 544524 D 796027 CDS AWJ20_2157 30034037 complement(546281..548509) B 1 NC_031674.1 Minus-end-directed microtubule motor; functions in mitosis and meiosis, localizes to the spindle pole body and localization is dependent on functional Cik1p, required for nuclear fusion during mating; potential Cdc28p substrate; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005881 - cytoplasmic microtubule [Evidence IDA] [PMID 2138512]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0005871 - kinesin complex [Evidence IEA]; GO_component: GO:0005874 - microtubule [Evidence IEA]; GO_component: GO:0005874 - microtubule [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0000922 - spindle pole [Evidence IDA] [PMID 14562095]; GO_component: GO:0005816 - spindle pole body [Evidence IEA]; GO_component: GO:0005816 - spindle pole body [Evidence IDA] [PMID 11729143]; GO_component: GO:0005816 - spindle pole body [Evidence IDA] [PMID 2138512]; GO_component: GO:0005816 - spindle pole body [Evidence IDA] [PMID 8106549]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0008017 - microtubule binding [Evidence IEA]; GO_function: GO:0008017 - microtubule binding [Evidence IDA] [PMID 22734002]; GO_function: GO:0003777 - microtubule motor activity [Evidence IEA]; GO_function: GO:0008569 - minus-end-directed microtubule motor activity [Evidence IDA] [PMID 8041770]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0046982 - protein heterodimerization activity [Evidence IPI] [PMID 16107877]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0000741 - karyogamy [Evidence IEA]; GO_process: GO:0000742 - karyogamy involved in conjugation with cellular fusion [Evidence IMP] [PMID 2138512]; GO_process: GO:0007126 - meiotic nuclear division [Evidence IDA,IMP] [PMID 11729143]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0007018 - microtubule-based movement [Evidence IEA]; GO_process: GO:0007067 - mitotic nuclear division [Evidence IGI] [PMID 9201713]; GO_process: GO:0007064 - mitotic sister chromatid cohesion [Evidence IGI,IMP] [PMID 14742714]; GO_process: GO:0000743 - nuclear migration involved in conjugation with cellular fusion [Evidence IMP] [PMID 16380440]; GO_process: GO:0000743 - nuclear migration involved in conjugation with cellular fusion [Evidence IMP] [PMID 19386762]; GO_process: GO:0000743 - nuclear migration involved in conjugation with cellular fusion [Evidence IMP] [PMID 2138512]; Kar3p 548509 KAR3 30034037 KAR3 Sugiyamaella lignohabitans Kar3p XP_018737036.1 546281 R 796027 CDS AWJ20_2158 30034038 548971..549747 B 1 NC_031674.1 Nucleolar protein; constituent of pre-60S ribosomal particles; required for proper processing of the 27S pre-rRNA at the A3 and B1 sites to yield mature 5.8S and 25S rRNAs; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 15769876]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0000466 - maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 15769876]; GO_process: GO:0000463 - maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 15769876]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; Rrp15p 549747 RRP15 30034038 RRP15 Sugiyamaella lignohabitans Rrp15p XP_018737037.1 548971 D 796027 CDS AWJ20_2159 30034039 complement(550014..550577) B 1 NC_031674.1 Ferredoxin of the mitochondrial matrix; required for formation of cellular iron-sulfur proteins; involved in heme A biosynthesis; homologous to human adrenodoxin; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA]; GO_component: GO:0005759 - mitochondrial matrix [Evidence IDA] [PMID 10375636]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_function: GO:0051537 - 2 iron, 2 sulfur cluster binding [Evidence IEA]; GO_function: GO:0009055 - electron carrier activity [Evidence IEA]; GO_function: GO:0051536 - iron-sulfur cluster binding [Evidence IEA,IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016653 - oxidoreductase activity, acting on NAD(P)H, heme protein as acceptor [Evidence IGI,IMP] [PMID 11788607]; GO_process: GO:0006784 - heme a biosynthetic process [Evidence IGI,IMP] [PMID 11788607]; GO_process: GO:0016226 - iron-sulfur cluster assembly [Evidence IMP] [PMID 12970193]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; GO_process: GO:0006744 - ubiquinone biosynthetic process [Evidence IMP] [PMID 20534343]; GO_process: GO:0006744 - ubiquinone biosynthetic process [Evidence IMP] [PMID 21944752]; Yah1p 550577 YAH1 30034039 YAH1 Sugiyamaella lignohabitans Yah1p XP_018737038.1 550014 R 796027 CDS AWJ20_2160 30034041 complement(553737..556373) B 1 NC_031674.1 Plasma membrane ATP-binding cassette (ABC) transporter; required for the export of a-factor, catalyzes ATP hydrolysis coupled to a-factor transport; contains 12 transmembrane domains and two ATP binding domains; expressed only in MATa cells; GO_component: GO:0005794 - Golgi apparatus [Evidence IDA] [PMID 8045256]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 12374868]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 7679674]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 7679674]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016887 - ATPase activity [Evidence IEA]; GO_function: GO:0042626 - ATPase activity, coupled to transmembrane movement of substances [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_function: GO:0015440 - peptide-transporting ATPase activity [Evidence IDA,IMP] [PMID 11389139]; GO_function: GO:0015440 - peptide-transporting ATPase activity [Evidence IDA,IMP] [PMID 8626301]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA,IEA]; GO_process: GO:0000770 - peptide pheromone export [Evidence IMP] [PMID 2569166]; GO_process: GO:0019236 - response to pheromone [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; ATP-binding cassette alpha-factor transporter STE6 556373 STE6 30034041 STE6 Sugiyamaella lignohabitans ATP-binding cassette alpha-factor transporter STE6 XP_018737039.1 553737 R 796027 CDS AWJ20_2161 30034042 558783..559064 B 1 NC_031674.1 Methylene-fatty-acyl-phospholipid synthase; catalyzes the last two steps in phosphatidylcholine biosynthesis; also known as phospholipid methyltransferase; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 2445736]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0008170 - N-methyltransferase activity [Evidence IEA]; GO_function: GO:0008168 - methyltransferase activity [Evidence IEA]; GO_function: GO:0080101 - phosphatidyl-N-dimethylethanolamine N-methyltransferase activity [Evidence IEA]; GO_function: GO:0080101 - phosphatidyl-N-dimethylethanolamine N-methyltransferase activity [Evidence IDA,IGI] [PMID 2445736]; GO_function: GO:0080101 - phosphatidyl-N-dimethylethanolamine N-methyltransferase activity [Evidence IMP] [PMID 2684666]; GO_function: GO:0000773 - phosphatidyl-N-methylethanolamine N-methyltransferase activity [Evidence IEA]; GO_function: GO:0000773 - phosphatidyl-N-methylethanolamine N-methyltransferase activity [Evidence IDA,IGI] [PMID 2445736]; GO_function: GO:0000773 - phosphatidyl-N-methylethanolamine N-methyltransferase activity [Evidence IMP] [PMID 2684666]; GO_function: GO:0004608 - phosphatidylethanolamine N-methyltransferase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0032259 - methylation [Evidence IEA]; GO_process: GO:0006656 - phosphatidylcholine biosynthetic process [Evidence IEA]; GO_process: GO:0006656 - phosphatidylcholine biosynthetic process [Evidence IMP] [PMID 23000174]; GO_process: GO:0006656 - phosphatidylcholine biosynthetic process [Evidence IDA,IGI] [PMID 2445736]; GO_process: GO:0006656 - phosphatidylcholine biosynthetic process [Evidence IMP] [PMID 6337128]; GO_process: GO:0008654 - phospholipid biosynthetic process [Evidence IEA]; GO_process: GO:0006644 - phospholipid metabolic process [Evidence IEA]; bifunctional phosphatidyl-N-methylethanolamine N-methyltransferase/phosphatidyl-N-dimethylethanolamine N-methyltransferase 559064 OPI3 30034042 OPI3 Sugiyamaella lignohabitans bifunctional phosphatidyl-N-methylethanolamine N-methyltransferase/phosphatidyl-N-dimethylethanolamine N-methyltransferase XP_018737040.1 558783 D 796027 CDS AWJ20_2162 30034043 complement(559225..561030) B 1 NC_031674.1 Ferric reductase and cupric reductase; reduces siderophore-bound iron and oxidized copper prior to uptake by transporters; expression induced by low copper and iron levels; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 17507646]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 8164662]; GO_function: GO:0052851 - ferric-chelate reductase (NADPH) activity [Evidence IEA]; GO_function: GO:0000293 - ferric-chelate reductase activity [Evidence IDA] [PMID 8164662]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_process: GO:0015677 - copper ion import [Evidence IDA] [PMID 7814363]; GO_process: GO:0006825 - copper ion transport [Evidence IEA]; GO_process: GO:0006811 - ion transport [Evidence IEA]; GO_process: GO:0055072 - iron ion homeostasis [Evidence IEA]; GO_process: GO:0006826 - iron ion transport [Evidence IDA] [PMID 8164662]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; Fre1p 561030 FRE1 30034043 FRE1 Sugiyamaella lignohabitans Fre1p XP_018737041.1 559225 R 796027 CDS AWJ20_2163 30034044 561745..563682 B 1 NC_031674.1 Component of the conserved oligomeric Golgi complex; a cytosolic tethering complex (Cog1p through Cog8p) that functions in protein trafficking to mediate fusion of transport vesicles to Golgi compartments; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA]; GO_component: GO:0017119 - Golgi transport complex [Evidence IEA]; GO_component: GO:0017119 - Golgi transport complex [Evidence IPI] [PMID 11703943]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0032258 - CVT pathway [Evidence IMP] [PMID 20065092]; GO_process: GO:0006891 - intra-Golgi vesicle-mediated transport [Evidence IEA]; GO_process: GO:0006891 - intra-Golgi vesicle-mediated transport [Evidence IGI,IPI] [PMID 11703943]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Cog6p 563682 COG6 30034044 COG6 Sugiyamaella lignohabitans Cog6p XP_018737042.1 561745 D 796027 CDS AWJ20_2164 30034045 564464..565045 B 1 NC_031674.1 acid phosphatase DET1 565045 DET1 30034045 DET1 Sugiyamaella lignohabitans acid phosphatase DET1 XP_018737043.1 564464 D 796027 CDS AWJ20_2165 30034046 complement(565208..566482) B 1 NC_031674.1 Protein required for synthesis of diphthamide; required along with Dph2p, Kti11p, Jjj3p, and Dph5p; diphthamide is a modified histidine residue of translation elongation factor 2 (Eft1p or Eft2p); may act in a complex with Dph2p and Kti11p; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0017183 - peptidyl-diphthamide biosynthetic process from peptidyl-histidine [Evidence IEA,IEA]; GO_process: GO:0017183 - peptidyl-diphthamide biosynthetic process from peptidyl-histidine [Evidence IMP] [PMID 15485916]; Dph1p 566482 DPH1 30034046 DPH1 Sugiyamaella lignohabitans Dph1p XP_018737044.1 565208 R 796027 CDS AWJ20_2166 30034047 566854..568209 B 1 NC_031674.1 Chaperone protein; required for the assembly of box H/ACA snoRNPs and thus for pre-rRNA processing; functions as an RNA mimic; forms a complex with Naf1p and interacts with H/ACA snoRNP components Nhp2p and Cbf5p; homology with known Hsp90p cochaperones; relocalizes to the cytosol in response to hypoxia; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 22932476]; GO_component: GO:0005654 - nucleoplasm [Evidence IDA] [PMID 12228251]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22932476]; GO_function: GO:0051082 - unfolded protein binding [Evidence IDA] [PMID 19426738]; GO_process: GO:0000493 - box H/ACA snoRNP assembly [Evidence IMP,IPI] [PMID 12228251]; Shq1p 568209 SHQ1 30034047 SHQ1 Sugiyamaella lignohabitans Shq1p XP_018737045.1 566854 D 796027 CDS AWJ20_2169 30034050 571177..572403 B 1 NC_031674.1 Endosomal protein that interacts with phospholipid flippase Drs2p; interaction with Cdc50p is essential for Drs2p catalytic activity; mutations affect cell polarity and polarized growth; similar to Lem3p; CDC50 has a paralog, YNR048W, that arose from the whole genome duplication; GO_component: GO:0005768 - endosome [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0031902 - late endosome membrane [Evidence IEA]; GO_component: GO:0031902 - late endosome membrane [Evidence IDA] [PMID 12589066]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005802 - trans-Golgi network [Evidence IDA] [PMID 15090616]; GO_function: GO:0004012 - phospholipid-translocating ATPase activity [Evidence IGI] [PMID 15090616]; GO_process: GO:0051666 - actin cortical patch localization [Evidence IGI] [PMID 16195350]; GO_process: GO:0006897 - endocytosis [Evidence IGI] [PMID 16195350]; GO_process: GO:0006886 - intracellular protein transport [Evidence IMP] [PMID 16956384]; GO_process: GO:0045332 - phospholipid translocation [Evidence IGI] [PMID 15090616]; aminophospholipid translocase regulatory protein CDC50 572403 CDC50 30034050 CDC50 Sugiyamaella lignohabitans aminophospholipid translocase regulatory protein CDC50 XP_018737046.1 571177 D 796027 CDS AWJ20_2170 30034052 573306..574433 B 1 NC_031674.1 Delta(24)-sterol C-methyltransferase; converts zymosterol to fecosterol in the ergosterol biosynthetic pathway by methylating position C-24; localized to lipid particles, the plasma membrane-associated endoplasmic reticulum, and the mitochondrial outer membrane; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 11298754]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 9450962]; GO_component: GO:0005811 - lipid particle [Evidence IDA] [PMID 10515935]; GO_component: GO:0005811 - lipid particle [Evidence IDA] [PMID 24868093]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IDA] [PMID 16407407]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0008168 - methyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0003838 - sterol 24-C-methyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0003838 - sterol 24-C-methyltransferase activity [Evidence IDA] [PMID 18563465]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006696 - ergosterol biosynthetic process [Evidence IMP] [PMID 2677674]; GO_process: GO:0006696 - ergosterol biosynthetic process [Evidence IMP] [PMID 6363386]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0032259 - methylation [Evidence IEA]; GO_process: GO:0006694 - steroid biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0008202 - steroid metabolic process [Evidence IEA]; GO_process: GO:0016126 - sterol biosynthetic process [Evidence IEA,IEA]; sterol 24-C-methyltransferase 574433 ERG6 30034052 ERG6 Sugiyamaella lignohabitans sterol 24-C-methyltransferase XP_018737047.1 573306 D 796027 CDS AWJ20_2171 30034053 575960..577597 B 1 NC_031674.1 hexose transporter HXT6 577597 HXT6 30034053 HXT6 Sugiyamaella lignohabitans hexose transporter HXT6 XP_018737048.1 575960 D 796027 CDS AWJ20_2172 30034054 578598..579479 B 1 NC_031674.1 Mitochondrial amino acid transporter; acts both as a glutamate uniporter and as an aspartate-glutamate exchanger; involved in nitrogen metabolism and nitrogen compound biosynthesis; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence ISS] [PMID 10930523]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0015183 - L-aspartate transmembrane transporter activity [Evidence IDA] [PMID 14622413]; GO_function: GO:0005313 - L-glutamate transmembrane transporter activity [Evidence IDA] [PMID 14622413]; GO_function: GO:0015297 - antiporter activity [Evidence IDA] [PMID 14622413]; GO_function: GO:0015292 - uniporter activity [Evidence IDA] [PMID 14622413]; GO_process: GO:0015813 - L-glutamate transport [Evidence IDA] [PMID 14622413]; GO_process: GO:0006865 - amino acid transport [Evidence IEA]; GO_process: GO:0015810 - aspartate transport [Evidence IDA] [PMID 14622413]; GO_process: GO:0044271 - cellular nitrogen compound biosynthetic process [Evidence IMP] [PMID 14622413]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Agc1p 579479 AGC1 30034054 AGC1 Sugiyamaella lignohabitans Agc1p XP_018737049.1 578598 D 796027 CDS AWJ20_2173 30034055 complement(579704..581923) B 1 NC_031674.1 Medium chain fatty acyl-CoA synthetase; activates imported fatty acids; accepts a wide range of fatty acid chain lengths with a preference for medium chains, C9:0-C13:0; localized to the peroxisome; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005777 - peroxisome [Evidence IDA] [PMID 8670886]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0004467 - long-chain fatty acid-CoA ligase activity [Evidence IEA]; GO_function: GO:0004467 - long-chain fatty acid-CoA ligase activity [Evidence IDA] [PMID 8206942]; GO_function: GO:0031956 - medium-chain fatty acid-CoA ligase activity [Evidence IDA] [PMID 8206942]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0031957 - very long-chain fatty acid-CoA ligase activity [Evidence IGI] [PMID 9988704]; GO_process: GO:0006631 - fatty acid metabolic process [Evidence IEA]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0001676 - long-chain fatty acid metabolic process [Evidence IGI,IMP] [PMID 7962057]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; medium-chain fatty acid-CoA ligase FAA2 581923 FAA2 30034055 FAA2 Sugiyamaella lignohabitans medium-chain fatty acid-CoA ligase FAA2 XP_018737050.1 579704 R 796027 CDS AWJ20_2174 30034056 complement(582911..583297) B 1 NC_031674.1 High-mobility group (HMG) protein; binds to and remodels nucleosomes; involved in recruiting FACT and other chromatin remodelling complexes to the chromosomes; functionally redundant with Nhp6Ap; required for transcriptional initiation fidelity of some tRNA genes; homologous to mammalian HMGB1 and HMGB2; NHP6B has a paralog, NHP6A, that arose from the whole genome duplication; GO_component: GO:0005694 - chromosome [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 3169249]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0008301 - DNA binding, bending [Evidence IDA] [PMID 7721780]; GO_function: GO:0031491 - nucleosome binding [Evidence ISS] [PMID 11432837]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19158363]; GO_process: GO:0006281 - DNA repair [Evidence IEA]; GO_process: GO:0070898 - RNA polymerase III transcriptional preinitiation complex assembly [Evidence IGI] [PMID 11287614]; GO_process: GO:0070898 - RNA polymerase III transcriptional preinitiation complex assembly [Evidence IDA] [PMID 17178828]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0006338 - chromatin remodeling [Evidence IGI] [PMID 14739928]; GO_process: GO:0001195 - maintenance of transcriptional fidelity during DNA-templated transcription elongation from RNA polymerase III promoter [Evidence IDA] [PMID 16407207]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IGI] [PMID 8946917]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Nhp6bp 583297 NHP6B 30034056 NHP6B Sugiyamaella lignohabitans Nhp6bp XP_018737051.1 582911 R 796027 CDS AWJ20_2175 30034057 complement(583770..584735) B 1 NC_031674.1 Protein proposed to be involved in vacuolar functions; mutant shows defect in CPY processing and defects in vacuolar morphology; has similarity to oxidoreductases, found in lipid particles; required for replication of Brome mosaic virus in S. cerevisiae, a model system for studying replication of positive-strand RNA viruses in their natural hosts; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0005811 - lipid particle [Evidence IEA,IEA]; GO_component: GO:0005811 - lipid particle [Evidence IDA] [PMID 14562095]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence ISS] [PMID 8972580]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; GO_process: GO:0006624 - vacuolar protein processing [Evidence IMP] [PMID 21912603]; GO_process: GO:0007033 - vacuole organization [Evidence IMP] [PMID 21912603]; Env9p 584735 ENV9 30034057 ENV9 Sugiyamaella lignohabitans Env9p XP_018737052.1 583770 R 796027 CDS AWJ20_2176 30034058 complement(585581..587191) B 1 NC_031674.1 Dicarboxylic amino acid permease; mediates high-affinity and high-capacity transport of L-glutamate and L-aspartate; also a transporter for Gln, Asn, Ser, Ala, and Gly; relocalizes from plasma membrane to vacuole upon DNA replication stress; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 22842922]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence ISS] [PMID 10654085]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 22842922]; GO_function: GO:0015171 - amino acid transmembrane transporter activity [Evidence IEA]; GO_function: GO:0015171 - amino acid transmembrane transporter activity [Evidence IDA] [PMID 10654085]; GO_process: GO:0003333 - amino acid transmembrane transport [Evidence IEA]; GO_process: GO:0006865 - amino acid transport [Evidence IEA,IEA]; GO_process: GO:0006865 - amino acid transport [Evidence IDA] [PMID 10654085]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; Dip5p 587191 DIP5 30034058 DIP5 Sugiyamaella lignohabitans Dip5p XP_018737053.1 585581 R 796027 CDS AWJ20_2177 30034059 588233..588670 B 1 NC_031674.1 Ribosomal protein 28 (rp28) of the small (40S) ribosomal subunit; required for translational accuracy; homologous to mammalian ribosomal protein S23 and bacterial S12; RPS23B has a paralog, RPS23A, that arose from the whole genome duplication; deletion of both RPS23A and RPS23B is lethal; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0022627 - cytosolic small ribosomal subunit [Evidence IDA] [PMID 6814480]; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA,IEA]; GO_component: GO:0015935 - small ribosomal subunit [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IDA] [PMID 6814480]; GO_process: GO:0000462 - maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IGI] [PMID 16246728]; GO_process: GO:0006450 - regulation of translational fidelity [Evidence IGI,IMP] [PMID 8415737]; GO_process: GO:0006450 - regulation of translational fidelity [Evidence IGI,IMP] [PMID 8950190]; GO_process: GO:0006412 - translation [Evidence IEA]; ribosomal 40S subunit protein S23B 588670 RPS23B 30034059 RPS23B Sugiyamaella lignohabitans ribosomal 40S subunit protein S23B XP_018737054.1 588233 D 796027 CDS AWJ20_2178 30034060 complement(589164..590843) B 1 NC_031674.1 Protein involved in pre-rRNA processing; associated with U3 snRNP; component of small ribosomal subunit (SSU) processosome; ortholog of the human U3-55k protein; GO_component: GO:0030686 - 90S preribosome [Evidence IDA] [PMID 12150911]; GO_component: GO:0031428 - box C/D snoRNP complex [Evidence IDA] [PMID 11081632]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 12150911]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0032040 - small-subunit processome [Evidence IDA] [PMID 12068309]; GO_function: GO:0030515 - snoRNA binding [Evidence IPI] [PMID 11105764]; GO_process: GO:0000154 - rRNA modification [Evidence TAS] [PMID 10690410]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0006364 - rRNA processing [Evidence TAS] [PMID 10690410]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; Rrp9p 590843 RRP9 30034060 RRP9 Sugiyamaella lignohabitans Rrp9p XP_018737055.1 589164 R 796027 CDS AWJ20_2179 30034061 complement(593497..595758) B 1 NC_031674.1 uncharacterized protein 595758 30034061 AWJ20_2179 Sugiyamaella lignohabitans uncharacterized protein XP_018737056.1 593497 R 796027 CDS AWJ20_2180 30034063 598692..602078 B 1 NC_031674.1 protein kinase ALK2 602078 ALK2 30034063 ALK2 Sugiyamaella lignohabitans protein kinase ALK2 XP_018737057.1 598692 D 796027 CDS AWJ20_2181 30034064 605132..606229 B 1 NC_031674.1 Beta regulatory subunit of casein kinase 2 (CK2); a Ser/Thr protein kinase with roles in cell growth and proliferation; CK2, comprised of CKA1, CKA2, CKB1 and CKB2, has many substrates including transcription factors and all RNA polymerases; GO_component: GO:0034456 - UTP-C complex [Evidence IDA] [PMID 17515605]; GO_component: GO:0005956 - protein kinase CK2 complex [Evidence IEA]; GO_component: GO:0005956 - protein kinase CK2 complex [Evidence IDA] [PMID 8135547]; GO_function: GO:0019887 - protein kinase regulator activity [Evidence IEA]; GO_function: GO:0019887 - protein kinase regulator activity [Evidence IMP] [PMID 11827175]; GO_function: GO:0019887 - protein kinase regulator activity [Evidence IPI] [PMID 8135547]; GO_function: GO:0030291 - protein serine/threonine kinase inhibitor activity [Evidence IDA] [PMID 18265947]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IDA] [PMID 11551505]; GO_process: GO:0006468 - protein phosphorylation [Evidence IMP] [PMID 16607517]; GO_process: GO:0006468 - protein phosphorylation [Evidence IDA] [PMID 16952051]; GO_process: GO:0045859 - regulation of protein kinase activity [Evidence IEA]; GO_process: GO:0006356 - regulation of transcription from RNA polymerase I promoter [Evidence IDA] [PMID 11551505]; GO_process: GO:0006359 - regulation of transcription from RNA polymerase III promoter [Evidence IDA] [PMID 11551505]; casein kinase 2 regulatory subunit CKB1 606229 CKB1 30034064 CKB1 Sugiyamaella lignohabitans casein kinase 2 regulatory subunit CKB1 XP_018737058.1 605132 D 796027 CDS AWJ20_2182 30034065 complement(606784..607383) B 1 NC_031674.1 Specialized J-protein that functions in Fe-S cluster biogenesis; functions with Hsp70 in Fe-S cluster biogenesis in mitochondria; involved in iron metabolism; contains a J domain typical to J-type chaperones; localizes to the mitochondrial matrix; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 11278728]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0051087 - chaperone binding [Evidence IEA]; GO_function: GO:0051087 - chaperone binding [Evidence IMP] [PMID 11278728]; GO_function: GO:0051087 - chaperone binding [Evidence ISS] [PMID 9813017]; GO_process: GO:0009060 - aerobic respiration [Evidence IMP] [PMID 9813017]; GO_process: GO:0016226 - iron-sulfur cluster assembly [Evidence IMP] [PMID 11278728]; GO_process: GO:0006457 - protein folding [Evidence IEA]; GO_process: GO:0051259 - protein oligomerization [Evidence IEA]; GO_process: GO:0006950 - response to stress [Evidence IEA]; Jac1p 607383 JAC1 30034065 JAC1 Sugiyamaella lignohabitans Jac1p XP_018737059.1 606784 R 796027 CDS AWJ20_2183 30034066 complement(609663..611222) B 1 NC_031674.1 hexose transporter HXT13 611222 HXT13 30034066 HXT13 Sugiyamaella lignohabitans hexose transporter HXT13 XP_018737060.1 609663 R 796027 CDS AWJ20_2184 30034067 615264..616211 B 1 NC_031674.1 uncharacterized protein 616211 30034067 AWJ20_2184 Sugiyamaella lignohabitans uncharacterized protein XP_018737061.1 615264 D 796027 CDS AWJ20_2185 30034068 complement(616842..617744) B 1 NC_031674.1 hypothetical protein; null mutant is defective in unfolded protein response; possibly involved in a membrane regulation metabolic pathway; member of the PhzF superfamily, though most likely not involved in phenazine production; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016853 - isomerase activity [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0009058 - biosynthetic process [Evidence IEA]; GO_process: GO:0030968 - endoplasmic reticulum unfolded protein response [Evidence IMP] [PMID 16582425]; Yhi9p 617744 YHI9 30034068 YHI9 Sugiyamaella lignohabitans Yhi9p XP_018737062.1 616842 R 796027 CDS AWJ20_2186 30034069 618341..619315 B 1 NC_031674.1 imidazole-4-carboxamide isomerase HIS6 619315 HIS6 30034069 HIS6 Sugiyamaella lignohabitans imidazole-4-carboxamide isomerase HIS6 XP_018737063.1 618341 D 796027 CDS AWJ20_2187 30034070 complement(619501..620109) B 1 NC_031674.1 RNA polymerase II third largest subunit B44; part of central core; similar to prokaryotic alpha subunit; GO_component: GO:0005665 - DNA-directed RNA polymerase II, core complex [Evidence IDA] [PMID 1331084]; GO_component: GO:0005665 - DNA-directed RNA polymerase II, core complex [Evidence IDA] [PMID 2183013]; GO_component: GO:0005665 - DNA-directed RNA polymerase II, core complex [Evidence IDA] [PMID 2186966]; GO_component: GO:0005654 - nucleoplasm [Evidence IDA] [PMID 15520468]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0003899 - DNA-directed RNA polymerase activity [Evidence IEA,IEA]; GO_function: GO:0001055 - RNA polymerase II activity [Evidence IDA] [PMID 8288647]; GO_function: GO:0003968 - RNA-directed RNA polymerase activity [Evidence IDA] [PMID 18004386]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0046983 - protein dimerization activity [Evidence IEA]; GO_process: GO:0006369 - termination of RNA polymerase II transcription [Evidence IMP] [PMID 16537912]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IMP] [PMID 2685562]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; DNA-directed RNA polymerase II core subunit RPB3 620109 RPB3 30034070 RPB3 Sugiyamaella lignohabitans DNA-directed RNA polymerase II core subunit RPB3 XP_018737064.1 619501 R 796027 CDS AWJ20_2188 30034071 complement(join(621866..622651,623514..623555)) B 1 NC_031674.1 uncharacterized protein 623555 30034071 AWJ20_2188 Sugiyamaella lignohabitans uncharacterized protein XP_018737065.1 621866 R 796027 CDS AWJ20_2190 30034074 625411..625941 B 1 NC_031674.1 Catalytic subunit of the NatB N-terminal acetyltransferase; NatB catalyzes acetylation of the amino-terminal methionine residues of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met; GO_component: GO:0031416 - NatB complex [Evidence IDA] [PMID 12783868]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0008080 - N-acetyltransferase activity [Evidence IEA]; GO_function: GO:0004596 - peptide alpha-N-acetyltransferase activity [Evidence IEA]; GO_function: GO:0004596 - peptide alpha-N-acetyltransferase activity [Evidence IMP,ISS] [PMID 10545125]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016746 - transferase activity, transferring acyl groups [Evidence IEA]; GO_process: GO:0017196 - N-terminal peptidyl-methionine acetylation [Evidence IMP] [PMID 10545125]; GO_process: GO:0007010 - cytoskeleton organization [Evidence IGI,IMP] [PMID 12808144]; GO_process: GO:0000001 - mitochondrion inheritance [Evidence IGI,IMP] [PMID 12808144]; Nat3p 625941 NAT3 30034074 NAT3 Sugiyamaella lignohabitans Nat3p XP_018737066.1 625411 D 796027 CDS AWJ20_2191 30034075 626823..627266 B 1 NC_031674.1 60S ribosomal protein L12 627266 30034075 AWJ20_2191 Sugiyamaella lignohabitans 60S ribosomal protein L12 XP_018737067.1 626823 D 796027 CDS AWJ20_2192 30034076 complement(628197..631256) B 1 NC_031674.1 Ubiquitin activating enzyme (E1); involved in ubiquitin-mediated protein degradation and essential for viability; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 7629121]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 7629121]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0008641 - small protein activating enzyme activity [Evidence IEA]; GO_function: GO:0004839 - ubiquitin activating enzyme activity [Evidence IDA] [PMID 1989885]; GO_process: GO:0006464 - cellular protein modification process [Evidence IEA]; GO_process: GO:0016567 - protein ubiquitination [Evidence IEA]; GO_process: GO:0016567 - protein ubiquitination [Evidence IDA] [PMID 1989885]; E1 ubiquitin-activating protein UBA1 631256 UBA1 30034076 UBA1 Sugiyamaella lignohabitans E1 ubiquitin-activating protein UBA1 XP_018737068.1 628197 R 796027 CDS AWJ20_2194 30034078 complement(join(635302..635914,636185..636210)) B 1 NC_031674.1 uncharacterized protein 636210 30034078 AWJ20_2194 Sugiyamaella lignohabitans uncharacterized protein XP_018737069.1 635302 R 796027 CDS AWJ20_2196 30034080 638621..639715 B 1 NC_031674.1 reverse transcriptase 639715 30034080 AWJ20_2196 Sugiyamaella lignohabitans reverse transcriptase XP_018737070.1 638621 D 796027 CDS AWJ20_2197 30034081 complement(641223..644366) B 1 NC_031674.1 allele of CaO19.8194; polyprotein of L1-like non-LTR retrotransposon Zorro 3 644366 POL92 30034081 POL92 Sugiyamaella lignohabitans polyprotein of L1-like non-LTR retrotransposon Zorro 3 XP_018737071.1 641223 R 796027 CDS AWJ20_2199 30034083 648850..649974 B 1 NC_031674.1 Mitochondrial branched-chain amino acid (BCAA) aminotransferase; preferentially involved in BCAA biosynthesis; homolog of murine ECA39; highly expressed during logarithmic phase and repressed during stationary phase; BAT1 has a paralog, BAT2, that arose from the whole genome duplication; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA]; GO_component: GO:0005759 - mitochondrial matrix [Evidence IDA] [PMID 8798704]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0052656 - L-isoleucine transaminase activity [Evidence IEA]; GO_function: GO:0052654 - L-leucine transaminase activity [Evidence IEA]; GO_function: GO:0052655 - L-valine transaminase activity [Evidence IEA]; GO_function: GO:0004084 - branched-chain-amino-acid transaminase activity [Evidence IEA,IEA]; GO_function: GO:0004084 - branched-chain-amino-acid transaminase activity [Evidence IDA] [PMID 8798704]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0008483 - transaminase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0019509 - L-methionine salvage from methylthioadenosine [Evidence IEA]; GO_process: GO:0009082 - branched-chain amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0009082 - branched-chain amino acid biosynthetic process [Evidence IDA,IMP] [PMID 8798704]; GO_process: GO:0009083 - branched-chain amino acid catabolic process [Evidence IMP] [PMID 8702755]; GO_process: GO:0009081 - branched-chain amino acid metabolic process [Evidence IEA]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0009097 - isoleucine biosynthetic process [Evidence IEA]; GO_process: GO:0009098 - leucine biosynthetic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0009099 - valine biosynthetic process [Evidence IEA]; branched-chain-amino-acid transaminase BAT1 649974 BAT1 30034083 BAT1 Sugiyamaella lignohabitans branched-chain-amino-acid transaminase BAT1 XP_018737072.1 648850 D 796027 CDS AWJ20_2200 30034086 complement(650082..651068) B 1 NC_031674.1 NADPH-dependent quinone reductase; GFP-tagged protein localizes to the cytoplasm and nucleus; has similarity to E. coli quinone oxidoreductase and to human zeta-crystallin; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0032440 - 2-alkenal reductase [NAD(P)] activity [Evidence IDA] [PMID 21276778]; GO_function: GO:0017091 - AU-rich element binding [Evidence IDA] [PMID 17497241]; GO_function: GO:0017091 - AU-rich element binding [Evidence IDA] [PMID 19007762]; GO_function: GO:0003960 - NADPH:quinone reductase activity [Evidence IEA]; GO_function: GO:0003960 - NADPH:quinone reductase activity [Evidence IDA] [PMID 17497241]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0034599 - cellular response to oxidative stress [Evidence IMP] [PMID 17497241]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; Zta1p 651068 ZTA1 30034086 ZTA1 Sugiyamaella lignohabitans Zta1p XP_018737073.1 650082 R 796027 CDS AWJ20_2202 30034088 complement(653395..655200) B 1 NC_031674.1 uncharacterized protein 655200 30034088 AWJ20_2202 Sugiyamaella lignohabitans uncharacterized protein XP_018737074.1 653395 R 796027 CDS AWJ20_2203 30034089 complement(657616..658770) B 1 NC_031674.1 uncharacterized protein 658770 30034089 AWJ20_2203 Sugiyamaella lignohabitans uncharacterized protein XP_018737075.1 657616 R 796027 CDS AWJ20_2204 30034090 complement(659778..660935) B 1 NC_031674.1 Fe(II)-dependent sulfonate/alpha-ketoglutarate dioxygenase; involved in sulfonate catabolism for use as a sulfur source; contains sequence that resembles a J domain (typified by the E. coli DnaJ protein); induced by sulphur starvation; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0051213 - dioxygenase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0000907 - sulfonate dioxygenase activity [Evidence IDA] [PMID 10482536]; GO_process: GO:0046306 - alkanesulfonate catabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0044273 - sulfur compound catabolic process [Evidence IMP] [PMID 10482536]; Jlp1p 660935 JLP1 30034090 JLP1 Sugiyamaella lignohabitans Jlp1p XP_018737076.1 659778 R 796027 CDS AWJ20_2205 30034091 662044..663009 B 1 NC_031674.1 similar to several putative epoxide hydrolases; has match to alpha/beta hydrolase fold; allele of CaO19.6709; putative epoxide hydrolase 663009 30034091 AWJ20_2205 Sugiyamaella lignohabitans putative epoxide hydrolase XP_018737077.1 662044 D 796027 CDS AWJ20_2206 30034092 664660..664944 B 1 NC_031674.1 GABA (gamma-aminobutyrate) permease; serves as a GABA transport protein involved in the utilization of GABA as a nitrogen source; catalyzes the transport of putrescine and delta-aminolevulinic acid (ALA); localized to the vacuolar membrane; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 14985124]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0015171 - amino acid transmembrane transporter activity [Evidence IEA]; GO_function: GO:0015495 - gamma-aminobutyric acid:proton symporter activity [Evidence IGI] [PMID 8455553]; GO_function: GO:0015489 - putrescine transmembrane transporter activity [Evidence IGI] [PMID 14985124]; GO_process: GO:0003333 - amino acid transmembrane transport [Evidence IEA]; GO_process: GO:0006865 - amino acid transport [Evidence IEA]; GO_process: GO:0015812 - gamma-aminobutyric acid transport [Evidence IGI] [PMID 14985124]; GO_process: GO:0015812 - gamma-aminobutyric acid transport [Evidence IEP,IGI] [PMID 8455553]; GO_process: GO:0015847 - putrescine transport [Evidence IGI] [PMID 14985124]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IGI] [PMID 8455553]; GO_process: GO:0006810 - transport [Evidence IEA]; Uga4p 664944 UGA4 30034092 UGA4 Sugiyamaella lignohabitans Uga4p XP_018737078.1 664660 D 796027 CDS AWJ20_2207 30034093 665026..666414 B 1 NC_031674.1 GABA (gamma-aminobutyrate) permease; serves as a GABA transport protein involved in the utilization of GABA as a nitrogen source; catalyzes the transport of putrescine and delta-aminolevulinic acid (ALA); localized to the vacuolar membrane; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 14985124]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0015171 - amino acid transmembrane transporter activity [Evidence IEA]; GO_function: GO:0015495 - gamma-aminobutyric acid:proton symporter activity [Evidence IGI] [PMID 8455553]; GO_function: GO:0015489 - putrescine transmembrane transporter activity [Evidence IGI] [PMID 14985124]; GO_process: GO:0003333 - amino acid transmembrane transport [Evidence IEA]; GO_process: GO:0006865 - amino acid transport [Evidence IEA]; GO_process: GO:0015812 - gamma-aminobutyric acid transport [Evidence IGI] [PMID 14985124]; GO_process: GO:0015812 - gamma-aminobutyric acid transport [Evidence IEP,IGI] [PMID 8455553]; GO_process: GO:0015847 - putrescine transport [Evidence IGI] [PMID 14985124]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IGI] [PMID 8455553]; GO_process: GO:0006810 - transport [Evidence IEA]; Uga4p 666414 UGA4 30034093 UGA4 Sugiyamaella lignohabitans Uga4p XP_018737079.1 665026 D 796027 CDS AWJ20_2208 30034094 666928..668013 B 1 NC_031674.1 RNA export factor associated with the nuclear pore complex (NPC); associates with NUP116p; required for polyadenylated RNA export but not for protein import; homologous to S. pombe Rae1p and human RAE1; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 15210706]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0031965 - nuclear membrane [Evidence IEA]; GO_component: GO:0005643 - nuclear pore [Evidence IEA,IEA]; GO_component: GO:0005643 - nuclear pore [Evidence IDA] [PMID 10684247]; GO_component: GO:0005643 - nuclear pore [Evidence IDA] [PMID 8970155]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0051028 - mRNA transport [Evidence IEA]; GO_process: GO:0031081 - nuclear pore distribution [Evidence IMP] [PMID 9725905]; GO_process: GO:0016973 - poly(A)+ mRNA export from nucleus [Evidence IMP] [PMID 8970155]; GO_process: GO:0000973 - posttranscriptional tethering of RNA polymerase II gene DNA at nuclear periphery [Evidence IMP] [PMID 20932479]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:2000728 - regulation of mRNA export from nucleus in response to heat stress [Evidence IMP] [PMID 15210706]; GO_process: GO:0000972 - transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery [Evidence IMP] [PMID 20098417]; GO_process: GO:0000972 - transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery [Evidence IMP] [PMID 20932479]; GO_process: GO:0006810 - transport [Evidence IEA]; RNA export factor GLE2 668013 GLE2 30034094 GLE2 Sugiyamaella lignohabitans RNA export factor GLE2 XP_018737080.1 666928 D 796027 CDS AWJ20_2209 30034095 complement(668113..675045) B 1 NC_031674.1 Protein required for fermentation at low temperature; plays a role in the maturation of secretory proteins; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006113 - fermentation [Evidence IMP] [PMID 10781556]; GO_process: GO:0051604 - protein maturation [Evidence IMP] [PMID 19433630]; Csf1p 675045 CSF1 30034095 CSF1 Sugiyamaella lignohabitans Csf1p XP_018737081.1 668113 R 796027 CDS AWJ20_2210 30034097 complement(675671..678307) B 1 NC_031674.1 Protein required for fermentation at low temperature; plays a role in the maturation of secretory proteins; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006113 - fermentation [Evidence IMP] [PMID 10781556]; GO_process: GO:0051604 - protein maturation [Evidence IMP] [PMID 19433630]; Csf1p 678307 CSF1 30034097 CSF1 Sugiyamaella lignohabitans Csf1p XP_018737082.1 675671 R 796027 CDS AWJ20_2211 30034098 complement(679109..682111) B 1 NC_031674.1 GTPase activating protein (GAP) for Rho1p; regulator of a Tor2p-mediated, Rho1p GTPase switch that controls organization of the actin cytoskeleton; negative regulator of the RHO1-PKC1-MAPK cell integrity (CWI) and membrane fluidity homeostasis signaling pathways; potential Cdc28p substrate; SAC7 has a paralog, BAG7, that arose from the whole genome duplication; GO_component: GO:0005938 - cell cortex [Evidence IDA] [PMID 23878277]; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA,IEA]; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_function: GO:0005096 - GTPase activator activity [Evidence IEA]; GO_function: GO:0005100 - Rho GTPase activator activity [Evidence IDA] [PMID 9038344]; GO_process: GO:0035024 - negative regulation of Rho protein signal transduction [Evidence IGI] [PMID 9038344]; GO_process: GO:0090038 - negative regulation of protein kinase C signaling [Evidence IMP] [PMID 10625705]; GO_process: GO:0090038 - negative regulation of protein kinase C signaling [Evidence IGI] [PMID 11713681]; GO_process: GO:0090038 - negative regulation of protein kinase C signaling [Evidence IMP] [PMID 12207708]; GO_process: GO:0032321 - positive regulation of Rho GTPase activity [Evidence IDA] [PMID 9038344]; GO_process: GO:0032956 - regulation of actin cytoskeleton organization [Evidence IGI] [PMID 2183030]; GO_process: GO:0032956 - regulation of actin cytoskeleton organization [Evidence IGI] [PMID 9038344]; GO_process: GO:0060237 - regulation of fungal-type cell wall organization [Evidence IGI,IMP] [PMID 10625705]; GO_process: GO:0060237 - regulation of fungal-type cell wall organization [Evidence IGI] [PMID 12949174]; GO_process: GO:0007165 - signal transduction [Evidence IEA]; Sac7p 682111 SAC7 30034098 SAC7 Sugiyamaella lignohabitans Sac7p XP_018737083.1 679109 R 796027 CDS AWJ20_2212 30034099 complement(685524..686900) B 1 NC_031674.1 Actin-associated protein with roles in endocytosis and exocytosis; interacts with Rvs161p to regulate actin cytoskeleton, endocytosis, and viability following starvation or osmotic stress; recruited to bud tips by Gyl1p and Gyp5p during polarized growth; homolog of mammalian amphiphysin; GO_component: GO:0030479 - actin cortical patch [Evidence IDA] [PMID 10393809]; GO_component: GO:0030479 - actin cortical patch [Evidence IDA] [PMID 16239147]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 24390141]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA,IEA]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 10393809]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 19053807]; GO_function: GO:0003779 - actin binding [Evidence IEA]; GO_function: GO:0008092 - cytoskeletal protein binding [Evidence IPI,ISS] [PMID 10388809]; GO_function: GO:0008289 - lipid binding [Evidence IDA] [PMID 20610658]; GO_process: GO:0051666 - actin cortical patch localization [Evidence IMP] [PMID 8590801]; GO_process: GO:0006897 - endocytosis [Evidence IMP] [PMID 8590801]; GO_process: GO:0060988 - lipid tube assembly [Evidence IDA] [PMID 20610658]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IGI,IPI] [PMID 15802519]; amphiphysin 686900 RVS167 30034099 RVS167 Sugiyamaella lignohabitans amphiphysin XP_018737084.1 685524 R 796027 CDS AWJ20_2213 30034100 complement(join(690120..690135,690224..694215)) B 1 NC_031674.1 Nucleolar protein; component of the small subunit (SSU) processome containing the U3 snoRNA that is involved in processing of pre-18S rRNA; mutant has increased aneuploidy tolerance; GO_component: GO:0030686 - 90S preribosome [Evidence IDA] [PMID 12150911]; GO_component: GO:0030686 - 90S preribosome [Evidence IDA] [PMID 17652137]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 12068309]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 12150911]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 17652137]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 22842922]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0030688 - preribosome, small subunit precursor [Evidence IDA] [PMID 17652137]; GO_component: GO:0033553 - rDNA heterochromatin [Evidence IDA] [PMID 15489292]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0032040 - small-subunit processome [Evidence IDA] [PMID 12068309]; GO_component: GO:0034455 - t-UTP complex [Evidence IDA] [PMID 17515605]; GO_function: GO:0030515 - snoRNA binding [Evidence IPI] [PMID 12068309]; GO_process: GO:0000480 - endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 17652137]; GO_process: GO:0000447 - endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 17652137]; GO_process: GO:0000472 - endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 17652137]; GO_process: GO:0000462 - maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 12068309]; GO_process: GO:0045943 - positive regulation of transcription from RNA polymerase I promoter [Evidence IMP] [PMID 15489292]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Utp10p 694215 UTP10 30034100 UTP10 Sugiyamaella lignohabitans Utp10p XP_018737085.1 690120 R 796027 CDS AWJ20_2214 30034101 696342..697679 B 1 NC_031674.1 uncharacterized protein 697679 30034101 AWJ20_2214 Sugiyamaella lignohabitans uncharacterized protein XP_018737086.1 696342 D 796027 CDS AWJ20_2215 30034102 698523..701360 B 1 NC_031674.1 autophagy protein ATG11 701360 ATG11 30034102 ATG11 Sugiyamaella lignohabitans autophagy protein ATG11 XP_018737087.1 698523 D 796027 CDS AWJ20_2216 30034103 703797..704744 B 1 NC_031674.1 One of seven members of the yeast oxysterol binding protein family; involved in negative regulation of Sec14p-dependent Golgi complex secretory functions, peripheral membrane protein that localizes to the Golgi complex; KES1 has a paralog, HES1, that arose from the whole genome duplication; GO_component: GO:0000139 - Golgi membrane [Evidence IDA] [PMID 11916983]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 8978672]; GO_component: GO:0019898 - extrinsic component of membrane [Evidence IDA] [PMID 11916983]; GO_function: GO:0008289 - lipid binding [Evidence IDA,IMP] [PMID 20008566]; GO_function: GO:0008142 - oxysterol binding [Evidence ISS] [PMID 11238399]; GO_function: GO:0008142 - oxysterol binding [Evidence IMP,IPI] [PMID 16136145]; GO_function: GO:0070300 - phosphatidic acid binding [Evidence IDA] [PMID 20729555]; GO_function: GO:0005546 - phosphatidylinositol-4,5-bisphosphate binding [Evidence IMP,IPI] [PMID 11916983]; GO_function: GO:0070273 - phosphatidylinositol-4-phosphate binding [Evidence IDA] [PMID 20729555]; GO_function: GO:0015248 - sterol transporter activity [Evidence IDA,IMP] [PMID 20008566]; GO_process: GO:0035621 - ER to Golgi ceramide transport [Evidence IMP] [PMID 24213531]; GO_process: GO:0006897 - endocytosis [Evidence IGI] [PMID 15173322]; GO_process: GO:0006887 - exocytosis [Evidence IGI] [PMID 17004323]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0030011 - maintenance of cell polarity [Evidence IGI] [PMID 17004323]; GO_process: GO:0010922 - positive regulation of phosphatase activity [Evidence IDA] [PMID 21295699]; GO_process: GO:0006892 - post-Golgi vesicle-mediated transport [Evidence IGI] [PMID 11916983]; GO_process: GO:0006892 - post-Golgi vesicle-mediated transport [Evidence IGI] [PMID 8978672]; GO_process: GO:0006694 - steroid biosynthetic process [Evidence IEA]; GO_process: GO:0008202 - steroid metabolic process [Evidence IEA]; GO_process: GO:0016126 - sterol biosynthetic process [Evidence IEA]; GO_process: GO:0015918 - sterol transport [Evidence IDA,IGI] [PMID 16585271]; GO_process: GO:0015918 - sterol transport [Evidence IDA,IMP] [PMID 20008566]; oxysterol-binding protein KES1 704744 KES1 30034103 KES1 Sugiyamaella lignohabitans oxysterol-binding protein KES1 XP_018737088.1 703797 D 796027 CDS AWJ20_2217 30034104 708842..709147 B 1 NC_031674.1 High-mobility group (HMG) protein; binds to and remodels nucleosomes; involved in recruiting FACT and other chromatin remodelling complexes to the chromosomes; functionally redundant with Nhp6Ap; required for transcriptional initiation fidelity of some tRNA genes; homologous to mammalian HMGB1 and HMGB2; NHP6B has a paralog, NHP6A, that arose from the whole genome duplication; GO_component: GO:0005694 - chromosome [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 3169249]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0008301 - DNA binding, bending [Evidence IDA] [PMID 7721780]; GO_function: GO:0031491 - nucleosome binding [Evidence ISS] [PMID 11432837]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19158363]; GO_process: GO:0006281 - DNA repair [Evidence IEA]; GO_process: GO:0070898 - RNA polymerase III transcriptional preinitiation complex assembly [Evidence IGI] [PMID 11287614]; GO_process: GO:0070898 - RNA polymerase III transcriptional preinitiation complex assembly [Evidence IDA] [PMID 17178828]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0006338 - chromatin remodeling [Evidence IGI] [PMID 14739928]; GO_process: GO:0001195 - maintenance of transcriptional fidelity during DNA-templated transcription elongation from RNA polymerase III promoter [Evidence IDA] [PMID 16407207]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IGI] [PMID 8946917]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Nhp6bp 709147 NHP6B 30034104 NHP6B Sugiyamaella lignohabitans Nhp6bp XP_018737089.1 708842 D 796027 CDS AWJ20_2218 30034105 complement(709876..712212) B 1 NC_031674.1 Deubiquitinating enzyme anchored to the outer mitochondrial membrane; probably not important for general mitochondrial functioning, but may perform a more specialized function at mitochondria; GO_component: GO:0005737 - cytoplasm [Evidence IC] [PMID 8982460]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IDA] [PMID 12914939]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IDA] [PMID 16407407]; GO_function: GO:0008234 - cysteine-type peptidase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_function: GO:0004843 - ubiquitin-specific protease activity [Evidence TAS] [PMID 8982460]; GO_process: GO:0016579 - protein deubiquitination [Evidence TAS] [PMID 8982460]; GO_process: GO:0006508 - proteolysis [Evidence IEA]; GO_process: GO:0006511 - ubiquitin-dependent protein catabolic process [Evidence IEA]; Ubp16p 712212 UBP16 30034105 UBP16 Sugiyamaella lignohabitans Ubp16p XP_018737090.1 709876 R 796027 CDS AWJ20_2219 30034106 713753..714229 B 1 NC_031674.1 potential heme/steroid binding protein; similar to A. thaliana F17I14_130; allele of CaO19.4522; putative heme/steroid binding protein 714229 30034106 AWJ20_2219 Sugiyamaella lignohabitans putative heme/steroid binding protein XP_018737091.1 713753 D 796027 CDS AWJ20_2220 30034108 717982..720456 B 1 NC_031674.1 RNAPII degradation factor (predicted) 720456 30034108 AWJ20_2220 Sugiyamaella lignohabitans RNAPII degradation factor (predicted) XP_018737092.1 717982 D 796027 CDS AWJ20_2221 30034109 complement(720792..722135) B 1 NC_031674.1 Small subunit of carbamoyl phosphate synthetase; carbamoyl phosphate synthetase catalyzes a step in the synthesis of citrulline, an arginine precursor; translationally regulated by an attenuator peptide encoded by YOR302W within the CPA1 mRNA 5'-leader; GO_component: GO:0005951 - carbamoyl-phosphate synthase complex [Evidence IDA] [PMID 206535]; GO_component: GO:0005951 - carbamoyl-phosphate synthase complex [Evidence ISS] [PMID 6086650]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0004088 - carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity [Evidence IEA]; GO_function: GO:0004088 - carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity [Evidence IMP] [PMID 6086650]; GO_function: GO:0004088 - carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity [Evidence IDA] [PMID 8626695]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006526 - arginine biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0006526 - arginine biosynthetic process [Evidence IMP] [PMID 9290206]; GO_process: GO:0070409 - carbamoyl phosphate biosynthetic process [Evidence IEA]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0006543 - glutamine catabolic process [Evidence IEA]; carbamoyl-phosphate synthase (glutamine-hydrolyzing) CPA1 722135 CPA1 30034109 CPA1 Sugiyamaella lignohabitans carbamoyl-phosphate synthase (glutamine-hydrolyzing) CPA1 XP_018737093.1 720792 R 796027 CDS AWJ20_2222 30034110 complement(724509..725435) B 1 NC_031674.1 Dihydrouridine synthase; member of a widespread family of conserved proteins including Smm1p, Dus1p, and Dus3p; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0017150 - tRNA dihydrouridine synthase activity [Evidence IEA]; GO_function: GO:0017150 - tRNA dihydrouridine synthase activity [Evidence ISS] [PMID 12003496]; GO_function: GO:0017150 - tRNA dihydrouridine synthase activity [Evidence IMP] [PMID 14970222]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0002943 - tRNA dihydrouridine synthesis [Evidence IEA]; GO_process: GO:0006400 - tRNA modification [Evidence ISS] [PMID 12003496]; GO_process: GO:0006400 - tRNA modification [Evidence IMP] [PMID 14970222]; GO_process: GO:0008033 - tRNA processing [Evidence IEA,IEA]; Dus4p 725435 DUS4 30034110 DUS4 Sugiyamaella lignohabitans Dus4p XP_018737094.1 724509 R 796027 CDS AWJ20_2223 30034111 726285..727235 B 1 NC_031674.1 uncharacterized protein 727235 30034111 AWJ20_2223 Sugiyamaella lignohabitans uncharacterized protein XP_018737095.1 726285 D 796027 CDS AWJ20_2224 30034112 727652..728827 B 1 NC_031674.1 autophagy protein ATG9 728827 ATG9 30034112 ATG9 Sugiyamaella lignohabitans autophagy protein ATG9 XP_018737096.1 727652 D 796027 CDS AWJ20_2225 30034113 complement(729549..732047) B 1 NC_031674.1 Nucleolar protein; forms a complex with Noc4p that mediates maturation and nuclear export of 40S ribosomal subunits; also present in the small subunit processome complex, which is required for processing of pre-18S rRNA; GO_component: GO:0030686 - 90S preribosome [Evidence IDA] [PMID 12150911]; GO_component: GO:0030692 - Noc4p-Nop14p complex [Evidence IPI] [PMID 12446671]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 10684247]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 12068309]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 12150911]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0032040 - small-subunit processome [Evidence IEA]; GO_component: GO:0032040 - small-subunit processome [Evidence IDA] [PMID 12068309]; GO_function: GO:0030515 - snoRNA binding [Evidence IPI] [PMID 12068309]; GO_process: GO:0000480 - endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 15489292]; GO_process: GO:0000447 - endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 15489292]; GO_process: GO:0000472 - endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 15489292]; GO_process: GO:0000462 - maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 12068309]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0006364 - rRNA processing [Evidence IMP] [PMID 11694595]; GO_process: GO:0042274 - ribosomal small subunit biogenesis [Evidence IMP] [PMID 11694595]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; Nop14p 732047 NOP14 30034113 NOP14 Sugiyamaella lignohabitans Nop14p XP_018737097.1 729549 R 796027 CDS AWJ20_2226 30034114 complement(734402..738736) B 1 NC_031674.1 DNA repair protein Mus7/Mms22 738736 mus7 30034114 mus7 Sugiyamaella lignohabitans DNA repair protein Mus7/Mms22 XP_018737098.1 734402 R 796027 CDS AWJ20_2227 30034115 741159..742592 B 1 NC_031674.1 Mitochondrial cardiolipin-specific phospholipase; functions upstream of Taz1p to generate monolyso-cardiolipin; transcription increases upon genotoxic stress; involved in restricting Ty1 transposition; has homology to mammalian CGI-58; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IDA] [PMID 23637464]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 19244244]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0004623 - phospholipase A2 activity [Evidence IDA,IMP] [PMID 19244244]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0035965 - cardiolipin acyl-chain remodeling [Evidence IMP] [PMID 19244244]; GO_process: GO:0035965 - cardiolipin acyl-chain remodeling [Evidence IMP] [PMID 23637464]; GO_process: GO:0032048 - cardiolipin metabolic process [Evidence IDA,IGI] [PMID 19244244]; Cld1p 742592 CLD1 30034115 CLD1 Sugiyamaella lignohabitans Cld1p XP_018737099.1 741159 D 796027 CDS AWJ20_2228 30034116 742913..743299 B 1 NC_031674.1 NADP(+)-dependent serine dehydrogenase and carbonyl reductase; acts on serine, L-allo-threonine, and other 3-hydroxy acids; green fluorescent protein fusion protein localizes to the cytoplasm and nucleus; may interact with ribosomes, based on co-purification experiments; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005840 - ribosome [Evidence IDA] [PMID 16702403]; GO_function: GO:0004090 - carbonyl reductase (NADPH) activity [Evidence IDA] [PMID 18630881]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IDA] [PMID 17962934]; GO_function: GO:0031132 - serine 3-dehydrogenase activity [Evidence IDA] [PMID 12535615]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IC] [PMID 12535615]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; oxidoreductase 743299 30034116 AWJ20_2228 Sugiyamaella lignohabitans oxidoreductase XP_018737100.1 742913 D 796027 CDS AWJ20_2229 30034117 743406..743729 B 1 NC_031674.1 NADP(+)-dependent serine dehydrogenase and carbonyl reductase; acts on serine, L-allo-threonine, and other 3-hydroxy acids; green fluorescent protein fusion protein localizes to the cytoplasm and nucleus; may interact with ribosomes, based on co-purification experiments; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005840 - ribosome [Evidence IDA] [PMID 16702403]; GO_function: GO:0004090 - carbonyl reductase (NADPH) activity [Evidence IDA] [PMID 18630881]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IDA] [PMID 17962934]; GO_function: GO:0031132 - serine 3-dehydrogenase activity [Evidence IDA] [PMID 12535615]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IC] [PMID 12535615]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; oxidoreductase 743729 30034117 AWJ20_2229 Sugiyamaella lignohabitans oxidoreductase XP_018737101.1 743406 D 796027 CDS AWJ20_2230 30034119 complement(744276..745268) B 1 NC_031674.1 uncharacterized protein 745268 30034119 AWJ20_2230 Sugiyamaella lignohabitans uncharacterized protein XP_018737102.1 744276 R 796027 CDS AWJ20_2231 30034120 745659..746543 B 1 NC_031674.1 hypothetical protein; GFP-fusion protein is induced in response to the DNA-damaging agent MMS; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0006950 - response to stress [Evidence IEA]; Fmp41p 746543 FMP41 30034120 FMP41 Sugiyamaella lignohabitans Fmp41p XP_018737103.1 745659 D 796027 CDS AWJ20_2232 30034121 complement(746887..747297) B 1 NC_031674.1 uncharacterized protein 747297 30034121 AWJ20_2232 Sugiyamaella lignohabitans uncharacterized protein XP_018737104.1 746887 R 796027 CDS AWJ20_2233 30034122 748030..750690 B 1 NC_031674.1 Zinc cluster protein proposed to be a transcriptional regulator; regulator involved in the stress response; null mutants have a respiratory deficiency, calcofluor white sensitivity and slightly increased cycloheximide resistance; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19111667]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19158363]; GO_function: GO:0000981 - sequence-specific DNA binding RNA polymerase II transcription factor activity [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence IEA]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA,IEA]; GO_process: GO:0006950 - response to stress [Evidence IEA]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA,IEA]; Asg1p 750690 ASG1 30034122 ASG1 Sugiyamaella lignohabitans Asg1p XP_018737105.1 748030 D 796027 CDS AWJ20_2234 30034123 complement(750899..752398) B 1 NC_031674.1 Putative transporter in the major facilitator superfamily; member of the 12-spanner drug:H(+) antiporter DHA1 family; mutations in membrane-spanning domains permit cation and histidinol uptake; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005886 - plasma membrane [Evidence ISS] [PMID 8955402]; GO_function: GO:0015665 - alcohol transmembrane transporter activity [Evidence IMP] [PMID 2405251]; GO_function: GO:0022890 - inorganic cation transmembrane transporter activity [Evidence IMP] [PMID 8955402]; GO_process: GO:0006812 - cation transport [Evidence IMP] [PMID 8955402]; GO_process: GO:0015850 - organic hydroxy compound transport [Evidence IMP] [PMID 2405251]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Hol1p 752398 HOL1 30034123 HOL1 Sugiyamaella lignohabitans Hol1p XP_018737106.1 750899 R 796027 CDS AWJ20_2235 30034124 753434..754681 B 1 NC_031674.1 uncharacterized protein 754681 30034124 AWJ20_2235 Sugiyamaella lignohabitans uncharacterized protein XP_018737107.1 753434 D 796027 CDS AWJ20_2236 30034125 complement(754829..756262) B 1 NC_031674.1 Cytochrome b2 (L-lactate cytochrome-c oxidoreductase); component of the mitochondrial intermembrane space, required for lactate utilization; expression is repressed by glucose and anaerobic conditions; GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IEA]; GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IDA] [PMID 3004948]; GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IDA] [PMID 6290489]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 11502169]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0070469 - respiratory chain [Evidence IEA]; GO_function: GO:0010181 - FMN binding [Evidence IEA]; GO_function: GO:0004460 - L-lactate dehydrogenase (cytochrome) activity [Evidence IEA]; GO_function: GO:0004460 - L-lactate dehydrogenase (cytochrome) activity [Evidence IDA] [PMID 3004948]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0020037 - heme binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_process: GO:0006089 - lactate metabolic process [Evidence IMP] [PMID 8492799]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; Cyb2p 756262 CYB2 30034125 CYB2 Sugiyamaella lignohabitans Cyb2p XP_018737108.1 754829 R 796027 CDS AWJ20_2237 30034126 761325..762437 B 1 NC_031674.1 protein MET30 762437 30034126 AWJ20_2237 Sugiyamaella lignohabitans protein MET30 XP_018737109.1 761325 D 796027 CDS AWJ20_2238 30034127 complement(762866..763429) B 1 NC_031674.1 Peroxisomal adenine nucleotide transporter; involved in beta-oxidation of medium-chain fatty acid; required for peroxisome proliferation; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0005779 - integral component of peroxisomal membrane [Evidence IDA] [PMID 11566870]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005778 - peroxisomal membrane [Evidence IEA]; GO_component: GO:0005777 - peroxisome [Evidence IEA]; GO_function: GO:0000295 - adenine nucleotide transmembrane transporter activity [Evidence IMP] [PMID 11390660]; GO_function: GO:0000295 - adenine nucleotide transmembrane transporter activity [Evidence IDA] [PMID 11566870]; GO_process: GO:0015867 - ATP transport [Evidence IDA] [PMID 11566870]; GO_process: GO:0006635 - fatty acid beta-oxidation [Evidence IGI,IMP] [PMID 11390660]; GO_process: GO:0006635 - fatty acid beta-oxidation [Evidence IGI,IMP] [PMID 11566870]; GO_process: GO:0006811 - ion transport [Evidence IEA]; GO_process: GO:0007031 - peroxisome organization [Evidence IMP] [PMID 11390660]; GO_process: GO:0015992 - proton transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Ant1p 763429 ANT1 30034127 ANT1 Sugiyamaella lignohabitans Ant1p XP_018737110.1 762866 R 796027 CDS AWJ20_2239 30034128 complement(763913..764125) B 1 NC_031674.1 uncharacterized protein 764125 30034128 AWJ20_2239 Sugiyamaella lignohabitans uncharacterized protein XP_018737111.1 763913 R 796027 CDS AWJ20_2240 30034130 765230..766144 B 1 NC_031674.1 Isocitrate lyase; catalyzes the formation of succinate and glyoxylate from isocitrate, a key reaction of the glyoxylate cycle; expression of ICL1 is induced by growth on ethanol and repressed by growth on glucose; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0004451 - isocitrate lyase activity [Evidence IEA,IEA]; GO_function: GO:0004451 - isocitrate lyase activity [Evidence IMP,ISS] [PMID 1551398]; GO_function: GO:0016829 - lyase activity [Evidence IEA]; GO_process: GO:0019752 - carboxylic acid metabolic process [Evidence IEA]; GO_process: GO:0006097 - glyoxylate cycle [Evidence IEA,IEA]; GO_process: GO:0006097 - glyoxylate cycle [Evidence TAS] [PMID 11092862]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0006099 - tricarboxylic acid cycle [Evidence IEA]; isocitrate lyase 1 766144 ICL1 30034130 ICL1 Sugiyamaella lignohabitans isocitrate lyase 1 XP_018737112.1 765230 D 796027 CDS AWJ20_2241 30034131 766804..768255 B 1 NC_031674.1 uncharacterized protein 768255 30034131 AWJ20_2241 Sugiyamaella lignohabitans uncharacterized protein XP_018737113.1 766804 D 796027 CDS AWJ20_2242 30034132 768910..770523 B 1 NC_031674.1 carboxylesterase-lipase family protein 770523 30034132 AWJ20_2242 Sugiyamaella lignohabitans carboxylesterase-lipase family protein XP_018737114.1 768910 D 796027 CDS AWJ20_2243 30034133 complement(770734..771948) B 1 NC_031674.1 B-type cyclin CLB3 771948 CLB3 30034133 CLB3 Sugiyamaella lignohabitans B-type cyclin CLB3 XP_018737115.1 770734 R 796027 CDS AWJ20_2244 30034134 782255..783319 B 1 NC_031674.1 High affinity nicotinic acid plasma membrane permease; responsible for uptake of low levels of nicotinic acid; expression of the gene increases in the absence of extracellular nicotinic acid or para-aminobenzoate (PABA); GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0005887 - integral component of plasma membrane [Evidence ISS] [PMID 9678606]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0015663 - nicotinamide mononucleotide transmembrane transporter activity [Evidence IMP] [PMID 10869563]; GO_process: GO:0015890 - nicotinamide mononucleotide transport [Evidence IEP,IMP] [PMID 10869563]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Tna1p 783319 TNA1 30034134 TNA1 Sugiyamaella lignohabitans Tna1p XP_018737116.1 782255 D 796027 CDS AWJ20_2245 30034135 complement(783493..783963) B 1 NC_031674.1 uncharacterized protein 783963 30034135 AWJ20_2245 Sugiyamaella lignohabitans uncharacterized protein XP_018737117.1 783493 R 796027 CDS AWJ20_2246 30034136 784705..785826 B 1 NC_031674.1 Lyso-phosphatidylcholine acyltransferase; required for normal phospholipid content of mitochondrial membranes; major determinant of the final acyl chain composition of the mitochondrial-specific phospholipid cardiolipin; mutations in human ortholog tafazzin cause Barth syndrome, a rare X-linked disease characterized by skeletal and cardiomyopathy and bouts of cyclic neutropenia; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0031307 - integral component of mitochondrial outer membrane [Evidence IDA] [PMID 16135531]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IDA] [PMID 16880272]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IEA,IEA]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IDA] [PMID 16880272]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 15304507]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 15588229]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0047184 - 1-acylglycerophosphocholine O-acyltransferase activity [Evidence IEA]; GO_function: GO:0047184 - 1-acylglycerophosphocholine O-acyltransferase activity [Evidence IMP] [PMID 15588229]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016746 - transferase activity, transferring acyl groups [Evidence IEA,IEA]; GO_process: GO:0035965 - cardiolipin acyl-chain remodeling [Evidence IMP] [PMID 14651618]; GO_process: GO:0032048 - cardiolipin metabolic process [Evidence IMP] [PMID 14651618]; GO_process: GO:0007007 - inner mitochondrial membrane organization [Evidence IMP] [PMID 14651618]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0042775 - mitochondrial ATP synthesis coupled electron transport [Evidence IMP] [PMID 15304507]; GO_process: GO:0008654 - phospholipid biosynthetic process [Evidence IMP] [PMID 14651618]; GO_process: GO:0008654 - phospholipid biosynthetic process [Evidence IMP] [PMID 15588229]; GO_process: GO:0006461 - protein complex assembly [Evidence IMP] [PMID 16135531]; Taz1p 785826 TAZ1 30034136 TAZ1 Sugiyamaella lignohabitans Taz1p XP_018737118.1 784705 D 796027 CDS AWJ20_2247 30034137 786879..787613 B 1 NC_031674.1 Adaptor protein required for structural integrity of the SAGA complex; a histone acetyltransferase-coactivator complex that is involved in global regulation of gene expression through acetylation and transcription functions; GO_component: GO:0005671 - Ada2/Gcn5/Ada3 transcription activator complex [Evidence IDA,IPI] [PMID 9154821]; GO_component: GO:0000124 - SAGA complex [Evidence IDA] [PMID 9674426]; GO_component: GO:0070461 - SAGA-type complex [Evidence IEA]; GO_component: GO:0046695 - SLIK (SAGA-like) complex [Evidence IDA] [PMID 12446794]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0003713 - transcription coactivator activity [Evidence IMP] [PMID 10048020]; GO_function: GO:0003712 - transcription cofactor activity [Evidence IMP,IPI] [PMID 9154821]; GO_process: GO:0016568 - chromatin modification [Evidence IDA] [PMID 9674426]; GO_process: GO:0016573 - histone acetylation [Evidence IDA] [PMID 9674426]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IMP] [PMID 9154821]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Hfi1p 787613 HFI1 30034137 HFI1 Sugiyamaella lignohabitans Hfi1p XP_018737119.1 786879 D 796027 CDS AWJ20_2248 30034138 787761..788573 B 1 NC_031674.1 Adaptor protein required for structural integrity of the SAGA complex; a histone acetyltransferase-coactivator complex that is involved in global regulation of gene expression through acetylation and transcription functions; GO_component: GO:0005671 - Ada2/Gcn5/Ada3 transcription activator complex [Evidence IDA,IPI] [PMID 9154821]; GO_component: GO:0000124 - SAGA complex [Evidence IDA] [PMID 9674426]; GO_component: GO:0070461 - SAGA-type complex [Evidence IEA]; GO_component: GO:0046695 - SLIK (SAGA-like) complex [Evidence IDA] [PMID 12446794]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0003713 - transcription coactivator activity [Evidence IMP] [PMID 10048020]; GO_function: GO:0003712 - transcription cofactor activity [Evidence IMP,IPI] [PMID 9154821]; GO_process: GO:0016568 - chromatin modification [Evidence IDA] [PMID 9674426]; GO_process: GO:0016573 - histone acetylation [Evidence IDA] [PMID 9674426]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IMP] [PMID 9154821]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Hfi1p 788573 HFI1 30034138 HFI1 Sugiyamaella lignohabitans Hfi1p XP_018737120.1 787761 D 796027 CDS AWJ20_2249 30034139 complement(788880..789293) B 1 NC_031674.1 uncharacterized protein 789293 30034139 AWJ20_2249 Sugiyamaella lignohabitans uncharacterized protein XP_018737121.1 788880 R 796027 CDS AWJ20_2250 30034141 789627..792329 B 1 NC_031674.1 Pentatricopeptide repeat-containing protein At1g63130, mitochondrial 792329 AEP3 30034141 AEP3 Sugiyamaella lignohabitans Pentatricopeptide repeat-containing protein At1g63130, mitochondrial XP_018737122.1 789627 D 796027 CDS AWJ20_2251 30034142 801844..804561 B 1 NC_031674.1 Heme-dependent repressor of hypoxic genes; mediates aerobic transcriptional repression of hypoxia induced genes such as COX5b and CYC7; repressor function regulated through decreased promoter occupancy in response to oxidative stress; contains an HMG domain that is responsible for DNA bending activity; involved in the hyperosmotic stress resistance; GO_component: GO:0000790 - nuclear chromatin [Evidence IC] [PMID 10446242]; GO_component: GO:0000790 - nuclear chromatin [Evidence IC] [PMID 10487921]; GO_component: GO:0000790 - nuclear chromatin [Evidence IC] [PMID 7565763]; GO_component: GO:0000790 - nuclear chromatin [Evidence IC] [PMID 8413209]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0008301 - DNA binding, bending [Evidence IDA] [PMID 10446242]; GO_function: GO:0008301 - DNA binding, bending [Evidence IDA] [PMID 7565763]; GO_function: GO:0001078 - RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription [Evidence IMP] [PMID 10446242]; GO_function: GO:0001135 - RNA polymerase II transcription factor recruiting transcription factor activity [Evidence IMP] [PMID 14665463]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 10446242]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 10487921]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19111667]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 8413209]; GO_process: GO:0000122 - negative regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 10446242]; GO_process: GO:0000122 - negative regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 10487921]; GO_process: GO:0000122 - negative regulation of transcription from RNA polymerase II promoter [Evidence IGI,IMP] [PMID 16835445]; GO_process: GO:0000122 - negative regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 2546055]; GO_process: GO:0000122 - negative regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 2847035]; GO_process: GO:0000122 - negative regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 3062365]; GO_process: GO:0097201 - negative regulation of transcription from RNA polymerase II promoter in response to stress [Evidence IMP] [PMID 21299653]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Rox1p 804561 ROX1 30034142 ROX1 Sugiyamaella lignohabitans Rox1p XP_018737123.1 801844 D 796027 CDS AWJ20_2252 30034143 complement(805065..805475) B 1 NC_031674.1 Protein involved in cis-Golgi membrane traffic; v-SNARE that interacts with two t-SNARES, Sed5p and Pep12p; required for multiple vacuolar sorting pathways; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA]; GO_component: GO:0031201 - SNARE complex [Evidence IPI] [PMID 10397773]; GO_component: GO:0030173 - integral component of Golgi membrane [Evidence IDA] [PMID 9398683]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0031902 - late endosome membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_function: GO:0005484 - SNAP receptor activity [Evidence IDA] [PMID 19805279]; GO_process: GO:0006896 - Golgi to vacuole transport [Evidence IMP] [PMID 9199167]; GO_process: GO:0006891 - intra-Golgi vesicle-mediated transport [Evidence IMP] [PMID 9398683]; GO_process: GO:0006886 - intracellular protein transport [Evidence IEA]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0042144 - vacuole fusion, non-autophagic [Evidence IMP] [PMID 10385523]; GO_process: GO:0006906 - vesicle fusion [Evidence IDA] [PMID 11739407]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IEA]; Vti1p 805475 VTI1 30034143 VTI1 Sugiyamaella lignohabitans Vti1p XP_018737124.1 805065 R 796027 CDS AWJ20_2253 30034144 complement(805559..805786) B 1 NC_031674.1 uncharacterized protein 805786 30034144 AWJ20_2253 Sugiyamaella lignohabitans uncharacterized protein XP_018737125.1 805559 R 796027 CDS AWJ20_2254 30034145 806909..808876 B 1 NC_031674.1 Peroxisomal biogenesis factor 8 808876 30034145 AWJ20_2254 Sugiyamaella lignohabitans Peroxisomal biogenesis factor 8 XP_018737126.1 806909 D 796027 CDS AWJ20_2255 30034146 complement(808942..810183) B 1 NC_031674.1 ERMES complex subunit MMM1 810183 MMM1 30034146 MMM1 Sugiyamaella lignohabitans ERMES complex subunit MMM1 XP_018737127.1 808942 R 796027 CDS AWJ20_2256 30034147 810952..812676 B 1 NC_031674.1 Essential nucleolar protein required for 40S ribosome biogenesis; associate with snR30; physically and functionally interacts with Krr1p; GO_component: GO:0030686 - 90S preribosome [Evidence IDA] [PMID 22180534]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 11027267]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0000447 - endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 11027267]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; Kri1p 812676 KRI1 30034147 KRI1 Sugiyamaella lignohabitans Kri1p XP_018737128.1 810952 D 796027 CDS AWJ20_2257 30034148 complement(812915..814231) B 1 NC_031674.1 Nuclear actin-related protein involved in chromatin remodeling; component of chromatin-remodeling enzyme complexes; GO_component: GO:0031011 - Ino80 complex [Evidence IPI] [PMID 10952318]; GO_component: GO:0031011 - Ino80 complex [Evidence IPI] [PMID 24034245]; GO_component: GO:0035267 - NuA4 histone acetyltransferase complex [Evidence IDA] [PMID 10911987]; GO_component: GO:0000812 - Swr1 complex [Evidence IDA] [PMID 14645854]; GO_component: GO:0000812 - Swr1 complex [Evidence IDA] [PMID 14690608]; GO_component: GO:0000812 - Swr1 complex [Evidence IDA] [PMID 16299513]; GO_component: GO:0000790 - nuclear chromatin [Evidence IDA] [PMID 10436015]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 10911987]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11011149]; GO_function: GO:0043140 - ATP-dependent 3'-5' DNA helicase activity [Evidence IDA] [PMID 10952318]; GO_function: GO:0003682 - chromatin binding [Evidence IDA] [PMID 10436015]; GO_function: GO:0004402 - histone acetyltransferase activity [Evidence IDA,IMP] [PMID 10911987]; GO_function: GO:0004402 - histone acetyltransferase activity [Evidence IDA] [PMID 16088870]; GO_function: GO:0042393 - histone binding [Evidence IDA] [PMID 10911987]; GO_function: GO:0031493 - nucleosomal histone binding [Evidence IDA] [PMID 10911987]; GO_process: GO:0006281 - DNA repair [Evidence IEA]; GO_process: GO:0006281 - DNA repair [Evidence IDA] [PMID 12353039]; GO_process: GO:0006281 - DNA repair [Evidence IMP] [PMID 15610740]; GO_process: GO:0006281 - DNA repair [Evidence IDA] [PMID 16135807]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0016568 - chromatin modification [Evidence IEA]; GO_process: GO:0006325 - chromatin organization [Evidence IMP,IPI] [PMID 10436015]; GO_process: GO:0006338 - chromatin remodeling [Evidence IDA] [PMID 14645854]; GO_process: GO:0016573 - histone acetylation [Evidence IDA] [PMID 10911987]; GO_process: GO:0051382 - kinetochore assembly [Evidence IMP] [PMID 17452364]; GO_process: GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence IDA] [PMID 10911987]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IMP] [PMID 8598290]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Arp4p 814231 ARP4 30034148 ARP4 Sugiyamaella lignohabitans Arp4p XP_018737129.1 812915 R 796027 CDS AWJ20_2258 30034149 join(815365..815371,815470..817166) B 1 NC_031674.1 Component of the MICOS complex; MICOS (formerly MINOS or MitOS) is a mitochondrial inner membrane complex that extends into the intermembrane space and has a role in the maintenance of crista junctions, inner membrane architecture, and formation of contact sites to the outer membrane; Mic60p is also involved in import of intermembrane space (IMS) proteins, probably by positioning Mia40p relative to the TOM complex to receive incoming proteins; ortholog of mammalian mitofilin; GO_component: GO:0061617 - MICOS complex [Evidence IDA] [PMID 21944719]; GO_component: GO:0061617 - MICOS complex [Evidence IDA] [PMID 21987634]; GO_component: GO:0061617 - MICOS complex [Evidence IDA] [PMID 22009199]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0030061 - mitochondrial crista [Evidence IDA] [PMID 19528297]; GO_component: GO:0044284 - mitochondrial crista junction [Evidence IDA] [PMID 22009199]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IDA] [PMID 19528297]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0042407 - cristae formation [Evidence IMP] [PMID 19528297]; GO_process: GO:0042407 - cristae formation [Evidence IMP] [PMID 21944719]; GO_process: GO:0042407 - cristae formation [Evidence IMP] [PMID 21987634]; GO_process: GO:0042407 - cristae formation [Evidence IMP] [PMID 22009199]; GO_process: GO:0045041 - protein import into mitochondrial intermembrane space [Evidence IMP,IPI] [PMID 21944719]; Mic60p 817166 MIC60 30034149 MIC60 Sugiyamaella lignohabitans Mic60p XP_018737130.1 815365 D 796027 CDS AWJ20_2259 30034150 complement(817387..819852) B 1 NC_031674.1 Non-canonical poly(A) polymerase; involved in nuclear RNA degradation as a component of TRAMP; catalyzes polyadenylation of hypomodified tRNAs, and snoRNA and rRNA precursors; required for mRNA surveillance and maintenance of genome integrity, serving as a link between RNA and DNA metabolism; overlapping but non-redundant functions with Trf5p; relocalizes to cytosol in response to hypoxia; PAP2 has a paralog, TRF5, that arose from the whole genome duplication; GO_component: GO:0031499 - TRAMP complex [Evidence IDA] [PMID 15828860]; GO_component: GO:0031499 - TRAMP complex [Evidence IDA] [PMID 15935758]; GO_component: GO:0031499 - TRAMP complex [Evidence IDA] [PMID 15935759]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 22932476]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 16541108]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 10066793]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22932476]; GO_function: GO:0051575 - 5'-deoxyribose-5-phosphate lyase activity [Evidence IDA,IMP] [PMID 17983848]; GO_function: GO:0034459 - ATP-dependent 3'-5' RNA helicase activity [Evidence IDA] [PMID 22532666]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016779 - nucleotidyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0004652 - polynucleotide adenylyltransferase activity [Evidence IDA] [PMID 12062100]; GO_function: GO:0004652 - polynucleotide adenylyltransferase activity [Evidence IMP,ISS] [PMID 15828860]; GO_function: GO:0004652 - polynucleotide adenylyltransferase activity [Evidence IDA] [PMID 15935758]; GO_function: GO:0004652 - polynucleotide adenylyltransferase activity [Evidence IDA,IMP] [PMID 15935759]; GO_function: GO:0004652 - polynucleotide adenylyltransferase activity [Evidence IDA,IMP] [PMID 16260630]; GO_function: GO:0004652 - polynucleotide adenylyltransferase activity [Evidence IDA,IGI] [PMID 16374505]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0034475 - U4 snRNA 3'-end processing [Evidence IGI,IMP] [PMID 16373491]; GO_process: GO:0006284 - base-excision repair [Evidence IGI,IMP] [PMID 17983848]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0071044 - histone mRNA catabolic process [Evidence IGI] [PMID 17179095]; GO_process: GO:0007067 - mitotic nuclear division [Evidence IEA]; GO_process: GO:0043629 - ncRNA polyadenylation [Evidence IGI] [PMID 15145828]; GO_process: GO:0043629 - ncRNA polyadenylation [Evidence IDA,IMP] [PMID 15828860]; GO_process: GO:0043629 - ncRNA polyadenylation [Evidence IDA] [PMID 15935758]; GO_process: GO:0043629 - ncRNA polyadenylation [Evidence IGI] [PMID 15935759]; GO_process: GO:0043629 - ncRNA polyadenylation [Evidence IGI] [PMID 16373491]; GO_process: GO:0043629 - ncRNA polyadenylation [Evidence IGI] [PMID 16374505]; GO_process: GO:0043629 - ncRNA polyadenylation [Evidence IMP] [PMID 16431988]; GO_process: GO:0045910 - negative regulation of DNA recombination [Evidence IMP] [PMID 23762389]; GO_process: GO:0071031 - nuclear mRNA surveillance of mRNA 3'-end processing [Evidence IGI] [PMID 17410208]; GO_process: GO:0071039 - nuclear polyadenylation-dependent CUT catabolic process [Evidence IGI,IMP] [PMID 15935759]; GO_process: GO:0071039 - nuclear polyadenylation-dependent CUT catabolic process [Evidence IMP] [PMID 16973436]; GO_process: GO:0071039 - nuclear polyadenylation-dependent CUT catabolic process [Evidence IMP] [PMID 18007593]; GO_process: GO:0071039 - nuclear polyadenylation-dependent CUT catabolic process [Evidence IMP] [PMID 18591258]; GO_process: GO:0071040 - nuclear polyadenylation-dependent antisense transcript catabolic process [Evidence IMP] [PMID 18022365]; GO_process: GO:0071042 - nuclear polyadenylation-dependent mRNA catabolic process [Evidence IGI] [PMID 16373491]; GO_process: GO:0071035 - nuclear polyadenylation-dependent rRNA catabolic process [Evidence IGI,IMP] [PMID 15935758]; GO_process: GO:0071035 - nuclear polyadenylation-dependent rRNA catabolic process [Evidence IMP] [PMID 16431988]; GO_process: GO:0071035 - nuclear polyadenylation-dependent rRNA catabolic process [Evidence IGI] [PMID 16541108]; GO_process: GO:0071035 - nuclear polyadenylation-dependent rRNA catabolic process [Evidence IMP] [PMID 18007593]; GO_process: GO:0071037 - nuclear polyadenylation-dependent snRNA catabolic process [Evidence IMP] [PMID 15935758]; GO_process: GO:0071037 - nuclear polyadenylation-dependent snRNA catabolic process [Evidence IMP] [PMID 16431988]; GO_process: GO:0071036 - nuclear polyadenylation-dependent snoRNA catabolic process [Evidence IGI,IMP] [PMID 15935758]; GO_process: GO:0071036 - nuclear polyadenylation-dependent snoRNA catabolic process [Evidence IGI] [PMID 16373491]; GO_process: GO:0071038 - nuclear polyadenylation-dependent tRNA catabolic process [Evidence IGI] [PMID 15145828]; GO_process: GO:0071038 - nuclear polyadenylation-dependent tRNA catabolic process [Evidence IDA] [PMID 15828860]; GO_process: GO:0071038 - nuclear polyadenylation-dependent tRNA catabolic process [Evidence IDA] [PMID 15935758]; GO_process: GO:0071038 - nuclear polyadenylation-dependent tRNA catabolic process [Evidence IMP] [PMID 16431988]; GO_process: GO:0071038 - nuclear polyadenylation-dependent tRNA catabolic process [Evidence IDA] [PMID 17643380]; GO_process: GO:0071038 - nuclear polyadenylation-dependent tRNA catabolic process [Evidence IMP] [PMID 18456844]; GO_process: GO:0071047 - polyadenylation-dependent mRNA catabolic process [Evidence IMP] [PMID 19369424]; GO_process: GO:0071051 - polyadenylation-dependent snoRNA 3'-end processing [Evidence IGI] [PMID 16373491]; GO_process: GO:0071050 - snoRNA polyadenylation [Evidence IGI] [PMID 18951092]; GO_process: GO:0006400 - tRNA modification [Evidence IMP] [PMID 22319136]; non-canonical poly(A) polymerase PAP2 819852 PAP2 30034150 PAP2 Sugiyamaella lignohabitans non-canonical poly(A) polymerase PAP2 XP_018737131.1 817387 R 796027 CDS AWJ20_2260 30034152 821500..823359 B 1 NC_031674.1 protein kinase IKS1 823359 IKS1 30034152 IKS1 Sugiyamaella lignohabitans protein kinase IKS1 XP_018737132.1 821500 D 796027 CDS AWJ20_2261 30034153 complement(823599..824246) B 1 NC_031674.1 Endosomal Rab family GTPase; required for endocytic transport and sorting of vacuolar hydrolases; required for endosomal localization of the CORVET complex; required with YPT52 for MVB biogenesis and sorting; involved in autophagy and ionic stress tolerance; geranylgeranylation required for membrane association; protein abundance increases in response to DNA replication stress; mammalian Rab5 homolog; VPS21 has a paralog, YPT53, that arose from the whole genome duplication; GO_component: GO:0005768 - endosome [Evidence IEA]; GO_component: GO:0010008 - endosome membrane [Evidence IEA]; GO_component: GO:0005770 - late endosome [Evidence IMP] [PMID 11872141]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0031966 - mitochondrial membrane [Evidence IEA]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IDA] [PMID 16407407]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0005525 - GTP binding [Evidence IEA,IEA]; GO_function: GO:0003924 - GTPase activity [Evidence IDA] [PMID 11210571]; GO_function: GO:0003924 - GTPase activity [Evidence IMP] [PMID 8163546]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006895 - Golgi to endosome transport [Evidence IGI,IMP] [PMID 22748138]; GO_process: GO:0006895 - Golgi to endosome transport [Evidence IGI,IMP] [PMID 23612966]; GO_process: GO:0006897 - endocytosis [Evidence IMP] [PMID 8163546]; GO_process: GO:0032511 - late endosome to vacuole transport via multivesicular body sorting pathway [Evidence IGI] [PMID 22748138]; GO_process: GO:0036258 - multivesicular body assembly [Evidence IGI] [PMID 22748138]; GO_process: GO:0036010 - protein localization to endosome [Evidence IGI] [PMID 23264632]; GO_process: GO:0006623 - protein targeting to vacuole [Evidence IMP] [PMID 8163546]; GO_process: GO:0015031 - protein transport [Evidence IEA,IEA]; GO_process: GO:0007264 - small GTPase mediated signal transduction [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0000011 - vacuole inheritance [Evidence IMP] [PMID 1493335]; Rab family GTPase VPS21 824246 VPS21 30034153 VPS21 Sugiyamaella lignohabitans Rab family GTPase VPS21 XP_018737133.1 823599 R 796027 CDS AWJ20_2262 30034154 complement(826242..826967) B 1 NC_031674.1 AdoMet-dependent proline methyltransferase; catalyzes the dimethylation of ribosomal proteins Rpl12 and Rps25 at N-terminal proline residues; has a role in protein synthesis; fusion protein localizes to the cytoplasm; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 20481588]; GO_function: GO:0071885 - N-terminal protein N-methyltransferase activity [Evidence IDA,IMP] [PMID 20481588]; GO_function: GO:0008168 - methyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0018016 - N-terminal peptidyl-proline dimethylation [Evidence IDA,IMP] [PMID 20481588]; GO_process: GO:0002181 - cytoplasmic translation [Evidence IGI,IMP] [PMID 19055778]; GO_process: GO:0032259 - methylation [Evidence IEA]; Tae1p 826967 TAE1 30034154 TAE1 Sugiyamaella lignohabitans Tae1p XP_018737134.1 826242 R 796027 CDS AWJ20_2263 30034155 829631..830581 B 1 NC_031674.1 Conserved ER protein translocation channel; essential subunit of Sec61 complex (Sec61p, Sbh1p, and Sss1p); forms channel for SRP-dependent protein import; with Sec63 complex allows SRP-independent protein import into ER; involved in posttranslational soluble protein import into the ER, ERAD of soluble substrates, and misfolded soluble protein export from the ER; GO_component: GO:0005784 - Sec61 translocon complex [Evidence IDA] [PMID 8612571]; GO_component: GO:0005784 - Sec61 translocon complex [Evidence IDA] [PMID 9252322]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_function: GO:0015450 - P-P-bond-hydrolysis-driven protein transmembrane transporter activity [Evidence IMP] [PMID 1550957]; GO_function: GO:0015450 - P-P-bond-hydrolysis-driven protein transmembrane transporter activity [Evidence IDA] [PMID 9252322]; GO_function: GO:0015197 - peptide transporter activity [Evidence IMP] [PMID 10758167]; GO_function: GO:0005048 - signal sequence binding [Evidence IDA] [PMID 12134063]; GO_process: GO:0030433 - ER-associated ubiquitin-dependent protein catabolic process [Evidence IPI] [PMID 19696741]; GO_process: GO:0030433 - ER-associated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 24314051]; GO_process: GO:0006616 - SRP-dependent cotranslational protein targeting to membrane, translocation [Evidence IDA] [PMID 11076036]; GO_process: GO:0044743 - intracellular protein transmembrane import [Evidence IMP] [PMID 24314051]; GO_process: GO:0070843 - misfolded protein transport [Evidence IMP] [PMID 24314051]; GO_process: GO:0031204 - posttranslational protein targeting to membrane, translocation [Evidence IDA] [PMID 7758110]; GO_process: GO:0031204 - posttranslational protein targeting to membrane, translocation [Evidence IDA] [PMID 9252322]; GO_process: GO:0031204 - posttranslational protein targeting to membrane, translocation [Evidence IMP] [PMID 9843581]; GO_process: GO:0015031 - protein transport [Evidence IEA,IEA]; GO_process: GO:0030970 - retrograde protein transport, ER to cytosol [Evidence IMP] [PMID 10635318]; GO_process: GO:0030970 - retrograde protein transport, ER to cytosol [Evidence IMP] [PMID 9303298]; GO_process: GO:0006810 - transport [Evidence IEA]; translocon subunit SEC61 830581 SEC61 30034155 SEC61 Sugiyamaella lignohabitans translocon subunit SEC61 XP_018737135.1 829631 D 796027 CDS AWJ20_2264 30034156 831318..833534 B 1 NC_031674.1 Essential nucleolar protein; putative DEAD-box RNA helicase required for maintenance of M1 dsRNA virus; involved in biogenesis of large (60S) ribosomal subunits; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 13680366]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004004 - ATP-dependent RNA helicase activity [Evidence ISS] [PMID 7754712]; GO_function: GO:0008026 - ATP-dependent helicase activity [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0004386 - helicase activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0000466 - maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 13680366]; GO_process: GO:0000463 - maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 13680366]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0042273 - ribosomal large subunit biogenesis [Evidence IMP] [PMID 13680366]; GO_process: GO:0042273 - ribosomal large subunit biogenesis [Evidence IMP] [PMID 7739558]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; Mak5p 833534 MAK5 30034156 MAK5 Sugiyamaella lignohabitans Mak5p XP_018737136.1 831318 D 796027 CDS AWJ20_2265 30034157 complement(833707..835023) B 1 NC_031674.1 Polypeptide release factor (eRF1) in translation termination; mutant form acts as a recessive omnipotent suppressor; methylated by Mtq2p-Trm112p in ternary complex eRF1-eRF3-GTP; mutation of methylation site confers resistance to zymocin; has a role in cytokinesis through interaction with Mlc1p; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0010494 - cytoplasmic stress granule [Evidence IDA] [PMID 23451152]; GO_component: GO:0005829 - cytosol [Evidence IPI] [PMID 1474892]; GO_component: GO:0018444 - translation release factor complex [Evidence IDA] [PMID 7556078]; GO_function: GO:0003747 - translation release factor activity [Evidence IDA] [PMID 20947765]; GO_function: GO:0016149 - translation release factor activity, codon specific [Evidence IEA]; GO_function: GO:0016149 - translation release factor activity, codon specific [Evidence IMP,ISS] [PMID 9182990]; GO_process: GO:0006353 - DNA-templated transcription, termination [Evidence IMP] [PMID 23109428]; GO_process: GO:0006412 - translation [Evidence IEA]; GO_process: GO:0006415 - translational termination [Evidence IEA]; GO_process: GO:0006415 - translational termination [Evidence IGI,IMP] [PMID 18724935]; GO_process: GO:0006415 - translational termination [Evidence IDA] [PMID 20947765]; GO_process: GO:0006415 - translational termination [Evidence IMP,ISS] [PMID 9182990]; translation termination factor eRF1 835023 SUP45 30034157 SUP45 Sugiyamaella lignohabitans translation termination factor eRF1 XP_018737137.1 833707 R 796027 CDS AWJ20_2266 30034158 complement(835905..837179) B 1 NC_031674.1 Highly conserved zinc metalloprotease; functions in two steps of a-factor maturation, C-terminal CAAX proteolysis and the first step of N-terminal proteolytic processing; contains multiple transmembrane spans; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0030176 - integral component of endoplasmic reticulum membrane [Evidence IDA] [PMID 11581258]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IDA] [PMID 16407407]; GO_component: GO:0005637 - nuclear inner membrane [Evidence IMP] [PMID 18923140]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004222 - metalloendopeptidase activity [Evidence IEA]; GO_function: GO:0004222 - metalloendopeptidase activity [Evidence IDA] [PMID 11581258]; GO_function: GO:0004222 - metalloendopeptidase activity [Evidence IMP,ISS] [PMID 9065405]; GO_function: GO:0008237 - metallopeptidase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_process: GO:0071586 - CAAX-box protein processing [Evidence IMP] [PMID 9065405]; GO_process: GO:0007323 - peptide pheromone maturation [Evidence IDA] [PMID 11581258]; GO_process: GO:0007323 - peptide pheromone maturation [Evidence IMP] [PMID 9065405]; GO_process: GO:0006508 - proteolysis [Evidence IEA,IEA]; GO_process: GO:0019236 - response to pheromone [Evidence IEA]; Ste24p 837179 STE24 30034158 STE24 Sugiyamaella lignohabitans Ste24p XP_018737138.1 835905 R 796027 CDS AWJ20_2267 30034159 complement(838466..840064) B 1 NC_031674.1 High affinity methionine permease; integral membrane protein with 13 putative membrane-spanning regions; also involved in cysteine uptake; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0005887 - integral component of plasma membrane [Evidence ISS] [PMID 8893857]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA,IEA]; GO_function: GO:0000102 - L-methionine secondary active transmembrane transporter activity [Evidence IDA] [PMID 8893857]; GO_function: GO:0015171 - amino acid transmembrane transporter activity [Evidence IEA]; GO_process: GO:0003333 - amino acid transmembrane transport [Evidence IEA]; GO_process: GO:0006865 - amino acid transport [Evidence IEA]; GO_process: GO:0042883 - cysteine transport [Evidence IDA] [PMID 11330701]; GO_process: GO:0044690 - methionine import [Evidence IGI,IMP] [PMID 8893857]; GO_process: GO:0015821 - methionine transport [Evidence IDA] [PMID 11330701]; GO_process: GO:0000101 - sulfur amino acid transport [Evidence IMP] [PMID 8893857]; GO_process: GO:0006810 - transport [Evidence IEA]; Mup1p 840064 MUP1 30034159 MUP1 Sugiyamaella lignohabitans Mup1p XP_018737139.1 838466 R 796027 CDS AWJ20_2268 30034160 842283..843428 B 1 NC_031674.1 uncharacterized protein 843428 30034160 AWJ20_2268 Sugiyamaella lignohabitans uncharacterized protein XP_018737140.1 842283 D 796027 CDS AWJ20_2269 30034161 847646..849001 B 1 NC_031674.1 Component of the Rpd3L histone deacetylase complex; required for its structural integrity and catalytic activity, involved in transcriptional silencing and required for sporulation; relocalizes to the cytosol in response to hypoxia; cells defective in SDS3 display pleiotropic phenotypes; GO_component: GO:0033698 - Rpd3L complex [Evidence IDA] [PMID 16286007]; GO_component: GO:0033698 - Rpd3L complex [Evidence IDA] [PMID 16286008]; GO_component: GO:0033698 - Rpd3L complex [Evidence IDA] [PMID 16314178]; GO_component: GO:0033698 - Rpd3L complex [Evidence IDA] [PMID 19040720]; GO_component: GO:0070210 - Rpd3L-Expanded complex [Evidence IDA] [PMID 19040720]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 22932476]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22932476]; GO_function: GO:0004407 - histone deacetylase activity [Evidence IMP] [PMID 11024051]; GO_process: GO:0016568 - chromatin modification [Evidence IEA]; GO_process: GO:0006342 - chromatin silencing [Evidence IGI,IMP] [PMID 11024051]; GO_process: GO:0016575 - histone deacetylation [Evidence IMP,IPI] [PMID 11024051]; GO_process: GO:0016575 - histone deacetylation [Evidence IMP] [PMID 16314178]; GO_process: GO:0061188 - negative regulation of chromatin silencing at rDNA [Evidence IMP] [PMID 16286008]; GO_process: GO:0061186 - negative regulation of chromatin silencing at silent mating-type cassette [Evidence IMP] [PMID 16286008]; GO_process: GO:0031939 - negative regulation of chromatin silencing at telomere [Evidence IMP] [PMID 16286008]; GO_process: GO:0031939 - negative regulation of chromatin silencing at telomere [Evidence IMP] [PMID 19372273]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 17210643]; GO_process: GO:0061408 - positive regulation of transcription from RNA polymerase II promoter in response to heat stress [Evidence IMP] [PMID 20398213]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Sds3p 849001 SDS3 30034161 SDS3 Sugiyamaella lignohabitans Sds3p XP_018737141.1 847646 D 796027 CDS AWJ20_2270 30034163 850608..852578 B 1 NC_031674.1 Putative mannosyltransferase involved in protein glycosylation; member of the KRE2/MNT1 mannosyltransferase family; KTR5 has a paralog, KTR7, that arose from the whole genome duplication; GO_component: GO:0005794 - Golgi apparatus [Evidence ISS] [PMID 9090056]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA,IEA]; GO_function: GO:0000030 - mannosyltransferase activity [Evidence IEA]; GO_function: GO:0000030 - mannosyltransferase activity [Evidence ISS] [PMID 9090056]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA]; GO_process: GO:0097502 - mannosylation [Evidence IC] [PMID 9090056]; GO_process: GO:0006486 - protein glycosylation [Evidence IEA]; Ktr5p 852578 KTR5 30034163 KTR5 Sugiyamaella lignohabitans Ktr5p XP_018737142.1 850608 D 796027 CDS AWJ20_2271 30034164 complement(853112..854551) B 1 NC_031674.1 stress-regulated transcription factor RPN4 854551 RPN4 30034164 RPN4 Sugiyamaella lignohabitans stress-regulated transcription factor RPN4 XP_018737143.1 853112 R 796027 CDS AWJ20_2272 30034165 857137..859443 B 1 NC_031674.1 5' to 3' DNA helicase; involved in nucleotide excision repair and transcription; subunit of RNA polII initiation factor TFIIH and of Nucleotide Excision Repair Factor 3 (NEF3); homolog of human XPD protein; mutant has aneuploidy tolerance; protein abundance increases in response to DNA replication stress; GO_component: GO:0000439 - core TFIIH complex [Evidence IDA] [PMID 14500720]; GO_component: GO:0000439 - core TFIIH complex [Evidence IDA] [PMID 19818408]; GO_component: GO:0005675 - holo TFIIH complex [Evidence IDA] [PMID 19818408]; GO_component: GO:0000112 - nucleotide-excision repair factor 3 complex [Evidence IDA] [PMID 8855246]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0043141 - ATP-dependent 5'-3' DNA helicase activity [Evidence IDA] [PMID 2827162]; GO_function: GO:0004003 - ATP-dependent DNA helicase activity [Evidence IEA]; GO_function: GO:0008026 - ATP-dependent helicase activity [Evidence IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0000990 - core RNA polymerase binding transcription factor activity [Evidence IC] [PMID 19818408]; GO_function: GO:0003684 - damaged DNA binding [Evidence IDA] [PMID 8132553]; GO_function: GO:0004386 - helicase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016817 - hydrolase activity, acting on acid anhydrides [Evidence IEA]; GO_function: GO:0016818 - hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides [Evidence IEA]; GO_function: GO:0051536 - iron-sulfur cluster binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0032508 - DNA duplex unwinding [Evidence IEA]; GO_process: GO:0006281 - DNA repair [Evidence IEA]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0006139 - nucleobase-containing compound metabolic process [Evidence IEA]; GO_process: GO:0006289 - nucleotide-excision repair [Evidence IEA]; GO_process: GO:0033683 - nucleotide-excision repair, DNA incision [Evidence IDA] [PMID 8631896]; GO_process: GO:0070816 - phosphorylation of RNA polymerase II C-terminal domain [Evidence IDA] [PMID 19450536]; GO_process: GO:0070816 - phosphorylation of RNA polymerase II C-terminal domain [Evidence IDA] [PMID 19679665]; GO_process: GO:0045951 - positive regulation of mitotic recombination [Evidence IMP] [PMID 24189665]; GO_process: GO:0000019 - regulation of mitotic recombination [Evidence IMP] [PMID 10713167]; GO_process: GO:0000019 - regulation of mitotic recombination [Evidence IMP] [PMID 9799251]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0010525 - regulation of transposition, RNA-mediated [Evidence IMP] [PMID 10713167]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IDA] [PMID 19818408]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; TFIIH/NER complex ATP-dependent 5'-3' DNA helicase subunit RAD3 859443 RAD3 30034165 RAD3 Sugiyamaella lignohabitans TFIIH/NER complex ATP-dependent 5'-3' DNA helicase subunit RAD3 XP_018737144.1 857137 D 796027 CDS AWJ20_2273 30034166 860935..862557 B 1 NC_031674.1 Putative amidase; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0004040 - amidase activity [Evidence IEA]; GO_function: GO:0004040 - amidase activity [Evidence ISS] [PMID 2263500]; GO_function: GO:0016884 - carbon-nitrogen ligase activity, with glutamine as amido-N-donor [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016811 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides [Evidence IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0008152 - metabolic process [Evidence IEA,IEA,IEA]; Amd2p 862557 AMD2 30034166 AMD2 Sugiyamaella lignohabitans Amd2p XP_018737145.1 860935 D 796027 CDS AWJ20_2274 30034167 complement(862786..864387) B 1 NC_031674.1 Putative transporter in the major facilitator superfamily; member of the 12-spanner drug:H(+) antiporter DHA1 family; mutations in membrane-spanning domains permit cation and histidinol uptake; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005886 - plasma membrane [Evidence ISS] [PMID 8955402]; GO_function: GO:0015665 - alcohol transmembrane transporter activity [Evidence IMP] [PMID 2405251]; GO_function: GO:0022890 - inorganic cation transmembrane transporter activity [Evidence IMP] [PMID 8955402]; GO_process: GO:0006812 - cation transport [Evidence IMP] [PMID 8955402]; GO_process: GO:0015850 - organic hydroxy compound transport [Evidence IMP] [PMID 2405251]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Hol1p 864387 HOL1 30034167 HOL1 Sugiyamaella lignohabitans Hol1p XP_018737146.1 862786 R 796027 CDS AWJ20_2275 30034168 867187..867699 B 1 NC_031674.1 uncharacterized protein 867699 30034168 AWJ20_2275 Sugiyamaella lignohabitans uncharacterized protein XP_018737147.1 867187 D 796027 CDS AWJ20_2276 30034169 complement(867921..870398) B 1 NC_031674.1 chromatin-binding protein CTF4 870398 CTF4 30034169 CTF4 Sugiyamaella lignohabitans chromatin-binding protein CTF4 XP_018737148.1 867921 R 796027 CDS AWJ20_2277 30034170 870960..871739 B 1 NC_031674.1 uncharacterized protein 871739 30034170 AWJ20_2277 Sugiyamaella lignohabitans uncharacterized protein XP_018737149.1 870960 D 796027 CDS AWJ20_2278 30034171 complement(871938..873827) B 1 NC_031674.1 uncharacterized protein 873827 30034171 AWJ20_2278 Sugiyamaella lignohabitans uncharacterized protein XP_018737150.1 871938 R 796027 CDS AWJ20_2279 30034172 complement(875950..877872) B 1 NC_031674.1 uncharacterized protein 877872 30034172 AWJ20_2279 Sugiyamaella lignohabitans uncharacterized protein XP_018737151.1 875950 R 796027 CDS AWJ20_2280 30034174 880201..881082 B 1 NC_031674.1 Trans-aconitate methyltransferase; cytosolic enzyme that catalyzes the methyl esterification of 3-isopropylmalate, an intermediate of the leucine biosynthetic pathway, and trans-aconitate, which inhibits the citric acid cycle; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 11695919]; GO_function: GO:0008168 - methyltransferase activity [Evidence IEA]; GO_function: GO:0046547 - trans-aconitate 3-methyltransferase activity [Evidence IEA]; GO_function: GO:0046547 - trans-aconitate 3-methyltransferase activity [Evidence IDA] [PMID 11695919]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0032259 - methylation [Evidence IEA]; Tmt1p 881082 TMT1 30034174 TMT1 Sugiyamaella lignohabitans Tmt1p XP_018737152.1 880201 D 796027 CDS AWJ20_2281 30034175 complement(881240..882298) B 1 NC_031674.1 Cytoplasmic NAD(+)-dependent protein deacetylase; member of the silencing information regulator 2 (Sir2) family of NAD(+)-dependent protein deacetylases; modulates nucleolar (rDNA) and telomeric silencing; possesses NAD(+)-dependent histone deacetylase activity in vitro; contains a nuclear export signal (NES); function regulated by its nuclear export; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11226170]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 17110954]; GO_function: GO:0051287 - NAD binding [Evidence IEA]; GO_function: GO:0070403 - NAD+ binding [Evidence IEA]; GO_function: GO:0017136 - NAD-dependent histone deacetylase activity [Evidence IDA] [PMID 10811920]; GO_function: GO:0017136 - NAD-dependent histone deacetylase activity [Evidence IMP] [PMID 10841563]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016811 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0000183 - chromatin silencing at rDNA [Evidence IMP] [PMID 11226170]; GO_process: GO:0000183 - chromatin silencing at rDNA [Evidence IMP] [PMID 16051752]; GO_process: GO:0001300 - chronological cell aging [Evidence IGI,IMP] [PMID 16051752]; GO_process: GO:0031939 - negative regulation of chromatin silencing at telomere [Evidence IMP] [PMID 11226170]; GO_process: GO:0045950 - negative regulation of mitotic recombination [Evidence IGI,IMP] [PMID 16051752]; GO_process: GO:0006476 - protein deacetylation [Evidence IEA]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; histone deacetylase HST2 882298 HST2 30034175 HST2 Sugiyamaella lignohabitans histone deacetylase HST2 XP_018737153.1 881240 R 796027 CDS AWJ20_2282 30034176 883327..886815 B 1 NC_031674.1 Component of the ribosome quality control complex (RQC); RQC (Rqc1p-Rkr1p-Tae2p-Cdc48p-Npl4p-Ufd1p) is a ribosome-bound complex required for the degradation of polypeptides arising from stalled translation involved in protein translation; monitors translation stress and signals this to Hsf1p; may interact with ribosomes, based on co-purification experiments; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm; GO_component: GO:1990112 - RQC complex [Evidence IDA] [PMID 23178123]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0010494 - cytoplasmic stress granule [Evidence IDA] [PMID 23222640]; GO_component: GO:0022625 - cytosolic large ribosomal subunit [Evidence IDA] [PMID 23479637]; GO_component: GO:0005840 - ribosome [Evidence IDA] [PMID 16702403]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_process: GO:0002181 - cytoplasmic translation [Evidence IGI,IMP] [PMID 20691087]; GO_process: GO:1990116 - ribosome-associated ubiquitin-dependent protein catabolic process [Evidence IGI,IMP] [PMID 23479637]; GO_process: GO:0006412 - translation [Evidence IEA]; Tae2p 886815 TAE2 30034176 TAE2 Sugiyamaella lignohabitans Tae2p XP_018737154.1 883327 D 796027 CDS AWJ20_2283 30034177 complement(887005..887598) B 1 NC_031674.1 Zeta subunit of the coatomer complex (COPI); COPI coats Golgi-derived transport vesicles; involved in retrograde transport between Golgi and ER; GO_component: GO:0030126 - COPI vesicle coat [Evidence IMP,ISS] [PMID 8617224]; GO_component: GO:0030663 - COPI-coated vesicle membrane [Evidence IEA]; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0031410 - cytoplasmic vesicle [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006890 - retrograde vesicle-mediated transport, Golgi to ER [Evidence IMP] [PMID 8617224]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IEA]; Ret3p 887598 RET3 30034177 RET3 Sugiyamaella lignohabitans Ret3p XP_018737155.1 887005 R 796027 CDS AWJ20_2284 30034178 888608..889438 B 1 NC_031674.1 TFIID subunit (47 kDa); involved in promoter binding and RNA polymerase II transcription initiation; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005669 - transcription factor TFIID complex [Evidence IDA] [PMID 10788514]; GO_component: GO:0005669 - transcription factor TFIID complex [Evidence IDA] [PMID 15448131]; GO_function: GO:0001075 - RNA polymerase II core promoter sequence-specific DNA binding transcription factor activity involved in preinitiation complex assembly [Evidence IC] [PMID 15448131]; GO_function: GO:0003682 - chromatin binding [Evidence IDA] [PMID 17660549]; GO_process: GO:0051123 - RNA polymerase II transcriptional preinitiation complex assembly [Evidence IC] [PMID 10788514]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IDA] [PMID 12138208]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IDA] [PMID 15448131]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Taf3p 889438 TAF3 30034178 TAF3 Sugiyamaella lignohabitans Taf3p XP_018737156.1 888608 D 796027 CDS AWJ20_2285 30034179 complement(889769..890290) B 1 NC_031674.1 GTPase-activating protein (GAP); contains Rho1p-specific GAP activity, interacting with activated forms of Rho1p; functions along with Sac7p as a negative regulator of the Pkc1p-mediated cell wall integrity signaling pathway; negative regulator of cell wall 1,3-beta-glucan biosynthesis; required for efficient cell fusion; contains a RhoGAP domain and three Lin-11-Isl1-Mec-3 (LIM) domains; GO_component: GO:0005933 - cellular bud [Evidence IEA]; GO_component: GO:0005935 - cellular bud neck [Evidence IEA]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 11447600]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 14562095]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 23613772]; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 11447600]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0000131 - incipient cellular bud site [Evidence IDA] [PMID 11447600]; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 15514049]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0030427 - site of polarized growth [Evidence IDA] [PMID 23613772]; GO_function: GO:0005096 - GTPase activator activity [Evidence IEA]; GO_function: GO:0005100 - Rho GTPase activator activity [Evidence IDA] [PMID 15514049]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0000755 - cytogamy [Evidence IGI,IMP] [PMID 15514049]; GO_process: GO:0035024 - negative regulation of Rho protein signal transduction [Evidence IGI] [PMID 11447600]; GO_process: GO:0035024 - negative regulation of Rho protein signal transduction [Evidence IGI,IMP] [PMID 11713681]; GO_process: GO:0090038 - negative regulation of protein kinase C signaling [Evidence IGI,IMP] [PMID 11713681]; GO_process: GO:0032321 - positive regulation of Rho GTPase activity [Evidence IDA] [PMID 15514049]; GO_process: GO:0090334 - regulation of cell wall (1->3)-beta-D-glucan biosynthetic process [Evidence IGI] [PMID 11447600]; GO_process: GO:0060237 - regulation of fungal-type cell wall organization [Evidence IGI] [PMID 11447600]; GO_process: GO:0060237 - regulation of fungal-type cell wall organization [Evidence IGI,IMP] [PMID 11713681]; GO_process: GO:0007165 - signal transduction [Evidence IEA]; GO_process: GO:0030435 - sporulation resulting in formation of a cellular spore [Evidence IEA]; Lrg1p 890290 LRG1 30034179 LRG1 Sugiyamaella lignohabitans Lrg1p XP_018737157.1 889769 R 796027 CDS AWJ20_2286 30034180 complement(890454..894704) B 1 NC_031674.1 GTPase-activating protein (GAP); contains Rho1p-specific GAP activity, interacting with activated forms of Rho1p; functions along with Sac7p as a negative regulator of the Pkc1p-mediated cell wall integrity signaling pathway; negative regulator of cell wall 1,3-beta-glucan biosynthesis; required for efficient cell fusion; contains a RhoGAP domain and three Lin-11-Isl1-Mec-3 (LIM) domains; GO_component: GO:0005933 - cellular bud [Evidence IEA]; GO_component: GO:0005935 - cellular bud neck [Evidence IEA]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 11447600]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 14562095]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 23613772]; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 11447600]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0000131 - incipient cellular bud site [Evidence IDA] [PMID 11447600]; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 15514049]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0030427 - site of polarized growth [Evidence IDA] [PMID 23613772]; GO_function: GO:0005096 - GTPase activator activity [Evidence IEA]; GO_function: GO:0005100 - Rho GTPase activator activity [Evidence IDA] [PMID 15514049]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0000755 - cytogamy [Evidence IGI,IMP] [PMID 15514049]; GO_process: GO:0035024 - negative regulation of Rho protein signal transduction [Evidence IGI] [PMID 11447600]; GO_process: GO:0035024 - negative regulation of Rho protein signal transduction [Evidence IGI,IMP] [PMID 11713681]; GO_process: GO:0090038 - negative regulation of protein kinase C signaling [Evidence IGI,IMP] [PMID 11713681]; GO_process: GO:0032321 - positive regulation of Rho GTPase activity [Evidence IDA] [PMID 15514049]; GO_process: GO:0090334 - regulation of cell wall (1->3)-beta-D-glucan biosynthetic process [Evidence IGI] [PMID 11447600]; GO_process: GO:0060237 - regulation of fungal-type cell wall organization [Evidence IGI] [PMID 11447600]; GO_process: GO:0060237 - regulation of fungal-type cell wall organization [Evidence IGI,IMP] [PMID 11713681]; GO_process: GO:0007165 - signal transduction [Evidence IEA]; GO_process: GO:0030435 - sporulation resulting in formation of a cellular spore [Evidence IEA]; Lrg1p 894704 LRG1 30034180 LRG1 Sugiyamaella lignohabitans Lrg1p XP_018737158.1 890454 R 796027 CDS AWJ20_2287 30034181 897720..900917 B 1 NC_031674.1 Protein BRE4 900917 30034181 AWJ20_2287 Sugiyamaella lignohabitans Protein BRE4 XP_018737159.1 897720 D 796027 CDS AWJ20_2288 30034182 901341..903587 B 1 NC_031674.1 Peripheral membrane protein required for autophagic vesicle formation; also required for vesicle formation during pexophagy and the cytoplasm-to-vaucole targeting (Cvt) pathway; involved in Atg9p cycling between the phagophore assembly site and mitochondria; essential for cell cycle progression from G2/M to G1 under nitrogen starvation; forms cytoplasmic foci upon DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11382760]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0019898 - extrinsic component of membrane [Evidence IDA] [PMID 11382760]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0000407 - pre-autophagosomal structure [Evidence IDA] [PMID 11689437]; GO_component: GO:0000407 - pre-autophagosomal structure [Evidence IDA] [PMID 18497569]; GO_component: GO:0034045 - pre-autophagosomal structure membrane [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0032258 - CVT pathway [Evidence IMP] [PMID 11382761]; GO_process: GO:0000045 - autophagic vacuole assembly [Evidence IMP] [PMID 11382761]; GO_process: GO:0006914 - autophagy [Evidence IEA,IEA]; GO_process: GO:0006914 - autophagy [Evidence IMP] [PMID 23382696]; GO_process: GO:0044805 - late nucleophagy [Evidence IMP] [PMID 22768199]; GO_process: GO:0000422 - mitochondrion degradation [Evidence IMP] [PMID 19793921]; GO_process: GO:0030242 - peroxisome degradation [Evidence IDA,IEP,IMP] [PMID 11382760]; GO_process: GO:0034727 - piecemeal microautophagy of nucleus [Evidence IMP] [PMID 18701704]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Atg2p 903587 ATG2 30034182 ATG2 Sugiyamaella lignohabitans Atg2p XP_018737160.1 901341 D 796027 CDS AWJ20_2289 30034183 903791..906649 B 1 NC_031674.1 Peripheral membrane protein required for autophagic vesicle formation; also required for vesicle formation during pexophagy and the cytoplasm-to-vaucole targeting (Cvt) pathway; involved in Atg9p cycling between the phagophore assembly site and mitochondria; essential for cell cycle progression from G2/M to G1 under nitrogen starvation; forms cytoplasmic foci upon DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11382760]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0019898 - extrinsic component of membrane [Evidence IDA] [PMID 11382760]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0000407 - pre-autophagosomal structure [Evidence IDA] [PMID 11689437]; GO_component: GO:0000407 - pre-autophagosomal structure [Evidence IDA] [PMID 18497569]; GO_component: GO:0034045 - pre-autophagosomal structure membrane [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0032258 - CVT pathway [Evidence IMP] [PMID 11382761]; GO_process: GO:0000045 - autophagic vacuole assembly [Evidence IMP] [PMID 11382761]; GO_process: GO:0006914 - autophagy [Evidence IEA,IEA]; GO_process: GO:0006914 - autophagy [Evidence IMP] [PMID 23382696]; GO_process: GO:0044805 - late nucleophagy [Evidence IMP] [PMID 22768199]; GO_process: GO:0000422 - mitochondrion degradation [Evidence IMP] [PMID 19793921]; GO_process: GO:0030242 - peroxisome degradation [Evidence IDA,IEP,IMP] [PMID 11382760]; GO_process: GO:0034727 - piecemeal microautophagy of nucleus [Evidence IMP] [PMID 18701704]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Atg2p 906649 ATG2 30034183 ATG2 Sugiyamaella lignohabitans Atg2p XP_018737161.1 903791 D 796027 CDS AWJ20_2290 30034185 complement(907083..908549) B 1 NC_031674.1 General amino acid permease; Gap1p senses the presence of amino acid substrates to regulate localization to the plasma membrane when needed; essential for invasive growth; GO_component: GO:0030134 - ER to Golgi transport vesicle [Evidence IDA] [PMID 12499351]; GO_component: GO:0005768 - endosome [Evidence IDA] [PMID 15039776]; GO_component: GO:0000328 - fungal-type vacuole lumen [Evidence IDA] [PMID 15039776]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0005887 - integral component of plasma membrane [Evidence IDA] [PMID 9199164]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA,IEA]; GO_component: GO:0005771 - multivesicular body [Evidence IMP] [PMID 14523026]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 15623581]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 15707981]; GO_function: GO:0015193 - L-proline transmembrane transporter activity [Evidence IGI] [PMID 14968425]; GO_function: GO:0015171 - amino acid transmembrane transporter activity [Evidence IEA]; GO_function: GO:0015171 - amino acid transmembrane transporter activity [Evidence IMP] [PMID 6759873]; GO_function: GO:0015203 - polyamine transmembrane transporter activity [Evidence IMP] [PMID 15707981]; GO_process: GO:0003333 - amino acid transmembrane transport [Evidence IEA]; GO_process: GO:0006865 - amino acid transport [Evidence IEA,IEA]; GO_process: GO:0006865 - amino acid transport [Evidence IMP] [PMID 6759873]; GO_process: GO:0015846 - polyamine transport [Evidence IMP] [PMID 15707981]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; amino acid permease GAP1 908549 GAP1 30034185 GAP1 Sugiyamaella lignohabitans amino acid permease GAP1 XP_018737162.1 907083 R 796027 CDS AWJ20_2291 30034186 909885..911462 B 1 NC_031674.1 uncharacterized protein 911462 30034186 AWJ20_2291 Sugiyamaella lignohabitans uncharacterized protein XP_018737163.1 909885 D 796027 CDS AWJ20_2292 30034187 complement(911524..913821) B 1 NC_031674.1 Mitochondrial hypothetical protein; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; Sov1p 913821 SOV1 30034187 SOV1 Sugiyamaella lignohabitans Sov1p XP_018737164.1 911524 R 796027 CDS AWJ20_2293 30034188 complement(914026..918042) B 1 NC_031674.1 Vacuolar glutathione S-conjugate transporter; member of ATP-binding cassette family; ATPase activity required to support vacuole fusion; forms stable complexes with vacuole fusion machinery; regulates Vam7p recruitment to vacuoles; has role in detoxifying metals such as cadmium, mercury, and arsenite; also transports unconjugated bilirubin, selenodigluthatione, and oxidized glutathione; similar to human cystic fibrosis protein CFTR; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 23658021]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 8692889]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016887 - ATPase activity [Evidence IEA]; GO_function: GO:0042626 - ATPase activity, coupled to transmembrane movement of substances [Evidence IEA]; GO_function: GO:0015127 - bilirubin transmembrane transporter activity [Evidence IGI,IMP] [PMID 10790694]; GO_function: GO:0015431 - glutathione S-conjugate-exporting ATPase activity [Evidence IDA] [PMID 10220408]; GO_function: GO:0015431 - glutathione S-conjugate-exporting ATPase activity [Evidence IDA] [PMID 12383937]; GO_function: GO:0015431 - glutathione S-conjugate-exporting ATPase activity [Evidence IDA] [PMID 12755704]; GO_function: GO:0015431 - glutathione S-conjugate-exporting ATPase activity [Evidence IDA] [PMID 9217966]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0015723 - bilirubin transport [Evidence IGI,IMP] [PMID 10790694]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0046686 - response to cadmium ion [Evidence IEA]; GO_process: GO:0010038 - response to metal ion [Evidence IDA] [PMID 10220408]; GO_process: GO:0010038 - response to metal ion [Evidence IDA] [PMID 12755704]; GO_process: GO:0010038 - response to metal ion [Evidence IDA] [PMID 9217966]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IMP] [PMID 10790694]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; GO_process: GO:0042144 - vacuole fusion, non-autophagic [Evidence IMP] [PMID 23658021]; ATP-binding cassette glutathione S-conjugate transporter YCF1 918042 YCF1 30034188 YCF1 Sugiyamaella lignohabitans ATP-binding cassette glutathione S-conjugate transporter YCF1 XP_018737165.1 914026 R 796027 CDS AWJ20_2294 30034189 complement(925526..926143) B 1 NC_031674.1 Pyrimidine nucleotidase; responsible for production of nicotinamide riboside and nicotinic acid riboside; overexpression suppresses the 6-AU sensitivity of transcription elongation factor S-II, as well as resistance to other pyrimidine derivatives; SDT1 has a paralog, PHM8, that arose from the whole genome duplication; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0008252 - nucleotidase activity [Evidence IDA] [PMID 11934891]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0006206 - pyrimidine nucleobase metabolic process [Evidence IMP] [PMID 11934891]; Sdt1p 926143 SDT1 30034189 SDT1 Sugiyamaella lignohabitans Sdt1p XP_018737166.1 925526 R 796027 CDS AWJ20_2295 30034190 complement(927087..928073) B 1 NC_031674.1 Subunit of mitochondrial NAD(+)-dependent isocitrate dehydrogenase; complex catalyzes the oxidation of isocitrate to alpha-ketoglutarate in the TCA cycle; phosphorylated; GO_component: GO:0005962 - mitochondrial isocitrate dehydrogenase complex (NAD+) [Evidence IDA] [PMID 16884682]; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 11502169]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 11914276]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0051287 - NAD binding [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0004449 - isocitrate dehydrogenase (NAD+) activity [Evidence IEA,IEA]; GO_function: GO:0004449 - isocitrate dehydrogenase (NAD+) activity [Evidence IDA] [PMID 16884682]; GO_function: GO:0000287 - magnesium ion binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor [Evidence IEA]; GO_process: GO:0006537 - glutamate biosynthetic process [Evidence TAS] [PMID 9175438]; GO_process: GO:0006102 - isocitrate metabolic process [Evidence IDA] [PMID 16884682]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0006099 - tricarboxylic acid cycle [Evidence IEA,IEA]; GO_process: GO:0006099 - tricarboxylic acid cycle [Evidence TAS] [PMID 9175438]; isocitrate dehydrogenase (NAD(+)) IDH2 928073 IDH2 30034190 IDH2 Sugiyamaella lignohabitans isocitrate dehydrogenase (NAD(+)) IDH2 XP_018737167.1 927087 R 796027 CDS AWJ20_2296 30034191 927154..927447 B 1 NC_031674.1 uncharacterized protein 927447 30034191 AWJ20_2296 Sugiyamaella lignohabitans uncharacterized protein XP_018737168.1 927154 D 796027 CDS AWJ20_2297 30034192 complement(933933..936488) B 1 NC_031674.1 Inner nuclear membrane protein; highly enriched at telomeres and subtelomeric regions; functions in regulation of subtelomeric genes and is linked to TREX (transcription export) factors; SRC1 produces 2 splice variant proteins with different functions; alternative splicing of SRC1 pre-mRNA is promoted by Hub1p; mutant has aneuploidy tolerance; SEC1 has a paralog, HEH2, that arose from the whole genome duplication; GO_component: GO:0000781 - chromosome, telomeric region [Evidence IDA] [PMID 18762579]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0005639 - integral component of nuclear inner membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005635 - nuclear envelope [Evidence IDA] [PMID 16929305]; GO_component: GO:0005637 - nuclear inner membrane [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0043007 - maintenance of rDNA [Evidence IMP] [PMID 18997772]; GO_process: GO:0000070 - mitotic sister chromatid segregation [Evidence IGI] [PMID 11754482]; Src1p 936488 SRC1 30034192 SRC1 Sugiyamaella lignohabitans Src1p XP_018737169.1 933933 R 796027 CDS AWJ20_2298 30034193 937355..939925 B 1 NC_031674.1 AMP deaminase; tetrameric enzyme that catalyzes the deamination of AMP to form IMP and ammonia; thought to be involved in regulation of intracellular purine (adenine, guanine, and inosine) nucleotide pools; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0003876 - AMP deaminase activity [Evidence IEA,IEA]; GO_function: GO:0003876 - AMP deaminase activity [Evidence IDA,IMP] [PMID 2690949]; GO_function: GO:0019239 - deaminase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_process: GO:0006188 - IMP biosynthetic process [Evidence IEA]; GO_process: GO:0032264 - IMP salvage [Evidence IEA]; GO_process: GO:0006178 - guanine salvage [Evidence IGI,IMP] [PMID 19635936]; GO_process: GO:0009117 - nucleotide metabolic process [Evidence IEA]; GO_process: GO:0006163 - purine nucleotide metabolic process [Evidence IGI] [PMID 15869715]; GO_process: GO:0006163 - purine nucleotide metabolic process [Evidence IGI] [PMID 18433446]; GO_process: GO:0006163 - purine nucleotide metabolic process [Evidence IGI,IMP] [PMID 19635936]; GO_process: GO:0006163 - purine nucleotide metabolic process [Evidence IMP] [PMID 20087341]; GO_process: GO:0009168 - purine ribonucleoside monophosphate biosynthetic process [Evidence IEA]; AMP deaminase 939925 AMD1 30034193 AMD1 Sugiyamaella lignohabitans AMP deaminase XP_018737170.1 937355 D 796027 CDS AWJ20_2299 30034194 complement(940172..942076) B 1 NC_031674.1 Conserved NAPDH-dependent diflavin reductase; component of an early step in the cytosolic Fe-S protein assembly (CIA) machinery; transfers electrons from NADPH to the Fe-S cluster of Dre2p; plays a pro-death role under oxidative stress; Tah18p-dependent nitric oxide synthesis confers high-temperature stress tolerance; possible target for development of antifungal drugs; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 19194512]; GO_function: GO:0010181 - FMN binding [Evidence IEA,IEA]; GO_function: GO:0050661 - NADP binding [Evidence IEA]; GO_function: GO:0003958 - NADPH-hemoprotein reductase activity [Evidence IEA]; GO_function: GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO_function: GO:0005506 - iron ion binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0016651 - oxidoreductase activity, acting on NAD(P)H [Evidence IEA]; GO_function: GO:0016651 - oxidoreductase activity, acting on NAD(P)H [Evidence IDA] [PMID 20802492]; GO_process: GO:0016226 - iron-sulfur cluster assembly [Evidence IEA]; GO_process: GO:0016226 - iron-sulfur cluster assembly [Evidence IMP] [PMID 20802492]; GO_process: GO:0006809 - nitric oxide biosynthetic process [Evidence IMP] [PMID 23159617]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IDA] [PMID 20802492]; Tah18p 942076 TAH18 30034194 TAH18 Sugiyamaella lignohabitans Tah18p XP_018737171.1 940172 R 796027 CDS AWJ20_2300 30034197 944999..945778 B 1 NC_031674.1 N-terminus has a leader sequence with features reminiscent of mitochondrial import signals. Translated as a 28KDa precursor protein which is cleaved to a 21KDa mature form.; Mge1p 945778 MGE1 30034197 MGE1 Sugiyamaella lignohabitans Mge1p XP_018737172.1 944999 D 796027 CDS AWJ20_2301 30034198 complement(946050..947468) B 1 NC_031674.1 Mitochondrial phenylalanyl-tRNA synthetase; active as a monomer, unlike the cytoplasmic subunit which is active as a dimer complexed to a beta subunit dimer; similar to the alpha subunit of E. coli phenylalanyl-tRNA synthetase; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IMP] [PMID 3029120]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004812 - aminoacyl-tRNA ligase activity [Evidence IEA,IEA]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0000287 - magnesium ion binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_function: GO:0004826 - phenylalanine-tRNA ligase activity [Evidence IEA,IEA]; GO_function: GO:0004826 - phenylalanine-tRNA ligase activity [Evidence IDA] [PMID 16162501]; GO_function: GO:0004826 - phenylalanine-tRNA ligase activity [Evidence IDA] [PMID 1924298]; GO_function: GO:0004826 - phenylalanine-tRNA ligase activity [Evidence IMP,ISS] [PMID 3029120]; GO_function: GO:0000049 - tRNA binding [Evidence IEA]; GO_process: GO:0070156 - mitochondrial phenylalanyl-tRNA aminoacylation [Evidence IMP] [PMID 3029120]; GO_process: GO:0006432 - phenylalanyl-tRNA aminoacylation [Evidence IEA]; GO_process: GO:0006432 - phenylalanyl-tRNA aminoacylation [Evidence IDA] [PMID 1924298]; GO_process: GO:0043039 - tRNA aminoacylation [Evidence IEA]; GO_process: GO:0006418 - tRNA aminoacylation for protein translation [Evidence IEA]; GO_process: GO:0008033 - tRNA processing [Evidence IEA]; GO_process: GO:0006412 - translation [Evidence IEA]; phenylalanine--tRNA ligase 947468 MSF1 30034198 MSF1 Sugiyamaella lignohabitans phenylalanine--tRNA ligase XP_018737173.1 946050 R 796027 CDS AWJ20_2302 30034199 946438..946851 B 1 NC_031674.1 uncharacterized protein 946851 30034199 AWJ20_2302 Sugiyamaella lignohabitans uncharacterized protein XP_018737174.1 946438 D 796027 CDS AWJ20_2303 30034200 948033..948749 B 1 NC_031674.1 Mitochondrial ribosomal protein of the large subunit; homologous to bacterial L16 ribosomal protein; synthetically lethal with hac1 mutant suggesting a role in the maturation of secretory proteins; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0005762 - mitochondrial large ribosomal subunit [Evidence IDA] [PMID 7478995]; GO_component: GO:0005762 - mitochondrial large ribosomal subunit [Evidence IDA] [PMID 9151978]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA,IEA]; GO_function: GO:0019843 - rRNA binding [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IDA] [PMID 7478995]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IDA] [PMID 9151978]; GO_process: GO:0032543 - mitochondrial translation [Evidence IMP] [PMID 7478995]; GO_process: GO:0051604 - protein maturation [Evidence IMP] [PMID 19433630]; GO_process: GO:0006412 - translation [Evidence IEA]; mitochondrial 54S ribosomal protein YmL47 948749 MRPL16 30034200 MRPL16 Sugiyamaella lignohabitans mitochondrial 54S ribosomal protein YmL47 XP_018737175.1 948033 D 796027 CDS AWJ20_2304 30034201 complement(949020..950087) B 1 NC_031674.1 Subunit of heteropentameric Replication factor C (RF-C); RF-C is a DNA binding protein and ATPase that acts as a clamp loader of the proliferating cell nuclear antigen (PCNA) processivity factor for DNA polymerases delta and epsilon; GO_component: GO:0031390 - Ctf18 RFC-like complex [Evidence IPI] [PMID 11389843]; GO_component: GO:0005663 - DNA replication factor C complex [Evidence IDA] [PMID 7651383]; GO_component: GO:0005663 - DNA replication factor C complex [Evidence IMP] [PMID 8559655]; GO_component: GO:0031391 - Elg1 RFC-like complex [Evidence IPI] [PMID 12909721]; GO_component: GO:0031391 - Elg1 RFC-like complex [Evidence IPI] [PMID 12912927]; GO_component: GO:0031389 - Rad17 RFC-like complex [Evidence IDA] [PMID 12604797]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0003689 - DNA clamp loader activity [Evidence IDA] [PMID 12604797]; GO_function: GO:0003689 - DNA clamp loader activity [Evidence IDA] [PMID 8995429]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_process: GO:0006260 - DNA replication [Evidence IEA,IEA]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0006272 - leading strand elongation [Evidence IDA] [PMID 1346062]; GO_process: GO:0007062 - sister chromatid cohesion [Evidence IPI] [PMID 11389843]; GO_process: GO:0007062 - sister chromatid cohesion [Evidence IMP] [PMID 12665596]; replication factor C subunit 5 950087 RFC5 30034201 RFC5 Sugiyamaella lignohabitans replication factor C subunit 5 XP_018737176.1 949020 R 796027 CDS AWJ20_2305 30034202 complement(950442..950783) B 1 NC_031674.1 glucose-inactivated glycerol proton symporter STL1 950783 STL1 30034202 STL1 Sugiyamaella lignohabitans glucose-inactivated glycerol proton symporter STL1 XP_018737177.1 950442 R 796027 CDS AWJ20_2306 30034203 complement(951331..951828) B 1 NC_031674.1 glucose-inactivated glycerol proton symporter STL1 951828 STL1 30034203 STL1 Sugiyamaella lignohabitans glucose-inactivated glycerol proton symporter STL1 XP_018737178.1 951331 R 796027 CDS AWJ20_2307 30034204 complement(951898..952176) B 1 NC_031674.1 glucose-inactivated glycerol proton symporter STL1 952176 STL1 30034204 STL1 Sugiyamaella lignohabitans glucose-inactivated glycerol proton symporter STL1 XP_018737179.1 951898 R 796027 CDS AWJ20_2308 30034205 955858..956838 B 1 NC_031674.1 Peroxisomal 2,4-dienoyl-CoA reductase; auxiliary enzyme of fatty acid beta-oxidation; homodimeric enzyme required for growth and sporulation on petroselineate medium; expression induced during late sporulation and in the presence of oleate; GO_component: GO:0005782 - peroxisomal matrix [Evidence IDA] [PMID 9268358]; GO_component: GO:0005777 - peroxisome [Evidence IEA,IEA]; GO_function: GO:0008670 - 2,4-dienoyl-CoA reductase (NADPH) activity [Evidence IEA]; GO_function: GO:0008670 - 2,4-dienoyl-CoA reductase (NADPH) activity [Evidence IDA,ISS] [PMID 9268358]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_process: GO:0030437 - ascospore formation [Evidence IEP,IMP] [PMID 7969036]; GO_process: GO:0009062 - fatty acid catabolic process [Evidence IDA,ISS] [PMID 9268358]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; GO_process: GO:0030435 - sporulation resulting in formation of a cellular spore [Evidence IEA]; Sps19p 956838 SPS19 30034205 SPS19 Sugiyamaella lignohabitans Sps19p XP_018737180.1 955858 D 796027 CDS AWJ20_2309 30034206 complement(957086..957586) B 1 NC_031674.1 uncharacterized protein 957586 30034206 AWJ20_2309 Sugiyamaella lignohabitans uncharacterized protein XP_018737181.1 957086 R 796027 CDS AWJ20_2310 30034208 958231..959997 B 1 NC_031674.1 Dihydroxyacetone kinase; required for detoxification of dihydroxyacetone (DHA); involved in stress adaptation; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004371 - glycerone kinase activity [Evidence IEA,IEA]; GO_function: GO:0004371 - glycerone kinase activity [Evidence IDA] [PMID 12401799]; GO_function: GO:0004371 - glycerone kinase activity [Evidence ISS] [PMID 9038161]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0050354 - triokinase activity [Evidence IEA]; GO_process: GO:0019588 - anaerobic glycerol catabolic process [Evidence IEA]; GO_process: GO:0097237 - cellular response to toxic substance [Evidence IMP] [PMID 12401799]; GO_process: GO:0019563 - glycerol catabolic process [Evidence ISS] [PMID 9038161]; GO_process: GO:0006071 - glycerol metabolic process [Evidence IEA,IEA]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; Dak1p 959997 DAK1 30034208 DAK1 Sugiyamaella lignohabitans Dak1p XP_018737182.1 958231 D 796027 CDS AWJ20_2311 30034209 960344..961111 B 1 NC_031674.1 Triose phosphate isomerase, abundant glycolytic enzyme; mRNA half-life is regulated by iron availability; transcription is controlled by activators Reb1p, Gcr1p, and Rap1p through binding sites in the 5' non-coding region; inhibition of Tpi1p activity by PEP (phosphoenolpyruvate) stimulates redox metabolism in respiring cells; E104D mutation in human TPI causes a rare autosomal disease; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16962558]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 16622836]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016853 - isomerase activity [Evidence IEA]; GO_function: GO:0004807 - triose-phosphate isomerase activity [Evidence IEA,IEA]; GO_function: GO:0004807 - triose-phosphate isomerase activity [Evidence IDA] [PMID 236471]; GO_process: GO:0006094 - gluconeogenesis [Evidence IEA,IEA]; GO_process: GO:0006096 - glycolytic process [Evidence IEA,IEA,IEA]; GO_process: GO:0006096 - glycolytic process [Evidence IMP] [PMID 11329176]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0006098 - pentose-phosphate shunt [Evidence IEA]; triose-phosphate isomerase TPI1 961111 TPI1 30034209 TPI1 Sugiyamaella lignohabitans triose-phosphate isomerase TPI1 XP_018737183.1 960344 D 796027 CDS AWJ20_2312 30034210 complement(961621..963468) B 1 NC_031674.1 uncharacterized protein 963468 30034210 AWJ20_2312 Sugiyamaella lignohabitans uncharacterized protein XP_018737184.1 961621 R 796027 CDS AWJ20_2315 30034213 complement(965639..966403) B 1 NC_031674.1 Regulatory subunit of the type 1 protein phosphatase (PP1) Glc7p; whether it functions as a positive or negative regulator of Glc7p is controversial; involved in the regulation of Glc7p nuclear localization and function; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11801737]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11914276]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0000164 - protein phosphatase type 1 complex [Evidence IDA] [PMID 10775415]; GO_function: GO:0071862 - protein phosphatase type 1 activator activity [Evidence IGI] [PMID 11801737]; GO_function: GO:0071862 - protein phosphatase type 1 activator activity [Evidence IGI] [PMID 18172024]; GO_function: GO:0004865 - protein serine/threonine phosphatase inhibitor activity [Evidence IGI,IMP] [PMID 17142459]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0007059 - chromosome segregation [Evidence IMP] [PMID 11801737]; GO_process: GO:0051457 - maintenance of protein location in nucleus [Evidence IMP] [PMID 11801737]; GO_process: GO:0007067 - mitotic nuclear division [Evidence IEA]; Sds22p 966403 SDS22 30034213 SDS22 Sugiyamaella lignohabitans Sds22p XP_018737185.1 965639 R 796027 CDS AWJ20_2316 30034214 complement(969267..969593) B 1 NC_031674.1 Mitochondrial matrix acyl carrier protein; involved in biosynthesis of octanoate, which is a precursor to lipoic acid; activated by phosphopantetheinylation catalyzed by Ppt2p; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0070469 - respiratory chain [Evidence IEA]; GO_function: GO:0000036 - ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process [Evidence ISS] [PMID 8394042]; GO_process: GO:0006633 - fatty acid biosynthetic process [Evidence IEA,IEA,IEA]; GO_process: GO:0006631 - fatty acid metabolic process [Evidence IEA]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0009107 - lipoate biosynthetic process [Evidence IMP] [PMID 9187370]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; Acp1p 969593 ACP1 30034214 ACP1 Sugiyamaella lignohabitans Acp1p XP_018737186.1 969267 R 796027 CDS AWJ20_2317 30034215 complement(971377..973071) B 1 NC_031674.1 Myosin-Vb 973071 30034215 AWJ20_2317 Sugiyamaella lignohabitans Myosin-Vb XP_018737187.1 971377 R 796027 CDS AWJ20_2318 30034216 complement(973386..975245) B 1 NC_031674.1 uncharacterized protein 975245 30034216 AWJ20_2318 Sugiyamaella lignohabitans uncharacterized protein XP_018737188.1 973386 R 796027 CDS AWJ20_2319 30034217 complement(976463..978091) B 1 NC_031674.1 GTPase-activating protein SST2 978091 SST2 30034217 SST2 Sugiyamaella lignohabitans GTPase-activating protein SST2 XP_018737189.1 976463 R 796027 CDS AWJ20_2320 30034219 complement(978777..980540) B 1 NC_031674.1 putative mitogen-activated protein kinase kinase MKK2 980540 MKK2 30034219 MKK2 Sugiyamaella lignohabitans putative mitogen-activated protein kinase kinase MKK2 XP_018737190.1 978777 R 796027 CDS AWJ20_2321 30034220 984023..984829 B 1 NC_031674.1 Assembly chaperone for the 19S proteasome regulatory particle base; proteasome-interacting protein involved in the assembly of the base subcomplex of the 19S proteasomal regulatory particle (RP); ortholog of human oncoprotein gankyrin, which interacts with the Rb tumor suppressor and CDK4/6; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 19446323]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 19446323]; GO_component: GO:0005838 - proteasome regulatory particle [Evidence IDA] [PMID 11029046]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0070682 - proteasome regulatory particle assembly [Evidence IGI] [PMID 19412159]; GO_process: GO:0070682 - proteasome regulatory particle assembly [Evidence IGI,IMP] [PMID 19446322]; GO_process: GO:0070682 - proteasome regulatory particle assembly [Evidence IGI,IMP] [PMID 19446323]; GO_process: GO:0006508 - proteolysis [Evidence IPI,ISS] [PMID 11029046]; Nas6p 984829 NAS6 30034220 NAS6 Sugiyamaella lignohabitans Nas6p XP_018737191.1 984023 D 796027 CDS AWJ20_2322 30034221 complement(985327..985887) B 1 NC_031674.1 Ribosomal 60S subunit protein L18A; intron of RPL18A pre-mRNA forms stem-loop structures that are a target for Rnt1p cleavage leading to degradation; homologous to mammalian ribosomal protein L18, no bacterial homolog; RPL18A has a paralog, RPL18B, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0022625 - cytosolic large ribosomal subunit [Evidence IDA] [PMID 11983894]; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA,IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IC] [PMID 11983894]; GO_process: GO:0002181 - cytoplasmic translation [Evidence IC] [PMID 11983894]; GO_process: GO:0006412 - translation [Evidence IEA]; ribosomal 60S subunit protein L18A 985887 RPL18A 30034221 RPL18A Sugiyamaella lignohabitans ribosomal 60S subunit protein L18A XP_018737192.1 985327 R 796027 CDS AWJ20_2323 30034222 complement(988923..990764) B 1 NC_031674.1 Protein involved in the regulation of cell wall synthesis; proposed to be involved in coordinating cell cycle progression with cell wall integrity; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 10206705]; GO_component: GO:0000131 - incipient cellular bud site [Evidence IDA] [PMID 10206705]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 19053807]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0042546 - cell wall biogenesis [Evidence IEA]; GO_process: GO:0032995 - regulation of fungal-type cell wall biogenesis [Evidence IGI,IMP] [PMID 10206705]; GO_process: GO:0007346 - regulation of mitotic cell cycle [Evidence IGI] [PMID 11410349]; GO_process: GO:0007346 - regulation of mitotic cell cycle [Evidence IMP] [PMID 12823808]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Smi1p 990764 SMI1 30034222 SMI1 Sugiyamaella lignohabitans Smi1p XP_018737193.1 988923 R 796027 CDS AWJ20_2324 30034223 994160..994438 B 1 NC_031674.1 Protein component of the small (40S) ribosomal subunit; homologous to mammalian ribosomal protein S15 and bacterial S19; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0022627 - cytosolic small ribosomal subunit [Evidence NAS] [PMID 9559554]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA,IEA]; GO_component: GO:0015935 - small ribosomal subunit [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence NAS] [PMID 9559554]; GO_process: GO:0002181 - cytoplasmic translation [Evidence NAS] [PMID 9559554]; GO_process: GO:0006407 - rRNA export from nucleus [Evidence IMP] [PMID 15167894]; GO_process: GO:0006407 - rRNA export from nucleus [Evidence IMP] [PMID 16246728]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; GO_process: GO:0006412 - translation [Evidence IEA]; ribosomal 40S subunit protein S15 994438 RPS15 30034223 RPS15 Sugiyamaella lignohabitans ribosomal 40S subunit protein S15 XP_018737194.1 994160 D 796027 CDS AWJ20_2325 30034224 complement(994715..996325) B 1 NC_031674.1 hypothetical protein; mtc6 is synthetically sick with cdc13-1; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; Mtc6p 996325 MTC6 30034224 MTC6 Sugiyamaella lignohabitans Mtc6p XP_018737195.1 994715 R 796027 CDS AWJ20_2326 30034225 999246..1000166 B 1 NC_031674.1 Subunit of the prohibitin complex (Phb1p-Phb2p); prohibitin is a 1.2 MDa ring-shaped inner mitochondrial membrane chaperone that stabilizes newly synthesized proteins; determinant of replicative life span; involved in mitochondrial segregation; prohibitin deficiency induces a mitochondrial unfolded protein response (mtUPR); GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IDA] [PMID 10835343]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IDA] [PMID 9632789]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 9259555]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0000001 - mitochondrion inheritance [Evidence IMP] [PMID 12882345]; GO_process: GO:0045861 - negative regulation of proteolysis [Evidence IMP,IPI] [PMID 10207067]; GO_process: GO:0006457 - protein folding [Evidence IDA,IPI,ISS] [PMID 10835343]; GO_process: GO:0001302 - replicative cell aging [Evidence IMP] [PMID 12882345]; GO_process: GO:0001302 - replicative cell aging [Evidence IMP] [PMID 9259555]; prohibitin subunit PHB2 1000166 PHB2 30034225 PHB2 Sugiyamaella lignohabitans prohibitin subunit PHB2 XP_018737196.1 999246 D 796027 CDS AWJ20_2327 30034226 complement(1003176..1004927) B 1 NC_031674.1 Alanine transaminase (glutamic pyruvic transaminase); involved in alanine biosynthesis and catabolism; TOR1-independent role in determining chronological lifespan; expression is induced in the presence of alanine; repression is mediated by Nrg1p; ALT1 has a paralog, ALT2, that arose from the whole genome duplication; Alt2p is catalytically inactive; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 11502169]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0004021 - L-alanine:2-oxoglutarate aminotransferase activity [Evidence IEA]; GO_function: GO:0004021 - L-alanine:2-oxoglutarate aminotransferase activity [Evidence IMP] [PMID 19396236]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0030170 - pyridoxal phosphate binding [Evidence IEA]; GO_function: GO:0008483 - transaminase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0042853 - L-alanine catabolic process [Evidence IEA]; GO_process: GO:0006523 - alanine biosynthetic process [Evidence IMP] [PMID 19396236]; GO_process: GO:0006524 - alanine catabolic process [Evidence IMP] [PMID 19396236]; GO_process: GO:0009058 - biosynthetic process [Evidence IEA]; GO_process: GO:0001300 - chronological cell aging [Evidence IMP] [PMID 23527786]; alanine transaminase ALT1 1004927 ALT1 30034226 ALT1 Sugiyamaella lignohabitans alanine transaminase ALT1 XP_018737197.1 1003176 R 796027 CDS AWJ20_2328 30034227 1007175..1008038 B 1 NC_031674.1 Hsp70 (Ssa1p) nucleotide exchange factor; required for the release of misfolded proteins from the Hsp70 system to the Ub-proteasome machinery for destruction; cytosolic homolog of Sil1p, which is the nucleotide exchange factor for BiP (Kar2p) in the endoplasmic reticulum; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 12052876]; GO_component: GO:0022626 - cytosolic ribosome [Evidence IPI] [PMID 12052876]; GO_function: GO:0000774 - adenyl-nucleotide exchange factor activity [Evidence IDA,IPI] [PMID 12052876]; GO_process: GO:0071629 - cytoplasm-associated proteasomal ubiquitin-dependent protein catabolic process [Evidence IDA,IMP] [PMID 23530227]; GO_process: GO:0002181 - cytoplasmic translation [Evidence IMP] [PMID 12052876]; GO_process: GO:0006417 - regulation of translation [Evidence IEA]; Fes1p 1008038 FES1 30034227 FES1 Sugiyamaella lignohabitans Fes1p XP_018737198.1 1007175 D 796027 CDS AWJ20_2329 30034228 1008387..1009376 B 1 NC_031674.1 uncharacterized protein 1009376 30034228 AWJ20_2329 Sugiyamaella lignohabitans uncharacterized protein XP_018737199.1 1008387 D 796027 CDS AWJ20_2330 30034230 1011870..1012748 B 1 NC_031674.1 NADPH-dependent alpha-keto amide reductase; reduces aromatic alpha-keto amides, aliphatic alpha-keto esters, and aromatic alpha-keto esters; member of the aldo-keto reductase (AKR) family; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 16622836]; GO_function: GO:0004032 - alditol:NADP+ 1-oxidoreductase activity [Evidence IDA,ISS] [PMID 11306085]; GO_function: GO:0004033 - aldo-keto reductase (NADP) activity [Evidence IDA] [PMID 17140678]; GO_function: GO:0051268 - alpha-keto amide reductase activity [Evidence IDA] [PMID 15564669]; GO_function: GO:0051269 - alpha-keto ester reductase activity [Evidence IDA] [PMID 15564669]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_process: GO:0043603 - cellular amide metabolic process [Evidence IDA] [PMID 15564669]; GO_process: GO:0006725 - cellular aromatic compound metabolic process [Evidence IDA] [PMID 16268655]; GO_process: GO:0042180 - cellular ketone metabolic process [Evidence IDA] [PMID 17140678]; GO_process: GO:0034599 - cellular response to oxidative stress [Evidence IGI] [PMID 17919749]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; aldo-keto reductase superfamily protein 1012748 30034230 AWJ20_2330 Sugiyamaella lignohabitans aldo-keto reductase superfamily protein XP_018737200.1 1011870 D 796027 CDS AWJ20_2331 30034231 complement(1012839..1014503) B 1 NC_031674.1 Allantoin permease; expression sensitive to nitrogen catabolite repression and induced by allophanate, an intermediate in allantoin degradation; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA,IEA]; GO_component: GO:0016020 - membrane [Evidence ISS] [PMID 1293888]; GO_function: GO:0005274 - allantoin uptake transmembrane transporter activity [Evidence ISS] [PMID 1293888]; GO_function: GO:0005274 - allantoin uptake transmembrane transporter activity [Evidence IMP] [PMID 385448]; GO_function: GO:0015205 - nucleobase transmembrane transporter activity [Evidence IEA]; GO_function: GO:0005215 - transporter activity [Evidence IEA]; GO_process: GO:0000256 - allantoin catabolic process [Evidence IMP] [PMID 385448]; GO_process: GO:0015720 - allantoin transport [Evidence IMP] [PMID 3549700]; GO_process: GO:0015720 - allantoin transport [Evidence IMP] [PMID 385448]; GO_process: GO:0015851 - nucleobase transport [Evidence IEA]; GO_process: GO:0006144 - purine nucleobase metabolic process [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; Dal4p 1014503 DAL4 30034231 DAL4 Sugiyamaella lignohabitans Dal4p XP_018737201.1 1012839 R 796027 CDS AWJ20_2332 30034232 1014919..1017123 B 1 NC_031674.1 Positive regulator of genes in multiple nitrogen degradation pathways; contains DNA binding domain but does not appear to bind the dodecanucleotide sequence present in the promoter region of many genes involved in allantoin catabolism; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IC] [PMID 20581295]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0001128 - RNA polymerase II transcription coactivator activity involved in preinitiation complex assembly [Evidence IDA,IMP] [PMID 21515579]; GO_function: GO:0001190 - RNA polymerase II transcription factor binding transcription factor activity involved in positive regulation of transcription [Evidence IPI] [PMID 10906145]; GO_function: GO:0001190 - RNA polymerase II transcription factor binding transcription factor activity involved in positive regulation of transcription [Evidence IMP] [PMID 17603098]; GO_function: GO:0001135 - RNA polymerase II transcription factor recruiting transcription factor activity [Evidence IDA,IMP] [PMID 21515579]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0000981 - sequence-specific DNA binding RNA polymerase II transcription factor activity [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0001080 - nitrogen catabolite activation of transcription from RNA polymerase II promoter [Evidence IPI] [PMID 10906145]; GO_process: GO:0001080 - nitrogen catabolite activation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 7899074]; GO_process: GO:1901717 - positive regulation of gamma-aminobutyric acid catabolic process [Evidence IMP] [PMID 2406136]; GO_process: GO:1901714 - positive regulation of urea catabolic process [Evidence IMP] [PMID 2406136]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA,IEA]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA,IEA]; Dal81p 1017123 DAL81 30034232 DAL81 Sugiyamaella lignohabitans Dal81p XP_018737202.1 1014919 D 796027 CDS AWJ20_2333 30034233 complement(1017146..1019029) B 1 NC_031674.1 uncharacterized protein 1019029 30034233 AWJ20_2333 Sugiyamaella lignohabitans uncharacterized protein XP_018737203.1 1017146 R 796027 CDS AWJ20_2334 30034234 1019388..1020035 B 1 NC_031674.1 Putative amidase; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0004040 - amidase activity [Evidence IEA]; GO_function: GO:0004040 - amidase activity [Evidence ISS] [PMID 2263500]; GO_function: GO:0016884 - carbon-nitrogen ligase activity, with glutamine as amido-N-donor [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016811 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides [Evidence IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0008152 - metabolic process [Evidence IEA,IEA,IEA]; Amd2p 1020035 AMD2 30034234 AMD2 Sugiyamaella lignohabitans Amd2p XP_018737204.1 1019388 D 796027 CDS AWJ20_2335 30034235 1020105..1020995 B 1 NC_031674.1 Putative amidase; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0004040 - amidase activity [Evidence IEA]; GO_function: GO:0004040 - amidase activity [Evidence ISS] [PMID 2263500]; GO_function: GO:0016884 - carbon-nitrogen ligase activity, with glutamine as amido-N-donor [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016811 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides [Evidence IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0008152 - metabolic process [Evidence IEA,IEA,IEA]; Amd2p 1020995 AMD2 30034235 AMD2 Sugiyamaella lignohabitans Amd2p XP_018737205.1 1020105 D 796027 CDS AWJ20_2336 30034236 1021833..1023350 B 1 NC_031674.1 protein kinase PKP2 1023350 PKP2 30034236 PKP2 Sugiyamaella lignohabitans protein kinase PKP2 XP_018737206.1 1021833 D 796027 CDS AWJ20_2337 30034237 complement(1023560..1024861) B 1 NC_031674.1 Cys-Gly metallo-di-peptidase; forms a complex with Dug2p and Dug3p to degrade glutathione (GSH) and other peptides containing a gamma-glu-X bond in an alternative pathway to GSH degradation by gamma-glutamyl transpeptidase (Ecm38p); GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 17179087]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005840 - ribosome [Evidence IDA] [PMID 16702403]; GO_function: GO:0016805 - dipeptidase activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA,IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0070573 - metallodipeptidase activity [Evidence IDA,IMP] [PMID 19346245]; GO_function: GO:0008237 - metallopeptidase activity [Evidence IEA]; GO_function: GO:0008242 - omega peptidase activity [Evidence IGI] [PMID 17179087]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_function: GO:0034701 - tripeptidase activity [Evidence IEA]; GO_process: GO:0006751 - glutathione catabolic process [Evidence IMP] [PMID 17179087]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0006508 - proteolysis [Evidence IEA]; metallodipeptidase 1024861 DUG1 30034237 DUG1 Sugiyamaella lignohabitans metallodipeptidase XP_018737207.1 1023560 R 796027 CDS AWJ20_2338 30034238 join(1027100..1027320,1027700..1029173) B 1 NC_031674.1 mRNA cap binding protein and translation initiation factor eIF4E; the eIF4E-cap complex is responsible for mediating cap-dependent mRNA translation via interactions with translation initiation factor eIF4G (Tif4631p or Tif4632p); protein abundance increases in response to DNA replication stress; mutants are defective for adhesion and pseudohyphal growth; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 8119957]; GO_component: GO:0010494 - cytoplasmic stress granule [Evidence IDA] [PMID 17908917]; GO_component: GO:0010494 - cytoplasmic stress granule [Evidence IDA] [PMID 18981231]; GO_component: GO:0016281 - eukaryotic translation initiation factor 4F complex [Evidence TAS] [PMID 9841679]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 8119957]; GO_component: GO:0005840 - ribosome [Evidence TAS] [PMID 9841679]; GO_function: GO:0003723 - RNA binding [Evidence IEA,IEA]; GO_function: GO:0032266 - phosphatidylinositol-3-phosphate binding [Evidence IDA] [PMID 16343487]; GO_function: GO:0003743 - translation initiation factor activity [Evidence IEA,IEA]; GO_function: GO:0003743 - translation initiation factor activity [Evidence ISS] [PMID 3062383]; GO_process: GO:0000184 - nuclear-transcribed mRNA catabolic process, nonsense-mediated decay [Evidence IDA,IPI] [PMID 15753296]; GO_process: GO:0051726 - regulation of cell cycle [Evidence IMP] [PMID 2540596]; GO_process: GO:0006417 - regulation of translation [Evidence IEA]; GO_process: GO:0006412 - translation [Evidence IEA]; GO_process: GO:0006413 - translational initiation [Evidence IEA,IEA]; GO_process: GO:0006413 - translational initiation [Evidence ISS] [PMID 3062383]; translation initiation factor eIF4E 1029173 CDC33 30034238 CDC33 Sugiyamaella lignohabitans translation initiation factor eIF4E XP_018737208.1 1027100 D 796027 CDS AWJ20_2339 30034239 1030694..1033006 B 1 NC_031674.1 DNA binding transcriptional activator; mediates serine/threonine activation of the catabolic L-serine (L-threonine) deaminase (CHA1); Zinc-finger protein with Zn[2]-Cys[6] fungal-type binuclear cluster domain; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IPI] [PMID 8889513]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19111667]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19158363]; GO_function: GO:0000981 - sequence-specific DNA binding RNA polymerase II transcription factor activity [Evidence IEA]; GO_function: GO:0003700 - sequence-specific DNA binding transcription factor activity [Evidence IDA,IPI,ISS] [PMID 8889513]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0009063 - cellular amino acid catabolic process [Evidence IGI,IMP] [PMID 8889513]; GO_process: GO:0045893 - positive regulation of transcription, DNA-templated [Evidence IMP] [PMID 8889513]; GO_process: GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence IEA]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA,IEA]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA,IEA]; Cha4p 1033006 CHA4 30034239 CHA4 Sugiyamaella lignohabitans Cha4p XP_018737209.1 1030694 D 796027 CDS AWJ20_2340 30034241 complement(1033238..1034554) B 1 NC_031674.1 membrane transporter (predicted) 1034554 mug73 30034241 mug73 Sugiyamaella lignohabitans membrane transporter (predicted) XP_018737210.1 1033238 R 796027 CDS AWJ20_2341 30034242 1038142..1039449 B 1 NC_031674.1 uncharacterized protein 1039449 30034242 AWJ20_2341 Sugiyamaella lignohabitans uncharacterized protein XP_018737211.1 1038142 D 796027 CDS AWJ20_2342 30034243 join(1039843..1040049,1040199..1045820) B 1 NC_031674.1 Phosphatidylinositol-4-kinase; functions in the Pkc1p protein kinase pathway; required for normal vacuole morphology, cell wall integrity, and actin cytoskeleton organization; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 12015967]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 19075114]; GO_function: GO:0004430 - 1-phosphatidylinositol 4-kinase activity [Evidence IEA]; GO_function: GO:0004430 - 1-phosphatidylinositol 4-kinase activity [Evidence IMP] [PMID 8288577]; GO_function: GO:0004430 - 1-phosphatidylinositol 4-kinase activity [Evidence IDA] [PMID 9346907]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016773 - phosphotransferase activity, alcohol group as acceptor [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016772 - transferase activity, transferring phosphorus-containing groups [Evidence IEA]; GO_process: GO:0046854 - phosphatidylinositol phosphorylation [Evidence IEA]; GO_process: GO:0046854 - phosphatidylinositol phosphorylation [Evidence IGI] [PMID 10930462]; GO_process: GO:0046854 - phosphatidylinositol phosphorylation [Evidence IDA] [PMID 9346907]; GO_process: GO:0048015 - phosphatidylinositol-mediated signaling [Evidence IEA]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; 1-phosphatidylinositol 4-kinase STT4 1045820 STT4 30034243 STT4 Sugiyamaella lignohabitans 1-phosphatidylinositol 4-kinase STT4 XP_018737212.1 1039843 D 796027 CDS AWJ20_2343 30034244 complement(1046114..1047631) B 1 NC_031674.1 DNA-binding transcription factor SWI5 1047631 SWI5 30034244 SWI5 Sugiyamaella lignohabitans DNA-binding transcription factor SWI5 XP_018737213.1 1046114 R 796027 CDS AWJ20_2344 30034245 complement(1049244..1049918) B 1 NC_031674.1 uncharacterized protein 1049918 30034245 AWJ20_2344 Sugiyamaella lignohabitans uncharacterized protein XP_018737214.1 1049244 R 796027 CDS AWJ20_2345 30034246 1051479..1052642 B 1 NC_031674.1 Dihydrolipoyl transsuccinylase; component of the mitochondrial alpha-ketoglutarate dehydrogenase complex, which catalyzes the oxidative decarboxylation of alpha-ketoglutarate to succinyl-CoA in the TCA cycle; phosphorylated; GO_component: GO:0042645 - mitochondrial nucleoid [Evidence IDA] [PMID 10869431]; GO_component: GO:0042645 - mitochondrial nucleoid [Evidence IDA] [PMID 11926067]; GO_component: GO:0009353 - mitochondrial oxoglutarate dehydrogenase complex [Evidence IDA] [PMID 2072900]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0045252 - oxoglutarate dehydrogenase complex [Evidence IEA]; GO_function: GO:0004149 - dihydrolipoyllysine-residue succinyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0004149 - dihydrolipoyllysine-residue succinyltransferase activity [Evidence ISA] [PMID 2115121]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016746 - transferase activity, transferring acyl groups [Evidence IEA,IEA]; GO_process: GO:0006103 - 2-oxoglutarate metabolic process [Evidence IMP] [PMID 2115121]; GO_process: GO:0033512 - L-lysine catabolic process to acetyl-CoA via saccharopine [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0000002 - mitochondrial genome maintenance [Evidence IGI] [PMID 10869431]; GO_process: GO:0006099 - tricarboxylic acid cycle [Evidence IEA,IEA]; GO_process: GO:0006099 - tricarboxylic acid cycle [Evidence IC] [PMID 2072900]; alpha-ketoglutarate dehydrogenase KGD2 1052642 KGD2 30034246 KGD2 Sugiyamaella lignohabitans alpha-ketoglutarate dehydrogenase KGD2 XP_018737215.1 1051479 D 796027 CDS AWJ20_2346 30034247 complement(1052956..1054485) B 1 NC_031674.1 Choline kinase; catalyzes the first step in phosphatidylcholine synthesis via the CDP-choline (Kennedy pathway); exhibits some ethanolamine kinase activity contributing to phosphatidylethanolamine synthesis via the CDP-ethanolamine pathway; CKI1 has a paralog, EKI1, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0004103 - choline kinase activity [Evidence IEA]; GO_function: GO:0004103 - choline kinase activity [Evidence IGI,IMP] [PMID 10329685]; GO_function: GO:0004103 - choline kinase activity [Evidence IDA] [PMID 2536698]; GO_function: GO:0004305 - ethanolamine kinase activity [Evidence IGI,IMP] [PMID 10329685]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016773 - phosphotransferase activity, alcohol group as acceptor [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016772 - transferase activity, transferring phosphorus-containing groups [Evidence IEA]; GO_process: GO:0006657 - CDP-choline pathway [Evidence IEA]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0006656 - phosphatidylcholine biosynthetic process [Evidence IEA]; GO_process: GO:0006656 - phosphatidylcholine biosynthetic process [Evidence IGI,IMP] [PMID 10329685]; GO_process: GO:0006646 - phosphatidylethanolamine biosynthetic process [Evidence IGI,IMP] [PMID 10329685]; GO_process: GO:0008654 - phospholipid biosynthetic process [Evidence IEA]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; bifunctional choline kinase/ethanolamine kinase CKI1 1054485 CKI1 30034247 CKI1 Sugiyamaella lignohabitans bifunctional choline kinase/ethanolamine kinase CKI1 XP_018737216.1 1052956 R 796027 CDS AWJ20_2347 30034248 1061364..1062749 B 1 NC_031674.1 Putative RNA-binding protein; required for the expression of early and middle sporulation genes; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IMP,ISS] [PMID 10806425]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0007126 - meiotic nuclear division [Evidence IEA]; GO_process: GO:0007126 - meiotic nuclear division [Evidence IEP] [PMID 10806425]; GO_process: GO:0007126 - meiotic nuclear division [Evidence IMP] [PMID 11713679]; GO_process: GO:0006279 - premeiotic DNA replication [Evidence IMP] [PMID 11713679]; GO_process: GO:0007131 - reciprocal meiotic recombination [Evidence IMP] [PMID 11713679]; GO_process: GO:0030435 - sporulation resulting in formation of a cellular spore [Evidence IEA]; GO_process: GO:0030435 - sporulation resulting in formation of a cellular spore [Evidence IGI,IMP] [PMID 10806425]; Rim4p 1062749 RIM4 30034248 RIM4 Sugiyamaella lignohabitans Rim4p XP_018737217.1 1061364 D 796027 CDS AWJ20_2348 30034249 1064279..1065214 B 1 NC_031674.1 Autophagy-related protein and dual specificity member of the E1 family; mediates the conjugation of Atg12p with Atg5p and Atg8p with phosphatidylethanolamine which are required steps in autophagosome formation; E1 enzymes are also known as ubiquitin-activating enzymes; involved in methionine restriction extension of chronological lifespan in an autophagy-dependent manner; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 10233150]; GO_component: GO:0016020 - membrane [Evidence IDA] [PMID 10233148]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0000407 - pre-autophagosomal structure [Evidence IEA]; GO_component: GO:0000407 - pre-autophagosomal structure [Evidence IDA] [PMID 18497569]; GO_function: GO:0019778 - Atg12 activating enzyme activity [Evidence IMP] [PMID 10233150]; GO_function: GO:0019779 - Atg8 activating enzyme [Evidence IMP] [PMID 11100732]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_process: GO:0006501 - C-terminal protein lipidation [Evidence IMP] [PMID 11038174]; GO_process: GO:0006501 - C-terminal protein lipidation [Evidence IMP] [PMID 11100732]; GO_process: GO:0006501 - C-terminal protein lipidation [Evidence IMP] [PMID 12965207]; GO_process: GO:0006501 - C-terminal protein lipidation [Evidence IDA,IMP] [PMID 15277523]; GO_process: GO:0032258 - CVT pathway [Evidence IMP] [PMID 10233150]; GO_process: GO:0032258 - CVT pathway [Evidence IMP] [PMID 12965207]; GO_process: GO:0006914 - autophagy [Evidence IEA,IEA]; GO_process: GO:0006914 - autophagy [Evidence IMP] [PMID 23382696]; GO_process: GO:0044805 - late nucleophagy [Evidence IMP] [PMID 22768199]; GO_process: GO:0016236 - macroautophagy [Evidence IMP] [PMID 10233150]; GO_process: GO:0016236 - macroautophagy [Evidence IMP] [PMID 12965207]; GO_process: GO:0000422 - mitochondrion degradation [Evidence IMP] [PMID 19793921]; GO_process: GO:0034727 - piecemeal microautophagy of nucleus [Evidence IMP] [PMID 18701704]; GO_process: GO:0032446 - protein modification by small protein conjugation [Evidence IMP] [PMID 10233150]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Atg7p 1065214 ATG7 30034249 ATG7 Sugiyamaella lignohabitans Atg7p XP_018737218.1 1064279 D 796027 CDS AWJ20_2349 30034250 1065299..1065733 B 1 NC_031674.1 Autophagy-related protein and dual specificity member of the E1 family; mediates the conjugation of Atg12p with Atg5p and Atg8p with phosphatidylethanolamine which are required steps in autophagosome formation; E1 enzymes are also known as ubiquitin-activating enzymes; involved in methionine restriction extension of chronological lifespan in an autophagy-dependent manner; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 10233150]; GO_component: GO:0016020 - membrane [Evidence IDA] [PMID 10233148]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0000407 - pre-autophagosomal structure [Evidence IEA]; GO_component: GO:0000407 - pre-autophagosomal structure [Evidence IDA] [PMID 18497569]; GO_function: GO:0019778 - Atg12 activating enzyme activity [Evidence IMP] [PMID 10233150]; GO_function: GO:0019779 - Atg8 activating enzyme [Evidence IMP] [PMID 11100732]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_process: GO:0006501 - C-terminal protein lipidation [Evidence IMP] [PMID 11038174]; GO_process: GO:0006501 - C-terminal protein lipidation [Evidence IMP] [PMID 11100732]; GO_process: GO:0006501 - C-terminal protein lipidation [Evidence IMP] [PMID 12965207]; GO_process: GO:0006501 - C-terminal protein lipidation [Evidence IDA,IMP] [PMID 15277523]; GO_process: GO:0032258 - CVT pathway [Evidence IMP] [PMID 10233150]; GO_process: GO:0032258 - CVT pathway [Evidence IMP] [PMID 12965207]; GO_process: GO:0006914 - autophagy [Evidence IEA,IEA]; GO_process: GO:0006914 - autophagy [Evidence IMP] [PMID 23382696]; GO_process: GO:0044805 - late nucleophagy [Evidence IMP] [PMID 22768199]; GO_process: GO:0016236 - macroautophagy [Evidence IMP] [PMID 10233150]; GO_process: GO:0016236 - macroautophagy [Evidence IMP] [PMID 12965207]; GO_process: GO:0000422 - mitochondrion degradation [Evidence IMP] [PMID 19793921]; GO_process: GO:0034727 - piecemeal microautophagy of nucleus [Evidence IMP] [PMID 18701704]; GO_process: GO:0032446 - protein modification by small protein conjugation [Evidence IMP] [PMID 10233150]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Atg7p 1065733 ATG7 30034250 ATG7 Sugiyamaella lignohabitans Atg7p XP_018737219.1 1065299 D 796027 CDS AWJ20_2350 30034252 1066730..1068301 B 1 NC_031674.1 Signal recognition particle (SRP) subunit (homolog of mammalian SRP54); contains the signal sequence-binding activity of SRP, interacts with the SRP RNA, and mediates binding of SRP to signal receptor; contains GTPase domain; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0048500 - signal recognition particle [Evidence IEA]; GO_component: GO:0005786 - signal recognition particle, endoplasmic reticulum targeting [Evidence IEA]; GO_component: GO:0005786 - signal recognition particle, endoplasmic reticulum targeting [Evidence IDA] [PMID 7925282]; GO_function: GO:0008312 - 7S RNA binding [Evidence IEA]; GO_function: GO:0008312 - 7S RNA binding [Evidence IDA] [PMID 14681587]; GO_function: GO:0005525 - GTP binding [Evidence IEA,IEA]; GO_function: GO:0005525 - GTP binding [Evidence ISA] [PMID 2187859]; GO_function: GO:0005096 - GTPase activator activity [Evidence IEA]; GO_function: GO:0003924 - GTPase activity [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_function: GO:0005048 - signal sequence binding [Evidence IPI] [PMID 7925282]; GO_process: GO:0006184 - GTP catabolic process [Evidence IEA]; GO_process: GO:0006614 - SRP-dependent cotranslational protein targeting to membrane [Evidence IEA]; GO_process: GO:0006614 - SRP-dependent cotranslational protein targeting to membrane [Evidence IMP] [PMID 1655273]; GO_process: GO:0006617 - SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition [Evidence ISA] [PMID 2187859]; GO_process: GO:0006617 - SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition [Evidence IC] [PMID 7925282]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0043547 - positive regulation of GTPase activity [Evidence IEA]; GO_process: GO:0045047 - protein targeting to ER [Evidence IPI] [PMID 7925282]; Srp54p 1068301 SRP54 30034252 SRP54 Sugiyamaella lignohabitans Srp54p XP_018737220.1 1066730 D 796027 CDS AWJ20_2351 30034253 1068712..1070259 B 1 NC_031674.1 Threonine synthase; conserved protein that catalyzes formation of threonine from O-phosphohomoserine; expression is regulated by the GCN4-mediated general amino acid control pathway; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 24390141]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0016829 - lyase activity [Evidence IEA]; GO_function: GO:0030170 - pyridoxal phosphate binding [Evidence IEA]; GO_function: GO:0004795 - threonine synthase activity [Evidence IEA]; GO_function: GO:0004795 - threonine synthase activity [Evidence IMP] [PMID 8082795]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0006520 - cellular amino acid metabolic process [Evidence IEA]; GO_process: GO:0009088 - threonine biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0009088 - threonine biosynthetic process [Evidence IMP] [PMID 8082795]; threonine synthase THR4 1070259 THR4 30034253 THR4 Sugiyamaella lignohabitans threonine synthase THR4 XP_018737221.1 1068712 D 796027 CDS AWJ20_2352 30034254 complement(1070528..1072486) B 1 NC_031674.1 Putative endoribonuclease; subunit of the mRNA cleavage and polyadenylation specificity complex; required for 3' processing, splicing, and transcriptional termination of mRNAs and snoRNAs; protein abundance increases in response to DNA replication stress; YSH1 has a paralog, SYC1, that arose from the whole genome duplication; GO_component: GO:0005847 - mRNA cleavage and polyadenylation specificity factor complex [Evidence IPI] [PMID 10523662]; GO_component: GO:0005847 - mRNA cleavage and polyadenylation specificity factor complex [Evidence IDA] [PMID 12819204]; GO_component: GO:0005847 - mRNA cleavage and polyadenylation specificity factor complex [Evidence IPI] [PMID 9099738]; GO_component: GO:0005849 - mRNA cleavage factor complex [Evidence IPI] [PMID 9099738]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0003723 - RNA binding [Evidence IC] [PMID 9099738]; GO_function: GO:0004519 - endonuclease activity [Evidence IEA]; GO_function: GO:0004521 - endoribonuclease activity [Evidence IMP,ISS] [PMID 15037765]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA,IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004518 - nuclease activity [Evidence IEA]; GO_process: GO:0008380 - RNA splicing [Evidence IMP] [PMID 18971324]; GO_process: GO:0006379 - mRNA cleavage [Evidence IMP] [PMID 18971324]; GO_process: GO:0006378 - mRNA polyadenylation [Evidence IMP] [PMID 18971324]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0031126 - snoRNA 3'-end processing [Evidence IMP] [PMID 18971324]; GO_process: GO:0034247 - snoRNA splicing [Evidence IMP] [PMID 18971324]; GO_process: GO:0006369 - termination of RNA polymerase II transcription [Evidence IMP] [PMID 18971324]; Ysh1p 1072486 YSH1 30034254 YSH1 Sugiyamaella lignohabitans Ysh1p XP_018737222.1 1070528 R 796027 CDS AWJ20_2353 30034255 join(1073286..1073359,1073469..1074342) B 1 NC_031674.1 recombination protein Irc6 (predicted) 1074342 30034255 AWJ20_2353 Sugiyamaella lignohabitans recombination protein Irc6 (predicted) XP_018737223.1 1073286 D 796027 CDS AWJ20_2354 30034256 1076238..1077074 B 1 NC_031674.1 Type I membrane protein with a J domain; required to preserve the folding capacity of the endoplasmic reticulum; loss of the non-essential ERJ5 gene leads to a constitutively induced unfolded protein response; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 14562095]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 17157937]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006457 - protein folding [Evidence IMP] [PMID 17157937]; Erj5p 1077074 ERJ5 30034256 ERJ5 Sugiyamaella lignohabitans Erj5p XP_018737224.1 1076238 D 796027 CDS AWJ20_2355 30034257 complement(1080036..1081994) B 1 NC_031674.1 Protein that forms a complex with the Sit4p protein phosphatase; required for Sit4p function; member of a family of similar proteins including Sap4p, Sap155p, and Sap185p; SAP190 has a paralog, SAP185, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IPI] [PMID 8649382]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0000082 - G1/S transition of mitotic cell cycle [Evidence IGI,IMP,IPI] [PMID 8649382]; GO_process: GO:0031929 - TOR signaling [Evidence IMP] [PMID 15367655]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0016311 - dephosphorylation [Evidence IMP] [PMID 15367655]; GO_process: GO:0002098 - tRNA wobble uridine modification [Evidence IGI] [PMID 18755837]; Sap190p 1081994 SAP190 30034257 SAP190 Sugiyamaella lignohabitans Sap190p XP_018737225.1 1080036 R 796027 CDS AWJ20_2356 30034258 complement(1082214..1083530) B 1 NC_031674.1 Protein that forms a complex with the Sit4p protein phosphatase; required for Sit4p function; member of a family of similar proteins including Sap4p, Sap155p, and Sap185p; SAP190 has a paralog, SAP185, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IPI] [PMID 8649382]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0000082 - G1/S transition of mitotic cell cycle [Evidence IGI,IMP,IPI] [PMID 8649382]; GO_process: GO:0031929 - TOR signaling [Evidence IMP] [PMID 15367655]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0016311 - dephosphorylation [Evidence IMP] [PMID 15367655]; GO_process: GO:0002098 - tRNA wobble uridine modification [Evidence IGI] [PMID 18755837]; Sap190p 1083530 SAP190 30034258 SAP190 Sugiyamaella lignohabitans Sap190p XP_018737226.1 1082214 R 796027 CDS AWJ20_2357 30034259 join(1086639..1086772,1086965..1089113) B 1 NC_031674.1 uncharacterized protein 1089113 30034259 AWJ20_2357 Sugiyamaella lignohabitans uncharacterized protein XP_018737227.1 1086639 D 796027 CDS AWJ20_2358 30034260 1090623..1091834 B 1 NC_031674.1 Ferric reductase and cupric reductase; reduces siderophore-bound iron and oxidized copper prior to uptake by transporters; expression induced by low iron levels but not by low copper levels; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 8164662]; GO_function: GO:0052851 - ferric-chelate reductase (NADPH) activity [Evidence IEA]; GO_function: GO:0000293 - ferric-chelate reductase activity [Evidence IDA] [PMID 8164662]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_process: GO:0015677 - copper ion import [Evidence IDA] [PMID 9153234]; GO_process: GO:0006825 - copper ion transport [Evidence IEA]; GO_process: GO:0006811 - ion transport [Evidence IEA]; GO_process: GO:0055072 - iron ion homeostasis [Evidence IEA]; GO_process: GO:0006826 - iron ion transport [Evidence IDA] [PMID 8164662]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; Fre2p 1091834 FRE2 30034260 FRE2 Sugiyamaella lignohabitans Fre2p XP_018737228.1 1090623 D 796027 CDS AWJ20_2359 30034261 1093032..1095101 B 1 NC_031674.1 guanine nucleotide exchange factor SEC2 1095101 SEC2 30034261 SEC2 Sugiyamaella lignohabitans guanine nucleotide exchange factor SEC2 XP_018737229.1 1093032 D 796027 CDS AWJ20_2360 30034263 1096308..1097564 B 1 NC_031674.1 3-ketoacyl-CoA thiolase with broad chain length specificity; cleaves 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA during beta-oxidation of fatty acids; GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IDA] [PMID 22984289]; GO_component: GO:0005782 - peroxisomal matrix [Evidence IDA] [PMID 7754706]; GO_component: GO:0005782 - peroxisomal matrix [Evidence IDA,IMP,ISM] [PMID 8125978]; GO_component: GO:0005777 - peroxisome [Evidence IEA,IEA]; GO_component: GO:0005777 - peroxisome [Evidence IDA] [PMID 19470242]; GO_function: GO:0003988 - acetyl-CoA C-acyltransferase activity [Evidence IEA]; GO_function: GO:0003988 - acetyl-CoA C-acyltransferase activity [Evidence IDA] [PMID 7754706]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 21124907]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016746 - transferase activity, transferring acyl groups [Evidence IEA]; GO_function: GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups [Evidence IEA]; GO_process: GO:0006635 - fatty acid beta-oxidation [Evidence IMP] [PMID 12819196]; GO_process: GO:0006631 - fatty acid metabolic process [Evidence IEA,IEA]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; acetyl-CoA C-acyltransferase 1097564 POT1 30034263 POT1 Sugiyamaella lignohabitans acetyl-CoA C-acyltransferase XP_018737230.1 1096308 D 796027 CDS AWJ20_2361 30034264 complement(1100322..1102295) B 1 NC_031674.1 catabolite repression protein creC 1102295 30034264 AWJ20_2361 Sugiyamaella lignohabitans catabolite repression protein creC XP_018737231.1 1100322 R 796027 CDS AWJ20_2362 30034265 complement(1103117..1105354) B 1 NC_031674.1 transcription factor (predicted) 1105354 adn3 30034265 adn3 Sugiyamaella lignohabitans transcription factor (predicted) XP_018737232.1 1103117 R 796027 CDS AWJ20_2363 30034266 1110395..1112869 B 1 NC_031674.1 uncharacterized protein 1112869 30034266 AWJ20_2363 Sugiyamaella lignohabitans uncharacterized protein XP_018737233.1 1110395 D 796027 CDS AWJ20_2364 30034267 1115209..1115835 B 1 NC_031674.1 uncharacterized protein 1115835 30034267 AWJ20_2364 Sugiyamaella lignohabitans uncharacterized protein XP_018737234.1 1115209 D 796027 CDS AWJ20_2365 30034268 complement(1116038..1118752) B 1 NC_031674.1 Central component of GID Complex, involved in FBPase degradation; interacts strongly with Gid8p to serve as a scaffold for other GID Complex subunits; contains SPRY domain and 3 domains that are also found in Gid8p - LisH, CTLH, and CRA; required for association of Vid vesicles and actin patches in vacuole import and degradation pathway; shifts the balance of nitrogen metabolism toward glutamate production; localizes to the nucleus and the cytoplasm; GO_component: GO:0034657 - GID complex [Evidence IDA] [PMID 16872538]; GO_component: GO:0034657 - GID complex [Evidence IDA] [PMID 18508925]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0045721 - negative regulation of gluconeogenesis [Evidence IMP] [PMID 12686616]; GO_process: GO:0043161 - proteasome-mediated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 12686616]; GO_process: GO:0043161 - proteasome-mediated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 15358789]; GO_process: GO:0006808 - regulation of nitrogen utilization [Evidence IMP] [PMID 11356843]; GO_process: GO:0007039 - vacuolar protein catabolic process [Evidence IMP] [PMID 8844145]; glucose-induced degradation complex subunit VID30 1118752 VID30 30034268 VID30 Sugiyamaella lignohabitans glucose-induced degradation complex subunit VID30 XP_018737235.1 1116038 R 796027 CDS AWJ20_2366 30034269 1120497..1121939 B 1 NC_031674.1 Protein involved in RNA polymerase II transcription; is constitutively recruited to the CYC1 promoter and is required for recruitment of chromatin remodeling factors for the expression of CYC1 gene; interacts genetically or physically with RNAP II, TBP, TFIIS, and chromatin remodelling factors; central domain highly conserved throughout eukaryotes; mutations confer an Spt- phenotype; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IC] [PMID 12524336]; GO_component: GO:0005634 - nucleus [Evidence IC] [PMID 12556496]; GO_component: GO:0005634 - nucleus [Evidence IC] [PMID 18086892]; GO_component: GO:0005634 - nucleus [Evidence IC] [PMID 21094070]; GO_component: GO:0005634 - nucleus [Evidence IC] [PMID 21156811]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0001076 - RNA polymerase II transcription factor binding transcription factor activity [Evidence IPI] [PMID 12556496]; GO_function: GO:0000991 - core RNA polymerase II binding transcription factor activity [Evidence IPI] [PMID 12556496]; GO_function: GO:0000991 - core RNA polymerase II binding transcription factor activity [Evidence IPI] [PMID 18086892]; GO_process: GO:0016973 - poly(A)+ mRNA export from nucleus [Evidence IMP] [PMID 19034519]; GO_process: GO:0034401 - regulation of transcription by chromatin organization [Evidence IPI] [PMID 21094070]; GO_process: GO:0034401 - regulation of transcription by chromatin organization [Evidence IMP] [PMID 21156811]; GO_process: GO:0034243 - regulation of transcription elongation from RNA polymerase II promoter [Evidence IGI] [PMID 18086892]; GO_process: GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence IGI] [PMID 12524336]; GO_process: GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence IGI,IPI] [PMID 12556496]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA,IEA]; Spn1p 1121939 SPN1 30034269 SPN1 Sugiyamaella lignohabitans Spn1p XP_018737236.1 1120497 D 796027 CDS AWJ20_2367 30034270 complement(1124688..1127354) B 1 NC_031674.1 Subunit of the INO80 chromatin remodeling complex; relocalizes to the cytosol in response to hypoxia; GO_component: GO:0031011 - Ino80 complex [Evidence IDA] [PMID 12887900]; GO_component: GO:0031011 - Ino80 complex [Evidence IPI] [PMID 24034245]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 22932476]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22932476]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0042766 - nucleosome mobilization [Evidence IDA] [PMID 12887900]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Ies1p 1127354 IES1 30034270 IES1 Sugiyamaella lignohabitans Ies1p XP_018737237.1 1124688 R 796027 CDS AWJ20_2368 30034271 complement(1127948..1130788) B 1 NC_031674.1 kexin KEX2 1130788 KEX2 30034271 KEX2 Sugiyamaella lignohabitans kexin KEX2 XP_018737238.1 1127948 R 796027 CDS AWJ20_2369 30034272 1134055..1135047 B 1 NC_031674.1 uncharacterized protein 1135047 30034272 AWJ20_2369 Sugiyamaella lignohabitans uncharacterized protein XP_018737239.1 1134055 D 796027 CDS AWJ20_2370 30034274 join(1136646..1137050,1137109..1138725) B 1 NC_031674.1 uncharacterized protein 1138725 30034274 AWJ20_2370 Sugiyamaella lignohabitans uncharacterized protein XP_018737240.1 1136646 D 796027 CDS AWJ20_2371 30034275 1138783..1139100 B 1 NC_031674.1 uncharacterized protein 1139100 30034275 AWJ20_2371 Sugiyamaella lignohabitans uncharacterized protein XP_018737241.1 1138783 D 796027 CDS AWJ20_2372 30034276 1141365..1143068 B 1 NC_031674.1 Homeobox transcription factor; regulatory targets include genes involved in phosphate metabolism; binds cooperatively with Pho4p to the PHO5 promoter; phosphorylation of Pho2p facilitates interaction with Pho4p; relocalizes to the cytosol in response to hypoxia; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 22932476]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 1493793]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22932476]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0000978 - RNA polymerase II core promoter proximal region sequence-specific DNA binding [Evidence IDA] [PMID 2664469]; GO_function: GO:0001077 - RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription [Evidence IDA,IMP] [PMID 3303332]; GO_function: GO:0001077 - RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription [Evidence IDA,IGI,IMP] [PMID 7902583]; GO_function: GO:0001077 - RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription [Evidence IDA,IGI,IMP] [PMID 9566882]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19111667]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19158363]; GO_function: GO:0003700 - sequence-specific DNA binding transcription factor activity [Evidence IEA]; GO_process: GO:0006338 - chromatin remodeling [Evidence IMP] [PMID 2196175]; GO_process: GO:0000105 - histidine biosynthetic process [Evidence IGI,IMP] [PMID 3303332]; GO_process: GO:0043388 - positive regulation of DNA binding [Evidence IMP] [PMID 7902583]; GO_process: GO:0043388 - positive regulation of DNA binding [Evidence IDA] [PMID 8355698]; GO_process: GO:0045937 - positive regulation of phosphate metabolic process [Evidence IGI] [PMID 3915785]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IGI,IMP] [PMID 3303332]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IGI] [PMID 3915785]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IGI,IMP] [PMID 7902583]; GO_process: GO:2000679 - positive regulation of transcription regulatory region DNA binding [Evidence IMP] [PMID 9354395]; GO_process: GO:0009113 - purine nucleobase biosynthetic process [Evidence IDA,IMP] [PMID 1495962]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA,IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Pho2p 1143068 PHO2 30034276 PHO2 Sugiyamaella lignohabitans Pho2p XP_018737242.1 1141365 D 796027 CDS AWJ20_2373 30034277 1143784..1145673 B 1 NC_031674.1 hypothetical protein; copurifies with late Golgi vesicles containing the v-SNARE Tlg2p; PTM1 has a paralog, YHL017W, that arose from the whole genome duplication; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA]; GO_component: GO:0031901 - early endosome membrane [Evidence IEA]; GO_component: GO:0005768 - endosome [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; Ptm1p 1145673 PTM1 30034277 PTM1 Sugiyamaella lignohabitans Ptm1p XP_018737243.1 1143784 D 796027 CDS AWJ20_2374 30034278 complement(1145913..1146668) B 1 NC_031674.1 Ribosomal 60S subunit protein L7B; required for processing of 27SA3 pre-rRNA to 27SB pre-rRNA during assembly of large ribosomal subunit; depletion leads to a turnover of pre-rRNA; contains a conserved C-terminal Nucleic acid Binding Domain (NDB2); binds to Domain II of 25S and 5.8S rRNAs; homologous to mammalian ribosomal protein L7 and bacterial L30; RPL7B has a paralog, RPL7A, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 19466602]; GO_component: GO:0022625 - cytosolic large ribosomal subunit [Evidence IDA] [PMID 23874617]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 19466602]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IC] [PMID 23874617]; GO_process: GO:0002181 - cytoplasmic translation [Evidence IC] [PMID 23874617]; GO_process: GO:0000470 - maturation of LSU-rRNA [Evidence IMP] [PMID 22893726]; GO_process: GO:0042273 - ribosomal large subunit biogenesis [Evidence IDA] [PMID 23945946]; ribosomal 60S subunit protein L7B 1146668 RPL7B 30034278 RPL7B Sugiyamaella lignohabitans ribosomal 60S subunit protein L7B XP_018737244.1 1145913 R 796027 CDS AWJ20_2375 30034279 1149986..1153516 B 1 NC_031674.1 Major transcriptional repressor of DNA-damage-regulated genes; recruits repressors Tup1p and Cyc8p to their promoters; involved in DNA damage and replication checkpoint pathway; similar to a family of mammalian DNA binding RFX1-4 proteins; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11914276]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0000978 - RNA polymerase II core promoter proximal region sequence-specific DNA binding [Evidence IDA] [PMID 9741624]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19111667]; GO_process: GO:0000122 - negative regulation of transcription from RNA polymerase II promoter [Evidence IGI,IMP] [PMID 16835445]; GO_process: GO:0000122 - negative regulation of transcription from RNA polymerase II promoter [Evidence IDA] [PMID 9741624]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 16107689]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; Rfx1p 1153516 RFX1 30034279 RFX1 Sugiyamaella lignohabitans Rfx1p XP_018737245.1 1149986 D 796027 CDS AWJ20_2376 30034280 complement(1155104..1155835) B 1 NC_031674.1 uncharacterized protein 1155835 30034280 AWJ20_2376 Sugiyamaella lignohabitans uncharacterized protein XP_018737246.1 1155104 R 796027 CDS AWJ20_2377 30034281 join(1156905..1156922,1156993..1158342) B 1 NC_031674.1 Essential protein, constituent of 66S pre-ribosomal particles; interacts with proteins involved in ribosomal biogenesis and cell polarity; member of the SURF-6 family; GO_component: GO:0022625 - cytosolic large ribosomal subunit [Evidence IDA] [PMID 17272295]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 11489916]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 17804645]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0042273 - ribosomal large subunit biogenesis [Evidence IPI] [PMID 15100437]; GO_process: GO:0042273 - ribosomal large subunit biogenesis [Evidence IMP] [PMID 17272295]; GO_process: GO:0042273 - ribosomal large subunit biogenesis [Evidence IMP] [PMID 17804645]; GO_process: GO:0042274 - ribosomal small subunit biogenesis [Evidence IMP] [PMID 17272295]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; Rrp14p 1158342 RRP14 30034281 RRP14 Sugiyamaella lignohabitans Rrp14p XP_018737247.1 1156905 D 796027 CDS AWJ20_2378 30034282 1160584..1161783 B 1 NC_031674.1 uncharacterized protein 1161783 30034282 AWJ20_2378 Sugiyamaella lignohabitans uncharacterized protein XP_018737248.1 1160584 D 796027 CDS AWJ20_2379 30034283 1165136..1168093 B 1 NC_031674.1 GATA zinc finger protein; negatively regulates nitrogen catabolic gene expression by competing with Gat1p for GATA site binding; function requires a repressive carbon source; dimerizes with Dal80p and binds to Tor1p; GZF3 has a paralog, DAL80, that arose from the whole genome duplication; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 19380492]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19111667]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19158363]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 9171383]; GO_function: GO:0000981 - sequence-specific DNA binding RNA polymerase II transcription factor activity [Evidence IDA,IMP] [PMID 19380492]; GO_function: GO:0003700 - sequence-specific DNA binding transcription factor activity [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0051457 - maintenance of protein location in nucleus [Evidence IPI] [PMID 19380492]; GO_process: GO:0000122 - negative regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 9171383]; GO_process: GO:0090295 - nitrogen catabolite repression of transcription [Evidence IGI] [PMID 9106207]; GO_process: GO:0090295 - nitrogen catabolite repression of transcription [Evidence IMP] [PMID 9171383]; GO_process: GO:0090295 - nitrogen catabolite repression of transcription [Evidence IGI,IMP] [PMID 9171427]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA,IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Gzf3p 1168093 GZF3 30034283 GZF3 Sugiyamaella lignohabitans Gzf3p XP_018737249.1 1165136 D 796027 CDS AWJ20_2380 30034285 complement(1168592..1170895) B 1 NC_031674.1 Mitochondrial external NADH dehydrogenase; type II NAD(P)H:quinone oxidoreductase that catalyzes the oxidation of cytosolic NADH; Nde1p and Nde2p provide cytosolic NADH to the mitochondrial respiratory chain; NDE1 has a paralog, NDE2, that arose from the whole genome duplication; GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IDA,IMP] [PMID 9696750]; GO_component: GO:0005739 - mitochondrion [Evidence IDA,IMP] [PMID 9733747]; GO_function: GO:0003954 - NADH dehydrogenase activity [Evidence IDA,ISS] [PMID 9696750]; GO_function: GO:0003954 - NADH dehydrogenase activity [Evidence IDA,ISS] [PMID 9733747]; GO_function: GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_process: GO:0006116 - NADH oxidation [Evidence IDA] [PMID 12032156]; GO_process: GO:0001300 - chronological cell aging [Evidence IMP] [PMID 16436509]; GO_process: GO:0019655 - glucose catabolic process to ethanol [Evidence IMP] [PMID 9696750]; GO_process: GO:0019655 - glucose catabolic process to ethanol [Evidence IMP] [PMID 9733747]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; NADH-ubiquinone reductase (H(+)-translocating) NDE1 1170895 NDE1 30034285 NDE1 Sugiyamaella lignohabitans NADH-ubiquinone reductase (H(+)-translocating) NDE1 XP_018737250.1 1168592 R 796027 CDS AWJ20_2381 30034286 1172770..1174083 B 1 NC_031674.1 Actin-binding protein; involved in bundling of actin filaments and endocytosis of actin cortical patches; activity stimulated by Las17p; contains SH3 domain similar to Rvs167p; YSC84 has a paralog, LSB3, that arose from the whole genome duplication; GO_component: GO:0030479 - actin cortical patch [Evidence IEA]; GO_component: GO:0030479 - actin cortical patch [Evidence IDA] [PMID 12388763]; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA]; GO_function: GO:0051015 - actin filament binding [Evidence IDA] [PMID 19158382]; GO_process: GO:0051666 - actin cortical patch localization [Evidence IGI,IMP] [PMID 19158382]; GO_process: GO:0030036 - actin cytoskeleton organization [Evidence IGI] [PMID 12388763]; GO_process: GO:0051017 - actin filament bundle assembly [Evidence IDA] [PMID 19158382]; GO_process: GO:0007015 - actin filament organization [Evidence IPI] [PMID 10512884]; GO_process: GO:0006897 - endocytosis [Evidence IGI] [PMID 12388763]; Ysc84p 1174083 YSC84 30034286 YSC84 Sugiyamaella lignohabitans Ysc84p XP_018737251.1 1172770 D 796027 CDS AWJ20_2382 30034287 1177815..1178699 B 1 NC_031674.1 Peroxisomal 2,4-dienoyl-CoA reductase; auxiliary enzyme of fatty acid beta-oxidation; homodimeric enzyme required for growth and sporulation on petroselineate medium; expression induced during late sporulation and in the presence of oleate; GO_component: GO:0005782 - peroxisomal matrix [Evidence IDA] [PMID 9268358]; GO_component: GO:0005777 - peroxisome [Evidence IEA,IEA]; GO_function: GO:0008670 - 2,4-dienoyl-CoA reductase (NADPH) activity [Evidence IEA]; GO_function: GO:0008670 - 2,4-dienoyl-CoA reductase (NADPH) activity [Evidence IDA,ISS] [PMID 9268358]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_process: GO:0030437 - ascospore formation [Evidence IEP,IMP] [PMID 7969036]; GO_process: GO:0009062 - fatty acid catabolic process [Evidence IDA,ISS] [PMID 9268358]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; GO_process: GO:0030435 - sporulation resulting in formation of a cellular spore [Evidence IEA]; Sps19p 1178699 SPS19 30034287 SPS19 Sugiyamaella lignohabitans Sps19p XP_018737252.1 1177815 D 796027 CDS AWJ20_2383 30034288 1180225..1181154 B 1 NC_031674.1 top hit is XP_006261139.1 originated in Alligator mississippiensis; pirin 1181154 30034288 AWJ20_2383 Sugiyamaella lignohabitans pirin XP_018737253.1 1180225 D 796027 CDS AWJ20_2384 30034289 1183244..1186285 B 1 NC_031674.1 uncharacterized protein 1186285 30034289 AWJ20_2384 Sugiyamaella lignohabitans uncharacterized protein XP_018737254.1 1183244 D 796027 CDS AWJ20_2385 30034290 complement(1187232..1188617) B 1 NC_031674.1 uncharacterized protein 1188617 30034290 AWJ20_2385 Sugiyamaella lignohabitans uncharacterized protein XP_018737255.1 1187232 R 796027 CDS AWJ20_2386 30034291 1189187..1190119 B 1 NC_031674.1 Putative GTPase; associates with pre-60S ribosomal subunits in the nucleolus and is required for their nuclear export and maturation; GO_component: GO:0005730 - nucleolus [Evidence IEA,IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 11707418]; GO_component: GO:0005654 - nucleoplasm [Evidence IDA] [PMID 11707418]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 10684247]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 17443350]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 22735702]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 23212245]; GO_function: GO:0005525 - GTP binding [Evidence IEA,IEA]; GO_function: GO:0003924 - GTPase activity [Evidence TAS] [PMID 12362983]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0000055 - ribosomal large subunit export from nucleus [Evidence IMP] [PMID 11583615]; GO_process: GO:0000055 - ribosomal large subunit export from nucleus [Evidence IMP,IPI] [PMID 11707418]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; putative GTPase NOG2 1190119 NOG2 30034291 NOG2 Sugiyamaella lignohabitans putative GTPase NOG2 XP_018737256.1 1189187 D 796027 CDS AWJ20_2387 30034292 1190816..1191331 B 1 NC_031674.1 Putative GTPase; associates with pre-60S ribosomal subunits in the nucleolus and is required for their nuclear export and maturation; GO_component: GO:0005730 - nucleolus [Evidence IEA,IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 11707418]; GO_component: GO:0005654 - nucleoplasm [Evidence IDA] [PMID 11707418]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 10684247]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 17443350]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 22735702]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 23212245]; GO_function: GO:0005525 - GTP binding [Evidence IEA,IEA]; GO_function: GO:0003924 - GTPase activity [Evidence TAS] [PMID 12362983]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0000055 - ribosomal large subunit export from nucleus [Evidence IMP] [PMID 11583615]; GO_process: GO:0000055 - ribosomal large subunit export from nucleus [Evidence IMP,IPI] [PMID 11707418]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; putative GTPase NOG2 1191331 NOG2 30034292 NOG2 Sugiyamaella lignohabitans putative GTPase NOG2 XP_018737257.1 1190816 D 796027 CDS AWJ20_2388 30034293 complement(1191529..1192524) B 1 NC_031674.1 uncharacterized protein 1192524 30034293 AWJ20_2388 Sugiyamaella lignohabitans uncharacterized protein XP_018737258.1 1191529 R 796027 CDS AWJ20_2389 30034294 1193722..1196535 B 1 NC_031674.1 Cytoplasmic GTPase-activating protein; activates Ypt/Rab transport GTPases Ypt6p, Ypt31p and Sec4p; involved in recycling of internalized proteins and regulation of Golgi secretory function; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 12807768]; GO_function: GO:0005096 - GTPase activator activity [Evidence IEA]; GO_function: GO:0005097 - Rab GTPase activator activity [Evidence IEA]; GO_function: GO:0005097 - Rab GTPase activator activity [Evidence IDA,ISS] [PMID 10559187]; GO_function: GO:0005509 - calcium ion binding [Evidence IEA]; GO_process: GO:0006886 - intracellular protein transport [Evidence IGI] [PMID 15574876]; GO_process: GO:0043547 - positive regulation of GTPase activity [Evidence IEA]; GO_process: GO:0032851 - positive regulation of Rab GTPase activity [Evidence IEA]; GO_process: GO:0032313 - regulation of Rab GTPase activity [Evidence IEA]; Mdr1p 1196535 MDR1 30034294 MDR1 Sugiyamaella lignohabitans Mdr1p XP_018737259.1 1193722 D 796027 CDS AWJ20_2390 30034296 complement(1197361..1198131) B 1 NC_031674.1 Component of the ESCRT-I complex; complex is involved in ubiquitin-dependent sorting of proteins into the endosome; conserved C-terminal domain interacts with ESCRT-III subunit Vps20p; other members include Stp22p, Srn2p, Vps28p, and Mvb12p; GO_component: GO:0000813 - ESCRT I complex [Evidence IPI] [PMID 11511343]; GO_component: GO:0000813 - ESCRT I complex [Evidence IDA] [PMID 15044434]; GO_component: GO:0000813 - ESCRT I complex [Evidence IPI] [PMID 16615894]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005768 - endosome [Evidence IEA,IEA]; GO_component: GO:0005768 - endosome [Evidence IDA] [PMID 11511343]; GO_component: GO:0031902 - late endosome membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0032403 - protein complex binding [Evidence IDA,IPI] [PMID 17215868]; GO_process: GO:0006612 - protein targeting to membrane [Evidence IMP,IPI] [PMID 11511343]; GO_process: GO:0006623 - protein targeting to vacuole [Evidence IMP,IPI] [PMID 11511343]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0043162 - ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway [Evidence IC] [PMID 15086794]; ESCRT-I subunit protein VPS28 1198131 VPS28 30034296 VPS28 Sugiyamaella lignohabitans ESCRT-I subunit protein VPS28 XP_018737260.1 1197361 R 796027 CDS AWJ20_2391 30034297 1200110..1202251 B 1 NC_031674.1 Fatty-acyl coenzyme A oxidase; involved in the fatty acid beta-oxidation pathway; localized to the peroxisomal matrix; GO_component: GO:0005782 - peroxisomal matrix [Evidence IDA] [PMID 11967269]; GO_component: GO:0005777 - peroxisome [Evidence IEA,IEA,IEA]; GO_function: GO:0003995 - acyl-CoA dehydrogenase activity [Evidence IEA]; GO_function: GO:0003997 - acyl-CoA oxidase activity [Evidence IEA,IEA]; GO_function: GO:0003997 - acyl-CoA oxidase activity [Evidence ISA] [PMID 2189786]; GO_function: GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0016627 - oxidoreductase activity, acting on the CH-CH group of donors [Evidence IEA]; GO_process: GO:0006635 - fatty acid beta-oxidation [Evidence IEA]; GO_process: GO:0006635 - fatty acid beta-oxidation [Evidence IMP] [PMID 12819196]; GO_process: GO:0033540 - fatty acid beta-oxidation using acyl-CoA oxidase [Evidence IEA]; GO_process: GO:0033540 - fatty acid beta-oxidation using acyl-CoA oxidase [Evidence ISA] [PMID 2189786]; GO_process: GO:0006631 - fatty acid metabolic process [Evidence IEA,IEA]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; acyl-CoA oxidase 1202251 POX1 30034297 POX1 Sugiyamaella lignohabitans acyl-CoA oxidase XP_018737261.1 1200110 D 796027 CDS AWJ20_2392 30034298 1204625..1205914 B 1 NC_031674.1 uncharacterized protein 1205914 30034298 AWJ20_2392 Sugiyamaella lignohabitans uncharacterized protein XP_018737262.1 1204625 D 796027 CDS AWJ20_2393 30034299 1214826..1215629 B 1 NC_031674.1 Dihydrouridine synthase; member of a family of dihydrouridine synthases including Dus1p, Smm1p, Dus3p, and Dus4p; modifies uridine residues at position 20 of cytoplasmic tRNAs; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0017150 - tRNA dihydrouridine synthase activity [Evidence IEA]; GO_function: GO:0017150 - tRNA dihydrouridine synthase activity [Evidence IDA] [PMID 12003496]; GO_function: GO:0017150 - tRNA dihydrouridine synthase activity [Evidence IMP] [PMID 14970222]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0002943 - tRNA dihydrouridine synthesis [Evidence IEA]; GO_process: GO:0006400 - tRNA modification [Evidence IDA] [PMID 12003496]; GO_process: GO:0006400 - tRNA modification [Evidence IMP] [PMID 14970222]; GO_process: GO:0008033 - tRNA processing [Evidence IEA,IEA]; GO_process: GO:0008033 - tRNA processing [Evidence IGI] [PMID 12559567]; Smm1p 1215629 SMM1 30034299 SMM1 Sugiyamaella lignohabitans Smm1p XP_018737263.1 1214826 D 796027 CDS AWJ20_2394 30034300 complement(1217874..1219565) B 1 NC_031674.1 Xylulokinase; converts D-xylulose and ATP to xylulose 5-phosphate and ADP; rate limiting step in fermentation of xylulose; required for xylose fermentation by recombinant S. cerevisiae strains; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016773 - phosphotransferase activity, alcohol group as acceptor [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0004856 - xylulokinase activity [Evidence IEA]; GO_function: GO:0004856 - xylulokinase activity [Evidence IMP,ISS] [PMID 9595677]; GO_process: GO:0042732 - D-xylose metabolic process [Evidence IEA]; GO_process: GO:0005975 - carbohydrate metabolic process [Evidence IEA,IEA]; GO_process: GO:0046835 - carbohydrate phosphorylation [Evidence IEA]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; GO_process: GO:0005998 - xylulose catabolic process [Evidence IDA] [PMID 10981687]; xylulokinase 1219565 XKS1 30034300 XKS1 Sugiyamaella lignohabitans xylulokinase XP_018737264.1 1217874 R 796027 CDS AWJ20_2395 30034301 complement(1219869..1220156) B 1 NC_031674.1 Subunit of the signal peptidase complex (SPC); SPC cleaves the signal sequence from proteins targeted to the endoplasmic reticulum (ER); homolog of the SPC12 subunit of mammalian signal peptidase complex; protein abundance increases in response to DNA replication stress; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005787 - signal peptidase complex [Evidence IEA]; GO_component: GO:0005787 - signal peptidase complex [Evidence IDA] [PMID 1846444]; GO_component: GO:0005787 - signal peptidase complex [Evidence IDA] [PMID 8910564]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_process: GO:0045047 - protein targeting to ER [Evidence IGI,IPI] [PMID 8663399]; GO_process: GO:0006508 - proteolysis [Evidence IEA]; GO_process: GO:0006465 - signal peptide processing [Evidence IEA]; GO_process: GO:0006465 - signal peptide processing [Evidence IGI,IMP,ISS] [PMID 8663399]; Spc1p 1220156 SPC1 30034301 SPC1 Sugiyamaella lignohabitans Spc1p XP_018737265.1 1219869 R 796027 CDS AWJ20_2396 30034302 complement(1221178..1222974) B 1 NC_031674.1 Mitochondrial hypothetical protein involved in lipid homeostasis; integral membrane protein that localizes to the mitochondrial inner membrane; involved in mitochondrial morphology; non-essential gene which interacts genetically with MDM10, and other members of the ERMES complex; transcription is periodic during the metabolic cycle; homologous to human aarF domain containing kinase, ADCK1; GO_component: GO:0032592 - integral component of mitochondrial membrane [Evidence IDA] [PMID 23781023]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IDA] [PMID 23781023]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0016772 - transferase activity, transferring phosphorus-containing groups [Evidence IEA]; GO_process: GO:0055088 - lipid homeostasis [Evidence IGI] [PMID 23781023]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0007005 - mitochondrion organization [Evidence IGI,IMP] [PMID 23781023]; Mcp2p 1222974 MCP2 30034302 MCP2 Sugiyamaella lignohabitans Mcp2p XP_018737266.1 1221178 R 796027 CDS AWJ20_2397 30034303 1223668..1224993 B 1 NC_031674.1 Arginine N5 methyltransferase; methylates ribosomal protein Rpl12 (L12) on Arg67; relative distribution to the nucleus increases upon DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 17448464]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 17448464]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_function: GO:0008168 - methyltransferase activity [Evidence IEA]; GO_function: GO:0016274 - protein-arginine N-methyltransferase activity [Evidence IEA]; GO_function: GO:0019702 - protein-arginine N5-methyltransferase activity [Evidence IDA] [PMID 11856739]; GO_function: GO:0019702 - protein-arginine N5-methyltransferase activity [Evidence IMP] [PMID 9873020]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0032259 - methylation [Evidence IEA]; GO_process: GO:0035246 - peptidyl-arginine N-methylation [Evidence IEA]; GO_process: GO:0018216 - peptidyl-arginine methylation [Evidence IDA] [PMID 11856739]; GO_process: GO:0018216 - peptidyl-arginine methylation [Evidence IMP] [PMID 9873020]; Rmt2p 1224993 RMT2 30034303 RMT2 Sugiyamaella lignohabitans Rmt2p XP_018737267.1 1223668 D 796027 CDS AWJ20_2398 30034304 1225856..1227454 B 1 NC_031674.1 Lanosterol 14-alpha-demethylase; catalyzes the C-14 demethylation of lanosterol to form 4,4''-dimethyl cholesta-8,14,24-triene-3-beta-ol in the ergosterol biosynthesis pathway; member of the cytochrome P450 family; associated and coordinately regulated with the P450 reductase Ncp1p; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 11914276]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 15951236]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_function: GO:0020037 - heme binding [Evidence IEA]; GO_function: GO:0005506 - iron ion binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004497 - monooxygenase activity [Evidence IEA,IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [Evidence IEA]; GO_function: GO:0008398 - sterol 14-demethylase activity [Evidence IEA]; GO_function: GO:0008398 - sterol 14-demethylase activity [Evidence IDA] [PMID 9087488]; GO_process: GO:0070988 - demethylation [Evidence IEA]; GO_process: GO:0006696 - ergosterol biosynthetic process [Evidence IMP] [PMID 200835]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0006694 - steroid biosynthetic process [Evidence IEA]; GO_process: GO:0008202 - steroid metabolic process [Evidence IEA]; GO_process: GO:0016126 - sterol biosynthetic process [Evidence IEA]; sterol 14-demethylase 1227454 ERG11 30034304 ERG11 Sugiyamaella lignohabitans sterol 14-demethylase XP_018737268.1 1225856 D 796027 CDS AWJ20_2399 30034305 complement(1228151..1231531) B 1 NC_031674.1 Vacuolar membrane protein required for magnesium homeostasis; putative magnesium transporter; has similarity to Alr1p and Alr2p, which mediate influx of Mg2+ and other divalent cations; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 19001347]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 19720860]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA,IEA]; GO_function: GO:0015095 - magnesium ion transmembrane transporter activity [Evidence ISS] [PMID 9430719]; GO_function: GO:0046873 - metal ion transmembrane transporter activity [Evidence IEA]; GO_process: GO:0010961 - cellular magnesium ion homeostasis [Evidence IMP] [PMID 19720860]; GO_process: GO:0030001 - metal ion transport [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; putative Mg(2+) transporter MNR2 1231531 MNR2 30034305 MNR2 Sugiyamaella lignohabitans putative Mg(2+) transporter MNR2 XP_018737269.1 1228151 R 796027 CDS AWJ20_2400 30034308 1228659..1228877 B 1 NC_031674.1 uncharacterized protein 1228877 30034308 AWJ20_2400 Sugiyamaella lignohabitans uncharacterized protein XP_018737270.1 1228659 D 796027 CDS AWJ20_2401 30034309 1234103..1236961 B 1 NC_031674.1 Carboxy-terminal domain (CTD) phosphatase; essential for dephosphorylation of the repeated C-terminal domain of the RNA polymerase II large subunit (Rpo21p); relocalizes to the cytosol in response to hypoxia; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 22932476]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IPI] [PMID 11003641]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22932476]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0004721 - phosphoprotein phosphatase activity [Evidence IEA,IEA,IEA]; GO_function: GO:0004722 - protein serine/threonine phosphatase activity [Evidence IDA,IMP] [PMID 10445027]; GO_function: GO:0004722 - protein serine/threonine phosphatase activity [Evidence IDA] [PMID 11904169]; GO_process: GO:0070940 - dephosphorylation of RNA polymerase II C-terminal domain [Evidence IDA,IMP] [PMID 10445027]; GO_process: GO:0070940 - dephosphorylation of RNA polymerase II C-terminal domain [Evidence IDA] [PMID 11904169]; GO_process: GO:0070940 - dephosphorylation of RNA polymerase II C-terminal domain [Evidence IDA] [PMID 16301539]; GO_process: GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence IGI,IMP] [PMID 10445027]; GO_process: GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence IGI] [PMID 12370301]; Fcp1p 1236961 FCP1 30034309 FCP1 Sugiyamaella lignohabitans Fcp1p XP_018737271.1 1234103 D 796027 CDS AWJ20_2402 30034310 1237917..1239839 B 1 NC_031674.1 phosphoribomutase PRM15 1239839 PRM15 30034310 PRM15 Sugiyamaella lignohabitans phosphoribomutase PRM15 XP_018737272.1 1237917 D 796027 CDS AWJ20_2403 30034311 1241032..1241889 B 1 NC_031674.1 Component of the mannan polymerase I; complex contains Van1p and Mnn9p and is involved in the first steps of mannan synthesis; mutants are vanadate-resistant; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA]; GO_component: GO:0000136 - alpha-1,6-mannosyltransferase complex [Evidence IPI] [PMID 9430634]; GO_component: GO:0000136 - alpha-1,6-mannosyltransferase complex [Evidence IDA] [PMID 9434768]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0000009 - alpha-1,6-mannosyltransferase activity [Evidence IDA] [PMID 12235155]; GO_process: GO:0006487 - protein N-linked glycosylation [Evidence IDA,IMP] [PMID 9430634]; GO_process: GO:0040008 - regulation of growth [Evidence IEA]; GO_process: GO:0030435 - sporulation resulting in formation of a cellular spore [Evidence IEA]; Van1p 1241889 VAN1 30034311 VAN1 Sugiyamaella lignohabitans Van1p XP_018737273.1 1241032 D 796027 CDS AWJ20_2408 30034316 1247909..1249009 B 1 NC_031674.1 Member of the protein disulfide isomerase (PDI) family; interacts with and inhibits the chaperone activity of Cne1p; MPD1 overexpression in a pdi1 null mutant suppresses defects in Pdi1p functions such as carboxypeptidase Y maturation; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005788 - endoplasmic reticulum lumen [Evidence IEA]; GO_component: GO:0000324 - fungal-type vacuole [Evidence IDA] [PMID 14562095]; GO_function: GO:0016853 - isomerase activity [Evidence IEA]; GO_function: GO:0005515 - protein binding [Evidence IPI] [PMID 16002399]; GO_function: GO:0003756 - protein disulfide isomerase activity [Evidence IEA]; GO_function: GO:0003756 - protein disulfide isomerase activity [Evidence IGI,IMP,ISS] [PMID 11157982]; GO_function: GO:0003756 - protein disulfide isomerase activity [Evidence IDA] [PMID 16002399]; GO_function: GO:0015035 - protein disulfide oxidoreductase activity [Evidence IEA]; GO_function: GO:0015035 - protein disulfide oxidoreductase activity [Evidence IGI,ISS] [PMID 11157982]; GO_function: GO:0015035 - protein disulfide oxidoreductase activity [Evidence IDA] [PMID 16002399]; GO_function: GO:0019153 - protein-disulfide reductase (glutathione) activity [Evidence IDA] [PMID 16002399]; GO_process: GO:0045454 - cell redox homeostasis [Evidence IEA]; GO_process: GO:0006662 - glycerol ether metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; GO_process: GO:0006457 - protein folding [Evidence IGI] [PMID 11157982]; protein disulfide isomerase MPD1 1249009 MPD1 30034316 MPD1 Sugiyamaella lignohabitans protein disulfide isomerase MPD1 XP_018737274.1 1247909 D 796027 CDS AWJ20_2409 30034317 1251514..1252203 B 1 NC_031674.1 Component of 90S preribosomes; involved in early cleavages of the 35S pre-rRNA and in production of the 40S ribosomal subunit; GO_component: GO:0030686 - 90S preribosome [Evidence IDA] [PMID 20038530]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 20038530]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0000469 - cleavage involved in rRNA processing [Evidence IMP] [PMID 20038530]; GO_process: GO:0000462 - maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 12837249]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0042274 - ribosomal small subunit biogenesis [Evidence IMP] [PMID 20038530]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; Rrp36p 1252203 RRP36 30034317 RRP36 Sugiyamaella lignohabitans Rrp36p XP_018737275.1 1251514 D 796027 CDS AWJ20_2410 30034319 complement(1252809..1253321) B 1 NC_031674.1 Protein with rhodanese activity; contains a rhodanese-like domain similar to Rdl1p, Uba4p, Tum1p, and Ych1p; overexpression causes a cell cycle delay; null mutant displays elevated frequency of mitochondrial genome loss; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0004792 - thiosulfate sulfurtransferase activity [Evidence IEA]; GO_function: GO:0004792 - thiosulfate sulfurtransferase activity [Evidence IDA] [PMID 19864628]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0008152 - metabolic process [Evidence IEA,IEA]; Rdl2p 1253321 RDL2 30034319 RDL2 Sugiyamaella lignohabitans Rdl2p XP_018737276.1 1252809 R 796027 CDS AWJ20_2411 30034320 1254409..1256739 B 1 NC_031674.1 Protein involved in cellular response to oxidative stress; required for oxidation of specific cysteine residues of transcription factor Yap1p, resulting in nuclear localization of Yap1p in response to stress; YBP1 has a paralog, YBP2, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0034599 - cellular response to oxidative stress [Evidence IDA] [PMID 12743123]; Ybp1p 1256739 YBP1 30034320 YBP1 Sugiyamaella lignohabitans Ybp1p XP_018737277.1 1254409 D 796027 CDS AWJ20_2412 30034321 complement(1256980..1258521) B 1 NC_031674.1 Subunit of the HIR complex; HIR is a nucleosome assembly complex involved in regulation of histone gene transcription; mutants display synthetic defects with subunits of FACT, a complex that allows passage of RNA Pol II through nucleosomes; GO_component: GO:0000417 - HIR complex [Evidence IDA,IPI] [PMID 16264190]; GO_component: GO:0000417 - HIR complex [Evidence IDA] [PMID 16303565]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IC] [PMID 12524332]; GO_function: GO:0003677 - DNA binding [Evidence IDA] [PMID 16264190]; GO_function: GO:0031491 - nucleosome binding [Evidence IMP] [PMID 16264190]; GO_process: GO:0006336 - DNA replication-independent nucleosome assembly [Evidence IDA] [PMID 16264190]; GO_process: GO:0006336 - DNA replication-independent nucleosome assembly [Evidence IDA] [PMID 16303565]; GO_process: GO:0016568 - chromatin modification [Evidence IEA]; GO_process: GO:0000083 - regulation of transcription involved in G1/S transition of mitotic cell cycle [Evidence IMP] [PMID 1406694]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006368 - transcription elongation from RNA polymerase II promoter [Evidence IGI] [PMID 16449659]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Hpc2p 1258521 HPC2 30034321 HPC2 Sugiyamaella lignohabitans Hpc2p XP_018737278.1 1256980 R 796027 CDS AWJ20_2413 30034322 complement(1259199..1261634) B 1 NC_031674.1 Transcriptional activator of nitrogen catabolite repression genes; contains a GATA-1-type zinc finger DNA-binding motif; activity and localization regulated by nitrogen limitation and Ure2p; different translational starts produce two major and two minor isoforms that are differentially regulated and localized; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 10799523]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 10799523]; GO_component: GO:0005634 - nucleus [Evidence IPI] [PMID 19380492]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0001077 - RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription [Evidence ISA] [PMID 7568152]; GO_function: GO:0001077 - RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription [Evidence IMP] [PMID 9106207]; GO_function: GO:0001076 - RNA polymerase II transcription factor binding transcription factor activity [Evidence IMP] [PMID 19380492]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19111667]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19158363]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IGI] [PMID 7568152]; GO_function: GO:0003700 - sequence-specific DNA binding transcription factor activity [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0090294 - nitrogen catabolite activation of transcription [Evidence IGI,IMP] [PMID 7568152]; GO_process: GO:0090294 - nitrogen catabolite activation of transcription [Evidence IGI,IMP] [PMID 8622686]; GO_process: GO:0001080 - nitrogen catabolite activation of transcription from RNA polymerase II promoter [Evidence IGI,IMP] [PMID 7568152]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA,IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Gat1p 1261634 GAT1 30034322 GAT1 Sugiyamaella lignohabitans Gat1p XP_018737279.1 1259199 R 796027 CDS AWJ20_2414 30034323 1265764..1267278 B 1 NC_031674.1 uncharacterized protein 1267278 30034323 AWJ20_2414 Sugiyamaella lignohabitans uncharacterized protein XP_018737280.1 1265764 D 796027 CDS AWJ20_2415 30034324 1268608..1270092 B 1 NC_031674.1 uncharacterized protein 1270092 30034324 AWJ20_2415 Sugiyamaella lignohabitans uncharacterized protein XP_018737281.1 1268608 D 796027 CDS AWJ20_2416 30034325 1272725..1274539 B 1 NC_031674.1 Plasma membrane transporter of the major facilitator superfamily; member of the 12-spanner drug:H(+) antiporter DHA1 family; exports copper; has broad substrate specificity and can transport many mono- and divalent cations; transports a variety of drugs and is required for resistance to quinidine, barban, cisplatin, and bleomycin; contributes to potassium homeostasis; expression is regulated by copper; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0005887 - integral component of plasma membrane [Evidence IDA] [PMID 15215105]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_function: GO:0008324 - cation transmembrane transporter activity [Evidence IMP] [PMID 23106982]; GO_function: GO:0015238 - drug transmembrane transporter activity [Evidence IMP] [PMID 15215105]; GO_function: GO:0015238 - drug transmembrane transporter activity [Evidence IMP] [PMID 15649438]; GO_function: GO:0005215 - transporter activity [Evidence IEA]; GO_process: GO:0060003 - copper ion export [Evidence IMP] [PMID 23106982]; GO_process: GO:0006855 - drug transmembrane transport [Evidence IMP] [PMID 15215105]; GO_process: GO:0006855 - drug transmembrane transport [Evidence IMP] [PMID 15649438]; GO_process: GO:0006811 - ion transport [Evidence IEA]; GO_process: GO:0010107 - potassium ion import [Evidence IGI,IMP] [PMID 17189489]; GO_process: GO:0006813 - potassium ion transport [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; Qdr2p 1274539 QDR2 30034325 QDR2 Sugiyamaella lignohabitans Qdr2p XP_018737282.1 1272725 D 796027 CDS AWJ20_2417 30034326 complement(1274681..1276531) B 1 NC_031674.1 uncharacterized protein 1276531 30034326 AWJ20_2417 Sugiyamaella lignohabitans uncharacterized protein XP_018737283.1 1274681 R 796027 CDS AWJ20_2418 30034327 complement(1276801..1280871) B 1 NC_031674.1 uncharacterized protein 1280871 30034327 AWJ20_2418 Sugiyamaella lignohabitans uncharacterized protein XP_018737284.1 1276801 R 796027 CDS AWJ20_2419 30034328 1283360..1284340 B 1 NC_031674.1 uncharacterized protein 1284340 30034328 AWJ20_2419 Sugiyamaella lignohabitans uncharacterized protein XP_018737285.1 1283360 D 796027 CDS AWJ20_2420 30034330 complement(1284583..1285950) B 1 NC_031674.1 N-formyltyrosine oxidase; sporulation-specific microsomal enzyme involved in the production of N,N-bisformyl dityrosine required for spore wall maturation, homologous to cytochrome P-450s; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0020037 - heme binding [Evidence IEA]; GO_function: GO:0005506 - iron ion binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004497 - monooxygenase activity [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence ISS] [PMID 8183942]; GO_function: GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [Evidence IEA]; GO_process: GO:0030476 - ascospore wall assembly [Evidence IDA,IMP] [PMID 8183942]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0030435 - sporulation resulting in formation of a cellular spore [Evidence IEA]; Dit2p 1285950 DIT2 30034330 DIT2 Sugiyamaella lignohabitans Dit2p XP_018737286.1 1284583 R 796027 CDS AWJ20_2422 30034332 complement(1288152..1291880) B 1 NC_031674.1 Plasma membrane ATP-binding cassette (ABC) transporter; multidrug transporter involved in multidrug resistance and resistance to singlet oxygen species; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 12469340]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016887 - ATPase activity [Evidence IEA]; GO_function: GO:0042626 - ATPase activity, coupled to transmembrane movement of substances [Evidence IEA]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_function: GO:0008559 - xenobiotic-transporting ATPase activity [Evidence TAS] [PMID 10581358]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0042493 - response to drug [Evidence TAS] [PMID 11421285]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; ATP-binding cassette transporter SNQ2 1291880 SNQ2 30034332 SNQ2 Sugiyamaella lignohabitans ATP-binding cassette transporter SNQ2 XP_018737287.1 1288152 R 796027 CDS AWJ20_2423 30034333 complement(1292034..1292681) B 1 NC_031674.1 Plasma membrane ATP-binding cassette (ABC) transporter; weak-acid-inducible multidrug transporter required for weak organic acid resistance; induced by sorbate and benzoate and regulated by War1p; mutants exhibit sorbate hypersensitivity; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 9687494]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016887 - ATPase activity [Evidence IEA]; GO_function: GO:0042626 - ATPase activity, coupled to transmembrane movement of substances [Evidence IEA]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_function: GO:0005342 - organic acid transmembrane transporter activity [Evidence IDA] [PMID 10419965]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0015849 - organic acid transport [Evidence IDA] [PMID 10419965]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; ATP-binding cassette multidrug transporter PDR12 1292681 PDR12 30034333 PDR12 Sugiyamaella lignohabitans ATP-binding cassette multidrug transporter PDR12 XP_018737288.1 1292034 R 796027 CDS AWJ20_2424 30034334 complement(1294391..1295758) B 1 NC_031674.1 uncharacterized protein 1295758 30034334 AWJ20_2424 Sugiyamaella lignohabitans uncharacterized protein XP_018737289.1 1294391 R 796027 CDS AWJ20_2425 30034335 1300606..1306854 B 1 NC_031674.1 histone acetyltransferase TRA1 1306854 TRA1 30034335 TRA1 Sugiyamaella lignohabitans histone acetyltransferase TRA1 XP_018737290.1 1300606 D 796027 CDS AWJ20_2426 30034336 1307070..1311266 B 1 NC_031674.1 histone acetyltransferase TRA1 1311266 TRA1 30034336 TRA1 Sugiyamaella lignohabitans histone acetyltransferase TRA1 XP_018737291.1 1307070 D 796027 CDS AWJ20_2427 30034337 1311555..1311896 B 1 NC_031674.1 histone acetyltransferase TRA1 1311896 TRA1 30034337 TRA1 Sugiyamaella lignohabitans histone acetyltransferase TRA1 XP_018737292.1 1311555 D 796027 CDS AWJ20_2428 30034338 complement(1312853..1316188) B 1 NC_031674.1 Ubiquitin hydrolase that deubiquitinates ILV cargo proteins; required for recycling ubiquitin from proteasome-bound ubiquitinated intermediates, acts at the late endosome/prevacuolar compartment to recover ubiquitin from ubiquitinated membrane proteins en route to the vacuole; DOA4 has a paralog, UBP5, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005768 - endosome [Evidence IEA]; GO_component: GO:0005768 - endosome [Evidence IDA] [PMID 17145966]; GO_component: GO:0031902 - late endosome membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0000502 - proteasome complex [Evidence IPI] [PMID 10069815]; GO_function: GO:0008234 - cysteine-type peptidase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_function: GO:0004843 - ubiquitin-specific protease activity [Evidence IDA] [PMID 19410548]; GO_function: GO:0004843 - ubiquitin-specific protease activity [Evidence IDA,IMP] [PMID 8247125]; GO_process: GO:0006897 - endocytosis [Evidence IMP] [PMID 9119204]; GO_process: GO:0010995 - free ubiquitin chain depolymerization [Evidence IDA] [PMID 19410548]; GO_process: GO:0070676 - intralumenal vesicle formation [Evidence IGI] [PMID 23444383]; GO_process: GO:0006508 - proteolysis [Evidence IEA]; GO_process: GO:0006275 - regulation of DNA replication [Evidence IMP] [PMID 8657109]; GO_process: GO:0010992 - ubiquitin homeostasis [Evidence IMP] [PMID 19410548]; GO_process: GO:0006511 - ubiquitin-dependent protein catabolic process [Evidence IEA]; GO_process: GO:0006511 - ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 17145966]; GO_process: GO:0043162 - ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway [Evidence IMP] [PMID 17376168]; Doa4p 1316188 DOA4 30034338 DOA4 Sugiyamaella lignohabitans Doa4p XP_018737293.1 1312853 R 796027 CDS AWJ20_2429 30034339 complement(1317256..1319046) B 1 NC_031674.1 Component of serine palmitoyltransferase; responsible along with Lcb1p for the first committed step in sphingolipid synthesis, which is the condensation of serine with palmitoyl-CoA to form 3-ketosphinganine; GO_component: GO:0035339 - SPOTS complex [Evidence IDA] [PMID 20182505]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0017059 - serine C-palmitoyltransferase complex [Evidence IMP] [PMID 1556076]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0030170 - pyridoxal phosphate binding [Evidence IEA]; GO_function: GO:0004758 - serine C-palmitoyltransferase activity [Evidence IEA]; GO_function: GO:0004758 - serine C-palmitoyltransferase activity [Evidence IMP] [PMID 1556076]; GO_function: GO:0004758 - serine C-palmitoyltransferase activity [Evidence IGI] [PMID 8058731]; GO_function: GO:0016740 - transferase activity [Evidence IEA,IEA]; GO_function: GO:0016746 - transferase activity, transferring acyl groups [Evidence IEA]; GO_process: GO:0009058 - biosynthetic process [Evidence IEA]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0030148 - sphingolipid biosynthetic process [Evidence IMP] [PMID 1556076]; GO_process: GO:0006665 - sphingolipid metabolic process [Evidence IEA,IEA]; serine C-palmitoyltransferase LCB2 1319046 LCB2 30034339 LCB2 Sugiyamaella lignohabitans serine C-palmitoyltransferase LCB2 XP_018737294.1 1317256 R 796027 CDS AWJ20_2430 30034341 1321509..1323953 B 1 NC_031674.1 tRNA ligase; required for tRNA splicing and for both splicing and translation of HAC1 mRNA in the UPR; has phosphodiesterase, polynucleotide kinase, and ligase activities; localized at the inner nuclear envelope and partially to polysomes; GO_component: GO:0005637 - nuclear inner membrane [Evidence IDA] [PMID 3312232]; GO_component: GO:0005844 - polysome [Evidence IDA] [PMID 20844078]; GO_function: GO:0004113 - 2',3'-cyclic-nucleotide 3'-phosphodiesterase activity [Evidence IDA] [PMID 6297798]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0051730 - GTP-dependent polyribonucleotide 5'-hydroxyl-kinase activity [Evidence IDA] [PMID 8428918]; GO_function: GO:0003972 - RNA ligase (ATP) activity [Evidence IEA,IEA]; GO_function: GO:0003972 - RNA ligase (ATP) activity [Evidence IDA] [PMID 3277966]; GO_function: GO:0003972 - RNA ligase (ATP) activity [Evidence IDA] [PMID 3512545]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0004519 - endonuclease activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0004518 - nuclease activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0030969 - UFP-specific transcription factor mRNA processing involved in endoplasmic reticulum unfolded protein response [Evidence IMP] [PMID 8898194]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0090305 - nucleic acid phosphodiester bond hydrolysis [Evidence IEA]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; GO_process: GO:0032056 - positive regulation of translation in response to stress [Evidence IMP,IPI] [PMID 20844078]; GO_process: GO:0008033 - tRNA processing [Evidence IEA]; GO_process: GO:0006388 - tRNA splicing, via endonucleolytic cleavage and ligation [Evidence IEA]; GO_process: GO:0006388 - tRNA splicing, via endonucleolytic cleavage and ligation [Evidence IMP] [PMID 1537841]; GO_process: GO:0006388 - tRNA splicing, via endonucleolytic cleavage and ligation [Evidence IDA] [PMID 2207062]; tRNA ligase 1323953 TRL1 30034341 TRL1 Sugiyamaella lignohabitans tRNA ligase XP_018737295.1 1321509 D 796027 CDS AWJ20_2431 30034342 complement(1324199..1325152) B 1 NC_031674.1 Ornithine carbamoyltransferase; also known as carbamoylphosphate:L-ornithine carbamoyltransferase; catalyzes the biosynthesis of the arginine precursor citrulline; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 205532]; GO_function: GO:0016597 - amino acid binding [Evidence IEA]; GO_function: GO:0016743 - carboxyl- or carbamoyltransferase activity [Evidence IEA]; GO_function: GO:0004585 - ornithine carbamoyltransferase activity [Evidence IEA]; GO_function: GO:0004585 - ornithine carbamoyltransferase activity [Evidence IDA] [PMID 7029528]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006526 - arginine biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0006526 - arginine biosynthetic process [Evidence IMP] [PMID 2897249]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0006520 - cellular amino acid metabolic process [Evidence IEA]; GO_process: GO:0006591 - ornithine metabolic process [Evidence IEA]; ornithine carbamoyltransferase 1325152 ARG3 30034342 ARG3 Sugiyamaella lignohabitans ornithine carbamoyltransferase XP_018737296.1 1324199 R 796027 CDS AWJ20_2432 30034343 1329038..1332046 B 1 NC_031674.1 uncharacterized protein 1332046 30034343 AWJ20_2432 Sugiyamaella lignohabitans uncharacterized protein XP_018737297.1 1329038 D 796027 CDS AWJ20_2433 30034344 complement(1334633..1336444) B 1 NC_031674.1 uncharacterized protein 1336444 30034344 AWJ20_2433 Sugiyamaella lignohabitans uncharacterized protein XP_018737298.1 1334633 R 796027 CDS AWJ20_2434 30034345 complement(1337925..1339052) B 1 NC_031674.1 High-affinity zinc transporter of the plasma membrane; responsible for the majority of zinc uptake; transcription is induced under low-zinc conditions by the Zap1p transcription factor; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0005887 - integral component of plasma membrane [Evidence IMP,ISS] [PMID 8637895]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA,IEA]; GO_function: GO:0000006 - high affinity zinc uptake transmembrane transporter activity [Evidence IMP,ISS] [PMID 8637895]; GO_function: GO:0046873 - metal ion transmembrane transporter activity [Evidence IEA]; GO_function: GO:0005385 - zinc ion transmembrane transporter activity [Evidence IEA]; GO_process: GO:0006830 - high-affinity zinc ion transport [Evidence IMP] [PMID 8637895]; GO_process: GO:0006811 - ion transport [Evidence IEA]; GO_process: GO:0030001 - metal ion transport [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0071577 - zinc ion transmembrane transport [Evidence IEA]; GO_process: GO:0006829 - zinc ion transport [Evidence IEA]; high-affinity Zn(2+) transporter ZRT1 1339052 ZRT1 30034345 ZRT1 Sugiyamaella lignohabitans high-affinity Zn(2+) transporter ZRT1 XP_018737299.1 1337925 R 796027 CDS AWJ20_2435 30034346 1339972..1341039 B 1 NC_031674.1 mitochondrial inner membrane protein 1341039 30034346 AWJ20_2435 Sugiyamaella lignohabitans mitochondrial inner membrane protein XP_018737300.1 1339972 D 796027 CDS AWJ20_2436 30034347 complement(1342444..1343886) B 1 NC_031674.1 uncharacterized protein 1343886 30034347 AWJ20_2436 Sugiyamaella lignohabitans uncharacterized protein XP_018737301.1 1342444 R 796027 CDS AWJ20_2437 30034348 1344610..1345605 B 1 NC_031674.1 uncharacterized protein 1345605 30034348 AWJ20_2437 Sugiyamaella lignohabitans uncharacterized protein XP_018737302.1 1344610 D 796027 CDS AWJ20_2438 30034349 1346137..1347597 B 1 NC_031674.1 beta-lactamase family protein 1347597 30034349 AWJ20_2438 Sugiyamaella lignohabitans beta-lactamase family protein XP_018737303.1 1346137 D 796027 CDS AWJ20_2439 30034350 complement(1347834..1349447) B 1 NC_031674.1 uncharacterized protein 1349447 30034350 AWJ20_2439 Sugiyamaella lignohabitans uncharacterized protein XP_018737304.1 1347834 R 796027 CDS AWJ20_2441 30034353 1353129..1354343 B 1 NC_031674.1 uncharacterized protein 1354343 30034353 AWJ20_2441 Sugiyamaella lignohabitans uncharacterized protein XP_018737305.1 1353129 D 796027 CDS AWJ20_2442 30034354 1354760..1355257 B 1 NC_031674.1 activating signal cointegrator 1 complex subunit 3 1355257 30034354 AWJ20_2442 Sugiyamaella lignohabitans activating signal cointegrator 1 complex subunit 3 XP_018737306.1 1354760 D 796027 CDS AWJ20_2443 30034355 1355476..1360569 B 1 NC_031674.1 Putative RNA helicase related to Ski2p; involved in translation inhibition of non-poly(A) mRNAs; required for repressing propagation of dsRNA viruses; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0042788 - polysomal ribosome [Evidence IDA] [PMID 21076151]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0008026 - ATP-dependent helicase activity [Evidence IEA]; GO_function: GO:0003724 - RNA helicase activity [Evidence ISS] [PMID 9133744]; GO_function: GO:0004386 - helicase activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0002181 - cytoplasmic translation [Evidence IGI] [PMID 21076151]; GO_process: GO:0051607 - defense response to virus [Evidence IEA]; GO_process: GO:0006417 - regulation of translation [Evidence IEA]; GO_process: GO:0006417 - regulation of translation [Evidence IGI,IMP] [PMID 10922069]; GO_process: GO:0006417 - regulation of translation [Evidence IGI,IMP] [PMID 11438647]; Slh1p 1360569 SLH1 30034355 SLH1 Sugiyamaella lignohabitans Slh1p XP_018737307.1 1355476 D 796027 CDS AWJ20_2444 30034356 1362015..1364837 B 1 NC_031674.1 EH domain-containing protein; involved in regulating phosphatidylinositol 4,5-bisphosphate levels and autophagy; Irs4p and Tax4p bind and activate the PtdIns phosphatase Inp51p; Irs4p and Tax4p are involved in localizing Atg17p to the PAS; IRS4 has a paralog, TAX4, that arose from the whole genome duplication; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0000407 - pre-autophagosomal structure [Evidence IDA] [PMID 18298591]; GO_function: GO:0005509 - calcium ion binding [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0032258 - CVT pathway [Evidence IGI] [PMID 18298591]; GO_process: GO:0006914 - autophagy [Evidence IGI] [PMID 18298591]; GO_process: GO:0009267 - cellular response to starvation [Evidence IGI] [PMID 18298591]; GO_process: GO:0000183 - chromatin silencing at rDNA [Evidence IMP] [PMID 10082585]; GO_process: GO:0031505 - fungal-type cell wall organization [Evidence IGI] [PMID 15265867]; GO_process: GO:0048017 - inositol lipid-mediated signaling [Evidence IGI] [PMID 15265867]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; Irs4p 1364837 IRS4 30034356 IRS4 Sugiyamaella lignohabitans Irs4p XP_018737308.1 1362015 D 796027 CDS AWJ20_2445 30034357 1365044..1367044 B 1 NC_031674.1 uncharacterized protein 1367044 30034357 AWJ20_2445 Sugiyamaella lignohabitans uncharacterized protein XP_018737309.1 1365044 D 796027 CDS AWJ20_2446 30034358 complement(1367279..1367593) B 1 NC_031674.1 uncharacterized protein 1367593 30034358 AWJ20_2446 Sugiyamaella lignohabitans uncharacterized protein XP_018737310.1 1367279 R 796027 CDS AWJ20_2447 30034359 1379655..1380344 B 1 NC_031674.1 uncharacterized protein 1380344 30034359 AWJ20_2447 Sugiyamaella lignohabitans uncharacterized protein XP_018737311.1 1379655 D 796027 CDS AWJ20_2448 30034360 1382538..1383812 B 1 NC_031674.1 S-adenosylmethionine decarboxylase; required for the biosynthesis of spermidine and spermine; cells lacking Spe2p require spermine or spermidine for growth in the presence of oxygen but not when grown anaerobically; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0004014 - adenosylmethionine decarboxylase activity [Evidence IEA,IEA]; GO_function: GO:0004014 - adenosylmethionine decarboxylase activity [Evidence IDA] [PMID 2266128]; GO_function: GO:0016831 - carboxy-lyase activity [Evidence IEA]; GO_function: GO:0016829 - lyase activity [Evidence IEA]; GO_process: GO:0006557 - S-adenosylmethioninamine biosynthetic process [Evidence IEA]; GO_process: GO:0015940 - pantothenate biosynthetic process [Evidence IMP] [PMID 11154694]; GO_process: GO:0006596 - polyamine biosynthetic process [Evidence IEA]; GO_process: GO:0008295 - spermidine biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0008295 - spermidine biosynthetic process [Evidence IMP] [PMID 7929015]; GO_process: GO:0006597 - spermine biosynthetic process [Evidence IEA]; GO_process: GO:0006597 - spermine biosynthetic process [Evidence IMP] [PMID 7929015]; adenosylmethionine decarboxylase SPE2 1383812 SPE2 30034360 SPE2 Sugiyamaella lignohabitans adenosylmethionine decarboxylase SPE2 XP_018737312.1 1382538 D 796027 CDS AWJ20_2449 30034361 1384879..1389171 B 1 NC_031674.1 RING domain E3 ubiquitin ligase; involved in ubiquitin-mediated degradation of non-stop proteins; component of ribosome-bound RQC (ribosome quality control) complex required for degradation of polypeptides arising from stalled translation; degrades products of mRNAs lacking a termination codon regardless of a poly(A) tail; functional connections to chromatin modification; homolog of mouse Listerin, mutations in which reported to cause neurodegeneration; GO_component: GO:1990112 - RQC complex [Evidence IDA] [PMID 23178123]; GO_component: GO:0022625 - cytosolic large ribosomal subunit [Evidence IDA] [PMID 23479637]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 17283062]; GO_component: GO:0005840 - ribosome [Evidence IDA] [PMID 16702403]; GO_component: GO:0005840 - ribosome [Evidence IDA] [PMID 20835226]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0043022 - ribosome binding [Evidence IDA] [PMID 20835226]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence IDA] [PMID 17283062]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0016568 - chromatin modification [Evidence IGI] [PMID 17283062]; GO_process: GO:0006348 - chromatin silencing at telomere [Evidence IMP] [PMID 17283062]; GO_process: GO:0010498 - proteasomal protein catabolic process [Evidence IGI,IMP] [PMID 24261871]; GO_process: GO:0016567 - protein ubiquitination [Evidence IEA]; GO_process: GO:0016567 - protein ubiquitination [Evidence IDA] [PMID 17283062]; GO_process: GO:0016567 - protein ubiquitination [Evidence IMP] [PMID 20835226]; GO_process: GO:1990116 - ribosome-associated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 23358411]; GO_process: GO:1990116 - ribosome-associated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 23479637]; GO_process: GO:0006511 - ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 20835226]; ubiquitin-protein ligase RKR1 1389171 RKR1 30034361 RKR1 Sugiyamaella lignohabitans ubiquitin-protein ligase RKR1 XP_018737313.1 1384879 D 796027 CDS AWJ20_2450 30034363 1389433..1390296 B 1 NC_031674.1 Mitochondrial ribosomal protein of the small subunit; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0005763 - mitochondrial small ribosomal subunit [Evidence IPI] [PMID 11278769]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA,IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence ISS] [PMID 9445368]; GO_function: GO:0019843 - rRNA binding [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IPI] [PMID 11278769]; GO_process: GO:0032543 - mitochondrial translation [Evidence IC] [PMID 11278769]; GO_process: GO:0006412 - translation [Evidence IEA]; mitochondrial 37S ribosomal protein MRPS28 1390296 MRPS28 30034363 MRPS28 Sugiyamaella lignohabitans mitochondrial 37S ribosomal protein MRPS28 XP_018737314.1 1389433 D 796027 CDS AWJ20_2451 30034364 complement(1390647..1392146) B 1 NC_031674.1 L-homoserine-O-acetyltransferase; catalyzes the conversion of homoserine to O-acetyl homoserine which is the first step of the methionine biosynthetic pathway; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_function: GO:0004414 - homoserine O-acetyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0004414 - homoserine O-acetyltransferase activity [Evidence IDA,IMP] [PMID 3301801]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016746 - transferase activity, transferring acyl groups [Evidence IEA]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0009092 - homoserine metabolic process [Evidence IDA,IMP] [PMID 3301801]; GO_process: GO:0009086 - methionine biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0009086 - methionine biosynthetic process [Evidence IMP] [PMID 6035500]; GO_process: GO:0000096 - sulfur amino acid metabolic process [Evidence IMP] [PMID 1101032]; homoserine O-acetyltransferase 1392146 MET2 30034364 MET2 Sugiyamaella lignohabitans homoserine O-acetyltransferase XP_018737315.1 1390647 R 796027 CDS AWJ20_2452 30034365 complement(1392417..1394504) B 1 NC_031674.1 Mitochondrial protein; forms a heterodimer complex with Mss1p that performs the 5-carboxymethylaminomethyl modification of the wobble uridine base in mitochondrial tRNAs; required for respiration in paromomycin-resistant 15S rRNA mutants; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 9774408]; GO_function: GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0070899 - mitochondrial tRNA wobble uridine modification [Evidence IMP] [PMID 15509579]; GO_process: GO:0008033 - tRNA processing [Evidence IEA,IEA]; GO_process: GO:0002098 - tRNA wobble uridine modification [Evidence IEA]; Mto1p 1394504 MTO1 30034365 MTO1 Sugiyamaella lignohabitans Mto1p XP_018737316.1 1392417 R 796027 CDS AWJ20_2453 30034366 1395456..1397246 B 1 NC_031674.1 ADP/ATP transporter; member of the Ca2+-binding subfamily of mitochondrial carriers, with two EF-hand motifs; transport activity of either Sal1p or Pet9p is critical for viability; polymorphic in different S. cerevisiae strains; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence ISS] [PMID 10930523]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0005471 - ATP:ADP antiporter activity [Evidence IMP] [PMID 18485069]; GO_function: GO:0005509 - calcium ion binding [Evidence IEA]; GO_function: GO:0005509 - calcium ion binding [Evidence IDA] [PMID 15238515]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_process: GO:0015866 - ADP transport [Evidence IMP] [PMID 18485069]; GO_process: GO:0015867 - ATP transport [Evidence IMP] [PMID 18485069]; GO_process: GO:0006839 - mitochondrial transport [Evidence IMP] [PMID 18485069]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Ca(2+)-binding ATP:ADP antiporter SAL1 1397246 SAL1 30034366 SAL1 Sugiyamaella lignohabitans Ca(2+)-binding ATP:ADP antiporter SAL1 XP_018737317.1 1395456 D 796027 CDS AWJ20_2454 30034367 1397938..1399485 B 1 NC_031674.1 Protein with a role in maintaining mitochondrial morphology; also involved in maintaining normal cardiolipin levels; mitochondrial inner membrane protein; proposed to be involved in N-acylethanolamine metabolism; related to mammalian N-acylPE-specific phospholipase D; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0031305 - integral component of mitochondrial inner membrane [Evidence IDA] [PMID 21306442]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0031966 - mitochondrial membrane [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0070290 - N-acylphosphatidylethanolamine-specific phospholipase D activity [Evidence IEA]; GO_function: GO:0070290 - N-acylphosphatidylethanolamine-specific phospholipase D activity [Evidence ISS] [PMID 15878693]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA,IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0070291 - N-acylethanolamine metabolic process [Evidence IMP] [PMID 15878693]; GO_process: GO:0070292 - N-acylphosphatidylethanolamine metabolic process [Evidence IMP] [PMID 15878693]; GO_process: GO:0016042 - lipid catabolic process [Evidence IEA]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0009395 - phospholipid catabolic process [Evidence IEA]; Fmp30p 1399485 FMP30 30034367 FMP30 Sugiyamaella lignohabitans Fmp30p XP_018737318.1 1397938 D 796027 CDS AWJ20_2455 30034368 complement(1400554..1401573) B 1 NC_031674.1 Ketopantoate hydroxymethyltransferase; required for pantothenic acid biosynthesis, converts 2-oxoisovalerate into 2-dehydropantoate; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 17054397]; GO_function: GO:0003864 - 3-methyl-2-oxobutanoate hydroxymethyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0003864 - 3-methyl-2-oxobutanoate hydroxymethyltransferase activity [Evidence IMP,ISS] [PMID 11154694]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0015940 - pantothenate biosynthetic process [Evidence IEA,IEA,IEA]; GO_process: GO:0015940 - pantothenate biosynthetic process [Evidence IMP] [PMID 11154694]; 3-methyl-2-oxobutanoate hydroxymethyltransferase 1401573 ECM31 30034368 ECM31 Sugiyamaella lignohabitans 3-methyl-2-oxobutanoate hydroxymethyltransferase XP_018737319.1 1400554 R 796027 CDS AWJ20_2456 30034369 1403089..1404405 B 1 NC_031674.1 Putative acyltransferase with similarity to Eeb1p and Eht1p; has a minor role in medium-chain fatty acid ethyl ester biosynthesis; may be involved in lipid metabolism and detoxification; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016746 - transferase activity, transferring acyl groups [Evidence ISS] [PMID 16361250]; GO_process: GO:0051792 - medium-chain fatty acid biosynthetic process [Evidence IGI] [PMID 16361250]; putative carboxylic ester hydrolase 1404405 30034369 AWJ20_2456 Sugiyamaella lignohabitans putative carboxylic ester hydrolase XP_018737320.1 1403089 D 796027 CDS AWJ20_2457 30034370 1404839..1405546 B 1 NC_031674.1 Accessory subunit of DNA polymerase zeta; involved in translesion synthesis during post-replication repair; required for mutagenesis induced by DNA damage; involved in double-strand break repair; forms a complex with Rev3p, Pol31p and Pol32p; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16452144]; GO_component: GO:0000790 - nuclear chromatin [Evidence IDA] [PMID 16546083]; GO_component: GO:0016035 - zeta DNA polymerase complex [Evidence IDA] [PMID 8658138]; GO_function: GO:0003887 - DNA-directed DNA polymerase activity [Evidence IDA] [PMID 8658138]; GO_process: GO:0006281 - DNA repair [Evidence IEA]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0070987 - error-free translesion synthesis [Evidence IDA] [PMID 12514101]; GO_process: GO:0042276 - error-prone translesion synthesis [Evidence IDA] [PMID 11313481]; GO_process: GO:0042276 - error-prone translesion synthesis [Evidence IMP] [PMID 3897795]; GO_process: GO:0042276 - error-prone translesion synthesis [Evidence IGI] [PMID 9765213]; Rev7p 1405546 REV7 30034370 REV7 Sugiyamaella lignohabitans Rev7p XP_018737321.1 1404839 D 796027 CDS AWJ20_2458 30034371 1407765..1408904 B 1 NC_031674.1 Fe(II)-dependent sulfonate/alpha-ketoglutarate dioxygenase; involved in sulfonate catabolism for use as a sulfur source; contains sequence that resembles a J domain (typified by the E. coli DnaJ protein); induced by sulphur starvation; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0051213 - dioxygenase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0000907 - sulfonate dioxygenase activity [Evidence IDA] [PMID 10482536]; GO_process: GO:0046306 - alkanesulfonate catabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0044273 - sulfur compound catabolic process [Evidence IMP] [PMID 10482536]; Jlp1p 1408904 JLP1 30034371 JLP1 Sugiyamaella lignohabitans Jlp1p XP_018737322.1 1407765 D 796027 CDS AWJ20_2459 30034372 1409793..1410911 B 1 NC_031674.1 Subunit of the trimeric GatFAB AmidoTransferase(AdT) complex; involved in the formation of Q-tRNAQ; required for remodeling of ER caused by Hmg2p overexpression; similar to bacterial GatA glutamyl-tRNA amidotransferase; GO_component: GO:0030956 - glutamyl-tRNA(Gln) amidotransferase complex [Evidence IEA]; GO_component: GO:0030956 - glutamyl-tRNA(Gln) amidotransferase complex [Evidence IDA] [PMID 19417106]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 11914276]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 19417106]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0016884 - carbon-nitrogen ligase activity, with glutamine as amido-N-donor [Evidence IEA,IEA]; GO_function: GO:0050567 - glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity [Evidence IEA,IEA]; GO_function: GO:0050567 - glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity [Evidence IDA] [PMID 19417106]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0007029 - endoplasmic reticulum organization [Evidence IGI] [PMID 18667535]; GO_process: GO:0070681 - glutaminyl-tRNAGln biosynthesis via transamidation [Evidence IEA]; GO_process: GO:0070681 - glutaminyl-tRNAGln biosynthesis via transamidation [Evidence IDA] [PMID 19417106]; GO_process: GO:0032543 - mitochondrial translation [Evidence IEA]; GO_process: GO:0006412 - translation [Evidence IEA,IEA]; glutamyl-tRNA(Gln) amidotransferase subunit HER2 1410911 HER2 30034372 HER2 Sugiyamaella lignohabitans glutamyl-tRNA(Gln) amidotransferase subunit HER2 XP_018737323.1 1409793 D 796027 CDS AWJ20_2460 30034374 complement(1411102..1412787) B 1 NC_031674.1 Protein that localizes to chromatin; has a role in regulation of histone gene expression; has a bromodomain-like region that interacts with the N-terminal tail of histone H3, and an ATPase domain; relocalizes to the cytosol in response to hypoxia; potentially phosphorylated by Cdc28p; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 22932476]; GO_component: GO:0042406 - extrinsic component of endoplasmic reticulum membrane [Evidence IDA] [PMID 19416104]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 19416104]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22932476]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0003682 - chromatin binding [Evidence IDA] [PMID 18493054]; GO_function: GO:0003682 - chromatin binding [Evidence IDA,IMP] [PMID 19581291]; GO_function: GO:0042393 - histone binding [Evidence IDA] [PMID 16079223]; GO_function: GO:0042393 - histone binding [Evidence IDA,IMP] [PMID 19581291]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0031936 - negative regulation of chromatin silencing [Evidence IMP] [PMID 15824130]; GO_process: GO:0031936 - negative regulation of chromatin silencing [Evidence IMP] [PMID 16079223]; GO_process: GO:0031936 - negative regulation of chromatin silencing [Evidence IMP] [PMID 19581291]; GO_process: GO:0000122 - negative regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 18493054]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 19683497]; Yta7p 1412787 YTA7 30034374 YTA7 Sugiyamaella lignohabitans Yta7p XP_018737324.1 1411102 R 796027 CDS AWJ20_2461 30034375 complement(1412844..1415582) B 1 NC_031674.1 Protein that localizes to chromatin; has a role in regulation of histone gene expression; has a bromodomain-like region that interacts with the N-terminal tail of histone H3, and an ATPase domain; relocalizes to the cytosol in response to hypoxia; potentially phosphorylated by Cdc28p; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 22932476]; GO_component: GO:0042406 - extrinsic component of endoplasmic reticulum membrane [Evidence IDA] [PMID 19416104]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 19416104]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22932476]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0003682 - chromatin binding [Evidence IDA] [PMID 18493054]; GO_function: GO:0003682 - chromatin binding [Evidence IDA,IMP] [PMID 19581291]; GO_function: GO:0042393 - histone binding [Evidence IDA] [PMID 16079223]; GO_function: GO:0042393 - histone binding [Evidence IDA,IMP] [PMID 19581291]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0031936 - negative regulation of chromatin silencing [Evidence IMP] [PMID 15824130]; GO_process: GO:0031936 - negative regulation of chromatin silencing [Evidence IMP] [PMID 16079223]; GO_process: GO:0031936 - negative regulation of chromatin silencing [Evidence IMP] [PMID 19581291]; GO_process: GO:0000122 - negative regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 18493054]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 19683497]; Yta7p 1415582 YTA7 30034375 YTA7 Sugiyamaella lignohabitans Yta7p XP_018737325.1 1412844 R 796027 CDS AWJ20_2462 30034376 1416804..1418765 B 1 NC_031674.1 Signal recognition particle (SRP) receptor alpha subunit; contain GTPase domains; involved in SRP-dependent protein targeting; interacts with the beta subunit, Srp102p; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IDA] [PMID 9679135]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005785 - signal recognition particle receptor complex [Evidence IPI] [PMID 9679135]; GO_function: GO:0005525 - GTP binding [Evidence IEA,IEA]; GO_function: GO:0005525 - GTP binding [Evidence IPI] [PMID 7844142]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_function: GO:0005047 - signal recognition particle binding [Evidence IMP,ISS] [PMID 1327299]; GO_process: GO:0006614 - SRP-dependent cotranslational protein targeting to membrane [Evidence IEA]; GO_process: GO:0006614 - SRP-dependent cotranslational protein targeting to membrane [Evidence IC,TAS] [PMID 7844142]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0045047 - protein targeting to ER [Evidence IMP] [PMID 1327299]; GO_process: GO:0006810 - transport [Evidence IEA]; Signal recognition particle receptor subunit alpha 1418765 SRP101 30034376 SRP101 Sugiyamaella lignohabitans Signal recognition particle receptor subunit alpha XP_018737326.1 1416804 D 796027 CDS AWJ20_2463 30034377 complement(1419680..1420495) B 1 NC_031674.1 Sterol binding protein involved in the export of acetylated sterols; secreted glycoprotein and member of the CAP protein superfamily (cysteine-rich secretory proteins (CRISP), antigen 5, and pathogenesis related 1 proteins); sterol export function is redundant with that of PRY1; may be involved in detoxification of hydrophobic compounds; PRY2 has a paralog, PRY1, that arose from the whole genome duplication; GO_component: GO:0005576 - extracellular region [Evidence IEA,IEA,IEA]; GO_component: GO:0005576 - extracellular region [Evidence IDA] [PMID 11935221]; GO_component: GO:0000324 - fungal-type vacuole [Evidence IDA] [PMID 14562095]; GO_function: GO:0008289 - lipid binding [Evidence IEA]; GO_function: GO:0032934 - sterol binding [Evidence IDA] [PMID 23027975]; GO_process: GO:0006869 - lipid transport [Evidence IEA]; GO_process: GO:0015918 - sterol transport [Evidence IGI,IMP] [PMID 23027975]; GO_process: GO:0006810 - transport [Evidence IEA]; Pry2p 1420495 PRY2 30034377 PRY2 Sugiyamaella lignohabitans Pry2p XP_018737327.1 1419680 R 796027 CDS AWJ20_2464 30034378 complement(1427284..1428051) B 1 NC_031674.1 Rab family GTPase; involved in the ER-to-Golgi step of the secretory pathway; complex formation with the Rab escort protein Mrs6p is required for prenylation of Ypt1p by protein geranylgeranyltransferase type II (Bet2p-Bet4p); binds to unspliced HAC1 mRNA; regulates unfolded protein response (UPR) by promoting the decay of HAC1 RNA; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA]; GO_component: GO:0000139 - Golgi membrane [Evidence IDA] [PMID 10747087]; GO_component: GO:0005795 - Golgi stack [Evidence IDA] [PMID 12802060]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0031410 - cytoplasmic vesicle [Evidence IDA] [PMID 23129774]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IDA] [PMID 10747087]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0000407 - pre-autophagosomal structure [Evidence IDA] [PMID 20375281]; GO_component: GO:0005802 - trans-Golgi network [Evidence IDA] [PMID 20059749]; GO_function: GO:0005525 - GTP binding [Evidence IEA,IEA]; GO_function: GO:0003924 - GTPase activity [Evidence IDA] [PMID 3311726]; GO_function: GO:0003924 - GTPase activity [Evidence IDA] [PMID 9447979]; GO_function: GO:0000149 - SNARE binding [Evidence IDA,IPI] [PMID 18388317]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0090114 - COPII-coated vesicle budding [Evidence IMP] [PMID 15689495]; GO_process: GO:0032258 - CVT pathway [Evidence IMP] [PMID 20375281]; GO_process: GO:0006888 - ER to Golgi vesicle-mediated transport [Evidence IMP] [PMID 15689495]; GO_process: GO:0006888 - ER to Golgi vesicle-mediated transport [Evidence IMP] [PMID 2504726]; GO_process: GO:0006888 - ER to Golgi vesicle-mediated transport [Evidence IMP] [PMID 7593181]; GO_process: GO:0048194 - Golgi vesicle budding [Evidence IGI] [PMID 18388317]; GO_process: GO:0048211 - Golgi vesicle docking [Evidence IMP] [PMID 9545229]; GO_process: GO:0035494 - SNARE complex disassembly [Evidence IMP] [PMID 9157884]; GO_process: GO:0034498 - early endosome to Golgi transport [Evidence IMP] [PMID 20059749]; GO_process: GO:0032456 - endocytic recycling [Evidence IMP] [PMID 20059749]; GO_process: GO:0016236 - macroautophagy [Evidence IMP] [PMID 20375281]; GO_process: GO:1990261 - pre-mRNA catabolic process [Evidence IMP] [PMID 22844259]; GO_process: GO:0006461 - protein complex assembly [Evidence IDA] [PMID 8603910]; GO_process: GO:0015031 - protein transport [Evidence IEA,IEA]; GO_process: GO:1900101 - regulation of endoplasmic reticulum unfolded protein response [Evidence IMP] [PMID 22844259]; GO_process: GO:0006890 - retrograde vesicle-mediated transport, Golgi to ER [Evidence IGI,IMP] [PMID 18388317]; GO_process: GO:0007264 - small GTPase mediated signal transduction [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IEA]; Rab family GTPase YPT1 1428051 YPT1 30034378 YPT1 Sugiyamaella lignohabitans Rab family GTPase YPT1 XP_018737328.1 1427284 R 796027 CDS AWJ20_2465 30034379 1430198..1431658 B 1 NC_031674.1 Subunit of the G protein involved in pheromone response; GTP-binding alpha subunit of the heterotrimeric G protein; negatively regulates the mating pathway by sequestering G(beta)gamma and by triggering an adaptive response; activates Vps34p at the endosome; protein abundance increases in response to DNA replication stress; GO_component: GO:0005768 - endosome [Evidence IEA]; GO_component: GO:0005768 - endosome [Evidence IDA] [PMID 16839886]; GO_component: GO:0010008 - endosome membrane [Evidence IEA]; GO_component: GO:0031234 - extrinsic component of cytoplasmic side of plasma membrane [Evidence IBA]; GO_component: GO:0005834 - heterotrimeric G-protein complex [Evidence IDA,IPI] [PMID 11394869]; GO_component: GO:0005834 - heterotrimeric G-protein complex [Evidence IMP] [PMID 2105453]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 8756677]; GO_function: GO:0031683 - G-protein beta/gamma-subunit complex binding [Evidence IBA,IEA]; GO_function: GO:0001664 - G-protein coupled receptor binding [Evidence IBA,IEA]; GO_function: GO:0005525 - GTP binding [Evidence IEA,IEA]; GO_function: GO:0003924 - GTPase activity [Evidence IEA]; GO_function: GO:0003924 - GTPase activity [Evidence IDA] [PMID 11394869]; GO_function: GO:0003924 - GTPase activity [Evidence IMP] [PMID 1900495]; GO_function: GO:0019001 - guanyl nucleotide binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0004871 - signal transducer activity [Evidence IBA,IEA,IEA]; GO_process: GO:0007186 - G-protein coupled receptor signaling pathway [Evidence IEA]; GO_process: GO:0006184 - GTP catabolic process [Evidence IEA]; GO_process: GO:0000754 - adaptation of signaling pathway by response to pheromone involved in conjugation with cellular fusion [Evidence IMP] [PMID 12556475]; GO_process: GO:0000754 - adaptation of signaling pathway by response to pheromone involved in conjugation with cellular fusion [Evidence IMP] [PMID 2105453]; GO_process: GO:0007189 - adenylate cyclase-activating G-protein coupled receptor signaling pathway [Evidence IBA,IEA]; GO_process: GO:0031684 - heterotrimeric G-protein complex cycle [Evidence IMP] [PMID 2107073]; GO_process: GO:0048017 - inositol lipid-mediated signaling [Evidence IMP] [PMID 16839886]; GO_process: GO:0000742 - karyogamy involved in conjugation with cellular fusion [Evidence IMP] [PMID 19386762]; GO_process: GO:0000743 - nuclear migration involved in conjugation with cellular fusion [Evidence IMP] [PMID 19386762]; GO_process: GO:0000750 - pheromone-dependent signal transduction involved in conjugation with cellular fusion [Evidence IMP] [PMID 3113739]; GO_process: GO:0071701 - regulation of MAPK export from nucleus [Evidence IMP] [PMID 12556475]; GO_process: GO:0019236 - response to pheromone [Evidence IEA]; GO_process: GO:0007165 - signal transduction [Evidence IEA,IEA]; guanine nucleotide-binding protein subunit alpha 1431658 GPA2 30034379 GPA2 Sugiyamaella lignohabitans guanine nucleotide-binding protein subunit alpha XP_018737329.1 1430198 D 796027 CDS AWJ20_2466 30034380 complement(1431905..1433332) B 1 NC_031674.1 Arf family guanine nucleotide exchange factor SEC7 1433332 SEC7 30034380 SEC7 Sugiyamaella lignohabitans Arf family guanine nucleotide exchange factor SEC7 XP_018737330.1 1431905 R 796027 CDS AWJ20_2467 30034381 complement(1433472..1436852) B 1 NC_031674.1 Arf family guanine nucleotide exchange factor SEC7 1436852 SEC7 30034381 SEC7 Sugiyamaella lignohabitans Arf family guanine nucleotide exchange factor SEC7 XP_018737331.1 1433472 R 796027 CDS AWJ20_2468 30034382 1438640..1441702 B 1 NC_031674.1 Outward-rectifier potassium channel of the plasma membrane; has two pore domains in tandem, each of which forms a functional channel permeable to potassium; carboxy tail functions to prevent inner gate closures; target of K1 toxin; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA,IMP] [PMID 7651518]; GO_function: GO:0005267 - potassium channel activity [Evidence IEA]; GO_function: GO:0005267 - potassium channel activity [Evidence IDA,IMP,ISS] [PMID 7651518]; GO_function: GO:0005244 - voltage-gated ion channel activity [Evidence IEA]; GO_function: GO:0005249 - voltage-gated potassium channel activity [Evidence IMP] [PMID 16133265]; GO_process: GO:0030007 - cellular potassium ion homeostasis [Evidence IDA,IMP] [PMID 7651518]; GO_process: GO:0006811 - ion transport [Evidence IEA]; GO_process: GO:0071805 - potassium ion transmembrane transport [Evidence IEA]; GO_process: GO:0034765 - regulation of ion transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Tok1p 1441702 TOK1 30034382 TOK1 Sugiyamaella lignohabitans Tok1p XP_018737332.1 1438640 D 796027 CDS AWJ20_2469 30034383 complement(1443073..1443891) B 1 NC_031674.1 Iron-sulfur protein subunit of succinate dehydrogenase; the complex couples the oxidation of succinate to the transfer of electrons to ubiquinone as part of the TCA cycle and the mitochondrial respiratory chain; other members are Sdh1p, Sdh3p, and Sdh4p; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 23509072]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0031966 - mitochondrial membrane [Evidence IDA] [PMID 1939170]; GO_component: GO:0005749 - mitochondrial respiratory chain complex II [Evidence IDA] [PMID 9822678]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0051537 - 2 iron, 2 sulfur cluster binding [Evidence IEA,IEA]; GO_function: GO:0051538 - 3 iron, 4 sulfur cluster binding [Evidence IEA]; GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO_function: GO:0009055 - electron carrier activity [Evidence IEA]; GO_function: GO:0051536 - iron-sulfur cluster binding [Evidence IEA,IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0008177 - succinate dehydrogenase (ubiquinone) activity [Evidence IEA]; GO_function: GO:0008177 - succinate dehydrogenase (ubiquinone) activity [Evidence IDA] [PMID 13445213]; GO_function: GO:0008177 - succinate dehydrogenase (ubiquinone) activity [Evidence IGI,IMP] [PMID 16232921]; GO_process: GO:0045333 - cellular respiration [Evidence IGI,IMP] [PMID 16232921]; GO_process: GO:0006121 - mitochondrial electron transport, succinate to ubiquinone [Evidence TAS] [PMID 9929002]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0006099 - tricarboxylic acid cycle [Evidence IEA,IEA,IEA]; GO_process: GO:0006099 - tricarboxylic acid cycle [Evidence IMP] [PMID 10224250]; succinate dehydrogenase iron-sulfur protein subunit SDH2 1443891 SDH2 30034383 SDH2 Sugiyamaella lignohabitans succinate dehydrogenase iron-sulfur protein subunit SDH2 XP_018737333.1 1443073 R 796027 CDS AWJ20_2470 30034385 1449040..1449765 B 1 NC_031674.1 Ubiquitin C-terminal hydrolase; cleaves ubiquitin-protein fusions to generate monomeric ubiquitin; hydrolyzes the peptide bond at the C-terminus of ubiquitin; also the major processing enzyme for the ubiquitin-like protein Rub1p; GO_component: GO:0005737 - cytoplasm [Evidence IC] [PMID 1429680]; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_function: GO:0008234 - cysteine-type peptidase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_function: GO:0004843 - ubiquitin-specific protease activity [Evidence IEA]; GO_function: GO:0004843 - ubiquitin-specific protease activity [Evidence IDA] [PMID 1429680]; GO_process: GO:0006508 - proteolysis [Evidence IEA]; GO_process: GO:0010992 - ubiquitin homeostasis [Evidence IC] [PMID 1429680]; GO_process: GO:0006511 - ubiquitin-dependent protein catabolic process [Evidence IEA]; Yuh1p 1449765 YUH1 30034385 YUH1 Sugiyamaella lignohabitans Yuh1p XP_018737334.1 1449040 D 796027 CDS AWJ20_2471 30034386 complement(1449968..1451440) B 1 NC_031674.1 Protein that may have a role in transcription elongation; forms a complex with Csn12p that is recruited to transcribed genes; possibly involved in splicing based on pre-mRNA accumulation defect for many intron-containing genes; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0035327 - transcriptionally active chromatin [Evidence IDA] [PMID 21149575]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0000398 - mRNA splicing, via spliceosome [Evidence IMP] [PMID 19061648]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Thp3p 1451440 THP3 30034386 THP3 Sugiyamaella lignohabitans Thp3p XP_018737335.1 1449968 R 796027 CDS AWJ20_2472 30034387 1452990..1454114 B 1 NC_031674.1 L-asparaginase (predicted) 1454114 30034387 AWJ20_2472 Sugiyamaella lignohabitans L-asparaginase (predicted) XP_018737336.1 1452990 D 796027 CDS AWJ20_2473 30034388 1455254..1456816 B 1 NC_031674.1 putative protein kinase YPK3 1456816 YPK3 30034388 YPK3 Sugiyamaella lignohabitans putative protein kinase YPK3 XP_018737337.1 1455254 D 796027 CDS AWJ20_2474 30034389 1457873..1460890 B 1 NC_031674.1 transcription factor TFIIIC subunit TFC4 1460890 TFC4 30034389 TFC4 Sugiyamaella lignohabitans transcription factor TFIIIC subunit TFC4 XP_018737338.1 1457873 D 796027 CDS AWJ20_2475 30034390 1461845..1462726 B 1 NC_031674.1 Spermidine synthase; involved in biosynthesis of spermidine and also in biosynthesis of pantothenic acid; spermidine is required for growth of wild-type cells; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0004766 - spermidine synthase activity [Evidence IEA]; GO_function: GO:0004766 - spermidine synthase activity [Evidence IMP,ISS] [PMID 9073064]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0015940 - pantothenate biosynthetic process [Evidence IMP] [PMID 11154694]; GO_process: GO:0006596 - polyamine biosynthetic process [Evidence IEA]; GO_process: GO:0008295 - spermidine biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0008295 - spermidine biosynthetic process [Evidence IMP] [PMID 9073064]; spermidine synthase 1462726 SPE3 30034390 SPE3 Sugiyamaella lignohabitans spermidine synthase XP_018737339.1 1461845 D 796027 CDS AWJ20_2476 30034391 1463381..1463761 B 1 NC_031674.1 kinetochore protein Mis18 1463761 mis18 30034391 mis18 Sugiyamaella lignohabitans kinetochore protein Mis18 XP_018737340.1 1463381 D 796027 CDS AWJ20_2477 30034392 complement(1464622..1464918) B 1 NC_031674.1 Protein required for pre-rRNA processing; also required for 40S ribosomal subunit assembly; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 15078877]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 15178413]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0000462 - maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 15078877]; GO_process: GO:0000462 - maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 15178413]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; Faf1p 1464918 FAF1 30034392 FAF1 Sugiyamaella lignohabitans Faf1p XP_018737341.1 1464622 R 796027 CDS AWJ20_2478 30034393 1466907..1468100 B 1 NC_031674.1 E1 alpha subunit of the pyruvate dehydrogenase (PDH) complex; catalyzes the direct oxidative decarboxylation of pyruvate to acetyl-CoA; phosphorylated; regulated by glucose; GO_component: GO:0043231 - intracellular membrane-bounded organelle [Evidence IEA]; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA]; GO_component: GO:0042645 - mitochondrial nucleoid [Evidence IDA] [PMID 15692048]; GO_component: GO:0005967 - mitochondrial pyruvate dehydrogenase complex [Evidence IDA] [PMID 2007123]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 7589446]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0016624 - oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor [Evidence IEA]; GO_function: GO:0004739 - pyruvate dehydrogenase (acetyl-transferring) activity [Evidence IEA,IEA]; GO_function: GO:0004739 - pyruvate dehydrogenase (acetyl-transferring) activity [Evidence IMP] [PMID 11589696]; GO_process: GO:0006086 - acetyl-CoA biosynthetic process from pyruvate [Evidence IDA] [PMID 7947791]; GO_process: GO:0006096 - glycolytic process [Evidence IEA,IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0007124 - pseudohyphal growth [Evidence IMP] [PMID 24603354]; pyruvate dehydrogenase (acetyl-transferring) subunit E1 alpha 1468100 PDA1 30034393 PDA1 Sugiyamaella lignohabitans pyruvate dehydrogenase (acetyl-transferring) subunit E1 alpha XP_018737342.1 1466907 D 796027 CDS AWJ20_2479 30034394 1472024..1472515 B 1 NC_031674.1 GTP-binding protein; regulates nitrogen starvation response, sporulation, and filamentous growth; farnesylation and palmitoylation required for activity and localization to plasma membrane; homolog of mammalian Ras proto-oncogenes; RAS2 has a paralog, RAS1, that arose from the whole genome duplication; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IDA] [PMID 22575457]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 22575457]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 23127800]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 11914276]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 16622836]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 20162532]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 23127800]; GO_function: GO:0005525 - GTP binding [Evidence IEA,IEA]; GO_function: GO:0005525 - GTP binding [Evidence IDA] [PMID 6438624]; GO_function: GO:0003924 - GTPase activity [Evidence IDA] [PMID 8106517]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006184 - GTP catabolic process [Evidence IEA]; GO_process: GO:0007190 - activation of adenylate cyclase activity [Evidence IDA] [PMID 8106517]; GO_process: GO:0030437 - ascospore formation [Evidence IMP] [PMID 2558958]; GO_process: GO:0045762 - positive regulation of adenylate cyclase activity [Evidence IGI] [PMID 2981630]; GO_process: GO:0045762 - positive regulation of adenylate cyclase activity [Evidence IGI] [PMID 3891097]; GO_process: GO:0000411 - positive regulation of transcription by galactose [Evidence IMP] [PMID 16292676]; GO_process: GO:0097271 - protein localization to bud neck [Evidence IGI] [PMID 12782684]; GO_process: GO:0007124 - pseudohyphal growth [Evidence IMP] [PMID 1547504]; GO_process: GO:0032880 - regulation of protein localization [Evidence IMP] [PMID 15917658]; GO_process: GO:0001302 - replicative cell aging [Evidence IMP] [PMID 12839995]; GO_process: GO:0001302 - replicative cell aging [Evidence IMP] [PMID 8034612]; GO_process: GO:0007165 - signal transduction [Evidence IEA]; GO_process: GO:0007264 - small GTPase mediated signal transduction [Evidence IEA]; Ras family GTPase RAS2 1472515 RAS2 30034394 RAS2 Sugiyamaella lignohabitans Ras family GTPase RAS2 XP_018737343.1 1472024 D 796027 CDS AWJ20_2480 30034396 1474040..1476277 B 1 NC_031674.1 Subunit of vacuolar transporter chaperone (VTC) complex; involved in membrane trafficking, vacuolar polyphosphate accumulation, microautophagy and non-autophagic vacuolar fusion; VTC2 has a paralog, VTC3, that arose from the whole genome duplication; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 17079729]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 11823419]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0033254 - vacuolar transporter chaperone complex [Evidence IPI] [PMID 11823419]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0016237 - microautophagy [Evidence IDA,IMP] [PMID 17079729]; GO_process: GO:0006797 - polyphosphate metabolic process [Evidence IGI,IMP] [PMID 11102525]; GO_process: GO:0008104 - protein localization [Evidence IMP] [PMID 10480897]; GO_process: GO:0007034 - vacuolar transport [Evidence IDA,IMP] [PMID 17079729]; GO_process: GO:0042144 - vacuole fusion, non-autophagic [Evidence IMP,IPI] [PMID 11823419]; Vtc2p 1476277 VTC2 30034396 VTC2 Sugiyamaella lignohabitans Vtc2p XP_018737344.1 1474040 D 796027 CDS AWJ20_2481 30034397 complement(1477388..1479493) B 1 NC_031674.1 phosphatidylinositol-3-phosphate-binding protein BEM1 1479493 BEM1 30034397 BEM1 Sugiyamaella lignohabitans phosphatidylinositol-3-phosphate-binding protein BEM1 XP_018737345.1 1477388 R 796027 CDS AWJ20_2482 30034398 1482168..1483235 B 1 NC_031674.1 Bisphosphate-3'-nucleotidase; involved in salt tolerance and methionine biogenesis; dephosphorylates 3'-phosphoadenosine-5'-phosphate and 3'-phosphoadenosine-5'-phosphosulfate, intermediates of the sulfate assimilation pathway; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0008441 - 3'(2'),5'-bisphosphate nucleotidase activity [Evidence IEA,IEA]; GO_function: GO:0008441 - 3'(2'),5'-bisphosphate nucleotidase activity [Evidence IDA] [PMID 7809627]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_process: GO:0016311 - dephosphorylation [Evidence IEA,IEA]; GO_process: GO:0042538 - hyperosmotic salinity response [Evidence IMP] [PMID 8393782]; GO_process: GO:0009086 - methionine biosynthetic process [Evidence IMP] [PMID 8393782]; GO_process: GO:0046854 - phosphatidylinositol phosphorylation [Evidence IEA]; GO_process: GO:0006950 - response to stress [Evidence IEA]; GO_process: GO:0000103 - sulfate assimilation [Evidence IMP] [PMID 8910555]; GO_process: GO:0006790 - sulfur compound metabolic process [Evidence IEA]; Met22p 1483235 MET22 30034398 MET22 Sugiyamaella lignohabitans Met22p XP_018737346.1 1482168 D 796027 CDS AWJ20_2483 30034399 complement(1495183..1496370) B 1 NC_031674.1 Alpha-1,2-mannosyltransferase; involved in O- and N-linked protein glycosylation; type II membrane protein; member of the KRE2/MNT1 mannosyltransferase family; relocalizes from vacuole to cytoplasm upon DNA replication stress; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0005794 - Golgi apparatus [Evidence IDA] [PMID 8631921]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 22842922]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_function: GO:0000026 - alpha-1,2-mannosyltransferase activity [Evidence IDA] [PMID 9020857]; GO_function: GO:0000026 - alpha-1,2-mannosyltransferase activity [Evidence IMP] [PMID 9182588]; GO_function: GO:0000030 - mannosyltransferase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA]; GO_process: GO:0097502 - mannosylation [Evidence IEA]; GO_process: GO:0006487 - protein N-linked glycosylation [Evidence IGI] [PMID 9182588]; GO_process: GO:0006493 - protein O-linked glycosylation [Evidence IGI] [PMID 9182588]; GO_process: GO:0006486 - protein glycosylation [Evidence IEA,IEA]; alpha-1,2-mannosyltransferase KTR1 1496370 KTR1 30034399 KTR1 Sugiyamaella lignohabitans alpha-1,2-mannosyltransferase KTR1 XP_018737347.1 1495183 R 796027 CDS AWJ20_2484 30034400 1498471..1500624 B 1 NC_031674.1 Alpha 1,3 glucosyltransferase; involved in transfer of oligosaccharides from dolichyl pyrophosphate to asparagine residues of proteins during N-linked protein glycosylation; mutations in human ortholog are associated with disease; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IMP] [PMID 8877369]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0042281 - dolichyl pyrophosphate Man9GlcNAc2 alpha-1,3-glucosyltransferase activity [Evidence IMP] [PMID 10336995]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA]; GO_function: GO:0016758 - transferase activity, transferring hexosyl groups [Evidence IEA]; GO_function: GO:0016758 - transferase activity, transferring hexosyl groups [Evidence IMP] [PMID 8877369]; GO_process: GO:0009060 - aerobic respiration [Evidence IMP] [PMID 15794922]; GO_process: GO:0006490 - oligosaccharide-lipid intermediate biosynthetic process [Evidence IMP] [PMID 10336995]; GO_process: GO:0006486 - protein glycosylation [Evidence IEA]; GO_process: GO:0006486 - protein glycosylation [Evidence IMP] [PMID 8877369]; dolichyl-P-Glc:Man(9)GlcNAc(2)-PP-dolichol alpha-1,3-glucosyltransferase 1500624 ALG6 30034400 ALG6 Sugiyamaella lignohabitans dolichyl-P-Glc:Man(9)GlcNAc(2)-PP-dolichol alpha-1,3-glucosyltransferase XP_018737348.1 1498471 D 796027 CDS AWJ20_2485 30034401 complement(1501294..1502202) B 1 NC_031674.1 Cell wall endo-beta-1,3-glucanase 1502202 30034401 AWJ20_2485 Sugiyamaella lignohabitans Cell wall endo-beta-1,3-glucanase XP_018737349.1 1501294 R 796027 CDS AWJ20_2486 30034402 complement(1503425..1503946) B 1 NC_031674.1 Cell wall endo-beta-1,3-glucanase 1503946 30034402 AWJ20_2486 Sugiyamaella lignohabitans Cell wall endo-beta-1,3-glucanase XP_018737350.1 1503425 R 796027 CDS AWJ20_2487 30034403 1506338..1507327 B 1 NC_031674.1 Protein required for membrane insertion of C-terminus of Cox2p; mitochondrial integral inner membrane protein; interacts genetically and physically with Mss2p and Pnt1p; similar to S. cerevisiae Oxa1, N. crassa Oxa2p, and E. coli YidC; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0031305 - integral component of mitochondrial inner membrane [Evidence IDA] [PMID 11950926]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_function: GO:0032977 - membrane insertase activity [Evidence IMP,ISS] [PMID 11950926]; GO_function: GO:0032977 - membrane insertase activity [Evidence IPI] [PMID 17452441]; GO_function: GO:0032977 - membrane insertase activity [Evidence IGI] [PMID 17922846]; GO_process: GO:0051205 - protein insertion into membrane [Evidence IEA]; GO_process: GO:0032979 - protein insertion into mitochondrial membrane from inner side [Evidence IGI,IMP] [PMID 11950926]; GO_process: GO:0032979 - protein insertion into mitochondrial membrane from inner side [Evidence IPI] [PMID 17452441]; GO_process: GO:0032979 - protein insertion into mitochondrial membrane from inner side [Evidence IGI] [PMID 17922846]; Cox18p 1507327 COX18 30034403 COX18 Sugiyamaella lignohabitans Cox18p XP_018737351.1 1506338 D 796027 CDS AWJ20_2488 30034404 complement(1508579..1511878) B 1 NC_031674.1 uncharacterized protein 1511878 30034404 AWJ20_2488 Sugiyamaella lignohabitans uncharacterized protein XP_018737352.1 1508579 R 796027 CDS AWJ20_2489 30034405 complement(1512281..1515016) B 1 NC_031674.1 Type II myosin heavy chain; required for wild-type cytokinesis and cell separation; localizes to the actomyosin ring; binds to myosin light chains Mlc1p and Mlc2p through its IQ1 and IQ2 motifs respectively; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 9442111]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 9732290]; GO_component: GO:0000142 - cellular bud neck contractile ring [Evidence IDA] [PMID 9442111]; GO_component: GO:0000142 - cellular bud neck contractile ring [Evidence IDA] [PMID 9732290]; GO_component: GO:0000131 - incipient cellular bud site [Evidence IDA] [PMID 9732290]; GO_component: GO:0016460 - myosin II complex [Evidence IPI] [PMID 15210731]; GO_component: GO:0016459 - myosin complex [Evidence IEA,IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0003779 - actin binding [Evidence IEA]; GO_function: GO:0000146 - microfilament motor activity [Evidence ISS] [PMID 9519900]; GO_function: GO:0003774 - motor activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0000915 - actomyosin contractile ring assembly [Evidence IMP] [PMID 9732290]; GO_process: GO:0000916 - actomyosin contractile ring contraction [Evidence IMP] [PMID 16148042]; GO_process: GO:0000916 - actomyosin contractile ring contraction [Evidence IEP] [PMID 9442111]; GO_process: GO:0000916 - actomyosin contractile ring contraction [Evidence IEP] [PMID 9732290]; GO_process: GO:0007109 - cytokinesis, completion of separation [Evidence IMP] [PMID 12589071]; GO_process: GO:0007109 - cytokinesis, completion of separation [Evidence IMP] [PMID 3322809]; GO_process: GO:0007109 - cytokinesis, completion of separation [Evidence IMP] [PMID 9732290]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; myosin 1 1515016 MYO1 30034405 MYO1 Sugiyamaella lignohabitans myosin 1 XP_018737353.1 1512281 R 796027 CDS AWJ20_2490 30034407 complement(1515055..1515438) B 1 NC_031674.1 uncharacterized protein 1515438 30034407 AWJ20_2490 Sugiyamaella lignohabitans uncharacterized protein XP_018737354.1 1515055 R 796027 CDS AWJ20_2491 30034408 complement(1515724..1516782) B 1 NC_031674.1 Homoserine kinase; conserved protein required for threonine biosynthesis; expression is regulated by the GCN4-mediated general amino acid control pathway; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004413 - homoserine kinase activity [Evidence IEA,IEA]; GO_function: GO:0004413 - homoserine kinase activity [Evidence IDA] [PMID 2165904]; GO_function: GO:0004413 - homoserine kinase activity [Evidence ISS] [PMID 8973190]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0009092 - homoserine metabolic process [Evidence IDA] [PMID 2165904]; GO_process: GO:0006549 - isoleucine metabolic process [Evidence TAS] [PMID 8973190]; GO_process: GO:0006555 - methionine metabolic process [Evidence TAS] [PMID 8973190]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; GO_process: GO:0009088 - threonine biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0009088 - threonine biosynthetic process [Evidence IMP] [PMID 17247984]; GO_process: GO:0006566 - threonine metabolic process [Evidence IEA]; homoserine kinase 1516782 THR1 30034408 THR1 Sugiyamaella lignohabitans homoserine kinase XP_018737355.1 1515724 R 796027 CDS AWJ20_2492 30034409 1517357..1518853 B 1 NC_031674.1 Larger subunit of the mitochondrial processing protease (MPP); essential processing enzyme that cleaves the N-terminal targeting sequences from mitochondrially imported proteins; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA]; GO_component: GO:0017087 - mitochondrial processing peptidase complex [Evidence IDA] [PMID 2905264]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004222 - metalloendopeptidase activity [Evidence IEA]; GO_function: GO:0004222 - metalloendopeptidase activity [Evidence IDA] [PMID 2905264]; GO_function: GO:0008237 - metallopeptidase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_process: GO:0006627 - protein processing involved in protein targeting to mitochondrion [Evidence IMP] [PMID 3061808]; GO_process: GO:0006508 - proteolysis [Evidence IEA,IEA]; Mas2p 1518853 MAS2 30034409 MAS2 Sugiyamaella lignohabitans Mas2p XP_018737356.1 1517357 D 796027 CDS AWJ20_2493 30034410 complement(1519095..1519925) B 1 NC_031674.1 Sec63 complex subunit SEC62 1519925 SEC62 30034410 SEC62 Sugiyamaella lignohabitans Sec63 complex subunit SEC62 XP_018737357.1 1519095 R 796027 CDS AWJ20_2494 30034411 1521589..1522197 B 1 NC_031674.1 hypothetical protein; GFP-fusion protein is induced in response to the DNA-damaging agent MMS; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0006950 - response to stress [Evidence IEA]; Fmp41p 1522197 FMP41 30034411 FMP41 Sugiyamaella lignohabitans Fmp41p XP_018737358.1 1521589 D 796027 CDS AWJ20_2495 30034412 1522627..1526640 B 1 NC_031674.1 Subunit of the SEA (Seh1-associated) complex; SEA is a coatomer-related complex that associates dynamically with the vacuole; has N-terminal WD-40 repeats and a C-terminal RING motif; mtc5 is synthetically sick with cdc13-1; relative distribution to vacuolar membrane punctae decreases upon DNA replication stress; GO_component: GO:0035859 - Seh1-associated complex [Evidence IDA] [PMID 21454883]; GO_component: GO:0097042 - extrinsic component of fungal-type vacuolar membrane [Evidence IDA] [PMID 21454883]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 14562095]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 22842922]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Mtc5p 1526640 MTC5 30034412 MTC5 Sugiyamaella lignohabitans Mtc5p XP_018737359.1 1522627 D 796027 CDS AWJ20_2496 30034413 1526854..1529943 B 1 NC_031674.1 TFIID subunit, involved in RNA pol II transcription initiation; possesses in vitro histone acetyltransferase activity but its role in vivo appears to be minor; involved in promoter binding and G1/S progression; relocalizes to the cytosol in response to hypoxia; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 22932476]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22932476]; GO_component: GO:0005669 - transcription factor TFIID complex [Evidence IDA] [PMID 10788514]; GO_component: GO:0005669 - transcription factor TFIID complex [Evidence IDA] [PMID 15448131]; GO_function: GO:0001075 - RNA polymerase II core promoter sequence-specific DNA binding transcription factor activity involved in preinitiation complex assembly [Evidence IC]; GO_function: GO:0017025 - TBP-class protein binding [Evidence IDA] [PMID 11677244]; GO_function: GO:0003682 - chromatin binding [Evidence IDA] [PMID 10817999]; GO_function: GO:0003682 - chromatin binding [Evidence IDA] [PMID 10818000]; GO_function: GO:0003682 - chromatin binding [Evidence IDA] [PMID 12600943]; GO_function: GO:0004402 - histone acetyltransferase activity [Evidence IEA]; GO_function: GO:0004402 - histone acetyltransferase activity [Evidence IDA] [PMID 8980232]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0032947 - protein complex scaffold [Evidence IDA,IMP] [PMID 15143185]; GO_function: GO:0032947 - protein complex scaffold [Evidence IMP] [PMID 9844639]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016746 - transferase activity, transferring acyl groups [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0051123 - RNA polymerase II transcriptional preinitiation complex assembly [Evidence IMP] [PMID 10713163]; GO_process: GO:0051123 - RNA polymerase II transcriptional preinitiation complex assembly [Evidence IMP] [PMID 12600943]; GO_process: GO:0051123 - RNA polymerase II transcriptional preinitiation complex assembly [Evidence IMP] [PMID 12840001]; GO_process: GO:0016568 - chromatin modification [Evidence IEA]; GO_process: GO:0016573 - histone acetylation [Evidence IEA]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IDA] [PMID 12138208]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IDA] [PMID 15448131]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IMP] [PMID 9288741]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IMP] [PMID 9288742]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Taf1p 1529943 TAF1 30034413 TAF1 Sugiyamaella lignohabitans Taf1p XP_018737360.1 1526854 D 796027 CDS AWJ20_2497 30034414 complement(1530754..1532079) B 1 NC_031674.1 Protein involved in an early step of 60S ribosomal subunit biogenesis; essential for cell growth and replication of killer M1 dsRNA virus; contains four beta-transducin repeats; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IDA] [PMID 2826479]; GO_component: GO:0031965 - nuclear membrane [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0000466 - maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 17308036]; GO_process: GO:0000463 - maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 17308036]; GO_process: GO:0000027 - ribosomal large subunit assembly [Evidence IGI,IMP,IPI] [PMID 17308036]; GO_process: GO:0042273 - ribosomal large subunit biogenesis [Evidence IMP] [PMID 7739558]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; Mak11p 1532079 MAK11 30034414 MAK11 Sugiyamaella lignohabitans Mak11p XP_018737361.1 1530754 R 796027 CDS AWJ20_2498 30034415 1532557..1533159 B 1 NC_031674.1 Pentafunctional arom protein; catalyzes steps 2 through 6 in the biosynthesis of chorismate, which is a precursor to aromatic amino acids; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0003855 - 3-dehydroquinate dehydratase activity [Evidence IEA,IEA]; GO_function: GO:0003855 - 3-dehydroquinate dehydratase activity [Evidence IDA] [PMID 6355828]; GO_function: GO:0003856 - 3-dehydroquinate synthase activity [Evidence IEA,IEA]; GO_function: GO:0003856 - 3-dehydroquinate synthase activity [Evidence IDA] [PMID 6355828]; GO_function: GO:0003866 - 3-phosphoshikimate 1-carboxyvinyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0003866 - 3-phosphoshikimate 1-carboxyvinyltransferase activity [Evidence IDA] [PMID 6355828]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA,IEA]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0016829 - lyase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0004764 - shikimate 3-dehydrogenase (NADP+) activity [Evidence IEA,IEA]; GO_function: GO:0004764 - shikimate 3-dehydrogenase (NADP+) activity [Evidence IDA] [PMID 6355828]; GO_function: GO:0004765 - shikimate kinase activity [Evidence IEA,IEA]; GO_function: GO:0004765 - shikimate kinase activity [Evidence IDA] [PMID 6355828]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016765 - transferase activity, transferring alkyl or aryl (other than methyl) groups [Evidence IEA]; GO_process: GO:0009073 - aromatic amino acid family biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0009423 - chorismate biosynthetic process [Evidence IEA]; GO_process: GO:0009423 - chorismate biosynthetic process [Evidence TAS] [PMID 1943992]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; pentafunctional protein ARO1p 1533159 ARO1 30034415 ARO1 Sugiyamaella lignohabitans pentafunctional protein ARO1p XP_018737362.1 1532557 D 796027 CDS AWJ20_2499 30034416 1533336..1537340 B 1 NC_031674.1 Pentafunctional arom protein; catalyzes steps 2 through 6 in the biosynthesis of chorismate, which is a precursor to aromatic amino acids; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0003855 - 3-dehydroquinate dehydratase activity [Evidence IEA,IEA]; GO_function: GO:0003855 - 3-dehydroquinate dehydratase activity [Evidence IDA] [PMID 6355828]; GO_function: GO:0003856 - 3-dehydroquinate synthase activity [Evidence IEA,IEA]; GO_function: GO:0003856 - 3-dehydroquinate synthase activity [Evidence IDA] [PMID 6355828]; GO_function: GO:0003866 - 3-phosphoshikimate 1-carboxyvinyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0003866 - 3-phosphoshikimate 1-carboxyvinyltransferase activity [Evidence IDA] [PMID 6355828]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA,IEA]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0016829 - lyase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0004764 - shikimate 3-dehydrogenase (NADP+) activity [Evidence IEA,IEA]; GO_function: GO:0004764 - shikimate 3-dehydrogenase (NADP+) activity [Evidence IDA] [PMID 6355828]; GO_function: GO:0004765 - shikimate kinase activity [Evidence IEA,IEA]; GO_function: GO:0004765 - shikimate kinase activity [Evidence IDA] [PMID 6355828]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016765 - transferase activity, transferring alkyl or aryl (other than methyl) groups [Evidence IEA]; GO_process: GO:0009073 - aromatic amino acid family biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0009423 - chorismate biosynthetic process [Evidence IEA]; GO_process: GO:0009423 - chorismate biosynthetic process [Evidence TAS] [PMID 1943992]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; pentafunctional protein ARO1p 1537340 ARO1 30034416 ARO1 Sugiyamaella lignohabitans pentafunctional protein ARO1p XP_018737363.1 1533336 D 796027 CDS AWJ20_2500 30034419 1539419..1540339 B 1 NC_031674.1 hydrophobic surface binding protein A 1540339 30034419 AWJ20_2500 Sugiyamaella lignohabitans hydrophobic surface binding protein A XP_018737364.1 1539419 D 796027 CDS AWJ20_2501 30034420 1541244..1544048 B 1 NC_031674.1 GTPase component of U5 snRNP involved in mRNA splicing via spliceosome; binds directly to U5 snRNA; proposed to be involved in conformational changes of the spliceosome; similarity to ribosomal translocation factor EF-2; GO_component: GO:0046540 - U4/U6 x U5 tri-snRNP complex [Evidence IDA] [PMID 10377396]; GO_component: GO:0046540 - U4/U6 x U5 tri-snRNP complex [Evidence IDA] [PMID 10449419]; GO_component: GO:0005682 - U5 snRNP [Evidence IDA] [PMID 11720284]; GO_component: GO:0005682 - U5 snRNP [Evidence IDA] [PMID 11720285]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0005525 - GTP binding [Evidence IEA,IEA]; GO_function: GO:0005525 - GTP binding [Evidence ISS] [PMID 9233818]; GO_function: GO:0003924 - GTPase activity [Evidence IEA]; GO_function: GO:0003924 - GTPase activity [Evidence IMP,ISS] [PMID 9233818]; GO_function: GO:0030623 - U5 snRNA binding [Evidence IDA] [PMID 9848662]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006184 - GTP catabolic process [Evidence IEA]; GO_process: GO:0008380 - RNA splicing [Evidence IEA]; GO_process: GO:0000349 - generation of catalytic spliceosome for first transesterification step [Evidence IGI] [PMID 15911574]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0000398 - mRNA splicing, via spliceosome [Evidence IMP] [PMID 9233818]; GO_process: GO:0000244 - spliceosomal tri-snRNP complex assembly [Evidence IMP] [PMID 16540695]; GO_process: GO:0000388 - spliceosome conformational change to release U4 (or U4atac) and U1 (or U11) [Evidence IMP] [PMID 16540695]; U5 snRNP GTPase SNU114 1544048 SNU114 30034420 SNU114 Sugiyamaella lignohabitans U5 snRNP GTPase SNU114 XP_018737365.1 1541244 D 796027 CDS AWJ20_2502 30034421 complement(1544153..1545367) B 1 NC_031674.1 Required for 25S rRNA maturation and 60S ribosomal subunit assembly; localizes to the nucleolus and in foci along nuclear periphery; constituent of 66S pre-ribosomal particles; cooperates with Rrs1p and Mps3p to mediate telomere clustering by binding Sir4p, but is not involved in telomere tethering; GO_component: GO:0034399 - nuclear periphery [Evidence IDA] [PMID 21822217]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 10849420]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 11583614]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 17443350]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_process: GO:0000280 - nuclear division [Evidence IMP] [PMID 15515129]; GO_process: GO:0006364 - rRNA processing [Evidence IMP] [PMID 10849420]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; Ebp2p 1545367 EBP2 30034421 EBP2 Sugiyamaella lignohabitans Ebp2p XP_018737366.1 1544153 R 796027 CDS AWJ20_2503 30034422 1545638..1545982 B 1 NC_031674.1 Farnesyl pyrophosphate synthetase; has both dimethylallyltranstransferase and geranyltranstransferase activities; catalyzes the formation of C15 farnesyl pyrophosphate units for isoprenoid and sterol biosynthesis; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 19416104]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 19416104]; GO_function: GO:0004161 - dimethylallyltranstransferase activity [Evidence IEA]; GO_function: GO:0004161 - dimethylallyltranstransferase activity [Evidence IDA] [PMID 2681213]; GO_function: GO:0004337 - geranyltranstransferase activity [Evidence IEA]; GO_function: GO:0004337 - geranyltranstransferase activity [Evidence IDA] [PMID 2681213]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006696 - ergosterol biosynthetic process [Evidence IMP] [PMID 1779710]; GO_process: GO:0045337 - farnesyl diphosphate biosynthetic process [Evidence IEA]; GO_process: GO:0045337 - farnesyl diphosphate biosynthetic process [Evidence IDA] [PMID 2681213]; GO_process: GO:0033384 - geranyl diphosphate biosynthetic process [Evidence IEA]; GO_process: GO:0008299 - isoprenoid biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0008299 - isoprenoid biosynthetic process [Evidence IDA] [PMID 2681213]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; bifunctional (2E,6E)-farnesyl diphosphate synthase/dimethylallyltranstransferase 1545982 ERG20 30034422 ERG20 Sugiyamaella lignohabitans bifunctional (2E,6E)-farnesyl diphosphate synthase/dimethylallyltranstransferase XP_018737367.1 1545638 D 796027 CDS AWJ20_2504 30034423 1546065..1546757 B 1 NC_031674.1 Farnesyl pyrophosphate synthetase; has both dimethylallyltranstransferase and geranyltranstransferase activities; catalyzes the formation of C15 farnesyl pyrophosphate units for isoprenoid and sterol biosynthesis; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 19416104]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 19416104]; GO_function: GO:0004161 - dimethylallyltranstransferase activity [Evidence IEA]; GO_function: GO:0004161 - dimethylallyltranstransferase activity [Evidence IDA] [PMID 2681213]; GO_function: GO:0004337 - geranyltranstransferase activity [Evidence IEA]; GO_function: GO:0004337 - geranyltranstransferase activity [Evidence IDA] [PMID 2681213]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006696 - ergosterol biosynthetic process [Evidence IMP] [PMID 1779710]; GO_process: GO:0045337 - farnesyl diphosphate biosynthetic process [Evidence IEA]; GO_process: GO:0045337 - farnesyl diphosphate biosynthetic process [Evidence IDA] [PMID 2681213]; GO_process: GO:0033384 - geranyl diphosphate biosynthetic process [Evidence IEA]; GO_process: GO:0008299 - isoprenoid biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0008299 - isoprenoid biosynthetic process [Evidence IDA] [PMID 2681213]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; bifunctional (2E,6E)-farnesyl diphosphate synthase/dimethylallyltranstransferase 1546757 ERG20 30034423 ERG20 Sugiyamaella lignohabitans bifunctional (2E,6E)-farnesyl diphosphate synthase/dimethylallyltranstransferase XP_018737368.1 1546065 D 796027 CDS AWJ20_2505 30034424 complement(1546924..1552992) B 1 NC_031674.1 Huge dynein-related AAA-type ATPase (midasin); forms extended pre-60S particle with the Rix1 complex (Rix1p-Ipi1p-Ipi3p); acts in removal of ribosomal biogenesis factors at successive steps of pre-60S assembly and export from nucleus; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005654 - nucleoplasm [Evidence IDA] [PMID 15528184]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 12102729]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 23212245]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016887 - ATPase activity [Evidence IEA]; GO_function: GO:0016887 - ATPase activity [Evidence ISS] [PMID 12102729]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0006461 - protein complex assembly [Evidence IEA]; GO_process: GO:0006364 - rRNA processing [Evidence IMP] [PMID 12837249]; GO_process: GO:0000027 - ribosomal large subunit assembly [Evidence IPI] [PMID 11583615]; GO_process: GO:0000027 - ribosomal large subunit assembly [Evidence IPI] [PMID 12374754]; GO_process: GO:0000027 - ribosomal large subunit assembly [Evidence IMP] [PMID 15528184]; AAA family ATPase midasin 1552992 MDN1 30034424 MDN1 Sugiyamaella lignohabitans AAA family ATPase midasin XP_018737369.1 1546924 R 796027 CDS AWJ20_2506 30034425 complement(join(1553653..1553671,1553934..1561960)) B 1 NC_031674.1 Huge dynein-related AAA-type ATPase (midasin); forms extended pre-60S particle with the Rix1 complex (Rix1p-Ipi1p-Ipi3p); acts in removal of ribosomal biogenesis factors at successive steps of pre-60S assembly and export from nucleus; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005654 - nucleoplasm [Evidence IDA] [PMID 15528184]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 12102729]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 23212245]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016887 - ATPase activity [Evidence IEA]; GO_function: GO:0016887 - ATPase activity [Evidence ISS] [PMID 12102729]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0006461 - protein complex assembly [Evidence IEA]; GO_process: GO:0006364 - rRNA processing [Evidence IMP] [PMID 12837249]; GO_process: GO:0000027 - ribosomal large subunit assembly [Evidence IPI] [PMID 11583615]; GO_process: GO:0000027 - ribosomal large subunit assembly [Evidence IPI] [PMID 12374754]; GO_process: GO:0000027 - ribosomal large subunit assembly [Evidence IMP] [PMID 15528184]; AAA family ATPase midasin 1561960 MDN1 30034425 MDN1 Sugiyamaella lignohabitans AAA family ATPase midasin XP_018737370.1 1553653 R 796027 CDS AWJ20_2507 30034426 1564247..1566082 B 1 NC_031674.1 RNA exonuclease; required for maturation of the RNA component of RNase MRP; functions redundantly with Rnh70p and Rex2p in processing of U5 snRNA and RNase P RNA; member of RNase D family of exonucleases; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0008408 - 3'-5' exonuclease activity [Evidence ISS] [PMID 9396823]; GO_function: GO:0000175 - 3'-5'-exoribonuclease activity [Evidence IMP] [PMID 10716935]; GO_function: GO:0004527 - exonuclease activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0004518 - nuclease activity [Evidence IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_process: GO:0034476 - U5 snRNA 3'-end processing [Evidence IGI] [PMID 10716935]; GO_process: GO:0000467 - exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IGI] [PMID 10716935]; GO_process: GO:0043628 - ncRNA 3'-end processing [Evidence IMP] [PMID 10716935]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; Rex3p 1566082 REX3 30034426 REX3 Sugiyamaella lignohabitans Rex3p XP_018737371.1 1564247 D 796027 CDS AWJ20_2509 30034428 1570621..1571655 B 1 NC_031674.1 3-methylbutanal reductase and NADPH-dependent methylglyoxal reductase; stress induced (osmotic, ionic, oxidative, heat shock and heavy metals); regulated by the HOG pathway; restores resistance to glycolaldehyde by coupling reduction of glycolaldehyde to ethylene glycol and oxidation of NADPH to NADP+; protein abundance increases in response to DNA replication stress; methylglyoxal reductase (NADPH-dependent) is also known as D-lactaldehyde dehydrogenase; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 12206772]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 12206772]; GO_function: GO:0046568 - 3-methylbutanol:NAD(P) oxidoreductase activity [Evidence IEA]; GO_function: GO:0046568 - 3-methylbutanol:NAD(P) oxidoreductase activity [Evidence IMP] [PMID 16999827]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0050662 - coenzyme binding [Evidence IEA]; GO_function: GO:0043892 - methylglyoxal reductase (NADPH-dependent) activity [Evidence IEA]; GO_function: GO:0043892 - methylglyoxal reductase (NADPH-dependent) activity [Evidence IDA] [PMID 12722185]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_process: GO:0044237 - cellular metabolic process [Evidence IEA]; GO_process: GO:0008204 - ergosterol metabolic process [Evidence IGI,IMP] [PMID 16598690]; GO_process: GO:0030447 - filamentous growth [Evidence IMP] [PMID 16999827]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; methylglyoxal reductase (NADPH-dependent) GRE2 1571655 GRE2 30034428 GRE2 Sugiyamaella lignohabitans methylglyoxal reductase (NADPH-dependent) GRE2 XP_018737372.1 1570621 D 796027 CDS AWJ20_2510 30034430 1573923..1576328 B 1 NC_031674.1 Arf3p polarization-specific docking factor; required for the polarized distribution of the ADP-ribosylation factor, Arf3p; participates in polarity development and maintenance of a normal haploid budding pattern; interacts with Cnm7p; GO_component: GO:0005938 - cell cortex [Evidence IEA]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 18397879]; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IMP] [PMID 14515169]; GO_component: GO:0005634 - nucleus [Evidence IGI] [PMID 18397879]; GO_component: GO:0048471 - perinuclear region of cytoplasm [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IMP] [PMID 14515169]; GO_component: GO:0005886 - plasma membrane [Evidence IDA,IMP] [PMID 18397879]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0051666 - actin cortical patch localization [Evidence IGI,IMP] [PMID 18397879]; GO_process: GO:0008105 - asymmetric protein localization [Evidence IMP] [PMID 18397879]; GO_process: GO:0000282 - cellular bud site selection [Evidence IMP] [PMID 18397879]; Afi1p 1576328 AFI1 30034430 AFI1 Sugiyamaella lignohabitans Afi1p XP_018737373.1 1573923 D 796027 CDS AWJ20_2511 30034431 1577883..1578599 B 1 NC_031674.1 Efm4p 1578599 SEE1 30034431 SEE1 Sugiyamaella lignohabitans Efm4p XP_018737374.1 1577883 D 796027 CDS AWJ20_2512 30034432 complement(1578884..1580509) B 1 NC_031674.1 hypothetical protein; involved in nuclear processes of the Ran-GTPase cycle; involved in nuclear protein export; contains Ran Binding Domain and FxFG repeats; interacts with Srm1p, GTP-Gsp1p, Rna1p and Crm1p; relocalizes to the cytosol in response to hypoxia; not essential for viability; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 22932476]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0005643 - nuclear pore [Evidence IDA] [PMID 10684247]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22932476]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9121474]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9395535]; GO_function: GO:0005096 - GTPase activator activity [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0046907 - intracellular transport [Evidence IEA]; GO_process: GO:0043547 - positive regulation of GTPase activity [Evidence IEA]; GO_process: GO:0006611 - protein export from nucleus [Evidence IMP] [PMID 9636166]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0031938 - regulation of chromatin silencing at telomere [Evidence IMP] [PMID 17904525]; GO_process: GO:0000056 - ribosomal small subunit export from nucleus [Evidence IMP] [PMID 12082158]; GO_process: GO:0006810 - transport [Evidence IEA]; Yrb2p 1580509 YRB2 30034432 YRB2 Sugiyamaella lignohabitans Yrb2p XP_018737375.1 1578884 R 796027 CDS AWJ20_2513 30034433 1583496..1585196 B 1 NC_031674.1 Minus-end-directed microtubule motor; functions in mitosis and meiosis, localizes to the spindle pole body and localization is dependent on functional Cik1p, required for nuclear fusion during mating; potential Cdc28p substrate; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005881 - cytoplasmic microtubule [Evidence IDA] [PMID 2138512]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0005871 - kinesin complex [Evidence IEA]; GO_component: GO:0005874 - microtubule [Evidence IEA]; GO_component: GO:0005874 - microtubule [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0000922 - spindle pole [Evidence IDA] [PMID 14562095]; GO_component: GO:0005816 - spindle pole body [Evidence IEA]; GO_component: GO:0005816 - spindle pole body [Evidence IDA] [PMID 11729143]; GO_component: GO:0005816 - spindle pole body [Evidence IDA] [PMID 2138512]; GO_component: GO:0005816 - spindle pole body [Evidence IDA] [PMID 8106549]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0008017 - microtubule binding [Evidence IEA]; GO_function: GO:0008017 - microtubule binding [Evidence IDA] [PMID 22734002]; GO_function: GO:0003777 - microtubule motor activity [Evidence IEA]; GO_function: GO:0008569 - minus-end-directed microtubule motor activity [Evidence IDA] [PMID 8041770]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0046982 - protein heterodimerization activity [Evidence IPI] [PMID 16107877]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0000741 - karyogamy [Evidence IEA]; GO_process: GO:0000742 - karyogamy involved in conjugation with cellular fusion [Evidence IMP] [PMID 2138512]; GO_process: GO:0007126 - meiotic nuclear division [Evidence IDA,IMP] [PMID 11729143]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0007018 - microtubule-based movement [Evidence IEA]; GO_process: GO:0007067 - mitotic nuclear division [Evidence IGI] [PMID 9201713]; GO_process: GO:0007064 - mitotic sister chromatid cohesion [Evidence IGI,IMP] [PMID 14742714]; GO_process: GO:0000743 - nuclear migration involved in conjugation with cellular fusion [Evidence IMP] [PMID 16380440]; GO_process: GO:0000743 - nuclear migration involved in conjugation with cellular fusion [Evidence IMP] [PMID 19386762]; GO_process: GO:0000743 - nuclear migration involved in conjugation with cellular fusion [Evidence IMP] [PMID 2138512]; Kar3p 1585196 KAR3 30034433 KAR3 Sugiyamaella lignohabitans Kar3p XP_018737376.1 1583496 D 796027 CDS AWJ20_2514 30034434 complement(1585703..1585966) B 1 NC_031674.1 uncharacterized protein 1585966 30034434 AWJ20_2514 Sugiyamaella lignohabitans uncharacterized protein XP_018737377.1 1585703 R 796027 CDS AWJ20_2515 30034435 1587045..1587971 B 1 NC_031674.1 uncharacterized protein 1587971 30034435 AWJ20_2515 Sugiyamaella lignohabitans uncharacterized protein XP_018737378.1 1587045 D 796027 CDS AWJ20_2516 30034436 complement(1588882..1590405) B 1 NC_031674.1 Essential protein with two zinc fingers; present in the nucleus of growing cells but relocates to the cytoplasm in starved cells via a process mediated by Cpr1p; binds to translation elongation factor eEF-1 (Tef1p); relative distribution to the nucleus increases upon DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 9852145]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9852145]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0005515 - protein binding [Evidence IPI] [PMID 17704259]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0009267 - cellular response to starvation [Evidence IMP] [PMID 12242280]; GO_process: GO:0007346 - regulation of mitotic cell cycle [Evidence IMP] [PMID 9852145]; Zpr1p 1590405 ZPR1 30034436 ZPR1 Sugiyamaella lignohabitans Zpr1p XP_018737379.1 1588882 R 796027 CDS AWJ20_2517 30034437 complement(1595750..1598167) B 1 NC_031674.1 ER membrane protein involved in regulation of OLE1 transcription; inactive ER form dimerizes and one subunit is then activated by ubiquitin/proteasome-dependent processing followed by nuclear targeting; MGA2 has a paralog, SPT23, that arose from the whole genome duplication; GO_component: GO:0030176 - integral component of endoplasmic reticulum membrane [Evidence IDA,ISM] [PMID 11007476]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 19061897]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0070417 - cellular response to cold [Evidence IMP] [PMID 11855848]; GO_process: GO:0030466 - chromatin silencing at silent mating-type cassette [Evidence IGI] [PMID 11063674]; GO_process: GO:0048255 - mRNA stabilization [Evidence IMP] [PMID 15220333]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 11557770]; GO_process: GO:0061399 - positive regulation of transcription from RNA polymerase II promoter in response to cobalt ion [Evidence IMP] [PMID 11509659]; GO_process: GO:0061419 - positive regulation of transcription from RNA polymerase II promoter in response to hypoxia [Evidence IMP] [PMID 11509659]; GO_process: GO:0036083 - positive regulation of unsaturated fatty acid biosynthetic process by positive regulation of transcription from RNA polymerase II promoter [Evidence IGI] [PMID 9927444]; Mga2p 1598167 MGA2 30034437 MGA2 Sugiyamaella lignohabitans Mga2p XP_018737380.1 1595750 R 796027 CDS AWJ20_2518 30034438 complement(1598350..1600251) B 1 NC_031674.1 ER membrane protein involved in regulation of OLE1 transcription; inactive ER form dimerizes and one subunit is then activated by ubiquitin/proteasome-dependent processing followed by nuclear targeting; MGA2 has a paralog, SPT23, that arose from the whole genome duplication; GO_component: GO:0030176 - integral component of endoplasmic reticulum membrane [Evidence IDA,ISM] [PMID 11007476]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 19061897]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0070417 - cellular response to cold [Evidence IMP] [PMID 11855848]; GO_process: GO:0030466 - chromatin silencing at silent mating-type cassette [Evidence IGI] [PMID 11063674]; GO_process: GO:0048255 - mRNA stabilization [Evidence IMP] [PMID 15220333]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 11557770]; GO_process: GO:0061399 - positive regulation of transcription from RNA polymerase II promoter in response to cobalt ion [Evidence IMP] [PMID 11509659]; GO_process: GO:0061419 - positive regulation of transcription from RNA polymerase II promoter in response to hypoxia [Evidence IMP] [PMID 11509659]; GO_process: GO:0036083 - positive regulation of unsaturated fatty acid biosynthetic process by positive regulation of transcription from RNA polymerase II promoter [Evidence IGI] [PMID 9927444]; Mga2p 1600251 MGA2 30034438 MGA2 Sugiyamaella lignohabitans Mga2p XP_018737381.1 1598350 R 796027 CDS AWJ20_2520 30034441 1602669..1606022 B 1 NC_031674.1 Deoxycytidyl transferase; involved in repair of abasic sites and adducted guanines in damaged DNA by translesion synthesis (TLS); forms a complex with the subunits of DNA polymerase zeta, Rev3p and Rev7p; relocalizes from nucleus to cytoplasm upon DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16452144]; GO_component: GO:0000790 - nuclear chromatin [Evidence IDA] [PMID 16546083]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_component: GO:0005657 - replication fork [Evidence IPI] [PMID 17517887]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]; GO_function: GO:0003887 - DNA-directed DNA polymerase activity [Evidence IDA] [PMID 8751446]; GO_function: GO:0003684 - damaged DNA binding [Evidence IEA]; GO_function: GO:0017125 - deoxycytidyl transferase activity [Evidence IDA] [PMID 8751446]; GO_function: GO:0000287 - magnesium ion binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016779 - nucleotidyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006281 - DNA repair [Evidence IEA,IEA]; GO_process: GO:0006260 - DNA replication [Evidence IEA]; GO_process: GO:0006261 - DNA-dependent DNA replication [Evidence IEA]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0070987 - error-free translesion synthesis [Evidence IMP] [PMID 10540291]; GO_process: GO:0070987 - error-free translesion synthesis [Evidence IDA] [PMID 8751446]; GO_process: GO:0042276 - error-prone translesion synthesis [Evidence IMP] [PMID 17248528]; GO_process: GO:0042276 - error-prone translesion synthesis [Evidence IDA] [PMID 8751446]; GO_process: GO:0042276 - error-prone translesion synthesis [Evidence IGI] [PMID 9765213]; Rev1p 1606022 REV1 30034441 REV1 Sugiyamaella lignohabitans Rev1p XP_018737382.1 1602669 D 796027 CDS AWJ20_2521 30034442 complement(1606623..1607990) B 1 NC_031674.1 Pyruvate kinase; functions as a homotetramer in glycolysis to convert phosphoenolpyruvate to pyruvate, the input for aerobic (TCA cycle) or anaerobic (glucose fermentation) respiration; regulated via allosteric activation by fructose bisphosphate; CDC19 has a paralog, PYK2, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14718557]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 16622836]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA,IEA]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000287 - magnesium ion binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0030955 - potassium ion binding [Evidence IEA]; GO_function: GO:0004743 - pyruvate kinase activity [Evidence IEA,IEA]; GO_function: GO:0004743 - pyruvate kinase activity [Evidence IDA] [PMID 12063246]; GO_function: GO:0004743 - pyruvate kinase activity [Evidence IMP] [PMID 323230]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006096 - glycolytic process [Evidence IEA,IEA,IEA]; GO_process: GO:0006096 - glycolytic process [Evidence IMP] [PMID 323230]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; GO_process: GO:0006090 - pyruvate metabolic process [Evidence IMP] [PMID 323230]; pyruvate kinase CDC19 1607990 CDC19 30034442 CDC19 Sugiyamaella lignohabitans pyruvate kinase CDC19 XP_018737383.1 1606623 R 796027 CDS AWJ20_2522 30034443 complement(1612718..1613635) B 1 NC_031674.1 uricase 1613635 30034443 AWJ20_2522 Sugiyamaella lignohabitans uricase XP_018737384.1 1612718 R 796027 CDS AWJ20_2523 30034444 1615734..1617047 B 1 NC_031674.1 Mitochondrial carrier protein; involved in the accumulation of CoA in the mitochondrial matrix; homolog of human Graves disease protein; does not encode an isozyme of Leu4p, as first hypothesized; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA,IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IDA] [PMID 11158296]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0015228 - coenzyme A transmembrane transporter activity [Evidence IMP] [PMID 11158296]; GO_process: GO:0015880 - coenzyme A transport [Evidence IMP] [PMID 11158296]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Leu5p 1617047 LEU5 30034444 LEU5 Sugiyamaella lignohabitans Leu5p XP_018737385.1 1615734 D 796027 CDS AWJ20_2524 30034445 complement(1617338..1618687) B 1 NC_031674.1 tRNA threonylcarbamoyladenosine dehydratase; required for the ct6A tRNA base modification, where an adenosine at position 37 is modified to form a cyclized active ester with an oxazolone ring; localized to the mitochondrial outer membrane; TCD2 has a paralog, TCD1, that arose from the whole genome duplication; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IEA,IEA]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IDA] [PMID 16407407]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0061503 - tRNA threonylcarbamoyladenosine dehydratase [Evidence IMP] [PMID 23242255]; GO_process: GO:0061504 - cyclic threonylcarbamoyladenosine biosynthetic process [Evidence IMP] [PMID 23242255]; Tcd2p 1618687 TCD2 30034445 TCD2 Sugiyamaella lignohabitans Tcd2p XP_018737386.1 1617338 R 796027 CDS AWJ20_2525 30034446 complement(1619905..1621110) B 1 NC_031674.1 uncharacterized protein 1621110 30034446 AWJ20_2525 Sugiyamaella lignohabitans uncharacterized protein XP_018737387.1 1619905 R 796027 CDS AWJ20_2526 30034447 complement(1634704..1635279) B 1 NC_031674.1 Negative regulator of actin nucleation-promoting factor activity; interacts with Las17p, a homolog of human Wiskott-Aldrich Syndrome protein (WASP), via an N-terminal SH3 domain, and along with LSB1 cooperatively inhibits the nucleation of actin filaments; induces the appearance of the [PIN+] prion when overproduced; PIN3 has a paralog, LSB1, that arose from the whole genome duplication; GO_component: GO:0030479 - actin cortical patch [Evidence IEA]; GO_component: GO:0030479 - actin cortical patch [Evidence IDA] [PMID 23577202]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 23577202]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0034316 - negative regulation of Arp2/3 complex-mediated actin nucleation [Evidence IDA,IPI] [PMID 23577202]; Pin3p 1635279 PIN3 30034447 PIN3 Sugiyamaella lignohabitans Pin3p XP_018737388.1 1634704 R 796027 CDS AWJ20_2527 30034448 complement(1636407..1637432) B 1 NC_031674.1 Subunit of the COMPASS (Set1C) histone H3K4 methyltransferase complex; required for Set1C stability and optimal activity; COMPASS methylates histone H3 on lys 4 and is involved in telomeric silencing; subunit of CPF (cleavage and polyadenylation factor), a complex involved in RNAP II transcription termination; GO_component: GO:0048188 - Set1C/COMPASS complex [Evidence IPI] [PMID 11687631]; GO_component: GO:0048188 - Set1C/COMPASS complex [Evidence IPI] [PMID 11742990]; GO_component: GO:0048188 - Set1C/COMPASS complex [Evidence IPI] [PMID 11752412]; GO_component: GO:0005694 - chromosome [Evidence IEA]; GO_component: GO:0000781 - chromosome, telomeric region [Evidence IEA,IEA]; GO_component: GO:0005847 - mRNA cleavage and polyadenylation specificity factor complex [Evidence IDA] [PMID 12819204]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0042800 - histone methyltransferase activity (H3-K4 specific) [Evidence IDA] [PMID 11742990]; GO_function: GO:0042800 - histone methyltransferase activity (H3-K4 specific) [Evidence IDA] [PMID 11805083]; GO_process: GO:0051568 - histone H3-K4 methylation [Evidence IDA] [PMID 11742990]; GO_process: GO:0051568 - histone H3-K4 methylation [Evidence IDA] [PMID 11752412]; GO_process: GO:0051568 - histone H3-K4 methylation [Evidence IDA] [PMID 11805083]; GO_process: GO:0034729 - histone H3-K79 methylation [Evidence IMP] [PMID 18083099]; GO_process: GO:0031124 - mRNA 3'-end processing [Evidence IMP] [PMID 15146080]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0031126 - snoRNA 3'-end processing [Evidence IMP] [PMID 15146080]; GO_process: GO:0000723 - telomere maintenance [Evidence IMP] [PMID 15146080]; GO_process: GO:0030847 - termination of RNA polymerase II transcription, exosome-dependent [Evidence IPI] [PMID 12819204]; GO_process: GO:0030846 - termination of RNA polymerase II transcription, poly(A)-coupled [Evidence IPI] [PMID 12819204]; Swd2p 1637432 SWD2 30034448 SWD2 Sugiyamaella lignohabitans Swd2p XP_018737389.1 1636407 R 796027 CDS AWJ20_2528 30034449 complement(1639552..1640559) B 1 NC_031674.1 Putative pyridoxal kinase; a key enzyme in vitamin B6 metabolism; involved in bud-site selection; diploid mutants display a random rather than a bipolar budding pattern; similarity to yeast BUD16 and human pyridoxal kinase (PDXK); GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0008478 - pyridoxal kinase activity [Evidence IEA,IEA]; GO_function: GO:0008478 - pyridoxal kinase activity [Evidence ISA] [PMID 9099727]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0000282 - cellular bud site selection [Evidence IMP] [PMID 11452010]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; GO_process: GO:0009443 - pyridoxal 5'-phosphate salvage [Evidence IEA]; GO_process: GO:0042823 - pyridoxal phosphate biosynthetic process [Evidence IC] [PMID 9099727]; putative pyridoxal kinase BUD17 1640559 BUD17 30034449 BUD17 Sugiyamaella lignohabitans putative pyridoxal kinase BUD17 XP_018737390.1 1639552 R 796027 CDS AWJ20_2529 30034450 1641325..1642293 B 1 NC_031674.1 Type I HSP40 co-chaperone; involved in regulation of HSP90 and HSP70 functions; critical for determining cell size at Start as a function of growth rate; involved in protein translocation across membranes; member of the DnaJ family; GO_component: GO:0072380 - TRC complex [Evidence IDA] [PMID 20850366]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 1869583]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 8144572]; GO_component: GO:0048471 - perinuclear region of cytoplasm [Evidence IEA]; GO_component: GO:0048471 - perinuclear region of cytoplasm [Evidence IDA] [PMID 1869583]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0001671 - ATPase activator activity [Evidence IDA] [PMID 1400408]; GO_function: GO:0001671 - ATPase activator activity [Evidence IDA] [PMID 15342786]; GO_function: GO:0031072 - heat shock protein binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0051082 - unfolded protein binding [Evidence IEA]; GO_function: GO:0051082 - unfolded protein binding [Evidence IDA] [PMID 9774392]; GO_process: GO:0006458 - 'de novo' protein folding [Evidence IMP] [PMID 10567418]; GO_process: GO:0030433 - ER-associated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 15252059]; GO_process: GO:0030433 - ER-associated ubiquitin-dependent protein catabolic process [Evidence IGI,IMP] [PMID 15342786]; GO_process: GO:0006457 - protein folding [Evidence IEA]; GO_process: GO:0042026 - protein refolding [Evidence IDA] [PMID 9674429]; GO_process: GO:0045047 - protein targeting to ER [Evidence IMP] [PMID 1473150]; GO_process: GO:0006626 - protein targeting to mitochondrion [Evidence IMP] [PMID 1729605]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0009408 - response to heat [Evidence IEA]; GO_process: GO:0006950 - response to stress [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; type I HSP40 co-chaperone YDJ1 1642293 YDJ1 30034450 YDJ1 Sugiyamaella lignohabitans type I HSP40 co-chaperone YDJ1 XP_018737391.1 1641325 D 796027 CDS AWJ20_2530 30034452 complement(1643356..1643802) B 1 NC_031674.1 uncharacterized protein 1643802 30034452 AWJ20_2530 Sugiyamaella lignohabitans uncharacterized protein XP_018737392.1 1643356 R 796027 CDS AWJ20_2531 30034453 complement(1646230..1648248) B 1 NC_031674.1 Protein with a role in cellular adhesion and filamentous growth; also endosome-to-vacuole sorting; similar to Tmn3p; member of Transmembrane Nine family of proteins with 9 transmembrane segments; EMP70 has a paralog, TMN2, that arose from the whole genome duplication; GO_component: GO:0005768 - endosome [Evidence IEA]; GO_component: GO:0005768 - endosome [Evidence IDA] [PMID 8314797]; GO_component: GO:0010008 - endosome membrane [Evidence IEA]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 20681974]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006878 - cellular copper ion homeostasis [Evidence IGI,IMP] [PMID 20681974]; GO_process: GO:0016197 - endosomal transport [Evidence IMP] [PMID 20526336]; GO_process: GO:0001403 - invasive growth in response to glucose limitation [Evidence IMP] [PMID 18178563]; GO_process: GO:0007124 - pseudohyphal growth [Evidence IGI] [PMID 18178563]; GO_process: GO:0007034 - vacuolar transport [Evidence IGI] [PMID 20526336]; Emp70p 1648248 EMP70 30034453 EMP70 Sugiyamaella lignohabitans Emp70p XP_018737393.1 1646230 R 796027 CDS AWJ20_2532 30034454 complement(1648945..1649895) B 1 NC_031674.1 NADPH-dependent alpha-keto amide reductase; reduces aromatic alpha-keto amides, aliphatic alpha-keto esters, and aromatic alpha-keto esters; member of the aldo-keto reductase (AKR) family; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 16622836]; GO_function: GO:0004032 - alditol:NADP+ 1-oxidoreductase activity [Evidence IDA,ISS] [PMID 11306085]; GO_function: GO:0004033 - aldo-keto reductase (NADP) activity [Evidence IDA] [PMID 17140678]; GO_function: GO:0051268 - alpha-keto amide reductase activity [Evidence IDA] [PMID 15564669]; GO_function: GO:0051269 - alpha-keto ester reductase activity [Evidence IDA] [PMID 15564669]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_process: GO:0043603 - cellular amide metabolic process [Evidence IDA] [PMID 15564669]; GO_process: GO:0006725 - cellular aromatic compound metabolic process [Evidence IDA] [PMID 16268655]; GO_process: GO:0042180 - cellular ketone metabolic process [Evidence IDA] [PMID 17140678]; GO_process: GO:0034599 - cellular response to oxidative stress [Evidence IGI] [PMID 17919749]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; aldo-keto reductase superfamily protein 1649895 30034454 AWJ20_2532 Sugiyamaella lignohabitans aldo-keto reductase superfamily protein XP_018737394.1 1648945 R 796027 CDS AWJ20_2533 30034455 complement(join(1650639..1651459,1652209..1653394)) B 1 NC_031674.1 Outer membrane component of the mitochondrial fusion machinery; binds directly to Fzo1p and Mgm1p and thus links these two GTPases during mitochondrial fusion; involved in fusion of both the outer and inner membranes; facilitates dimerization of Fzo1p during fusion; import into the outer membrane is mediated by Tom70p and Mim1p; has similarity to carrier proteins but is not likely to function as a transmembrane transporter; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0031307 - integral component of mitochondrial outer membrane [Evidence IDA] [PMID 19237599]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IEA,IEA]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IDA] [PMID 16407407]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008053 - mitochondrial fusion [Evidence IGI,IMP] [PMID 11257114]; GO_process: GO:0008053 - mitochondrial fusion [Evidence IMP,IPI] [PMID 12808034]; Ugo1p 1653394 UGO1 30034455 UGO1 Sugiyamaella lignohabitans Ugo1p XP_018737395.1 1650639 R 796027 CDS AWJ20_2534 30034456 complement(1658703..1660709) B 1 NC_031674.1 Protein that regulates expression of Fo-F1 ATP synthase subunits; involved in the regulation of mitochondrial expression of subunits 6 (Atp6p) and 8 (Atp8p) of the Fo-F1 ATP synthase; functions with Nca3p; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0031966 - mitochondrial membrane [Evidence IEA]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IDA] [PMID 16407407]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0009060 - aerobic respiration [Evidence IMP] [PMID 7723016]; GO_process: GO:0016071 - mRNA metabolic process [Evidence IMP] [PMID 7723016]; Nca2p 1660709 NCA2 30034456 NCA2 Sugiyamaella lignohabitans Nca2p XP_018737396.1 1658703 R 796027 CDS AWJ20_2535 30034457 1663348..1663866 B 1 NC_031674.1 hypothetical protein; contains transmembrane domains; involved in secretion of proteins that lack classical secretory signal sequences; component of the detergent-insoluble glycolipid-enriched complexes (DIGs); NCE102 has a paralog, FHN1, that arose from the whole genome duplication; GO_component: GO:0033101 - cellular bud membrane [Evidence IDA] [PMID 19064668]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 11914276]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 8655575]; GO_component: GO:0070250 - mating projection membrane [Evidence IDA] [PMID 19064668]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0045121 - membrane raft [Evidence IDA] [PMID 19064668]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 12469340]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 16622836]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0070941 - eisosome assembly [Evidence IMP] [PMID 19564405]; GO_process: GO:0090002 - establishment of protein localization to plasma membrane [Evidence IMP] [PMID 20581291]; GO_process: GO:0001933 - negative regulation of protein phosphorylation [Evidence IMP] [PMID 19564405]; GO_process: GO:0007009 - plasma membrane organization [Evidence IMP] [PMID 19564405]; GO_process: GO:0009306 - protein secretion [Evidence IGI,IMP] [PMID 8655575]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Nce102p 1663866 NCE102 30034457 NCE102 Sugiyamaella lignohabitans Nce102p XP_018737397.1 1663348 D 796027 CDS AWJ20_2536 30034458 complement(join(1666900..1668694,1670203..1670234,1671013..1672092)) B 1 NC_031674.1 uncharacterized protein 1672092 30034458 AWJ20_2536 Sugiyamaella lignohabitans uncharacterized protein XP_018737398.1 1666900 R 796027 CDS AWJ20_2539 30034461 complement(1677053..1678393) B 1 NC_031674.1 Mu3-like subunit of the clathrin associated protein complex (AP-3); functions in transport of alkaline phosphatase to the vacuole via the alternate pathway; GO_component: GO:0030123 - AP-3 adaptor complex [Evidence IDA] [PMID 9250663]; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA,IEA]; GO_component: GO:0030131 - clathrin adaptor complex [Evidence IEA]; GO_component: GO:0031410 - cytoplasmic vesicle [Evidence IEA]; GO_component: GO:0030659 - cytoplasmic vesicle membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006896 - Golgi to vacuole transport [Evidence IMP] [PMID 9335339]; GO_process: GO:0006886 - intracellular protein transport [Evidence IEA]; GO_process: GO:0006623 - protein targeting to vacuole [Evidence IMP] [PMID 17895371]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IEA]; Apm3p 1678393 APM3 30034461 APM3 Sugiyamaella lignohabitans Apm3p XP_018737399.1 1677053 R 796027 CDS AWJ20_2540 30034463 complement(1678948..1683672) B 1 NC_031674.1 RNA polymerase I largest subunit A190; GO_component: GO:0005736 - DNA-directed RNA polymerase I complex [Evidence IDA] [PMID 11486042]; GO_component: GO:0005736 - DNA-directed RNA polymerase I complex [Evidence IDA] [PMID 9837969]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 15520468]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0003899 - DNA-directed RNA polymerase activity [Evidence IEA,IEA,IEA]; GO_function: GO:0001054 - RNA polymerase I activity [Evidence IDA] [PMID 3054507]; GO_function: GO:0001054 - RNA polymerase I activity [Evidence IDA] [PMID 9837969]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016779 - nucleotidyltransferase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; GO_process: GO:0006360 - transcription from RNA polymerase I promoter [Evidence IDA] [PMID 9837969]; GO_process: GO:0042790 - transcription of nuclear large rRNA transcript from RNA polymerase I promoter [Evidence IGI] [PMID 2023944]; GO_process: GO:0042790 - transcription of nuclear large rRNA transcript from RNA polymerase I promoter [Evidence IMP] [PMID 3054507]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; DNA-directed RNA polymerase I core subunit RPA190 1683672 RPA190 30034463 RPA190 Sugiyamaella lignohabitans DNA-directed RNA polymerase I core subunit RPA190 XP_018737400.1 1678948 R 796027 CDS AWJ20_2541 30034464 1684744..1687542 B 1 NC_031674.1 dolichyl-phosphate-mannose-protein mannosyltransferase PMT1 1687542 PMT1 30034464 PMT1 Sugiyamaella lignohabitans dolichyl-phosphate-mannose-protein mannosyltransferase PMT1 XP_018737401.1 1684744 D 796027 CDS AWJ20_2542 30034465 complement(1687662..1690196) B 1 NC_031674.1 guanine nucleotide exchange factor VPS9 1690196 VPS9 30034465 VPS9 Sugiyamaella lignohabitans guanine nucleotide exchange factor VPS9 XP_018737402.1 1687662 R 796027 CDS AWJ20_2543 30034466 1693961..1695076 B 1 NC_031674.1 uncharacterized protein 1695076 30034466 AWJ20_2543 Sugiyamaella lignohabitans uncharacterized protein XP_018737403.1 1693961 D 796027 CDS AWJ20_2544 30034467 complement(1695311..1697794) B 1 NC_031674.1 uncharacterized protein 1697794 30034467 AWJ20_2544 Sugiyamaella lignohabitans uncharacterized protein XP_018737404.1 1695311 R 796027 CDS AWJ20_2545 30034468 complement(1699336..1700847) B 1 NC_031674.1 Plasma membrane transporter of the major facilitator superfamily; member of the 12-spanner drug:H(+) antiporter DHA1 family; involved in efflux of fluconazole, diazaborine, benomyl, methotrexate, and other drugs; expression induced in cells treated with the mycotoxin patulin; relocalizes from nucleus to plasma membrane upon DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 10903515]; GO_function: GO:0015238 - drug transmembrane transporter activity [Evidence IEA]; GO_function: GO:0015244 - fluconazole transporter activity [Evidence ISS] [PMID 9235926]; GO_process: GO:0006855 - drug transmembrane transport [Evidence IGI,IMP] [PMID 10572257]; GO_process: GO:0006855 - drug transmembrane transport [Evidence IGI] [PMID 9235926]; GO_process: GO:0015893 - drug transport [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence ISS] [PMID 9235926]; GO_process: GO:0006810 - transport [Evidence IEA]; Flr1p 1700847 FLR1 30034468 FLR1 Sugiyamaella lignohabitans Flr1p XP_018737405.1 1699336 R 796027 CDS AWJ20_2546 30034469 1704080..1706479 B 1 NC_031674.1 Transcription factor for thiamine-regulated genes; required for expression of the two isoforms of pyruvate decarboxylase (PDC1 and PDC5) along with thiamine biosynthetic genes; binds a DNA sequence in the PDC5 promoter; mutant fails to grow on 2% glucose and thus is scored as inviable under standard conditions; GO_component: GO:0005634 - nucleus [Evidence IC] [PMID 22404710]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0000978 - RNA polymerase II core promoter proximal region sequence-specific DNA binding [Evidence IDA] [PMID 22404710]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_process: GO:2001172 - positive regulation of glucose catabolic process to ethanol [Evidence IMP] [PMID 8264540]; GO_process: GO:0090180 - positive regulation of thiamine biosynthetic process [Evidence IGI,IMP] [PMID 16850348]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IDA] [PMID 19013460]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 8264540]; Pdc2p 1706479 PDC2 30034469 PDC2 Sugiyamaella lignohabitans Pdc2p XP_018737406.1 1704080 D 796027 CDS AWJ20_2547 30034470 1710523..1711719 B 1 NC_031674.1 FG-nucleoporin NUP57 1711719 NUP57 30034470 NUP57 Sugiyamaella lignohabitans FG-nucleoporin NUP57 XP_018737407.1 1710523 D 796027 CDS AWJ20_2548 30034471 1713568..1713879 B 1 NC_031674.1 Alpha 7 subunit of the 20S proteasome; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IC] [PMID 9087403]; GO_component: GO:0042175 - nuclear outer membrane-endoplasmic reticulum membrane network [Evidence IC] [PMID 9087403]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IC] [PMID 9087403]; GO_component: GO:0000502 - proteasome complex [Evidence IEA]; GO_component: GO:0005839 - proteasome core complex [Evidence IEA]; GO_component: GO:0019773 - proteasome core complex, alpha-subunit complex [Evidence IEA]; GO_component: GO:0019773 - proteasome core complex, alpha-subunit complex [Evidence IDA] [PMID 9087403]; GO_component: GO:0034515 - proteasome storage granule [Evidence IDA] [PMID 18504300]; GO_function: GO:0004175 - endopeptidase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 21124907]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_function: GO:0004298 - threonine-type endopeptidase activity [Evidence IEA,IEA]; GO_process: GO:0010499 - proteasomal ubiquitin-independent protein catabolic process [Evidence IDA] [PMID 19162040]; GO_process: GO:0043161 - proteasome-mediated ubiquitin-dependent protein catabolic process [Evidence IDA] [PMID 11545745]; GO_process: GO:0043161 - proteasome-mediated ubiquitin-dependent protein catabolic process [Evidence IDA] [PMID 19029916]; GO_process: GO:0006508 - proteolysis [Evidence IEA]; GO_process: GO:0051603 - proteolysis involved in cellular protein catabolic process [Evidence IEA]; GO_process: GO:0006511 - ubiquitin-dependent protein catabolic process [Evidence IEA]; proteasome core particle subunit alpha 7 1713879 PRE10 30034471 PRE10 Sugiyamaella lignohabitans proteasome core particle subunit alpha 7 XP_018737408.1 1713568 D 796027 CDS AWJ20_2549 30034472 complement(1715065..1717728) B 1 NC_031674.1 Multifunctional enzyme containing phosphoribosyl-ATP pyrophosphatase; phosphoribosyl-AMP cyclohydrolase, and histidinol dehydrogenase activities; catalyzes the second, third, ninth and tenth steps in histidine biosynthesis; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0051287 - NAD binding [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0004399 - histidinol dehydrogenase activity [Evidence IEA,IEA]; GO_function: GO:0004399 - histidinol dehydrogenase activity [Evidence IDA] [PMID 379004]; GO_function: GO:0004399 - histidinol dehydrogenase activity [Evidence IMP] [PMID 5919326]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0004635 - phosphoribosyl-AMP cyclohydrolase activity [Evidence IEA,IEA]; GO_function: GO:0004635 - phosphoribosyl-AMP cyclohydrolase activity [Evidence IDA] [PMID 379004]; GO_function: GO:0004635 - phosphoribosyl-AMP cyclohydrolase activity [Evidence IMP] [PMID 5919326]; GO_function: GO:0004636 - phosphoribosyl-ATP diphosphatase activity [Evidence IEA,IEA]; GO_function: GO:0004636 - phosphoribosyl-ATP diphosphatase activity [Evidence IDA] [PMID 379004]; GO_function: GO:0004636 - phosphoribosyl-ATP diphosphatase activity [Evidence IMP] [PMID 5919326]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0000105 - histidine biosynthetic process [Evidence IEA,IEA,IEA]; GO_process: GO:0000105 - histidine biosynthetic process [Evidence IMP] [PMID 14190241]; GO_process: GO:0000105 - histidine biosynthetic process [Evidence IMP] [PMID 5919326]; GO_process: GO:0008152 - metabolic process [Evidence IEA,IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; trifunctional histidinol dehydrogenase/phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase 1717728 HIS4 30034472 HIS4 Sugiyamaella lignohabitans trifunctional histidinol dehydrogenase/phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase XP_018737409.1 1715065 R 796027 CDS AWJ20_2550 30034474 1715834..1716067 B 1 NC_031674.1 uncharacterized protein 1716067 30034474 AWJ20_2550 Sugiyamaella lignohabitans uncharacterized protein XP_018737410.1 1715834 D 796027 CDS AWJ20_2551 30034475 complement(1718748..1721588) B 1 NC_031674.1 uncharacterized protein 1721588 30034475 AWJ20_2551 Sugiyamaella lignohabitans uncharacterized protein XP_018737411.1 1718748 R 796027 CDS AWJ20_2552 30034476 complement(1724671..1725708) B 1 NC_031674.1 Monomeric glyoxalase I; catalyzes the detoxification of methylglyoxal (a by-product of glycolysis) via condensation with glutathione to produce S-D-lactoylglutathione; expression regulated by methylglyoxal levels and osmotic stress; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0004462 - lactoylglutathione lyase activity [Evidence IEA,IEA]; GO_function: GO:0004462 - lactoylglutathione lyase activity [Evidence IGI] [PMID 8824231]; GO_function: GO:0016829 - lyase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA,IEA]; GO_process: GO:0006749 - glutathione metabolic process [Evidence IGI] [PMID 8824231]; GO_process: GO:0019243 - methylglyoxal catabolic process to D-lactate [Evidence IDA] [PMID 8824231]; lactoylglutathione lyase GLO1 1725708 GLO1 30034476 GLO1 Sugiyamaella lignohabitans lactoylglutathione lyase GLO1 XP_018737412.1 1724671 R 796027 CDS AWJ20_2553 30034477 complement(1732247..1733503) B 1 NC_031674.1 Ca2+-dependent cysteine protease; may cleave specific substrates during the stress response; regulates apoptosis upon H2O2 treatment; required for clearance of insoluble protein aggregates during normal growth; implicated in cell cycle dynamics and lifespan extension; undergoes autocatalytic processing; similar to mammalian metacaspases, but exists as a monomer due to an extra pair of anti-parallel beta-strands that block potential dimerization; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 24855027]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 12062425]; GO_function: GO:0004198 - calcium-dependent cysteine-type endopeptidase activity [Evidence IDA,IMP] [PMID 22761449]; GO_function: GO:0004197 - cysteine-type endopeptidase activity [Evidence IEA]; GO_function: GO:0008234 - cysteine-type peptidase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_process: GO:0006915 - apoptotic process [Evidence IEA]; GO_process: GO:0006915 - apoptotic process [Evidence IDA] [PMID 11983181]; GO_process: GO:0006915 - apoptotic process [Evidence IMP] [PMID 16170310]; GO_process: GO:0006915 - apoptotic process [Evidence IMP] [PMID 16301538]; GO_process: GO:0006515 - misfolded or incompletely synthesized protein catabolic process [Evidence IMP] [PMID 20624963]; GO_process: GO:0006508 - proteolysis [Evidence IEA,IEA]; Ca(2+)-dependent cysteine protease MCA1 1733503 MCA1 30034477 MCA1 Sugiyamaella lignohabitans Ca(2+)-dependent cysteine protease MCA1 XP_018737413.1 1732247 R 796027 CDS AWJ20_2554 30034478 1734417..1737725 B 1 NC_031674.1 Translation initiation factor eIF4G; subunit of the mRNA cap-binding protein complex (eIF4F) that also contains eIF4E (Cdc33p); interacts with Pab1p and with eIF4A (Tif1p); also has a role in biogenesis of the large ribosomal subunit; TIF4631 has a paralog, TIF4632, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 21925384]; GO_component: GO:0000932 - cytoplasmic mRNA processing body [Evidence IDA] [PMID 23222640]; GO_component: GO:0010494 - cytoplasmic stress granule [Evidence IDA] [PMID 17908917]; GO_component: GO:0010494 - cytoplasmic stress granule [Evidence IDA] [PMID 18981231]; GO_component: GO:0016281 - eukaryotic translation initiation factor 4F complex [Evidence IGI,IMP,ISS] [PMID 8336723]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0003723 - RNA binding [Evidence IEA,IEA]; GO_function: GO:0003723 - RNA binding [Evidence IDA] [PMID 12810920]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_function: GO:0003743 - translation initiation factor activity [Evidence IEA]; GO_function: GO:0003743 - translation initiation factor activity [Evidence TAS] [PMID 9841679]; GO_process: GO:0006417 - regulation of translation [Evidence IEA]; GO_process: GO:0042273 - ribosomal large subunit biogenesis [Evidence IMP] [PMID 19806183]; GO_process: GO:0034063 - stress granule assembly [Evidence IMP] [PMID 18981231]; GO_process: GO:0006412 - translation [Evidence IEA]; GO_process: GO:0006413 - translational initiation [Evidence IEA]; GO_process: GO:0006413 - translational initiation [Evidence IMP] [PMID 12810920]; Tif4631p 1737725 TIF4631 30034478 TIF4631 Sugiyamaella lignohabitans Tif4631p XP_018737414.1 1734417 D 796027 CDS AWJ20_2555 30034479 join(1740781..1741927,1743211..1743707) B 1 NC_031674.1 ATPase of the 19S regulatory particle of the 26S proteasome; one of six ATPases of the regulatory particle; involved in the degradation of ubiquitinated substrates; bound by ubiquitin-protein ligases Ubr1p and Ufd4p; localized mainly to the nucleus throughout the cell cycle; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 10419517]; GO_component: GO:0000502 - proteasome complex [Evidence IEA]; GO_component: GO:0008540 - proteasome regulatory particle, base subcomplex [Evidence IDA] [PMID 11742986]; GO_component: GO:0008540 - proteasome regulatory particle, base subcomplex [Evidence IDA] [PMID 9741626]; GO_component: GO:0034515 - proteasome storage granule [Evidence IDA] [PMID 18504300]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016887 - ATPase activity [Evidence ISS] [PMID 9287326]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_function: GO:0019904 - protein domain specific binding [Evidence IDA] [PMID 7870180]; GO_process: GO:0006338 - chromatin remodeling [Evidence IMP] [PMID 20855529]; GO_process: GO:0043433 - negative regulation of sequence-specific DNA binding transcription factor activity [Evidence IMP] [PMID 17167105]; GO_process: GO:0070651 - nonfunctional rRNA decay [Evidence IMP] [PMID 22505030]; GO_process: GO:0006289 - nucleotide-excision repair [Evidence IGI] [PMID 11410533]; GO_process: GO:0045899 - positive regulation of RNA polymerase II transcriptional preinitiation complex assembly [Evidence IGI] [PMID 16269334]; GO_process: GO:0045899 - positive regulation of RNA polymerase II transcriptional preinitiation complex assembly [Evidence IMP] [PMID 19843524]; GO_process: GO:0051091 - positive regulation of sequence-specific DNA binding transcription factor activity [Evidence IMP] [PMID 16269334]; GO_process: GO:0032968 - positive regulation of transcription elongation from RNA polymerase II promoter [Evidence IMP] [PMID 11389845]; GO_process: GO:0070682 - proteasome regulatory particle assembly [Evidence IMP] [PMID 19412160]; GO_process: GO:0043161 - proteasome-mediated ubiquitin-dependent protein catabolic process [Evidence IPI] [PMID 10688918]; GO_process: GO:0030163 - protein catabolic process [Evidence IEA]; proteasome regulatory particle base subunit RPT6 1743707 RPT6 30034479 RPT6 Sugiyamaella lignohabitans proteasome regulatory particle base subunit RPT6 XP_018737415.1 1740781 D 796027 CDS AWJ20_2556 30034480 complement(1742936..1743892) B 1 NC_031674.1 histone acetyltransferase YNG2 1743892 YNG2 30034480 YNG2 Sugiyamaella lignohabitans histone acetyltransferase YNG2 XP_018737416.1 1742936 R 796027 CDS AWJ20_2557 30034481 complement(1744521..1746839) B 1 NC_031674.1 uncharacterized protein 1746839 30034481 AWJ20_2557 Sugiyamaella lignohabitans uncharacterized protein XP_018737417.1 1744521 R 796027 CDS AWJ20_2558 30034482 1747971..1750505 B 1 NC_031674.1 Adaptor protein involved in vesicle-mediated vacuolar protein sorting; multivalent adaptor protein; facilitates vesicle-mediated vacuolar protein sorting by ensuring high-fidelity vesicle docking and fusion, which are essential for targeting of vesicles to the endosome; required for vacuole inheritance; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 9168472]; GO_component: GO:0010009 - cytoplasmic side of endosome membrane [Evidence IDA] [PMID 9168472]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA,IEA]; GO_function: GO:0032266 - phosphatidylinositol-3-phosphate binding [Evidence IDA] [PMID 9702203]; GO_process: GO:0006895 - Golgi to endosome transport [Evidence IMP] [PMID 9168472]; GO_process: GO:0006895 - Golgi to endosome transport [Evidence IGI] [PMID 9335586]; GO_process: GO:0006896 - Golgi to vacuole transport [Evidence IGI,IPI] [PMID 10021387]; GO_process: GO:0000011 - vacuole inheritance [Evidence IMP] [PMID 1493335]; GO_process: GO:0006904 - vesicle docking involved in exocytosis [Evidence IMP] [PMID 9168472]; GO_process: GO:0006906 - vesicle fusion [Evidence IMP] [PMID 9168472]; Pep7p 1750505 PEP7 30034482 PEP7 Sugiyamaella lignohabitans Pep7p XP_018737418.1 1747971 D 796027 CDS AWJ20_2559 30034483 complement(1751991..1753004) B 1 NC_031674.1 Ferrochelatase; a mitochondrial inner membrane protein, catalyzes the insertion of ferrous iron into protoporphyrin IX, the eighth and final step in the heme biosynthetic pathway; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IDA] [PMID 7629135]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0004325 - ferrochelatase activity [Evidence IEA,IEA]; GO_function: GO:0004325 - ferrochelatase activity [Evidence IDA] [PMID 1304908]; GO_function: GO:0004325 - ferrochelatase activity [Evidence IMP] [PMID 2185242]; GO_function: GO:0016829 - lyase activity [Evidence IEA]; GO_process: GO:0006783 - heme biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0006783 - heme biosynthetic process [Evidence IMP] [PMID 7035824]; GO_process: GO:0006779 - porphyrin-containing compound biosynthetic process [Evidence IEA]; ferrochelatase HEM15 1753004 HEM15 30034483 HEM15 Sugiyamaella lignohabitans ferrochelatase HEM15 XP_018737419.1 1751991 R 796027 CDS AWJ20_2560 30034485 1754427..1755818 B 1 NC_031674.1 Broad-specificity lysophospholipid acyltransferase; part of MBOAT family of membrane-bound O-acyltransferases; key component of Lands cycle; may have role in fatty acid exchange at sn-2 position of mature glycerophospholipids; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 14562095]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 17890783]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0043231 - intracellular membrane-bounded organelle [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0031090 - organelle membrane [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IDA] [PMID 16702403]; GO_function: GO:0003841 - 1-acylglycerol-3-phosphate O-acyltransferase activity [Evidence IEA]; GO_function: GO:0003841 - 1-acylglycerol-3-phosphate O-acyltransferase activity [Evidence IGI,IMP] [PMID 17675291]; GO_function: GO:0003841 - 1-acylglycerol-3-phosphate O-acyltransferase activity [Evidence IMP] [PMID 17726007]; GO_function: GO:0047184 - 1-acylglycerophosphocholine O-acyltransferase activity [Evidence IEA]; GO_function: GO:0047184 - 1-acylglycerophosphocholine O-acyltransferase activity [Evidence IMP] [PMID 17726007]; GO_function: GO:0047184 - 1-acylglycerophosphocholine O-acyltransferase activity [Evidence IMP] [PMID 17951629]; GO_function: GO:0008374 - O-acyltransferase activity [Evidence IDA,IMP] [PMID 17890783]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016746 - transferase activity, transferring acyl groups [Evidence IEA]; GO_process: GO:0046474 - glycerophospholipid biosynthetic process [Evidence IGI,IMP] [PMID 17675291]; GO_process: GO:0046474 - glycerophospholipid biosynthetic process [Evidence IMP] [PMID 17726007]; GO_process: GO:0046474 - glycerophospholipid biosynthetic process [Evidence IMP] [PMID 17890783]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0008654 - phospholipid biosynthetic process [Evidence IEA]; Ale1p 1755818 ALE1 30034485 ALE1 Sugiyamaella lignohabitans Ale1p XP_018737420.1 1754427 D 796027 CDS AWJ20_2561 30034486 complement(1756019..1758292) B 1 NC_031674.1 Palmitoyl transferase involved in protein palmitoylation; acts as a negative regulator of pheromone response pathway; required for endocytosis of pheromone receptors; involved in cell shape control; contains ankyrin repeats; AKR1 has a paralog, AKR2, that arose from the whole genome duplication; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0005794 - Golgi apparatus [Evidence IDA] [PMID 16647879]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA]; GO_component: GO:0031901 - early endosome membrane [Evidence IEA]; GO_component: GO:0005768 - endosome [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 15632165]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IDA] [PMID 12370247]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016409 - palmitoyltransferase activity [Evidence IDA] [PMID 12370247]; GO_function: GO:0019706 - protein-cysteine S-palmitoyltransferase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016746 - transferase activity, transferring acyl groups [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0018345 - protein palmitoylation [Evidence IDA] [PMID 12370247]; GO_process: GO:0018345 - protein palmitoylation [Evidence IDA,IMP] [PMID 16227572]; GO_process: GO:0018345 - protein palmitoylation [Evidence IMP] [PMID 16751107]; GO_process: GO:0006612 - protein targeting to membrane [Evidence IMP] [PMID 16227572]; GO_process: GO:0030100 - regulation of endocytosis [Evidence IMP] [PMID 10866691]; GO_process: GO:0010969 - regulation of pheromone-dependent signal transduction involved in conjugation with cellular fusion [Evidence IGI] [PMID 8524293]; Akr1p 1758292 AKR1 30034486 AKR1 Sugiyamaella lignohabitans Akr1p XP_018737421.1 1756019 R 796027 CDS AWJ20_2562 30034487 complement(1759401..1761209) B 1 NC_031674.1 Putative transcription factor sre2 1761209 30034487 AWJ20_2562 Sugiyamaella lignohabitans Putative transcription factor sre2 XP_018737422.1 1759401 R 796027 CDS AWJ20_2563 30034488 1765986..1766345 B 1 NC_031674.1 uncharacterized protein 1766345 30034488 AWJ20_2563 Sugiyamaella lignohabitans uncharacterized protein XP_018737423.1 1765986 D 796027 CDS AWJ20_2564 30034489 1770237..1770728 B 1 NC_031674.1 Putative pyridoxal 5'-phosphate synthase; transcriptionally activated by Yrm1p along with genes involved in multidrug resistance; YPR172W has a paralog, YLR456W, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0010181 - FMN binding [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0004733 - pyridoxamine-phosphate oxidase activity [Evidence IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; GO_process: GO:0042823 - pyridoxal phosphate biosynthetic process [Evidence IEA]; pyridoxal 5'-phosphate synthase 1770728 30034489 AWJ20_2564 Sugiyamaella lignohabitans pyridoxal 5'-phosphate synthase XP_018737424.1 1770237 D 796027 CDS AWJ20_2565 30034490 complement(1771040..1771543) B 1 NC_031674.1 Subunit of the GINS complex (Sld5p, Psf1p, Psf2p, Psf3p); complex is localized to DNA replication origins and implicated in assembly of the DNA replication machinery; GO_component: GO:0031261 - DNA replication preinitiation complex [Evidence IPI] [PMID 12730134]; GO_component: GO:0000811 - GINS complex [Evidence IPI] [PMID 12730134]; GO_component: GO:0000811 - GINS complex [Evidence IPI] [PMID 12768207]; GO_component: GO:0043596 - nuclear replication fork [Evidence IDA] [PMID 16103218]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 15282802]; GO_component: GO:0031298 - replication fork protection complex [Evidence IDA] [PMID 16531994]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006260 - DNA replication [Evidence IEA,IEA]; GO_process: GO:0006261 - DNA-dependent DNA replication [Evidence IGI] [PMID 12730134]; GO_process: GO:0006261 - DNA-dependent DNA replication [Evidence IMP] [PMID 12768207]; GO_process: GO:0000727 - double-strand break repair via break-induced replication [Evidence IMP] [PMID 20516198]; Psf2p 1771543 PSF2 30034490 PSF2 Sugiyamaella lignohabitans Psf2p XP_018737425.1 1771040 R 796027 CDS AWJ20_2566 30034491 1772970..1774337 B 1 NC_031674.1 Acetylglutamate synthase (glutamate N-acetyltransferase); mitochondrial enzyme that catalyzes the first step in the biosynthesis of the arginine precursor ornithine; forms a complex with Arg5,6p; GO_component: GO:0005759 - mitochondrial matrix [Evidence IDA] [PMID 205532]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_function: GO:0004042 - acetyl-CoA:L-glutamate N-acetyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0004042 - acetyl-CoA:L-glutamate N-acetyltransferase activity [Evidence IDA,IMP] [PMID 11553611]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016746 - transferase activity, transferring acyl groups [Evidence IEA]; GO_process: GO:0006526 - arginine biosynthetic process [Evidence IEA]; GO_process: GO:0006526 - arginine biosynthetic process [Evidence TAS] [PMID 11553611]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0006592 - ornithine biosynthetic process [Evidence IMP] [PMID 11553611]; acetyl-CoA:L-glutamate N-acetyltransferase 1774337 ARG2 30034491 ARG2 Sugiyamaella lignohabitans acetyl-CoA:L-glutamate N-acetyltransferase XP_018737426.1 1772970 D 796027 CDS AWJ20_2567 30034492 complement(1774859..1776016) B 1 NC_031674.1 AAA-ATPase involved in multivesicular body (MVB) protein sorting; ATP-bound Vps4p localizes to endosomes and catalyzes ESCRT-III disassembly and membrane release; ATPase activity is activated by Vta1p; regulates cellular sterol metabolism; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 11914276]; GO_component: GO:0005768 - endosome [Evidence IEA]; GO_component: GO:0005768 - endosome [Evidence IDA] [PMID 9606181]; GO_component: GO:0010008 - endosome membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IDA] [PMID 16601096]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0005524 - ATP binding [Evidence IDA,IMP] [PMID 9606181]; GO_function: GO:0016887 - ATPase activity [Evidence IDA] [PMID 16505166]; GO_function: GO:0016887 - ATPase activity [Evidence IDA,IMP] [PMID 9155008]; GO_function: GO:0016887 - ATPase activity [Evidence IDA] [PMID 9606181]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_function: GO:0042803 - protein homodimerization activity [Evidence IDA] [PMID 18266866]; GO_process: GO:0070676 - intralumenal vesicle formation [Evidence IMP] [PMID 19234443]; GO_process: GO:0045324 - late endosome to vacuole transport [Evidence IMP] [PMID 9211789]; GO_process: GO:0045324 - late endosome to vacuole transport [Evidence IMP,IPI] [PMID 9606181]; GO_process: GO:0032511 - late endosome to vacuole transport via multivesicular body sorting pathway [Evidence IMP] [PMID 16505166]; GO_process: GO:0051260 - protein homooligomerization [Evidence IDA] [PMID 9606181]; GO_process: GO:0045053 - protein retention in Golgi apparatus [Evidence IMP] [PMID 8649377]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0016125 - sterol metabolic process [Evidence IGI,IMP] [PMID 16096648]; GO_process: GO:0006810 - transport [Evidence IEA]; AAA family ATPase VPS4 1776016 VPS4 30034492 VPS4 Sugiyamaella lignohabitans AAA family ATPase VPS4 XP_018737427.1 1774859 R 796027 CDS AWJ20_2568 30034493 1775481..1775816 B 1 NC_031674.1 uncharacterized protein 1775816 30034493 AWJ20_2568 Sugiyamaella lignohabitans uncharacterized protein XP_018737428.1 1775481 D 796027 CDS AWJ20_2569 30034494 complement(1776995..1777567) B 1 NC_031674.1 uncharacterized protein 1777567 30034494 AWJ20_2569 Sugiyamaella lignohabitans uncharacterized protein XP_018737429.1 1776995 R 796027 CDS AWJ20_2570 30034496 complement(1780143..1781909) B 1 NC_031674.1 Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is processed to make a nucleocapsid-like protein (Gag), reverse transcriptase (RT), protease (PR), and integrase (IN); similar to retroviral genes; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9448009]; GO_component: GO:0000943 - retrotransposon nucleocapsid [Evidence ISS] [PMID 9582191]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA,IEA]; GO_function: GO:0003887 - DNA-directed DNA polymerase activity [Evidence ISS] [PMID 9582191]; GO_function: GO:0003723 - RNA binding [Evidence IEA,IEA]; GO_function: GO:0003723 - RNA binding [Evidence ISS] [PMID 9582191]; GO_function: GO:0004523 - RNA-DNA hybrid ribonuclease activity [Evidence IEA]; GO_function: GO:0003964 - RNA-directed DNA polymerase activity [Evidence IEA,IEA]; GO_function: GO:0003964 - RNA-directed DNA polymerase activity [Evidence ISS] [PMID 9582191]; GO_function: GO:0004190 - aspartic-type endopeptidase activity [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0004519 - endonuclease activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004518 - nuclease activity [Evidence IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016779 - nucleotidyltransferase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence ISS] [PMID 9582191]; GO_function: GO:0004540 - ribonuclease activity [Evidence ISS] [PMID 9582191]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0015074 - DNA integration [Evidence IEA,IEA]; GO_process: GO:0006310 - DNA recombination [Evidence IEA]; GO_process: GO:0006261 - DNA-dependent DNA replication [Evidence IEA,IEA]; GO_process: GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic [Evidence IEA]; GO_process: GO:0006278 - RNA-dependent DNA replication [Evidence IEA,IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0090305 - nucleic acid phosphodiester bond hydrolysis [Evidence IEA]; GO_process: GO:0006508 - proteolysis [Evidence IEA]; GO_process: GO:0032196 - transposition [Evidence IEA]; GO_process: GO:0032197 - transposition, RNA-mediated [Evidence ISS] [PMID 9582191]; GO_process: GO:0019076 - viral release from host cell [Evidence IEA]; gag-pol fusion protein 1781909 30034496 AWJ20_2570 Sugiyamaella lignohabitans gag-pol fusion protein XP_018737430.1 1780143 R 796027 CDS AWJ20_2572 30034498 1784134..1785975 B 1 NC_031674.1 Subunit of the exocyst complex; the exocyst mediates polarized targeting and tethering of post-Golgi secretory vesicles to active sites of exocytosis prior to SNARE-mediated fusion; PtdIns[4,5]P2-binding protein that localizes to exocytic sites in an actin-independent manner, targeting and anchoring the exocyst with Sec3p; involved in exocyst assembly; direct downstream effector of Rho3p and Cdc42p; relocalizes from bud neck to cytoplasm upon DNA replication stress; GO_component: GO:0005933 - cellular bud [Evidence IEA]; GO_component: GO:0005935 - cellular bud neck [Evidence IEA]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 18946089]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 22842922]; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 10207081]; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 17717527]; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 18946089]; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 22842922]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0000145 - exocyst [Evidence IEA]; GO_component: GO:0000145 - exocyst [Evidence IDA] [PMID 8978675]; GO_component: GO:0000131 - incipient cellular bud site [Evidence IDA] [PMID 18195105]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 19053807]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 17717527]; GO_component: GO:0005628 - prospore membrane [Evidence IDA] [PMID 24390141]; GO_function: GO:0017049 - GTP-Rho binding [Evidence IPI] [PMID 10207081]; GO_function: GO:0017049 - GTP-Rho binding [Evidence IDA] [PMID 10588647]; GO_function: GO:0017049 - GTP-Rho binding [Evidence IPI] [PMID 19955214]; GO_function: GO:0005546 - phosphatidylinositol-4,5-bisphosphate binding [Evidence IDA] [PMID 17717527]; GO_process: GO:0006893 - Golgi to plasma membrane transport [Evidence IMP] [PMID 17339375]; GO_process: GO:0007266 - Rho protein signal transduction [Evidence IDA,IGI,IPI] [PMID 19955214]; GO_process: GO:0001927 - exocyst assembly [Evidence IMP] [PMID 15583030]; GO_process: GO:0001927 - exocyst assembly [Evidence IMP] [PMID 18946089]; GO_process: GO:0051601 - exocyst localization [Evidence IGI] [PMID 17717527]; GO_process: GO:0051601 - exocyst localization [Evidence IGI] [PMID 18946089]; GO_process: GO:0006887 - exocytosis [Evidence IEA,IEA]; GO_process: GO:0006887 - exocytosis [Evidence IGI] [PMID 15583030]; GO_process: GO:0006887 - exocytosis [Evidence IMP] [PMID 17339375]; GO_process: GO:0006887 - exocytosis [Evidence IGI] [PMID 17717527]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0090522 - vesicle tethering involved in exocytosis [Evidence IC] [PMID 8978675]; Exo70p 1785975 EXO70 30034498 EXO70 Sugiyamaella lignohabitans Exo70p XP_018737431.1 1784134 D 796027 CDS AWJ20_2574 30034500 1789722..1791206 B 1 NC_031674.1 Subunit of a Golgi mannosyltransferase complex; this complex also contains Anp1p, Mnn9p, Mnn10p, and Hoc1p, and mediates elongation of the polysaccharide mannan backbone; has homology to Mnn10p; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA,IEA]; GO_component: GO:0000136 - alpha-1,6-mannosyltransferase complex [Evidence IPI] [PMID 9430634]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0000009 - alpha-1,6-mannosyltransferase activity [Evidence IDA] [PMID 10635561]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA]; GO_function: GO:0016758 - transferase activity, transferring hexosyl groups [Evidence IEA]; GO_process: GO:0006487 - protein N-linked glycosylation [Evidence IMP] [PMID 23210626]; GO_process: GO:0006486 - protein glycosylation [Evidence IDA,IMP] [PMID 10635561]; Mnn11p 1791206 MNN11 30034500 MNN11 Sugiyamaella lignohabitans Mnn11p XP_018737432.1 1789722 D 796027 CDS AWJ20_2575 30034501 complement(1794555..1796477) B 1 NC_031674.1 cyclin-dependent serine/threonine protein kinase SSN3 1796477 SSN3 30034501 SSN3 Sugiyamaella lignohabitans cyclin-dependent serine/threonine protein kinase SSN3 XP_018737433.1 1794555 R 796027 CDS AWJ20_2576 30034502 1798566..1800029 B 1 NC_031674.1 uncharacterized protein 1800029 30034502 AWJ20_2576 Sugiyamaella lignohabitans uncharacterized protein XP_018737434.1 1798566 D 796027 CDS AWJ20_2577 30034503 complement(1800278..1801870) B 1 NC_031674.1 GABA (gamma-aminobutyrate) permease; serves as a GABA transport protein involved in the utilization of GABA as a nitrogen source; catalyzes the transport of putrescine and delta-aminolevulinic acid (ALA); localized to the vacuolar membrane; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 14985124]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0015171 - amino acid transmembrane transporter activity [Evidence IEA]; GO_function: GO:0015495 - gamma-aminobutyric acid:proton symporter activity [Evidence IGI] [PMID 8455553]; GO_function: GO:0015489 - putrescine transmembrane transporter activity [Evidence IGI] [PMID 14985124]; GO_process: GO:0003333 - amino acid transmembrane transport [Evidence IEA]; GO_process: GO:0006865 - amino acid transport [Evidence IEA]; GO_process: GO:0015812 - gamma-aminobutyric acid transport [Evidence IGI] [PMID 14985124]; GO_process: GO:0015812 - gamma-aminobutyric acid transport [Evidence IEP,IGI] [PMID 8455553]; GO_process: GO:0015847 - putrescine transport [Evidence IGI] [PMID 14985124]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IGI] [PMID 8455553]; GO_process: GO:0006810 - transport [Evidence IEA]; Uga4p 1801870 UGA4 30034503 UGA4 Sugiyamaella lignohabitans Uga4p XP_018737435.1 1800278 R 796027 CDS AWJ20_2578 30034504 1804923..1806038 B 1 NC_031674.1 uncharacterized protein 1806038 30034504 AWJ20_2578 Sugiyamaella lignohabitans uncharacterized protein XP_018737436.1 1804923 D 796027 CDS AWJ20_2579 30034505 complement(1807163..1807957) B 1 NC_031674.1 serine/threonine protein kinase BUD32 1807957 BUD32 30034505 BUD32 Sugiyamaella lignohabitans serine/threonine protein kinase BUD32 XP_018737437.1 1807163 R 796027 CDS AWJ20_2580 30034507 1810618..1812111 B 1 NC_031674.1 Endochitinase; required for cell separation after mitosis; transcriptional activation during the G1 phase of the cell cycle is mediated by transcription factor Ace2p; GO_component: GO:0005618 - cell wall [Evidence IEA,IEA]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 11747810]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 11914276]; GO_component: GO:0005576 - extracellular region [Evidence IEA,IEA]; GO_component: GO:0005576 - extracellular region [Evidence IDA] [PMID 19129178]; GO_component: GO:0005576 - extracellular region [Evidence IDA] [PMID 1918080]; GO_component: GO:0009277 - fungal-type cell wall [Evidence IDA] [PMID 11747810]; GO_component: GO:0009277 - fungal-type cell wall [Evidence IDA] [PMID 1918080]; GO_component: GO:0005635 - nuclear envelope [Evidence IDA] [PMID 11914276]; GO_function: GO:0008061 - chitin binding [Evidence IEA]; GO_function: GO:0004568 - chitinase activity [Evidence IEA,IEA]; GO_function: GO:0008843 - endochitinase activity [Evidence IDA] [PMID 6799506]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016798 - hydrolase activity, acting on glycosyl bonds [Evidence IEA]; GO_function: GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]; GO_process: GO:0005975 - carbohydrate metabolic process [Evidence IEA,IEA]; GO_process: GO:0006032 - chitin catabolic process [Evidence IEA,IEA]; GO_process: GO:0006032 - chitin catabolic process [Evidence IC] [PMID 3033651]; GO_process: GO:0007109 - cytokinesis, completion of separation [Evidence IMP] [PMID 1918080]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0000272 - polysaccharide catabolic process [Evidence IEA]; Cts1p 1812111 CTS1 30034507 CTS1 Sugiyamaella lignohabitans Cts1p XP_018737438.1 1810618 D 796027 CDS AWJ20_2581 30034508 complement(1812193..1812972) B 1 NC_031674.1 S-adenosylmethionine-dependent methyltransferase; has a role in rDNA silencing and in lifespan determination; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity [Evidence IDA] [PMID 21858014]; GO_function: GO:0008168 - methyltransferase activity [Evidence IEA]; GO_function: GO:0008112 - nicotinamide N-methyltransferase activity [Evidence IEA]; GO_function: GO:0008112 - nicotinamide N-methyltransferase activity [Evidence ISS] [PMID 12736687]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0000183 - chromatin silencing at rDNA [Evidence IMP] [PMID 12736687]; GO_process: GO:0032259 - methylation [Evidence IEA]; GO_process: GO:0006769 - nicotinamide metabolic process [Evidence ISS] [PMID 12736687]; GO_process: GO:0006769 - nicotinamide metabolic process [Evidence IGI] [PMID 14724176]; Nnt1p 1812972 NNT1 30034508 NNT1 Sugiyamaella lignohabitans Nnt1p XP_018737439.1 1812193 R 796027 CDS AWJ20_2582 30034509 1813566..1814735 B 1 NC_031674.1 Para hydroxybenzoate polyprenyl transferase; catalyzes the second step in ubiquinone (coenzyme Q) biosynthesis; human COQ2, mutations in which are implicated in an increased risk of mutiple-system atrophy, is able to complement a yeast coq2 null mutant; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0032592 - integral component of mitochondrial membrane [Evidence IDA] [PMID 359053]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 10469659]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 1740455]; GO_function: GO:0002083 - 4-hydroxybenzoate decaprenyltransferase activity [Evidence IEA]; GO_function: GO:0047293 - 4-hydroxybenzoate nonaprenyltransferase activity [Evidence IEA]; GO_function: GO:0008412 - 4-hydroxybenzoate octaprenyltransferase activity [Evidence IMP] [PMID 1740455]; GO_function: GO:0008412 - 4-hydroxybenzoate octaprenyltransferase activity [Evidence IGI] [PMID 7765507]; GO_function: GO:0008412 - 4-hydroxybenzoate octaprenyltransferase activity [Evidence ISS] [PMID 8155731]; GO_function: GO:0004659 - prenyltransferase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0009058 - biosynthetic process [Evidence IEA]; GO_process: GO:0008299 - isoprenoid biosynthetic process [Evidence IEA]; GO_process: GO:0006744 - ubiquinone biosynthetic process [Evidence IEA,IEA,IEA]; GO_process: GO:0006744 - ubiquinone biosynthetic process [Evidence IGI] [PMID 15548532]; GO_process: GO:0006744 - ubiquinone biosynthetic process [Evidence IMP] [PMID 1740455]; 4-hydroxybenzoate octaprenyltransferase 1814735 COQ2 30034509 COQ2 Sugiyamaella lignohabitans 4-hydroxybenzoate octaprenyltransferase XP_018737440.1 1813566 D 796027 CDS AWJ20_2583 30034510 complement(1815009..1815692) B 1 NC_031674.1 Protein required for biogenesis of the large ribosomal subunit; required for biogenesis of the large ribosomal subunit; interacts with proteins involved in RNA processing, ribosome biogenesis, ubiquitination and demethylation; similar to WDR55, a human WD repeat protein; essential gene; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 14690591]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14690591]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0042273 - ribosomal large subunit biogenesis [Evidence IMP] [PMID 19806183]; Jip5p 1815692 JIP5 30034510 JIP5 Sugiyamaella lignohabitans Jip5p XP_018737441.1 1815009 R 796027 CDS AWJ20_2584 30034511 complement(1816731..1817330) B 1 NC_031674.1 uncharacterized protein 1817330 30034511 AWJ20_2584 Sugiyamaella lignohabitans uncharacterized protein XP_018737442.1 1816731 R 796027 CDS AWJ20_2585 30034512 complement(1818139..1819827) B 1 NC_031674.1 Polyamine transporter of the major facilitator superfamily; member of the 12-spanner drug:H(+) antiporter DHA1 family; recognizes spermine, putrescine, and spermidine; catalyzes uptake of polyamines at alkaline pH and excretion at acidic pH; during oxidative stress exports spermine, spermidine from the cell, which controls timing of expression of stress-responsive genes; phosphorylation enhances activity and sorting to the plasma membrane; GO_component: GO:0033101 - cellular bud membrane [Evidence IDA] [PMID 13679573]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IMP] [PMID 11171066]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 12562762]; GO_component: GO:0005886 - plasma membrane [Evidence IDA,IMP] [PMID 15637075]; GO_function: GO:0015297 - antiporter activity [Evidence IEA]; GO_function: GO:0015606 - spermidine transmembrane transporter activity [Evidence IMP] [PMID 11171066]; GO_function: GO:0015606 - spermidine transmembrane transporter activity [Evidence IDA,IMP] [PMID 15637075]; GO_function: GO:0000297 - spermine transmembrane transporter activity [Evidence IMP] [PMID 11171066]; GO_function: GO:0000297 - spermine transmembrane transporter activity [Evidence IDA,IMP] [PMID 15637075]; GO_function: GO:0000297 - spermine transmembrane transporter activity [Evidence IMP] [PMID 9920864]; GO_process: GO:1902047 - polyamine transmembrane transport [Evidence IMP] [PMID 24136413]; GO_process: GO:0015847 - putrescine transport [Evidence IMP] [PMID 9920864]; GO_process: GO:0015848 - spermidine transport [Evidence IMP] [PMID 11171066]; GO_process: GO:0015848 - spermidine transport [Evidence IDA,IMP] [PMID 15637075]; GO_process: GO:0015848 - spermidine transport [Evidence IMP] [PMID 9920864]; GO_process: GO:0000296 - spermine transport [Evidence IMP] [PMID 11171066]; GO_process: GO:0000296 - spermine transport [Evidence IDA,IMP] [PMID 15637075]; GO_process: GO:0000296 - spermine transport [Evidence IMP] [PMID 9920864]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Tpo1p 1819827 TPO1 30034512 TPO1 Sugiyamaella lignohabitans Tpo1p XP_018737443.1 1818139 R 796027 CDS AWJ20_2586 30034513 complement(1820409..1821365) B 1 NC_031674.1 TFIID subunit (48 kDa); involved in RNA polymerase II transcription initiation; potential Cdc28p substrate; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005669 - transcription factor TFIID complex [Evidence IEA]; GO_component: GO:0005669 - transcription factor TFIID complex [Evidence IDA] [PMID 10788514]; GO_component: GO:0005669 - transcription factor TFIID complex [Evidence IDA] [PMID 15448131]; GO_function: GO:0001102 - RNA polymerase II activating transcription factor binding [Evidence IDA,IPI] [PMID 12501245]; GO_function: GO:0001075 - RNA polymerase II core promoter sequence-specific DNA binding transcription factor activity involved in preinitiation complex assembly [Evidence IC] [PMID 15448131]; GO_function: GO:0003682 - chromatin binding [Evidence IDA] [PMID 12600943]; GO_process: GO:0006352 - DNA-templated transcription, initiation [Evidence IEA]; GO_process: GO:0051123 - RNA polymerase II transcriptional preinitiation complex assembly [Evidence IC] [PMID 10788514]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IDA] [PMID 12138208]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IDA] [PMID 15448131]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Taf4p 1821365 TAF4 30034513 TAF4 Sugiyamaella lignohabitans Taf4p XP_018737444.1 1820409 R 796027 CDS AWJ20_2587 30034514 1822861..1823445 B 1 NC_031674.1 Endonuclease that cleaves pre-rRNA at site A2 for 18S rRNA biogenesis; subunit of U3-containing 90S preribosome processome complex involved in small ribosomal subunit assembly; stimulates Bms1p GTPase and U3 binding activity; similar to RNA cyclase-like proteins but no cyclase activity detected; GO_component: GO:0030686 - 90S preribosome [Evidence IDA] [PMID 12150911]; GO_component: GO:0005730 - nucleolus [Evidence IEA,IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 10790377]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_function: GO:0003963 - RNA-3'-phosphate cyclase activity [Evidence ISS] [PMID 10790377]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0004521 - endoribonuclease activity [Evidence IDA] [PMID 21849504]; GO_function: GO:0008047 - enzyme activator activity [Evidence IDA] [PMID 16307926]; GO_process: GO:0006396 - RNA processing [Evidence IEA]; GO_process: GO:0000480 - endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 10790377]; GO_process: GO:0000447 - endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 10790377]; GO_process: GO:0000472 - endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 10790377]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA,IEA]; Rcl1p 1823445 RCL1 30034514 RCL1 Sugiyamaella lignohabitans Rcl1p XP_018737445.1 1822861 D 796027 CDS AWJ20_2588 30034515 complement(1823929..1825791) B 1 NC_031674.1 Protein required for sorting proteins to the vacuole; Mvp1p and Vps1p act in concert to promote membrane traffic to the vacuole; participates in transcription initiation and/or early elongation of specific genes; interacts with 'foot domain' of RNA polymerase II; deletion results in abnormal CTD-Ser5 phosphorylation of RNA polymerase II at specific promoter regions; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 7862158]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 21954159]; GO_function: GO:0035091 - phosphatidylinositol binding [Evidence IEA]; GO_function: GO:0032266 - phosphatidylinositol-3-phosphate binding [Evidence IDA] [PMID 11557775]; GO_process: GO:0006623 - protein targeting to vacuole [Evidence IMP] [PMID 7862158]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Mvp1p 1825791 MVP1 30034515 MVP1 Sugiyamaella lignohabitans Mvp1p XP_018737446.1 1823929 R 796027 CDS AWJ20_2589 30034516 complement(1829369..1830607) B 1 NC_031674.1 Essential non-ATPase regulatory subunit of the 26S proteasome; similar to another S. cerevisiae regulatory subunit, Rpn5p, as well as to mammalian proteasome subunits; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 19446323]; GO_component: GO:0000502 - proteasome complex [Evidence IEA]; GO_component: GO:0008541 - proteasome regulatory particle, lid subcomplex [Evidence IDA] [PMID 9741626]; GO_function: GO:0005198 - structural molecule activity [Evidence IMP] [PMID 15102831]; GO_process: GO:0006511 - ubiquitin-dependent protein catabolic process [Evidence TAS] [PMID 8982460]; GO_process: GO:0006511 - ubiquitin-dependent protein catabolic process [Evidence TAS] [PMID 9697412]; proteasome regulatory particle lid subunit RPN7 1830607 RPN7 30034516 RPN7 Sugiyamaella lignohabitans proteasome regulatory particle lid subunit RPN7 XP_018737447.1 1829369 R 796027 CDS AWJ20_2590 30034518 1833762..1835171 B 1 NC_031674.1 Hexokinase isoenzyme 2; catalyzes phosphorylation of glucose in the cytosol; predominant hexokinase during growth on glucose; functions in the nucleus to repress expression of HXK1 and GLK1 and to induce expression of its own gene; antiapoptotic; phosphorylation/dephosphorylation at serine-14 by protein kinase Snf1p and protein phosphatase Glc7p-Reg1p regulates nucleocytoplasmic shuttling of Hxk2p; HXK2 has a paralog, HXK1, that arose from the whole genome duplication; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 11311123]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 9563516]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16962558]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11311123]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9563516]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0004396 - hexokinase activity [Evidence IEA,IEA]; GO_function: GO:0004396 - hexokinase activity [Evidence IDA] [PMID 12611889]; GO_function: GO:0004396 - hexokinase activity [Evidence IDA] [PMID 332086]; GO_function: GO:0004396 - hexokinase activity [Evidence IMP] [PMID 6341351]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016773 - phosphotransferase activity, alcohol group as acceptor [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0005975 - carbohydrate metabolic process [Evidence IEA]; GO_process: GO:0046835 - carbohydrate phosphorylation [Evidence IEA,IEA]; GO_process: GO:0032445 - fructose import [Evidence IGI] [PMID 6300872]; GO_process: GO:0006000 - fructose metabolic process [Evidence IMP] [PMID 6300872]; GO_process: GO:0046323 - glucose import [Evidence IGI] [PMID 6300872]; GO_process: GO:0006006 - glucose metabolic process [Evidence IMP] [PMID 6300872]; GO_process: GO:0006096 - glycolytic process [Evidence IEA,IEA]; GO_process: GO:0006096 - glycolytic process [Evidence IDA] [PMID 332086]; GO_process: GO:0006096 - glycolytic process [Evidence IDA,IMP] [PMID 8917466]; GO_process: GO:0019318 - hexose metabolic process [Evidence IEA]; GO_process: GO:0006013 - mannose metabolic process [Evidence IDA] [PMID 332086]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; GO_process: GO:0008361 - regulation of cell size [Evidence IMP] [PMID 12089449]; GO_process: GO:0046015 - regulation of transcription by glucose [Evidence IDA] [PMID 11311123]; GO_process: GO:0001302 - replicative cell aging [Evidence IMP] [PMID 15722108]; hexokinase 2 1835171 HXK2 30034518 HXK2 Sugiyamaella lignohabitans hexokinase 2 XP_018737448.1 1833762 D 796027 CDS AWJ20_2591 30034519 complement(1835934..1837820) B 1 NC_031674.1 Sensor of mitochondrial dysfunction; regulates the subcellular location of Rtg1p and Rtg3p, transcriptional activators of the retrograde (RTG) and TOR pathways; Rtg2p is inhibited by the phosphorylated form of Mks1p; GO_component: GO:0046695 - SLIK (SAGA-like) complex [Evidence IDA] [PMID 12446794]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 10848632]; GO_component: GO:0035327 - transcriptionally active chromatin [Evidence IDA] [PMID 12446794]; GO_function: GO:0001076 - RNA polymerase II transcription factor binding transcription factor activity [Evidence IDA,IGI,IMP] [PMID 7493987]; GO_process: GO:0035753 - maintenance of DNA trinucleotide repeats [Evidence IMP] [PMID 12399373]; GO_process: GO:0031930 - mitochondria-nucleus signaling pathway [Evidence IMP] [PMID 7493987]; GO_process: GO:0031930 - mitochondria-nucleus signaling pathway [Evidence IMP] [PMID 8422683]; GO_process: GO:1900008 - negative regulation of extrachromosomal rDNA circle accumulation involved in replicative cell aging [Evidence IMP] [PMID 15020466]; GO_process: GO:0001079 - nitrogen catabolite regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 11687605]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IDA,IGI,IMP] [PMID 7493987]; GO_process: GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 8422683]; GO_process: GO:0042991 - transcription factor import into nucleus [Evidence IMP] [PMID 10848632]; GO_process: GO:0042991 - transcription factor import into nucleus [Evidence IMP] [PMID 11076970]; Rtg2p 1837820 RTG2 30034519 RTG2 Sugiyamaella lignohabitans Rtg2p XP_018737449.1 1835934 R 796027 CDS AWJ20_2592 30034520 1842980..1844725 B 1 NC_031674.1 General amino acid permease; Gap1p senses the presence of amino acid substrates to regulate localization to the plasma membrane when needed; essential for invasive growth; GO_component: GO:0030134 - ER to Golgi transport vesicle [Evidence IDA] [PMID 12499351]; GO_component: GO:0005768 - endosome [Evidence IDA] [PMID 15039776]; GO_component: GO:0000328 - fungal-type vacuole lumen [Evidence IDA] [PMID 15039776]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0005887 - integral component of plasma membrane [Evidence IDA] [PMID 9199164]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA,IEA]; GO_component: GO:0005771 - multivesicular body [Evidence IMP] [PMID 14523026]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 15623581]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 15707981]; GO_function: GO:0015193 - L-proline transmembrane transporter activity [Evidence IGI] [PMID 14968425]; GO_function: GO:0015171 - amino acid transmembrane transporter activity [Evidence IEA]; GO_function: GO:0015171 - amino acid transmembrane transporter activity [Evidence IMP] [PMID 6759873]; GO_function: GO:0015203 - polyamine transmembrane transporter activity [Evidence IMP] [PMID 15707981]; GO_process: GO:0003333 - amino acid transmembrane transport [Evidence IEA]; GO_process: GO:0006865 - amino acid transport [Evidence IEA,IEA]; GO_process: GO:0006865 - amino acid transport [Evidence IMP] [PMID 6759873]; GO_process: GO:0015846 - polyamine transport [Evidence IMP] [PMID 15707981]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; amino acid permease GAP1 1844725 GAP1 30034520 GAP1 Sugiyamaella lignohabitans amino acid permease GAP1 XP_018737450.1 1842980 D 796027 CDS AWJ20_2593 30034521 complement(1845843..1846916) B 1 NC_031674.1 Plasma membrane low glucose sensor, regulates glucose transport; contains 12 predicted transmembrane segments and a long C-terminal tail required for induction of hexose transporters; also senses fructose and mannose; SNF3 has a paralog, RGT2, that arose from the whole genome duplication; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 2406560]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 24124599]; GO_function: GO:0005536 - glucose binding [Evidence TAS] [PMID 10477308]; GO_function: GO:0005355 - glucose transmembrane transporter activity [Evidence TAS] [PMID 10477308]; GO_function: GO:0004872 - receptor activity [Evidence TAS] [PMID 10477308]; GO_function: GO:0022891 - substrate-specific transmembrane transporter activity [Evidence IEA]; GO_function: GO:0022857 - transmembrane transporter activity [Evidence IEA]; GO_function: GO:0005215 - transporter activity [Evidence IEA]; GO_process: GO:0008643 - carbohydrate transport [Evidence IEA]; GO_process: GO:0051594 - detection of glucose [Evidence IGI,IMP] [PMID 8901598]; GO_process: GO:0015755 - fructose transport [Evidence IMP] [PMID 2046678]; GO_process: GO:0015758 - glucose transport [Evidence IMP] [PMID 2046678]; GO_process: GO:0015758 - glucose transport [Evidence IGI] [PMID 9564039]; GO_process: GO:0015761 - mannose transport [Evidence IMP] [PMID 2046678]; GO_process: GO:0045835 - negative regulation of meiosis [Evidence IMP] [PMID 18616605]; GO_process: GO:0007165 - signal transduction [Evidence TAS] [PMID 10477308]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; Snf3p 1846916 SNF3 30034521 SNF3 Sugiyamaella lignohabitans Snf3p XP_018737451.1 1845843 R 796027 CDS AWJ20_2594 30034522 complement(1850835..1852565) B 1 NC_031674.1 Alpha-isopropylmalate synthase (2-isopropylmalate synthase); the main isozyme responsible for the first step in the leucine biosynthesis pathway; LEU4 has a paralog, LEU9, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 3275644]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 11914276]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 3275644]; GO_function: GO:0003852 - 2-isopropylmalate synthase activity [Evidence IEA,IEA]; GO_function: GO:0003852 - 2-isopropylmalate synthase activity [Evidence IDA] [PMID 3275644]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0046912 - transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer [Evidence IEA]; GO_process: GO:0009082 - branched-chain amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0019752 - carboxylic acid metabolic process [Evidence IEA]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0009098 - leucine biosynthetic process [Evidence IEA,IEA,IEA]; GO_process: GO:0009098 - leucine biosynthetic process [Evidence IGI] [PMID 10790691]; 2-isopropylmalate synthase LEU4 1852565 LEU4 30034522 LEU4 Sugiyamaella lignohabitans 2-isopropylmalate synthase LEU4 XP_018737452.1 1850835 R 796027 CDS AWJ20_2595 30034523 complement(1853843..1854148) B 1 NC_031674.1 Subunit of NuA4 histone H4 acetyltransferase and SWR1 complexes; may function to antagonize silencing near telomeres; interacts directly with Swc4p; has homology to human leukemogenic protein AF9; contains a YEATS domain; GO_component: GO:0035267 - NuA4 histone acetyltransferase complex [Evidence IPI] [PMID 15485911]; GO_component: GO:0000812 - Swr1 complex [Evidence IDA] [PMID 14645854]; GO_component: GO:0000812 - Swr1 complex [Evidence IDA] [PMID 14690608]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006281 - DNA repair [Evidence IEA]; GO_process: GO:0006281 - DNA repair [Evidence IDA] [PMID 16135807]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0016568 - chromatin modification [Evidence IEA]; GO_process: GO:0006338 - chromatin remodeling [Evidence IDA] [PMID 14645854]; GO_process: GO:0006338 - chromatin remodeling [Evidence IGI,IPI] [PMID 14690608]; GO_process: GO:0006348 - chromatin silencing at telomere [Evidence IMP] [PMID 15485911]; GO_process: GO:0043486 - histone exchange [Evidence IMP] [PMID 16299513]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA,IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Yaf9p 1854148 YAF9 30034523 YAF9 Sugiyamaella lignohabitans Yaf9p XP_018737453.1 1853843 R 796027 CDS AWJ20_2596 30034524 1855719..1856294 B 1 NC_031674.1 Protein involved in retention of membrane proteins; including Sec12p, in the ER; localized to Golgi; functions as a retrieval receptor in returning membrane proteins to the ER; GO_component: GO:0030137 - COPI-coated vesicle [Evidence IDA,IMP] [PMID 11238450]; GO_component: GO:0030134 - ER to Golgi transport vesicle [Evidence IDA] [PMID 11157978]; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA]; GO_component: GO:0000324 - fungal-type vacuole [Evidence IDA] [PMID 22761830]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006888 - ER to Golgi vesicle-mediated transport [Evidence IPI] [PMID 11157978]; GO_process: GO:0006621 - protein retention in ER lumen [Evidence IMP] [PMID 8707815]; GO_process: GO:0006890 - retrograde vesicle-mediated transport, Golgi to ER [Evidence IDA,IMP] [PMID 11238450]; Rer1p 1856294 RER1 30034524 RER1 Sugiyamaella lignohabitans Rer1p XP_018737454.1 1855719 D 796027 CDS AWJ20_2597 30034525 1860879..1861172 B 1 NC_031674.1 Soluble GTPase with a role in regulation of membrane traffic; regulates potassium influx; role in membrane organization at trans-Golgi network; G protein of the Ras superfamily, similar to ADP-ribosylation factor; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA,IEA]; GO_component: GO:0005794 - Golgi apparatus [Evidence IDA] [PMID 15077113]; GO_component: GO:0005794 - Golgi apparatus [Evidence IDA] [PMID 15564045]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 15975906]; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0005802 - trans-Golgi network [Evidence IDA] [PMID 15975906]; GO_component: GO:0005802 - trans-Golgi network [Evidence IDA] [PMID 23345439]; GO_function: GO:0005525 - GTP binding [Evidence IEA,IEA]; GO_function: GO:0003924 - GTPase activity [Evidence IDA,ISS] [PMID 9388248]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0043001 - Golgi to plasma membrane protein transport [Evidence IMP] [PMID 16926193]; GO_process: GO:0006623 - protein targeting to vacuole [Evidence IMP] [PMID 12210899]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0007264 - small GTPase mediated signal transduction [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IEA]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IGI,IMP] [PMID 11840166]; Arf family GTPase ARL1 1861172 ARL1 30034525 ARL1 Sugiyamaella lignohabitans Arf family GTPase ARL1 XP_018737455.1 1860879 D 796027 CDS AWJ20_2598 30034526 1867915..1869411 B 1 NC_031674.1 Catalase A; breaks down hydrogen peroxide in the peroxisomal matrix formed by acyl-CoA oxidase (Pox1p) during fatty acid beta-oxidation; GO_component: GO:0005759 - mitochondrial matrix [Evidence IDA] [PMID 14998369]; GO_component: GO:0005782 - peroxisomal matrix [Evidence IDA] [PMID 1986244]; GO_component: GO:0005777 - peroxisome [Evidence IEA,IEA]; GO_function: GO:0004096 - catalase activity [Evidence IEA,IEA]; GO_function: GO:0004096 - catalase activity [Evidence IGI,IMP] [PMID 3897793]; GO_function: GO:0004096 - catalase activity [Evidence IDA] [PMID 9931255]; GO_function: GO:0020037 - heme binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0004601 - peroxidase activity [Evidence IEA]; GO_process: GO:0001315 - age-dependent response to reactive oxygen species [Evidence IGI,IMP] [PMID 10705040]; GO_process: GO:0042744 - hydrogen peroxide catabolic process [Evidence IEA]; GO_process: GO:0042744 - hydrogen peroxide catabolic process [Evidence IGI,IMP] [PMID 3897793]; GO_process: GO:0042744 - hydrogen peroxide catabolic process [Evidence IDA] [PMID 9931255]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0006979 - response to oxidative stress [Evidence IEA]; GO_process: GO:0000302 - response to reactive oxygen species [Evidence IMP] [PMID 15893481]; catalase A 1869411 CTA1 30034526 CTA1 Sugiyamaella lignohabitans catalase A XP_018737456.1 1867915 D 796027 CDS AWJ20_2599 30034527 1874015..1874824 B 1 NC_031674.1 XP_964639|NADPH dehydrogenase [Neurospora crassa OR74A]; NADPH dehydrogenase 1874824 30034527 AWJ20_2599 Sugiyamaella lignohabitans NADPH dehydrogenase XP_018737457.1 1874015 D 796027 CDS AWJ20_2600 30034530 1875995..1876768 B 1 NC_031674.1 Ribosomal protein 10 (rp10) of the small (40S) subunit; homologous to mammalian ribosomal protein S3A, no bacterial homolog; RPS1A has a paralog, RPS1B, that arose from the whole genome duplication; GO_component: GO:0030686 - 90S preribosome [Evidence IDA] [PMID 12150911]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0022627 - cytosolic small ribosomal subunit [Evidence IEA]; GO_component: GO:0022627 - cytosolic small ribosomal subunit [Evidence NAS] [PMID 9559554]; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA,IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IEA,IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence NAS] [PMID 9559554]; GO_process: GO:0002181 - cytoplasmic translation [Evidence NAS] [PMID 9559554]; GO_process: GO:0000462 - maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IGI] [PMID 16246728]; GO_process: GO:0006412 - translation [Evidence IEA,IEA]; ribosomal 40S subunit protein S1A 1876768 RPS1A 30034530 RPS1A Sugiyamaella lignohabitans ribosomal 40S subunit protein S1A XP_018737458.1 1875995 D 796027 CDS AWJ20_2601 30034531 1878022..1879206 B 1 NC_031674.1 Mevalonate pyrophosphate decarboxylase; essential enzyme involved in the biosynthesis of isoprenoids and sterols, including ergosterol; acts as a homodimer; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004163 - diphosphomevalonate decarboxylase activity [Evidence IEA,IEA]; GO_function: GO:0004163 - diphosphomevalonate decarboxylase activity [Evidence IDA,IMP] [PMID 15169949]; GO_function: GO:0004163 - diphosphomevalonate decarboxylase activity [Evidence IMP] [PMID 1779710]; GO_function: GO:0016829 - lyase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0019287 - isopentenyl diphosphate biosynthetic process, mevalonate pathway [Evidence IEA]; GO_process: GO:0008299 - isoprenoid biosynthetic process [Evidence IEA]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0006694 - steroid biosynthetic process [Evidence IEA]; GO_process: GO:0008202 - steroid metabolic process [Evidence IEA]; GO_process: GO:0016126 - sterol biosynthetic process [Evidence IEA]; GO_process: GO:0016126 - sterol biosynthetic process [Evidence IMP] [PMID 9244250]; diphosphomevalonate decarboxylase MVD1 1879206 MVD1 30034531 MVD1 Sugiyamaella lignohabitans diphosphomevalonate decarboxylase MVD1 XP_018737459.1 1878022 D 796027 CDS AWJ20_2602 30034532 complement(1882605..1885559) B 1 NC_031674.1 Plasma membrane H+-ATPase; pumps protons out of the cell; major regulator of cytoplasmic pH and plasma membrane potential; P2-type ATPase; Hsp30p plays a role in Pma1p regulation; interactions with Std1p appear to propagate [GAR+]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0045121 - membrane raft [Evidence IDA] [PMID 10716729]; GO_component: GO:0045121 - membrane raft [Evidence IDA] [PMID 15536122]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 11739806]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 12469340]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 16622836]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0016887 - ATPase activity [Evidence IEA]; GO_function: GO:0019829 - cation-transporting ATPase activity [Evidence IEA]; GO_function: GO:0008553 - hydrogen-exporting ATPase activity, phosphorylative mechanism [Evidence IEA]; GO_function: GO:0008553 - hydrogen-exporting ATPase activity, phosphorylative mechanism [Evidence IDA] [PMID 17912695]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA,IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_process: GO:0006754 - ATP biosynthetic process [Evidence IEA]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0006812 - cation transport [Evidence IEA]; GO_process: GO:1902600 - hydrogen ion transmembrane transport [Evidence IEA]; GO_process: GO:0006811 - ion transport [Evidence IEA]; GO_process: GO:1902906 - proteasome storage granule assembly [Evidence IMP] [PMID 23690178]; GO_process: GO:0015992 - proton transport [Evidence IEA]; GO_process: GO:0015992 - proton transport [Evidence IDA] [PMID 8396147]; GO_process: GO:0006885 - regulation of pH [Evidence IEP] [PMID 8929277]; GO_process: GO:0055085 - transmembrane transport [Evidence IDA] [PMID 8396147]; GO_process: GO:0006810 - transport [Evidence IEA]; H(+)-exporting P2-type ATPase PMA1 1885559 PMA1 30034532 PMA1 Sugiyamaella lignohabitans H(+)-exporting P2-type ATPase PMA1 XP_018737460.1 1882605 R 796027 CDS AWJ20_2603 30034533 complement(1895554..1896153) B 1 NC_031674.1 Cytoplasmic protein involved in the regulation of enolase (ENO1); mRNA expression is induced by calcium shortage, copper deficiency (via Mac1p) and the presence of galactose (via Gal4p); mRNA expression is also regulated by the cell cycle; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; Ree1p 1896153 REE1 30034533 REE1 Sugiyamaella lignohabitans Ree1p XP_018737461.1 1895554 R 796027 CDS AWJ20_2604 30034534 1897136..1898434 B 1 NC_031674.1 Component of the Paf1 complex; which associates with RNA polymerase II and is involved in histone methylation; plays a role in regulating Ty1 transposition; involved in transcription elongation as demonstrated by the G-less-based run-on (GLRO) assay; GO_component: GO:0016593 - Cdc73/Paf1 complex [Evidence IPI] [PMID 11884586]; GO_component: GO:0016593 - Cdc73/Paf1 complex [Evidence IPI] [PMID 11927560]; GO_component: GO:0005654 - nucleoplasm [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 15643076]; GO_function: GO:0003723 - RNA binding [Evidence IDA] [PMID 20732871]; GO_function: GO:1990269 - RNA polymerase II C-terminal domain phosphoserine binding [Evidence IDA] [PMID 22796944]; GO_function: GO:0001076 - RNA polymerase II transcription factor binding transcription factor activity [Evidence IPI] [PMID 11927560]; GO_process: GO:0006353 - DNA-templated transcription, termination [Evidence IMP] [PMID 23109428]; GO_process: GO:0006325 - chromatin organization [Evidence IMP] [PMID 20732871]; GO_process: GO:0080182 - histone H3-K4 trimethylation [Evidence IMP] [PMID 20732871]; GO_process: GO:2001209 - positive regulation of transcription elongation from RNA polymerase I promoter [Evidence IDA] [PMID 20299458]; GO_process: GO:0032968 - positive regulation of transcription elongation from RNA polymerase II promoter [Evidence IMP] [PMID 14710186]; GO_process: GO:2001173 - regulation of histone H2B conserved C-terminal lysine ubiquitination [Evidence IDA] [PMID 19531475]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0090262 - regulation of transcription-coupled nucleotide-excision repair [Evidence IGI] [PMID 21737840]; GO_process: GO:0006368 - transcription elongation from RNA polymerase II promoter [Evidence IGI] [PMID 11927560]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Leo1p 1898434 LEO1 30034534 LEO1 Sugiyamaella lignohabitans Leo1p XP_018737462.1 1897136 D 796027 CDS AWJ20_2605 30034535 complement(1898670..1899212) B 1 NC_031674.1 Essential protein required for maturation of 18S rRNA; null mutant is sensitive to hydroxyurea and is delayed in recovering from alpha-factor arrest; green fluorescent protein (GFP)-fusion protein localizes to the nucleolus; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0000462 - maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 12837249]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0000321 - re-entry into mitotic cell cycle after pheromone arrest [Evidence IMP] [PMID 16510898]; Efg1p 1899212 EFG1 30034535 EFG1 Sugiyamaella lignohabitans Efg1p XP_018737463.1 1898670 R 796027 CDS AWJ20_2606 30034536 complement(1906201..1907214) B 1 NC_031674.1 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH), isozyme 3; involved in glycolysis and gluconeogenesis; tetramer that catalyzes the reaction of glyceraldehyde-3-phosphate to 1,3 bis-phosphoglycerate; detected in the cytoplasm and cell wall; GAPDH-derived antimicrobial peptides secreted by S. cerevisiae are active against a wide variety of wine-related yeasts and bateria; TDH3 has a paralog, TDH2, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11158358]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0009277 - fungal-type cell wall [Evidence IDA] [PMID 11158358]; GO_component: GO:0005811 - lipid particle [Evidence IDA] [PMID 10515935]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IDA,IPI] [PMID 16962558]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 16622836]; GO_function: GO:0051287 - NAD binding [Evidence IEA]; GO_function: GO:0050661 - NADP binding [Evidence IEA]; GO_function: GO:0004365 - glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity [Evidence IEA]; GO_function: GO:0004365 - glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity [Evidence IDA] [PMID 3905788]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0016620 - oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor [Evidence IEA]; GO_process: GO:0006915 - apoptotic process [Evidence IMP] [PMID 17726063]; GO_process: GO:0006094 - gluconeogenesis [Evidence IEP] [PMID 3905788]; GO_process: GO:0006006 - glucose metabolic process [Evidence IEA]; GO_process: GO:0006096 - glycolytic process [Evidence IEA,IEA]; GO_process: GO:0006096 - glycolytic process [Evidence IEP] [PMID 3905788]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0072593 - reactive oxygen species metabolic process [Evidence IMP] [PMID 17726063]; glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) TDH3 1907214 TDH3 30034536 TDH3 Sugiyamaella lignohabitans glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) TDH3 XP_018737464.1 1906201 R 796027 CDS AWJ20_2607 30034537 join(1914851..1915534,1917257..1917305,1917600..1917625) B 1 NC_031674.1 Isoamyl acetate-hydrolyzing esterase; required in balance with alcohol acetyltransferase to maintain optimal amounts of isoamyl acetate, which is particularly important in sake brewing; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA,IEA]; GO_function: GO:0016788 - hydrolase activity, acting on ester bonds [Evidence IEA]; GO_function: GO:0016788 - hydrolase activity, acting on ester bonds [Evidence IDA] [PMID 10855721]; GO_process: GO:0006083 - acetate metabolic process [Evidence IDA] [PMID 10855721]; GO_process: GO:0016042 - lipid catabolic process [Evidence IEA]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA,IEA]; Iah1p 1917625 IAH1 30034537 IAH1 Sugiyamaella lignohabitans Iah1p XP_018737465.1 1914851 D 796027 CDS AWJ20_2608 30034538 complement(1915867..1916343) B 1 NC_031674.1 uncharacterized protein 1916343 30034538 AWJ20_2608 Sugiyamaella lignohabitans uncharacterized protein XP_018737466.1 1915867 R 796027 CDS AWJ20_2609 30034539 1917652..1919679 B 1 NC_031674.1 Putative glycosidase; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm; YIR007W is a non-essential gene; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016798 - hydrolase activity, acting on glycosyl bonds [Evidence IEA]; GO_function: GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0005975 - carbohydrate metabolic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; hydrolase 1919679 30034539 AWJ20_2609 Sugiyamaella lignohabitans hydrolase XP_018737467.1 1917652 D 796027 CDS AWJ20_2610 30034541 complement(1920579..1922225) B 1 NC_031674.1 TFIID subunit (67 kDa); involved in RNA polymerase II transcription initiation; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11914276]; GO_component: GO:0005669 - transcription factor TFIID complex [Evidence IEA]; GO_component: GO:0005669 - transcription factor TFIID complex [Evidence IDA] [PMID 10788514]; GO_component: GO:0005669 - transcription factor TFIID complex [Evidence IDA] [PMID 15448131]; GO_function: GO:0001075 - RNA polymerase II core promoter sequence-specific DNA binding transcription factor activity involved in preinitiation complex assembly [Evidence IC]; GO_process: GO:0051123 - RNA polymerase II transcriptional preinitiation complex assembly [Evidence IMP] [PMID 12840001]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IDA] [PMID 12138208]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IDA] [PMID 15448131]; GO_process: GO:0006367 - transcription initiation from RNA polymerase II promoter [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Taf7p 1922225 TAF7 30034541 TAF7 Sugiyamaella lignohabitans Taf7p XP_018737468.1 1920579 R 796027 CDS AWJ20_2611 30034542 1922881..1923771 B 1 NC_031674.1 Mitochondrial RNA polymerase specificity factor; has structural similarity to S-adenosylmethionine-dependent methyltransferases and functional similarity to bacterial sigma-factors; Mtf1p interacts with and stabilizes the Rpo41p-promoter complex, enhancing DNA bending and melting to facilitate pre-initiation open complex formation; GO_component: GO:0034245 - mitochondrial DNA-directed RNA polymerase complex [Evidence IDA] [PMID 7929382]; GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IDA] [PMID 12270918]; GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IDA] [PMID 22984289]; GO_component: GO:0005759 - mitochondrial matrix [Evidence IDA] [PMID 12270918]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0008168 - methyltransferase activity [Evidence IEA]; GO_function: GO:0034246 - mitochondrial RNA polymerase binding promoter specificity activity [Evidence IDA] [PMID 20008320]; GO_function: GO:0034246 - mitochondrial RNA polymerase binding promoter specificity activity [Evidence IDA,IPI] [PMID 7929382]; GO_function: GO:0000179 - rRNA (adenine-N6,N6-)-dimethyltransferase activity [Evidence IEA]; GO_function: GO:0008649 - rRNA methyltransferase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0032259 - methylation [Evidence IEA]; GO_process: GO:0031167 - rRNA methylation [Evidence IEA]; GO_process: GO:0000154 - rRNA modification [Evidence IEA]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006391 - transcription initiation from mitochondrial promoter [Evidence IDA] [PMID 19920143]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Mtf1p 1923771 MTF1 30034542 MTF1 Sugiyamaella lignohabitans Mtf1p XP_018737469.1 1922881 D 796027 CDS AWJ20_2612 30034543 1924897..1927785 B 1 NC_031674.1 DNA binding transcriptional activator; mediates serine/threonine activation of the catabolic L-serine (L-threonine) deaminase (CHA1); Zinc-finger protein with Zn[2]-Cys[6] fungal-type binuclear cluster domain; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IPI] [PMID 8889513]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19111667]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19158363]; GO_function: GO:0000981 - sequence-specific DNA binding RNA polymerase II transcription factor activity [Evidence IEA]; GO_function: GO:0003700 - sequence-specific DNA binding transcription factor activity [Evidence IDA,IPI,ISS] [PMID 8889513]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0009063 - cellular amino acid catabolic process [Evidence IGI,IMP] [PMID 8889513]; GO_process: GO:0045893 - positive regulation of transcription, DNA-templated [Evidence IMP] [PMID 8889513]; GO_process: GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence IEA]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA,IEA]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA,IEA]; Cha4p 1927785 CHA4 30034543 CHA4 Sugiyamaella lignohabitans Cha4p XP_018737470.1 1924897 D 796027 CDS AWJ20_2613 30034544 join(1928175..1928402,1928514..1930184) B 1 NC_031674.1 Sar family guanine nucleotide exchange factor SEC12 1930184 SEC12 30034544 SEC12 Sugiyamaella lignohabitans Sar family guanine nucleotide exchange factor SEC12 XP_018737471.1 1928175 D 796027 CDS AWJ20_2614 30034545 1937161..1939482 B 1 NC_031674.1 RNA-binding protein that may be involved in translational regulation; binds specific categories of mRNAs, including those that contain upstream open reading frames (uORFs) and internal ribosome entry sites (IRES); interacts genetically with chromatin remodelers and splicing factors, linking chromatin state, splicing and as a result mRNA maturation; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 23028530]; GO_component: GO:0000932 - cytoplasmic mRNA processing body [Evidence IDA] [PMID 23222640]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 23028530]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006338 - chromatin remodeling [Evidence IGI] [PMID 23028530]; GO_process: GO:0000398 - mRNA splicing, via spliceosome [Evidence IGI] [PMID 23028530]; GO_process: GO:0006417 - regulation of translation [Evidence IEA]; Mrn1p 1939482 MRN1 30034545 MRN1 Sugiyamaella lignohabitans Mrn1p XP_018737472.1 1937161 D 796027 CDS AWJ20_2615 30034546 complement(1941550..1942323) B 1 NC_031674.1 uncharacterized protein 1942323 30034546 AWJ20_2615 Sugiyamaella lignohabitans uncharacterized protein XP_018737473.1 1941550 R 796027 CDS AWJ20_2616 30034547 1943342..1945117 B 1 NC_031674.1 uncharacterized protein 1945117 30034547 AWJ20_2616 Sugiyamaella lignohabitans uncharacterized protein XP_018737474.1 1943342 D 796027 CDS AWJ20_2617 30034548 complement(1946979..1948760) B 1 NC_031674.1 uncharacterized protein 1948760 30034548 AWJ20_2617 Sugiyamaella lignohabitans uncharacterized protein XP_018737475.1 1946979 R 796027 CDS AWJ20_2618 30034549 1949984..1952191 B 1 NC_031674.1 Subunit of the RNA polymerase II mediator complex; associates with core polymerase subunits to form the RNA polymerase II holoenzyme; contributes to both postive and negative transcriptional regulation; dispensible for basal transcription; GO_component: GO:0070847 - core mediator complex [Evidence IDA] [PMID 9891034]; GO_component: GO:0016592 - mediator complex [Evidence IDA] [PMID 9891034]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0001102 - RNA polymerase II activating transcription factor binding [Evidence IDA] [PMID 20308326]; GO_process: GO:0051123 - RNA polymerase II transcriptional preinitiation complex assembly [Evidence IMP] [PMID 12482986]; GO_process: GO:0000122 - negative regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 16452140]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 12558798]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Sin4p 1952191 SIN4 30034549 SIN4 Sugiyamaella lignohabitans Sin4p XP_018737476.1 1949984 D 796027 CDS AWJ20_2619 30034550 complement(1952232..1953812) B 1 NC_031674.1 uncharacterized protein 1953812 30034550 AWJ20_2619 Sugiyamaella lignohabitans uncharacterized protein XP_018737477.1 1952232 R 796027 CDS AWJ20_2620 30034552 complement(1954033..1954860) B 1 NC_031674.1 Exosome non-catalytic core component; involved in 3'-5' RNA processing and degradation in both the nucleus and the cytoplasm; predicted to contain an S1 RNA binding domain; has similarity to human hCsl4p (EXOSC1); GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11027292]; GO_component: GO:0000177 - cytoplasmic exosome (RNase complex) [Evidence IDA] [PMID 10465791]; GO_component: GO:0000177 - cytoplasmic exosome (RNase complex) [Evidence IDA] [PMID 19046973]; GO_component: GO:0000178 - exosome (RNase complex) [Evidence IEA,IEA]; GO_component: GO:0000176 - nuclear exosome (RNase complex) [Evidence IDA] [PMID 10465791]; GO_component: GO:0000176 - nuclear exosome (RNase complex) [Evidence IDA] [PMID 19046973]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11027292]; GO_function: GO:0003723 - RNA binding [Evidence IEA,IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0000467 - exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 10465791]; GO_process: GO:0000467 - exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 10508172]; GO_process: GO:0043628 - ncRNA 3'-end processing [Evidence IC] [PMID 10465791]; GO_process: GO:0070651 - nonfunctional rRNA decay [Evidence IC] [PMID 10465791]; GO_process: GO:0071042 - nuclear polyadenylation-dependent mRNA catabolic process [Evidence IC] [PMID 10465791]; GO_process: GO:0071035 - nuclear polyadenylation-dependent rRNA catabolic process [Evidence IMP] [PMID 10465791]; GO_process: GO:0071038 - nuclear polyadenylation-dependent tRNA catabolic process [Evidence IDA] [PMID 15828860]; GO_process: GO:0071038 - nuclear polyadenylation-dependent tRNA catabolic process [Evidence IDA] [PMID 15935758]; GO_process: GO:0071038 - nuclear polyadenylation-dependent tRNA catabolic process [Evidence IDA] [PMID 17643380]; GO_process: GO:0070478 - nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay [Evidence IC] [PMID 10465791]; GO_process: GO:0034427 - nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5' [Evidence IGI,IMP] [PMID 11027292]; GO_process: GO:0034427 - nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5' [Evidence IGI,IMP] [PMID 19060898]; GO_process: GO:0070481 - nuclear-transcribed mRNA catabolic process, non-stop decay [Evidence IMP] [PMID 11910110]; GO_process: GO:0071051 - polyadenylation-dependent snoRNA 3'-end processing [Evidence IC] [PMID 10465791]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; Csl4p 1954860 CSL4 30034552 CSL4 Sugiyamaella lignohabitans Csl4p XP_018737478.1 1954033 R 796027 CDS AWJ20_2621 30034553 complement(1955156..1956742) B 1 NC_031674.1 Polyamine transporter of the major facilitator superfamily; member of the 12-spanner drug:H(+) antiporter DHA1 family; recognizes spermine, putrescine, and spermidine; catalyzes uptake of polyamines at alkaline pH and excretion at acidic pH; during oxidative stress exports spermine, spermidine from the cell, which controls timing of expression of stress-responsive genes; phosphorylation enhances activity and sorting to the plasma membrane; GO_component: GO:0033101 - cellular bud membrane [Evidence IDA] [PMID 13679573]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IMP] [PMID 11171066]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 12562762]; GO_component: GO:0005886 - plasma membrane [Evidence IDA,IMP] [PMID 15637075]; GO_function: GO:0015297 - antiporter activity [Evidence IEA]; GO_function: GO:0015606 - spermidine transmembrane transporter activity [Evidence IMP] [PMID 11171066]; GO_function: GO:0015606 - spermidine transmembrane transporter activity [Evidence IDA,IMP] [PMID 15637075]; GO_function: GO:0000297 - spermine transmembrane transporter activity [Evidence IMP] [PMID 11171066]; GO_function: GO:0000297 - spermine transmembrane transporter activity [Evidence IDA,IMP] [PMID 15637075]; GO_function: GO:0000297 - spermine transmembrane transporter activity [Evidence IMP] [PMID 9920864]; GO_process: GO:1902047 - polyamine transmembrane transport [Evidence IMP] [PMID 24136413]; GO_process: GO:0015847 - putrescine transport [Evidence IMP] [PMID 9920864]; GO_process: GO:0015848 - spermidine transport [Evidence IMP] [PMID 11171066]; GO_process: GO:0015848 - spermidine transport [Evidence IDA,IMP] [PMID 15637075]; GO_process: GO:0015848 - spermidine transport [Evidence IMP] [PMID 9920864]; GO_process: GO:0000296 - spermine transport [Evidence IMP] [PMID 11171066]; GO_process: GO:0000296 - spermine transport [Evidence IDA,IMP] [PMID 15637075]; GO_process: GO:0000296 - spermine transport [Evidence IMP] [PMID 9920864]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Tpo1p 1956742 TPO1 30034553 TPO1 Sugiyamaella lignohabitans Tpo1p XP_018737479.1 1955156 R 796027 CDS AWJ20_2622 30034554 complement(1958919..1961714) B 1 NC_031674.1 Targeting subunit for Glc7p protein phosphatase; localized to the bud neck, required for localization of chitin synthase III to the bud neck via interaction with the chitin synthase III regulatory subunit Skt5p; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 15282802]; GO_component: GO:0032174 - cellular bud neck septin collar [Evidence IDA] [PMID 15901837]; GO_component: GO:0000131 - incipient cellular bud site [Evidence IDA] [PMID 15470103]; GO_component: GO:0000131 - incipient cellular bud site [Evidence IDA] [PMID 15901837]; GO_component: GO:0005940 - septin ring [Evidence IDA] [PMID 15901837]; GO_component: GO:0005940 - septin ring [Evidence IDA,IPI] [PMID 9314530]; GO_function: GO:0005515 - protein binding [Evidence IPI] [PMID 12529424]; GO_function: GO:0005515 - protein binding [Evidence IPI] [PMID 9314530]; GO_process: GO:0008105 - asymmetric protein localization [Evidence IDA,IMP] [PMID 12529424]; GO_process: GO:0000917 - barrier septum assembly [Evidence IGI] [PMID 15470103]; GO_process: GO:0006031 - chitin biosynthetic process [Evidence IGI,IMP] [PMID 15470103]; Bni4p 1961714 BNI4 30034554 BNI4 Sugiyamaella lignohabitans Bni4p XP_018737480.1 1958919 R 796027 CDS AWJ20_2623 30034555 1970231..1971010 B 1 NC_031674.1 uncharacterized protein 1971010 30034555 AWJ20_2623 Sugiyamaella lignohabitans uncharacterized protein XP_018737481.1 1970231 D 796027 CDS AWJ20_2624 30034556 1971430..1973766 B 1 NC_031674.1 Mitochondrial 15S rRNA-binding protein; required for intron removal of COB and COX1 pre-mRNAs; has separable roles in stabilizing mitochondrial 15S rRNA and in maturation of the COB and COX1 mRNAs; contains pentatricopeptide repeat (PPR) motifs; mutant is respiratory deficient and has defective plasma membrane electron transport; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 20124025]; GO_function: GO:0019843 - rRNA binding [Evidence IDA] [PMID 20124025]; GO_process: GO:0008380 - RNA splicing [Evidence IEA]; GO_process: GO:0008380 - RNA splicing [Evidence IMP] [PMID 19562342]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0000963 - mitochondrial RNA processing [Evidence IMP] [PMID 19562342]; GO_process: GO:0000002 - mitochondrial genome maintenance [Evidence IMP] [PMID 19751518]; GO_process: GO:0016072 - rRNA metabolic process [Evidence IMP] [PMID 20124025]; Ccm1p 1973766 CCM1 30034556 CCM1 Sugiyamaella lignohabitans Ccm1p XP_018737482.1 1971430 D 796027 CDS AWJ20_2625 30034557 complement(1974632..1976728) B 1 NC_031674.1 uncharacterized protein 1976728 30034557 AWJ20_2625 Sugiyamaella lignohabitans uncharacterized protein XP_018737483.1 1974632 R 796027 CDS AWJ20_2626 30034558 complement(1985640..1985879) B 1 NC_031674.1 Chaperone that facilitates the assembly of cytochrome c oxidase; integral to the mitochondrial inner membrane; interacts with a subcomplex of subunits VII, VIIa, and VIII (Cox7p, Cox9p, and Cox8p) but not with the holoenzyme; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0031305 - integral component of mitochondrial inner membrane [Evidence IDA] [PMID 15507444]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IDA] [PMID 11498004]; GO_component: GO:0031966 - mitochondrial membrane [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0051082 - unfolded protein binding [Evidence IDA] [PMID 11498004]; GO_process: GO:0009060 - aerobic respiration [Evidence IMP] [PMID 8702496]; GO_process: GO:0033617 - mitochondrial respiratory chain complex IV assembly [Evidence IMP] [PMID 11498004]; GO_process: GO:0033617 - mitochondrial respiratory chain complex IV assembly [Evidence IMP] [PMID 15507444]; Pet100p 1985879 PET100 30034558 PET100 Sugiyamaella lignohabitans Pet100p XP_018737484.1 1985640 R 796027 CDS AWJ20_2627 30034559 complement(1986410..1987942) B 1 NC_031674.1 Acetyl-coA synthetase isoform; along with Acs1p, acetyl-coA synthetase isoform is the nuclear source of acetyl-coA for histone acetylation; mutants affect global transcription; required for growth on glucose; expressed under anaerobic conditions; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 16857587]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 9711835]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 19618123]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 16857587]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 19618123]; GO_function: GO:0016208 - AMP binding [Evidence IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0003987 - acetate-CoA ligase activity [Evidence IEA,IEA]; GO_function: GO:0003987 - acetate-CoA ligase activity [Evidence IDA] [PMID 8910545]; GO_function: GO:0016880 - acid-ammonia (or amide) ligase activity [Evidence IDA] [PMID 18305111]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006085 - acetyl-CoA biosynthetic process [Evidence IDA] [PMID 8910545]; GO_process: GO:0019427 - acetyl-CoA biosynthetic process from acetate [Evidence IEA]; GO_process: GO:0016573 - histone acetylation [Evidence IMP] [PMID 16857587]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0006090 - pyruvate metabolic process [Evidence IEA]; GO_process: GO:0001302 - replicative cell aging [Evidence IMP] [PMID 19618123]; acetate--CoA ligase ACS2 1987942 ACS2 30034559 ACS2 Sugiyamaella lignohabitans acetate--CoA ligase ACS2 XP_018737485.1 1986410 R 796027 CDS AWJ20_2628 30034560 complement(1989988..1993503) B 1 NC_031674.1 Putative transcription factor; has homolog in Kluyveromyces lactis; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0000981 - sequence-specific DNA binding RNA polymerase II transcription factor activity [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence IEA]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA,IEA]; GO_process: GO:0030435 - sporulation resulting in formation of a cellular spore [Evidence IEA]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA,IEA]; Sef1p 1993503 SEF1 30034560 SEF1 Sugiyamaella lignohabitans Sef1p XP_018737486.1 1989988 R 796027 CDS AWJ20_2629 30034561 2000405..2001448 B 1 NC_031674.1 Essential non-ATPase regulatory subunit of the 26S proteasome; has similarity to the human p40 proteasomal subunit and to another S. cerevisiae regulatory subunit, Rpn11p; GO_component: GO:0000502 - proteasome complex [Evidence IEA]; GO_component: GO:0008541 - proteasome regulatory particle, lid subcomplex [Evidence IDA] [PMID 11742986]; GO_component: GO:0008541 - proteasome regulatory particle, lid subcomplex [Evidence IDA] [PMID 9741626]; GO_component: GO:0034515 - proteasome storage granule [Evidence IDA] [PMID 18504300]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006511 - ubiquitin-dependent protein catabolic process [Evidence TAS] [PMID 8982460]; GO_process: GO:0006511 - ubiquitin-dependent protein catabolic process [Evidence TAS] [PMID 9697412]; proteasome regulatory particle lid subunit RPN8 2001448 RPN8 30034561 RPN8 Sugiyamaella lignohabitans proteasome regulatory particle lid subunit RPN8 XP_018737487.1 2000405 D 796027 CDS AWJ20_2631 30034564 2002193..2002993 B 1 NC_031674.1 rRNA-binding protein required for 40S ribosomal subunit biogenesis; contains an RNA recognition motif (RRM); hydrophilin essential to overcome the stress of the desiccation-rehydration process; NOP6 may be a fungal-specific gene as no homologs have been yet identified in higher eukaryotes; GO_component: GO:0030686 - 90S preribosome [Evidence IDA] [PMID 21282979]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 17425675]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0019843 - rRNA binding [Evidence IDA] [PMID 21282979]; GO_function: GO:0030515 - snoRNA binding [Evidence IDA] [PMID 21893585]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0042274 - ribosomal small subunit biogenesis [Evidence IGI] [PMID 17425675]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; Nop6p 2002993 NOP6 30034564 NOP6 Sugiyamaella lignohabitans Nop6p XP_018737488.1 2002193 D 796027 CDS AWJ20_2632 30034565 complement(2003247..2003825) B 1 NC_031674.1 Small rho-like GTPase; essential for establishment and maintenance of cell polarity; plays a role late in cell fusion via activation of key cell fusion regulator Fus2p; mutants have defects in the organization of actin and septins; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 12455994]; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 12455994]; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 8167411]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 12455994]; GO_component: GO:0000131 - incipient cellular bud site [Evidence IDA] [PMID 12455994]; GO_component: GO:0000131 - incipient cellular bud site [Evidence IDA] [PMID 8167411]; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 8167411]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0031965 - nuclear membrane [Evidence IDA] [PMID 12455994]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 12455994]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 8167411]; GO_component: GO:0005940 - septin ring [Evidence IDA] [PMID 23906065]; GO_function: GO:0005525 - GTP binding [Evidence IEA,IEA]; GO_function: GO:0003924 - GTPase activity [Evidence IDA] [PMID 11591390]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0007118 - budding cell apical bud growth [Evidence IMP] [PMID 10066831]; GO_process: GO:0007119 - budding cell isotropic bud growth [Evidence IMP] [PMID 10066831]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0000747 - conjugation with cellular fusion [Evidence IMP] [PMID 22323294]; GO_process: GO:0030010 - establishment of cell polarity [Evidence IMP] [PMID 23468594]; GO_process: GO:0001403 - invasive growth in response to glucose limitation [Evidence IMP] [PMID 10066831]; GO_process: GO:0000750 - pheromone-dependent signal transduction involved in conjugation with cellular fusion [Evidence IGI,IMP] [PMID 11003652]; GO_process: GO:0045921 - positive regulation of exocytosis [Evidence IMP] [PMID 11595741]; GO_process: GO:0045921 - positive regulation of exocytosis [Evidence IGI,IPI] [PMID 19955214]; GO_process: GO:0007124 - pseudohyphal growth [Evidence IMP] [PMID 10066831]; GO_process: GO:0007096 - regulation of exit from mitosis [Evidence IMP] [PMID 12234925]; GO_process: GO:0060178 - regulation of exocyst localization [Evidence IMP] [PMID 11595741]; GO_process: GO:0031384 - regulation of initiation of mating projection growth [Evidence IMP] [PMID 14734532]; GO_process: GO:0032889 - regulation of vacuole fusion, non-autophagic [Evidence IMP] [PMID 11598008]; GO_process: GO:0019236 - response to pheromone [Evidence IEA]; GO_process: GO:0031106 - septin ring organization [Evidence IMP] [PMID 14517318]; GO_process: GO:0007264 - small GTPase mediated signal transduction [Evidence IEA]; Rho family GTPase CDC42 2003825 CDC42 30034565 CDC42 Sugiyamaella lignohabitans Rho family GTPase CDC42 XP_018737489.1 2003247 R 796027 CDS AWJ20_2633 30034566 2005414..2006484 B 1 NC_031674.1 Putative GTPase with a role in biogenesis of RNA pol II and polIII; may be involved in assembly of RNA polymerases II and III and in their transport into the nucleus; contains a Gly-Pro-Asn motif in the G domain; similar to Npa3p and Gpn3p; highly conserved across species and homologous to human gene GPN2/ATPBD1B; required for establishment of sister chromatid cohesion; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14690591]; GO_function: GO:0005525 - GTP binding [Evidence IEA]; GO_function: GO:0005525 - GTP binding [Evidence ISA] [PMID 23267056]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_process: GO:0044376 - RNA polymerase II complex localization to nucleus [Evidence IMP] [PMID 23267056]; GO_process: GO:1990022 - RNA polymerase III complex localization to nucleus [Evidence IMP] [PMID 23267056]; GO_process: GO:0034087 - establishment of mitotic sister chromatid cohesion [Evidence IMP] [PMID 18439903]; Gpn2p 2006484 GPN2 30034566 GPN2 Sugiyamaella lignohabitans Gpn2p XP_018737490.1 2005414 D 796027 CDS AWJ20_2634 30034567 2007651..2010308 B 1 NC_031674.1 uncharacterized protein 2010308 30034567 AWJ20_2634 Sugiyamaella lignohabitans uncharacterized protein XP_018737491.1 2007651 D 796027 CDS AWJ20_2635 30034568 complement(2012482..2013000) B 1 NC_031674.1 Thiol-specific peroxiredoxin; reduces hydroperoxides to protect against oxidative damage; function in vivo requires covalent conjugation to Urm1p; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 10681558]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 16622836]; GO_function: GO:0016209 - antioxidant activity [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0004601 - peroxidase activity [Evidence IEA]; GO_function: GO:0051920 - peroxiredoxin activity [Evidence IEA]; GO_function: GO:0008379 - thioredoxin peroxidase activity [Evidence IDA,IMP,ISS] [PMID 10681558]; GO_process: GO:0045454 - cell redox homeostasis [Evidence IDA,IMP] [PMID 10681558]; GO_process: GO:0034599 - cellular response to oxidative stress [Evidence IGI] [PMID 15051715]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; GO_process: GO:0010038 - response to metal ion [Evidence IMP] [PMID 12270680]; Ahp1p 2013000 AHP1 30034568 AHP1 Sugiyamaella lignohabitans Ahp1p XP_018737492.1 2012482 R 796027 CDS AWJ20_2636 30034569 2012675..2012896 B 1 NC_031674.1 uncharacterized protein 2012896 30034569 AWJ20_2636 Sugiyamaella lignohabitans uncharacterized protein XP_018737493.1 2012675 D 796027 CDS AWJ20_2637 30034570 2014800..2015207 B 1 NC_031674.1 uncharacterized protein 2015207 30034570 AWJ20_2637 Sugiyamaella lignohabitans uncharacterized protein XP_018737494.1 2014800 D 796027 CDS AWJ20_2638 30034571 2016012..2021243 B 1 NC_031674.1 AP-1 accessory protein; colocalizes with clathrin to the late-Golgi apparatus; involved in TGN-endosome transport; physically interacts with AP-1; similar to the mammalian p200; may interact with ribosomes; YJL207C is a non-essential gene; GO_component: GO:0030121 - AP-1 adaptor complex [Evidence IPI] [PMID 16687571]; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA,IEA]; GO_component: GO:0030136 - clathrin-coated vesicle [Evidence IDA] [PMID 14562095]; GO_component: GO:0005840 - ribosome [Evidence IDA] [PMID 16702403]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008104 - protein localization [Evidence IMP] [PMID 16687571]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0042147 - retrograde transport, endosome to Golgi [Evidence IGI,IMP] [PMID 16687571]; GO_process: GO:0006810 - transport [Evidence IEA]; Laa1p 2021243 LAA1 30034571 LAA1 Sugiyamaella lignohabitans Laa1p XP_018737495.1 2016012 D 796027 CDS AWJ20_2639 30034572 2021871..2022812 B 1 NC_031674.1 Major mitochondrial nuclease; has RNAse and DNA endo- and exonucleolytic activities; roles in mitochondrial recombination, apoptosis and maintenance of polyploidy; involved in fragmentation of genomic DNA during PND (programmed nuclear destruction); encodes ortholog of mammalian endoG; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IDA] [PMID 17244531]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IDA] [PMID 3286639]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 17244531]; GO_function: GO:0004520 - endodeoxyribonuclease activity [Evidence IDA] [PMID 3286639]; GO_function: GO:0004519 - endonuclease activity [Evidence IEA]; GO_function: GO:0004529 - exodeoxyribonuclease activity [Evidence IDA] [PMID 3286639]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA,IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA,IEA]; GO_function: GO:0004518 - nuclease activity [Evidence IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0004540 - ribonuclease activity [Evidence IDA] [PMID 3286639]; GO_process: GO:0006308 - DNA catabolic process [Evidence IDA] [PMID 3286639]; GO_process: GO:0006310 - DNA recombination [Evidence IMP] [PMID 8087883]; GO_process: GO:0006401 - RNA catabolic process [Evidence IDA] [PMID 3286639]; GO_process: GO:0006309 - apoptotic DNA fragmentation [Evidence IMP] [PMID 22727375]; GO_process: GO:0006915 - apoptotic process [Evidence IMP] [PMID 17244531]; Nuc1p 2022812 NUC1 30034572 NUC1 Sugiyamaella lignohabitans Nuc1p XP_018737496.1 2021871 D 796027 CDS AWJ20_2640 30034574 complement(join(2030584..2031256,2031704..2032313,2032505..2032523)) B 1 NC_031674.1 uncharacterized protein 2032523 30034574 AWJ20_2640 Sugiyamaella lignohabitans uncharacterized protein XP_018737497.1 2030584 R 796027 CDS AWJ20_2641 30034575 complement(join(2032699..2033240,2033643..2034029,2034432..2034776,2034968..2034986)) B 1 NC_031674.1 uncharacterized protein 2034986 30034575 AWJ20_2641 Sugiyamaella lignohabitans uncharacterized protein XP_018737498.1 2032699 R 796027 CDS AWJ20_2642 30034576 complement(join(2036119..2036666,2037671..2037875)) B 1 NC_031674.1 uncharacterized protein 2037875 30034576 AWJ20_2642 Sugiyamaella lignohabitans uncharacterized protein XP_018737499.1 2036119 R 796027 CDS AWJ20_2643 30034577 2037592..2042493 B 1 NC_031674.1 cell surface glycoprotein (predicted) 2042493 30034577 AWJ20_2643 Sugiyamaella lignohabitans cell surface glycoprotein (predicted) XP_018737500.1 2037592 D 796027 CDS AWJ20_2644 30034578 complement(2038026..2040554) B 1 NC_031674.1 uncharacterized protein 2040554 30034578 AWJ20_2644 Sugiyamaella lignohabitans uncharacterized protein XP_018737501.1 2038026 R 796027 CDS AWJ20_2645 30034579 complement(2042568..2043650) B 1 NC_031674.1 Flavin-containing monooxygenase; localized to the cytoplasmic face of the ER membrane; catalyzes oxidation of biological thiols to maintain the ER redox buffer ratio for correct folding of disulfide-bonded proteins; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IDA] [PMID 10077572]; GO_function: GO:0004499 - N,N-dimethylaniline monooxygenase activity [Evidence IEA]; GO_function: GO:0004499 - N,N-dimethylaniline monooxygenase activity [Evidence IDA] [PMID 10600176]; GO_function: GO:0050661 - NADP binding [Evidence IEA]; GO_function: GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO_function: GO:0004497 - monooxygenase activity [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0006457 - protein folding [Evidence IDA] [PMID 10077572]; Fmo1p 2043650 FMO1 30034579 FMO1 Sugiyamaella lignohabitans Fmo1p XP_018737502.1 2042568 R 796027 CDS AWJ20_2646 30034580 complement(2045443..2046510) B 1 NC_031674.1 putative agrin-like 2046510 30034580 AWJ20_2646 Sugiyamaella lignohabitans putative agrin-like XP_018737503.1 2045443 R 796027 CDS AWJ20_2647 30034581 complement(2049885..2050544) B 1 NC_031674.1 uncharacterized protein 2050544 30034581 AWJ20_2647 Sugiyamaella lignohabitans uncharacterized protein XP_018737504.1 2049885 R 796027 CDS AWJ20_2648 30034582 complement(2050907..2051509) B 1 NC_031674.1 uncharacterized protein 2051509 30034582 AWJ20_2648 Sugiyamaella lignohabitans uncharacterized protein XP_018737505.1 2050907 R 796027 CDS AWJ20_2649 30034583 complement(2052887..2056456) B 1 NC_031674.1 DNA helicase/Ubiquitin ligase; involved in error-free branch of DNA damage tolerance (DDT) pathway; proposed to promote replication fork regression during postreplication repair by template switching; stimulates synthesis of free and PCNA-bound polyubiquitin chains by Ubc13p-Mms2p; required for error-prone translesion synthesis; forms nuclear foci upon DNA replication stress; associates with native telomeres, cooperates with homologous recombination in senescent cells; GO_component: GO:0000781 - chromosome, telomeric region [Evidence IDA] [PMID 24393774]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0000790 - nuclear chromatin [Evidence IDA] [PMID 10880451]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0008094 - DNA-dependent ATPase activity [Evidence IDA] [PMID 17936713]; GO_function: GO:0000403 - Y-form DNA binding [Evidence IDA] [PMID 17936713]; GO_function: GO:0000400 - four-way junction DNA binding [Evidence IDA] [PMID 17936713]; GO_function: GO:0009378 - four-way junction helicase activity [Evidence IDA] [PMID 17936713]; GO_function: GO:0004386 - helicase activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016818 - hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA,IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0006281 - DNA repair [Evidence IEA]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0006302 - double-strand break repair [Evidence IGI,IMP] [PMID 16224103]; GO_process: GO:0042276 - error-prone translesion synthesis [Evidence IMP] [PMID 23142547]; GO_process: GO:0010994 - free ubiquitin chain polymerization [Evidence IDA] [PMID 19706603]; GO_process: GO:0006301 - postreplication repair [Evidence IDA] [PMID 17936713]; GO_process: GO:0000209 - protein polyubiquitination [Evidence IDA] [PMID 19706603]; DNA helicase RAD5 2056456 RAD5 30034583 RAD5 Sugiyamaella lignohabitans DNA helicase RAD5 XP_018737506.1 2052887 R 796027 CDS AWJ20_2650 30034585 join(2062074..2068395,2068462..2078750) B 1 NC_031674.1 Mucin family member that functions as an osmosensor in the HOG pathway; functions in the Sho1p-mediated HOG pathway with Msb2p; proposed to be a negative regulator of filamentous growth; mutant displays defects in beta-1,3 glucan synthesis and bud site selection; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA,ISS] [PMID 8550469]; GO_component: GO:0030427 - site of polarized growth [Evidence IDA] [PMID 17627274]; GO_function: GO:0005034 - osmosensor activity [Evidence IGI] [PMID 17627274]; GO_process: GO:0006075 - (1->3)-beta-D-glucan biosynthetic process [Evidence IMP] [PMID 8550469]; GO_process: GO:0000282 - cellular bud site selection [Evidence IMP] [PMID 8550469]; GO_process: GO:0031505 - fungal-type cell wall organization [Evidence IMP] [PMID 8550469]; GO_process: GO:0006972 - hyperosmotic response [Evidence IGI] [PMID 17627274]; GO_process: GO:0007232 - osmosensory signaling pathway via Sho1 osmosensor [Evidence IGI,IPI] [PMID 17627274]; Hkr1p 2078750 HKR1 30034585 HKR1 Sugiyamaella lignohabitans Hkr1p XP_018737507.1 2062074 D 796027 CDS AWJ20_2651 30034586 complement(join(2064521..2065533,2065764..2065806)) B 1 NC_031674.1 uncharacterized protein 2065806 30034586 AWJ20_2651 Sugiyamaella lignohabitans uncharacterized protein XP_018737508.1 2064521 R 796027 CDS AWJ20_2652 30034587 complement(join(2066051..2067297,2067352..2067382)) B 1 NC_031674.1 Disintegrin and metalloproteinase domain-containing protein 30 2067382 30034587 AWJ20_2652 Sugiyamaella lignohabitans Disintegrin and metalloproteinase domain-containing protein 30 XP_018737509.1 2066051 R 796027 CDS AWJ20_2653 30034588 complement(2068859..2070313) B 1 NC_031674.1 Disintegrin and metalloproteinase domain-containing protein 30 2070313 30034588 AWJ20_2653 Sugiyamaella lignohabitans Disintegrin and metalloproteinase domain-containing protein 30 XP_018737510.1 2068859 R 796027 CDS AWJ20_2654 30034589 complement(join(2070806..2072079,2072444..2072462)) B 1 NC_031674.1 actin cortical patch component, with EF hand and WH2 motif Panl (predicted) 2072462 pan1 30034589 pan1 Sugiyamaella lignohabitans actin cortical patch component, with EF hand and WH2 motif Panl (predicted) XP_018737511.1 2070806 R 796027 CDS AWJ20_2655 30034590 complement(join(2074703..2078043,2078170..2078584,2078662..2078694)) B 1 NC_031674.1 actin cortical patch component, with EF hand and WH2 motif Panl (predicted) 2078694 pan1 30034590 pan1 Sugiyamaella lignohabitans actin cortical patch component, with EF hand and WH2 motif Panl (predicted) XP_018737512.1 2074703 R 796027 CDS AWJ20_2656 30034591 join(2079975..2080062,2080128..2081653) B 1 NC_031674.1 Glucosidase II beta subunit, forms a complex with alpha subunit Rot2p; involved in removal of two glucose residues from N-linked glycans during glycoprotein biogenesis in the ER; relocalizes from ER to cytoplasm upon DNA replication stress; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA,IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 14562095]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 22842922]; GO_component: GO:0005788 - endoplasmic reticulum lumen [Evidence IDA] [PMID 16373354]; GO_component: GO:0017177 - glucosidase II complex [Evidence IPI] [PMID 16373354]; GO_function: GO:0004558 - alpha-glucosidase activity [Evidence IMP] [PMID 16373354]; GO_function: GO:0004558 - alpha-glucosidase activity [Evidence IMP] [PMID 19542522]; GO_process: GO:0006491 - N-glycan processing [Evidence IEA]; GO_process: GO:0000271 - polysaccharide biosynthetic process [Evidence IMP] [PMID 16373354]; GO_process: GO:0006487 - protein N-linked glycosylation [Evidence IMP] [PMID 16373354]; Gtb1p 2081653 GTB1 30034591 GTB1 Sugiyamaella lignohabitans Gtb1p XP_018737513.1 2079975 D 796027 CDS AWJ20_2657 30034592 2082043..2083230 B 1 NC_031674.1 uncharacterized protein 2083230 30034592 AWJ20_2657 Sugiyamaella lignohabitans uncharacterized protein XP_018737514.1 2082043 D 796027 CDS AWJ20_2658 30034593 complement(2083310..2086603) B 1 NC_031674.1 RNA-dependent DExD/H-box ATPase; required for activation of spliceosome before first transesterification step in RNA splicing; implicated in rearranging and proofreading snRNA structure in catalytic activation of spliceosome; ortholog of human protein DHX16; GO_component: GO:0071006 - U2-type catalytic step 1 spliceosome [Evidence IDA,IMP] [PMID 2251118]; GO_component: GO:0071006 - U2-type catalytic step 1 spliceosome [Evidence IDA,IMP] [PMID 8112302]; GO_component: GO:0071006 - U2-type catalytic step 1 spliceosome [Evidence IDA,IMP] [PMID 8430102]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0008026 - ATP-dependent helicase activity [Evidence IEA]; GO_function: GO:0008186 - RNA-dependent ATPase activity [Evidence IDA] [PMID 1534753]; GO_function: GO:0004386 - helicase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0008380 - RNA splicing [Evidence IEA]; GO_process: GO:0000349 - generation of catalytic spliceosome for first transesterification step [Evidence IDA] [PMID 8943336]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0034247 - snoRNA splicing [Evidence IMP] [PMID 24442613]; DEAH-box RNA-dependent ATPase PRP2 2086603 PRP2 30034593 PRP2 Sugiyamaella lignohabitans DEAH-box RNA-dependent ATPase PRP2 XP_018737515.1 2083310 R 796027 CDS AWJ20_2659 30034594 2087228..2088352 B 1 NC_031674.1 Subunit of the CSN and 26S proteasome lid complexes; similar to mammalian p55 subunit and to another S. cerevisiae regulatory subunit, Rpn7p; Rpn5p is an essential protein; the COP9 signalosome is also known as the CSN; GO_component: GO:0008180 - COP9 signalosome [Evidence IDA] [PMID 21289098]; GO_component: GO:0000502 - proteasome complex [Evidence IEA]; GO_component: GO:0000502 - proteasome complex [Evidence IDA] [PMID 21289098]; GO_component: GO:0008541 - proteasome regulatory particle, lid subcomplex [Evidence IDA] [PMID 11742986]; GO_component: GO:0008541 - proteasome regulatory particle, lid subcomplex [Evidence IDA] [PMID 9741626]; GO_component: GO:0034515 - proteasome storage granule [Evidence IDA] [PMID 18504300]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0010388 - cullin deneddylation [Evidence IMP] [PMID 21289098]; GO_process: GO:0006511 - ubiquitin-dependent protein catabolic process [Evidence TAS] [PMID 8982460]; GO_process: GO:0006511 - ubiquitin-dependent protein catabolic process [Evidence TAS] [PMID 9697412]; proteasome regulatory particle lid subunit RPN5 2088352 RPN5 30034594 RPN5 Sugiyamaella lignohabitans proteasome regulatory particle lid subunit RPN5 XP_018737516.1 2087228 D 796027 CDS AWJ20_2660 30034596 complement(2089548..2090657) B 1 NC_031674.1 Conserved NADPH oxidoreductase containing flavin mononucleotide (FMN); homologous to Oye2p with different ligand binding and catalytic properties; has potential roles in oxidative stress response and programmed cell death; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0010181 - FMN binding [Evidence IEA]; GO_function: GO:0003959 - NADPH dehydrogenase activity [Evidence IEA]; GO_function: GO:0003959 - NADPH dehydrogenase activity [Evidence IDA,ISS] [PMID 7836424]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0018548 - pentaerythritol trinitrate reductase activity [Evidence IEA]; GO_function: GO:0052690 - trichloro-p-hydroquinone reductive dehalogenase activity [Evidence IEA]; GO_process: GO:0006915 - apoptotic process [Evidence IMP] [PMID 17897954]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; Oye3p 2090657 OYE3 30034596 OYE3 Sugiyamaella lignohabitans Oye3p XP_018737517.1 2089548 R 796027 CDS AWJ20_2661 30034597 2091310..2092068 B 1 NC_031674.1 uncharacterized protein 2092068 30034597 AWJ20_2661 Sugiyamaella lignohabitans uncharacterized protein XP_018737518.1 2091310 D 796027 CDS AWJ20_2662 30034598 2092517..2094700 B 1 NC_031674.1 Subunit of U3-containing 90S preribosome and SSU processome complexes; involved in production of 18S rRNA and assembly of small ribosomal subunit; member of t-Utp subcomplex involved with transcription of 35S rRNA transcript; Small Subunit processome is also known as SSU processome; GO_component: GO:0030686 - 90S preribosome [Evidence IDA] [PMID 12150911]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 12068309]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0032040 - small-subunit processome [Evidence IDA] [PMID 12068309]; GO_component: GO:0034455 - t-UTP complex [Evidence IDA] [PMID 17515605]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0000462 - maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 12068309]; GO_process: GO:0045943 - positive regulation of transcription from RNA polymerase I promoter [Evidence IMP] [PMID 15489292]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Utp4p 2094700 UTP4 30034598 UTP4 Sugiyamaella lignohabitans Utp4p XP_018737519.1 2092517 D 796027 CDS AWJ20_2663 30034599 complement(2095101..2096969) B 1 NC_031674.1 RNA polymerase III subunit C82; GO_component: GO:0005666 - DNA-directed RNA polymerase III complex [Evidence IDA] [PMID 10611227]; GO_component: GO:0005666 - DNA-directed RNA polymerase III complex [Evidence IDA] [PMID 3905793]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0003899 - DNA-directed RNA polymerase activity [Evidence IEA,IEA]; GO_function: GO:0001056 - RNA polymerase III activity [Evidence IDA] [PMID 3905793]; GO_process: GO:0042797 - tRNA transcription from RNA polymerase III promoter [Evidence IMP] [PMID 1406632]; GO_process: GO:0042797 - tRNA transcription from RNA polymerase III promoter [Evidence IDA] [PMID 3905793]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Rpc82p 2096969 RPC82 30034599 RPC82 Sugiyamaella lignohabitans Rpc82p XP_018737520.1 2095101 R 796027 CDS AWJ20_2664 30034600 2099213..2101870 B 1 NC_031674.1 serine/threonine protein kinase regulatory subunit ATG13 2101870 ATG13 30034600 ATG13 Sugiyamaella lignohabitans serine/threonine protein kinase regulatory subunit ATG13 XP_018737521.1 2099213 D 796027 CDS AWJ20_2665 30034601 complement(2103001..2103705) B 1 NC_031674.1 Polyamine transporter of the major facilitator superfamily; member of the 12-spanner drug:H(+) antiporter DHA1 family; specific for spermine; localizes to the plasma membrane; TPO3 has a paralog, TPO2, that arose from the whole genome duplication; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IMP] [PMID 11171066]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 12562762]; GO_function: GO:0015297 - antiporter activity [Evidence IEA]; GO_function: GO:0000297 - spermine transmembrane transporter activity [Evidence IMP] [PMID 11171066]; GO_process: GO:0000296 - spermine transport [Evidence IMP] [PMID 11171066]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Tpo3p 2103705 TPO3 30034601 TPO3 Sugiyamaella lignohabitans Tpo3p XP_018737522.1 2103001 R 796027 CDS AWJ20_2666 30034602 2106907..2108007 B 1 NC_031674.1 hypothetical protein; binds Las17p, which is a homolog of human Wiskott-Aldrich Syndrome protein involved in actin patch assembly and actin polymerization; may mediate disassembly of the Pan1 complex from the endocytic coat; GO_component: GO:0030479 - actin cortical patch [Evidence IDA] [PMID 15651983]; GO_component: GO:0005938 - cell cortex [Evidence IEA]; GO_component: GO:0005938 - cell cortex [Evidence IDA] [PMID 12388763]; GO_component: GO:0005938 - cell cortex [Evidence IDA] [PMID 15651983]; GO_component: GO:0005938 - cell cortex [Evidence IDA] [PMID 18298676]; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 18298676]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA,IEA]; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0051666 - actin cortical patch localization [Evidence IGI] [PMID 12388763]; GO_process: GO:0030036 - actin cytoskeleton organization [Evidence IGI] [PMID 12388763]; GO_process: GO:0007015 - actin filament organization [Evidence IPI] [PMID 10512884]; GO_process: GO:0006897 - endocytosis [Evidence IEA]; GO_process: GO:0006897 - endocytosis [Evidence IGI] [PMID 12388763]; GO_process: GO:0006886 - intracellular protein transport [Evidence IEA]; Lsb5p 2108007 LSB5 30034602 LSB5 Sugiyamaella lignohabitans Lsb5p XP_018737523.1 2106907 D 796027 CDS AWJ20_2667 30034603 complement(2109200..2112631) B 1 NC_031674.1 RNA polymerase II second largest subunit B150; part of central core; similar to bacterial beta subunit; GO_component: GO:0005665 - DNA-directed RNA polymerase II, core complex [Evidence IDA] [PMID 1331084]; GO_component: GO:0005665 - DNA-directed RNA polymerase II, core complex [Evidence IDA] [PMID 2183013]; GO_component: GO:0005665 - DNA-directed RNA polymerase II, core complex [Evidence IDA] [PMID 2186966]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0003899 - DNA-directed RNA polymerase activity [Evidence IEA,IEA,IEA]; GO_function: GO:0001055 - RNA polymerase II activity [Evidence IDA] [PMID 8288647]; GO_function: GO:0003968 - RNA-directed RNA polymerase activity [Evidence IDA] [PMID 18004386]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016779 - nucleotidyltransferase activity [Evidence IEA]; GO_function: GO:0032549 - ribonucleoside binding [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IMP] [PMID 2406558]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; DNA-directed RNA polymerase II core subunit RPB2 2112631 RPB2 30034603 RPB2 Sugiyamaella lignohabitans DNA-directed RNA polymerase II core subunit RPB2 XP_018737524.1 2109200 R 796027 CDS AWJ20_2668 30034604 2116068..2118698 B 1 NC_031674.1 Nuclear envelope protein that mediates the nuclear export of Srp1p; Srp1p (importin alpha) is a homolog of metazoan CAS protein; required for accurate chromosome segregation; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0005635 - nuclear envelope [Evidence IDA] [PMID 9857050]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0008536 - Ran GTPase binding [Evidence IEA]; GO_function: GO:0008262 - importin-alpha export receptor activity [Evidence IGI,IPI,ISS] [PMID 9857050]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0006886 - intracellular protein transport [Evidence IEA]; GO_process: GO:0007067 - mitotic nuclear division [Evidence IEA]; GO_process: GO:0006611 - protein export from nucleus [Evidence IGI,IPI] [PMID 9857050]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Cse1p 2118698 CSE1 30034604 CSE1 Sugiyamaella lignohabitans Cse1p XP_018737525.1 2116068 D 796027 CDS AWJ20_2669 30034605 complement(2119086..2119436) B 1 NC_031674.1 Putative subunit of the 90S preribosome processome complex; overexpression rescues supressor mutant of mcm10; null mutant is viable; relocalizes from nucleus to cytoplasm upon DNA replication stress; GO_component: GO:0030686 - 90S preribosome [Evidence IDA] [PMID 12150911]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; Cms1p 2119436 CMS1 30034605 CMS1 Sugiyamaella lignohabitans Cms1p XP_018737526.1 2119086 R 796027 CDS AWJ20_2670 30034607 complement(2119955..2121712) B 1 NC_031674.1 Small-subunit processome protein involved in pre-18S rRNA maturation; part of a subunit of the 90S preribosomal particle capable of interacting directly with the 5' ETS of the 35S pre-rRNA; contains WD40 repeats; GO_component: GO:0030686 - 90S preribosome [Evidence IDA] [PMID 12150911]; GO_component: GO:0034388 - Pwp2p-containing subcomplex of 90S preribosome [Evidence IDA] [PMID 15231838]; GO_component: GO:0034388 - Pwp2p-containing subcomplex of 90S preribosome [Evidence IDA] [PMID 17515605]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 15590835]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0032040 - small-subunit processome [Evidence IDA] [PMID 15590835]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0000480 - endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 15590835]; GO_process: GO:0000447 - endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 15590835]; GO_process: GO:0000472 - endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 15590835]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; Utp18p 2121712 UTP18 30034607 UTP18 Sugiyamaella lignohabitans Utp18p XP_018737527.1 2119955 R 796027 CDS AWJ20_2671 30034608 complement(2127015..2128733) B 1 NC_031674.1 Integral ER membrane protein with type-III transmembrane domains; required for maintenance of ER zinc homeostasis; necessary for efficient targeting of Trm1p tRNA methyltransferase to inner nuclear membrane; mutations cause defects in cortical ER morphology in both the mother and daughter cells; GO_component: GO:0032541 - cortical endoplasmic reticulum [Evidence IDA] [PMID 15585575]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 14562095]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0030176 - integral component of endoplasmic reticulum membrane [Evidence IDA] [PMID 15585575]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0097038 - perinuclear endoplasmic reticulum [Evidence IDA] [PMID 15585575]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006882 - cellular zinc ion homeostasis [Evidence IMP] [PMID 22685415]; GO_process: GO:0048309 - endoplasmic reticulum inheritance [Evidence IMP] [PMID 15585575]; GO_process: GO:0048309 - endoplasmic reticulum inheritance [Evidence IGI,IMP] [PMID 17984322]; GO_process: GO:0036228 - protein targeting to nuclear inner membrane [Evidence IMP] [PMID 15911569]; GO_process: GO:0000921 - septin ring assembly [Evidence IGI,IMP] [PMID 17984322]; Ice2p 2128733 ICE2 30034608 ICE2 Sugiyamaella lignohabitans Ice2p XP_018737528.1 2127015 R 796027 CDS AWJ20_2672 30034609 2129542..2131719 B 1 NC_031674.1 Nucleolar protein; required for 35S pre-RNA processing and 40S ribosomal subunit biogenesis; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 14690591]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 20528918]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14690591]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 20528918]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0032040 - small-subunit processome [Evidence IPI] [PMID 20528918]; GO_component: GO:0032040 - small-subunit processome [Evidence IDA] [PMID 20884785]; GO_function: GO:0034511 - U3 snoRNA binding [Evidence IDA] [PMID 20528918]; GO_function: GO:0019843 - rRNA binding [Evidence IDA] [PMID 20528918]; GO_process: GO:0000462 - maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 20528918]; GO_process: GO:0000462 - maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 20884785]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0042274 - ribosomal small subunit biogenesis [Evidence IMP,IPI] [PMID 19806183]; GO_process: GO:0042274 - ribosomal small subunit biogenesis [Evidence IMP] [PMID 20528918]; GO_process: GO:0042274 - ribosomal small subunit biogenesis [Evidence IMP] [PMID 20884785]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; Utp25p 2131719 UTP25 30034609 UTP25 Sugiyamaella lignohabitans Utp25p XP_018737529.1 2129542 D 796027 CDS AWJ20_2673 30034610 2132025..2133929 B 1 NC_031674.1 Leucyl aminopeptidase yscIV with epoxide hydrolase activity; metalloenzyme containing one zinc atom; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm and nucleus; also known as leukotriene A4 hydrolase; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0004177 - aminopeptidase activity [Evidence IDA] [PMID 10574934]; GO_function: GO:0004301 - epoxide hydrolase activity [Evidence IDA] [PMID 10574934]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0004463 - leukotriene-A4 hydrolase activity [Evidence IEA,IEA]; GO_function: GO:0004463 - leukotriene-A4 hydrolase activity [Evidence ISS] [PMID 10341423]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0008237 - metallopeptidase activity [Evidence IEA,IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0044255 - cellular lipid metabolic process [Evidence IMP] [PMID 10341423]; GO_process: GO:0044255 - cellular lipid metabolic process [Evidence IDA] [PMID 10574934]; GO_process: GO:0019370 - leukotriene biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0030163 - protein catabolic process [Evidence IDA] [PMID 10574934]; GO_process: GO:0006508 - proteolysis [Evidence IEA,IEA]; Lap2p 2133929 LAP2 30034610 LAP2 Sugiyamaella lignohabitans Lap2p XP_018737530.1 2132025 D 796027 CDS AWJ20_2674 30034611 complement(2134282..2135694) B 1 NC_031674.1 ubiquitin protease cofactor (predicted) 2135694 30034611 AWJ20_2674 Sugiyamaella lignohabitans ubiquitin protease cofactor (predicted) XP_018737531.1 2134282 R 796027 CDS AWJ20_2675 30034612 2138438..2140249 B 1 NC_031674.1 Phosphoribosylpyrophosphate amidotransferase (PRPPAT); catalyzes first step of the 'de novo' purine nucleotide biosynthetic pathway; also known as amidophosphoribosyltransferase; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0004044 - amidophosphoribosyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0004044 - amidophosphoribosyltransferase activity [Evidence IDA,IMP] [PMID 11689683]; GO_function: GO:0004044 - amidophosphoribosyltransferase activity [Evidence IMP] [PMID 6376509]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA]; GO_process: GO:0006189 - 'de novo' IMP biosynthetic process [Evidence IEA]; GO_process: GO:0006189 - 'de novo' IMP biosynthetic process [Evidence IMP] [PMID 11689683]; GO_process: GO:0006541 - glutamine metabolic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0009116 - nucleoside metabolic process [Evidence IEA]; GO_process: GO:0009113 - purine nucleobase biosynthetic process [Evidence IEA]; GO_process: GO:0006164 - purine nucleotide biosynthetic process [Evidence IEA]; amidophosphoribosyltransferase 2140249 ADE4 30034612 ADE4 Sugiyamaella lignohabitans amidophosphoribosyltransferase XP_018737532.1 2138438 D 796027 CDS AWJ20_2676 30034613 2147167..2149374 B 1 NC_031674.1 putative tyrosine protein phosphatase MIH1 2149374 MIH1 30034613 MIH1 Sugiyamaella lignohabitans putative tyrosine protein phosphatase MIH1 XP_018737533.1 2147167 D 796027 CDS AWJ20_2677 30034614 complement(2149829..2150656) B 1 NC_031674.1 uncharacterized protein 2150656 30034614 AWJ20_2677 Sugiyamaella lignohabitans uncharacterized protein XP_018737534.1 2149829 R 796027 CDS AWJ20_2678 30034615 complement(2151074..2153467) B 1 NC_031674.1 Nucleolar protein; component of the small subunit (SSU) processome containing the U3 snoRNA that is involved in processing of pre-18S rRNA; GO_component: GO:0030686 - 90S preribosome [Evidence IDA] [PMID 12150911]; GO_component: GO:0034388 - Pwp2p-containing subcomplex of 90S preribosome [Evidence IDA] [PMID 15231838]; GO_component: GO:0034388 - Pwp2p-containing subcomplex of 90S preribosome [Evidence IDA] [PMID 17515605]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 12068309]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0032040 - small-subunit processome [Evidence IEA]; GO_component: GO:0032040 - small-subunit processome [Evidence IDA] [PMID 12068309]; GO_function: GO:0030515 - snoRNA binding [Evidence IPI] [PMID 12068309]; GO_process: GO:0000480 - endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 15489292]; GO_process: GO:0000447 - endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 15489292]; GO_process: GO:0000472 - endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 15489292]; GO_process: GO:0000462 - maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 12068309]; GO_process: GO:0006364 - rRNA processing [Evidence IEA,IEA]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; Utp13p 2153467 UTP13 30034615 UTP13 Sugiyamaella lignohabitans Utp13p XP_018737535.1 2151074 R 796027 CDS AWJ20_2679 30034616 2155979..2156458 B 1 NC_031674.1 C-8 sterol isomerase; catalyzes the isomerization of the delta-8 double bond to the delta-7 position at an intermediate step in ergosterol biosynthesis; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IC] [PMID 18459942]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0000247 - C-8 sterol isomerase activity [Evidence IMP] [PMID 18459942]; GO_function: GO:0016853 - isomerase activity [Evidence IEA]; GO_process: GO:0006696 - ergosterol biosynthetic process [Evidence IMP] [PMID 18459942]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0006694 - steroid biosynthetic process [Evidence IEA]; GO_process: GO:0008202 - steroid metabolic process [Evidence IEA]; GO_process: GO:0016126 - sterol biosynthetic process [Evidence IEA,IEA]; C-8 sterol isomerase ERG2 2156458 ERG2 30034616 ERG2 Sugiyamaella lignohabitans C-8 sterol isomerase ERG2 XP_018737536.1 2155979 D 796027 CDS AWJ20_2680 30034618 join(2157231..2158128,2158324..2161178) B 1 NC_031674.1 Subunit of the SAGA transcriptional regulatory complex; involved in proper assembly of the complex; also present as a C-terminally truncated form in the SLIK/SALSA transcriptional regulatory complex; GO_component: GO:0000124 - SAGA complex [Evidence IDA] [PMID 9224714]; GO_component: GO:0000124 - SAGA complex [Evidence IDA] [PMID 9674426]; GO_component: GO:0046695 - SLIK (SAGA-like) complex [Evidence IDA] [PMID 12446794]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0005198 - structural molecule activity [Evidence IDA] [PMID 12101232]; GO_function: GO:0005198 - structural molecule activity [Evidence IMP] [PMID 9858534]; GO_process: GO:0016568 - chromatin modification [Evidence IDA] [PMID 9674426]; GO_process: GO:0000747 - conjugation with cellular fusion [Evidence IMP] [PMID 7713415]; GO_process: GO:0016573 - histone acetylation [Evidence IDA] [PMID 9674426]; GO_process: GO:0006461 - protein complex assembly [Evidence IMP] [PMID 12101232]; GO_process: GO:0006461 - protein complex assembly [Evidence IMP] [PMID 9858534]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; SAGA histone acetyltransferase complex subunit SPT7 2161178 SPT7 30034618 SPT7 Sugiyamaella lignohabitans SAGA histone acetyltransferase complex subunit SPT7 XP_018737537.1 2157231 D 796027 CDS AWJ20_2681 30034619 complement(2160461..2161123) B 1 NC_031674.1 uncharacterized protein 2161123 30034619 AWJ20_2681 Sugiyamaella lignohabitans uncharacterized protein XP_018737538.1 2160461 R 796027 CDS AWJ20_2682 30034620 complement(2161464..2163350) B 1 NC_031674.1 ER quality-control lectin; integral subunit of the HRD ligase; participates in efficient ER retention of misfolded proteins by recognizing them and delivering them to Hrd1p; binds to glycans with terminal alpha-1,6 linked mannose on misfolded N-glycosylated proteins and participates in targeting proteins to ERAD; member of the OS-9 protein family; GO_component: GO:0000839 - Hrd1p ubiquitin ligase ERAD-L complex [Evidence IPI] [PMID 16873066]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005788 - endoplasmic reticulum lumen [Evidence IDA] [PMID 16168371]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0034099 - luminal surveillance complex [Evidence IDA] [PMID 16873065]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0070492 - oligosaccharide binding [Evidence IDA] [PMID 19111666]; GO_process: GO:0030433 - ER-associated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 16168370]; GO_process: GO:0030433 - ER-associated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 16168371]; GO_process: GO:0030433 - ER-associated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 16168372]; GO_process: GO:0030433 - ER-associated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 22298424]; GO_process: GO:0030968 - endoplasmic reticulum unfolded protein response [Evidence IMP] [PMID 22298424]; GO_process: GO:0030970 - retrograde protein transport, ER to cytosol [Evidence IMP] [PMID 24292014]; Yos9p 2163350 YOS9 30034620 YOS9 Sugiyamaella lignohabitans Yos9p XP_018737539.1 2161464 R 796027 CDS AWJ20_2683 30034621 2163951..2165135 B 1 NC_031674.1 Mitochondrial ribosomal protein of the large subunit; GO_component: GO:0005762 - mitochondrial large ribosomal subunit [Evidence IPI] [PMID 12392552]; GO_component: GO:0005762 - mitochondrial large ribosomal subunit [Evidence IDA] [PMID 9151978]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IPI] [PMID 12392552]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IDA] [PMID 9151978]; GO_process: GO:0032543 - mitochondrial translation [Evidence IC] [PMID 12392552]; GO_process: GO:0032543 - mitochondrial translation [Evidence IC] [PMID 9151978]; mitochondrial 54S ribosomal protein YmL35 2165135 MRPL35 30034621 MRPL35 Sugiyamaella lignohabitans mitochondrial 54S ribosomal protein YmL35 XP_018737540.1 2163951 D 796027 CDS AWJ20_2684 30034622 2167056..2167634 B 1 NC_031674.1 uncharacterized protein 2167634 30034622 AWJ20_2684 Sugiyamaella lignohabitans uncharacterized protein XP_018737541.1 2167056 D 796027 CDS AWJ20_2685 30034623 2169500..2170405 B 1 NC_031674.1 uncharacterized protein 2170405 30034623 AWJ20_2685 Sugiyamaella lignohabitans uncharacterized protein XP_018737542.1 2169500 D 796027 CDS AWJ20_2686 30034624 complement(2170625..2172964) B 1 NC_031674.1 AAA ATPase and SNARE disassembly chaperone; required for vesicular transport between ER and Golgi, the 'priming' step in homotypic vacuole fusion, autophagy, and protein secretion; releases Sec17p from SNAP complexes; has similarity to mammalian N-ethylmaleimide-sensitive factor (NSF); GO_component: GO:0005794 - Golgi apparatus [Evidence IDA] [PMID 23613772]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 19053807]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016887 - ATPase activity [Evidence IDA] [PMID 10387016]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_process: GO:0043001 - Golgi to plasma membrane protein transport [Evidence IMP] [PMID 2071670]; GO_process: GO:0048211 - Golgi vesicle docking [Evidence IDA] [PMID 9382859]; GO_process: GO:0035494 - SNARE complex disassembly [Evidence IDA] [PMID 18650938]; GO_process: GO:0035494 - SNARE complex disassembly [Evidence IDA] [PMID 9425154]; GO_process: GO:0000045 - autophagic vacuole assembly [Evidence IMP] [PMID 11694599]; GO_process: GO:0048219 - inter-Golgi cisterna vesicle-mediated transport [Evidence IMP] [PMID 10637300]; GO_process: GO:0048219 - inter-Golgi cisterna vesicle-mediated transport [Evidence IMP] [PMID 2071670]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0042144 - vacuole fusion, non-autophagic [Evidence IDA] [PMID 8670830]; GO_process: GO:0042144 - vacuole fusion, non-autophagic [Evidence IDA] [PMID 9685264]; GO_process: GO:0048280 - vesicle fusion with Golgi apparatus [Evidence IDA] [PMID 9382859]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IEA]; AAA family ATPase SEC18 2172964 SEC18 30034624 SEC18 Sugiyamaella lignohabitans AAA family ATPase SEC18 XP_018737543.1 2170625 R 796027 CDS AWJ20_2687 30034625 complement(2176038..2179262) B 1 NC_031674.1 uncharacterized protein 2179262 30034625 AWJ20_2687 Sugiyamaella lignohabitans uncharacterized protein XP_018737544.1 2176038 R 796027 CDS AWJ20_2688 30034626 2181535..2181960 B 1 NC_031674.1 Fungal Genetics Stock Center 13762; NADH:ubiquinone oxidoreductase 18.4kD subunit 2181960 30034626 AWJ20_2688 Sugiyamaella lignohabitans NADH:ubiquinone oxidoreductase 18.4kD subunit XP_018737545.1 2181535 D 796027 CDS AWJ20_2689 30034627 2182686..2183363 B 1 NC_031674.1 uncharacterized protein 2183363 30034627 AWJ20_2689 Sugiyamaella lignohabitans uncharacterized protein XP_018737546.1 2182686 D 796027 CDS AWJ20_2690 30034629 complement(2190059..2194309) B 1 NC_031674.1 uncharacterized protein 2194309 30034629 AWJ20_2690 Sugiyamaella lignohabitans uncharacterized protein XP_018737547.1 2190059 R 796027 CDS AWJ20_2691 30034630 2195827..2196789 B 1 NC_031674.1 uncharacterized protein 2196789 30034630 AWJ20_2691 Sugiyamaella lignohabitans uncharacterized protein XP_018737548.1 2195827 D 796027 CDS AWJ20_2692 30034631 2197933..2198433 B 1 NC_031674.1 Subunit IV of cytochrome c oxidase; the terminal member of the mitochondrial inner membrane electron transport chain; precursor N-terminal 25 residues are cleaved during mitochondrial import; phosphorylated; spermidine enhances translation; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005740 - mitochondrial envelope [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005751 - mitochondrial respiratory chain complex IV [Evidence IPI] [PMID 1331058]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0004129 - cytochrome-c oxidase activity [Evidence IEA,IEA]; GO_function: GO:0004129 - cytochrome-c oxidase activity [Evidence IDA] [PMID 1331058]; GO_function: GO:0004129 - cytochrome-c oxidase activity [Evidence IDA] [PMID 7851399]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IDA] [PMID 17215247]; GO_process: GO:0009060 - aerobic respiration [Evidence IPI] [PMID 163235]; GO_process: GO:1902600 - hydrogen ion transmembrane transport [Evidence IEA,IEA]; GO_process: GO:0006123 - mitochondrial electron transport, cytochrome c to oxygen [Evidence IDA] [PMID 1331058]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; GO_process: GO:0006119 - oxidative phosphorylation [Evidence IEA]; cytochrome c oxidase subunit IV 2198433 COX4 30034631 COX4 Sugiyamaella lignohabitans cytochrome c oxidase subunit IV XP_018737549.1 2197933 D 796027 CDS AWJ20_2693 30034632 2199899..2200261 B 1 NC_031674.1 Protein component of the small (40S) ribosomal subunit; homologous to mammalian ribosomal protein S26, no bacterial homolog; RPS26B has a paralog, RPS26A, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0022627 - cytosolic small ribosomal subunit [Evidence NAS] [PMID 9559554]; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA,IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence NAS] [PMID 9559554]; GO_process: GO:0002181 - cytoplasmic translation [Evidence NAS] [PMID 9559554]; GO_process: GO:0006407 - rRNA export from nucleus [Evidence IGI] [PMID 16246728]; GO_process: GO:0006412 - translation [Evidence IEA]; ribosomal 40S subunit protein S26B 2200261 RPS26B 30034632 RPS26B Sugiyamaella lignohabitans ribosomal 40S subunit protein S26B XP_018737550.1 2199899 D 796027 CDS AWJ20_2694 30034633 complement(2204301..2206655) B 1 NC_031674.1 Component of the RSC chromatin remodeling complex; required for expression of mid-late sporulation-specific genes; involved in telomere maintenance; RSC2 has a paralog, RSC1, that arose from the whole genome duplication; GO_component: GO:0016586 - RSC complex [Evidence IDA] [PMID 10619019]; GO_component: GO:0016586 - RSC complex [Evidence IDA] [PMID 12183366]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0015616 - DNA translocase activity [Evidence IDA] [PMID 12183366]; GO_function: GO:0015616 - DNA translocase activity [Evidence IDA] [PMID 16455496]; GO_function: GO:0015616 - DNA translocase activity [Evidence IDA] [PMID 17188033]; GO_function: GO:0015616 - DNA translocase activity [Evidence IDA] [PMID 17918861]; GO_function: GO:0003682 - chromatin binding [Evidence IEA]; GO_process: GO:0043044 - ATP-dependent chromatin remodeling [Evidence IDA] [PMID 12183366]; GO_process: GO:0016568 - chromatin modification [Evidence IEA]; GO_process: GO:0007059 - chromosome segregation [Evidence IGI] [PMID 14729968]; GO_process: GO:0000724 - double-strand break repair via homologous recombination [Evidence IMP] [PMID 16024655]; GO_process: GO:0006303 - double-strand break repair via nonhomologous end joining [Evidence IPI] [PMID 15870268]; GO_process: GO:0006337 - nucleosome disassembly [Evidence IDA] [PMID 16492771]; GO_process: GO:0006276 - plasmid maintenance [Evidence IMP] [PMID 12024034]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0007062 - sister chromatid cohesion [Evidence IMP] [PMID 14729968]; GO_process: GO:0030435 - sporulation resulting in formation of a cellular spore [Evidence IEA]; GO_process: GO:0006368 - transcription elongation from RNA polymerase II promoter [Evidence IDA] [PMID 17081996]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Rsc2p 2206655 RSC2 30034633 RSC2 Sugiyamaella lignohabitans Rsc2p XP_018737551.1 2204301 R 796027 CDS AWJ20_2695 30034634 complement(2207222..2208403) B 1 NC_031674.1 Cell wall protein with similarity to glucanases; scw4 scw10 double mutants exhibit defects in mating; SCW4 has a paralog, SCW10, that arose from the whole genome duplication; GO_component: GO:0005618 - cell wall [Evidence IEA,IEA]; GO_component: GO:0005576 - extracellular region [Evidence IEA]; GO_component: GO:0005576 - extracellular region [Evidence IDA] [PMID 19129178]; GO_component: GO:0009277 - fungal-type cell wall [Evidence IDA] [PMID 15781460]; GO_component: GO:0009277 - fungal-type cell wall [Evidence IDA] [PMID 9748433]; GO_component: GO:0005773 - vacuole [Evidence IDA] [PMID 23222640]; GO_function: GO:0015926 - glucosidase activity [Evidence ISS] [PMID 9748433]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016798 - hydrolase activity, acting on glycosyl bonds [Evidence IEA]; GO_function: GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_process: GO:0005975 - carbohydrate metabolic process [Evidence IEA]; GO_process: GO:0000747 - conjugation with cellular fusion [Evidence IGI] [PMID 9748433]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; Scw4p 2208403 SCW4 30034634 SCW4 Sugiyamaella lignohabitans Scw4p XP_018737552.1 2207222 R 796027 CDS AWJ20_2696 30034635 2216417..2217448 B 1 NC_031674.1 Saccharopine dehydrogenase (NADP+, L-glutamate-forming); catalyzes the formation of saccharopine from alpha-aminoadipate 6-semialdehyde, the seventh step in lysine biosynthesis pathway; exhibits genetic and physical interactions with TRM112; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0004755 - saccharopine dehydrogenase (NADP+, L-glutamate-forming) activity [Evidence IEA]; GO_function: GO:0004755 - saccharopine dehydrogenase (NADP+, L-glutamate-forming) activity [Evidence IDA] [PMID 18416559]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0009085 - lysine biosynthetic process [Evidence IEA]; GO_process: GO:0019878 - lysine biosynthetic process via aminoadipic acid [Evidence IEA]; GO_process: GO:0019878 - lysine biosynthetic process via aminoadipic acid [Evidence IMP] [PMID 6429126]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; saccharopine dehydrogenase (NADP+, L-glutamate-forming) 2217448 LYS9 30034635 LYS9 Sugiyamaella lignohabitans saccharopine dehydrogenase (NADP+, L-glutamate-forming) XP_018737553.1 2216417 D 796027 CDS AWJ20_2697 30034636 complement(2217747..2218358) B 1 NC_031674.1 Pre-mRNA-splicing factor 38A 2218358 30034636 AWJ20_2697 Sugiyamaella lignohabitans Pre-mRNA-splicing factor 38A XP_018737554.1 2217747 R 796027 CDS AWJ20_2698 30034637 2225861..2226976 B 1 NC_031674.1 uncharacterized protein 2226976 30034637 AWJ20_2698 Sugiyamaella lignohabitans uncharacterized protein XP_018737555.1 2225861 D 796027 CDS AWJ20_2699 30034638 2229484..2230920 B 1 NC_031674.1 Chitin transglycosylase; functions in the transfer of chitin to beta(1-6) and beta(1-3) glucans in the cell wall; similar to and functionally redundant with Crh1; glycosylphosphatidylinositol (GPI)-anchored protein localized to bud neck; GO_component: GO:0031225 - anchored component of membrane [Evidence IEA]; GO_component: GO:0005618 - cell wall [Evidence IEA,IEA,IEA]; GO_component: GO:0000144 - cellular bud neck septin ring [Evidence IDA] [PMID 12045225]; GO_component: GO:0005576 - extracellular region [Evidence IEA]; GO_component: GO:0009277 - fungal-type cell wall [Evidence IDA] [PMID 10383953]; GO_component: GO:0009277 - fungal-type cell wall [Evidence IDA] [PMID 15781460]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016798 - hydrolase activity, acting on glycosyl bonds [Evidence IEA]; GO_function: GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]; GO_function: GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IGI,IMP] [PMID 18694928]; GO_function: GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IDA] [PMID 23919454]; GO_process: GO:0005975 - carbohydrate metabolic process [Evidence IEA]; GO_process: GO:0006037 - cell wall chitin metabolic process [Evidence IGI,IMP] [PMID 18694928]; GO_process: GO:0071555 - cell wall organization [Evidence IEA]; GO_process: GO:0031505 - fungal-type cell wall organization [Evidence IGI,IMP] [PMID 18694928]; Utr2p 2230920 UTR2 30034638 UTR2 Sugiyamaella lignohabitans Utr2p XP_018737556.1 2229484 D 796027 CDS AWJ20_2700 30034641 2235521..2238304 B 1 NC_031674.1 putative serine/threonine protein kinase KIN4 2238304 KIN4 30034641 KIN4 Sugiyamaella lignohabitans putative serine/threonine protein kinase KIN4 XP_018737557.1 2235521 D 796027 CDS AWJ20_2701 30034642 2239053..2242052 B 1 NC_031674.1 Multi-spanning vacuolar membrane protease; glycosylated transmembrane protein bearing homology to the M28 family of metalloproteases; has a lumenal-facing protease domain; proposed role in vacuole physiology; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 19001347]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 23679341]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0008237 - metallopeptidase activity [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0008233 - peptidase activity [Evidence IEA,IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0006508 - proteolysis [Evidence IEA,IEA]; Pff1p 2242052 PFF1 30034642 PFF1 Sugiyamaella lignohabitans Pff1p XP_018737558.1 2239053 D 796027 CDS AWJ20_2702 30034643 complement(2242089..2242769) B 1 NC_031674.1 uncharacterized protein 2242769 30034643 AWJ20_2702 Sugiyamaella lignohabitans uncharacterized protein XP_018737559.1 2242089 R 796027 CDS AWJ20_2703 30034644 complement(2243038..2243835) B 1 NC_031674.1 Small heat shock protein (sHSP) with chaperone activity; forms barrel-shaped oligomers that suppress unfolded protein aggregation; involved in cytoskeleton reorganization after heat shock; protein abundance increases and forms cytoplasmic foci in response to DNA replication stress; GO_component: GO:0005832 - chaperonin-containing T-complex [Evidence IPI] [PMID 15704212]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005856 - cytoskeleton [Evidence IPI] [PMID 8576246]; GO_function: GO:0051082 - unfolded protein binding [Evidence ISS] [PMID 8576246]; GO_process: GO:0007010 - cytoskeleton organization [Evidence IGI,IMP] [PMID 9199338]; GO_process: GO:0006950 - response to stress [Evidence IEA]; Hsp42p 2243835 HSP42 30034644 HSP42 Sugiyamaella lignohabitans Hsp42p XP_018737560.1 2243038 R 796027 CDS AWJ20_2704 30034645 complement(2244424..2245230) B 1 NC_031674.1 Uroporphyrinogen decarboxylase; catalyzes the fifth step in the heme biosynthetic pathway; localizes to both the cytoplasm and nucleus; a hem12 mutant has phenotypes similar to patients with porphyria cutanea tarda; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0016831 - carboxy-lyase activity [Evidence IEA]; GO_function: GO:0016829 - lyase activity [Evidence IEA]; GO_function: GO:0004853 - uroporphyrinogen decarboxylase activity [Evidence IEA,IEA]; GO_function: GO:0004853 - uroporphyrinogen decarboxylase activity [Evidence IDA] [PMID 2180703]; GO_function: GO:0004853 - uroporphyrinogen decarboxylase activity [Evidence IMP] [PMID 7035824]; GO_process: GO:0006783 - heme biosynthetic process [Evidence IEA]; GO_process: GO:0006783 - heme biosynthetic process [Evidence IMP] [PMID 14559249]; GO_process: GO:0006783 - heme biosynthetic process [Evidence IMP] [PMID 1471989]; GO_process: GO:0006783 - heme biosynthetic process [Evidence IMP] [PMID 7035824]; GO_process: GO:0006779 - porphyrin-containing compound biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0006782 - protoporphyrinogen IX biosynthetic process [Evidence IEA]; uroporphyrinogen decarboxylase HEM12 2245230 HEM12 30034645 HEM12 Sugiyamaella lignohabitans uroporphyrinogen decarboxylase HEM12 XP_018737561.1 2244424 R 796027 CDS AWJ20_2705 30034646 complement(2246172..2246765) B 1 NC_031674.1 hypothetical protein; similar to methyltransferase family members; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm; required for replication of Brome mosaic virus in S. cerevisiae; expresses a circular RNA; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0008168 - methyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0008168 - methyltransferase activity [Evidence ISS] [PMID 15225602]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0032259 - methylation [Evidence IEA,IEA]; Aml1p 2246765 AML1 30034646 AML1 Sugiyamaella lignohabitans Aml1p XP_018737562.1 2246172 R 796027 CDS AWJ20_2706 30034647 complement(2250014..2250352) B 1 NC_031674.1 protein kinase PKP1 2250352 PKP1 30034647 PKP1 Sugiyamaella lignohabitans protein kinase PKP1 XP_018737563.1 2250014 R 796027 CDS AWJ20_2707 30034648 complement(2252335..2252691) B 1 NC_031674.1 Subunit of the import motor (PAM complex); the PAM complex is a component of the Translocase of the Inner Mitochondrial membrane (TIM23 complex); forms a 1:1 subcomplex with Pam18p and inhibits its cochaperone activity; contains a J-like domain; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005744 - mitochondrial inner membrane presequence translocase complex [Evidence IEA]; GO_component: GO:0005744 - mitochondrial inner membrane presequence translocase complex [Evidence IDA] [PMID 14981506]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0001405 - presequence translocase-associated import motor [Evidence IDA] [PMID 14981506]; GO_component: GO:0001405 - presequence translocase-associated import motor [Evidence IDA] [PMID 14981507]; GO_function: GO:0019904 - protein domain specific binding [Evidence IDA] [PMID 16105940]; GO_process: GO:0030150 - protein import into mitochondrial matrix [Evidence IEA]; GO_process: GO:0030150 - protein import into mitochondrial matrix [Evidence IMP,IPI] [PMID 14981506]; GO_process: GO:0030150 - protein import into mitochondrial matrix [Evidence IMP,IPI] [PMID 14981507]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Pam16p 2252691 PAM16 30034648 PAM16 Sugiyamaella lignohabitans Pam16p XP_018737564.1 2252335 R 796027 CDS AWJ20_2708 30034649 2254886..2258131 B 1 NC_031674.1 histone-binding protein SET3 2258131 SET3 30034649 SET3 Sugiyamaella lignohabitans histone-binding protein SET3 XP_018737565.1 2254886 D 796027 CDS AWJ20_2709 30034650 2260980..2262635 B 1 NC_031674.1 uncharacterized protein 2262635 30034650 AWJ20_2709 Sugiyamaella lignohabitans uncharacterized protein XP_018737566.1 2260980 D 796027 CDS AWJ20_2710 30034652 2263137..2264135 B 1 NC_031674.1 Cytoplasmic protein required for correct processing of 20S pre-rRNA; protein required for processing of the 20S pre-rRNA at site D to generate mature 18S rRNA; essential gene in S288C background but not in CEN.PK2; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0030490 - maturation of SSU-rRNA [Evidence IMP] [PMID 19806183]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; Tsr4p 2264135 TSR4 30034652 TSR4 Sugiyamaella lignohabitans Tsr4p XP_018737567.1 2263137 D 796027 CDS AWJ20_2711 30034653 complement(2264294..2266870) B 1 NC_031674.1 Mitochondrial translation initiation factor 2; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 11914276]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IMP] [PMID 1935960]; GO_function: GO:0005525 - GTP binding [Evidence IEA,IEA]; GO_function: GO:0003924 - GTPase activity [Evidence IEA]; GO_function: GO:0003924 - GTPase activity [Evidence IDA] [PMID 12729623]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0000049 - tRNA binding [Evidence IDA] [PMID 12729623]; GO_function: GO:0003743 - translation initiation factor activity [Evidence IEA,IEA]; GO_function: GO:0003743 - translation initiation factor activity [Evidence IDA] [PMID 15935987]; GO_function: GO:0003743 - translation initiation factor activity [Evidence ISA] [PMID 1935960]; GO_process: GO:0006184 - GTP catabolic process [Evidence IEA]; GO_process: GO:0032543 - mitochondrial translation [Evidence IMP] [PMID 1935960]; GO_process: GO:0070124 - mitochondrial translational initiation [Evidence IC] [PMID 15935987]; GO_process: GO:0006412 - translation [Evidence IEA]; GO_process: GO:0006413 - translational initiation [Evidence IEA,IEA]; GO_process: GO:0006413 - translational initiation [Evidence ISA] [PMID 1935960]; translation initiation factor 2 2266870 IFM1 30034653 IFM1 Sugiyamaella lignohabitans translation initiation factor 2 XP_018737568.1 2264294 R 796027 CDS AWJ20_2712 30034654 2269312..2271042 B 1 NC_031674.1 GABA (gamma-aminobutyrate) permease; serves as a GABA transport protein involved in the utilization of GABA as a nitrogen source; catalyzes the transport of putrescine and delta-aminolevulinic acid (ALA); localized to the vacuolar membrane; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 14985124]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0015171 - amino acid transmembrane transporter activity [Evidence IEA]; GO_function: GO:0015495 - gamma-aminobutyric acid:proton symporter activity [Evidence IGI] [PMID 8455553]; GO_function: GO:0015489 - putrescine transmembrane transporter activity [Evidence IGI] [PMID 14985124]; GO_process: GO:0003333 - amino acid transmembrane transport [Evidence IEA]; GO_process: GO:0006865 - amino acid transport [Evidence IEA]; GO_process: GO:0015812 - gamma-aminobutyric acid transport [Evidence IGI] [PMID 14985124]; GO_process: GO:0015812 - gamma-aminobutyric acid transport [Evidence IEP,IGI] [PMID 8455553]; GO_process: GO:0015847 - putrescine transport [Evidence IGI] [PMID 14985124]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IGI] [PMID 8455553]; GO_process: GO:0006810 - transport [Evidence IEA]; Uga4p 2271042 UGA4 30034654 UGA4 Sugiyamaella lignohabitans Uga4p XP_018737569.1 2269312 D 796027 CDS AWJ20_2713 30034655 complement(2271297..2273318) B 1 NC_031674.1 protein serine/threonine kinase activating protein DBF4 2273318 DBF4 30034655 DBF4 Sugiyamaella lignohabitans protein serine/threonine kinase activating protein DBF4 XP_018737570.1 2271297 R 796027 CDS AWJ20_2714 30034656 complement(2274164..2274775) B 1 NC_031674.1 Protein with similarity to a family of flavodoxin-like proteins; induced by oxidative stress in a Yap1p dependent manner; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies; protein abundance increases in response to DNA replication stress; PST2 has a paralog, RFS1, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005576 - extracellular region [Evidence IEA,IEA]; GO_component: GO:0045121 - membrane raft [Evidence IDA] [PMID 19064668]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 16622836]; GO_function: GO:0010181 - FMN binding [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0045892 - negative regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; Pst2p 2274775 PST2 30034656 PST2 Sugiyamaella lignohabitans Pst2p XP_018737571.1 2274164 R 796027 CDS AWJ20_2715 30034657 2277733..2278674 B 1 NC_031674.1 Putative kinase with similarity to the PRK/URK/PANK kinase subfamily; the PRK/URK/PANK subfamily of P-loop kinases is also known as phosphoribulokinase/uridine kinase/bacterial pantothenate kinase; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0016887 - ATPase activity [Evidence IDA] [PMID 18004758]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0016301 - kinase activity [Evidence ISS] [PMID 18004758]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; GO_process: GO:0016310 - phosphorylation [Evidence ISS] [PMID 18004758]; Yfh7p 2278674 YFH7 30034657 YFH7 Sugiyamaella lignohabitans Yfh7p XP_018737572.1 2277733 D 796027 CDS AWJ20_2716 30034658 complement(2279564..2279887) B 1 NC_031674.1 uncharacterized protein 2279887 30034658 AWJ20_2716 Sugiyamaella lignohabitans uncharacterized protein XP_018737573.1 2279564 R 796027 CDS AWJ20_2717 30034659 2281030..2282052 B 1 NC_031674.1 Putative ortholog of mammalian ETF-alpha; interacts with frataxin, Yfh1p; null mutant displays elevated frequency of mitochondrial genome loss; may have a role in oxidative stress response; ETF-alpha is an electron transfer flavoprotein complex subunit; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 11502169]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 17054397]; GO_function: GO:0009055 - electron carrier activity [Evidence IEA]; GO_function: GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; Aim45p 2282052 AIM45 30034659 AIM45 Sugiyamaella lignohabitans Aim45p XP_018737574.1 2281030 D 796027 CDS AWJ20_2718 30034660 2282469..2283743 B 1 NC_031674.1 Acetylornithine aminotransferase; catalyzes the fourth step in the biosynthesis of the arginine precursor ornithine; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA]; GO_component: GO:0005759 - mitochondrial matrix [Evidence IDA] [PMID 205532]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0003992 - N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity [Evidence IEA]; GO_function: GO:0003992 - N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity [Evidence IDA] [PMID 2199330]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0030170 - pyridoxal phosphate binding [Evidence IEA]; GO_function: GO:0008483 - transaminase activity [Evidence IEA,IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006526 - arginine biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0006526 - arginine biosynthetic process [Evidence TAS] [PMID 12603335]; GO_process: GO:0006525 - arginine metabolic process [Evidence IEA]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0006592 - ornithine biosynthetic process [Evidence TAS] [PMID 205532]; acetylornithine transaminase 2283743 ARG8 30034660 ARG8 Sugiyamaella lignohabitans acetylornithine transaminase XP_018737575.1 2282469 D 796027 CDS AWJ20_2719 30034661 complement(2284068..2284568) B 1 NC_031674.1 uncharacterized protein 2284568 30034661 AWJ20_2719 Sugiyamaella lignohabitans uncharacterized protein XP_018737576.1 2284068 R 796027 CDS AWJ20_2720 30034663 2287211..2290492 B 1 NC_031674.1 Glycerophosphocholine (GroPCho) phosphodiesterase; hydrolyzes GroPCho to choline and glycerolphosphate, for use as a phosphate source and as a precursor for phosphocholine synthesis; may interact with ribosomes; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005840 - ribosome [Evidence IDA] [PMID 16702403]; GO_function: GO:0047389 - glycerophosphocholine phosphodiesterase activity [Evidence IMP,ISS] [PMID 16141200]; GO_function: GO:0008889 - glycerophosphodiester phosphodiesterase activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0008081 - phosphoric diester hydrolase activity [Evidence IEA]; GO_process: GO:0006071 - glycerol metabolic process [Evidence IEA]; GO_process: GO:0046475 - glycerophospholipid catabolic process [Evidence IMP,ISS] [PMID 16141200]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; Gde1p 2290492 GDE1 30034663 GDE1 Sugiyamaella lignohabitans Gde1p XP_018737577.1 2287211 D 796027 CDS AWJ20_2721 30034664 complement(2290708..2291499) B 1 NC_031674.1 RNA-binding protein Vip1 2291499 vip1 30034664 vip1 Sugiyamaella lignohabitans RNA-binding protein Vip1 XP_018737578.1 2290708 R 796027 CDS AWJ20_2722 30034665 2292396..2295029 B 1 NC_031674.1 ATP-binding protein required for mismatch repair; required for both mitosis and meiosis; functions as a heterodimer with Mlh1p; binds double- and single-stranded DNA via its N-terminal domain, similar to E. coli MutL; GO_component: GO:0032389 - MutLalpha complex [Evidence IEA]; GO_component: GO:0032389 - MutLalpha complex [Evidence IPI] [PMID 10570173]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0005524 - ATP binding [Evidence IMP] [PMID 10938116]; GO_function: GO:0016887 - ATPase activity [Evidence IDA,IMP] [PMID 11717305]; GO_function: GO:0032135 - DNA insertion or deletion binding [Evidence IDA] [PMID 9368761]; GO_function: GO:0032139 - dinucleotide insertion or deletion binding [Evidence IDA] [PMID 9368761]; GO_function: GO:0003690 - double-stranded DNA binding [Evidence IDA] [PMID 11575920]; GO_function: GO:0000404 - heteroduplex DNA loop binding [Evidence IDA] [PMID 9368761]; GO_function: GO:0030983 - mismatched DNA binding [Evidence IEA]; GO_function: GO:0003697 - single-stranded DNA binding [Evidence IDA] [PMID 11575920]; GO_process: GO:0006281 - DNA repair [Evidence IEA]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0000710 - meiotic mismatch repair [Evidence IMP] [PMID 16702432]; GO_process: GO:0006298 - mismatch repair [Evidence IEA]; GO_process: GO:0006298 - mismatch repair [Evidence IMP] [PMID 2685551]; GO_process: GO:0007131 - reciprocal meiotic recombination [Evidence IBA]; Pms1p 2295029 PMS1 30034665 PMS1 Sugiyamaella lignohabitans Pms1p XP_018737579.1 2292396 D 796027 CDS AWJ20_2723 30034666 complement(2295128..2296129) B 1 NC_031674.1 Subunit of heteropentameric Replication factor C (RF-C); RF-C is a DNA binding protein and ATPase that acts as a clamp loader of the proliferating cell nuclear antigen (PCNA) processivity factor for DNA polymerases delta and epsilon; GO_component: GO:0031390 - Ctf18 RFC-like complex [Evidence IPI] [PMID 11389843]; GO_component: GO:0005663 - DNA replication factor C complex [Evidence IDA] [PMID 8202350]; GO_component: GO:0031391 - Elg1 RFC-like complex [Evidence IPI] [PMID 12912927]; GO_component: GO:0031389 - Rad17 RFC-like complex [Evidence IDA] [PMID 12604797]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 23613772]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0003689 - DNA clamp loader activity [Evidence IDA] [PMID 12604797]; GO_function: GO:0003689 - DNA clamp loader activity [Evidence IDA] [PMID 8995429]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_function: GO:0017076 - purine nucleotide binding [Evidence ISS] [PMID 7651383]; GO_process: GO:0006260 - DNA replication [Evidence IEA,IEA]; GO_process: GO:0000076 - DNA replication checkpoint [Evidence IMP] [PMID 9671499]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0006272 - leading strand elongation [Evidence IDA] [PMID 1346062]; GO_process: GO:0006298 - mismatch repair [Evidence TAS] [PMID 10072354]; GO_process: GO:0007062 - sister chromatid cohesion [Evidence IPI] [PMID 11389843]; replication factor C subunit 2 2296129 RFC2 30034666 RFC2 Sugiyamaella lignohabitans replication factor C subunit 2 XP_018737580.1 2295128 R 796027 CDS AWJ20_2724 30034667 2297177..2299162 B 1 NC_031674.1 Putative GTPase involved in 60S ribosomal subunit biogenesis; required for the release of Nmd3p from 60S subunits in the cytoplasm; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 12773575]; GO_component: GO:0022625 - cytosolic large ribosomal subunit [Evidence IDA] [PMID 12773575]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 19053807]; GO_function: GO:0005525 - GTP binding [Evidence IEA,IEA]; GO_function: GO:0003924 - GTPase activity [Evidence ISS] [PMID 16209721]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0030437 - ascospore formation [Evidence IMP] [PMID 10669874]; GO_process: GO:0000747 - conjugation with cellular fusion [Evidence IMP] [PMID 10669874]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0000027 - ribosomal large subunit assembly [Evidence IMP] [PMID 20670889]; GO_process: GO:0000054 - ribosomal subunit export from nucleus [Evidence IMP,IPI] [PMID 12773575]; GO_process: GO:0006810 - transport [Evidence IEA]; putative GTPase LSG1 2299162 LSG1 30034667 LSG1 Sugiyamaella lignohabitans putative GTPase LSG1 XP_018737581.1 2297177 D 796027 CDS AWJ20_2725 30034668 2299532..2300143 B 1 NC_031674.1 Essential SNARE protein localized to the ER; involved in retrograde traffic from the Golgi to the ER; forms a complex with the SNAREs Sec22p, Sec20p and Ufe1p; GO_component: GO:0031201 - SNARE complex [Evidence IDA,ISM] [PMID 12853481]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0071458 - integral component of cytoplasmic side of endoplasmic reticulum membrane [Evidence IDA] [PMID 12893879]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0005484 - SNAP receptor activity [Evidence ISA] [PMID 12853481]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006890 - retrograde vesicle-mediated transport, Golgi to ER [Evidence IMP] [PMID 12853481]; GO_process: GO:0006890 - retrograde vesicle-mediated transport, Golgi to ER [Evidence IMP] [PMID 12893879]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0048279 - vesicle fusion with endoplasmic reticulum [Evidence IC] [PMID 12853481]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IEA]; Use1p 2300143 USE1 30034668 USE1 Sugiyamaella lignohabitans Use1p XP_018737582.1 2299532 D 796027 CDS AWJ20_2726 30034669 complement(2300475..2303342) B 1 NC_031674.1 DNA-binding transcription factor CAT8 2303342 CAT8 30034669 CAT8 Sugiyamaella lignohabitans DNA-binding transcription factor CAT8 XP_018737583.1 2300475 R 796027 CDS AWJ20_2727 30034670 complement(2306622..2307161) B 1 NC_031674.1 Condensin complex subunit 3 2307161 30034670 AWJ20_2727 Sugiyamaella lignohabitans Condensin complex subunit 3 XP_018737584.1 2306622 R 796027 CDS AWJ20_2728 30034671 complement(2307296..2309251) B 1 NC_031674.1 Subunit of the condensin complex; required for establishment and maintenance of chromosome condensation, chromosome segregation and chromatin binding of the condensin complex; required for clustering of tRNA genes at the nucleolus; required for replication slow zone (RSZ) breakage following Mec1p inactivation; GO_component: GO:0005694 - chromosome [Evidence IEA,IEA]; GO_component: GO:0000796 - condensin complex [Evidence IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0000799 - nuclear condensin complex [Evidence IGI,ISS] [PMID 10749931]; GO_component: GO:0000799 - nuclear condensin complex [Evidence IDA] [PMID 10811823]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0003682 - chromatin binding [Evidence IGI] [PMID 11864994]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0030261 - chromosome condensation [Evidence IEA]; GO_process: GO:0010032 - meiotic chromosome condensation [Evidence IMP] [PMID 14662740]; GO_process: GO:0051307 - meiotic chromosome separation [Evidence IMP] [PMID 14662740]; GO_process: GO:0007076 - mitotic chromosome condensation [Evidence IEA]; GO_process: GO:0007076 - mitotic chromosome condensation [Evidence IGI] [PMID 10749931]; GO_process: GO:0007076 - mitotic chromosome condensation [Evidence IMP] [PMID 11864994]; GO_process: GO:0007067 - mitotic nuclear division [Evidence IEA]; GO_process: GO:0000070 - mitotic sister chromatid segregation [Evidence IMP] [PMID 11864994]; GO_process: GO:0070550 - rDNA condensation [Evidence IMP] [PMID 18708580]; GO_process: GO:0007130 - synaptonemal complex assembly [Evidence IMP] [PMID 14662740]; GO_process: GO:0070058 - tRNA gene clustering [Evidence IMP] [PMID 18708579]; Ycg1p 2309251 YCG1 30034671 YCG1 Sugiyamaella lignohabitans Ycg1p XP_018737585.1 2307296 R 796027 CDS AWJ20_2729 30034672 2309725..2310987 B 1 NC_031674.1 Subunit 2 of ubiquinol cytochrome-c reductase (Complex III); Complex III is a component of the mitochondrial inner membrane electron transport chain; phosphorylated; transcription is regulated by Hap1p, Hap2p/Hap3p, and heme; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0030061 - mitochondrial crista [Evidence IDA] [PMID 19019989]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005750 - mitochondrial respiratory chain complex III [Evidence IDA] [PMID 10873857]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 11502169]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 11914276]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0070469 - respiratory chain [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004222 - metalloendopeptidase activity [Evidence IEA]; GO_function: GO:0008121 - ubiquinol-cytochrome-c reductase activity [Evidence IMP] [PMID 3028797]; GO_process: GO:0009060 - aerobic respiration [Evidence IMP] [PMID 3028797]; GO_process: GO:0006122 - mitochondrial electron transport, ubiquinol to cytochrome c [Evidence IDA] [PMID 3028797]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; GO_process: GO:0006508 - proteolysis [Evidence IEA]; ubiquinol--cytochrome-c reductase subunit 2 2310987 QCR2 30034672 QCR2 Sugiyamaella lignohabitans ubiquinol--cytochrome-c reductase subunit 2 XP_018737586.1 2309725 D 796027 CDS AWJ20_2730 30034674 complement(2311208..2315035) B 1 NC_031674.1 Ski complex component and TPR protein; mediates 3'-5' RNA degradation by the cytoplasmic exosome; null mutants have superkiller phenotype of increased viral dsRNAs and are synthetic lethal with mutations in 5'-3' mRNA decay; mutations in the human ortholog, TTC37, causes Syndromic diarrhea/Trichohepatoenteric (SD/THE) syndrome; GO_component: GO:0055087 - Ski complex [Evidence IDA] [PMID 10744028]; GO_component: GO:0055087 - Ski complex [Evidence IDA,IPI] [PMID 18042677]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0051607 - defense response to virus [Evidence IEA]; GO_process: GO:0070478 - nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay [Evidence IGI,IMP] [PMID 12881429]; GO_process: GO:0034427 - nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5' [Evidence IMP] [PMID 10611222]; GO_process: GO:0034427 - nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5' [Evidence IMP] [PMID 9482746]; GO_process: GO:0070481 - nuclear-transcribed mRNA catabolic process, non-stop decay [Evidence IMP] [PMID 11910110]; GO_process: GO:0070481 - nuclear-transcribed mRNA catabolic process, non-stop decay [Evidence IMP] [PMID 17660569]; SKI complex subunit tetratricopeptide repeat protein SKI3 2315035 SKI3 30034674 SKI3 Sugiyamaella lignohabitans SKI complex subunit tetratricopeptide repeat protein SKI3 XP_018737587.1 2311208 R 796027 CDS AWJ20_2731 30034675 2317626..2318966 B 1 NC_031674.1 Fungal Genetics Stock Center 13768; peroxisomal biogenesis factor 2 2318966 30034675 AWJ20_2731 Sugiyamaella lignohabitans peroxisomal biogenesis factor 2 XP_018737588.1 2317626 D 796027 CDS AWJ20_2732 30034676 complement(2319154..2320662) B 1 NC_031674.1 DNA ligase found in the nucleus and mitochondria; an essential enzyme that joins Okazaki fragments during DNA replication; also acts in ribonucleotide excision repair, base excision repair, and recombination; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA,IMP] [PMID 10531002]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 10531002]; GO_component: GO:0005657 - replication fork [Evidence NAS] [PMID 9759502]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0003910 - DNA ligase (ATP) activity [Evidence IEA,IEA]; GO_function: GO:0003910 - DNA ligase (ATP) activity [Evidence IDA] [PMID 1445910]; GO_function: GO:0003910 - DNA ligase (ATP) activity [Evidence IDA] [PMID 6347688]; GO_function: GO:0003909 - DNA ligase activity [Evidence IEA]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006266 - DNA ligation [Evidence IDA,IMP] [PMID 9759502]; GO_process: GO:0051103 - DNA ligation involved in DNA repair [Evidence IEA]; GO_process: GO:0006310 - DNA recombination [Evidence IEA,IEA]; GO_process: GO:0006310 - DNA recombination [Evidence IMP] [PMID 9230305]; GO_process: GO:0006281 - DNA repair [Evidence IEA,IEA]; GO_process: GO:0006260 - DNA replication [Evidence IEA,IEA]; GO_process: GO:0006284 - base-excision repair [Evidence IMP] [PMID 10052932]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0006273 - lagging strand elongation [Evidence IDA,IMP] [PMID 9759502]; GO_process: GO:0035753 - maintenance of DNA trinucleotide repeats [Evidence IMP] [PMID 16079237]; GO_process: GO:0000278 - mitotic cell cycle [Evidence IMP] [PMID 6749599]; GO_process: GO:0006289 - nucleotide-excision repair [Evidence IMP] [PMID 10052932]; DNA ligase (ATP) CDC9 2320662 CDC9 30034676 CDC9 Sugiyamaella lignohabitans DNA ligase (ATP) CDC9 XP_018737589.1 2319154 R 796027 CDS AWJ20_2733 30034677 2326367..2327899 B 1 NC_031674.1 putative serine/threonine protein kinase VHS1 2327899 VHS1 30034677 VHS1 Sugiyamaella lignohabitans putative serine/threonine protein kinase VHS1 XP_018737590.1 2326367 D 796027 CDS AWJ20_2734 30034678 complement(2330615..2332042) B 1 NC_031674.1 Protein phosphatase required for mitotic exit; required for rDNA segregation; located in nucleolus until liberated by the FEAR and Mitotic Exit Network in anaphase, enabling it to effect a decrease in CDK/B-cyclin activity and mitotic exit; required for meiosis I spindle disassembly; released from nucleolus upon entry into anaphase I of meiosis, resequestered in metaphase II, then released again upon entry into anaphase II; maintained in nucleolus by Cdc55p in early meiosis; GO_component: GO:0030869 - RENT complex [Evidence IDA] [PMID 10219244]; GO_component: GO:0005935 - cellular bud neck [Evidence IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 12062061]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11914276]; GO_component: GO:0005816 - spindle pole body [Evidence IDA] [PMID 12062061]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016791 - phosphatase activity [Evidence IEA]; GO_function: GO:0004721 - phosphoprotein phosphatase activity [Evidence IEA]; GO_function: GO:0004721 - phosphoprotein phosphatase activity [Evidence IDA] [PMID 24319056]; GO_function: GO:0004721 - phosphoprotein phosphatase activity [Evidence IDA] [PMID 9295359]; GO_function: GO:0004725 - protein tyrosine phosphatase activity [Evidence IEA,IEA]; GO_function: GO:0008138 - protein tyrosine/serine/threonine phosphatase activity [Evidence IEA]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0051304 - chromosome separation [Evidence IMP] [PMID 16769819]; GO_process: GO:0016311 - dephosphorylation [Evidence IEA]; GO_process: GO:0007126 - meiotic nuclear division [Evidence IEA]; GO_process: GO:0051229 - meiotic spindle disassembly [Evidence IMP] [PMID 12737806]; GO_process: GO:0000278 - mitotic cell cycle [Evidence IMP] [PMID 6749599]; GO_process: GO:0007067 - mitotic nuclear division [Evidence IEA]; GO_process: GO:0035335 - peptidyl-tyrosine dephosphorylation [Evidence IEA,IEA]; GO_process: GO:0006470 - protein dephosphorylation [Evidence IEA]; GO_process: GO:0006470 - protein dephosphorylation [Evidence IMP] [PMID 20923974]; GO_process: GO:0006470 - protein dephosphorylation [Evidence IDA] [PMID 9295359]; GO_process: GO:0007096 - regulation of exit from mitosis [Evidence IGI,IPI] [PMID 10219244]; phosphoprotein phosphatase CDC14 2332042 CDC14 30034678 CDC14 Sugiyamaella lignohabitans phosphoprotein phosphatase CDC14 XP_018737591.1 2330615 R 796027 CDS AWJ20_2735 30034679 2334990..2336894 B 1 NC_031674.1 Very long chain fatty acyl-CoA synthetase and fatty acid transporter; activates imported fatty acids with a preference for very long lengths (C20-C26); has a separate function in the transport of long chain fatty acids; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 9988704]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0031235 - intrinsic component of the cytoplasmic side of the plasma membrane [Evidence IDA] [PMID 17679730]; GO_component: GO:0005811 - lipid particle [Evidence IDA] [PMID 10515935]; GO_component: GO:0005811 - lipid particle [Evidence IDA] [PMID 24868093]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005777 - peroxisome [Evidence IMP] [PMID 9660783]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0005324 - long-chain fatty acid transporter activity [Evidence IMP] [PMID 9079682]; GO_function: GO:0031957 - very long-chain fatty acid-CoA ligase activity [Evidence IMP] [PMID 9660783]; GO_process: GO:0006869 - lipid transport [Evidence IEA]; GO_process: GO:0015909 - long-chain fatty acid transport [Evidence IMP] [PMID 10880966]; GO_process: GO:0015909 - long-chain fatty acid transport [Evidence IGI,IMP] [PMID 12601005]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0000038 - very long-chain fatty acid metabolic process [Evidence IMP] [PMID 9660783]; GO_process: GO:0000038 - very long-chain fatty acid metabolic process [Evidence IMP] [PMID 9988704]; long-chain fatty acid transporter FAT1 2336894 FAT1 30034679 FAT1 Sugiyamaella lignohabitans long-chain fatty acid transporter FAT1 XP_018737592.1 2334990 D 796027 CDS AWJ20_2736 30034680 complement(2337096..2338190) B 1 NC_031674.1 Beta-isopropylmalate dehydrogenase (IMDH); catalyzes the third step in the leucine biosynthesis pathway; can additionally catalyze the conversion of beta-ethylmalate into alpha-ketovalerate; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 4355481]; GO_function: GO:0003862 - 3-isopropylmalate dehydrogenase activity [Evidence IEA,IEA]; GO_function: GO:0003862 - 3-isopropylmalate dehydrogenase activity [Evidence IDA] [PMID 3071718]; GO_function: GO:0003862 - 3-isopropylmalate dehydrogenase activity [Evidence IMP] [PMID 6297759]; GO_function: GO:0051287 - NAD binding [Evidence IEA]; GO_function: GO:0000287 - magnesium ion binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor [Evidence IEA]; GO_process: GO:0009082 - branched-chain amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0006097 - glyoxylate cycle [Evidence IMP] [PMID 23642236]; GO_process: GO:0009098 - leucine biosynthetic process [Evidence IEA,IEA,IEA]; GO_process: GO:0009098 - leucine biosynthetic process [Evidence IMP] [PMID 6297759]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; 3-isopropylmalate dehydrogenase 2338190 LEU2 30034680 LEU2 Sugiyamaella lignohabitans 3-isopropylmalate dehydrogenase XP_018737593.1 2337096 R 796027 CDS AWJ20_2737 30034681 2339511..2340299 B 1 NC_031674.1 Uncharacterized protein C16G5.07c 2340299 STM2 30034681 STM2 Sugiyamaella lignohabitans Uncharacterized protein C16G5.07c XP_018737594.1 2339511 D 796027 CDS AWJ20_2738 30034682 2340582..2341199 B 1 NC_031674.1 uncharacterized protein 2341199 30034682 AWJ20_2738 Sugiyamaella lignohabitans uncharacterized protein XP_018737595.1 2340582 D 796027 CDS AWJ20_2740 30034685 complement(2342530..2344101) B 1 NC_031674.1 N-formyltyrosine oxidase; sporulation-specific microsomal enzyme involved in the production of N,N-bisformyl dityrosine required for spore wall maturation, homologous to cytochrome P-450s; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0020037 - heme binding [Evidence IEA]; GO_function: GO:0005506 - iron ion binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004497 - monooxygenase activity [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence ISS] [PMID 8183942]; GO_function: GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [Evidence IEA]; GO_process: GO:0030476 - ascospore wall assembly [Evidence IDA,IMP] [PMID 8183942]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0030435 - sporulation resulting in formation of a cellular spore [Evidence IEA]; Dit2p 2344101 DIT2 30034685 DIT2 Sugiyamaella lignohabitans Dit2p XP_018737596.1 2342530 R 796027 CDS AWJ20_2741 30034686 2347745..2351572 B 1 NC_031674.1 Essential RNA-binding G protein effector of mating response pathway; mainly associated with nuclear envelope and ER, interacts in mRNA-dependent manner with translating ribosomes via multiple KH domains, similar to vertebrate vigilins; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 23222640]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 23222640]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IDA] [PMID 11278502]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0031965 - nuclear membrane [Evidence IEA]; GO_component: GO:0042175 - nuclear outer membrane-endoplasmic reticulum membrane network [Evidence IDA] [PMID 8533468]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0005844 - polysome [Evidence IDA] [PMID 11278502]; GO_function: GO:0001965 - G-protein alpha-subunit binding [Evidence IPI] [PMID 14536090]; GO_function: GO:0003723 - RNA binding [Evidence IEA,IEA]; GO_function: GO:0003723 - RNA binding [Evidence IDA] [PMID 11278502]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_process: GO:0030466 - chromatin silencing at silent mating-type cassette [Evidence IMP] [PMID 16632467]; GO_process: GO:0006348 - chromatin silencing at telomere [Evidence IGI,IMP] [PMID 16632467]; GO_process: GO:0007059 - chromosome segregation [Evidence IMP] [PMID 8533468]; GO_process: GO:0008298 - intracellular mRNA localization [Evidence IPI] [PMID 11278502]; GO_process: GO:0045141 - meiotic telomere clustering [Evidence IMP] [PMID 16632467]; GO_process: GO:0000750 - pheromone-dependent signal transduction involved in conjugation with cellular fusion [Evidence IGI] [PMID 14536090]; Scp160p 2351572 SCP160 30034686 SCP160 Sugiyamaella lignohabitans Scp160p XP_018737597.1 2347745 D 796027 CDS AWJ20_2742 30034687 complement(2351914..2353398) B 1 NC_031674.1 Putative purine-cytosine permease; very similar to Fcy2p but cannot substitute for its function; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence ISA] [PMID 16845689]; GO_function: GO:0015205 - nucleobase transmembrane transporter activity [Evidence IEA]; GO_function: GO:0015205 - nucleobase transmembrane transporter activity [Evidence IMP] [PMID 16845689]; GO_function: GO:0005215 - transporter activity [Evidence IEA]; GO_process: GO:0015856 - cytosine transport [Evidence IMP] [PMID 16845689]; GO_process: GO:0015851 - nucleobase transport [Evidence IEA]; GO_process: GO:0072530 - purine-containing compound transmembrane transport [Evidence ISA] [PMID 16845689]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; Fcy22p 2353398 FCY22 30034687 FCY22 Sugiyamaella lignohabitans Fcy22p XP_018737598.1 2351914 R 796027 CDS AWJ20_2743 30034688 2354065..2356092 B 1 NC_031674.1 Homoaconitase; catalyzes the conversion of homocitrate to homoisocitrate, which is a step in the lysine biosynthesis pathway; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO_function: GO:0004409 - homoaconitate hydratase activity [Evidence IEA,IEA]; GO_function: GO:0004409 - homoaconitate hydratase activity [Evidence ISA] [PMID 9268014]; GO_function: GO:0051536 - iron-sulfur cluster binding [Evidence IEA]; GO_function: GO:0016829 - lyase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0009085 - lysine biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0019878 - lysine biosynthetic process via aminoadipic acid [Evidence IEA]; GO_process: GO:0019878 - lysine biosynthetic process via aminoadipic acid [Evidence IMP] [PMID 2507177]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; homoaconitate hydratase LYS4 2356092 LYS4 30034688 LYS4 Sugiyamaella lignohabitans homoaconitate hydratase LYS4 XP_018737599.1 2354065 D 796027 CDS AWJ20_2744 30034689 2356645..2358462 B 1 NC_031674.1 Putative transcription factor; has homolog in Kluyveromyces lactis; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0000981 - sequence-specific DNA binding RNA polymerase II transcription factor activity [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence IEA]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA,IEA]; GO_process: GO:0030435 - sporulation resulting in formation of a cellular spore [Evidence IEA]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA,IEA]; Sef1p 2358462 SEF1 30034689 SEF1 Sugiyamaella lignohabitans Sef1p XP_018737600.1 2356645 D 796027 CDS AWJ20_2745 30034690 2358866..2359795 B 1 NC_031674.1 Protein required for the transport of Gap1p; required for the transport of amino acid permease Gap1p from the Golgi to the cell surface; component of the TOR signaling pathway; associates with both Tor1p and Tor2p; contains a WD-repeat; GO_component: GO:0000139 - Golgi membrane [Evidence IDA] [PMID 12719473]; GO_component: GO:0031931 - TORC1 complex [Evidence IPI] [PMID 12408816]; GO_component: GO:0031932 - TORC2 complex [Evidence IPI] [PMID 12408816]; GO_component: GO:0010008 - endosome membrane [Evidence IDA] [PMID 12719473]; GO_component: GO:0031234 - extrinsic component of cytoplasmic side of plasma membrane [Evidence IDA] [PMID 12631735]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0005515 - protein binding [Evidence IPI] [PMID 12631735]; GO_function: GO:0030295 - protein kinase activator activity [Evidence IMP] [PMID 16002396]; GO_process: GO:0031929 - TOR signaling [Evidence IC] [PMID 12408816]; GO_process: GO:0031929 - TOR signaling [Evidence IMP] [PMID 12719473]; GO_process: GO:0030950 - establishment or maintenance of actin cytoskeleton polarity [Evidence IMP] [PMID 12408816]; GO_process: GO:0031505 - fungal-type cell wall organization [Evidence IMP] [PMID 12719473]; GO_process: GO:0031930 - mitochondria-nucleus signaling pathway [Evidence IMP] [PMID 11742997]; GO_process: GO:0001558 - regulation of cell growth [Evidence IPI] [PMID 12408816]; GO_process: GO:0007165 - signal transduction [Evidence IMP] [PMID 12719473]; GO_process: GO:0006810 - transport [Evidence IMP] [PMID 9409822]; TOR complex subunit LST8 2359795 LST8 30034690 LST8 Sugiyamaella lignohabitans TOR complex subunit LST8 XP_018737601.1 2358866 D 796027 CDS AWJ20_2746 30034691 join(2360185..2360193,2360267..2363758) B 1 NC_031674.1 Protein involved in the nonsense-mediated mRNA decay (NMD) pathway; interacts with Nam7p and Upf3p; involved in telomere maintenance; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 16043493]; GO_component: GO:0005844 - polysome [Evidence IDA] [PMID 9268361]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006310 - DNA recombination [Evidence IMP] [PMID 23390378]; GO_process: GO:0070478 - nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay [Evidence IGI] [PMID 12881429]; GO_process: GO:0006452 - translational frameshifting [Evidence IMP] [PMID 15388879]; Nmd2p 2363758 NMD2 30034691 NMD2 Sugiyamaella lignohabitans Nmd2p XP_018737602.1 2360185 D 796027 CDS AWJ20_2747 30034692 complement(2363876..2365222) B 1 NC_031674.1 Type 2C serine/threonine protein phosphatase (PP2C); alternatively spliced to create two mRNA isoforms; protein from spliced form localizes to the mitochondria while the one from the unspliced form is localized to the nuclear envelope; activates coenzyme Q6 biosynthesis by dephosphorylation of demethoxy-Q6 hydroxylase Coq7p; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 11327310]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 18180296]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 19564484]; GO_component: GO:0005635 - nuclear envelope [Evidence IDA] [PMID 19564484]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004721 - phosphoprotein phosphatase activity [Evidence IEA,IEA]; GO_function: GO:0004721 - phosphoprotein phosphatase activity [Evidence IDA] [PMID 23940037]; GO_function: GO:0004722 - protein serine/threonine phosphatase activity [Evidence IDA] [PMID 12220683]; GO_function: GO:0004722 - protein serine/threonine phosphatase activity [Evidence IDA] [PMID 23940037]; GO_process: GO:0006470 - protein dephosphorylation [Evidence IDA] [PMID 23940037]; type 2C protein phosphatase PTC7 2365222 PTC7 30034692 PTC7 Sugiyamaella lignohabitans type 2C protein phosphatase PTC7 XP_018737603.1 2363876 R 796027 CDS AWJ20_2748 30034693 2366475..2367641 B 1 NC_031674.1 D-amino acid oxidase (predicted) 2367641 30034693 AWJ20_2748 Sugiyamaella lignohabitans D-amino acid oxidase (predicted) XP_018737604.1 2366475 D 796027 CDS AWJ20_2749 30034694 2368984..2369415 B 1 NC_031674.1 uncharacterized protein 2369415 30034694 AWJ20_2749 Sugiyamaella lignohabitans uncharacterized protein XP_018737605.1 2368984 D 796027 CDS AWJ20_2750 30034696 2369976..2371688 B 1 NC_031674.1 Oligopeptide transporter; member of the OPT family, with potential orthologs in S. pombe and C. albicans; also plays a role in formation of mature vacuoles; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0005887 - integral component of plasma membrane [Evidence IC] [PMID 9643541]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_function: GO:0015198 - oligopeptide transporter activity [Evidence IDA,ISS] [PMID 9643541]; GO_process: GO:0006857 - oligopeptide transport [Evidence IDA,ISS] [PMID 9643541]; GO_process: GO:0015833 - peptide transport [Evidence IEA]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0042144 - vacuole fusion, non-autophagic [Evidence IMP] [PMID 19767828]; Opt2p 2371688 OPT2 30034696 OPT2 Sugiyamaella lignohabitans Opt2p XP_018737606.1 2369976 D 796027 CDS AWJ20_2751 30034697 complement(2371768..2373867) B 1 NC_031674.1 Substrate-recruiting cofactor of the Cdc48p-Npl4p-Ufd1p segregase; polyubiquitin binding protein that assists in the dislocation of misfolded, ERAD substrates that are subsequently delivered to the proteasome for degradation; involved in regulated destruction of ER membrane proteins such as HMG-CoA reductase (Hmg1/2p) and cytoplasmic proteins (Fbp1p); involved in mobilizing membrane bound transaction factors by regulated Ub/proteasome-dependent processing (RUP); GO_component: GO:0034098 - Cdc48p-Npl4p-Ufd1p AAA ATPase complex [Evidence IDA] [PMID 11598205]; GO_component: GO:0034098 - Cdc48p-Npl4p-Ufd1p AAA ATPase complex [Evidence IDA] [PMID 11733065]; GO_component: GO:0000837 - Doa10p ubiquitin ligase complex [Evidence IDA] [PMID 16873065]; GO_component: GO:0000837 - Doa10p ubiquitin ligase complex [Evidence IDA] [PMID 16873066]; GO_component: GO:0000839 - Hrd1p ubiquitin ligase ERAD-L complex [Evidence IDA] [PMID 16873065]; GO_component: GO:0000839 - Hrd1p ubiquitin ligase ERAD-L complex [Evidence IDA] [PMID 16873066]; GO_component: GO:1990112 - RQC complex [Evidence IDA] [PMID 23178123]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11733065]; GO_function: GO:0031593 - polyubiquitin binding [Evidence IDA] [PMID 16004872]; GO_function: GO:0043130 - ubiquitin binding [Evidence IDA] [PMID 16004872]; GO_process: GO:0071712 - ER-associated misfolded protein catabolic process [Evidence IMP] [PMID 11740563]; GO_process: GO:0071712 - ER-associated misfolded protein catabolic process [Evidence IMP] [PMID 11813000]; GO_process: GO:0030433 - ER-associated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 11739805]; GO_process: GO:0071629 - cytoplasm-associated proteasomal ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 18812321]; GO_process: GO:0070651 - nonfunctional rRNA decay [Evidence IMP] [PMID 22505030]; GO_process: GO:1900182 - positive regulation of protein localization to nucleus [Evidence IMP] [PMID 11598205]; GO_process: GO:1900182 - positive regulation of protein localization to nucleus [Evidence IMP] [PMID 11733065]; GO_process: GO:0043161 - proteasome-mediated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 20206597]; GO_process: GO:0030970 - retrograde protein transport, ER to cytosol [Evidence IMP] [PMID 11740563]; GO_process: GO:0030970 - retrograde protein transport, ER to cytosol [Evidence IMP] [PMID 11813000]; GO_process: GO:1990116 - ribosome-associated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 23358411]; GO_process: GO:0006511 - ubiquitin-dependent protein catabolic process [Evidence IEA]; polyubiquitin-binding protein UFD1 2373867 UFD1 30034697 UFD1 Sugiyamaella lignohabitans polyubiquitin-binding protein UFD1 XP_018737607.1 2371768 R 796027 CDS AWJ20_2752 30034698 complement(2374172..2376319) B 1 NC_031674.1 galactose-responsive transcription factor GAL4 2376319 GAL4 30034698 GAL4 Sugiyamaella lignohabitans galactose-responsive transcription factor GAL4 XP_018737608.1 2374172 R 796027 CDS AWJ20_2753 30034699 complement(2376640..2377320) B 1 NC_031674.1 uncharacterized protein 2377320 30034699 AWJ20_2753 Sugiyamaella lignohabitans uncharacterized protein XP_018737609.1 2376640 R 796027 CDS AWJ20_2755 30034701 complement(2378117..2379250) B 1 NC_031674.1 uncharacterized protein 2379250 30034701 AWJ20_2755 Sugiyamaella lignohabitans uncharacterized protein XP_018737610.1 2378117 R 796027 CDS AWJ20_2756 30034702 2380716..2382374 B 1 NC_031674.1 Alpha-1,2-mannosyltransferase; responsible for addition of the first alpha-1,2-linked mannose to form the branches on the mannan backbone of oligosaccharides, localizes to an early Golgi compartment; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0005794 - Golgi apparatus [Evidence IDA] [PMID 9756928]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0000026 - alpha-1,2-mannosyltransferase activity [Evidence IMP] [PMID 9756928]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006486 - protein glycosylation [Evidence IEA,IEA]; GO_process: GO:0006486 - protein glycosylation [Evidence IMP] [PMID 9756928]; Mnn2p 2382374 MNN2 30034702 MNN2 Sugiyamaella lignohabitans Mnn2p XP_018737611.1 2380716 D 796027 CDS AWJ20_2757 30034703 2383307..2383831 B 1 NC_031674.1 uncharacterized protein 2383831 30034703 AWJ20_2757 Sugiyamaella lignohabitans uncharacterized protein XP_018737612.1 2383307 D 796027 CDS AWJ20_2758 30034704 complement(2383891..2384982) B 1 NC_031674.1 Sorbitol dehydrogenase; expression is induced in the presence of sorbitol or xylose; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0003939 - L-iditol 2-dehydrogenase activity [Evidence IEA]; GO_function: GO:0003939 - L-iditol 2-dehydrogenase activity [Evidence IDA,ISS] [PMID 8125328]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0019318 - hexose metabolic process [Evidence IEP] [PMID 8125328]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; L-iditol 2-dehydrogenase SOR1 2384982 SOR1 30034704 SOR1 Sugiyamaella lignohabitans L-iditol 2-dehydrogenase SOR1 XP_018737613.1 2383891 R 796027 CDS AWJ20_2759 30034705 complement(2386297..2386914) B 1 NC_031674.1 uncharacterized protein 2386914 30034705 AWJ20_2759 Sugiyamaella lignohabitans uncharacterized protein XP_018737614.1 2386297 R 796027 CDS AWJ20_2760 30034707 complement(join(2388536..2389820,2389884..2389951)) B 1 NC_031674.1 homogentisate 1,2-dioxygenase 2389951 30034707 AWJ20_2760 Sugiyamaella lignohabitans homogentisate 1,2-dioxygenase XP_018737615.1 2388536 R 796027 CDS AWJ20_2761 30034708 complement(2390675..2392258) B 1 NC_031674.1 uncharacterized protein 2392258 30034708 AWJ20_2761 Sugiyamaella lignohabitans uncharacterized protein XP_018737616.1 2390675 R 796027 CDS AWJ20_2762 30034709 complement(2392758..2393516) B 1 NC_031674.1 3-hydroxyacyl-CoA dehydrogenase and enoyl-CoA hydratase; multifunctional enzyme of the peroxisomal fatty acid beta-oxidation pathway; GO_component: GO:0005777 - peroxisome [Evidence IEA,IEA]; GO_component: GO:0005777 - peroxisome [Evidence ISM] [PMID 1551874]; GO_function: GO:0003857 - 3-hydroxyacyl-CoA dehydrogenase activity [Evidence IDA] [PMID 1551874]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0004300 - enoyl-CoA hydratase activity [Evidence IDA] [PMID 1551874]; GO_function: GO:0016853 - isomerase activity [Evidence IEA]; GO_function: GO:0016829 - lyase activity [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor [Evidence IEA]; GO_process: GO:0006635 - fatty acid beta-oxidation [Evidence IEA]; GO_process: GO:0006635 - fatty acid beta-oxidation [Evidence IMP] [PMID 10497229]; GO_process: GO:0006635 - fatty acid beta-oxidation [Evidence IMP] [PMID 1551874]; GO_process: GO:0006631 - fatty acid metabolic process [Evidence IEA]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA,IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; bifunctional hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase FOX2 2393516 FOX2 30034709 FOX2 Sugiyamaella lignohabitans bifunctional hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase FOX2 XP_018737617.1 2392758 R 796027 CDS AWJ20_2763 30034710 2394657..2396282 B 1 NC_031674.1 Putative transporter in the major facilitator superfamily; member of the 12-spanner drug:H(+) antiporter DHA1 family; mutations in membrane-spanning domains permit cation and histidinol uptake; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005886 - plasma membrane [Evidence ISS] [PMID 8955402]; GO_function: GO:0015665 - alcohol transmembrane transporter activity [Evidence IMP] [PMID 2405251]; GO_function: GO:0022890 - inorganic cation transmembrane transporter activity [Evidence IMP] [PMID 8955402]; GO_process: GO:0006812 - cation transport [Evidence IMP] [PMID 8955402]; GO_process: GO:0015850 - organic hydroxy compound transport [Evidence IMP] [PMID 2405251]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Hol1p 2396282 HOL1 30034710 HOL1 Sugiyamaella lignohabitans Hol1p XP_018737618.1 2394657 D 796027 CDS AWJ20_2764 30034711 2396662..2397963 B 1 NC_031674.1 Fungal Genetics Stock Center 12727; fumarylacetoacetase 2397963 30034711 AWJ20_2764 Sugiyamaella lignohabitans fumarylacetoacetase XP_018737619.1 2396662 D 796027 CDS AWJ20_2765 30034712 2401314..2402453 B 1 NC_031674.1 protein kinase RIO1 2402453 RIO1 30034712 RIO1 Sugiyamaella lignohabitans protein kinase RIO1 XP_018737620.1 2401314 D 796027 CDS AWJ20_2766 30034713 complement(2402502..2403968) B 1 NC_031674.1 hypothetical protein; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm; null mutation suppresses cdc13-1 temperature sensitivity; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; Rtc5p 2403968 RTC5 30034713 RTC5 Sugiyamaella lignohabitans Rtc5p XP_018737621.1 2402502 R 796027 CDS AWJ20_2767 30034714 2407427..2409313 B 1 NC_031674.1 Component of a Cdc48p-complex involved in protein quality control; exhibits cytosolic and ER-membrane localization, with Cdc48p, during normal growth, and contributes to ER-associated degradation (ERAD) of specific substrates at a step after their ubiquitination; forms a mitochondrially-associated complex with Cdc48p and Npl4p under oxidative stress that is required for ubiquitin-mediated mitochondria-associated protein degradation (MAD); conserved in C. elegans and humans; GO_component: GO:0036266 - Cdc48p-Npl4p-Vms1p AAA ATPase complex [Evidence IDA] [PMID 21070972]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 21070972]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IDA] [PMID 21148305]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 21070972]; GO_function: GO:0046872 - metal ion binding [Evidence IEA,IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0030433 - ER-associated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 21148305]; GO_process: GO:0072671 - mitochondria-associated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 21070972]; GO_process: GO:0071630 - nucleus-associated proteasomal ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 22718752]; Vms1p 2409313 VMS1 30034714 VMS1 Sugiyamaella lignohabitans Vms1p XP_018737622.1 2407427 D 796027 CDS AWJ20_2768 30034715 complement(2409411..2412110) B 1 NC_031674.1 DNA-dependent ATPase; DNA recombination/repair translocase, supercoils DNA and promotes DNA strand opening; stimulates strand exchange by modifying dsDNA topology; involved in recombinational repair of DNA double-strand breaks (DSBs) during mitosis and meiosis; phosphorylated in Mec1p-, Rad53p-dependent way in response to one DSB; contributes to remodelling of nucleosomes; proposed to be involved in crossover interference; interacts with Dmc1p; stimulates Dmc1p and Rad51p; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IC] [PMID 16831867]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0003916 - DNA topoisomerase activity [Evidence IEA]; GO_function: GO:0015616 - DNA translocase activity [Evidence IDA] [PMID 10970884]; GO_function: GO:0008094 - DNA-dependent ATPase activity [Evidence IDA] [PMID 10970884]; GO_function: GO:0008094 - DNA-dependent ATPase activity [Evidence IMP] [PMID 16831867]; GO_function: GO:0003690 - double-stranded DNA binding [Evidence IDA,IMP] [PMID 16831867]; GO_function: GO:0004386 - helicase activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016853 - isomerase activity [Evidence IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0032508 - DNA duplex unwinding [Evidence IDA,IMP] [PMID 16831867]; GO_process: GO:0032392 - DNA geometric change [Evidence IDA] [PMID 10970884]; GO_process: GO:0032392 - DNA geometric change [Evidence IDA,IMP] [PMID 16831867]; GO_process: GO:0006310 - DNA recombination [Evidence IEA]; GO_process: GO:0006310 - DNA recombination [Evidence IMP] [PMID 16831867]; GO_process: GO:0006281 - DNA repair [Evidence IEA]; GO_process: GO:0006281 - DNA repair [Evidence IMP] [PMID 16831867]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0030491 - heteroduplex formation [Evidence IDA] [PMID 10970884]; GO_process: GO:0007126 - meiotic nuclear division [Evidence IEA]; GO_process: GO:0045144 - meiotic sister chromatid segregation [Evidence IMP] [PMID 16230461]; GO_process: GO:0007131 - reciprocal meiotic recombination [Evidence IGI,IMP] [PMID 9409819]; GO_process: GO:0007131 - reciprocal meiotic recombination [Evidence IGI,IMP] [PMID 9409820]; DNA-dependent ATPase RDH54 2412110 RDH54 30034715 RDH54 Sugiyamaella lignohabitans DNA-dependent ATPase RDH54 XP_018737623.1 2409411 R 796027 CDS AWJ20_2769 30034716 complement(2412387..2413268) B 1 NC_031674.1 Protein involved in 7-aminocholesterol resistance; has seven potential membrane-spanning regions; expression is induced under both low-heme and low-oxygen conditions; member of the fungal lipid-translocating exporter (LTE) family of protein; RTA1 has a paralog, YLR046C, that arose from the whole genome duplication; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12524434]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 8660468]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 22129104]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0006950 - response to stress [Evidence IEA]; Rta1p 2413268 RTA1 30034716 RTA1 Sugiyamaella lignohabitans Rta1p XP_018737624.1 2412387 R 796027 CDS AWJ20_2770 30034718 2413620..2414819 B 1 NC_031674.1 Sterol regulatory element binding protein; regulates transcription of sterol biosynthetic genes; contains Zn[2]-Cys[6] binuclear cluster; relocates from intracellular membranes to perinuclear foci on sterol depletion; ECM22 has a paralog, UPC2, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0016020 - membrane [Evidence IDA] [PMID 18675371]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IC] [PMID 11533229]; GO_component: GO:0048471 - perinuclear region of cytoplasm [Evidence IDA] [PMID 18675371]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0000978 - RNA polymerase II core promoter proximal region sequence-specific DNA binding [Evidence IDA] [PMID 11533229]; GO_function: GO:0001077 - RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription [Evidence IDA] [PMID 11533229]; GO_function: GO:0001077 - RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription [Evidence IMP] [PMID 16055745]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19111667]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19158363]; GO_function: GO:0000981 - sequence-specific DNA binding RNA polymerase II transcription factor activity [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0035961 - positive regulation of ergosterol biosynthetic process by positive regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 11533229]; GO_process: GO:0035961 - positive regulation of ergosterol biosynthetic process by positive regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 16055745]; GO_process: GO:0035969 - positive regulation of sterol import by positive regulation of transcription from RNA polymerase II promoter [Evidence IGI] [PMID 11208779]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA,IEA]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Ecm22p 2414819 ECM22 30034718 ECM22 Sugiyamaella lignohabitans Ecm22p XP_018737625.1 2413620 D 796027 CDS AWJ20_2771 30034719 complement(2415002..2417857) B 1 NC_031674.1 Daughter cell-specific secreted protein with similarity to glucanases; degrades cell wall from the daughter side causing daughter to separate from mother; GO_component: GO:0030428 - cell septum [Evidence IDA] [PMID 12455695]; GO_component: GO:0005618 - cell wall [Evidence IEA,IEA]; GO_component: GO:0005576 - extracellular region [Evidence IEA]; GO_component: GO:0005576 - extracellular region [Evidence ISS] [PMID 11747810]; GO_component: GO:0009277 - fungal-type cell wall [Evidence IDA] [PMID 11935221]; GO_function: GO:0042973 - glucan endo-1,3-beta-D-glucosidase activity [Evidence IGI] [PMID 12455695]; GO_function: GO:0052861 - glucan endo-1,3-beta-glucanase activity, C-3 substituted reducing group [Evidence IEA,IEA]; GO_function: GO:0052862 - glucan endo-1,4-beta-glucanase activity, C-3 substituted reducing group [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016798 - hydrolase activity, acting on glycosyl bonds [Evidence IEA]; GO_process: GO:0016998 - cell wall macromolecule catabolic process [Evidence IEA]; GO_process: GO:0007109 - cytokinesis, completion of separation [Evidence IEP,ISS] [PMID 11747810]; GO_process: GO:0007109 - cytokinesis, completion of separation [Evidence IMP] [PMID 16328626]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; Dse4p 2417857 DSE4 30034719 DSE4 Sugiyamaella lignohabitans Dse4p XP_018737626.1 2415002 R 796027 CDS AWJ20_2772 30034720 complement(2418866..2421550) B 1 NC_031674.1 Telobox-containing general regulatory factor; binds TTAGGG repeats within subtelomeric anti-silencing regions (STARs), blocking silent chromatin propagation; binds majority of snoRNA gene promoters, required for full snoRNA expression; caps DSB flanked by long T2AG3 repeats and blocks checkpoint activation; GO_component: GO:0005694 - chromosome [Evidence IEA]; GO_component: GO:0000781 - chromosome, telomeric region [Evidence IEA,IEA]; GO_component: GO:0000784 - nuclear chromosome, telomeric region [Evidence IDA] [PMID 20513435]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11914276]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0000978 - RNA polymerase II core promoter proximal region sequence-specific DNA binding [Evidence IDA] [PMID 20513435]; GO_function: GO:0000982 - RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity [Evidence IDA] [PMID 20513435]; GO_function: GO:0003682 - chromatin binding [Evidence IEA]; GO_function: GO:0043035 - chromatin insulator sequence binding [Evidence IDA] [PMID 11258704]; GO_function: GO:0042803 - protein homodimerization activity [Evidence IEA]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19111667]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19158363]; GO_function: GO:0042162 - telomeric DNA binding [Evidence IEA]; GO_function: GO:0042162 - telomeric DNA binding [Evidence IDA] [PMID 20513435]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0031936 - negative regulation of chromatin silencing [Evidence IDA] [PMID 11258704]; GO_process: GO:0032211 - negative regulation of telomere maintenance via telomerase [Evidence IGI] [PMID 16467854]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0001015 - snoRNA transcription from an RNA polymerase II promoter [Evidence IDA,IMP] [PMID 20513435]; GO_process: GO:0010833 - telomere maintenance via telomere lengthening [Evidence IDA] [PMID 17917674]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Tbf1p 2421550 TBF1 30034720 TBF1 Sugiyamaella lignohabitans Tbf1p XP_018737627.1 2418866 R 796027 CDS AWJ20_2773 30034721 2422447..2423646 B 1 NC_031674.1 Biotin synthase; catalyzes the conversion of dethiobiotin to biotin, which is the last step of the biotin biosynthesis pathway; complements E. coli bioB mutant; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_function: GO:0051537 - 2 iron, 2 sulfur cluster binding [Evidence IEA]; GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO_function: GO:0004076 - biotin synthase activity [Evidence IEA,IEA]; GO_function: GO:0004076 - biotin synthase activity [Evidence IMP] [PMID 10525840]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0051536 - iron-sulfur cluster binding [Evidence IEA,IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0009102 - biotin biosynthetic process [Evidence IEA,IEA,IEA]; GO_process: GO:0009102 - biotin biosynthetic process [Evidence IMP] [PMID 10525840]; biotin synthase 2423646 BIO2 30034721 BIO2 Sugiyamaella lignohabitans biotin synthase XP_018737628.1 2422447 D 796027 CDS AWJ20_2774 30034722 complement(2423733..2425586) B 1 NC_031674.1 uncharacterized protein 2425586 30034722 AWJ20_2774 Sugiyamaella lignohabitans uncharacterized protein XP_018737629.1 2423733 R 796027 CDS AWJ20_2775 30034723 complement(2427309..2428481) B 1 NC_031674.1 Aspartic protease; member of the yapsin family of proteases involved in cell wall growth and maintenance; attached to the plasma membrane via a glycosylphosphatidylinositol (GPI) anchor; GO_component: GO:0031225 - anchored component of membrane [Evidence IEA]; GO_component: GO:0046658 - anchored component of plasma membrane [Evidence IDA,IPI] [PMID 11016834]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_function: GO:0004190 - aspartic-type endopeptidase activity [Evidence IEA,IEA]; GO_function: GO:0004190 - aspartic-type endopeptidase activity [Evidence IDA,ISS] [PMID 10191273]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_process: GO:0031505 - fungal-type cell wall organization [Evidence IGI] [PMID 16087741]; GO_process: GO:0006508 - proteolysis [Evidence IEA,IEA]; Yps3p 2428481 YPS3 30034723 YPS3 Sugiyamaella lignohabitans Yps3p XP_018737630.1 2427309 R 796027 CDS AWJ20_2776 30034724 complement(2429551..2430717) B 1 NC_031674.1 Aspartic protease; member of the yapsin family of proteases involved in cell wall growth and maintenance; attached to the plasma membrane via a glycosylphosphatidylinositol (GPI) anchor; YPS1 has a paralog, MKC7, that arose from the whole genome duplication; GO_component: GO:0031225 - anchored component of membrane [Evidence IEA]; GO_component: GO:0009277 - fungal-type cell wall [Evidence IDA] [PMID 10383953]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_function: GO:0004190 - aspartic-type endopeptidase activity [Evidence IEA,IEA]; GO_function: GO:0004190 - aspartic-type endopeptidase activity [Evidence IDA] [PMID 8389368]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_process: GO:0031505 - fungal-type cell wall organization [Evidence IGI] [PMID 16087741]; GO_process: GO:0016485 - protein processing [Evidence IDA] [PMID 8626758]; GO_process: GO:0006508 - proteolysis [Evidence IEA,IEA]; Yps1p 2430717 YPS1 30034724 YPS1 Sugiyamaella lignohabitans Yps1p XP_018737631.1 2429551 R 796027 CDS AWJ20_2779 30034727 2435308..2436918 B 1 NC_031674.1 Essential N-acetylglucosamine-phosphate mutase; converts GlcNAc-6-P to GlcNAc-1-P, which is a precursor for the biosynthesis of chitin and for the formation of N-glycosylated mannoproteins and glycosylphosphatidylinositol anchors; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005829 - cytosol [Evidence IBA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0016868 - intramolecular transferase activity, phosphotransferases [Evidence IEA]; GO_function: GO:0016853 - isomerase activity [Evidence IEA]; GO_function: GO:0000287 - magnesium ion binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004610 - phosphoacetylglucosamine mutase activity [Evidence IEA,IEA]; GO_function: GO:0004610 - phosphoacetylglucosamine mutase activity [Evidence IMP,ISS] [PMID 8174553]; GO_function: GO:0004614 - phosphoglucomutase activity [Evidence IBA]; GO_process: GO:0006048 - UDP-N-acetylglucosamine biosynthetic process [Evidence IBA,IEA]; GO_process: GO:0005975 - carbohydrate metabolic process [Evidence IEA]; GO_process: GO:0034221 - fungal-type cell wall chitin biosynthetic process [Evidence IMP] [PMID 8174553]; GO_process: GO:0019255 - glucose 1-phosphate metabolic process [Evidence IBA]; phosphoacetylglucosamine mutase PCM1 2436918 PCM1 30034727 PCM1 Sugiyamaella lignohabitans phosphoacetylglucosamine mutase PCM1 XP_018737632.1 2435308 D 796027 CDS AWJ20_2780 30034729 2438651..2439277 B 1 NC_031674.1 uncharacterized protein 2439277 30034729 AWJ20_2780 Sugiyamaella lignohabitans uncharacterized protein XP_018737633.1 2438651 D 796027 CDS AWJ20_2781 30034730 complement(2439346..2440077) B 1 NC_031674.1 kinetochore protein Spc25 2440077 spc25 30034730 spc25 Sugiyamaella lignohabitans kinetochore protein Spc25 XP_018737634.1 2439346 R 796027 CDS AWJ20_2782 30034731 2440492..2442396 B 1 NC_031674.1 Cytoplasmic hypothetical protein; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; Kel3p 2442396 KEL3 30034731 KEL3 Sugiyamaella lignohabitans Kel3p XP_018737635.1 2440492 D 796027 CDS AWJ20_2783 30034732 complement(2443919..2444317) B 1 NC_031674.1 uncharacterized protein 2444317 30034732 AWJ20_2783 Sugiyamaella lignohabitans uncharacterized protein XP_018737636.1 2443919 R 796027 CDS AWJ20_2784 30034733 complement(2444476..2445726) B 1 NC_031674.1 uncharacterized protein 2445726 30034733 AWJ20_2784 Sugiyamaella lignohabitans uncharacterized protein XP_018737637.1 2444476 R 796027 CDS AWJ20_2785 30034734 2448403..2450121 B 1 NC_031674.1 ATP sulfurylase; catalyzes the primary step of intracellular sulfate activation, essential for assimilatory reduction of sulfate to sulfide, involved in methionine metabolism; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016779 - nucleotidyltransferase activity [Evidence IEA]; GO_function: GO:0004781 - sulfate adenylyltransferase (ATP) activity [Evidence IEA,IEA,IEA]; GO_function: GO:0004781 - sulfate adenylyltransferase (ATP) activity [Evidence IDA] [PMID 10092498]; GO_function: GO:0004781 - sulfate adenylyltransferase (ATP) activity [Evidence IMP] [PMID 197388]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0019344 - cysteine biosynthetic process [Evidence IEA]; GO_process: GO:0070814 - hydrogen sulfide biosynthetic process [Evidence IEA]; GO_process: GO:0009086 - methionine biosynthetic process [Evidence IEA]; GO_process: GO:0000103 - sulfate assimilation [Evidence IEA,IEA]; GO_process: GO:0019379 - sulfate assimilation, phosphoadenylyl sulfate reduction by phosphoadenylyl-sulfate reductase (thioredoxin) [Evidence IMP] [PMID 197388]; GO_process: GO:0000096 - sulfur amino acid metabolic process [Evidence IEA]; GO_process: GO:0000096 - sulfur amino acid metabolic process [Evidence IMP] [PMID 1101032]; sulfate adenylyltransferase 2450121 MET3 30034734 MET3 Sugiyamaella lignohabitans sulfate adenylyltransferase XP_018737638.1 2448403 D 796027 CDS AWJ20_2786 30034735 complement(2450322..2451620) B 1 NC_031674.1 Max-like protein X 2451620 30034735 AWJ20_2786 Sugiyamaella lignohabitans Max-like protein X XP_018737639.1 2450322 R 796027 CDS AWJ20_2787 30034736 2453889..2455475 B 1 NC_031674.1 ubiquitin-protein transferase activating protein CDC20 2455475 CDC20 30034736 CDC20 Sugiyamaella lignohabitans ubiquitin-protein transferase activating protein CDC20 XP_018737640.1 2453889 D 796027 CDS AWJ20_2788 30034737 complement(2455669..2456817) B 1 NC_031674.1 Type 2C protein phosphatase (PP2C); dephosphorylates Hog1p, inactivating osmosensing MAPK cascade; involved in Fus3p activation during pheromone response; deletion affects precursor tRNA splicing, mitochondrial inheritance, and sporulation; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11113180]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11113180]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004721 - phosphoprotein phosphatase activity [Evidence IEA,IEA]; GO_function: GO:0004722 - protein serine/threonine phosphatase activity [Evidence IEA]; GO_function: GO:0004722 - protein serine/threonine phosphatase activity [Evidence IDA] [PMID 10580002]; GO_process: GO:0000173 - inactivation of MAPK activity involved in osmosensory signaling pathway [Evidence IDA,IGI,IMP] [PMID 11113180]; GO_process: GO:0000001 - mitochondrion inheritance [Evidence IMP] [PMID 9529388]; GO_process: GO:0000750 - pheromone-dependent signal transduction involved in conjugation with cellular fusion [Evidence IMP] [PMID 20400943]; GO_process: GO:0006470 - protein dephosphorylation [Evidence IEA]; GO_process: GO:0006470 - protein dephosphorylation [Evidence IDA] [PMID 10580002]; GO_process: GO:0006470 - protein dephosphorylation [Evidence IDA] [PMID 11113180]; GO_process: GO:0006950 - response to stress [Evidence IEA]; GO_process: GO:0006388 - tRNA splicing, via endonucleolytic cleavage and ligation [Evidence IMP] [PMID 8196609]; type 2C protein phosphatase PTC1 2456817 PTC1 30034737 PTC1 Sugiyamaella lignohabitans type 2C protein phosphatase PTC1 XP_018737641.1 2455669 R 796027 CDS AWJ20_2789 30034738 complement(2459689..2460750) B 1 NC_031674.1 Activating gamma subunit of the AMP-activated Snf1p kinase complex; additional subunits of the complex are Snf1p and a Sip1p/Sip2p/Gal83p family member; activates glucose-repressed genes, represses glucose-induced genes; role in sporulation, and peroxisome biogenesis; protein abundance increases in response to DNA replication stress; GO_component: GO:0031588 - AMP-activated protein kinase complex [Evidence IDA] [PMID 12393914]; GO_component: GO:0031588 - AMP-activated protein kinase complex [Evidence IDA,IPI] [PMID 2481228]; GO_component: GO:0031588 - AMP-activated protein kinase complex [Evidence IPI] [PMID 9121458]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 17237508]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 2481228]; GO_component: GO:0005641 - nuclear envelope lumen [Evidence IDA] [PMID 17237508]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 17237508]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 2481228]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 12562756]; GO_function: GO:0004679 - AMP-activated protein kinase activity [Evidence IMP] [PMID 11486005]; GO_function: GO:0004679 - AMP-activated protein kinase activity [Evidence IGI,IMP] [PMID 2557546]; GO_function: GO:0004679 - AMP-activated protein kinase activity [Evidence IMP] [PMID 7913470]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0030554 - adenyl nucleotide binding [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0043539 - protein serine/threonine kinase activator activity [Evidence IMP] [PMID 11486005]; GO_function: GO:0043539 - protein serine/threonine kinase activator activity [Evidence IGI,IMP] [PMID 2557546]; GO_process: GO:0005975 - carbohydrate metabolic process [Evidence IEA]; GO_process: GO:0007031 - peroxisome organization [Evidence IMP] [PMID 1355328]; GO_process: GO:0045722 - positive regulation of gluconeogenesis [Evidence IMP,IPI] [PMID 2481228]; GO_process: GO:0006468 - protein phosphorylation [Evidence IMP] [PMID 11486005]; GO_process: GO:0006468 - protein phosphorylation [Evidence IMP] [PMID 2557546]; GO_process: GO:0006468 - protein phosphorylation [Evidence IGI,IMP] [PMID 7913470]; GO_process: GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence IGI] [PMID 2557546]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0001302 - replicative cell aging [Evidence IMP] [PMID 10921902]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; AMP-activated serine/threonine-protein kinase regulatory subunit SNF4 2460750 SNF4 30034738 SNF4 Sugiyamaella lignohabitans AMP-activated serine/threonine-protein kinase regulatory subunit SNF4 XP_018737642.1 2459689 R 796027 CDS AWJ20_2790 30034740 2462028..2463578 B 1 NC_031674.1 Protein disulfide isomerase; multifunctional protein of ER lumen, essential for formation of disulfide bonds in secretory and cell-surface proteins, unscrambles non-native disulfide bonds; key regulator of Ero1p; forms complex with Mnl1p that has exomannosidase activity, processing unfolded protein-bound Man8GlcNAc2 oligosaccharides to Man7GlcNAc2, promoting degradation in unfolded protein response; PDI1 has a paralog, EUG1, that arose from the whole genome duplication; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA,IEA]; GO_component: GO:0005788 - endoplasmic reticulum lumen [Evidence IEA]; GO_component: GO:0005788 - endoplasmic reticulum lumen [Evidence IDA] [PMID 1761554]; GO_function: GO:0016853 - isomerase activity [Evidence IEA,IEA]; GO_function: GO:0005515 - protein binding [Evidence IPI] [PMID 16002399]; GO_function: GO:0003756 - protein disulfide isomerase activity [Evidence IEA]; GO_function: GO:0003756 - protein disulfide isomerase activity [Evidence IMP] [PMID 11157982]; GO_function: GO:0003756 - protein disulfide isomerase activity [Evidence IDA] [PMID 16002399]; GO_function: GO:0003756 - protein disulfide isomerase activity [Evidence IDA] [PMID 16413482]; GO_function: GO:0015035 - protein disulfide oxidoreductase activity [Evidence IEA]; GO_function: GO:0015035 - protein disulfide oxidoreductase activity [Evidence IDA] [PMID 16002399]; GO_function: GO:0051082 - unfolded protein binding [Evidence IDA] [PMID 16002399]; GO_process: GO:0045454 - cell redox homeostasis [Evidence IEA]; GO_process: GO:0006662 - glycerol ether metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; GO_process: GO:0006457 - protein folding [Evidence IMP] [PMID 11157982]; protein disulfide isomerase PDI1 2463578 PDI1 30034740 PDI1 Sugiyamaella lignohabitans protein disulfide isomerase PDI1 XP_018737643.1 2462028 D 796027 CDS AWJ20_2791 30034741 complement(2463797..2465227) B 1 NC_031674.1 Acetylated cis-Golgi protein, involved in ER to Golgi transport; homolog of human GRASP65; forms a complex with the coiled-coil protein Bug1p; mutants are compromised for the fusion of ER-derived vesicles with Golgi membranes; protein abundance increases in response to DNA replication stress; GO_component: GO:0030127 - COPII vesicle coat [Evidence IDA] [PMID 17261844]; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA,IEA]; GO_component: GO:0000139 - Golgi membrane [Evidence IDA] [PMID 17261844]; GO_component: GO:0005801 - cis-Golgi network [Evidence IDA,IMP] [PMID 17261844]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 10417390]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006888 - ER to Golgi vesicle-mediated transport [Evidence IGI,IMP] [PMID 17261844]; GO_process: GO:0007030 - Golgi organization [Evidence ISS] [PMID 10417390]; GO_process: GO:0009306 - protein secretion [Evidence IMP] [PMID 20156967]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IEA]; Grh1p 2465227 GRH1 30034741 GRH1 Sugiyamaella lignohabitans Grh1p XP_018737644.1 2463797 R 796027 CDS AWJ20_2792 30034742 2471696..2473804 B 1 NC_031674.1 uncharacterized protein 2473804 30034742 AWJ20_2792 Sugiyamaella lignohabitans uncharacterized protein XP_018737645.1 2471696 D 796027 CDS AWJ20_2793 30034743 complement(2473963..2474793) B 1 NC_031674.1 Component of the SWR1 complex; complex exchanges histone variant H2AZ (Htz1p) for chromatin-bound histone H2A; protein abundance increases in response to DNA replication stress; relocalizes to the cytosol in response to hypoxia; GO_component: GO:0000812 - Swr1 complex [Evidence IDA] [PMID 14645854]; GO_component: GO:0000812 - Swr1 complex [Evidence IDA] [PMID 14690608]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 22932476]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22932476]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0016568 - chromatin modification [Evidence IEA]; GO_process: GO:0006338 - chromatin remodeling [Evidence IDA] [PMID 14645854]; GO_process: GO:0006338 - chromatin remodeling [Evidence IGI,IPI] [PMID 14690608]; GO_process: GO:0043486 - histone exchange [Evidence IMP] [PMID 16299513]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Swc5p 2474793 SWC5 30034743 SWC5 Sugiyamaella lignohabitans Swc5p XP_018737646.1 2473963 R 796027 CDS AWJ20_2794 30034744 complement(2476627..2479710) B 1 NC_031674.1 DNA Polymerase phi; has sequence similarity to the human MybBP1A and weak sequence similarity to B-type DNA polymerases, not required for chromosomal DNA replication; required for the synthesis of rRNA; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 12093911]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 22842922]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0003887 - DNA-directed DNA polymerase activity [Evidence IDA,ISS] [PMID 12093911]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016779 - nucleotidyltransferase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006260 - DNA replication [Evidence IMP] [PMID 12093911]; GO_process: GO:0006139 - nucleobase-containing compound metabolic process [Evidence IEA]; GO_process: GO:0009303 - rRNA transcription [Evidence IMP] [PMID 12093911]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Pol5p 2479710 POL5 30034744 POL5 Sugiyamaella lignohabitans Pol5p XP_018737647.1 2476627 R 796027 CDS AWJ20_2795 30034745 2481921..2484341 B 1 NC_031674.1 Mitochondrial inner membrane half-type ABC transporter; required for respiratory growth at high temperature; localizes to vacuole membrane in response to H2O2; similar to human TAP1 and TAP2 implicated in bare lymphocyte syndrome and Wegener-like granulomatosis; GO_component: GO:0016021 - integral component of membrane [Evidence IBA,IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IDA] [PMID 11251115]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005886 - plasma membrane [Evidence IRD]; GO_component: GO:0005774 - vacuolar membrane [Evidence IDA] [PMID 23509072]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016887 - ATPase activity [Evidence IEA]; GO_function: GO:0042626 - ATPase activity, coupled to transmembrane movement of substances [Evidence IEA]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_function: GO:0015421 - oligopeptide-transporting ATPase activity [Evidence IBA]; GO_function: GO:0015421 - oligopeptide-transporting ATPase activity [Evidence ISA] [PMID 11251115]; GO_function: GO:0005215 - transporter activity [Evidence IEA]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0070301 - cellular response to hydrogen peroxide [Evidence IDA] [PMID 23509072]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0090374 - oligopeptide export from mitochondrion [Evidence ISA] [PMID 11251115]; GO_process: GO:0006857 - oligopeptide transport [Evidence ISA] [PMID 11251115]; GO_process: GO:0055085 - transmembrane transport [Evidence IBA,IEA]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; ATP-binding cassette permease MDL2 2484341 MDL2 30034745 MDL2 Sugiyamaella lignohabitans ATP-binding cassette permease MDL2 XP_018737648.1 2481921 D 796027 CDS AWJ20_2796 30034746 complement(2484461..2485522) B 1 NC_031674.1 uncharacterized protein 2485522 30034746 AWJ20_2796 Sugiyamaella lignohabitans uncharacterized protein XP_018737649.1 2484461 R 796027 CDS AWJ20_2797 30034747 2486106..2487551 B 1 NC_031674.1 L-homoserine-O-acetyltransferase; catalyzes the conversion of homoserine to O-acetyl homoserine which is the first step of the methionine biosynthetic pathway; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_function: GO:0004414 - homoserine O-acetyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0004414 - homoserine O-acetyltransferase activity [Evidence IDA,IMP] [PMID 3301801]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016746 - transferase activity, transferring acyl groups [Evidence IEA]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0009092 - homoserine metabolic process [Evidence IDA,IMP] [PMID 3301801]; GO_process: GO:0009086 - methionine biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0009086 - methionine biosynthetic process [Evidence IMP] [PMID 6035500]; GO_process: GO:0000096 - sulfur amino acid metabolic process [Evidence IMP] [PMID 1101032]; homoserine O-acetyltransferase 2487551 MET2 30034747 MET2 Sugiyamaella lignohabitans homoserine O-acetyltransferase XP_018737650.1 2486106 D 796027 CDS AWJ20_2798 30034748 2489039..2491744 B 1 NC_031674.1 uncharacterized protein 2491744 30034748 AWJ20_2798 Sugiyamaella lignohabitans uncharacterized protein XP_018737651.1 2489039 D 796027 CDS AWJ20_2799 30034749 2492626..2493639 B 1 NC_031674.1 Essential 18S rRNA dimethylase (dimethyladenosine transferase); responsible for conserved m6(2)Am6(2)A dimethylation in 3'-terminal loop of 18S rRNA, part of 90S and 40S pre-particles in nucleolus, involved in pre-ribosomal RNA processing; GO_component: GO:0030686 - 90S preribosome [Evidence IDA] [PMID 12150911]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IC] [PMID 8064863]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_function: GO:0052909 - 18S rRNA (adenine(1779)-N(6)/adenine(1780)-N(6))- dimethyltransferase activity [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0008168 - methyltransferase activity [Evidence IEA]; GO_function: GO:0016433 - rRNA (adenine) methyltransferase activity [Evidence IEA]; GO_function: GO:0000179 - rRNA (adenine-N6,N6-)-dimethyltransferase activity [Evidence IEA]; GO_function: GO:0000179 - rRNA (adenine-N6,N6-)-dimethyltransferase activity [Evidence ISS] [PMID 8064863]; GO_function: GO:0008649 - rRNA methyltransferase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0000462 - maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 8064863]; GO_process: GO:0032259 - methylation [Evidence IEA]; GO_process: GO:0031167 - rRNA methylation [Evidence IEA,IEA]; GO_process: GO:0000154 - rRNA modification [Evidence IEA]; GO_process: GO:0000154 - rRNA modification [Evidence IMP] [PMID 8064863]; GO_process: GO:0006364 - rRNA processing [Evidence IEA,IEA]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; Dim1p 2493639 DIM1 30034749 DIM1 Sugiyamaella lignohabitans Dim1p XP_018737652.1 2492626 D 796027 CDS AWJ20_2800 30034752 complement(2493818..2497213) B 1 NC_031674.1 UDP-glucose:sterol glucosyltransferase; conserved enzyme involved in synthesis of sterol glucoside membrane lipids; in contrast to ATG26 from P. pastoris, S. cerevisiae ATG26 is not involved in autophagy; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_function: GO:0016906 - sterol 3-beta-glucosyltransferase activity [Evidence IEA]; GO_function: GO:0016906 - sterol 3-beta-glucosyltransferase activity [Evidence IDA] [PMID 10224056]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA]; GO_function: GO:0016758 - transferase activity, transferring hexosyl groups [Evidence IEA]; GO_process: GO:0032120 - ascospore-type prospore membrane assembly [Evidence IGI] [PMID 18756268]; GO_process: GO:0005975 - carbohydrate metabolic process [Evidence IEA]; GO_process: GO:0030259 - lipid glycosylation [Evidence IEA]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006694 - steroid biosynthetic process [Evidence IEA]; GO_process: GO:0008202 - steroid metabolic process [Evidence IEA]; GO_process: GO:0016126 - sterol biosynthetic process [Evidence IEA]; GO_process: GO:0016125 - sterol metabolic process [Evidence IMP] [PMID 10224056]; GO_process: GO:0006810 - transport [Evidence IEA]; Atg26p 2497213 ATG26 30034752 ATG26 Sugiyamaella lignohabitans Atg26p XP_018737653.1 2493818 R 796027 CDS AWJ20_2801 30034753 complement(2501805..2502560) B 1 NC_031674.1 SNAP receptor PEP12 2502560 PEP12 30034753 PEP12 Sugiyamaella lignohabitans SNAP receptor PEP12 XP_018737654.1 2501805 R 796027 CDS AWJ20_2802 30034754 2503976..2508106 B 1 NC_031674.1 transcription factor TFIIIC subunit TFC3 2508106 TFC3 30034754 TFC3 Sugiyamaella lignohabitans transcription factor TFIIIC subunit TFC3 XP_018737655.1 2503976 D 796027 CDS AWJ20_2803 30034755 2508583..2509971 B 1 NC_031674.1 uncharacterized protein 2509971 30034755 AWJ20_2803 Sugiyamaella lignohabitans uncharacterized protein XP_018737656.1 2508583 D 796027 CDS AWJ20_2804 30034756 2510885..2511436 B 1 NC_031674.1 uncharacterized protein 2511436 30034756 AWJ20_2804 Sugiyamaella lignohabitans uncharacterized protein XP_018737657.1 2510885 D 796027 CDS AWJ20_2805 30034757 2513977..2515047 B 1 NC_031674.1 C-3 sterol dehydrogenase; catalyzes the second of three steps required to remove two C-4 methyl groups from an intermediate in ergosterol biosynthesis; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 11279045]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IDA] [PMID 12119386]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0003854 - 3-beta-hydroxy-delta5-steroid dehydrogenase activity [Evidence IEA]; GO_function: GO:0000252 - C-3 sterol dehydrogenase (C-4 sterol decarboxylase) activity [Evidence IDA] [PMID 9811880]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor [Evidence IEA]; GO_function: GO:0047012 - sterol-4-alpha-carboxylate 3-dehydrogenase (decarboxylating) activity [Evidence IEA]; GO_process: GO:0006696 - ergosterol biosynthetic process [Evidence IDA] [PMID 9811880]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0006694 - steroid biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0008202 - steroid metabolic process [Evidence IEA]; GO_process: GO:0016126 - sterol biosynthetic process [Evidence IEA]; sterol-4-alpha-carboxylate 3-dehydrogenase (decarboxylating) 2515047 ERG26 30034757 ERG26 Sugiyamaella lignohabitans sterol-4-alpha-carboxylate 3-dehydrogenase (decarboxylating) XP_018737658.1 2513977 D 796027 CDS AWJ20_2806 30034758 2518058..2518678 B 1 NC_031674.1 Subunit of the RNA polymerase II mediator complex; associates with core polymerase subunits to form the RNA polymerase II holoenzyme; essential for transcriptional regulation; GO_component: GO:0070847 - core mediator complex [Evidence IDA] [PMID 9891034]; GO_component: GO:0016592 - mediator complex [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0000978 - RNA polymerase II core promoter proximal region sequence-specific DNA binding [Evidence IDA] [PMID 12054864]; GO_function: GO:0001104 - RNA polymerase II transcription cofactor activity [Evidence IEA]; GO_function: GO:0001106 - RNA polymerase II transcription corepressor activity [Evidence IPI] [PMID 16528100]; GO_function: GO:0017025 - TBP-class protein binding [Evidence IDA] [PMID 16964259]; GO_function: GO:0005198 - structural molecule activity [Evidence IMP] [PMID 18381891]; GO_process: GO:0000122 - negative regulation of transcription from RNA polymerase II promoter [Evidence IDA] [PMID 15705057]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 18381891]; GO_process: GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence IEA]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Med8p 2518678 MED8 30034758 MED8 Sugiyamaella lignohabitans Med8p XP_018737659.1 2518058 D 796027 CDS AWJ20_2807 30034759 complement(2518885..2519757) B 1 NC_031674.1 Nucleolar protein involved in the early steps of 35S rRNA processing; interacts with Faf1p; member of a transcriptionally co-regulated set of genes called the RRB regulon; essential gene; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 14690591]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14690591]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0000480 - endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 16762320]; GO_process: GO:0000447 - endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 16762320]; GO_process: GO:0000472 - endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 16762320]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; Fcf2p 2519757 FCF2 30034759 FCF2 Sugiyamaella lignohabitans Fcf2p XP_018737660.1 2518885 R 796027 CDS AWJ20_2808 30034760 complement(2520047..2521441) B 1 NC_031674.1 Subunit of DNA primase; DNA primase is required for DNA synthesis and double-strand break repair; GO_component: GO:0005658 - alpha DNA polymerase:primase complex [Evidence IDA] [PMID 22593576]; GO_component: GO:0005658 - alpha DNA polymerase:primase complex [Evidence IDA] [PMID 3888995]; GO_component: GO:0005635 - nuclear envelope [Evidence IDA] [PMID 15282802]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 15282802]; GO_component: GO:1990077 - primosome complex [Evidence IEA]; GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0003896 - DNA primase activity [Evidence IEA]; GO_function: GO:0003896 - DNA primase activity [Evidence IDA] [PMID 3061469]; GO_function: GO:0003896 - DNA primase activity [Evidence IDA] [PMID 3888995]; GO_function: GO:0003896 - DNA primase activity [Evidence IGI,IMP] [PMID 8436268]; GO_function: GO:0003899 - DNA-directed RNA polymerase activity [Evidence IEA]; GO_function: GO:0051536 - iron-sulfur cluster binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016779 - nucleotidyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0003697 - single-stranded DNA binding [Evidence IDA] [PMID 20404922]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006260 - DNA replication [Evidence IEA]; GO_process: GO:0006260 - DNA replication [Evidence IMP] [PMID 2023935]; GO_process: GO:0006270 - DNA replication initiation [Evidence IC] [PMID 3888995]; GO_process: GO:0006269 - DNA replication, synthesis of RNA primer [Evidence IEA,IEA]; GO_process: GO:0006269 - DNA replication, synthesis of RNA primer [Evidence IDA] [PMID 2644256]; GO_process: GO:0006302 - double-strand break repair [Evidence IMP] [PMID 10025407]; GO_process: GO:0006273 - lagging strand elongation [Evidence IC] [PMID 3888995]; DNA primase subunit PRI2 2521441 PRI2 30034760 PRI2 Sugiyamaella lignohabitans DNA primase subunit PRI2 XP_018737661.1 2520047 R 796027 CDS AWJ20_2809 30034761 2522522..2523514 B 1 NC_031674.1 Subunit of the Hap2p/3p/4p/5p CCAAT-binding complex; complex is heme-activated and glucose repressed; complex is a transcriptional activator and global regulator of respiratory gene expression; required for assembly and DNA binding activity of the complex; GO_component: GO:0016602 - CCAAT-binding factor complex [Evidence IEA]; GO_component: GO:0016602 - CCAAT-binding factor complex [Evidence IDA,IPI] [PMID 7828851]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0003677 - DNA binding [Evidence IPI] [PMID 15343339]; GO_function: GO:0000978 - RNA polymerase II core promoter proximal region sequence-specific DNA binding [Evidence IDA] [PMID 7828851]; GO_function: GO:0001077 - RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription [Evidence ISA] [PMID 16215174]; GO_function: GO:0001077 - RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription [Evidence IC] [PMID 7828851]; GO_function: GO:0046982 - protein heterodimerization activity [Evidence IEA]; GO_function: GO:0003700 - sequence-specific DNA binding transcription factor activity [Evidence IEA]; GO_process: GO:0000436 - carbon catabolite activation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 12614847]; GO_process: GO:0043457 - regulation of cellular respiration [Evidence IGI] [PMID 7828851]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA,IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Hap5p 2523514 HAP5 30034761 HAP5 Sugiyamaella lignohabitans Hap5p XP_018737662.1 2522522 D 796027 CDS AWJ20_2810 30034763 2525069..2525908 B 1 NC_031674.1 Mitochondrial dicarboxylate carrier; integral membrane protein, catalyzes a dicarboxylate-phosphate exchange across the inner mitochondrial membrane, transports cytoplasmic dicarboxylates into the mitochondrial matrix; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005740 - mitochondrial envelope [Evidence IDA] [PMID 15591051]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0015297 - antiporter activity [Evidence IEA]; GO_function: GO:0005310 - dicarboxylic acid transmembrane transporter activity [Evidence IDA] [PMID 9020177]; GO_function: GO:0005310 - dicarboxylic acid transmembrane transporter activity [Evidence IDA] [PMID 9559855]; GO_process: GO:0006835 - dicarboxylic acid transport [Evidence IDA] [PMID 9020177]; GO_process: GO:0006835 - dicarboxylic acid transport [Evidence IDA] [PMID 9559855]; GO_process: GO:0006817 - phosphate ion transport [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Dic1p 2525908 DIC1 30034763 DIC1 Sugiyamaella lignohabitans Dic1p XP_018737663.1 2525069 D 796027 CDS AWJ20_2811 30034764 complement(2527846..2533908) B 1 NC_031674.1 PIK-related protein kinase and rapamycin target; subunit of TORC1, a complex that controls growth in response to nutrients by regulating translation, transcription, ribosome biogenesis, nutrient transport and autophagy; involved in meiosis; TOR1 has a paralog, TOR2, that arose from the whole genome duplication; GO_component: GO:0000139 - Golgi membrane [Evidence IDA] [PMID 12719473]; GO_component: GO:0031931 - TORC1 complex [Evidence IPI] [PMID 12408816]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 16900101]; GO_component: GO:0010008 - endosome membrane [Evidence IDA] [PMID 12719473]; GO_component: GO:0031234 - extrinsic component of cytoplasmic side of plasma membrane [Evidence IDA] [PMID 12631735]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 12719473]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 16900101]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 10973982]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0008144 - drug binding [Evidence IEA]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016773 - phosphotransferase activity, alcohol group as acceptor [Evidence IEA]; GO_function: GO:0005515 - protein binding [Evidence IPI] [PMID 12631735]; GO_function: GO:0004672 - protein kinase activity [Evidence IMP] [PMID 10329624]; GO_function: GO:0004674 - protein serine/threonine kinase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016772 - transferase activity, transferring phosphorus-containing groups [Evidence IEA]; GO_process: GO:0031929 - TOR signaling [Evidence IC] [PMID 12408816]; GO_process: GO:0031929 - TOR signaling [Evidence IMP] [PMID 12719473]; GO_process: GO:0031929 - TOR signaling [Evidence IMP] [PMID 8186460]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IMP] [PMID 17698581]; GO_process: GO:0031505 - fungal-type cell wall organization [Evidence IMP] [PMID 14736892]; GO_process: GO:0007126 - meiotic nuclear division [Evidence IMP] [PMID 9096347]; GO_process: GO:0031930 - mitochondria-nucleus signaling pathway [Evidence IMP] [PMID 11997479]; GO_process: GO:0010507 - negative regulation of autophagy [Evidence IGI] [PMID 9461583]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; GO_process: GO:0006468 - protein phosphorylation [Evidence IEA]; GO_process: GO:0051726 - regulation of cell cycle [Evidence IMP] [PMID 8741837]; GO_process: GO:0001558 - regulation of cell growth [Evidence TAS] [PMID 11057898]; GO_process: GO:0001558 - regulation of cell growth [Evidence IMP] [PMID 12171921]; GO_process: GO:0090153 - regulation of sphingolipid biosynthetic process [Evidence IMP] [PMID 23363605]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IMP] [PMID 10198052]; GO_process: GO:0007165 - signal transduction [Evidence TAS] [PMID 8741837]; GO_process: GO:0042790 - transcription of nuclear large rRNA transcript from RNA polymerase I promoter [Evidence IMP] [PMID 16900101]; GO_process: GO:0006413 - translational initiation [Evidence IMP] [PMID 8741837]; phosphatidylinositol kinase-related protein kinase TOR1 2533908 TOR1 30034764 TOR1 Sugiyamaella lignohabitans phosphatidylinositol kinase-related protein kinase TOR1 XP_018737664.1 2527846 R 796027 CDS AWJ20_2812 30034765 complement(2533995..2534660) B 1 NC_031674.1 PIK-related protein kinase and rapamycin target; subunit of TORC1, a complex that regulates growth in response to nutrients and TORC2, a complex that regulates cell-cycle dependent polarization of the actin cytoskeleton; involved in meiosis; TOR2 has a paralog, TOR1, that arose from the whole genome duplication; GO_component: GO:0031931 - TORC1 complex [Evidence IPI] [PMID 12408816]; GO_component: GO:0031932 - TORC2 complex [Evidence IPI] [PMID 12408816]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 18723607]; GO_component: GO:0031234 - extrinsic component of cytoplasmic side of plasma membrane [Evidence IDA] [PMID 12631735]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 8846782]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 10973982]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0004430 - 1-phosphatidylinositol 4-kinase activity [Evidence IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0008144 - drug binding [Evidence IEA]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016773 - phosphotransferase activity, alcohol group as acceptor [Evidence IEA]; GO_function: GO:0005515 - protein binding [Evidence IPI] [PMID 12631735]; GO_function: GO:0004674 - protein serine/threonine kinase activity [Evidence IEA]; GO_function: GO:0004674 - protein serine/threonine kinase activity [Evidence IDA] [PMID 16055732]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016772 - transferase activity, transferring phosphorus-containing groups [Evidence IEA]; GO_process: GO:0031929 - TOR signaling [Evidence IC] [PMID 12408816]; GO_process: GO:0031929 - TOR signaling [Evidence IMP] [PMID 12719473]; GO_process: GO:0031929 - TOR signaling [Evidence IMP] [PMID 8186460]; GO_process: GO:0030037 - actin filament reorganization involved in cell cycle [Evidence TAS] [PMID 9038344]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0007010 - cytoskeleton organization [Evidence IMP] [PMID 9475724]; GO_process: GO:0030950 - establishment or maintenance of actin cytoskeleton polarity [Evidence IMP] [PMID 12408816]; GO_process: GO:0010507 - negative regulation of autophagy [Evidence IGI] [PMID 9461583]; GO_process: GO:0046854 - phosphatidylinositol phosphorylation [Evidence IEA]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; GO_process: GO:2001108 - positive regulation of Rho guanyl-nucleotide exchange factor activity [Evidence IGI,IMP] [PMID 9038344]; GO_process: GO:0035025 - positive regulation of Rho protein signal transduction [Evidence IGI,IMP] [PMID 9038344]; GO_process: GO:0045807 - positive regulation of endocytosis [Evidence IMP] [PMID 14593073]; GO_process: GO:0006468 - protein phosphorylation [Evidence IEA]; GO_process: GO:0051726 - regulation of cell cycle [Evidence TAS] [PMID 9475724]; GO_process: GO:0001558 - regulation of cell growth [Evidence TAS] [PMID 11057898]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IMP] [PMID 10198052]; GO_process: GO:0007165 - signal transduction [Evidence TAS] [PMID 8186460]; phosphatidylinositol kinase-related protein kinase TOR2 2534660 TOR2 30034765 TOR2 Sugiyamaella lignohabitans phosphatidylinositol kinase-related protein kinase TOR2 XP_018737665.1 2533995 R 796027 CDS AWJ20_2813 30034766 2536594..2537388 B 1 NC_031674.1 Nucleolar protein implicated in ribosome biogenesis; deletion extends chronological lifespan; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 17425675]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IDA] [PMID 16702403]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0042274 - ribosomal small subunit biogenesis [Evidence IGI] [PMID 17425675]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; Tma23p 2537388 TMA23 30034766 TMA23 Sugiyamaella lignohabitans Tma23p XP_018737666.1 2536594 D 796027 CDS AWJ20_2814 30034767 2539249..2541492 B 1 NC_031674.1 Translation termination factor eRF3; has a role in mRNA deadenylation and decay; altered protein conformation creates the [PSI(+)] prion that alters translational fidelity and results in a nonsense suppressor phenotype; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0010494 - cytoplasmic stress granule [Evidence IDA] [PMID 23451152]; GO_component: GO:0018444 - translation release factor complex [Evidence IDA] [PMID 7556078]; GO_function: GO:0005525 - GTP binding [Evidence IEA,IEA]; GO_function: GO:0003924 - GTPase activity [Evidence IEA]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0003747 - translation release factor activity [Evidence IEA]; GO_function: GO:0003747 - translation release factor activity [Evidence IDA] [PMID 20947765]; GO_process: GO:0006184 - GTP catabolic process [Evidence IEA]; GO_process: GO:0000288 - nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay [Evidence IMP,IPI] [PMID 12923185]; GO_process: GO:0006412 - translation [Evidence IEA]; GO_process: GO:0006415 - translational termination [Evidence IEA]; GO_process: GO:0006415 - translational termination [Evidence IDA] [PMID 20947765]; translation termination factor GTPase eRF3 2541492 SUP35 30034767 SUP35 Sugiyamaella lignohabitans translation termination factor GTPase eRF3 XP_018737667.1 2539249 D 796027 CDS AWJ20_2815 30034768 complement(2541949..2542545) B 1 NC_031674.1 GTP-binding protein of the rho subfamily of Ras-like proteins; involved in establishment of cell polarity; regulates protein kinase C (Pkc1p) and the cell wall synthesizing enzyme 1,3-beta-glucan synthase (Fks1p and Gsc2p); GO_component: GO:0000148 - 1,3-beta-D-glucan synthase complex [Evidence IDA] [PMID 8602515]; GO_component: GO:0005794 - Golgi apparatus [Evidence IDA] [PMID 1918143]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 8195291]; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 8195291]; GO_component: GO:0005768 - endosome [Evidence IEA]; GO_component: GO:0010008 - endosome membrane [Evidence IEA]; GO_component: GO:0000131 - incipient cellular bud site [Evidence IDA] [PMID 8195291]; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 12660244]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IDA] [PMID 16407407]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005778 - peroxisomal membrane [Evidence IEA]; GO_component: GO:0005777 - peroxisome [Evidence IEA]; GO_component: GO:0005777 - peroxisome [Evidence IDA] [PMID 15596542]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 16622836]; GO_function: GO:0005525 - GTP binding [Evidence IEA,IEA]; GO_function: GO:0003924 - GTPase activity [Evidence IDA] [PMID 11591390]; GO_function: GO:0003924 - GTPase activity [Evidence IDA] [PMID 7962098]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0030036 - actin cytoskeleton organization [Evidence IMP] [PMID 15596542]; GO_process: GO:0031532 - actin cytoskeleton reorganization [Evidence IGI,IPI] [PMID 8947028]; GO_process: GO:0007117 - budding cell bud growth [Evidence IGI,IMP] [PMID 8195291]; GO_process: GO:0045807 - positive regulation of endocytosis [Evidence IMP] [PMID 14593073]; GO_process: GO:0090037 - positive regulation of protein kinase C signaling [Evidence IDA,IMP] [PMID 8621575]; GO_process: GO:0090037 - positive regulation of protein kinase C signaling [Evidence IGI,IPI] [PMID 8846785]; GO_process: GO:0008361 - regulation of cell size [Evidence IMP] [PMID 17302939]; GO_process: GO:0090334 - regulation of cell wall (1->3)-beta-D-glucan biosynthetic process [Evidence IMP] [PMID 8602514]; GO_process: GO:0090334 - regulation of cell wall (1->3)-beta-D-glucan biosynthetic process [Evidence IDA,IMP] [PMID 8602515]; GO_process: GO:0090334 - regulation of cell wall (1->3)-beta-D-glucan biosynthetic process [Evidence IDA,IMP] [PMID 8662910]; GO_process: GO:0060178 - regulation of exocyst localization [Evidence IMP] [PMID 11283608]; GO_process: GO:0060237 - regulation of fungal-type cell wall organization [Evidence IMP] [PMID 8621575]; GO_process: GO:0032880 - regulation of protein localization [Evidence IMP] [PMID 10893184]; GO_process: GO:0032889 - regulation of vacuole fusion, non-autophagic [Evidence IMP] [PMID 11598008]; GO_process: GO:0007264 - small GTPase mediated signal transduction [Evidence IEA]; GO_process: GO:0007264 - small GTPase mediated signal transduction [Evidence IDA] [PMID 8621575]; GO_process: GO:0007264 - small GTPase mediated signal transduction [Evidence IGI] [PMID 8846785]; Rho family GTPase RHO1 2542545 RHO1 30034768 RHO1 Sugiyamaella lignohabitans Rho family GTPase RHO1 XP_018737668.1 2541949 R 796027 CDS AWJ20_2816 30034769 2545686..2547560 B 1 NC_031674.1 Phosphoinositide PI4,5P(2) binding protein, forms a complex with Slm1p; acts downstream of Mss4p in a pathway regulating actin cytoskeleton organization in response to stress; phosphorylated by the TORC2 complex; SLM2 has a paralog, SLM1, that arose from the whole genome duplication; GO_component: GO:0031932 - TORC2 complex [Evidence IPI] [PMID 15689497]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 15372071]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 15689497]; GO_function: GO:0035091 - phosphatidylinositol binding [Evidence TAS] [PMID 15372071]; GO_process: GO:0031929 - TOR signaling [Evidence IPI] [PMID 15689497]; GO_process: GO:0030036 - actin cytoskeleton organization [Evidence IGI] [PMID 15372071]; GO_process: GO:0030036 - actin cytoskeleton organization [Evidence IGI] [PMID 15689497]; GO_process: GO:0051017 - actin filament bundle assembly [Evidence IGI] [PMID 15689497]; GO_process: GO:0070941 - eisosome assembly [Evidence IGI] [PMID 21451250]; GO_process: GO:0016197 - endosomal transport [Evidence IGI] [PMID 21451250]; GO_process: GO:0030950 - establishment or maintenance of actin cytoskeleton polarity [Evidence IPI] [PMID 15689497]; GO_process: GO:0001558 - regulation of cell growth [Evidence IGI,IPI] [PMID 15689497]; Slm2p 2547560 SLM2 30034769 SLM2 Sugiyamaella lignohabitans Slm2p XP_018737669.1 2545686 D 796027 CDS AWJ20_2817 30034770 complement(2547754..2549088) B 1 NC_031674.1 uncharacterized protein 2549088 30034770 AWJ20_2817 Sugiyamaella lignohabitans uncharacterized protein XP_018737670.1 2547754 R 796027 CDS AWJ20_2818 30034771 complement(2549629..2549922) B 1 NC_031674.1 acid phosphatase (predicted) 2549922 30034771 AWJ20_2818 Sugiyamaella lignohabitans acid phosphatase (predicted) XP_018737671.1 2549629 R 796027 CDS AWJ20_2819 30034772 complement(2550464..2552644) B 1 NC_031674.1 Anillin-like protein involved in bud-site selection; required for the axial budding pattern; localizes with septins to the bud neck in mitosis and may constitute an axial landmark for the next round of budding; required for the formation and disassembly of the double septin ring structure, and generally for septin organization; in vivo substrate of Cdc28p/Clb2p; GO_component: GO:0005935 - cellular bud neck [Evidence IEA]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 22842922]; GO_component: GO:0000142 - cellular bud neck contractile ring [Evidence IDA] [PMID 22553209]; GO_function: GO:0005525 - GTP binding [Evidence IDA,IMP] [PMID 22553209]; GO_process: GO:0007120 - axial cellular bud site selection [Evidence IMP] [PMID 22553209]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0097271 - protein localization to bud neck [Evidence IMP] [PMID 22553209]; Bud4p 2552644 BUD4 30034772 BUD4 Sugiyamaella lignohabitans Bud4p XP_018737672.1 2550464 R 796027 CDS AWJ20_2820 30034774 2554212..2555909 B 1 NC_031674.1 uncharacterized protein 2555909 30034774 AWJ20_2820 Sugiyamaella lignohabitans uncharacterized protein XP_018737673.1 2554212 D 796027 CDS AWJ20_2821 30034775 complement(2556170..2556478) B 1 NC_031674.1 secretory pathway protein Pga2 (predicted) 2556478 30034775 AWJ20_2821 Sugiyamaella lignohabitans secretory pathway protein Pga2 (predicted) XP_018737674.1 2556170 R 796027 CDS AWJ20_2822 30034776 complement(2556964..2558037) B 1 NC_031674.1 uncharacterized protein 2558037 30034776 AWJ20_2822 Sugiyamaella lignohabitans uncharacterized protein XP_018737675.1 2556964 R 796027 CDS AWJ20_2823 30034777 2559113..2559739 B 1 NC_031674.1 Putative mitochondrial inner membrane transporter; proposed role in oleate metabolism and glutamate biosynthesis; member of the mitochondrial carrier (MCF) family; YMC2 has a paralog, YMC1, that arose from the whole genome duplication; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16140254]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0005342 - organic acid transmembrane transporter activity [Evidence IGI,ISS] [PMID 16140254]; GO_process: GO:0006839 - mitochondrial transport [Evidence IGI] [PMID 16140254]; GO_process: GO:0055085 - transmembrane transport [Evidence IGI,ISS] [PMID 16140254]; GO_process: GO:0006810 - transport [Evidence IEA]; Ymc2p 2559739 YMC2 30034777 YMC2 Sugiyamaella lignohabitans Ymc2p XP_018737676.1 2559113 D 796027 CDS AWJ20_2824 30034778 complement(2559954..2560406) B 1 NC_031674.1 uncharacterized protein 2560406 30034778 AWJ20_2824 Sugiyamaella lignohabitans uncharacterized protein XP_018737677.1 2559954 R 796027 CDS AWJ20_2825 30034779 2561741..2562640 B 1 NC_031674.1 Mitochondrial NAD+ transporter; involved in the transport of NAD+ into the mitochondria (see also YEA6); member of the mitochondrial carrier subfamily; disputed role as a pyruvate transporter; has putative mouse and human orthologs; YIA6 has a paralog, YEA6, that arose from the whole genome duplication; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence ISS] [PMID 10930523]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16291748]; GO_function: GO:0051724 - NAD transporter activity [Evidence IDA,IGI,IMP] [PMID 16291748]; GO_function: GO:0005477 - pyruvate secondary active transmembrane transporter activity [Evidence IMP] [PMID 12887330]; GO_function: GO:0005477 - pyruvate secondary active transmembrane transporter activity [Evidence IDA] [PMID 16291748]; GO_function: GO:0005215 - transporter activity [Evidence ISS] [PMID 10930523]; GO_process: GO:0035352 - NAD transmembrane transport [Evidence IDA,IGI,IMP] [PMID 16291748]; GO_process: GO:0006850 - mitochondrial pyruvate transport [Evidence IMP] [PMID 12887330]; GO_process: GO:0006850 - mitochondrial pyruvate transport [Evidence IDA] [PMID 16291748]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence ISS] [PMID 10930523]; Yia6p 2562640 YIA6 30034779 YIA6 Sugiyamaella lignohabitans Yia6p XP_018737678.1 2561741 D 796027 CDS AWJ20_2826 30034780 complement(2562843..2564390) B 1 NC_031674.1 Glycosylphosphatidylinositol-alpha 1,4 mannosyltransferase I; involved in GPI anchor biosynthesis, requires Pbn1p for function; homolog of mammalian PIG-M; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA,IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence ISS] [PMID 11226175]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0000030 - mannosyltransferase activity [Evidence ISS] [PMID 11226175]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA]; GO_function: GO:0016758 - transferase activity, transferring hexosyl groups [Evidence IEA]; GO_process: GO:0006506 - GPI anchor biosynthetic process [Evidence IEA,IEA,IEA]; GO_process: GO:0006506 - GPI anchor biosynthetic process [Evidence ISS] [PMID 11226175]; GO_process: GO:0006506 - GPI anchor biosynthetic process [Evidence IMP] [PMID 16134120]; GO_process: GO:0031505 - fungal-type cell wall organization [Evidence IMP] [PMID 16134120]; Gpi14p 2564390 GPI14 30034780 GPI14 Sugiyamaella lignohabitans Gpi14p XP_018737679.1 2562843 R 796027 CDS AWJ20_2827 30034781 2565301..2566599 B 1 NC_031674.1 Inositol phosphosphingolipid phospholipase C; mitochondrial membrane localized; hydrolyzes complex sphingolipids to produce ceramide; activates genes required for non-fermentable carbon source metabolism during the diauxic shift; activated by phosphatidylserine, cardiolipin, and phosphatidylglycerol; mediates Na+ and Li+ halotolerance; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 14699160]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0031307 - integral component of mitochondrial outer membrane [Evidence IDA] [PMID 17880915]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14699160]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0052712 - inositol phosphosphingolipid phospholipase activity [Evidence IDA] [PMID 11006294]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_process: GO:0046513 - ceramide biosynthetic process [Evidence IMP] [PMID 17880915]; GO_process: GO:0046513 - ceramide biosynthetic process [Evidence IMP] [PMID 23620586]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0009651 - response to salt stress [Evidence IMP] [PMID 12180980]; GO_process: GO:0030149 - sphingolipid catabolic process [Evidence IDA] [PMID 11006294]; GO_process: GO:0006665 - sphingolipid metabolic process [Evidence IEA,IEA]; inositol phosphosphingolipid phospholipase 2566599 ISC1 30034781 ISC1 Sugiyamaella lignohabitans inositol phosphosphingolipid phospholipase XP_018737680.1 2565301 D 796027 CDS AWJ20_2828 30034782 2568217..2572221 B 1 NC_031674.1 uncharacterized protein 2572221 30034782 AWJ20_2828 Sugiyamaella lignohabitans uncharacterized protein XP_018737681.1 2568217 D 796027 CDS AWJ20_2829 30034783 2572801..2573940 B 1 NC_031674.1 Substrate-recruiting cofactor of the Cdc48p-Npl4p-Ufd1p segregase; polyubiquitin binding protein that assists in the dislocation of misfolded, ERAD substrates that are subsequently delivered to the proteasome for degradation; involved in regulated destruction of ER membrane proteins such as HMG-CoA reductase (Hmg1/2p) and cytoplasmic proteins (Fbp1p); involved in mobilizing membrane bound transaction factors by regulated Ub/proteasome-dependent processing (RUP); GO_component: GO:0034098 - Cdc48p-Npl4p-Ufd1p AAA ATPase complex [Evidence IDA] [PMID 11598205]; GO_component: GO:0034098 - Cdc48p-Npl4p-Ufd1p AAA ATPase complex [Evidence IDA] [PMID 11733065]; GO_component: GO:0000837 - Doa10p ubiquitin ligase complex [Evidence IDA] [PMID 16873065]; GO_component: GO:0000837 - Doa10p ubiquitin ligase complex [Evidence IDA] [PMID 16873066]; GO_component: GO:0000839 - Hrd1p ubiquitin ligase ERAD-L complex [Evidence IDA] [PMID 16873065]; GO_component: GO:0000839 - Hrd1p ubiquitin ligase ERAD-L complex [Evidence IDA] [PMID 16873066]; GO_component: GO:1990112 - RQC complex [Evidence IDA] [PMID 23178123]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11733065]; GO_function: GO:0031593 - polyubiquitin binding [Evidence IDA] [PMID 16004872]; GO_function: GO:0043130 - ubiquitin binding [Evidence IDA] [PMID 16004872]; GO_process: GO:0071712 - ER-associated misfolded protein catabolic process [Evidence IMP] [PMID 11740563]; GO_process: GO:0071712 - ER-associated misfolded protein catabolic process [Evidence IMP] [PMID 11813000]; GO_process: GO:0030433 - ER-associated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 11739805]; GO_process: GO:0071629 - cytoplasm-associated proteasomal ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 18812321]; GO_process: GO:0070651 - nonfunctional rRNA decay [Evidence IMP] [PMID 22505030]; GO_process: GO:1900182 - positive regulation of protein localization to nucleus [Evidence IMP] [PMID 11598205]; GO_process: GO:1900182 - positive regulation of protein localization to nucleus [Evidence IMP] [PMID 11733065]; GO_process: GO:0043161 - proteasome-mediated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 20206597]; GO_process: GO:0030970 - retrograde protein transport, ER to cytosol [Evidence IMP] [PMID 11740563]; GO_process: GO:0030970 - retrograde protein transport, ER to cytosol [Evidence IMP] [PMID 11813000]; GO_process: GO:1990116 - ribosome-associated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 23358411]; GO_process: GO:0006511 - ubiquitin-dependent protein catabolic process [Evidence IEA]; polyubiquitin-binding protein UFD1 2573940 UFD1 30034783 UFD1 Sugiyamaella lignohabitans polyubiquitin-binding protein UFD1 XP_018737682.1 2572801 D 796027 CDS AWJ20_2830 30034785 complement(2574047..2574586) B 1 NC_031674.1 uncharacterized protein 2574586 30034785 AWJ20_2830 Sugiyamaella lignohabitans uncharacterized protein XP_018737683.1 2574047 R 796027 CDS AWJ20_2831 30034786 complement(2574907..2576916) B 1 NC_031674.1 uncharacterized protein 2576916 30034786 AWJ20_2831 Sugiyamaella lignohabitans uncharacterized protein XP_018737684.1 2574907 R 796027 CDS AWJ20_2832 30034787 2578387..2580345 B 1 NC_031674.1 triglyceride lipase ATG15 2580345 ATG15 30034787 ATG15 Sugiyamaella lignohabitans triglyceride lipase ATG15 XP_018737685.1 2578387 D 796027 CDS AWJ20_2833 30034788 2580679..2583387 B 1 NC_031674.1 Component of glutamine amidotransferase (GATase II); forms a complex with Dug3p to degrade glutathione (GSH) and other peptides containing a gamma-glu-X bond in an alternative pathway to GSH degradation by gamma-glutamyl transpeptidase (Ecm38p); GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 17179087]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0016805 - dipeptidase activity [Evidence IEA]; GO_function: GO:0003840 - gamma-glutamyltransferase activity [Evidence IDA,IMP] [PMID 22277648]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA,IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0008237 - metallopeptidase activity [Evidence IEA]; GO_function: GO:0008242 - omega peptidase activity [Evidence IGI] [PMID 17179087]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IGI] [PMID 17179087]; GO_process: GO:0006751 - glutathione catabolic process [Evidence IMP] [PMID 17179087]; GO_process: GO:0006751 - glutathione catabolic process [Evidence IDA,IMP] [PMID 22277648]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0006508 - proteolysis [Evidence IEA]; glutamine amidotransferase subunit DUG2 2583387 DUG2 30034788 DUG2 Sugiyamaella lignohabitans glutamine amidotransferase subunit DUG2 XP_018737686.1 2580679 D 796027 CDS AWJ20_2834 30034789 2585005..2585889 B 1 NC_031674.1 Pc12g03400 2585889 30034789 AWJ20_2834 Sugiyamaella lignohabitans Pc12g03400 XP_018737687.1 2585005 D 796027 CDS AWJ20_2835 30034790 2586382..2587062 B 1 NC_031674.1 uncharacterized protein 2587062 30034790 AWJ20_2835 Sugiyamaella lignohabitans uncharacterized protein XP_018737688.1 2586382 D 796027 CDS AWJ20_2836 30034791 2591383..2593704 B 1 NC_031674.1 Protein containing a UCS (UNC-45/CRO1/SHE4) domain; binds to myosin motor domains to regulate myosin function; involved in endocytosis, polarization of the actin cytoskeleton, and asymmetric mRNA localization; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 8625407]; GO_function: GO:0017022 - myosin binding [Evidence IDA] [PMID 12725728]; GO_process: GO:0030036 - actin cytoskeleton organization [Evidence TAS] [PMID 10792032]; GO_process: GO:0008298 - intracellular mRNA localization [Evidence IMP] [PMID 11553699]; GO_process: GO:0007533 - mating type switching [Evidence IMP] [PMID 8625407]; She4p 2593704 SHE4 30034791 SHE4 Sugiyamaella lignohabitans She4p XP_018737689.1 2591383 D 796027 CDS AWJ20_2837 30034792 complement(2593780..2594652) B 1 NC_031674.1 aldolase, putative class II aldolase/adducin domain protein, putative 2594652 30034792 AWJ20_2837 Sugiyamaella lignohabitans aldolase, putative class II aldolase/adducin domain protein, putative XP_018737690.1 2593780 R 796027 CDS AWJ20_2838 30034793 2595225..2596493 B 1 NC_031674.1 Mitochondrial beta-keto-acyl synthase; possible role in fatty acid synthesis; required for mitochondrial respiration; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0004315 - 3-oxoacyl-[acyl-carrier-protein] synthase activity [Evidence IEA]; GO_function: GO:0004315 - 3-oxoacyl-[acyl-carrier-protein] synthase activity [Evidence ISA] [PMID 15668256]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups [Evidence IEA]; GO_process: GO:0006633 - fatty acid biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0006633 - fatty acid biosynthetic process [Evidence ISA] [PMID 15668256]; GO_process: GO:0006631 - fatty acid metabolic process [Evidence IEA]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; fatty acid synthase CEM1 2596493 CEM1 30034793 CEM1 Sugiyamaella lignohabitans fatty acid synthase CEM1 XP_018737691.1 2595225 D 796027 CDS AWJ20_2840 30034796 complement(2599632..2600585) B 1 NC_031674.1 Homeobox transcriptional repressor; binds to Mcm1p and to early cell cycle boxes (ECBs) in the promoters of cell cycle-regulated genes expressed in M/G1 phase; expression is cell cycle-regulated; potential Cdc28p substrate; relocalizes from nucleus to cytoplasm upon DNA replication stress; YOX1 has a paralog, YHP1, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0000790 - nuclear chromatin [Evidence IDA] [PMID 12464632]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 15282802]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0000977 - RNA polymerase II regulatory region sequence-specific DNA binding [Evidence IDA,IMP] [PMID 12464633]; GO_function: GO:0000977 - RNA polymerase II regulatory region sequence-specific DNA binding [Evidence IDA] [PMID 20385087]; GO_function: GO:0001191 - RNA polymerase II transcription factor binding transcription factor activity involved in negative regulation of transcription [Evidence IPI] [PMID 12464633]; GO_function: GO:0001191 - RNA polymerase II transcription factor binding transcription factor activity involved in negative regulation of transcription [Evidence IMP,IPI] [PMID 20385087]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19111667]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19158363]; GO_function: GO:0003700 - sequence-specific DNA binding transcription factor activity [Evidence IEA]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0071930 - negative regulation of transcription involved in G1/S transition of mitotic cell cycle [Evidence IGI,IMP] [PMID 12464633]; GO_process: GO:0071930 - negative regulation of transcription involved in G1/S transition of mitotic cell cycle [Evidence IMP] [PMID 17314407]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA,IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Yox1p 2600585 YOX1 30034796 YOX1 Sugiyamaella lignohabitans Yox1p XP_018737692.1 2599632 R 796027 CDS AWJ20_2841 30034797 2602156..2602749 B 1 NC_031674.1 Vacuolar protein; presumably functions within the endosomal-vacuolar trafficking pathway, affecting events that determine whether plasma membrane proteins are degraded or routed to the plasma membrane; RCR2 has a paralog, RCR1, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0000324 - fungal-type vacuole [Evidence IDA] [PMID 14562095]; GO_component: GO:0000324 - fungal-type vacuole [Evidence IDA] [PMID 17287526]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISS] [PMID 15590673]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0031982 - vesicle [Evidence IDA] [PMID 17287526]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IGI] [PMID 17287526]; Rcr2p 2602749 RCR2 30034797 RCR2 Sugiyamaella lignohabitans Rcr2p XP_018737693.1 2602156 D 796027 CDS AWJ20_2842 30034798 complement(2604032..2606197) B 1 NC_031674.1 S-adenosyl-L-methionine-dependent tRNA: m5C-methyltransferase; methylates cytosine to m5C at several positions in tRNAs and intron-containing pre-tRNAs; increases proportion of tRNALeu(CAA) with m5C at wobble position in response to hydrogen peroxide, causing selective translation of mRNA from genes enriched in TTG codon; loss of NCL1 confers hypersensitivity to oxidative stress; similar to Nop2p and human proliferation associated nucleolar protein p120; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9767141]; GO_function: GO:0003723 - RNA binding [Evidence IEA,IEA]; GO_function: GO:0008168 - methyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0016428 - tRNA (cytosine-5-)-methyltransferase activity [Evidence IEA]; GO_function: GO:0016428 - tRNA (cytosine-5-)-methyltransferase activity [Evidence IDA] [PMID 10445884]; GO_function: GO:0000049 - tRNA binding [Evidence IEA]; GO_function: GO:0000049 - tRNA binding [Evidence IDA] [PMID 17567576]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0070301 - cellular response to hydrogen peroxide [Evidence IMP] [PMID 22760636]; GO_process: GO:0032259 - methylation [Evidence IEA]; GO_process: GO:0030488 - tRNA methylation [Evidence IDA] [PMID 10445884]; GO_process: GO:0008033 - tRNA processing [Evidence IEA]; GO_process: GO:0002127 - wobble base cytosine methylation [Evidence IMP] [PMID 22760636]; Ncl1p 2606197 NCL1 30034798 NCL1 Sugiyamaella lignohabitans Ncl1p XP_018737694.1 2604032 R 796027 CDS AWJ20_2843 30034799 2606948..2607724 B 1 NC_031674.1 Essential nucleolar protein required for pre-18S rRNA processing; interacts with Dim1p, an 18S rRNA dimethyltransferase, and also with Nob1p, which is involved in proteasome biogenesis; contains a KH domain; GO_component: GO:0030686 - 90S preribosome [Evidence IDA] [PMID 12150911]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 10923024]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 12502737]; GO_function: GO:0003723 - RNA binding [Evidence IEA,IEA]; GO_function: GO:0051082 - unfolded protein binding [Evidence IDA,IPI] [PMID 12502737]; GO_process: GO:0000447 - endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 12736301]; GO_process: GO:0000472 - endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 12736301]; GO_process: GO:0006461 - protein complex assembly [Evidence IMP,IPI] [PMID 12502737]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; Pno1p 2607724 PNO1 30034799 PNO1 Sugiyamaella lignohabitans Pno1p XP_018737695.1 2606948 D 796027 CDS AWJ20_2844 30034800 complement(2607938..2609224) B 1 NC_031674.1 Component of the Paf1p complex; binds to and modulates the activity of RNA polymerases I and II; required for expression of certain genes, modification of some histones, and telomere maintenance; involved in transcription elongation as demonstrated by the G-less-based run-on (GLRO) assay; protein abundance increases in response to DNA replication stress; human homologue, parafibromin, is a tumour suppressor linked to breast, renal and gastric cancers; GO_component: GO:0016593 - Cdc73/Paf1 complex [Evidence IPI] [PMID 11884586]; GO_component: GO:0016593 - Cdc73/Paf1 complex [Evidence IPI] [PMID 11927560]; GO_component: GO:0016593 - Cdc73/Paf1 complex [Evidence IPI] [PMID 9032243]; GO_component: GO:0005654 - nucleoplasm [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 15643076]; GO_component: GO:0035327 - transcriptionally active chromatin [Evidence IDA] [PMID 11983171]; GO_function: GO:1990269 - RNA polymerase II C-terminal domain phosphoserine binding [Evidence IDA] [PMID 22796944]; GO_function: GO:0000993 - RNA polymerase II core binding [Evidence IPI] [PMID 11884586]; GO_function: GO:0000993 - RNA polymerase II core binding [Evidence IPI] [PMID 9032243]; GO_function: GO:0001076 - RNA polymerase II transcription factor binding transcription factor activity [Evidence IPI] [PMID 11927560]; GO_function: GO:0001089 - TFIIF-class binding transcription factor activity [Evidence IMP,IPI] [PMID 9032243]; GO_function: GO:0003682 - chromatin binding [Evidence IDA] [PMID 11983171]; GO_process: GO:0031124 - mRNA 3'-end processing [Evidence IMP] [PMID 15149594]; GO_process: GO:0045910 - negative regulation of DNA recombination [Evidence IMP] [PMID 9891041]; GO_process: GO:2001255 - positive regulation of histone H3-K36 trimethylation [Evidence IMP] [PMID 17948059]; GO_process: GO:2001165 - positive regulation of phosphorylation of RNA polymerase II C-terminal domain serine 2 residues [Evidence IMP] [PMID 18469135]; GO_process: GO:2001209 - positive regulation of transcription elongation from RNA polymerase I promoter [Evidence IDA] [PMID 20299458]; GO_process: GO:0032968 - positive regulation of transcription elongation from RNA polymerase II promoter [Evidence IMP] [PMID 14710186]; GO_process: GO:0034402 - recruitment of 3'-end processing factors to RNA polymerase II holoenzyme complex [Evidence IMP] [PMID 18469135]; GO_process: GO:2001173 - regulation of histone H2B conserved C-terminal lysine ubiquitination [Evidence IDA] [PMID 19531475]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0090262 - regulation of transcription-coupled nucleotide-excision repair [Evidence IGI] [PMID 21737840]; GO_process: GO:0006362 - transcription elongation from RNA polymerase I promoter [Evidence IMP] [PMID 19164765]; GO_process: GO:0006368 - transcription elongation from RNA polymerase II promoter [Evidence IGI] [PMID 11927560]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Cdc73p 2609224 CDC73 30034800 CDC73 Sugiyamaella lignohabitans Cdc73p XP_018737696.1 2607938 R 796027 CDS AWJ20_2845 30034801 complement(2609823..2610470) B 1 NC_031674.1 Endosomal Rab family GTPase; required for vacuolar protein sorting, endocytosis and multivesicular body (MVB) biogenesis and sorting; required for localization of the CORVET complex to endosomes; involved in autophagy and ionic stress tolerance; similar to Vps21p and Ypt53p; mammalian Rab5 homolog; protein abundance increases in response to DNA replication stress; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA,IEA]; GO_component: GO:0005770 - late endosome [Evidence IMP] [PMID 11872141]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_function: GO:0005525 - GTP binding [Evidence IEA,IEA]; GO_function: GO:0003924 - GTPase activity [Evidence IDA] [PMID 11210571]; GO_function: GO:0003924 - GTPase activity [Evidence IMP] [PMID 8163546]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006895 - Golgi to endosome transport [Evidence IGI,IMP] [PMID 22748138]; GO_process: GO:0006895 - Golgi to endosome transport [Evidence IGI] [PMID 23612966]; GO_process: GO:0006897 - endocytosis [Evidence IMP] [PMID 8163546]; GO_process: GO:0032511 - late endosome to vacuole transport via multivesicular body sorting pathway [Evidence IGI] [PMID 22748138]; GO_process: GO:0036258 - multivesicular body assembly [Evidence IGI] [PMID 22748138]; GO_process: GO:0036010 - protein localization to endosome [Evidence IGI] [PMID 23264632]; GO_process: GO:0006623 - protein targeting to vacuole [Evidence IMP] [PMID 8163546]; GO_process: GO:0015031 - protein transport [Evidence IEA,IEA]; GO_process: GO:0007264 - small GTPase mediated signal transduction [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Rab family GTPase YPT52 2610470 YPT52 30034801 YPT52 Sugiyamaella lignohabitans Rab family GTPase YPT52 XP_018737697.1 2609823 R 796027 CDS AWJ20_2846 30034802 2612894..2615122 B 1 NC_031674.1 uncharacterized protein 2615122 30034802 AWJ20_2846 Sugiyamaella lignohabitans uncharacterized protein XP_018737698.1 2612894 D 796027 CDS AWJ20_2847 30034803 2615225..2616793 B 1 NC_031674.1 Mitochondrial threonyl-tRNA synthetase; aminoacylates both the canonical threonine tRNA tT(UGU)Q1 and the unusual threonine tRNA tT(UAG)Q2 in vitro; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 2999113]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004812 - aminoacyl-tRNA ligase activity [Evidence IEA,IEA]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_function: GO:0004829 - threonine-tRNA ligase activity [Evidence IEA,IEA]; GO_function: GO:0004829 - threonine-tRNA ligase activity [Evidence IDA] [PMID 21321019]; GO_function: GO:0004829 - threonine-tRNA ligase activity [Evidence IMP,ISA] [PMID 2999113]; GO_process: GO:0070159 - mitochondrial threonyl-tRNA aminoacylation [Evidence IDA] [PMID 21321019]; GO_process: GO:0006418 - tRNA aminoacylation for protein translation [Evidence IEA]; GO_process: GO:0006435 - threonyl-tRNA aminoacylation [Evidence IEA]; GO_process: GO:0006412 - translation [Evidence IEA]; threonine--tRNA ligase MST1 2616793 MST1 30034803 MST1 Sugiyamaella lignohabitans threonine--tRNA ligase MST1 XP_018737699.1 2615225 D 796027 CDS AWJ20_2848 30034804 complement(2617063..2618511) B 1 NC_031674.1 protein kinase regulatory subunit ATG17 2618511 ATG17 30034804 ATG17 Sugiyamaella lignohabitans protein kinase regulatory subunit ATG17 XP_018737700.1 2617063 R 796027 CDS AWJ20_2849 30034805 2619905..2622874 B 1 NC_031674.1 Subunit of an alternative replication factor C complex; important for DNA replication and genome integrity; suppresses spontaneous DNA damage; involved in homologous recombination-mediated repair and telomere homeostasis; required for PCNA (Pol30p) unloading during DNA replication; GO_component: GO:0031391 - Elg1 RFC-like complex [Evidence IPI] [PMID 12909721]; GO_component: GO:0005694 - chromosome [Evidence IEA]; GO_component: GO:0000781 - chromosome, telomeric region [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003682 - chromatin binding [Evidence IDA] [PMID 18482875]; GO_process: GO:0006261 - DNA-dependent DNA replication [Evidence IMP] [PMID 12912927]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0000724 - double-strand break repair via homologous recombination [Evidence IMP] [PMID 17170004]; GO_process: GO:0007064 - mitotic sister chromatid cohesion [Evidence IGI,IMP] [PMID 19430531]; GO_process: GO:0045910 - negative regulation of DNA recombination [Evidence NAS] [PMID 11779788]; GO_process: GO:0010526 - negative regulation of transposition, RNA-mediated [Evidence IMP] [PMID 11779788]; GO_process: GO:0000723 - telomere maintenance [Evidence TAS] [PMID 13678589]; Elg1p 2622874 ELG1 30034805 ELG1 Sugiyamaella lignohabitans Elg1p XP_018737701.1 2619905 D 796027 CDS AWJ20_2850 30034807 complement(2623026..2623625) B 1 NC_031674.1 Subunit of the SAGA and SAGA-like transcriptional regulatory complexes; interacts with Spt15p to activate transcription of some RNA polymerase II-dependent genes, also functions to inhibit transcription at some promoters; relocalizes to the cytosol in response to hypoxia; GO_component: GO:0000124 - SAGA complex [Evidence IDA] [PMID 9224714]; GO_component: GO:0000124 - SAGA complex [Evidence IDA] [PMID 9674426]; GO_component: GO:0046695 - SLIK (SAGA-like) complex [Evidence IDA] [PMID 12446794]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 22932476]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22932476]; GO_function: GO:0046982 - protein heterodimerization activity [Evidence IEA]; GO_function: GO:0003712 - transcription cofactor activity [Evidence IDA] [PMID 11485989]; GO_function: GO:0003712 - transcription cofactor activity [Evidence IMP] [PMID 9858534]; GO_process: GO:0016568 - chromatin modification [Evidence IDA] [PMID 9674426]; GO_process: GO:0016573 - histone acetylation [Evidence IDA] [PMID 9674426]; GO_process: GO:0001403 - invasive growth in response to glucose limitation [Evidence IDA] [PMID 12072450]; GO_process: GO:0007124 - pseudohyphal growth [Evidence IDA] [PMID 12072450]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IEA]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IMP] [PMID 12370284]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; transcriptional regulator SPT3 2623625 SPT3 30034807 SPT3 Sugiyamaella lignohabitans transcriptional regulator SPT3 XP_018737702.1 2623026 R 796027 CDS AWJ20_2851 30034808 2624301..2626889 B 1 NC_031674.1 RNA-binding splicing factor 2626889 30034808 AWJ20_2851 Sugiyamaella lignohabitans RNA-binding splicing factor XP_018737703.1 2624301 D 796027 CDS AWJ20_2852 30034809 complement(2627160..2627906) B 1 NC_031674.1 Mitochondrial oxidoreductase; involved in mitochondrial intermembrane space import; component of MIA pathway which mediates import and oxidative folding of substrates including small proteins containing twin cysteine motifs; acts in concert with Erv1p, which oxidizes the cysteine residues of Mia40p to comprise a disulfide relay system that catalyzes import; also mediates folding of Atp23p via a chaperone-like activity; forms a dimer that binds iron-sulfur cluster in vitro; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0031305 - integral component of mitochondrial inner membrane [Evidence IDA] [PMID 15364952]; GO_component: GO:0031305 - integral component of mitochondrial inner membrane [Evidence IDA] [PMID 15620710]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IDA] [PMID 15359280]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14690591]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0051537 - 2 iron, 2 sulfur cluster binding [Evidence IDA] [PMID 23834247]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IMP] [PMID 22990235]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; GO_process: GO:0006457 - protein folding [Evidence IDA] [PMID 22990235]; GO_process: GO:0045041 - protein import into mitochondrial intermembrane space [Evidence IMP] [PMID 15359280]; GO_process: GO:0045041 - protein import into mitochondrial intermembrane space [Evidence IMP] [PMID 15364952]; GO_process: GO:0045041 - protein import into mitochondrial intermembrane space [Evidence IPI] [PMID 15989955]; GO_process: GO:0045041 - protein import into mitochondrial intermembrane space [Evidence IMP] [PMID 17336303]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Mia40p 2627906 MIA40 30034809 MIA40 Sugiyamaella lignohabitans Mia40p XP_018737704.1 2627160 R 796027 CDS AWJ20_2853 30034810 2628848..2629384 B 1 NC_031674.1 Thiamine pyrophosphokinase; phosphorylates thiamine to produce the coenzyme thiamine pyrophosphate (thiamine diphosphate); GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0004788 - thiamine diphosphokinase activity [Evidence IEA,IEA]; GO_function: GO:0004788 - thiamine diphosphokinase activity [Evidence IDA] [PMID 18652651]; GO_function: GO:0004788 - thiamine diphosphokinase activity [Evidence IDA,IMP] [PMID 8394343]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; GO_process: GO:0009229 - thiamine diphosphate biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0009229 - thiamine diphosphate biosynthetic process [Evidence IMP] [PMID 8394343]; GO_process: GO:0009229 - thiamine diphosphate biosynthetic process [Evidence TAS] [PMID 9655908]; thiamine diphosphokinase 2629384 THI80 30034810 THI80 Sugiyamaella lignohabitans thiamine diphosphokinase XP_018737705.1 2628848 D 796027 CDS AWJ20_2855 30034812 complement(2630084..2631268) B 1 NC_031674.1 tRNA splicing endonuclease subunit SEN34 2631268 SEN34 30034812 SEN34 Sugiyamaella lignohabitans tRNA splicing endonuclease subunit SEN34 XP_018737706.1 2630084 R 796027 CDS AWJ20_2856 30034813 complement(2631501..2632130) B 1 NC_031674.1 uncharacterized protein 2632130 30034813 AWJ20_2856 Sugiyamaella lignohabitans uncharacterized protein XP_018737707.1 2631501 R 796027 CDS AWJ20_2857 30034814 complement(2632981..2634078) B 1 NC_031674.1 Ribosomal 60S subunit protein L4A; N-terminally acetylated; homologous to mammalian ribosomal protein L4 and bacterial L4; RPL4A has a paralog, RPL4B, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0022625 - cytosolic large ribosomal subunit [Evidence IDA] [PMID 11983894]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA,IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IC] [PMID 11983894]; GO_process: GO:0002181 - cytoplasmic translation [Evidence IC] [PMID 11983894]; GO_process: GO:0006412 - translation [Evidence IEA]; ribosomal 60S subunit protein L4A 2634078 RPL4A 30034814 RPL4A Sugiyamaella lignohabitans ribosomal 60S subunit protein L4A XP_018737708.1 2632981 R 796027 CDS AWJ20_2858 30034815 2635430..2637511 B 1 NC_031674.1 Glycogen branching enzyme, involved in glycogen accumulation; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm in a punctate pattern; relocalizes from nucleus to cytoplasmic foci upon DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_function: GO:0003844 - 1,4-alpha-glucan branching enzyme activity [Evidence IEA,IEA]; GO_function: GO:0003844 - 1,4-alpha-glucan branching enzyme activity [Evidence IGI,IMP] [PMID 1729600]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0043169 - cation binding [Evidence IEA]; GO_function: GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA]; GO_process: GO:0005975 - carbohydrate metabolic process [Evidence IEA]; GO_process: GO:0005978 - glycogen biosynthetic process [Evidence IEA,IEA,IEA]; GO_process: GO:0005978 - glycogen biosynthetic process [Evidence IMP] [PMID 1729600]; 1,4-alpha-glucan branching enzyme 2637511 GLC3 30034815 GLC3 Sugiyamaella lignohabitans 1,4-alpha-glucan branching enzyme XP_018737709.1 2635430 D 796027 CDS AWJ20_2859 30034816 complement(2637687..2639168) B 1 NC_031674.1 Fumarase; converts fumaric acid to L-malic acid in the TCA cycle; cytosolic and mitochondrial distribution determined by the N-terminal targeting sequence, protein conformation, and status of glyoxylate shunt; phosphorylated in mitochondria; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 11585823]; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA]; GO_component: GO:0005759 - mitochondrial matrix [Evidence IDA] [PMID 11585823]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 11502169]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0045239 - tricarboxylic acid cycle enzyme complex [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0004333 - fumarate hydratase activity [Evidence IEA,IEA]; GO_function: GO:0004333 - fumarate hydratase activity [Evidence IDA] [PMID 3040736]; GO_function: GO:0016829 - lyase activity [Evidence IEA,IEA]; GO_process: GO:0006106 - fumarate metabolic process [Evidence IEA]; GO_process: GO:0006106 - fumarate metabolic process [Evidence IMP] [PMID 1587456]; GO_process: GO:0006099 - tricarboxylic acid cycle [Evidence IEA,IEA,IEA]; GO_process: GO:0006099 - tricarboxylic acid cycle [Evidence IMP] [PMID 1587456]; fumarase FUM1 2639168 FUM1 30034816 FUM1 Sugiyamaella lignohabitans fumarase FUM1 XP_018737710.1 2637687 R 796027 CDS AWJ20_2860 30034818 complement(2639783..2640553) B 1 NC_031674.1 Essential protein involved in rRNA processing and ribosome biogenesis; protein abundance increases in response to DNA replication stress; GO_component: GO:0032545 - CURI complex [Evidence IDA] [PMID 17452446]; GO_component: GO:0034456 - UTP-C complex [Evidence IDA] [PMID 17515605]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0006364 - rRNA processing [Evidence IGI,IMP] [PMID 9271380]; GO_process: GO:0000028 - ribosomal small subunit assembly [Evidence IGI,IMP] [PMID 9271380]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; Rrp7p 2640553 RRP7 30034818 RRP7 Sugiyamaella lignohabitans Rrp7p XP_018737711.1 2639783 R 796027 CDS AWJ20_2861 30034819 2640771..2642318 B 1 NC_031674.1 SET-domain lysine-N-methyltransferase; catalyzes the formation of dimethyllysine residues on the large ribsomal subunit proteins L23a (Rpl23Ap and Rpl23Bp) and L18 (Rps18Ap and Rps18Bp); GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0008168 - methyltransferase activity [Evidence IEA]; GO_function: GO:0016279 - protein-lysine N-methyltransferase activity [Evidence IDA,IMP] [PMID 16096273]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0032259 - methylation [Evidence IEA]; GO_process: GO:0018027 - peptidyl-lysine dimethylation [Evidence IDA,IMP] [PMID 16096273]; Rkm1p 2642318 RKM1 30034819 RKM1 Sugiyamaella lignohabitans Rkm1p XP_018737712.1 2640771 D 796027 CDS AWJ20_2862 30034820 2643145..2643660 B 1 NC_031674.1 N-acetyltransferase (predicted) 2643660 30034820 AWJ20_2862 Sugiyamaella lignohabitans N-acetyltransferase (predicted) XP_018737713.1 2643145 D 796027 CDS AWJ20_2863 30034821 2646215..2648395 B 1 NC_031674.1 Iron-sulfur protein required for synthesis of Wybutosine modified tRNA; Wybutosine is a modified guanosine found at the 3'-position adjacent to the anticodon of phenylalanine tRNA which supports reading frame maintenance by stabilizing codon-anticodon interactions; induction by Yap5p in response to iron provides protection from high iron toxicity; overexpression results in increased cellular iron; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA,IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 14562095]; GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO_function: GO:0010181 - FMN binding [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0051536 - iron-sulfur cluster binding [Evidence IEA,IEA]; GO_function: GO:0016829 - lyase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; GO_process: GO:0008033 - tRNA processing [Evidence IEA]; GO_process: GO:0031591 - wybutosine biosynthetic process [Evidence IMP] [PMID 16162496]; GO_process: GO:0031591 - wybutosine biosynthetic process [Evidence IMP] [PMID 16642040]; GO_process: GO:0031591 - wybutosine biosynthetic process [Evidence IMP] [PMID 17150819]; Tyw1p 2648395 TYW1 30034821 TYW1 Sugiyamaella lignohabitans Tyw1p XP_018737714.1 2646215 D 796027 CDS AWJ20_2864 30034822 2648605..2650059 B 1 NC_031674.1 uncharacterized protein 2650059 30034822 AWJ20_2864 Sugiyamaella lignohabitans uncharacterized protein XP_018737715.1 2648605 D 796027 CDS AWJ20_2865 30034823 2650400..2651764 B 1 NC_031674.1 Mannosyltransferase in the N-linked glycosylation pathway; catalyzes two consecutive steps in the N-linked glycosylation pathway; alg2 mutants exhibit temperature-sensitive growth and abnormal accumulation of the lipid-linked oligosaccharide Man2GlcNAc2-PP-Dol; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IC] [PMID 16878994]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0004378 - GDP-Man:Man1GlcNAc2-PP-Dol alpha-1,3-mannosyltransferase activity [Evidence IEA]; GO_function: GO:0004378 - GDP-Man:Man1GlcNAc2-PP-Dol alpha-1,3-mannosyltransferase activity [Evidence IDA] [PMID 16878994]; GO_function: GO:0033164 - glycolipid 6-alpha-mannosyltransferase activity [Evidence IDA] [PMID 16878994]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA]; GO_process: GO:0009058 - biosynthetic process [Evidence IEA]; GO_process: GO:0097502 - mannosylation [Evidence IEA]; GO_process: GO:0006490 - oligosaccharide-lipid intermediate biosynthetic process [Evidence IDA] [PMID 16878994]; GO_process: GO:0006486 - protein glycosylation [Evidence IEA]; GDP-Man:Man(1)GlcNAc(2)-PP-dolichol alpha-1,3-mannosyltransferase 2651764 ALG2 30034823 ALG2 Sugiyamaella lignohabitans GDP-Man:Man(1)GlcNAc(2)-PP-dolichol alpha-1,3-mannosyltransferase XP_018737716.1 2650400 D 796027 CDS AWJ20_2866 30034824 complement(2651909..2653291) B 1 NC_031674.1 SAGA complex subunit; has a role in anchoring the deubiquitination module into SAGA and SLIK complexes; involved in preinitiation complex assembly at promoters; relocalizes to the cytosol in response to hypoxia; human ortholog ataxin-7 is associated with spinocerebellar ataxia diseases; mutant displays reduced transcription elongation in the G-less-based run-on (GLRO) assay; GO_component: GO:0071819 - DUBm complex [Evidence IDA] [PMID 20395473]; GO_component: GO:0000124 - SAGA complex [Evidence IDA] [PMID 12052880]; GO_component: GO:0000124 - SAGA complex [Evidence IPI] [PMID 15932941]; GO_component: GO:0000124 - SAGA complex [Evidence IDA] [PMID 17090597]; GO_component: GO:0046695 - SLIK (SAGA-like) complex [Evidence IPI] [PMID 15932941]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 22932476]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22932476]; GO_function: GO:0008047 - enzyme activator activity [Evidence IDA] [PMID 18488019]; GO_function: GO:0008047 - enzyme activator activity [Evidence IMP] [PMID 20434206]; GO_function: GO:0004402 - histone acetyltransferase activity [Evidence IMP] [PMID 15932941]; GO_function: GO:0005198 - structural molecule activity [Evidence IGI,IMP] [PMID 15932941]; GO_process: GO:0016568 - chromatin modification [Evidence IMP] [PMID 15932941]; GO_process: GO:0016568 - chromatin modification [Evidence IMP] [PMID 17090597]; GO_process: GO:0016573 - histone acetylation [Evidence IPI] [PMID 12052880]; GO_process: GO:0016573 - histone acetylation [Evidence IMP] [PMID 15932941]; GO_process: GO:0016578 - histone deubiquitination [Evidence IMP] [PMID 19226466]; GO_process: GO:0006406 - mRNA export from nucleus [Evidence IMP] [PMID 18488019]; GO_process: GO:0045899 - positive regulation of RNA polymerase II transcriptional preinitiation complex assembly [Evidence IMP] [PMID 17090597]; GO_process: GO:0006461 - protein complex assembly [Evidence IMP] [PMID 19226466]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Sgf73p 2653291 SGF73 30034824 SGF73 Sugiyamaella lignohabitans Sgf73p XP_018737717.1 2651909 R 796027 CDS AWJ20_2867 30034825 2654524..2655063 B 1 NC_031674.1 Part of evolutionarily-conserved CCR4-NOT regulatory complex; contains single ABC-type ATPase domain but no transmembrane domain; interacts with several subunits of Mediator; GO_component: GO:0030014 - CCR4-NOT complex [Evidence IDA] [PMID 11113136]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016887 - ATPase activity [Evidence IEA]; GO_function: GO:0016887 - ATPase activity [Evidence ISS] [PMID 10581358]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence IMP,IPI] [PMID 11113136]; putative ATP-binding cassette family ATPase CAF16 2655063 CAF16 30034825 CAF16 Sugiyamaella lignohabitans putative ATP-binding cassette family ATPase CAF16 XP_018737718.1 2654524 D 796027 CDS AWJ20_2868 30034826 2656315..2657508 B 1 NC_031674.1 C-5 sterol desaturase; glycoprotein that catalyzes the introduction of a C-5(6) double bond into episterol, a precursor in ergosterol biosynthesis; mutants are viable, but cannot grow on non-fermentable carbon sources; substrate of the HRD ubiquitin ligase; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 14562095]; GO_component: GO:0005788 - endoplasmic reticulum lumen [Evidence IDA] [PMID 21737688]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0000248 - C-5 sterol desaturase activity [Evidence IDA] [PMID 34600]; GO_function: GO:0005506 - iron ion binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_process: GO:0006696 - ergosterol biosynthetic process [Evidence IMP] [PMID 1864507]; GO_process: GO:0006633 - fatty acid biosynthetic process [Evidence IEA]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0006694 - steroid biosynthetic process [Evidence IEA]; GO_process: GO:0008202 - steroid metabolic process [Evidence IEA]; GO_process: GO:0016126 - sterol biosynthetic process [Evidence IEA,IEA]; C-5 sterol desaturase 2657508 ERG3 30034826 ERG3 Sugiyamaella lignohabitans C-5 sterol desaturase XP_018737719.1 2656315 D 796027 CDS AWJ20_2869 30034827 complement(2658585..2659685) B 1 NC_031674.1 uncharacterized protein 2659685 30034827 AWJ20_2869 Sugiyamaella lignohabitans uncharacterized protein XP_018737720.1 2658585 R 796027 CDS AWJ20_2870 30034829 complement(2660669..2664526) B 1 NC_031674.1 Ubiquitin-protein ligase (E3); interacts with Rpt4p and Rpt6p, two subunits of the 19S particle of the 26S proteasome; cytoplasmic E3 involved in the degradation of ubiquitin fusion proteins; relative distribution to the nucleus increases upon DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IPI] [PMID 10688918]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence IBA,IEA]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence TAS] [PMID 8982460]; GO_process: GO:0010994 - free ubiquitin chain polymerization [Evidence IMP] [PMID 22497224]; GO_process: GO:0006513 - protein monoubiquitination [Evidence TAS] [PMID 8982460]; GO_process: GO:0000209 - protein polyubiquitination [Evidence TAS] [PMID 8982460]; GO_process: GO:0042787 - protein ubiquitination involved in ubiquitin-dependent protein catabolic process [Evidence IBA]; putative ubiquitin-protein ligase UFD4 2664526 UFD4 30034829 UFD4 Sugiyamaella lignohabitans putative ubiquitin-protein ligase UFD4 XP_018737721.1 2660669 R 796027 CDS AWJ20_2871 30034830 complement(2664827..2665891) B 1 NC_031674.1 Ubiquitin-protein ligase (E3); interacts with Rpt4p and Rpt6p, two subunits of the 19S particle of the 26S proteasome; cytoplasmic E3 involved in the degradation of ubiquitin fusion proteins; relative distribution to the nucleus increases upon DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IPI] [PMID 10688918]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence IBA,IEA]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence TAS] [PMID 8982460]; GO_process: GO:0010994 - free ubiquitin chain polymerization [Evidence IMP] [PMID 22497224]; GO_process: GO:0006513 - protein monoubiquitination [Evidence TAS] [PMID 8982460]; GO_process: GO:0000209 - protein polyubiquitination [Evidence TAS] [PMID 8982460]; GO_process: GO:0042787 - protein ubiquitination involved in ubiquitin-dependent protein catabolic process [Evidence IBA]; putative ubiquitin-protein ligase UFD4 2665891 UFD4 30034830 UFD4 Sugiyamaella lignohabitans putative ubiquitin-protein ligase UFD4 XP_018737722.1 2664827 R 796027 CDS AWJ20_2872 30034831 complement(2668224..2669114) B 1 NC_031674.1 Ty1 enhancer activator involved in Ty enhancer-mediated transcription; required for full levels of Ty enhancer-mediated transcription; C6 zinc cluster DNA-binding protein; GO_component: GO:0051285 - cell cortex of cell tip [Evidence IDA] [PMID 23673619]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IGI,IPI] [PMID 8524314]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0003677 - DNA binding [Evidence IDA] [PMID 8524314]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19111667]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19158363]; GO_function: GO:0000981 - sequence-specific DNA binding RNA polymerase II transcription factor activity [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence IEA]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA,IEA]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA,IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IGI,IPI] [PMID 8524314]; Tea1p 2669114 TEA1 30034831 TEA1 Sugiyamaella lignohabitans Tea1p XP_018737723.1 2668224 R 796027 CDS AWJ20_2873 30034832 2670151..2670933 B 1 NC_031674.1 Plasma membrane riboflavin transporter; facilitates the uptake of vitamin B2; required for FAD-dependent processes; sequence similarity to mammalian monocarboxylate permeases, however mutants are not deficient in monocarboxylate transport; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 16204239]; GO_function: GO:0008028 - monocarboxylic acid transmembrane transporter activity [Evidence IGI,IMP] [PMID 11536335]; GO_function: GO:0032217 - riboflavin transporter activity [Evidence IGI] [PMID 16204239]; GO_process: GO:0032218 - riboflavin transport [Evidence IGI] [PMID 16204239]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Mch5p 2670933 MCH5 30034832 MCH5 Sugiyamaella lignohabitans Mch5p XP_018737724.1 2670151 D 796027 CDS AWJ20_2874 30034833 2671452..2672654 B 1 NC_031674.1 protein kinase RIO2 2672654 RIO2 30034833 RIO2 Sugiyamaella lignohabitans protein kinase RIO2 XP_018737725.1 2671452 D 796027 CDS AWJ20_2875 30034834 2672930..2673322 B 1 NC_031674.1 uncharacterized protein 2673322 30034834 AWJ20_2875 Sugiyamaella lignohabitans uncharacterized protein XP_018737726.1 2672930 D 796027 CDS AWJ20_2876 30034835 complement(2674300..2674806) B 1 NC_031674.1 uncharacterized protein 2674806 30034835 AWJ20_2876 Sugiyamaella lignohabitans uncharacterized protein XP_018737727.1 2674300 R 796027 CDS AWJ20_2877 30034836 2676271..2678898 B 1 NC_031674.1 Na+/H+ antiporter; involved in sodium and potassium efflux through the plasma membrane; required for alkali cation tolerance at acidic pH; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 17176761]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA,IEA]; GO_component: GO:0045121 - membrane raft [Evidence IDA] [PMID 19254924]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 15950597]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 9802016]; GO_function: GO:0015297 - antiporter activity [Evidence IEA]; GO_function: GO:0015491 - cation:cation antiporter activity [Evidence ISS] [PMID 8654575]; GO_function: GO:0015491 - cation:cation antiporter activity [Evidence IMP] [PMID 9802016]; GO_function: GO:0015385 - sodium:proton antiporter activity [Evidence IEA]; GO_function: GO:0015385 - sodium:proton antiporter activity [Evidence IDA] [PMID 15950597]; GO_function: GO:0015299 - solute:proton antiporter activity [Evidence IEA]; GO_process: GO:0006812 - cation transport [Evidence IEA]; GO_process: GO:0030004 - cellular monovalent inorganic cation homeostasis [Evidence IMP] [PMID 9802016]; GO_process: GO:0030007 - cellular potassium ion homeostasis [Evidence IMP] [PMID 16402204]; GO_process: GO:1902600 - hydrogen ion transmembrane transport [Evidence IEA]; GO_process: GO:0006811 - ion transport [Evidence IEA]; GO_process: GO:0006970 - response to osmotic stress [Evidence IMP] [PMID 16402204]; GO_process: GO:0035725 - sodium ion transmembrane transport [Evidence IEA]; GO_process: GO:0006814 - sodium ion transport [Evidence IEA,IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Nha1p 2678898 NHA1 30034836 NHA1 Sugiyamaella lignohabitans Nha1p XP_018737728.1 2676271 D 796027 CDS AWJ20_2878 30034837 complement(2679126..2681966) B 1 NC_031674.1 Nucleolar protein; specifically associated with the U3 snoRNA, part of the large ribonucleoprotein complex known as the small subunit (SSU) processome, required for 18S rRNA biogenesis, part of the active pre-rRNA processing complex; GO_component: GO:0030686 - 90S preribosome [Evidence IDA] [PMID 12150911]; GO_component: GO:0034388 - Pwp2p-containing subcomplex of 90S preribosome [Evidence IDA] [PMID 15231838]; GO_component: GO:0034388 - Pwp2p-containing subcomplex of 90S preribosome [Evidence IDA] [PMID 17515605]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 12068309]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0032040 - small-subunit processome [Evidence IDA] [PMID 12068309]; GO_function: GO:0030515 - snoRNA binding [Evidence IPI] [PMID 12068309]; GO_process: GO:0000480 - endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 15489292]; GO_process: GO:0000447 - endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 15489292]; GO_process: GO:0000472 - endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 15489292]; GO_process: GO:0000462 - maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 12068309]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; Dip2p 2681966 DIP2 30034837 DIP2 Sugiyamaella lignohabitans Dip2p XP_018737729.1 2679126 R 796027 CDS AWJ20_2879 30034838 2680399..2680779 B 1 NC_031674.1 L3118 2680779 30034838 AWJ20_2879 Sugiyamaella lignohabitans L3118 XP_018737730.1 2680399 D 796027 CDS AWJ20_2880 30034840 complement(2684641..2685741) B 1 NC_031674.1 Subunit of the ARP2/3 complex; ARP2/3 is required for the motility and integrity of cortical actin patches; GO_component: GO:0005885 - Arp2/3 protein complex [Evidence IDA] [PMID 10377407]; GO_component: GO:0005885 - Arp2/3 protein complex [Evidence IDA] [PMID 15485833]; GO_component: GO:0030479 - actin cortical patch [Evidence IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA,IEA]; GO_function: GO:0003779 - actin binding [Evidence IEA,IEA]; GO_function: GO:0043130 - ubiquitin binding [Evidence IDA] [PMID 21070969]; GO_process: GO:0007015 - actin filament organization [Evidence IMP] [PMID 10377407]; GO_process: GO:0045010 - actin nucleation [Evidence IDA] [PMID 15485833]; GO_process: GO:0030833 - regulation of actin filament polymerization [Evidence IEA]; Arc40p 2685741 ARC40 30034840 ARC40 Sugiyamaella lignohabitans Arc40p XP_018737731.1 2684641 R 796027 CDS AWJ20_2881 30034841 2686676..2688124 B 1 NC_031674.1 Adenylosuccinate lyase; catalyzes two steps in the 'de novo' purine nucleotide biosynthetic pathway; expression is repressed by adenine and activated by Bas1p and Pho2p; mutations in human ortholog ADSL cause adenylosuccinase deficiency; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0070626 - (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate AMP-lyase (fumarate-forming) activity [Evidence IEA]; GO_function: GO:0004018 - N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity [Evidence IEA,IEA]; GO_function: GO:0004018 - N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity [Evidence IMP] [PMID 5807803]; GO_function: GO:0004018 - N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity [Evidence IMP] [PMID 7896125]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016829 - lyase activity [Evidence IEA]; GO_process: GO:0044208 - 'de novo' AMP biosynthetic process [Evidence IEA]; GO_process: GO:0006189 - 'de novo' IMP biosynthetic process [Evidence IEA]; GO_process: GO:0006189 - 'de novo' IMP biosynthetic process [Evidence IMP] [PMID 5807803]; GO_process: GO:0006189 - 'de novo' IMP biosynthetic process [Evidence IGI] [PMID 7896125]; GO_process: GO:0006164 - purine nucleotide biosynthetic process [Evidence IEA]; GO_process: GO:0006164 - purine nucleotide biosynthetic process [Evidence IMP] [PMID 5807803]; GO_process: GO:0009152 - purine ribonucleotide biosynthetic process [Evidence IEA]; adenylosuccinase ADE13 2688124 ADE13 30034841 ADE13 Sugiyamaella lignohabitans adenylosuccinase ADE13 XP_018737732.1 2686676 D 796027 CDS AWJ20_2882 30034842 complement(2688346..2689284) B 1 NC_031674.1 Subunit of the RNA polymerase II mediator complex; associates with core polymerase subunits to form the RNA polymerase II holoenzyme; essential for transcriptional regulation; GO_component: GO:0070847 - core mediator complex [Evidence IDA] [PMID 9891034]; GO_component: GO:0016592 - mediator complex [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0001104 - RNA polymerase II transcription cofactor activity [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0000122 - negative regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 16452140]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 16452140]; GO_process: GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence IEA]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Med7p 2689284 MED7 30034842 MED7 Sugiyamaella lignohabitans Med7p XP_018737733.1 2688346 R 796027 CDS AWJ20_2883 30034843 complement(2692676..2693362) B 1 NC_031674.1 uncharacterized protein 2693362 30034843 AWJ20_2883 Sugiyamaella lignohabitans uncharacterized protein XP_018737734.1 2692676 R 796027 CDS AWJ20_2884 30034844 2700160..2701137 B 1 NC_031674.1 Essential component of the Arp2/3 complex; Arp2/3 is a highly conserved actin nucleation center required for the motility and integrity of actin patches; involved in endocytosis and membrane growth and polarity; GO_component: GO:0005885 - Arp2/3 protein complex [Evidence IEA]; GO_component: GO:0005885 - Arp2/3 protein complex [Evidence IDA] [PMID 10377407]; GO_component: GO:0030479 - actin cortical patch [Evidence IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 16622836]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0005524 - ATP binding [Evidence IDA,IMP] [PMID 15657399]; GO_function: GO:0003779 - actin binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0034314 - Arp2/3 complex-mediated actin nucleation [Evidence IEA]; GO_process: GO:0034314 - Arp2/3 complex-mediated actin nucleation [Evidence IMP] [PMID 16862144]; GO_process: GO:0007015 - actin filament organization [Evidence IMP] [PMID 10377407]; GO_process: GO:0000001 - mitochondrion inheritance [Evidence TAS] [PMID 11248049]; GO_process: GO:0030833 - regulation of actin filament polymerization [Evidence IEA]; actin-related protein 3 2701137 ARP3 30034844 ARP3 Sugiyamaella lignohabitans actin-related protein 3 XP_018737735.1 2700160 D 796027 CDS AWJ20_2885 30034845 complement(2701356..2701838) B 1 NC_031674.1 Mitochondrial ribosomal protein of the large subunit; conserved in metazoa, with similarity to human mitochondrial ribosomal protein MRPL49; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0005762 - mitochondrial large ribosomal subunit [Evidence IPI] [PMID 12392552]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA,IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IPI] [PMID 12392552]; GO_process: GO:0032543 - mitochondrial translation [Evidence IC] [PMID 12392552]; GO_process: GO:0006412 - translation [Evidence IEA]; mitochondrial 54S ribosomal protein IMG2 2701838 IMG2 30034845 IMG2 Sugiyamaella lignohabitans mitochondrial 54S ribosomal protein IMG2 XP_018737736.1 2701356 R 796027 CDS AWJ20_2886 30034846 2703375..2704814 B 1 NC_031674.1 Dihydrosphingosine phosphate lyase; regulates intracellular levels of sphingolipid long-chain base phosphates (LCBPs), degrades phosphorylated long chain bases, prefers C16 dihydrosphingosine-l-phosphate as a substrate; GO_component: GO:0032541 - cortical endoplasmic reticulum [Evidence IDA] [PMID 18487605]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 14562095]; GO_component: GO:0097038 - perinuclear endoplasmic reticulum [Evidence IDA] [PMID 18487605]; GO_function: GO:0016831 - carboxy-lyase activity [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016829 - lyase activity [Evidence IEA]; GO_function: GO:0030170 - pyridoxal phosphate binding [Evidence IEA]; GO_function: GO:0008117 - sphinganine-1-phosphate aldolase activity [Evidence IEA]; GO_function: GO:0008117 - sphinganine-1-phosphate aldolase activity [Evidence IDA] [PMID 9334171]; GO_process: GO:0019722 - calcium-mediated signaling [Evidence IMP] [PMID 11278643]; GO_process: GO:0019752 - carboxylic acid metabolic process [Evidence IEA]; GO_process: GO:0009267 - cellular response to starvation [Evidence IMP] [PMID 10329480]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0006665 - sphingolipid metabolic process [Evidence IEA,IEA]; GO_process: GO:0006665 - sphingolipid metabolic process [Evidence IGI,IMP] [PMID 9334171]; sphinganine-1-phosphate aldolase DPL1 2704814 DPL1 30034846 DPL1 Sugiyamaella lignohabitans sphinganine-1-phosphate aldolase DPL1 XP_018737737.1 2703375 D 796027 CDS AWJ20_2887 30034847 2705699..2707375 B 1 NC_031674.1 uncharacterized protein 2707375 30034847 AWJ20_2887 Sugiyamaella lignohabitans uncharacterized protein XP_018737738.1 2705699 D 796027 CDS AWJ20_2888 30034848 2709688..2712066 B 1 NC_031674.1 hypothetical protein; potential Cdc28p substrate; overproduction confers resistance to methylmercury; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0071406 - cellular response to methylmercury [Evidence IGI,IMP] [PMID 15796894]; Bop3p 2712066 BOP3 30034848 BOP3 Sugiyamaella lignohabitans Bop3p XP_018737739.1 2709688 D 796027 CDS AWJ20_2889 30034849 complement(2712230..2713363) B 1 NC_031674.1 Protein with sequence similarity to iron/copper reductases; involved in iron homeostasis; deletion mutant has iron deficiency/accumulation growth defects; expression increased in the absence of copper-responsive transcription factor Mac1p; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 19001347]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0016020 - membrane [Evidence ISS] [PMID 10341420]; GO_function: GO:0000293 - ferric-chelate reductase activity [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0016722 - oxidoreductase activity, oxidizing metal ions [Evidence ISS] [PMID 10341420]; GO_function: GO:0016722 - oxidoreductase activity, oxidizing metal ions [Evidence IMP] [PMID 14534306]; GO_process: GO:0006875 - cellular metal ion homeostasis [Evidence IMP] [PMID 14534306]; GO_process: GO:0006811 - ion transport [Evidence IEA]; GO_process: GO:0055072 - iron ion homeostasis [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; Fre8p 2713363 FRE8 30034849 FRE8 Sugiyamaella lignohabitans Fre8p XP_018737740.1 2712230 R 796027 CDS AWJ20_2890 30034851 2717483..2718058 B 1 NC_031674.1 Inosine 5'-monophosphate (IMP)-specific 5'-nucleotidase; catalyzes the breakdown of IMP to inosine; responsible for production of nicotinamide riboside and nicotinic acid riboside; expression positively regulated by nicotinic acid and glucose availability; does not show similarity to known 5'-nucleotidases from other organisms; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0050483 - IMP 5'-nucleotidase activity [Evidence IDA] [PMID 12735798]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0000287 - magnesium ion binding [Evidence IEA]; GO_function: GO:0016791 - phosphatase activity [Evidence IEA]; GO_process: GO:0016311 - dephosphorylation [Evidence IEA]; GO_process: GO:0006190 - inosine salvage [Evidence IMP] [PMID 12735798]; GO_process: GO:0071590 - nicotinamide riboside biosynthetic process [Evidence IGI,IMP] [PMID 19846558]; GO_process: GO:0071592 - nicotinic acid riboside biosynthetic process [Evidence IGI,IMP] [PMID 19846558]; GO_process: GO:0009117 - nucleotide metabolic process [Evidence IEA,IEA]; IMP 5'-nucleotidase 2718058 ISN1 30034851 ISN1 Sugiyamaella lignohabitans IMP 5'-nucleotidase XP_018737741.1 2717483 D 796027 CDS AWJ20_2891 30034852 complement(2718207..2719151) B 1 NC_031674.1 Replication fork associated factor; required for stable replication fork pausing; component of the DNA replication checkpoint pathway; required for accurate chromosome segregation during meiosis; forms nuclear foci upon DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_component: GO:0031298 - replication fork protection complex [Evidence IDA] [PMID 16531994]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006281 - DNA repair [Evidence IEA]; GO_process: GO:0006281 - DNA repair [Evidence IGI,IMP] [PMID 16219777]; GO_process: GO:0000076 - DNA replication checkpoint [Evidence IGI] [PMID 14764870]; GO_process: GO:0007049 - cell cycle [Evidence IEA,IEA]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA,IEA]; GO_process: GO:0034087 - establishment of mitotic sister chromatid cohesion [Evidence IGI,IMP] [PMID 19730685]; GO_process: GO:0043570 - maintenance of DNA repeat elements [Evidence IMP] [PMID 18321795]; GO_process: GO:0045132 - meiotic chromosome segregation [Evidence IMP] [PMID 11470404]; GO_process: GO:0007126 - meiotic nuclear division [Evidence IEA]; GO_process: GO:0007064 - mitotic sister chromatid cohesion [Evidence IGI,IMP] [PMID 14742714]; GO_process: GO:0007064 - mitotic sister chromatid cohesion [Evidence IGI,IMP] [PMID 17483413]; GO_process: GO:0008156 - negative regulation of DNA replication [Evidence IEA]; GO_process: GO:0043111 - replication fork arrest [Evidence IMP] [PMID 16103218]; GO_process: GO:0043111 - replication fork arrest [Evidence IMP] [PMID 16418273]; GO_process: GO:0048478 - replication fork protection [Evidence IEA]; GO_process: GO:0048478 - replication fork protection [Evidence IMP] [PMID 16418273]; Csm3p 2719151 CSM3 30034852 CSM3 Sugiyamaella lignohabitans Csm3p XP_018737742.1 2718207 R 796027 CDS AWJ20_2892 30034853 2719378..2720622 B 1 NC_031674.1 Protein with carboxyl methyl esterase activity; may have a role in demethylation of the phosphoprotein phosphatase catalytic subunit; also identified as a small subunit mitochondrial ribosomal protein; GO_component: GO:0005763 - mitochondrial small ribosomal subunit [Evidence IDA] [PMID 9151978]; GO_function: GO:0052689 - carboxylic ester hydrolase activity [Evidence IEA]; GO_function: GO:0052689 - carboxylic ester hydrolase activity [Evidence IMP] [PMID 11060018]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IDA] [PMID 9151978]; GO_process: GO:0006464 - cellular protein modification process [Evidence IGI] [PMID 11060018]; GO_process: GO:0032543 - mitochondrial translation [Evidence IC] [PMID 9151978]; GO_process: GO:0006482 - protein demethylation [Evidence IEA]; carboxylesterase-mitochondrial 37S ribosomal protein YmS2 2720622 PPE1 30034853 PPE1 Sugiyamaella lignohabitans carboxylesterase-mitochondrial 37S ribosomal protein YmS2 XP_018737743.1 2719378 D 796027 CDS AWJ20_2893 30034854 complement(2720866..2723028) B 1 NC_031674.1 Glutamine-dependent NAD(+) synthetase; essential for the formation of NAD(+) from nicotinic acid adenine dinucleotide; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 12898714]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 12898714]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0003952 - NAD+ synthase (glutamine-hydrolyzing) activity [Evidence IEA,IEA]; GO_function: GO:0003952 - NAD+ synthase (glutamine-hydrolyzing) activity [Evidence ISS] [PMID 11380987]; GO_function: GO:0003952 - NAD+ synthase (glutamine-hydrolyzing) activity [Evidence IDA,IMP] [PMID 12771147]; GO_function: GO:0003952 - NAD+ synthase (glutamine-hydrolyzing) activity [Evidence IDA,IMP] [PMID 12898714]; GO_function: GO:0004359 - glutaminase activity [Evidence IDA,IMP] [PMID 12771147]; GO_function: GO:0016810 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds [Evidence IEA]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0009435 - NAD biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0009435 - NAD biosynthetic process [Evidence IDA,IMP] [PMID 12771147]; GO_process: GO:0009435 - NAD biosynthetic process [Evidence IDA,IMP] [PMID 12898714]; GO_process: GO:0006807 - nitrogen compound metabolic process [Evidence IEA]; glutamine-dependent NAD(+) synthetase 2723028 QNS1 30034854 QNS1 Sugiyamaella lignohabitans glutamine-dependent NAD(+) synthetase XP_018737744.1 2720866 R 796027 CDS AWJ20_2894 30034855 2723690..2724901 B 1 NC_031674.1 Gamma-glutamyl kinase; catalyzes the first step in proline biosynthesis; PRO1 has a paralog, YHR033W, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0004349 - glutamate 5-kinase activity [Evidence IEA,IEA]; GO_function: GO:0004349 - glutamate 5-kinase activity [Evidence IDA] [PMID 12513997]; GO_function: GO:0004349 - glutamate 5-kinase activity [Evidence ISS] [PMID 1350780]; GO_function: GO:0004349 - glutamate 5-kinase activity [Evidence IGI,IMP] [PMID 2824433]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0055129 - L-proline biosynthetic process [Evidence IEA]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; GO_process: GO:0006561 - proline biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0006561 - proline biosynthetic process [Evidence IDA] [PMID 12513997]; glutamate 5-kinase 2724901 PRO1 30034855 PRO1 Sugiyamaella lignohabitans glutamate 5-kinase XP_018737745.1 2723690 D 796027 CDS AWJ20_2895 30034856 complement(2725081..2726298) B 1 NC_031674.1 Protein required for uridine thiolation of Lys(UUU) and Glu(UUC) tRNAs; required for the thiolation of uridine at the wobble position of Lys(UUU) and Glu(UUC) tRNAs; has a role in urmylation and in invasive and pseudohyphal growth; inhibits replication of Brome mosaic virus in S. cerevisiae; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 18664566]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0016779 - nucleotidyltransferase activity [Evidence IEA]; GO_function: GO:0000049 - tRNA binding [Evidence IEA]; GO_process: GO:0001403 - invasive growth in response to glucose limitation [Evidence IMP] [PMID 14551258]; GO_process: GO:0032447 - protein urmylation [Evidence IEA]; GO_process: GO:0032447 - protein urmylation [Evidence IMP] [PMID 14551258]; GO_process: GO:0007124 - pseudohyphal growth [Evidence IMP] [PMID 14551258]; GO_process: GO:0008033 - tRNA processing [Evidence IEA]; GO_process: GO:0034227 - tRNA thio-modification [Evidence IEA,IEA]; GO_process: GO:0002143 - tRNA wobble position uridine thiolation [Evidence IMP] [PMID 17018299]; GO_process: GO:0002143 - tRNA wobble position uridine thiolation [Evidence IMP] [PMID 18664566]; GO_process: GO:0002143 - tRNA wobble position uridine thiolation [Evidence IMP] [PMID 18755837]; GO_process: GO:0002143 - tRNA wobble position uridine thiolation [Evidence IMP] [PMID 19145231]; GO_process: GO:0002143 - tRNA wobble position uridine thiolation [Evidence IMP] [PMID 19151091]; GO_process: GO:0002098 - tRNA wobble uridine modification [Evidence IEA,IEA]; Ncs2p 2726298 NCS2 30034856 NCS2 Sugiyamaella lignohabitans Ncs2p XP_018737746.1 2725081 R 796027 CDS AWJ20_2896 30034857 complement(2726546..2727511) B 1 NC_031674.1 Component of the conserved R2TP complex (Rvb1-Rvb2-Tah1-Pih1); R2TP complex interacts with Hsp90 (Hsp82p and Hsc82p) to mediate assembly large protein complexes such as box C/D snoRNPs and RNA polymerase II; GO_component: GO:0097255 - R2TP complex [Evidence IDA] [PMID 15766533]; GO_component: GO:0097255 - R2TP complex [Evidence IPI] [PMID 18268103]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005732 - small nucleolar ribonucleoprotein complex [Evidence IPI] [PMID 15670595]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008380 - RNA splicing [Evidence IEA]; GO_process: GO:0000492 - box C/D snoRNP assembly [Evidence IMP] [PMID 18268103]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0006457 - protein folding [Evidence IGI,IMP,IPI] [PMID 15766533]; GO_process: GO:0006364 - rRNA processing [Evidence IGI,IMP,IPI] [PMID 15670595]; GO_process: GO:0008361 - regulation of cell size [Evidence IMP] [PMID 12089449]; Pih1p 2727511 PIH1 30034857 PIH1 Sugiyamaella lignohabitans Pih1p XP_018737747.1 2726546 R 796027 CDS AWJ20_2897 30034858 2728125..2728577 B 1 NC_031674.1 uncharacterized protein 2728577 30034858 AWJ20_2897 Sugiyamaella lignohabitans uncharacterized protein XP_018737748.1 2728125 D 796027 CDS AWJ20_2898 30034859 complement(2728639..2730582) B 1 NC_031674.1 Cytoplasmic peptidyl-prolyl cis-trans isomerase (cyclophilin); catalyzes the cis-trans isomerization of peptide bonds N-terminal to proline residues; binds the drug cyclosporin A; N-terminally propionylated in vivo; protein abundance increases in response to DNA replication stress; GO_component: GO:0034967 - Set3 complex [Evidence IDA] [PMID 11711434]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0000118 - histone deacetylase complex [Evidence IPI] [PMID 15643056]; GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IEA]; GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IDA] [PMID 22984289]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 15643056]; GO_function: GO:0016018 - cyclosporin A binding [Evidence IMP] [PMID 7515500]; GO_function: GO:0016853 - isomerase activity [Evidence IEA]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_function: GO:0042277 - peptide binding [Evidence IEA]; GO_function: GO:0003755 - peptidyl-prolyl cis-trans isomerase activity [Evidence IEA,IEA,IEA]; GO_function: GO:0003755 - peptidyl-prolyl cis-trans isomerase activity [Evidence IDA] [PMID 2687115]; GO_process: GO:0030437 - ascospore formation [Evidence IMP] [PMID 15643056]; GO_process: GO:0044267 - cellular protein metabolic process [Evidence IMP] [PMID 11641409]; GO_process: GO:0044267 - cellular protein metabolic process [Evidence IMP] [PMID 12242280]; GO_process: GO:0016575 - histone deacetylation [Evidence IDA] [PMID 11711434]; GO_process: GO:0045836 - positive regulation of meiosis [Evidence IGI,IMP] [PMID 15643056]; GO_process: GO:0006457 - protein folding [Evidence IEA,IEA]; GO_process: GO:0000413 - protein peptidyl-prolyl isomerization [Evidence IEA,IEA,IEA]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; peptidylprolyl isomerase CPR1 2730582 CPR1 30034859 CPR1 Sugiyamaella lignohabitans peptidylprolyl isomerase CPR1 XP_018737749.1 2728639 R 796027 CDS AWJ20_2899 30034860 2731402..2732190 B 1 NC_031674.1 uncharacterized protein 2732190 30034860 AWJ20_2899 Sugiyamaella lignohabitans uncharacterized protein XP_018737750.1 2731402 D 796027 CDS AWJ20_2900 30034863 complement(2732269..2734554) B 1 NC_031674.1 serine/threonine protein kinase TOS3 2734554 TOS3 30034863 TOS3 Sugiyamaella lignohabitans serine/threonine protein kinase TOS3 XP_018737751.1 2732269 R 796027 CDS AWJ20_2901 30034864 complement(2735817..2736824) B 1 NC_031674.1 Mitochondrial malate dehydrogenase; catalyzes interconversion of malate and oxaloacetate; involved in the tricarboxylic acid (TCA) cycle; phosphorylated; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA]; GO_component: GO:0005759 - mitochondrial matrix [Evidence IDA] [PMID 9774331]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IMP] [PMID 10777592]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 11502169]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IPI] [PMID 16962558]; GO_function: GO:0030060 - L-malate dehydrogenase activity [Evidence IEA,IEA]; GO_function: GO:0030060 - L-malate dehydrogenase activity [Evidence IMP] [PMID 10777592]; GO_function: GO:0030060 - L-malate dehydrogenase activity [Evidence IDA] [PMID 1898005]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 21124907]; GO_function: GO:0016615 - malate dehydrogenase activity [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor [Evidence IEA]; GO_process: GO:0009060 - aerobic respiration [Evidence IMP] [PMID 3312168]; GO_process: GO:0005975 - carbohydrate metabolic process [Evidence IEA]; GO_process: GO:0044262 - cellular carbohydrate metabolic process [Evidence IEA]; GO_process: GO:0001300 - chronological cell aging [Evidence IMP] [PMID 18381895]; GO_process: GO:0006108 - malate metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0001302 - replicative cell aging [Evidence IMP] [PMID 18381895]; GO_process: GO:0006099 - tricarboxylic acid cycle [Evidence IEA]; GO_process: GO:0006099 - tricarboxylic acid cycle [Evidence IMP] [PMID 3312168]; malate dehydrogenase MDH1 2736824 MDH1 30034864 MDH1 Sugiyamaella lignohabitans malate dehydrogenase MDH1 XP_018737752.1 2735817 R 796027 CDS AWJ20_2902 30034865 2736442..2736687 B 1 NC_031674.1 uncharacterized protein 2736687 30034865 AWJ20_2902 Sugiyamaella lignohabitans uncharacterized protein XP_018737753.1 2736442 D 796027 CDS AWJ20_2903 30034866 complement(2740707..2742203) B 1 NC_031674.1 uncharacterized protein 2742203 30034866 AWJ20_2903 Sugiyamaella lignohabitans uncharacterized protein XP_018737754.1 2740707 R 796027 CDS AWJ20_2904 30034867 complement(2742982..2744490) B 1 NC_031674.1 uncharacterized protein 2744490 30034867 AWJ20_2904 Sugiyamaella lignohabitans uncharacterized protein XP_018737755.1 2742982 R 796027 CDS AWJ20_2905 30034868 complement(2744911..2747919) B 1 NC_031674.1 Cu(+2)-transporting P-type ATPase; required for export of copper from the cytosol into an extracytosolic compartment; has similarity to human proteins involved in Menkes and Wilsons diseases; protein abundance increases in response to DNA replication stress; affects TBSV model (+)RNA virus replication by regulating copper metabolism; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0012510 - trans-Golgi network transport vesicle membrane [Evidence IDA] [PMID 9325307]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0019829 - cation-transporting ATPase activity [Evidence IEA]; GO_function: GO:0019829 - cation-transporting ATPase activity [Evidence IDA] [PMID 15078884]; GO_function: GO:0019829 - cation-transporting ATPase activity [Evidence IMP] [PMID 7708696]; GO_function: GO:0005507 - copper ion binding [Evidence IEA]; GO_function: GO:0005507 - copper ion binding [Evidence IDA] [PMID 17961510]; GO_function: GO:0043682 - copper-transporting ATPase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA,IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_process: GO:0006812 - cation transport [Evidence IEA]; GO_process: GO:0006879 - cellular iron ion homeostasis [Evidence IMP] [PMID 7708696]; GO_process: GO:0060003 - copper ion export [Evidence IMP] [PMID 7708696]; GO_process: GO:0006825 - copper ion transport [Evidence IEA,IEA]; GO_process: GO:0006811 - ion transport [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0030001 - metal ion transport [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IMP] [PMID 7708696]; GO_process: GO:0006810 - transport [Evidence IEA]; Cu(2+)-transporting P-type ATPase CCC2 2747919 CCC2 30034868 CCC2 Sugiyamaella lignohabitans Cu(2+)-transporting P-type ATPase CCC2 XP_018737756.1 2744911 R 796027 CDS AWJ20_2906 30034869 complement(2748871..2750556) B 1 NC_031674.1 Phosphorylated and palmitoylated vacuolar membrane protein; interacts with Atg13p, required for the cytoplasm-to-vacuole targeting (Cvt) pathway; interacts with Nvj1p to form nucleus-vacuole junctions; GO_component: GO:0071563 - Myo2p-Vac17p-Vac8p transport complex [Evidence IDA,IPI] [PMID 12529432]; GO_component: GO:0071563 - Myo2p-Vac17p-Vac8p transport complex [Evidence IPI] [PMID 12594460]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 16301533]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 9490720]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 9664035]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 9739084]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0071561 - nucleus-vacuole junction [Evidence IDA,IPI] [PMID 10888680]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0043495 - protein anchor [Evidence IMP,IPI] [PMID 10888680]; GO_function: GO:0043495 - protein anchor [Evidence IMP,IPI] [PMID 12594460]; GO_process: GO:0071255 - CVT vesicle assembly [Evidence IMP] [PMID 10837477]; GO_process: GO:0016236 - macroautophagy [Evidence IMP] [PMID 15901835]; GO_process: GO:0071562 - nucleus-vacuole junction assembly [Evidence IMP] [PMID 10888680]; GO_process: GO:0034727 - piecemeal microautophagy of nucleus [Evidence IMP] [PMID 12529432]; GO_process: GO:0034727 - piecemeal microautophagy of nucleus [Evidence IMP] [PMID 18701704]; GO_process: GO:0042144 - vacuole fusion, non-autophagic [Evidence IMP] [PMID 11441010]; GO_process: GO:0042144 - vacuole fusion, non-autophagic [Evidence IMP] [PMID 16301533]; GO_process: GO:0000011 - vacuole inheritance [Evidence IMP] [PMID 16301533]; GO_process: GO:0000011 - vacuole inheritance [Evidence IMP] [PMID 8885233]; protein anchor VAC8 2750556 VAC8 30034869 VAC8 Sugiyamaella lignohabitans protein anchor VAC8 XP_018737757.1 2748871 R 796027 CDS AWJ20_2907 30034870 complement(2754890..2756626) B 1 NC_031674.1 Non-essential conserved protein with a role in mRNA decapping; specifically affects the function of the decapping enzyme Dcp1p; mediates decay of the RPS28B mRNA via binding to both Rps28Bp (or Rps28Ap) and the RPS28B mRNA; mediates decay of the YRA1 mRNA by a different, translation-independent mechanism; localizes to cytoplasmic mRNA processing bodies; forms cytoplasmic foci upon DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 23706738]; GO_component: GO:0000932 - cytoplasmic mRNA processing body [Evidence IEA]; GO_component: GO:0000932 - cytoplasmic mRNA processing body [Evidence IDA] [PMID 15020463]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 23706738]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 24492965]; GO_process: GO:0033962 - cytoplasmic mRNA processing body assembly [Evidence IMP] [PMID 17984320]; GO_process: GO:0033962 - cytoplasmic mRNA processing body assembly [Evidence IGI,IMP] [PMID 18981231]; GO_process: GO:0031087 - deadenylation-independent decapping of nuclear-transcribed mRNA [Evidence IMP] [PMID 15225544]; GO_process: GO:1900153 - positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay [Evidence IMP] [PMID 24492965]; Edc3p 2756626 EDC3 30034870 EDC3 Sugiyamaella lignohabitans Edc3p XP_018737758.1 2754890 R 796027 CDS AWJ20_2908 30034871 complement(2757442..2759508) B 1 NC_031674.1 uncharacterized protein 2759508 30034871 AWJ20_2908 Sugiyamaella lignohabitans uncharacterized protein XP_018737759.1 2757442 R 796027 CDS AWJ20_2909 30034872 2768751..2769980 B 1 NC_031674.1 uncharacterized protein 2769980 30034872 AWJ20_2909 Sugiyamaella lignohabitans uncharacterized protein XP_018737760.1 2768751 D 796027 CDS AWJ20_2910 30034874 2770452..2771756 B 1 NC_031674.1 Aspartic protease; member of the yapsin family of proteases involved in cell wall growth and maintenance; attached to the plasma membrane via a glycosylphosphatidylinositol (GPI) anchor; GO_component: GO:0031225 - anchored component of membrane [Evidence IEA]; GO_component: GO:0046658 - anchored component of plasma membrane [Evidence IDA,IPI] [PMID 11016834]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_function: GO:0004190 - aspartic-type endopeptidase activity [Evidence IEA,IEA]; GO_function: GO:0004190 - aspartic-type endopeptidase activity [Evidence IDA,ISS] [PMID 10191273]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_process: GO:0031505 - fungal-type cell wall organization [Evidence IGI] [PMID 16087741]; GO_process: GO:0006508 - proteolysis [Evidence IEA,IEA]; Yps3p 2771756 YPS3 30034874 YPS3 Sugiyamaella lignohabitans Yps3p XP_018737761.1 2770452 D 796027 CDS AWJ20_2911 30034875 complement(2771850..2773145) B 1 NC_031674.1 serine/threonine protein kinase CHK1 2773145 CHK1 30034875 CHK1 Sugiyamaella lignohabitans serine/threonine protein kinase CHK1 XP_018737762.1 2771850 R 796027 CDS AWJ20_2912 30034876 complement(2773675..2775024) B 1 NC_031674.1 uncharacterized protein 2775024 30034876 AWJ20_2912 Sugiyamaella lignohabitans uncharacterized protein XP_018737763.1 2773675 R 796027 CDS AWJ20_2913 30034877 complement(2776052..2777512) B 1 NC_031674.1 E1 alpha subunit of the pyruvate dehydrogenase (PDH) complex; catalyzes the direct oxidative decarboxylation of pyruvate to acetyl-CoA; phosphorylated; regulated by glucose; GO_component: GO:0043231 - intracellular membrane-bounded organelle [Evidence IEA]; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA]; GO_component: GO:0042645 - mitochondrial nucleoid [Evidence IDA] [PMID 15692048]; GO_component: GO:0005967 - mitochondrial pyruvate dehydrogenase complex [Evidence IDA] [PMID 2007123]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 7589446]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0016624 - oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor [Evidence IEA]; GO_function: GO:0004739 - pyruvate dehydrogenase (acetyl-transferring) activity [Evidence IEA,IEA]; GO_function: GO:0004739 - pyruvate dehydrogenase (acetyl-transferring) activity [Evidence IMP] [PMID 11589696]; GO_process: GO:0006086 - acetyl-CoA biosynthetic process from pyruvate [Evidence IDA] [PMID 7947791]; GO_process: GO:0006096 - glycolytic process [Evidence IEA,IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0007124 - pseudohyphal growth [Evidence IMP] [PMID 24603354]; pyruvate dehydrogenase (acetyl-transferring) subunit E1 alpha 2777512 PDA1 30034877 PDA1 Sugiyamaella lignohabitans pyruvate dehydrogenase (acetyl-transferring) subunit E1 alpha XP_018737764.1 2776052 R 796027 CDS AWJ20_2914 30034878 2781619..2783778 B 1 NC_031674.1 Mg2+-dependent phosphatidate (PA) phosphatase; dephosphorylates PA to yield diacylglycerol; responsible for de novo lipid synthesis and formation of lipid droplets; phosphorylation by Pho80p-Pho85p decreases catalytic activity and alters Pah1p localization and abundance; phosphorylation by protein kinase A decreases catalytic efficiency; dephosphorylation by Nem1p-Spo7p anchors Pah1p to the membrane increasing substrate catalysis; homologous to mammalian lipins 1 and 2; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 16467296]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0019898 - extrinsic component of membrane [Evidence IDA] [PMID 16467296]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0031965 - nuclear membrane [Evidence IEA]; GO_component: GO:0031965 - nuclear membrane [Evidence IDA] [PMID 20876142]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IDA] [PMID 22121197]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0008195 - phosphatidate phosphatase activity [Evidence IEA]; GO_function: GO:0008195 - phosphatidate phosphatase activity [Evidence IDA,IMP] [PMID 16467296]; GO_function: GO:0044212 - transcription regulatory region DNA binding [Evidence IDA] [PMID 15889145]; GO_process: GO:0009060 - aerobic respiration [Evidence IMP] [PMID 8437575]; GO_process: GO:0016311 - dephosphorylation [Evidence IEA]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0034389 - lipid particle organization [Evidence IMP] [PMID 21422231]; GO_process: GO:0034389 - lipid particle organization [Evidence IGI] [PMID 21829381]; GO_process: GO:0008654 - phospholipid biosynthetic process [Evidence IMP] [PMID 16467296]; GO_process: GO:0008654 - phospholipid biosynthetic process [Evidence IMP] [PMID 17971454]; GO_process: GO:0006276 - plasmid maintenance [Evidence IMP] [PMID 8437575]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; GO_process: GO:0019432 - triglyceride biosynthetic process [Evidence IGI,IMP] [PMID 24196957]; GO_process: GO:0042144 - vacuole fusion, non-autophagic [Evidence IMP] [PMID 22121197]; phosphatidate phosphatase PAH1 2783778 PAH1 30034878 PAH1 Sugiyamaella lignohabitans phosphatidate phosphatase PAH1 XP_018737765.1 2781619 D 796027 CDS AWJ20_2916 30034880 2784654..2786297 B 1 NC_031674.1 U1 snRNP protein involved in splicing; contains multiple tetriatricopeptide repeats; GO_component: GO:0005685 - U1 snRNP [Evidence IDA] [PMID 8196608]; GO_component: GO:0005685 - U1 snRNP [Evidence IDA] [PMID 9630245]; GO_component: GO:0071004 - U2-type prespliceosome [Evidence IDA] [PMID 16618970]; GO_component: GO:0000243 - commitment complex [Evidence IGI] [PMID 8196608]; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0030627 - pre-mRNA 5'-splice site binding [Evidence IGI] [PMID 8196608]; GO_process: GO:0006396 - RNA processing [Evidence IEA]; GO_process: GO:0008380 - RNA splicing [Evidence IEA]; GO_process: GO:0000395 - mRNA 5'-splice site recognition [Evidence IGI] [PMID 8196608]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; Prp39p 2786297 PRP39 30034880 PRP39 Sugiyamaella lignohabitans Prp39p XP_018737766.1 2784654 D 796027 CDS AWJ20_2917 30034881 2787315..2789639 B 1 NC_031674.1 Putative kinase; suppressor of GTPase mutant, similar to bovine rhodopsin kinase; GO_component: GO:0030136 - clathrin-coated vesicle [Evidence IDA] [PMID 14562095]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0004672 - protein kinase activity [Evidence IEA]; GO_function: GO:0016772 - transferase activity, transferring phosphorus-containing groups [Evidence IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0006468 - protein phosphorylation [Evidence IEA]; Scy1p 2789639 SCY1 30034881 SCY1 Sugiyamaella lignohabitans Scy1p XP_018737767.1 2787315 D 796027 CDS AWJ20_2918 30034882 complement(join(2789823..2791118,2791194..2791241)) B 1 NC_031674.1 Subunit H of the V1 peripheral membrane domain of V-ATPase; part of the electrogenic proton pump found throughout the endomembrane system; serves as an activator or a structural stabilizer of the V-ATPase; the V1 peripheral membrane domain of the vacuolar H+-ATPase (V-ATPase) has eight subunits; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 23708375]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0000221 - vacuolar proton-transporting V-type ATPase, V1 domain [Evidence IEA]; GO_component: GO:0000221 - vacuolar proton-transporting V-type ATPase, V1 domain [Evidence TAS] [PMID 10224039]; GO_component: GO:0000221 - vacuolar proton-transporting V-type ATPase, V1 domain [Evidence TAS] [PMID 9442887]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0016820 - hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances [Evidence IEA]; GO_function: GO:0046961 - proton-transporting ATPase activity, rotational mechanism [Evidence IEA]; GO_function: GO:0046961 - proton-transporting ATPase activity, rotational mechanism [Evidence TAS] [PMID 10224039]; GO_function: GO:0046961 - proton-transporting ATPase activity, rotational mechanism [Evidence TAS] [PMID 9442887]; GO_process: GO:0015991 - ATP hydrolysis coupled proton transport [Evidence IEA]; GO_process: GO:0006811 - ion transport [Evidence IEA]; GO_process: GO:0015992 - proton transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0007035 - vacuolar acidification [Evidence TAS] [PMID 10224039]; GO_process: GO:0007035 - vacuolar acidification [Evidence TAS] [PMID 9442887]; H(+)-transporting V1 sector ATPase subunit H 2791241 VMA13 30034882 VMA13 Sugiyamaella lignohabitans H(+)-transporting V1 sector ATPase subunit H XP_018737768.1 2789823 R 796027 CDS AWJ20_2919 30034883 2795839..2797593 B 1 NC_031674.1 Integral membrane peptide transporter; mediates transport of di- and tri-peptides; conserved protein that contains 12 transmembrane domains; PTR2 expression is regulated by the N-end rule pathway via repression by Cup9p; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 12469340]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 17507646]; GO_function: GO:0042936 - dipeptide transporter activity [Evidence IDA] [PMID 16096264]; GO_function: GO:0015197 - peptide transporter activity [Evidence IMP] [PMID 8264579]; GO_function: GO:0005215 - transporter activity [Evidence IEA]; GO_function: GO:0042937 - tripeptide transporter activity [Evidence IDA] [PMID 16096264]; GO_process: GO:0042938 - dipeptide transport [Evidence IDA] [PMID 16096264]; GO_process: GO:0006857 - oligopeptide transport [Evidence IEA]; GO_process: GO:0015833 - peptide transport [Evidence IEA]; GO_process: GO:0015833 - peptide transport [Evidence IMP] [PMID 8264579]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; GO_process: GO:0042939 - tripeptide transport [Evidence IDA] [PMID 16096264]; Ptr2p 2797593 PTR2 30034883 PTR2 Sugiyamaella lignohabitans Ptr2p XP_018737769.1 2795839 D 796027 CDS AWJ20_2920 30034885 complement(2796826..2797149) B 1 NC_031674.1 uncharacterized protein 2797149 30034885 AWJ20_2920 Sugiyamaella lignohabitans uncharacterized protein XP_018737770.1 2796826 R 796027 CDS AWJ20_2921 30034886 complement(2797947..2798513) B 1 NC_031674.1 Nuclear protein involved in asymmetric localization of ASH1 mRNA; binds double-stranded RNA in vitro; constituent of 66S pre-ribosomal particles; required at post-transcriptional step for efficient retrotransposition; absence results in decreased Ty1 Gag:GFP protein levels; relocalizes from nucleus to cytoplasm upon DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 16871394]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 11583614]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 17443350]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 23212245]; GO_function: GO:0003729 - mRNA binding [Evidence IDA,IPI] [PMID 11309412]; GO_process: GO:0000480 - endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 16871394]; GO_process: GO:0000447 - endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 16871394]; GO_process: GO:0000472 - endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 16871394]; GO_process: GO:0008298 - intracellular mRNA localization [Evidence IMP] [PMID 11309412]; GO_process: GO:0051028 - mRNA transport [Evidence IEA]; GO_process: GO:0042273 - ribosomal large subunit biogenesis [Evidence IMP,IPI] [PMID 11583614]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Loc1p 2798513 LOC1 30034886 LOC1 Sugiyamaella lignohabitans Loc1p XP_018737771.1 2797947 R 796027 CDS AWJ20_2922 30034887 2799157..2799639 B 1 NC_031674.1 Phosphatase with a broad substrate specificity; has some similarity to GPM1/YKL152C, a phosphoglycerate mutase; YOR283W is not an essential gene; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016791 - phosphatase activity [Evidence IDA] [PMID 19753119]; GO_function: GO:0016791 - phosphatase activity [Evidence IDA] [PMID 20427268]; GO_process: GO:0016311 - dephosphorylation [Evidence IDA] [PMID 19753119]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; phosphoglycerate mutase 2799639 30034887 AWJ20_2922 Sugiyamaella lignohabitans phosphoglycerate mutase XP_018737772.1 2799157 D 796027 CDS AWJ20_2923 30034888 2802199..2803158 B 1 NC_031674.1 Protein with ubiquitin-like N terminus; subunit of Nuclear Excision Repair Factor 2 (NEF2) with Rad4p that binds damaged DNA; enhances protein deglycosylation activity of Png1p; also involved, with Rad4p, in ubiquitylated protein turnover; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0000111 - nucleotide-excision repair factor 2 complex [Evidence IDA] [PMID 7768886]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0000502 - proteasome complex [Evidence IPI] [PMID 15117949]; GO_component: GO:0000502 - proteasome complex [Evidence IMP] [PMID 15242647]; GO_function: GO:0003684 - damaged DNA binding [Evidence IEA]; GO_function: GO:0003684 - damaged DNA binding [Evidence IDA] [PMID 9813069]; GO_function: GO:0003684 - damaged DNA binding [Evidence IDA] [PMID 9837874]; GO_function: GO:0000224 - peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase activity [Evidence IDA] [PMID 20016784]; GO_function: GO:0030674 - protein binding, bridging [Evidence IPI] [PMID 15121879]; GO_function: GO:0043130 - ubiquitin binding [Evidence IDA] [PMID 11323716]; GO_process: GO:0006281 - DNA repair [Evidence IEA]; GO_process: GO:0030433 - ER-associated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 15167887]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0006289 - nucleotide-excision repair [Evidence IEA]; GO_process: GO:0043161 - proteasome-mediated ubiquitin-dependent protein catabolic process [Evidence IEA]; GO_process: GO:0043161 - proteasome-mediated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 19889839]; GO_process: GO:0006517 - protein deglycosylation [Evidence IDA] [PMID 20016784]; Rad23p 2803158 RAD23 30034888 RAD23 Sugiyamaella lignohabitans Rad23p XP_018737773.1 2802199 D 796027 CDS AWJ20_2924 30034889 complement(2803300..2803941) B 1 NC_031674.1 uncharacterized protein 2803941 30034889 AWJ20_2924 Sugiyamaella lignohabitans uncharacterized protein XP_018737774.1 2803300 R 796027 CDS AWJ20_2925 30034890 complement(2804542..2806548) B 1 NC_031674.1 Transport adaptor or symportin; facilitates synchronized nuclear coimport of the two 5S-rRNA binding proteins Rpl5p and Rpl11p; required for biogenesis of the large ribosomal subunit; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm and nucleus; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006606 - protein import into nucleus [Evidence IGI] [PMID 23118189]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0042273 - ribosomal large subunit biogenesis [Evidence IMP] [PMID 19806183]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Syo1p 2806548 SYO1 30034890 SYO1 Sugiyamaella lignohabitans Syo1p XP_018737775.1 2804542 R 796027 CDS AWJ20_2926 30034891 complement(2806727..2808055) B 1 NC_031674.1 Catalytic subunit of adoMet-dependent tRNA methyltransferase complex; required for the methylation of the guanosine nucleotide at position 10 (m2G10) in tRNAs; contains a THUMP domain and a methyltransferase domain; another complex member is Trm112p; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 15899842]; GO_component: GO:0043528 - tRNA (m2G10) methyltransferase complex [Evidence IPI] [PMID 15899842]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence ISS] [PMID 15899842]; GO_function: GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity [Evidence ISS] [PMID 12872006]; GO_function: GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity [Evidence ISS] [PMID 15899842]; GO_function: GO:0008168 - methyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0004809 - tRNA (guanine-N2-)-methyltransferase activity [Evidence IDA,IMP] [PMID 15899842]; GO_function: GO:0000049 - tRNA binding [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0032259 - methylation [Evidence IEA,IEA]; GO_process: GO:0030488 - tRNA methylation [Evidence IDA,IMP] [PMID 15899842]; GO_process: GO:0008033 - tRNA processing [Evidence IEA]; Trm11p 2808055 TRM11 30034891 TRM11 Sugiyamaella lignohabitans Trm11p XP_018737776.1 2806727 R 796027 CDS AWJ20_2927 30034892 2809243..2810427 B 1 NC_031674.1 Subunit of cleavage factor I; cleavage factor I is a five-subunit complex required for the cleavage and polyadenylation of pre-mRNA 3' ends; RRM-containing heteronuclear RNA binding protein and hnRNPA/B family member that binds to poly (A) signal sequences; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 9334319]; GO_component: GO:0010494 - cytoplasmic stress granule [Evidence IDA] [PMID 18981231]; GO_component: GO:0005849 - mRNA cleavage factor complex [Evidence IPI] [PMID 11344258]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11914276]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 15572678]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9334319]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IDA] [PMID 9334319]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 15703440]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 17684230]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006379 - mRNA cleavage [Evidence IDA] [PMID 11344258]; GO_process: GO:0006378 - mRNA polyadenylation [Evidence IDA] [PMID 11344258]; GO_process: GO:0006378 - mRNA polyadenylation [Evidence IMP] [PMID 9334319]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0000184 - nuclear-transcribed mRNA catabolic process, nonsense-mediated decay [Evidence IEA]; Hrp1p 2810427 HRP1 30034892 HRP1 Sugiyamaella lignohabitans Hrp1p XP_018737777.1 2809243 D 796027 CDS AWJ20_2928 30034893 2811468..2812877 B 1 NC_031674.1 Vacuolar membrane zinc transporter; transports zinc from storage in the vacuole to the cytoplasm when needed; transcription is induced under conditions of zinc deficiency; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 10856230]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0046873 - metal ion transmembrane transporter activity [Evidence IEA]; GO_function: GO:0005385 - zinc ion transmembrane transporter activity [Evidence IMP] [PMID 10856230]; GO_process: GO:0006882 - cellular zinc ion homeostasis [Evidence IMP] [PMID 10856230]; GO_process: GO:0006811 - ion transport [Evidence IEA]; GO_process: GO:0030001 - metal ion transport [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0006829 - zinc ion transport [Evidence IEA]; GO_process: GO:0006829 - zinc ion transport [Evidence IMP] [PMID 10856230]; Zn(2+) transporter ZRT3 2812877 ZRT3 30034893 ZRT3 Sugiyamaella lignohabitans Zn(2+) transporter ZRT3 XP_018737778.1 2811468 D 796027 CDS AWJ20_2929 30034894 complement(2813035..2814702) B 1 NC_031674.1 Divalent metal ion transporter; broad specificity for di-valent and tri-valent metals; post-translationally regulated by levels of metal ions; member of the Nramp family of metal transport proteins; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 8643535]; GO_function: GO:0022890 - inorganic cation transmembrane transporter activity [Evidence IDA] [PMID 10574989]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0015295 - solute:proton symporter activity [Evidence IDA] [PMID 10574989]; GO_function: GO:0005215 - transporter activity [Evidence IEA]; GO_process: GO:0015691 - cadmium ion transport [Evidence IGI] [PMID 9115231]; GO_process: GO:0006876 - cellular cadmium ion homeostasis [Evidence IGI] [PMID 9115231]; GO_process: GO:0006878 - cellular copper ion homeostasis [Evidence IGI] [PMID 9115231]; GO_process: GO:0030026 - cellular manganese ion homeostasis [Evidence IMP] [PMID 8643535]; GO_process: GO:0006825 - copper ion transport [Evidence IGI] [PMID 9115231]; GO_process: GO:0006826 - iron ion transport [Evidence IGI] [PMID 10930410]; GO_process: GO:0006828 - manganese ion transport [Evidence IMP] [PMID 8643535]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; divalent metal ion transporter SMF1 2814702 SMF1 30034894 SMF1 Sugiyamaella lignohabitans divalent metal ion transporter SMF1 XP_018737779.1 2813035 R 796027 CDS AWJ20_2930 30034896 complement(join(2815852..2816204,2816627..2816837)) B 1 NC_031674.1 Nucleosome assembly factor; involved in chromatin assembly and disassembly, anti-silencing protein that causes derepression of silent loci when overexpressed; plays a role in regulating Ty1 transposition; relocalizes to the cytosol in response to hypoxia; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 22932476]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11404324]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22932476]; GO_function: GO:0042393 - histone binding [Evidence IMP] [PMID 15840725]; GO_process: GO:0006335 - DNA replication-dependent nucleosome assembly [Evidence IDA] [PMID 11412995]; GO_process: GO:0006336 - DNA replication-independent nucleosome assembly [Evidence IDA] [PMID 16303565]; GO_process: GO:0006333 - chromatin assembly or disassembly [Evidence IEA]; GO_process: GO:0016568 - chromatin modification [Evidence IEA]; GO_process: GO:0030466 - chromatin silencing at silent mating-type cassette [Evidence IGI] [PMID 15840725]; GO_process: GO:0006348 - chromatin silencing at telomere [Evidence IGI] [PMID 15840725]; GO_process: GO:0033523 - histone H2B ubiquitination [Evidence IMP] [PMID 24824343]; GO_process: GO:0016573 - histone acetylation [Evidence IMP] [PMID 16627621]; GO_process: GO:0043486 - histone exchange [Evidence IMP] [PMID 17679090]; GO_process: GO:0006337 - nucleosome disassembly [Evidence IMP] [PMID 16678113]; GO_process: GO:0035066 - positive regulation of histone acetylation [Evidence IDA,IMP] [PMID 17272722]; GO_process: GO:0035066 - positive regulation of histone acetylation [Evidence IMP] [PMID 17679090]; GO_process: GO:0035066 - positive regulation of histone acetylation [Evidence IMP,IPI] [PMID 17690098]; GO_process: GO:0035066 - positive regulation of histone acetylation [Evidence IDA,IGI,IMP] [PMID 18458063]; GO_process: GO:0032968 - positive regulation of transcription elongation from RNA polymerase II promoter [Evidence IDA] [PMID 22308335]; GO_process: GO:0043618 - regulation of transcription from RNA polymerase II promoter in response to stress [Evidence IMP] [PMID 19620280]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; nucleosome assembly factor ASF1 2816837 ASF1 30034896 ASF1 Sugiyamaella lignohabitans nucleosome assembly factor ASF1 XP_018737780.1 2815852 R 796027 CDS AWJ20_2931 30034897 2818807..2820654 B 1 NC_031674.1 Myo-inositol transporter; member of the sugar transporter superfamily; expression is repressed by inositol and choline via Opi1p and derepressed via Ino2p and Ino4p; relative distribution to the vacuole increases upon DNA replication stress; ITR1 has a paralog, ITR2, that arose from the whole genome duplication; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 22842922]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA,IEA]; GO_component: GO:0016020 - membrane [Evidence ISS] [PMID 2040626]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 16233524]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 22842922]; GO_function: GO:0005365 - myo-inositol transmembrane transporter activity [Evidence IMP,ISS] [PMID 2040626]; GO_function: GO:0022891 - substrate-specific transmembrane transporter activity [Evidence IEA]; GO_function: GO:0022857 - transmembrane transporter activity [Evidence IEA]; GO_function: GO:0005215 - transporter activity [Evidence IEA]; GO_process: GO:0015798 - myo-inositol transport [Evidence IMP] [PMID 2040626]; GO_process: GO:0007124 - pseudohyphal growth [Evidence IMP] [PMID 24603354]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IMP] [PMID 2040626]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; myo-inositol transporter ITR1 2820654 ITR1 30034897 ITR1 Sugiyamaella lignohabitans myo-inositol transporter ITR1 XP_018737781.1 2818807 D 796027 CDS AWJ20_2932 30034898 2821574..2826457 B 1 NC_031674.1 Phospholipase D; catalyzes the hydrolysis of phosphatidylcholine, producing choline and phosphatidic acid; involved in Sec14p-independent secretion; required for meiosis and spore formation; differently regulated in secretion and meiosis; participates in transcription initiation and/or early elongation of specific genes; interacts with 'foot domain' of RNA polymerase II; deletion results in abnormal CTD-Ser5 phosphorylation of RNA polymerase II at specific promoter regions; GO_component: GO:0005768 - endosome [Evidence IDA] [PMID 10848624]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 21954159]; GO_component: GO:0005628 - prospore membrane [Evidence IDA] [PMID 9693364]; GO_function: GO:0070290 - N-acylphosphatidylethanolamine-specific phospholipase D activity [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0035091 - phosphatidylinositol binding [Evidence IEA]; GO_function: GO:0032266 - phosphatidylinositol-3-phosphate binding [Evidence IDA] [PMID 11557775]; GO_function: GO:0004630 - phospholipase D activity [Evidence IEA]; GO_function: GO:0004630 - phospholipase D activity [Evidence IDA] [PMID 11514437]; GO_process: GO:0031321 - ascospore-type prospore assembly [Evidence IMP] [PMID 16554438]; GO_process: GO:0000753 - cell morphogenesis involved in conjugation with cellular fusion [Evidence IMP] [PMID 12702348]; GO_process: GO:0000753 - cell morphogenesis involved in conjugation with cellular fusion [Evidence IGI] [PMID 18036176]; GO_process: GO:0006887 - exocytosis [Evidence IGI] [PMID 10848624]; GO_process: GO:0006887 - exocytosis [Evidence IGI] [PMID 11514437]; GO_process: GO:0016042 - lipid catabolic process [Evidence IEA]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0007126 - meiotic nuclear division [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0006644 - phospholipid metabolic process [Evidence IDA,IMP] [PMID 8576189]; GO_process: GO:0030435 - sporulation resulting in formation of a cellular spore [Evidence IEA]; phospholipase D 2826457 SPO14 30034898 SPO14 Sugiyamaella lignohabitans phospholipase D XP_018737782.1 2821574 D 796027 CDS AWJ20_2933 30034899 complement(2828685..2830736) B 1 NC_031674.1 Serine/threonine protein phosphatase Z, isoform of Ppz2p; involved in regulation of potassium transport, which affects osmotic stability, cell cycle progression, and halotolerance; PPZ1 has a paralog, PPZ2, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0019897 - extrinsic component of plasma membrane [Evidence IDA] [PMID 16166647]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11914276]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 8824289]; GO_function: GO:0048037 - cofactor binding [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA,IEA]; GO_function: GO:0004724 - magnesium-dependent protein serine/threonine phosphatase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004721 - phosphoprotein phosphatase activity [Evidence IEA,IEA]; GO_function: GO:0004722 - protein serine/threonine phosphatase activity [Evidence IDA] [PMID 7615085]; GO_process: GO:0034613 - cellular protein localization [Evidence IMP] [PMID 21237705]; GO_process: GO:0006883 - cellular sodium ion homeostasis [Evidence IGI,IMP] [PMID 7768897]; GO_process: GO:0006470 - protein dephosphorylation [Evidence IMP] [PMID 21237705]; Ppz1p 2830736 PPZ1 30034899 PPZ1 Sugiyamaella lignohabitans Ppz1p XP_018737783.1 2828685 R 796027 CDS AWJ20_2934 30034900 complement(2831431..2833476) B 1 NC_031674.1 DNA replication initiation factor; recruited to MCM pre-RC complexes at replication origins; promotes release of MCM from Mcm10p, recruits elongation machinery; binds tightly to ssDNA, which disrupts interaction with the MCM helicase and stalls it during replication stress; mutants in human homolog may cause velocardiofacial and DiGeorge syndromes; GO_component: GO:0031261 - DNA replication preinitiation complex [Evidence IDA] [PMID 9554851]; GO_component: GO:0005656 - nuclear pre-replicative complex [Evidence IDA] [PMID 9335335]; GO_component: GO:0043596 - nuclear replication fork [Evidence IDA] [PMID 16103218]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 8901577]; GO_component: GO:0031298 - replication fork protection complex [Evidence IDA] [PMID 16531994]; GO_function: GO:0003688 - DNA replication origin binding [Evidence IDA] [PMID 12019222]; GO_function: GO:0003682 - chromatin binding [Evidence IDA] [PMID 15494305]; GO_function: GO:0003682 - chromatin binding [Evidence IDA] [PMID 9554851]; GO_function: GO:0003697 - single-stranded DNA binding [Evidence IDA,IMP] [PMID 23382391]; GO_process: GO:0006260 - DNA replication [Evidence IEA]; GO_process: GO:0006270 - DNA replication initiation [Evidence IEA]; GO_process: GO:0006270 - DNA replication initiation [Evidence IGI,IMP] [PMID 2044962]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0000727 - double-strand break repair via break-induced replication [Evidence IMP] [PMID 20516198]; GO_process: GO:0006267 - pre-replicative complex assembly involved in nuclear cell cycle DNA replication [Evidence IPI] [PMID 9335335]; GO_process: GO:0031938 - regulation of chromatin silencing at telomere [Evidence IMP] [PMID 16980387]; Cdc45p 2833476 CDC45 30034900 CDC45 Sugiyamaella lignohabitans Cdc45p XP_018737784.1 2831431 R 796027 CDS AWJ20_2935 30034901 2835052..2836026 B 1 NC_031674.1 uncharacterized protein 2836026 30034901 AWJ20_2935 Sugiyamaella lignohabitans uncharacterized protein XP_018737785.1 2835052 D 796027 CDS AWJ20_2936 30034902 complement(2842192..2843106) B 1 NC_031674.1 Ferric reductase and cupric reductase; reduces siderophore-bound iron and oxidized copper prior to uptake by transporters; expression induced by low copper and iron levels; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 17507646]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 8164662]; GO_function: GO:0052851 - ferric-chelate reductase (NADPH) activity [Evidence IEA]; GO_function: GO:0000293 - ferric-chelate reductase activity [Evidence IDA] [PMID 8164662]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_process: GO:0015677 - copper ion import [Evidence IDA] [PMID 7814363]; GO_process: GO:0006825 - copper ion transport [Evidence IEA]; GO_process: GO:0006811 - ion transport [Evidence IEA]; GO_process: GO:0055072 - iron ion homeostasis [Evidence IEA]; GO_process: GO:0006826 - iron ion transport [Evidence IDA] [PMID 8164662]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; Fre1p 2843106 FRE1 30034902 FRE1 Sugiyamaella lignohabitans Fre1p XP_018737786.1 2842192 R 796027 CDS AWJ20_2937 30034903 complement(2844620..2845570) B 1 NC_031674.1 Putative ferric reductase with similarity to Fre2p; expression induced by low iron levels; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_function: GO:0052851 - ferric-chelate reductase (NADPH) activity [Evidence IEA]; GO_function: GO:0000293 - ferric-chelate reductase activity [Evidence ISA] [PMID 9726978]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0006811 - ion transport [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; Fre5p 2845570 FRE5 30034903 FRE5 Sugiyamaella lignohabitans Fre5p XP_018737787.1 2844620 R 796027 CDS AWJ20_2938 30034904 complement(2847617..2848651) B 1 NC_031674.1 Anillin-like protein involved in bud-site selection; required for the axial budding pattern; localizes with septins to the bud neck in mitosis and may constitute an axial landmark for the next round of budding; required for the formation and disassembly of the double septin ring structure, and generally for septin organization; in vivo substrate of Cdc28p/Clb2p; GO_component: GO:0005935 - cellular bud neck [Evidence IEA]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 22842922]; GO_component: GO:0000142 - cellular bud neck contractile ring [Evidence IDA] [PMID 22553209]; GO_function: GO:0005525 - GTP binding [Evidence IDA,IMP] [PMID 22553209]; GO_process: GO:0007120 - axial cellular bud site selection [Evidence IMP] [PMID 22553209]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0097271 - protein localization to bud neck [Evidence IMP] [PMID 22553209]; Bud4p 2848651 BUD4 30034904 BUD4 Sugiyamaella lignohabitans Bud4p XP_018737788.1 2847617 R 796027 CDS AWJ20_2939 30034905 2854398..2856521 B 1 NC_031674.1 Putative mitochondrial aconitase isozyme; similarity to Aco1p, an aconitase required for the TCA cycle; expression induced during growth on glucose, by amino acid starvation via Gcn4p, and repressed on ethanol; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA,IEA]; GO_function: GO:0003994 - aconitate hydratase activity [Evidence IEA]; GO_function: GO:0003994 - aconitate hydratase activity [Evidence ISS] [PMID 10592175]; GO_function: GO:0051536 - iron-sulfur cluster binding [Evidence IEA]; GO_function: GO:0016829 - lyase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0009085 - lysine biosynthetic process [Evidence IEA]; GO_process: GO:0019878 - lysine biosynthetic process via aminoadipic acid [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0006099 - tricarboxylic acid cycle [Evidence IEA]; aconitate hydratase ACO2 2856521 ACO2 30034905 ACO2 Sugiyamaella lignohabitans aconitate hydratase ACO2 XP_018737789.1 2854398 D 796027 CDS AWJ20_2940 30034907 complement(2856633..2860274) B 1 NC_031674.1 Ras family guanine nucleotide exchange factor CDC25 2860274 CDC25 30034907 CDC25 Sugiyamaella lignohabitans Ras family guanine nucleotide exchange factor CDC25 XP_018737790.1 2856633 R 796027 CDS AWJ20_2941 30034908 complement(2862787..2863974) B 1 NC_031674.1 Fe(II)-dependent sulfonate/alpha-ketoglutarate dioxygenase; involved in sulfonate catabolism for use as a sulfur source; contains sequence that resembles a J domain (typified by the E. coli DnaJ protein); induced by sulphur starvation; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0051213 - dioxygenase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0000907 - sulfonate dioxygenase activity [Evidence IDA] [PMID 10482536]; GO_process: GO:0046306 - alkanesulfonate catabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0044273 - sulfur compound catabolic process [Evidence IMP] [PMID 10482536]; Jlp1p 2863974 JLP1 30034908 JLP1 Sugiyamaella lignohabitans Jlp1p XP_018737791.1 2862787 R 796027 CDS AWJ20_2942 30034909 complement(2864351..2865949) B 1 NC_031674.1 C6 finger domain protein 2865949 30034909 AWJ20_2942 Sugiyamaella lignohabitans C6 finger domain protein XP_018737792.1 2864351 R 796027 CDS AWJ20_2943 30034910 2866973..2868979 B 1 NC_031674.1 copper-containing amine oxidase 2868979 30034910 AWJ20_2943 Sugiyamaella lignohabitans copper-containing amine oxidase XP_018737793.1 2866973 D 796027 CDS AWJ20_2944 30034911 complement(2869014..2870000) B 1 NC_031674.1 Sterol deacetylase; component of the sterol acetylation/deacetylation cycle along with Atf2p; active both in the endoplasmic reticulum (ER) and in lipid droplets; integral membrane protein with active site in the ER lumen; green fluorescent protein (GFP)-fusion protein localizes to the ER; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 14562095]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 24868093]; GO_component: GO:0005788 - endoplasmic reticulum lumen [Evidence IDA] [PMID 18034159]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IDA] [PMID 18034159]; GO_component: GO:0005811 - lipid particle [Evidence IDA] [PMID 24868093]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0034084 - steryl deacetylase activity [Evidence IDA,IMP] [PMID 18034159]; GO_process: GO:0009636 - response to toxic substance [Evidence IMP] [PMID 18034159]; GO_process: GO:0034210 - sterol deacetylation [Evidence IMP] [PMID 18034159]; GO_process: GO:0016125 - sterol metabolic process [Evidence IMP] [PMID 18034159]; Say1p 2870000 SAY1 30034911 SAY1 Sugiyamaella lignohabitans Say1p XP_018737794.1 2869014 R 796027 CDS AWJ20_2945 30034912 2870752..2872350 B 1 NC_031674.1 uncharacterized protein 2872350 30034912 AWJ20_2945 Sugiyamaella lignohabitans uncharacterized protein XP_018737795.1 2870752 D 796027 CDS AWJ20_2946 30034913 2872577..2873833 B 1 NC_031674.1 similar to S.kluyveri pyd3 (AAK60518) beta-alanine synthase involved in pyrimidine catabolism; allele of CaO19.8949; putative beta-alanine synthase 2873833 PYD3 30034913 PYD3 Sugiyamaella lignohabitans putative beta-alanine synthase XP_018737796.1 2872577 D 796027 CDS AWJ20_2947 30034914 complement(2873856..2875625) B 1 NC_031674.1 Transcription factor; involved in regulating multidrug resistance and oxidative stress response; forms a heterodimer with Pdr1p; contains a Zn(II)2Cys6 zinc finger domain that interacts with a pleiotropic drug resistance element in vitro; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IPI] [PMID 11943786]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19111667]; GO_function: GO:0000981 - sequence-specific DNA binding RNA polymerase II transcription factor activity [Evidence IEA]; GO_function: GO:0003700 - sequence-specific DNA binding transcription factor activity [Evidence IDA,IGI,IMP,IPI,ISS] [PMID 11943786]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0043619 - regulation of transcription from RNA polymerase II promoter in response to oxidative stress [Evidence IMP] [PMID 16914749]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA,IEA]; GO_process: GO:0009410 - response to xenobiotic stimulus [Evidence IMP] [PMID 11943786]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA,IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IDA] [PMID 11943786]; Stb5p 2875625 STB5 30034914 STB5 Sugiyamaella lignohabitans Stb5p XP_018737797.1 2873856 R 796027 CDS AWJ20_2948 30034915 complement(2876018..2877655) B 1 NC_031674.1 uncharacterized protein 2877655 30034915 AWJ20_2948 Sugiyamaella lignohabitans uncharacterized protein XP_018737798.1 2876018 R 796027 CDS AWJ20_2949 30034916 2878843..2881092 B 1 NC_031674.1 uncharacterized protein 2881092 30034916 AWJ20_2949 Sugiyamaella lignohabitans uncharacterized protein XP_018737799.1 2878843 D 796027 CDS AWJ20_2950 30034918 complement(2881200..2882501) B 1 NC_031674.1 uncharacterized protein 2882501 30034918 AWJ20_2950 Sugiyamaella lignohabitans uncharacterized protein XP_018737800.1 2881200 R 796027 CDS AWJ20_2951 30034919 2882902..2884266 B 1 NC_031674.1 Essential Hsp90p co-chaperone; necessary for passage through the START phase of the cell cycle; stabilizes protein kinase nascent chains and participates along with Hsp90p in their folding; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0019901 - protein kinase binding [Evidence IEA]; GO_function: GO:0051082 - unfolded protein binding [Evidence IDA] [PMID 9242486]; GO_process: GO:0000161 - MAPK cascade involved in osmosensory signaling pathway [Evidence IMP,IPI] [PMID 17220467]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0050821 - protein stabilization [Evidence IMP] [PMID 17242065]; GO_process: GO:0051726 - regulation of cell cycle [Evidence IMP] [PMID 7753858]; GO_process: GO:0032872 - regulation of stress-activated MAPK cascade [Evidence IMP,IPI] [PMID 17220467]; GO_process: GO:0030474 - spindle pole body duplication [Evidence IGI,IMP] [PMID 9060463]; Cdc37p 2884266 CDC37 30034919 CDC37 Sugiyamaella lignohabitans Cdc37p XP_018737801.1 2882902 D 796027 CDS AWJ20_2952 30034920 2884654..2886630 B 1 NC_031674.1 Cytoplasmic and mitochondrial glycyl-tRNA synthase; ligates glycine to the cognate anticodon-bearing tRNA; transcription termination factor that may interact with the 3'-end of pre-mRNA to promote 3'-end formation; GRS1 has a paralog, GRS2, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IMP] [PMID 10874035]; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IMP] [PMID 10874035]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004812 - aminoacyl-tRNA ligase activity [Evidence IEA,IEA]; GO_function: GO:0004820 - glycine-tRNA ligase activity [Evidence IEA,IEA]; GO_function: GO:0004820 - glycine-tRNA ligase activity [Evidence IMP,ISS] [PMID 10874035]; GO_function: GO:0004820 - glycine-tRNA ligase activity [Evidence IDA] [PMID 21877692]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_process: GO:0006353 - DNA-templated transcription, termination [Evidence IMP] [PMID 10224248]; GO_process: GO:0006426 - glycyl-tRNA aminoacylation [Evidence IEA]; GO_process: GO:0006426 - glycyl-tRNA aminoacylation [Evidence IMP,ISS] [PMID 10874035]; GO_process: GO:0070150 - mitochondrial glycyl-tRNA aminoacylation [Evidence IMP] [PMID 10874035]; GO_process: GO:0006418 - tRNA aminoacylation for protein translation [Evidence IEA]; GO_process: GO:0006412 - translation [Evidence IEA]; glycine--tRNA ligase 2886630 GRS1 30034920 GRS1 Sugiyamaella lignohabitans glycine--tRNA ligase XP_018737802.1 2884654 D 796027 CDS AWJ20_2953 30034921 complement(2887422..2888021) B 1 NC_031674.1 U1 snRNP A protein; homolog of human U1-A; involved in nuclear mRNA splicing; GO_component: GO:0005685 - U1 snRNP [Evidence IDA] [PMID 9630245]; GO_component: GO:0071004 - U2-type prespliceosome [Evidence IDA] [PMID 16618970]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005681 - spliceosomal complex [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IGI,ISS] [PMID 8449403]; GO_function: GO:0030619 - U1 snRNA binding [Evidence IPI] [PMID 8849781]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0017069 - snRNA binding [Evidence IEA]; GO_process: GO:0008380 - RNA splicing [Evidence IEA]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0000398 - mRNA splicing, via spliceosome [Evidence IEA]; GO_process: GO:0000398 - mRNA splicing, via spliceosome [Evidence IGI] [PMID 8449403]; Mud1p 2888021 MUD1 30034921 MUD1 Sugiyamaella lignohabitans Mud1p XP_018737803.1 2887422 R 796027 CDS AWJ20_2954 30034922 2888614..2889240 B 1 NC_031674.1 Chaperone protein dnaJ 2889240 HLJ1 30034922 HLJ1 Sugiyamaella lignohabitans Chaperone protein dnaJ XP_018737804.1 2888614 D 796027 CDS AWJ20_2955 30034923 2889633..2890028 B 1 NC_031674.1 One of two mitochondrially-localized peptidyl-tRNA hydrolases; negatively regulates the ubiquitin-proteasome pathway via interactions with ubiquitin-like ubiquitin-associated proteins; dispensable for cell growth; see also PTH1; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IC] [PMID 12475929]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IDA] [PMID 16407407]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0004045 - aminoacyl-tRNA hydrolase activity [Evidence IEA,IEA]; GO_function: GO:0004045 - aminoacyl-tRNA hydrolase activity [Evidence IGI] [PMID 12475929]; GO_function: GO:0004045 - aminoacyl-tRNA hydrolase activity [Evidence IDA] [PMID 12799450]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA,IEA,IEA]; GO_process: GO:0032435 - negative regulation of proteasomal ubiquitin-dependent protein catabolic process [Evidence IDA,IMP] [PMID 17082762]; Pth2p 2890028 PTH2 30034923 PTH2 Sugiyamaella lignohabitans Pth2p XP_018737805.1 2889633 D 796027 CDS AWJ20_2956 30034924 complement(2890150..2892816) B 1 NC_031674.1 uncharacterized protein 2892816 30034924 AWJ20_2956 Sugiyamaella lignohabitans uncharacterized protein XP_018737806.1 2890150 R 796027 CDS AWJ20_2957 30034925 complement(2893300..2894577) B 1 NC_031674.1 C-22 sterol desaturase; a cytochrome P450 enzyme that catalyzes the formation of the C-22(23) double bond in the sterol side chain in ergosterol biosynthesis; may be a target of azole antifungal drugs; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 14562095]; GO_function: GO:0000249 - C-22 sterol desaturase activity [Evidence IDA] [PMID 8543054]; GO_function: GO:0020037 - heme binding [Evidence IEA]; GO_function: GO:0005506 - iron ion binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004497 - monooxygenase activity [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [Evidence IEA]; GO_process: GO:0006696 - ergosterol biosynthetic process [Evidence IDA] [PMID 8543054]; GO_process: GO:0006696 - ergosterol biosynthetic process [Evidence IMP] [PMID 8635732]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0006694 - steroid biosynthetic process [Evidence IEA]; GO_process: GO:0008202 - steroid metabolic process [Evidence IEA]; GO_process: GO:0016126 - sterol biosynthetic process [Evidence IEA,IEA]; C-22 sterol desaturase 2894577 ERG5 30034925 ERG5 Sugiyamaella lignohabitans C-22 sterol desaturase XP_018737807.1 2893300 R 796027 CDS AWJ20_2958 30034926 complement(2896996..2898279) B 1 NC_031674.1 Subunit of the alpha-1,6 mannosyltransferase complex; type II membrane protein; has a role in retention of glycosyltransferases in the Golgi; involved in osmotic sensitivity and resistance to aminonitrophenyl propanediol; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0000137 - Golgi cis cisterna [Evidence IDA] [PMID 9430634]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA]; GO_component: GO:0000136 - alpha-1,6-mannosyltransferase complex [Evidence IPI] [PMID 9430634]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0000009 - alpha-1,6-mannosyltransferase activity [Evidence IDA] [PMID 10037752]; GO_function: GO:0000030 - mannosyltransferase activity [Evidence ISS] [PMID 9434768]; GO_process: GO:0006487 - protein N-linked glycosylation [Evidence IDA,IMP] [PMID 9430634]; Anp1p 2898279 ANP1 30034926 ANP1 Sugiyamaella lignohabitans Anp1p XP_018737808.1 2896996 R 796027 CDS AWJ20_2959 30034927 2899279..2900490 B 1 NC_031674.1 Assembly chaperone for the 19S proteasome regulatory particle base; proteasome-interacting protein involved in the assembly of the base subcomplex of the 19S proteasome regulatory particle (RP); null mutants accumulate ubiquitinated Gcn4p and display decreased 26S proteasome stability; interacts with Rpt5p; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 19446323]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 19446323]; GO_component: GO:0000502 - proteasome complex [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0070682 - proteasome regulatory particle assembly [Evidence IGI] [PMID 19412159]; GO_process: GO:0070682 - proteasome regulatory particle assembly [Evidence IGI] [PMID 19446322]; GO_process: GO:0070682 - proteasome regulatory particle assembly [Evidence IGI,IMP] [PMID 19446323]; GO_process: GO:0006511 - ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 17499717]; Rpn14p 2900490 RPN14 30034927 RPN14 Sugiyamaella lignohabitans Rpn14p XP_018737809.1 2899279 D 796027 CDS AWJ20_2960 30034929 complement(join(2900600..2902116,2902488..2902530)) B 1 NC_031674.1 Subunit B of V1 peripheral membrane domain of vacuolar H+-ATPase; an electrogenic proton pump found throughout the endomembrane system; contains nucleotide binding sites; also detected in the cytoplasm; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 18048916]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0033180 - proton-transporting V-type ATPase, V1 domain [Evidence IEA]; GO_component: GO:0033178 - proton-transporting two-sector ATPase complex, catalytic domain [Evidence IEA]; GO_component: GO:0000221 - vacuolar proton-transporting V-type ATPase, V1 domain [Evidence IDA] [PMID 2478556]; GO_component: GO:0000221 - vacuolar proton-transporting V-type ATPase, V1 domain [Evidence IDA] [PMID 2857169]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016820 - hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances [Evidence IEA]; GO_function: GO:0046961 - proton-transporting ATPase activity, rotational mechanism [Evidence IMP] [PMID 2141385]; GO_process: GO:0015991 - ATP hydrolysis coupled proton transport [Evidence IEA]; GO_process: GO:0046034 - ATP metabolic process [Evidence IEA]; GO_process: GO:0006874 - cellular calcium ion homeostasis [Evidence IMP] [PMID 10991947]; GO_process: GO:0006811 - ion transport [Evidence IEA]; GO_process: GO:1902906 - proteasome storage granule assembly [Evidence IMP] [PMID 23690178]; GO_process: GO:0015992 - proton transport [Evidence IEA,IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IMP] [PMID 2141385]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0007035 - vacuolar acidification [Evidence IMP] [PMID 18048916]; GO_process: GO:0007035 - vacuolar acidification [Evidence IMP] [PMID 2141385]; H(+)-transporting V1 sector ATPase subunit B 2902530 VMA2 30034929 VMA2 Sugiyamaella lignohabitans H(+)-transporting V1 sector ATPase subunit B XP_018737810.1 2900600 R 796027 CDS AWJ20_2961 30034930 complement(2902932..2904947) B 1 NC_031674.1 uncharacterized protein 2904947 30034930 AWJ20_2961 Sugiyamaella lignohabitans uncharacterized protein XP_018737811.1 2902932 R 796027 CDS AWJ20_2962 30034931 complement(2905406..2905960) B 1 NC_031674.1 Putative Rheb-related GTPase; involved in regulating canavanine resistance and arginine uptake; member of the Ras superfamily of G-proteins; GO_component: GO:0019897 - extrinsic component of plasma membrane [Evidence IGI] [PMID 10753927]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_function: GO:0005525 - GTP binding [Evidence IEA,IEA]; GO_function: GO:0003924 - GTPase activity [Evidence ISS] [PMID 10753927]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006184 - GTP catabolic process [Evidence IEA]; GO_process: GO:0015809 - arginine transport [Evidence IGI,IMP] [PMID 10753927]; GO_process: GO:0015819 - lysine transport [Evidence IMP] [PMID 10753927]; GO_process: GO:0042147 - retrograde transport, endosome to Golgi [Evidence IMP] [PMID 17101785]; GO_process: GO:0007165 - signal transduction [Evidence IEA]; GO_process: GO:0007264 - small GTPase mediated signal transduction [Evidence IEA]; putative GTPase RHB1 2905960 RHB1 30034931 RHB1 Sugiyamaella lignohabitans putative GTPase RHB1 XP_018737812.1 2905406 R 796027 CDS AWJ20_2963 30034932 2909332..2910897 B 1 NC_031674.1 Protein with CoA transferase activity; particularly for CoASH transfer from succinyl-CoA to acetate; has minor acetyl-CoA-hydrolase activity; phosphorylated; required for acetate utilization and for diploid pseudohyphal growth; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 11746603]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 12606555]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0008775 - acetate CoA-transferase activity [Evidence IDA] [PMID 19298859]; GO_function: GO:0003986 - acetyl-CoA hydrolase activity [Evidence IEA]; GO_function: GO:0003986 - acetyl-CoA hydrolase activity [Evidence IDA] [PMID 12606555]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_process: GO:0006083 - acetate metabolic process [Evidence IMP] [PMID 8841387]; GO_process: GO:0006084 - acetyl-CoA metabolic process [Evidence IEA]; Ach1p 2910897 ACH1 30034932 ACH1 Sugiyamaella lignohabitans Ach1p XP_018737813.1 2909332 D 796027 CDS AWJ20_2964 30034933 complement(2910938..2911894) B 1 NC_031674.1 uncharacterized protein 2911894 30034933 AWJ20_2964 Sugiyamaella lignohabitans uncharacterized protein XP_018737814.1 2910938 R 796027 CDS AWJ20_2965 30034934 2913487..2913807 B 1 NC_031674.1 Uridine/cytidine kinase; component of the pyrimidine ribonucleotide salvage pathway that converts uridine into UMP and cytidine into CMP; involved in the pyrimidine deoxyribonucleotide salvage pathway, converting deoxycytidine into dCMP; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016301 - kinase activity [Evidence IEA,IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016773 - phosphotransferase activity, alcohol group as acceptor [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0004849 - uridine kinase activity [Evidence IEA,IEA]; GO_function: GO:0004849 - uridine kinase activity [Evidence IMP] [PMID 10501935]; GO_process: GO:0044211 - CTP salvage [Evidence IEA]; GO_process: GO:0044206 - UMP salvage [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; GO_process: GO:0008655 - pyrimidine-containing compound salvage [Evidence IGI,IMP] [PMID 11872485]; uridine kinase URK1 2913807 URK1 30034934 URK1 Sugiyamaella lignohabitans uridine kinase URK1 XP_018737815.1 2913487 D 796027 CDS AWJ20_2966 30034935 2914388..2915056 B 1 NC_031674.1 uncharacterized protein 2915056 30034935 AWJ20_2966 Sugiyamaella lignohabitans uncharacterized protein XP_018737816.1 2914388 D 796027 CDS AWJ20_2967 30034936 complement(2915974..2918526) B 1 NC_031674.1 Low-affinity vacuolar phosphate transporter; exports phosphate from the vacuolar lumen to the cytosol; regulates phosphate and polyphosphate metabolism; acts upstream of Pho81p in regulation of the PHO pathway; deletion of pho84, pho87, pho89, pho90, and pho91 causes synthetic lethality; transcription independent of Pi and Pho4p activity; overexpression results in vigorous growth; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 17804816]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0015169 - glycerol-3-phosphate transmembrane transporter activity [Evidence IGI,IMP] [PMID 20133652]; GO_function: GO:0005315 - inorganic phosphate transmembrane transporter activity [Evidence IGI] [PMID 11779791]; GO_function: GO:0005315 - inorganic phosphate transmembrane transporter activity [Evidence IMP] [PMID 12581367]; GO_function: GO:0005215 - transporter activity [Evidence IEA]; GO_process: GO:0015794 - glycerol-3-phosphate transport [Evidence IGI,IMP] [PMID 20133652]; GO_process: GO:0006817 - phosphate ion transport [Evidence IEA]; GO_process: GO:0006817 - phosphate ion transport [Evidence IGI] [PMID 11779791]; GO_process: GO:0006797 - polyphosphate metabolic process [Evidence IMP] [PMID 17804816]; GO_process: GO:2000185 - regulation of phosphate transmembrane transport [Evidence IGI] [PMID 12821119]; GO_process: GO:0006814 - sodium ion transport [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Pho91p 2918526 PHO91 30034936 PHO91 Sugiyamaella lignohabitans Pho91p XP_018737817.1 2915974 R 796027 CDS AWJ20_2968 30034937 2916221..2916544 B 1 NC_031674.1 uncharacterized protein 2916544 30034937 AWJ20_2968 Sugiyamaella lignohabitans uncharacterized protein XP_018737818.1 2916221 D 796027 CDS AWJ20_2969 30034938 2917094..2917462 B 1 NC_031674.1 uncharacterized protein 2917462 30034938 AWJ20_2969 Sugiyamaella lignohabitans uncharacterized protein XP_018737819.1 2917094 D 796027 CDS AWJ20_2970 30034940 2921315..2924077 B 1 NC_031674.1 Regulatory subunit of trehalose-6-phosphate synthase/phosphatase; involved in synthesis of storage carbohydrate trehalose; expression is induced by stress conditions and repressed by the Ras-cAMP pathway; TPS3 has a paralog, TSL1, that arose from the whole genome duplication; GO_component: GO:0005946 - alpha,alpha-trehalose-phosphate synthase complex (UDP-forming) [Evidence IGI,IMP,IPI] [PMID 9837904]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_function: GO:0003825 - alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity [Evidence IMP,ISS] [PMID 9837904]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0030234 - enzyme regulator activity [Evidence IMP,ISS] [PMID 9837904]; GO_function: GO:0004805 - trehalose-phosphatase activity [Evidence IGI] [PMID 9837904]; GO_process: GO:0005992 - trehalose biosynthetic process [Evidence IEA]; GO_process: GO:0005992 - trehalose biosynthetic process [Evidence IGI,IMP,IPI] [PMID 9837904]; Tps3p 2924077 TPS3 30034940 TPS3 Sugiyamaella lignohabitans Tps3p XP_018737820.1 2921315 D 796027 CDS AWJ20_2971 30034941 complement(2927716..2928543) B 1 NC_031674.1 C-terminal domain kinase I (CTDK-I) gamma subunit (predicted) 2928543 30034941 AWJ20_2971 Sugiyamaella lignohabitans C-terminal domain kinase I (CTDK-I) gamma subunit (predicted) XP_018737821.1 2927716 R 796027 CDS AWJ20_2972 30034942 2928940..2929404 B 1 NC_031674.1 Translation initiation factor eIF1A; essential protein that forms a complex with Sui1p (eIF1) and the 40S ribosomal subunit and scans for the start codon; C-terminus associates with Fun12p (eIF5B); N terminus interacts with eIF2 and eIF3; GO_component: GO:0016282 - eukaryotic 43S preinitiation complex [Evidence IDA] [PMID 16380131]; GO_component: GO:0033290 - eukaryotic 48S preinitiation complex [Evidence IDA] [PMID 17242201]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003725 - double-stranded RNA binding [Evidence IDA] [PMID 17673174]; GO_function: GO:0043024 - ribosomal small subunit binding [Evidence IDA] [PMID 17434125]; GO_function: GO:0003743 - translation initiation factor activity [Evidence IEA,IEA]; GO_function: GO:0003743 - translation initiation factor activity [Evidence IDA] [PMID 12008673]; GO_function: GO:0031369 - translation initiation factor binding [Evidence IDA,IPI] [PMID 10982835]; GO_process: GO:0001732 - formation of translation initiation complex [Evidence IMP] [PMID 16461768]; GO_process: GO:0001732 - formation of translation initiation complex [Evidence IGI] [PMID 17242201]; GO_process: GO:0001731 - formation of translation preinitiation complex [Evidence IDA] [PMID 12008673]; GO_process: GO:0001731 - formation of translation preinitiation complex [Evidence IMP] [PMID 12514125]; GO_process: GO:0001731 - formation of translation preinitiation complex [Evidence IDA] [PMID 15664195]; GO_process: GO:0001731 - formation of translation preinitiation complex [Evidence IMP] [PMID 15838098]; GO_process: GO:0001731 - formation of translation preinitiation complex [Evidence IDA] [PMID 17434125]; GO_process: GO:0006412 - translation [Evidence IEA]; GO_process: GO:0006413 - translational initiation [Evidence IEA,IEA]; Tif11p 2929404 TIF11 30034942 TIF11 Sugiyamaella lignohabitans Tif11p XP_018737822.1 2928940 D 796027 CDS AWJ20_2973 30034943 2934110..2934871 B 1 NC_031674.1 Endonuclease involved in DNA recombination and repair; subunit of a complex, with Slx4p, that hydrolyzes 5' branches from duplex DNA in response to stalled or converging replication forks; function overlaps with that of Sgs1p-Top3p; GO_component: GO:0033557 - Slx1-Slx4 complex [Evidence IEA,IEA]; GO_component: GO:0033557 - Slx1-Slx4 complex [Evidence IPI] [PMID 12832395]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IC] [PMID 12832395]; GO_function: GO:0017108 - 5'-flap endonuclease activity [Evidence IEA,IEA]; GO_function: GO:0017108 - 5'-flap endonuclease activity [Evidence IDA] [PMID 12832395]; GO_function: GO:0004519 - endonuclease activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004518 - nuclease activity [Evidence IEA]; GO_process: GO:0000737 - DNA catabolic process, endonucleolytic [Evidence IEA,IEA]; GO_process: GO:0006310 - DNA recombination [Evidence IEA,IEA]; GO_process: GO:0006281 - DNA repair [Evidence IEA,IEA,IEA]; GO_process: GO:0006261 - DNA-dependent DNA replication [Evidence IGI] [PMID 12832395]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0090305 - nucleic acid phosphodiester bond hydrolysis [Evidence IEA]; Slx1p 2934871 SLX1 30034943 SLX1 Sugiyamaella lignohabitans Slx1p XP_018737823.1 2934110 D 796027 CDS AWJ20_2974 30034944 complement(2935023..2936225) B 1 NC_031674.1 uncharacterized protein 2936225 30034944 AWJ20_2974 Sugiyamaella lignohabitans uncharacterized protein XP_018737824.1 2935023 R 796027 CDS AWJ20_2975 30034945 complement(2937134..2940013) B 1 NC_031674.1 Glucosidase II catalytic subunit; required for normal cell wall synthesis; mutations in rot2 suppress tor2 mutations, and are synthetically lethal with rot1 mutations; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA,IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence ISS] [PMID 8910335]; GO_component: GO:0005788 - endoplasmic reticulum lumen [Evidence IDA] [PMID 16373354]; GO_component: GO:0017177 - glucosidase II complex [Evidence IPI] [PMID 16373354]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0030246 - carbohydrate binding [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0033919 - glucan 1,3-alpha-glucosidase activity [Evidence IEA]; GO_function: GO:0033919 - glucan 1,3-alpha-glucosidase activity [Evidence IMP] [PMID 16373354]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016798 - hydrolase activity, acting on glycosyl bonds [Evidence IEA]; GO_function: GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]; GO_process: GO:0005975 - carbohydrate metabolic process [Evidence IEA]; GO_process: GO:0009272 - fungal-type cell wall biogenesis [Evidence IMP] [PMID 9430631]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; glucan 1,3-alpha-glucosidase ROT2 2940013 ROT2 30034945 ROT2 Sugiyamaella lignohabitans glucan 1,3-alpha-glucosidase ROT2 XP_018737825.1 2937134 R 796027 CDS AWJ20_2976 30034946 2941719..2944265 B 1 NC_031674.1 Oligopeptide transporter; member of the OPT family, with potential orthologs in S. pombe and C. albicans; also plays a role in formation of mature vacuoles; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0005887 - integral component of plasma membrane [Evidence IC] [PMID 9643541]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_function: GO:0015198 - oligopeptide transporter activity [Evidence IDA,ISS] [PMID 9643541]; GO_process: GO:0006857 - oligopeptide transport [Evidence IDA,ISS] [PMID 9643541]; GO_process: GO:0015833 - peptide transport [Evidence IEA]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0042144 - vacuole fusion, non-autophagic [Evidence IMP] [PMID 19767828]; Opt2p 2944265 OPT2 30034946 OPT2 Sugiyamaella lignohabitans Opt2p XP_018737826.1 2941719 D 796027 CDS AWJ20_2977 30034947 2944698..2945660 B 1 NC_031674.1 3-ketosphinganine reductase; catalyzes the second step in phytosphingosine synthesis; essential for growth in the absence of exogenous dihydrosphingosine or phytosphingosine; localized to lipid droplets; member of short chain dehydrogenase/reductase protein family; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 11914276]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 14562095]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0005811 - lipid particle [Evidence IDA] [PMID 24868093]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IDA] [PMID 16407407]; GO_function: GO:0047560 - 3-dehydrosphinganine reductase activity [Evidence IEA]; GO_function: GO:0047560 - 3-dehydrosphinganine reductase activity [Evidence IDA] [PMID 9804843]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_process: GO:0006666 - 3-keto-sphinganine metabolic process [Evidence IDA] [PMID 9804843]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; GO_process: GO:0030148 - sphingolipid biosynthetic process [Evidence IDA,IMP,ISS] [PMID 9804843]; GO_process: GO:0006665 - sphingolipid metabolic process [Evidence IEA,IEA]; 3-dehydrosphinganine reductase 2945660 TSC10 30034947 TSC10 Sugiyamaella lignohabitans 3-dehydrosphinganine reductase XP_018737827.1 2944698 D 796027 CDS AWJ20_2978 30034948 2946345..2946968 B 1 NC_031674.1 Mitochondrial ribosomal protein of the large subunit; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0005762 - mitochondrial large ribosomal subunit [Evidence IPI] [PMID 12392552]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA,IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IPI] [PMID 12392552]; GO_process: GO:0000002 - mitochondrial genome maintenance [Evidence IMP] [PMID 2183197]; GO_process: GO:0032543 - mitochondrial translation [Evidence IC] [PMID 12392552]; GO_process: GO:0006412 - translation [Evidence IEA]; mitochondrial 54S ribosomal protein YmL8 2946968 MRPL8 30034948 MRPL8 Sugiyamaella lignohabitans mitochondrial 54S ribosomal protein YmL8 XP_018737828.1 2946345 D 796027 CDS AWJ20_2979 30034949 2947568..2951869 B 1 NC_031674.1 Interacts with Trm7p for 2'-O-methylation of C32 of substrate tRNAs; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm; non-essential gene; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0008033 - tRNA processing [Evidence IEA]; Trm732p 2951869 TRM732 30034949 TRM732 Sugiyamaella lignohabitans Trm732p XP_018737829.1 2947568 D 796027 CDS AWJ20_2980 30034951 complement(2951952..2953331) B 1 NC_031674.1 eukaryotic translation initiation factor 3 subunit 6 2953331 30034951 AWJ20_2980 Sugiyamaella lignohabitans eukaryotic translation initiation factor 3 subunit 6 XP_018737830.1 2951952 R 796027 CDS AWJ20_2981 30034952 complement(2955281..2956075) B 1 NC_031674.1 Cytoplasmic heavy chain dynein; microtubule motor protein; member of the AAA+ protein family, required for anaphase spindle elongation; involved in spindle assembly, chromosome movement, and spindle orientation during cell division, targeted to microtubule tips by Pac1p; motility along microtubules inhibited by She1p; GO_component: GO:0000235 - astral microtubule [Evidence IDA] [PMID 16580990]; GO_component: GO:0005938 - cell cortex [Evidence IDA] [PMID 15642746]; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005868 - cytoplasmic dynein complex [Evidence IPI] [PMID 9658168]; GO_component: GO:0005881 - cytoplasmic microtubule [Evidence IDA] [PMID 12566428]; GO_component: GO:0005881 - cytoplasmic microtubule [Evidence IDA] [PMID 15965467]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA,IEA]; GO_component: GO:0030286 - dynein complex [Evidence IEA,IEA]; GO_component: GO:0005874 - microtubule [Evidence IEA]; GO_component: GO:0005816 - spindle pole body [Evidence IDA] [PMID 16580990]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016887 - ATPase activity [Evidence IEA]; GO_function: GO:0003777 - microtubule motor activity [Evidence IEA]; GO_function: GO:0003777 - microtubule motor activity [Evidence IDA] [PMID 16873064]; GO_function: GO:0003774 - motor activity [Evidence IEA]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0040001 - establishment of mitotic spindle localization [Evidence IMP] [PMID 21633107]; GO_process: GO:0000132 - establishment of mitotic spindle orientation [Evidence IGI,IMP] [PMID 9281582]; GO_process: GO:0000741 - karyogamy [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA,IEA]; GO_process: GO:0007018 - microtubule-based movement [Evidence IEA]; GO_process: GO:0000070 - mitotic sister chromatid segregation [Evidence IGI] [PMID 7860634]; GO_process: GO:0030473 - nuclear migration along microtubule [Evidence IGI,IMP] [PMID 9201714]; dynein heavy chain 2956075 DYN1 30034952 DYN1 Sugiyamaella lignohabitans dynein heavy chain XP_018737831.1 2955281 R 796027 CDS AWJ20_2982 30034953 complement(2956372..2959422) B 1 NC_031674.1 Cytoplasmic heavy chain dynein; microtubule motor protein; member of the AAA+ protein family, required for anaphase spindle elongation; involved in spindle assembly, chromosome movement, and spindle orientation during cell division, targeted to microtubule tips by Pac1p; motility along microtubules inhibited by She1p; GO_component: GO:0000235 - astral microtubule [Evidence IDA] [PMID 16580990]; GO_component: GO:0005938 - cell cortex [Evidence IDA] [PMID 15642746]; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005868 - cytoplasmic dynein complex [Evidence IPI] [PMID 9658168]; GO_component: GO:0005881 - cytoplasmic microtubule [Evidence IDA] [PMID 12566428]; GO_component: GO:0005881 - cytoplasmic microtubule [Evidence IDA] [PMID 15965467]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA,IEA]; GO_component: GO:0030286 - dynein complex [Evidence IEA,IEA]; GO_component: GO:0005874 - microtubule [Evidence IEA]; GO_component: GO:0005816 - spindle pole body [Evidence IDA] [PMID 16580990]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016887 - ATPase activity [Evidence IEA]; GO_function: GO:0003777 - microtubule motor activity [Evidence IEA]; GO_function: GO:0003777 - microtubule motor activity [Evidence IDA] [PMID 16873064]; GO_function: GO:0003774 - motor activity [Evidence IEA]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0040001 - establishment of mitotic spindle localization [Evidence IMP] [PMID 21633107]; GO_process: GO:0000132 - establishment of mitotic spindle orientation [Evidence IGI,IMP] [PMID 9281582]; GO_process: GO:0000741 - karyogamy [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA,IEA]; GO_process: GO:0007018 - microtubule-based movement [Evidence IEA]; GO_process: GO:0000070 - mitotic sister chromatid segregation [Evidence IGI] [PMID 7860634]; GO_process: GO:0030473 - nuclear migration along microtubule [Evidence IGI,IMP] [PMID 9201714]; dynein heavy chain 2959422 DYN1 30034953 DYN1 Sugiyamaella lignohabitans dynein heavy chain XP_018737832.1 2956372 R 796027 CDS AWJ20_2983 30034954 complement(2959478..2961640) B 1 NC_031674.1 Cytoplasmic heavy chain dynein; microtubule motor protein; member of the AAA+ protein family, required for anaphase spindle elongation; involved in spindle assembly, chromosome movement, and spindle orientation during cell division, targeted to microtubule tips by Pac1p; motility along microtubules inhibited by She1p; GO_component: GO:0000235 - astral microtubule [Evidence IDA] [PMID 16580990]; GO_component: GO:0005938 - cell cortex [Evidence IDA] [PMID 15642746]; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005868 - cytoplasmic dynein complex [Evidence IPI] [PMID 9658168]; GO_component: GO:0005881 - cytoplasmic microtubule [Evidence IDA] [PMID 12566428]; GO_component: GO:0005881 - cytoplasmic microtubule [Evidence IDA] [PMID 15965467]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA,IEA]; GO_component: GO:0030286 - dynein complex [Evidence IEA,IEA]; GO_component: GO:0005874 - microtubule [Evidence IEA]; GO_component: GO:0005816 - spindle pole body [Evidence IDA] [PMID 16580990]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016887 - ATPase activity [Evidence IEA]; GO_function: GO:0003777 - microtubule motor activity [Evidence IEA]; GO_function: GO:0003777 - microtubule motor activity [Evidence IDA] [PMID 16873064]; GO_function: GO:0003774 - motor activity [Evidence IEA]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0040001 - establishment of mitotic spindle localization [Evidence IMP] [PMID 21633107]; GO_process: GO:0000132 - establishment of mitotic spindle orientation [Evidence IGI,IMP] [PMID 9281582]; GO_process: GO:0000741 - karyogamy [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA,IEA]; GO_process: GO:0007018 - microtubule-based movement [Evidence IEA]; GO_process: GO:0000070 - mitotic sister chromatid segregation [Evidence IGI] [PMID 7860634]; GO_process: GO:0030473 - nuclear migration along microtubule [Evidence IGI,IMP] [PMID 9201714]; dynein heavy chain 2961640 DYN1 30034954 DYN1 Sugiyamaella lignohabitans dynein heavy chain XP_018737833.1 2959478 R 796027 CDS AWJ20_2984 30034955 complement(2962595..2966602) B 1 NC_031674.1 Cytoplasmic heavy chain dynein; microtubule motor protein; member of the AAA+ protein family, required for anaphase spindle elongation; involved in spindle assembly, chromosome movement, and spindle orientation during cell division, targeted to microtubule tips by Pac1p; motility along microtubules inhibited by She1p; GO_component: GO:0000235 - astral microtubule [Evidence IDA] [PMID 16580990]; GO_component: GO:0005938 - cell cortex [Evidence IDA] [PMID 15642746]; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005868 - cytoplasmic dynein complex [Evidence IPI] [PMID 9658168]; GO_component: GO:0005881 - cytoplasmic microtubule [Evidence IDA] [PMID 12566428]; GO_component: GO:0005881 - cytoplasmic microtubule [Evidence IDA] [PMID 15965467]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA,IEA]; GO_component: GO:0030286 - dynein complex [Evidence IEA,IEA]; GO_component: GO:0005874 - microtubule [Evidence IEA]; GO_component: GO:0005816 - spindle pole body [Evidence IDA] [PMID 16580990]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016887 - ATPase activity [Evidence IEA]; GO_function: GO:0003777 - microtubule motor activity [Evidence IEA]; GO_function: GO:0003777 - microtubule motor activity [Evidence IDA] [PMID 16873064]; GO_function: GO:0003774 - motor activity [Evidence IEA]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0040001 - establishment of mitotic spindle localization [Evidence IMP] [PMID 21633107]; GO_process: GO:0000132 - establishment of mitotic spindle orientation [Evidence IGI,IMP] [PMID 9281582]; GO_process: GO:0000741 - karyogamy [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA,IEA]; GO_process: GO:0007018 - microtubule-based movement [Evidence IEA]; GO_process: GO:0000070 - mitotic sister chromatid segregation [Evidence IGI] [PMID 7860634]; GO_process: GO:0030473 - nuclear migration along microtubule [Evidence IGI,IMP] [PMID 9201714]; dynein heavy chain 2966602 DYN1 30034955 DYN1 Sugiyamaella lignohabitans dynein heavy chain XP_018737834.1 2962595 R 796027 CDS AWJ20_2985 30034956 complement(2966746..2968479) B 1 NC_031674.1 Cytoplasmic heavy chain dynein; microtubule motor protein; member of the AAA+ protein family, required for anaphase spindle elongation; involved in spindle assembly, chromosome movement, and spindle orientation during cell division, targeted to microtubule tips by Pac1p; motility along microtubules inhibited by She1p; GO_component: GO:0000235 - astral microtubule [Evidence IDA] [PMID 16580990]; GO_component: GO:0005938 - cell cortex [Evidence IDA] [PMID 15642746]; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005868 - cytoplasmic dynein complex [Evidence IPI] [PMID 9658168]; GO_component: GO:0005881 - cytoplasmic microtubule [Evidence IDA] [PMID 12566428]; GO_component: GO:0005881 - cytoplasmic microtubule [Evidence IDA] [PMID 15965467]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA,IEA]; GO_component: GO:0030286 - dynein complex [Evidence IEA,IEA]; GO_component: GO:0005874 - microtubule [Evidence IEA]; GO_component: GO:0005816 - spindle pole body [Evidence IDA] [PMID 16580990]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016887 - ATPase activity [Evidence IEA]; GO_function: GO:0003777 - microtubule motor activity [Evidence IEA]; GO_function: GO:0003777 - microtubule motor activity [Evidence IDA] [PMID 16873064]; GO_function: GO:0003774 - motor activity [Evidence IEA]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0040001 - establishment of mitotic spindle localization [Evidence IMP] [PMID 21633107]; GO_process: GO:0000132 - establishment of mitotic spindle orientation [Evidence IGI,IMP] [PMID 9281582]; GO_process: GO:0000741 - karyogamy [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA,IEA]; GO_process: GO:0007018 - microtubule-based movement [Evidence IEA]; GO_process: GO:0000070 - mitotic sister chromatid segregation [Evidence IGI] [PMID 7860634]; GO_process: GO:0030473 - nuclear migration along microtubule [Evidence IGI,IMP] [PMID 9201714]; dynein heavy chain 2968479 DYN1 30034956 DYN1 Sugiyamaella lignohabitans dynein heavy chain XP_018737835.1 2966746 R 796027 CDS AWJ20_2986 30034957 complement(2970246..2971265) B 1 NC_031674.1 uncharacterized protein 2971265 30034957 AWJ20_2986 Sugiyamaella lignohabitans uncharacterized protein XP_018737836.1 2970246 R 796027 CDS AWJ20_2987 30034958 2972204..2973478 B 1 NC_031674.1 F-Box protein involved in proteasome-dependent degradation of Aah1p; involved in proteasome-dependent degradation of Aah1p during entry of cells into quiescence; interacts with Skp1; GO_component: GO:0019005 - SCF ubiquitin ligase complex [Evidence IDA] [PMID 11283612]; GO_component: GO:0019005 - SCF ubiquitin ligase complex [Evidence IMP,IPI,ISS] [PMID 17517885]; GO_component: GO:0019005 - SCF ubiquitin ligase complex [Evidence IDA] [PMID 19882662]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence IMP,ISS] [PMID 17517885]; GO_process: GO:0031146 - SCF-dependent proteasomal ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 16677311]; GO_process: GO:0031146 - SCF-dependent proteasomal ubiquitin-dependent protein catabolic process [Evidence IMP,ISS] [PMID 17517885]; GO_process: GO:0016567 - protein ubiquitination [Evidence IEA]; SCF ubiquitin ligase complex subunit SAF1 2973478 SAF1 30034958 SAF1 Sugiyamaella lignohabitans SCF ubiquitin ligase complex subunit SAF1 XP_018737837.1 2972204 D 796027 CDS AWJ20_2988 30034959 complement(2974420..2977425) B 1 NC_031674.1 Essential 107kDa subunit of the exocyst complex; the exocyst mediates polarized targeting and tethering of post-Golgi secretory vesicles to active sites of exocytosis at the plasma membrane prior to SNARE-mediated fusion; involved in assembly of the exocyst complex; required with Sec3p for ER inheritance where it promotes anchoring of the cortical ER at the bud tip; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 11595741]; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 11595741]; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 17717527]; GO_component: GO:0000145 - exocyst [Evidence IDA] [PMID 8978675]; GO_component: GO:0000131 - incipient cellular bud site [Evidence IDA] [PMID 11595741]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 19053807]; GO_component: GO:0005628 - prospore membrane [Evidence IDA] [PMID 24390141]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006893 - Golgi to plasma membrane transport [Evidence IGI,IMP] [PMID 7026045]; GO_process: GO:0048309 - endoplasmic reticulum inheritance [Evidence IMP] [PMID 15583030]; GO_process: GO:0001927 - exocyst assembly [Evidence IMP] [PMID 15583030]; GO_process: GO:0006887 - exocytosis [Evidence IEA]; GO_process: GO:0006887 - exocytosis [Evidence IGI] [PMID 15583030]; GO_process: GO:0006887 - exocytosis [Evidence IMP] [PMID 6996832]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0090522 - vesicle tethering involved in exocytosis [Evidence IC] [PMID 8978675]; Sec5p 2977425 SEC5 30034959 SEC5 Sugiyamaella lignohabitans Sec5p XP_018737838.1 2974420 R 796027 CDS AWJ20_2989 30034960 2978780..2981899 B 1 NC_031674.1 tethering complex subunit PEP3 2981899 PEP3 30034960 PEP3 Sugiyamaella lignohabitans tethering complex subunit PEP3 XP_018737839.1 2978780 D 796027 CDS AWJ20_2990 30034962 2983684..2984886 B 1 NC_031674.1 uncharacterized protein 2984886 30034962 AWJ20_2990 Sugiyamaella lignohabitans uncharacterized protein XP_018737840.1 2983684 D 796027 CDS AWJ20_2991 30034963 2985404..2985805 B 1 NC_031674.1 Acyl-protein thioesterase responsible for depalmitoylation of Gpa1p; green fluorescent protein (GFP)-fusion protein localizes to both the cytoplasm and nucleus and is induced in response to the DNA-damaging agent MMS; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA,IEA]; GO_function: GO:0008474 - palmitoyl-(protein) hydrolase activity [Evidence IDA,IMP,ISS] [PMID 12080046]; GO_process: GO:0006631 - fatty acid metabolic process [Evidence IEA]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0035601 - protein deacylation [Evidence IDA,IMP] [PMID 12080046]; palmitoyl-(protein) hydrolase 2985805 30034963 AWJ20_2991 Sugiyamaella lignohabitans palmitoyl-(protein) hydrolase XP_018737841.1 2985404 D 796027 CDS AWJ20_2992 30034964 2987754..2988950 B 1 NC_031674.1 Subunit of the tRNA splicing endonuclease; tRNA splicing endonuclease is composed of Sen2p, Sen15p, Sen34p, and Sen54p; GO_component: GO:0012505 - endomembrane system [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IEA,IEA]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IDA,IMP] [PMID 12925762]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IDA] [PMID 16407407]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0000214 - tRNA-intron endonuclease complex [Evidence IDA] [PMID 9200603]; GO_function: GO:0000213 - tRNA-intron endonuclease activity [Evidence IDA] [PMID 9200603]; GO_process: GO:0008033 - tRNA processing [Evidence IEA]; GO_process: GO:0000379 - tRNA-type intron splice site recognition and cleavage [Evidence IDA] [PMID 9200603]; Sen54p 2988950 SEN54 30034964 SEN54 Sugiyamaella lignohabitans Sen54p XP_018737842.1 2987754 D 796027 CDS AWJ20_2993 30034965 complement(2989023..2991728) B 1 NC_031674.1 Cytoplasmic class E vacuolar protein sorting (VPS) factor; coordinates deubiquitination in the multivesicular body (MVB) pathway by recruiting Doa4p to endosomes; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 12668726]; GO_component: GO:0005768 - endosome [Evidence IEA,IEA]; GO_component: GO:0005768 - endosome [Evidence IDA] [PMID 12668726]; GO_component: GO:0005768 - endosome [Evidence IDA] [PMID 15935782]; GO_function: GO:0004843 - ubiquitin-specific protease activity [Evidence IDA] [PMID 17446860]; GO_process: GO:0070676 - intralumenal vesicle formation [Evidence IGI,IMP] [PMID 23444383]; GO_process: GO:0016579 - protein deubiquitination [Evidence IGI,IPI] [PMID 15326198]; GO_process: GO:0043328 - protein targeting to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway [Evidence IMP] [PMID 14523026]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0007584 - response to nutrient [Evidence IMP] [PMID 8649366]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0006511 - ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 12062418]; GO_process: GO:0007034 - vacuolar transport [Evidence IMP] [PMID 12668726]; Bro1p 2991728 BRO1 30034965 BRO1 Sugiyamaella lignohabitans Bro1p XP_018737843.1 2989023 R 796027 CDS AWJ20_2994 30034966 2992883..2993689 B 1 NC_031674.1 Component of GID Complex that confers ubiquitin ligase (U3) activity; necessary for polyubiquitination and degradation of the gluconeogenic enzyme fructose-1,6-bisphosphatase; forms dimer with Fyv10p that is then recruited to GID Complex by Gid8p; also required for sporulation; conserved protein that has a degenerate RING finger domain; GO_component: GO:0034657 - GID complex [Evidence IDA] [PMID 12686616]; GO_component: GO:0034657 - GID complex [Evidence IDA] [PMID 16872538]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 12686616]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence IDA,IMP] [PMID 18508925]; GO_process: GO:0007126 - meiotic nuclear division [Evidence IEA]; GO_process: GO:0045721 - negative regulation of gluconeogenesis [Evidence IMP] [PMID 12686616]; GO_process: GO:0043161 - proteasome-mediated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 12686616]; GO_process: GO:0042787 - protein ubiquitination involved in ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 12686616]; GO_process: GO:0030435 - sporulation resulting in formation of a cellular spore [Evidence IEA]; ubiquitin-protein ligase RMD5 2993689 RMD5 30034966 RMD5 Sugiyamaella lignohabitans ubiquitin-protein ligase RMD5 XP_018737844.1 2992883 D 796027 CDS AWJ20_2995 30034967 complement(2993912..2994277) B 1 NC_031674.1 Elongin C, conserved among eukaryotes; forms a complex with Cul3p that polyubiquitylates monoubiquitylated RNA polymerase II to trigger its proteolysis; plays a role in global genomic repair; GO_component: GO:0031463 - Cul3-RING ubiquitin ligase complex [Evidence IPI] [PMID 16675952]; GO_component: GO:0031463 - Cul3-RING ubiquitin ligase complex [Evidence IMP] [PMID 17296727]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0070449 - elongin complex [Evidence IPI] [PMID 10430890]; GO_component: GO:0070449 - elongin complex [Evidence IPI] [PMID 10753924]; GO_component: GO:0000113 - nucleotide-excision repair factor 4 complex [Evidence IDA] [PMID 15226437]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence IDA] [PMID 16675952]; GO_process: GO:0070911 - global genome nucleotide-excision repair [Evidence IMP] [PMID 18817898]; GO_process: GO:0042787 - protein ubiquitination involved in ubiquitin-dependent protein catabolic process [Evidence IDA] [PMID 16675952]; GO_process: GO:0042787 - protein ubiquitination involved in ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 16705154]; GO_process: GO:0006511 - ubiquitin-dependent protein catabolic process [Evidence IEA]; elongin C 2994277 ELC1 30034967 ELC1 Sugiyamaella lignohabitans elongin C XP_018737845.1 2993912 R 796027 CDS AWJ20_2996 30034968 2994461..2997058 B 1 NC_031674.1 tethering complex subunit VPS16 2997058 VPS16 30034968 VPS16 Sugiyamaella lignohabitans tethering complex subunit VPS16 XP_018737846.1 2994461 D 796027 CDS AWJ20_2997 30034969 complement(2997169..2997945) B 1 NC_031674.1 Outer kinetochore protein required for chromosome stability; involved in new kinetochore assembly and sister chromatid cohesion; peripheral component of the Ctf19 kinetochore complex that interacts with Ctf19p, Ctf3p, Iml3p and Mif2p; required for the spindle assembly checkpoint; orthologous to human centromere constitutive-associated network (CCAN) subunit CENP-N and fission yeast mis15; GO_component: GO:0005694 - chromosome [Evidence IEA]; GO_component: GO:0000775 - chromosome, centromeric region [Evidence IEA]; GO_component: GO:0000777 - condensed chromosome kinetochore [Evidence IEA]; GO_component: GO:0000942 - condensed nuclear chromosome outer kinetochore [Evidence IDA] [PMID 12589047]; GO_component: GO:0000776 - kinetochore [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0005198 - structural molecule activity [Evidence IMP] [PMID 12589047]; GO_function: GO:0005198 - structural molecule activity [Evidence IMP] [PMID 12642611]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0034508 - centromere complex assembly [Evidence IEA]; GO_process: GO:0007059 - chromosome segregation [Evidence IEA]; GO_process: GO:0007059 - chromosome segregation [Evidence IMP] [PMID 8243998]; GO_process: GO:0007059 - chromosome segregation [Evidence IMP] [PMID 9339342]; GO_process: GO:0034089 - establishment of meiotic sister chromatid cohesion [Evidence IMP] [PMID 19730685]; GO_process: GO:0034087 - establishment of mitotic sister chromatid cohesion [Evidence IMP] [PMID 19730685]; GO_process: GO:0051382 - kinetochore assembly [Evidence IMP] [PMID 12642611]; GO_process: GO:0034090 - maintenance of meiotic sister chromatid cohesion [Evidence IMP] [PMID 14752166]; GO_process: GO:0007126 - meiotic nuclear division [Evidence IEA]; GO_process: GO:0007067 - mitotic nuclear division [Evidence IEA]; GO_process: GO:0071459 - protein localization to chromosome, centromeric region [Evidence IMP] [PMID 16357219]; GO_process: GO:0071173 - spindle assembly checkpoint [Evidence IMP] [PMID 22426531]; Chl4p 2997945 CHL4 30034969 CHL4 Sugiyamaella lignohabitans Chl4p XP_018737847.1 2997169 R 796027 CDS AWJ20_2998 30034970 2999172..3001187 B 1 NC_031674.1 Nucleolar protein; essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis; constituent of 66S pre-ribosomal particles; contains four RNA recognition motifs (RRMs); GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 23212245]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence ISS] [PMID 9312154]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0000463 - maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 8039505]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0042273 - ribosomal large subunit biogenesis [Evidence IMP] [PMID 8039505]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; Nop4p 3001187 NOP4 30034970 NOP4 Sugiyamaella lignohabitans Nop4p XP_018737848.1 2999172 D 796027 CDS AWJ20_2999 30034971 complement(3001322..3003025) B 1 NC_031674.1 tRNA(Ser) Um(44) 2'-O-methyltransferase; involved in maintaining levels of the tRNA-Ser species tS(CGA) and tS(UGA); conserved among metazoans and fungi but there does not appear to be a homolog in plants; TRM44 is a non-essential gene; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0008168 - methyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0016300 - tRNA (uracil) methyltransferase activity [Evidence IDA,IMP] [PMID 18025252]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0032259 - methylation [Evidence IEA]; GO_process: GO:0030488 - tRNA methylation [Evidence IDA,IMP] [PMID 18025252]; GO_process: GO:0008033 - tRNA processing [Evidence IEA]; Trm44p 3003025 TRM44 30034971 TRM44 Sugiyamaella lignohabitans Trm44p XP_018737849.1 3001322 R 796027 CDS AWJ20_3000 30034975 3003613..3004356 B 1 NC_031674.1 Cyclin-dependent kinase; has ten cyclin partners; involved in regulating the cellular response to nutrient levels and environmental conditions and progression through the cell cycle; GO_component: GO:0000307 - cyclin-dependent protein kinase holoenzyme complex [Evidence IPI] [PMID 16611745]; GO_component: GO:0000307 - cyclin-dependent protein kinase holoenzyme complex [Evidence IPI] [PMID 7973730]; GO_component: GO:0000307 - cyclin-dependent protein kinase holoenzyme complex [Evidence IPI] [PMID 7973731]; GO_component: GO:0000307 - cyclin-dependent protein kinase holoenzyme complex [Evidence IPI] [PMID 8108735]; GO_component: GO:0000307 - cyclin-dependent protein kinase holoenzyme complex [Evidence IPI] [PMID 9584169]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9853758]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004693 - cyclin-dependent protein serine/threonine kinase activity [Evidence IEA]; GO_function: GO:0004693 - cyclin-dependent protein serine/threonine kinase activity [Evidence IDA] [PMID 12407105]; GO_function: GO:0004693 - cyclin-dependent protein serine/threonine kinase activity [Evidence IDA] [PMID 19823668]; GO_function: GO:0004693 - cyclin-dependent protein serine/threonine kinase activity [Evidence IDA] [PMID 7973730]; GO_function: GO:0004693 - cyclin-dependent protein serine/threonine kinase activity [Evidence IDA] [PMID 7973731]; GO_function: GO:0004693 - cyclin-dependent protein serine/threonine kinase activity [Evidence IDA] [PMID 8108735]; GO_function: GO:0004693 - cyclin-dependent protein serine/threonine kinase activity [Evidence IDA] [PMID 9584169]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0004672 - protein kinase activity [Evidence IEA]; GO_function: GO:0004672 - protein kinase activity [Evidence IDA] [PMID 16319894]; GO_function: GO:0004674 - protein serine/threonine kinase activity [Evidence IEA,IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016772 - transferase activity, transferring phosphorus-containing groups [Evidence IEA]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IGI,IMP] [PMID 16964260]; GO_process: GO:0031505 - fungal-type cell wall organization [Evidence IGI] [PMID 12077337]; GO_process: GO:0050849 - negative regulation of calcium-mediated signaling [Evidence IGI] [PMID 16455487]; GO_process: GO:0045719 - negative regulation of glycogen biosynthetic process [Evidence IMP] [PMID 9584169]; GO_process: GO:0016242 - negative regulation of macroautophagy [Evidence IMP] [PMID 20417603]; GO_process: GO:0045936 - negative regulation of phosphate metabolic process [Evidence IGI] [PMID 3915785]; GO_process: GO:0043433 - negative regulation of sequence-specific DNA binding transcription factor activity [Evidence IGI] [PMID 12101234]; GO_process: GO:0043433 - negative regulation of sequence-specific DNA binding transcription factor activity [Evidence IMP] [PMID 16455487]; GO_process: GO:0000122 - negative regulation of transcription from RNA polymerase II promoter [Evidence IGI] [PMID 3915785]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; GO_process: GO:0016239 - positive regulation of macroautophagy [Evidence IMP] [PMID 20417603]; GO_process: GO:0006468 - protein phosphorylation [Evidence IEA]; GO_process: GO:0006468 - protein phosphorylation [Evidence IDA] [PMID 16319894]; GO_process: GO:0006468 - protein phosphorylation [Evidence IDA] [PMID 19823668]; GO_process: GO:0006468 - protein phosphorylation [Evidence IDA] [PMID 7973731]; GO_process: GO:0006468 - protein phosphorylation [Evidence IDA] [PMID 8108735]; GO_process: GO:0032878 - regulation of establishment or maintenance of cell polarity [Evidence IGI] [PMID 17853895]; GO_process: GO:0032880 - regulation of protein localization [Evidence IDA] [PMID 8539622]; GO_process: GO:0031647 - regulation of protein stability [Evidence IMP] [PMID 16508019]; GO_process: GO:0031647 - regulation of protein stability [Evidence IGI] [PMID 16611745]; GO_process: GO:0000083 - regulation of transcription involved in G1/S transition of mitotic cell cycle [Evidence IGI] [PMID 15738404]; GO_process: GO:0000083 - regulation of transcription involved in G1/S transition of mitotic cell cycle [Evidence IGI,IMP] [PMID 19823668]; cyclin-dependent serine/threonine-protein kinase PHO85 3004356 PHO85 30034975 PHO85 Sugiyamaella lignohabitans cyclin-dependent serine/threonine-protein kinase PHO85 XP_018737850.1 3003613 D 796027 CDS AWJ20_3001 30034976 3005632..3009741 B 1 NC_031674.1 Subunit of the exocyst complex; the exocyst mediates polarized targeting and tethering of post-Golgi secretory vesicles to sites of exocytosis prior to SNARE-mediated fusion; PtdIns[4,5]P2-binding protein that localizes to exocytic sites in a Rho1p-dependent, actin-independent manner, targeting and anchoring the exocyst to the plasma membrane with Exo70p; direct GTP Rho1p effector; required for ER inheritance; relocalizes away from bud neck upon DNA replication stress; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 11595741]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 22842922]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 9491896]; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 11595741]; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 17717527]; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 22842922]; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 9491896]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0000145 - exocyst [Evidence IDA] [PMID 8978675]; GO_component: GO:0000131 - incipient cellular bud site [Evidence IDA] [PMID 11595741]; GO_component: GO:0000131 - incipient cellular bud site [Evidence IDA] [PMID 9491896]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 19053807]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 9491896]; GO_component: GO:0005628 - prospore membrane [Evidence IDA] [PMID 24390141]; GO_function: GO:0017049 - GTP-Rho binding [Evidence IDA] [PMID 11283608]; GO_function: GO:0017049 - GTP-Rho binding [Evidence IPI] [PMID 11595741]; GO_function: GO:0005546 - phosphatidylinositol-4,5-bisphosphate binding [Evidence IDA] [PMID 18195105]; GO_process: GO:0006893 - Golgi to plasma membrane transport [Evidence IGI,IMP] [PMID 7026045]; GO_process: GO:0048309 - endoplasmic reticulum inheritance [Evidence IMP] [PMID 12960429]; GO_process: GO:0048309 - endoplasmic reticulum inheritance [Evidence IGI,IMP] [PMID 15583030]; GO_process: GO:0001927 - exocyst assembly [Evidence IMP] [PMID 15583030]; GO_process: GO:0051601 - exocyst localization [Evidence IGI] [PMID 17717527]; GO_process: GO:0051601 - exocyst localization [Evidence IGI] [PMID 18946089]; GO_process: GO:0006887 - exocytosis [Evidence IEA]; GO_process: GO:0006887 - exocytosis [Evidence IGI] [PMID 12913108]; GO_process: GO:0006887 - exocytosis [Evidence IDA] [PMID 15772160]; GO_process: GO:0006887 - exocytosis [Evidence IGI] [PMID 17717527]; GO_process: GO:0006887 - exocytosis [Evidence IMP] [PMID 6996832]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0090522 - vesicle tethering involved in exocytosis [Evidence IC] [PMID 8978675]; Sec3p 3009741 SEC3 30034976 SEC3 Sugiyamaella lignohabitans Sec3p XP_018737851.1 3005632 D 796027 CDS AWJ20_3002 30034977 complement(3009932..3010978) B 1 NC_031674.1 Transcription factor TFIIB; a general transcription factor required for transcription initiation and start site selection by RNA polymerase II; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 15888545]; GO_function: GO:0000993 - RNA polymerase II core binding [Evidence IDA,IPI] [PMID 7935466]; GO_function: GO:0017025 - TBP-class protein binding [Evidence IEA]; GO_function: GO:0017025 - TBP-class protein binding [Evidence IDA,IPI] [PMID 15888545]; GO_function: GO:0001129 - TBP-class protein binding RNA polymerase II transcription factor activity involved in preinitiation complex assembly [Evidence IDA,IMP] [PMID 10464320]; GO_function: GO:0001139 - core RNA polymerase II recruiting transcription factor activity [Evidence IDA,IMP] [PMID 10464320]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0006352 - DNA-templated transcription, initiation [Evidence IEA]; GO_process: GO:0051123 - RNA polymerase II transcriptional preinitiation complex assembly [Evidence IDA,IMP] [PMID 10464320]; GO_process: GO:0051123 - RNA polymerase II transcriptional preinitiation complex assembly [Evidence IMP] [PMID 9887099]; GO_process: GO:2000679 - positive regulation of transcription regulatory region DNA binding [Evidence IDA] [PMID 8132551]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA,IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; GO_process: GO:0001113 - transcriptional open complex formation at RNA polymerase II promoter [Evidence IMP] [PMID 19820686]; GO_process: GO:0001174 - transcriptional start site selection at RNA polymerase II promoter [Evidence IMP] [PMID 19820686]; Sua7p 3010978 SUA7 30034977 SUA7 Sugiyamaella lignohabitans Sua7p XP_018737852.1 3009932 R 796027 CDS AWJ20_3003 30034978 3011253..3012803 B 1 NC_031674.1 GTPase that associates with nuclear 60S pre-ribosomes; required for export of 60S ribosomal subunits from the nucleus; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 10684247]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 16803892]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 10684247]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IGI] [PMID 16803892]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 23212245]; GO_function: GO:0005525 - GTP binding [Evidence IEA,IEA]; GO_function: GO:0003924 - GTPase activity [Evidence IDA] [PMID 16803892]; GO_function: GO:0003723 - RNA binding [Evidence IDA] [PMID 16803892]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006364 - rRNA processing [Evidence IMP] [PMID 12089522]; GO_process: GO:0000055 - ribosomal large subunit export from nucleus [Evidence IGI,IMP] [PMID 11583615]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; RNA-binding GTPase NUG1 3012803 NUG1 30034978 NUG1 Sugiyamaella lignohabitans RNA-binding GTPase NUG1 XP_018737853.1 3011253 D 796027 CDS AWJ20_3004 30034979 3013769..3018226 B 1 NC_031674.1 Plasma membrane ATP-binding cassette (ABC) transporter; multidrug transporter actively regulated by Pdr1p; also involved in steroid transport, cation resistance, and cellular detoxification during exponential growth; PDR5 has a paralog, PDR15, that arose from the whole genome duplication; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 12469340]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 8810273]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016887 - ATPase activity [Evidence IEA]; GO_function: GO:0042626 - ATPase activity, coupled to transmembrane movement of substances [Evidence IEA]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_function: GO:0008559 - xenobiotic-transporting ATPase activity [Evidence IDA] [PMID 21207971]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0015893 - drug transport [Evidence TAS] [PMID 11421285]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0046677 - response to antibiotic [Evidence IEA]; GO_process: GO:0046898 - response to cycloheximide [Evidence IEA]; GO_process: GO:0042493 - response to drug [Evidence TAS] [PMID 11421285]; GO_process: GO:0042493 - response to drug [Evidence IMP] [PMID 17881724]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; ATP-binding cassette multidrug transporter PDR5 3018226 PDR5 30034979 PDR5 Sugiyamaella lignohabitans ATP-binding cassette multidrug transporter PDR5 XP_018737854.1 3013769 D 796027 CDS AWJ20_3005 30034980 complement(3018285..3021914) B 1 NC_031674.1 Transcription cofactor; acts through interaction with DNA-bound Snf1p; C-terminal region has a putative leucine zipper motif; potential Cdc28p substrate; SIP3 has a paralog, YSP1, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 22842922]; GO_function: GO:0003712 - transcription cofactor activity [Evidence IDA] [PMID 8127709]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IDA] [PMID 8127709]; Sip3p 3021914 SIP3 30034980 SIP3 Sugiyamaella lignohabitans Sip3p XP_018737855.1 3018285 R 796027 CDS AWJ20_3006 30034981 complement(3022024..3022455) B 1 NC_031674.1 uncharacterized protein 3022455 30034981 AWJ20_3006 Sugiyamaella lignohabitans uncharacterized protein XP_018737856.1 3022024 R 796027 CDS AWJ20_3007 30034982 complement(3023908..3024780) B 1 NC_031674.1 uncharacterized protein 3024780 30034982 AWJ20_3007 Sugiyamaella lignohabitans uncharacterized protein XP_018737857.1 3023908 R 796027 CDS AWJ20_3008 30034983 3027716..3032242 B 1 NC_031674.1 uncharacterized protein 3032242 30034983 AWJ20_3008 Sugiyamaella lignohabitans uncharacterized protein XP_018737858.1 3027716 D 796027 CDS AWJ20_3009 30034984 complement(3032885..3033985) B 1 NC_031674.1 uncharacterized protein 3033985 30034984 AWJ20_3009 Sugiyamaella lignohabitans uncharacterized protein XP_018737859.1 3032885 R 796027 CDS AWJ20_3010 30034986 3034337..3035278 B 1 NC_031674.1 uncharacterized protein 3035278 30034986 AWJ20_3010 Sugiyamaella lignohabitans uncharacterized protein XP_018737860.1 3034337 D 796027 CDS AWJ20_3011 30034987 3039028..3039306 B 1 NC_031674.1 TATA-binding protein; general transcription factor that interacts with other factors to form the preinitiation complex at promoters, essential for viability; GO_component: GO:0070860 - RNA polymerase I core factor complex [Evidence IDA] [PMID 8702872]; GO_component: GO:0070860 - RNA polymerase I core factor complex [Evidence IDA] [PMID 9632758]; GO_component: GO:0000500 - RNA polymerase I upstream activating factor complex [Evidence IDA] [PMID 9632758]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9818719]; GO_component: GO:0005669 - transcription factor TFIID complex [Evidence IDA] [PMID 10788514]; GO_component: GO:0005669 - transcription factor TFIID complex [Evidence IDA] [PMID 15448131]; GO_component: GO:0000126 - transcription factor TFIIIB complex [Evidence IDA] [PMID 1423590]; GO_component: GO:0000126 - transcription factor TFIIIB complex [Evidence IDA] [PMID 1458536]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0008301 - DNA binding, bending [Evidence IDA] [PMID 1736286]; GO_function: GO:0001179 - RNA polymerase I transcription factor binding [Evidence IDA,IPI] [PMID 8895657]; GO_function: GO:0001186 - RNA polymerase I transcription factor recruiting transcription factor activity [Evidence IDA,IPI] [PMID 8895657]; GO_function: GO:0001102 - RNA polymerase II activating transcription factor binding [Evidence IDA,IPI] [PMID 12501245]; GO_function: GO:0000979 - RNA polymerase II core promoter sequence-specific DNA binding [Evidence IDA] [PMID 2677740]; GO_function: GO:0001075 - RNA polymerase II core promoter sequence-specific DNA binding transcription factor activity involved in preinitiation complex assembly [Evidence IC]; GO_function: GO:0001016 - RNA polymerase III regulatory region DNA binding [Evidence IDA] [PMID 8662956]; GO_function: GO:0001026 - TFIIIB-type transcription factor activity [Evidence IC]; GO_function: GO:0003682 - chromatin binding [Evidence IDA] [PMID 19098311]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19158363]; GO_process: GO:0006352 - DNA-templated transcription, initiation [Evidence IEA]; GO_process: GO:0051123 - RNA polymerase II transcriptional preinitiation complex assembly [Evidence IMP] [PMID 12840001]; GO_process: GO:0070898 - RNA polymerase III transcriptional preinitiation complex assembly [Evidence IDA] [PMID 1480467]; GO_process: GO:0042790 - transcription of nuclear large rRNA transcript from RNA polymerase I promoter [Evidence IMP] [PMID 1586947]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; GO_process: GO:0070893 - transposon integration [Evidence IDA] [PMID 10882723]; TATA-binding protein 3039306 SPT15 30034987 SPT15 Sugiyamaella lignohabitans TATA-binding protein XP_018737861.1 3039028 D 796027 CDS AWJ20_3012 30034988 3039447..3039860 B 1 NC_031674.1 TATA-binding protein; general transcription factor that interacts with other factors to form the preinitiation complex at promoters, essential for viability; GO_component: GO:0070860 - RNA polymerase I core factor complex [Evidence IDA] [PMID 8702872]; GO_component: GO:0070860 - RNA polymerase I core factor complex [Evidence IDA] [PMID 9632758]; GO_component: GO:0000500 - RNA polymerase I upstream activating factor complex [Evidence IDA] [PMID 9632758]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9818719]; GO_component: GO:0005669 - transcription factor TFIID complex [Evidence IDA] [PMID 10788514]; GO_component: GO:0005669 - transcription factor TFIID complex [Evidence IDA] [PMID 15448131]; GO_component: GO:0000126 - transcription factor TFIIIB complex [Evidence IDA] [PMID 1423590]; GO_component: GO:0000126 - transcription factor TFIIIB complex [Evidence IDA] [PMID 1458536]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0008301 - DNA binding, bending [Evidence IDA] [PMID 1736286]; GO_function: GO:0001179 - RNA polymerase I transcription factor binding [Evidence IDA,IPI] [PMID 8895657]; GO_function: GO:0001186 - RNA polymerase I transcription factor recruiting transcription factor activity [Evidence IDA,IPI] [PMID 8895657]; GO_function: GO:0001102 - RNA polymerase II activating transcription factor binding [Evidence IDA,IPI] [PMID 12501245]; GO_function: GO:0000979 - RNA polymerase II core promoter sequence-specific DNA binding [Evidence IDA] [PMID 2677740]; GO_function: GO:0001075 - RNA polymerase II core promoter sequence-specific DNA binding transcription factor activity involved in preinitiation complex assembly [Evidence IC]; GO_function: GO:0001016 - RNA polymerase III regulatory region DNA binding [Evidence IDA] [PMID 8662956]; GO_function: GO:0001026 - TFIIIB-type transcription factor activity [Evidence IC]; GO_function: GO:0003682 - chromatin binding [Evidence IDA] [PMID 19098311]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19158363]; GO_process: GO:0006352 - DNA-templated transcription, initiation [Evidence IEA]; GO_process: GO:0051123 - RNA polymerase II transcriptional preinitiation complex assembly [Evidence IMP] [PMID 12840001]; GO_process: GO:0070898 - RNA polymerase III transcriptional preinitiation complex assembly [Evidence IDA] [PMID 1480467]; GO_process: GO:0042790 - transcription of nuclear large rRNA transcript from RNA polymerase I promoter [Evidence IMP] [PMID 1586947]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; GO_process: GO:0070893 - transposon integration [Evidence IDA] [PMID 10882723]; TATA-binding protein 3039860 SPT15 30034988 SPT15 Sugiyamaella lignohabitans TATA-binding protein XP_018737862.1 3039447 D 796027 CDS AWJ20_3013 30034989 3040674..3042521 B 1 NC_031674.1 uncharacterized protein 3042521 30034989 AWJ20_3013 Sugiyamaella lignohabitans uncharacterized protein XP_018737863.1 3040674 D 796027 CDS AWJ20_3014 30034990 3043558..3044511 B 1 NC_031674.1 uncharacterized protein 3044511 30034990 AWJ20_3014 Sugiyamaella lignohabitans uncharacterized protein XP_018737864.1 3043558 D 796027 CDS AWJ20_3015 30034991 complement(3045043..3046092) B 1 NC_031674.1 Mitochondrial alcohol dehydrogenase isozyme III; involved in the shuttling of mitochondrial NADH to the cytosol under anaerobic conditions and ethanol production; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA]; GO_component: GO:0005759 - mitochondrial matrix [Evidence IDA] [PMID 3550419]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0004022 - alcohol dehydrogenase (NAD) activity [Evidence IEA]; GO_function: GO:0004022 - alcohol dehydrogenase (NAD) activity [Evidence IDA] [PMID 3550419]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0006116 - NADH oxidation [Evidence IDA] [PMID 3546317]; GO_process: GO:0000947 - amino acid catabolic process to alcohol via Ehrlich pathway [Evidence IGI] [PMID 12499363]; GO_process: GO:0006113 - fermentation [Evidence ISS] [PMID 3550419]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; alcohol dehydrogenase ADH3 3046092 ADH3 30034991 ADH3 Sugiyamaella lignohabitans alcohol dehydrogenase ADH3 XP_018737865.1 3045043 R 796027 CDS AWJ20_3016 30034992 3048554..3050608 B 1 NC_031674.1 uncharacterized protein 3050608 30034992 AWJ20_3016 Sugiyamaella lignohabitans uncharacterized protein XP_018737866.1 3048554 D 796027 CDS AWJ20_3017 30034993 3051772..3053619 B 1 NC_031674.1 uncharacterized protein 3053619 30034993 AWJ20_3017 Sugiyamaella lignohabitans uncharacterized protein XP_018737867.1 3051772 D 796027 CDS AWJ20_3018 30034994 complement(3053650..3057870) B 1 NC_031674.1 Alpha aminoadipate reductase; catalyzes the reduction of alpha-aminoadipate to alpha-aminoadipate 6-semialdehyde, which is the fifth step in biosynthesis of lysine; activation requires posttranslational phosphopantetheinylation by Lys5p; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence NAS] [PMID 3928261]; GO_function: GO:0004043 - L-aminoadipate-semialdehyde dehydrogenase activity [Evidence IEA,IEA]; GO_function: GO:0004043 - L-aminoadipate-semialdehyde dehydrogenase activity [Evidence IDA] [PMID 10320345]; GO_function: GO:0004043 - L-aminoadipate-semialdehyde dehydrogenase activity [Evidence IMP] [PMID 3023949]; GO_function: GO:0004043 - L-aminoadipate-semialdehyde dehydrogenase activity [Evidence IMP] [PMID 4401608]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0031177 - phosphopantetheine binding [Evidence IEA]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0009085 - lysine biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0019878 - lysine biosynthetic process via aminoadipic acid [Evidence IEA]; GO_process: GO:0019878 - lysine biosynthetic process via aminoadipic acid [Evidence IDA] [PMID 10320345]; GO_process: GO:0019878 - lysine biosynthetic process via aminoadipic acid [Evidence IMP] [PMID 3023949]; GO_process: GO:0019878 - lysine biosynthetic process via aminoadipic acid [Evidence IMP] [PMID 4401608]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; L-aminoadipate-semialdehyde dehydrogenase 3057870 LYS2 30034994 LYS2 Sugiyamaella lignohabitans L-aminoadipate-semialdehyde dehydrogenase XP_018737868.1 3053650 R 796027 CDS AWJ20_3019 30034995 3059321..3061285 B 1 NC_031674.1 Subunit of CCR4-NOT global transcriptional regulator; involved intranscription initiation and elongation and in mRNA degradation; conserved lysine in human homolog of Not3p and Not5p is mutated in cancers; GO_component: GO:0030015 - CCR4-NOT core complex [Evidence IPI] [PMID 10490603]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11889048]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence IMP] [PMID 16926149]; GO_process: GO:0000289 - nuclear-transcribed mRNA poly(A) tail shortening [Evidence IDA] [PMID 11889048]; GO_process: GO:0032968 - positive regulation of transcription elongation from RNA polymerase II promoter [Evidence IDA,IPI] [PMID 21406554]; GO_process: GO:0016567 - protein ubiquitination [Evidence IMP] [PMID 16926149]; GO_process: GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence IPI] [PMID 10490603]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA,IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; CCR4-NOT core subunit NOT3 3061285 NOT3 30034995 NOT3 Sugiyamaella lignohabitans CCR4-NOT core subunit NOT3 XP_018737869.1 3059321 D 796027 CDS AWJ20_3020 30034997 complement(3061550..3063490) B 1 NC_031674.1 Transketolase; catalyzes conversion of xylulose-5-phosphate and ribose-5-phosphate to sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate in the pentose phosphate pathway; needed for synthesis of aromatic amino acids; TKL1 has a paralog, TKL2, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence ISS] [PMID 2843500]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0004802 - transketolase activity [Evidence IEA,IEA]; GO_function: GO:0004802 - transketolase activity [Evidence IMP,ISS] [PMID 8226984]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0006098 - pentose-phosphate shunt [Evidence IMP] [PMID 8299150]; GO_process: GO:0006098 - pentose-phosphate shunt [Evidence TAS] [PMID 8534086]; transketolase TKL1 3063490 TKL1 30034997 TKL1 Sugiyamaella lignohabitans transketolase TKL1 XP_018737870.1 3061550 R 796027 CDS AWJ20_3021 30034998 complement(3065599..3067581) B 1 NC_031674.1 Protein OPY2 3067581 OPY2 30034998 OPY2 Sugiyamaella lignohabitans Protein OPY2 XP_018737871.1 3065599 R 796027 CDS AWJ20_3022 30034999 3068662..3069573 B 1 NC_031674.1 uncharacterized protein 3069573 30034999 AWJ20_3022 Sugiyamaella lignohabitans uncharacterized protein XP_018737872.1 3068662 D 796027 CDS AWJ20_3023 30035000 complement(3069671..3072418) B 1 NC_031674.1 Component of cytosolic iron-sulfur protein assembly (CIA) machinery; acts at a late step of Fe-S cluster assembly; forms the CIA targeting complex with Cia1p and Cia2p that directs Fe-S cluster incorporation into a subset of proteins involved in methionine biosynthesis, DNA replication and repair, transcription, and telomere maintenance; ortholog of human MMS19; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006281 - DNA repair [Evidence IEA]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0016226 - iron-sulfur cluster assembly [Evidence IMP] [PMID 22678361]; GO_process: GO:0016226 - iron-sulfur cluster assembly [Evidence IMP] [PMID 22678362]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Met18p 3072418 MET18 30035000 MET18 Sugiyamaella lignohabitans Met18p XP_018737873.1 3069671 R 796027 CDS AWJ20_3024 30035001 3073955..3074638 B 1 NC_031674.1 Alpha catalytic subunit of casein kinase 2 (CK2); a Ser/Thr protein kinase with roles in cell growth and proliferation; CK2, comprised of CKA1, CKA2, CKB1 and CKB2, has many substrates including transcription factors and all RNA polymerases; regulates Fkh1p-mediated donor preference during mating-type switching; GO_component: GO:0034456 - UTP-C complex [Evidence IDA] [PMID 17515605]; GO_component: GO:0005956 - protein kinase CK2 complex [Evidence IDA] [PMID 8135547]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0004672 - protein kinase activity [Evidence IEA]; GO_function: GO:0004672 - protein kinase activity [Evidence IDA] [PMID 16319894]; GO_function: GO:0004674 - protein serine/threonine kinase activity [Evidence IEA,IEA]; GO_function: GO:0004674 - protein serine/threonine kinase activity [Evidence IDA] [PMID 8226802]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016772 - transferase activity, transferring phosphorus-containing groups [Evidence IEA]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IDA] [PMID 11551505]; GO_process: GO:0007535 - donor selection [Evidence IGI] [PMID 22496671]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; GO_process: GO:0006468 - protein phosphorylation [Evidence IEA]; GO_process: GO:0006468 - protein phosphorylation [Evidence IDA] [PMID 16319894]; GO_process: GO:0006468 - protein phosphorylation [Evidence IMP] [PMID 16607517]; GO_process: GO:0006468 - protein phosphorylation [Evidence IDA] [PMID 16952051]; GO_process: GO:0006356 - regulation of transcription from RNA polymerase I promoter [Evidence IDA] [PMID 11551505]; GO_process: GO:0006359 - regulation of transcription from RNA polymerase III promoter [Evidence IDA] [PMID 11551505]; casein kinase 2 catalytic subunit CKA1 3074638 CKA1 30035001 CKA1 Sugiyamaella lignohabitans casein kinase 2 catalytic subunit CKA1 XP_018737874.1 3073955 D 796027 CDS AWJ20_3025 30035002 3074934..3077090 B 1 NC_031674.1 Subunit of a complex with Ctf8p; shares some subunits with Replication Factor C and is required for sister chromatid cohesion; may have overlapping functions with Rad24p in the DNA damage replication checkpoint; GO_component: GO:0031390 - Ctf18 RFC-like complex [Evidence IPI] [PMID 11389843]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0043596 - nuclear replication fork [Evidence IDA] [PMID 16962805]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_process: GO:0006260 - DNA replication [Evidence IEA]; GO_process: GO:0006270 - DNA replication initiation [Evidence IMP] [PMID 20980819]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0000724 - double-strand break repair via homologous recombination [Evidence IMP] [PMID 17636314]; GO_process: GO:0035753 - maintenance of DNA trinucleotide repeats [Evidence IMP] [PMID 21347277]; GO_process: GO:0007064 - mitotic sister chromatid cohesion [Evidence IMP] [PMID 11287619]; GO_process: GO:0007064 - mitotic sister chromatid cohesion [Evidence IMP] [PMID 11389843]; GO_process: GO:0007064 - mitotic sister chromatid cohesion [Evidence IGI] [PMID 17483413]; Ctf18p 3077090 CTF18 30035002 CTF18 Sugiyamaella lignohabitans Ctf18p XP_018737875.1 3074934 D 796027 CDS AWJ20_3026 30035003 3079115..3080056 B 1 NC_031674.1 Type I membrane protein involved in autophagy and the Cvt pathway; may be involved in membrane delivery to the phagophore assembly site; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA]; GO_component: GO:0031410 - cytoplasmic vesicle [Evidence IEA]; GO_component: GO:0030659 - cytoplasmic vesicle membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IDA,ISS] [PMID 12186856]; GO_component: GO:0031966 - mitochondrial membrane [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 17135291]; GO_component: GO:0000407 - pre-autophagosomal structure [Evidence IDA] [PMID 17135291]; GO_component: GO:0034045 - pre-autophagosomal structure membrane [Evidence IEA]; GO_component: GO:0005802 - trans-Golgi network [Evidence IDA] [PMID 16107716]; GO_function: GO:0032266 - phosphatidylinositol-3-phosphate binding [Evidence IDA] [PMID 12186856]; GO_process: GO:0032258 - CVT pathway [Evidence IMP] [PMID 17135291]; GO_process: GO:0000045 - autophagic vacuole assembly [Evidence IMP] [PMID 17135291]; GO_process: GO:0006914 - autophagy [Evidence IEA]; GO_process: GO:0030242 - peroxisome degradation [Evidence IMP] [PMID 17135291]; GO_process: GO:0034497 - protein localization to pre-autophagosomal structure [Evidence IMP] [PMID 17135291]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0016050 - vesicle organization [Evidence IMP] [PMID 12186856]; Atg27p 3080056 ATG27 30035003 ATG27 Sugiyamaella lignohabitans Atg27p XP_018737876.1 3079115 D 796027 CDS AWJ20_3027 30035004 complement(3080201..3080536) B 1 NC_031674.1 uncharacterized protein 3080536 30035004 AWJ20_3027 Sugiyamaella lignohabitans uncharacterized protein XP_018737877.1 3080201 R 796027 CDS AWJ20_3028 30035005 3080818..3081714 B 1 NC_031674.1 Assembly factor for the F1 sector of mitochondrial F1F0 ATP synthase; conserved protein; required for the assembly of alpha and beta subunits into the F1 sector of the mitochondrial F1F0 ATP synthase; mutation of human ATP12 reduces active ATP synthase levels and is associated with the disorder ATPAF2 deficiency; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 1826907]; GO_function: GO:0019904 - protein domain specific binding [Evidence IPI] [PMID 10747017]; GO_process: GO:0033615 - mitochondrial proton-transporting ATP synthase complex assembly [Evidence IPI] [PMID 10747017]; GO_process: GO:0033615 - mitochondrial proton-transporting ATP synthase complex assembly [Evidence IMP] [PMID 2142305]; GO_process: GO:0043461 - proton-transporting ATP synthase complex assembly [Evidence IEA]; Atp12p 3081714 ATP12 30035005 ATP12 Sugiyamaella lignohabitans Atp12p XP_018737878.1 3080818 D 796027 CDS AWJ20_3029 30035006 3086503..3087237 B 1 NC_031674.1 DASH complex subunit DUO1 3087237 30035006 AWJ20_3029 Sugiyamaella lignohabitans DASH complex subunit DUO1 XP_018737879.1 3086503 D 796027 CDS AWJ20_3030 30035008 3088365..3089408 B 1 NC_031674.1 Beta-tubulin; associates with alpha-tubulin (Tub1p and Tub3p) to form tubulin dimer, which polymerizes to form microtubules; mutation in human ortholog is associated with congenital fibrosis of the extraocular muscles (CFEOM) with polymicrogyria; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005881 - cytoplasmic microtubule [Evidence IC] [PMID 9488492]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA,IEA]; GO_component: GO:0005828 - kinetochore microtubule [Evidence IC] [PMID 9488492]; GO_component: GO:0005874 - microtubule [Evidence IEA,IEA]; GO_component: GO:0005880 - nuclear microtubule [Evidence IC] [PMID 9488492]; GO_component: GO:0043234 - protein complex [Evidence IEA]; GO_component: GO:0005816 - spindle pole body [Evidence IDA] [PMID 9585415]; GO_component: GO:0045298 - tubulin complex [Evidence IDA,IPI] [PMID 9488492]; GO_function: GO:0005525 - GTP binding [Evidence IEA,IEA]; GO_function: GO:0003924 - GTPase activity [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0005200 - structural constituent of cytoskeleton [Evidence IEA]; GO_process: GO:0006184 - GTP catabolic process [Evidence IEA]; GO_process: GO:0045143 - homologous chromosome segregation [Evidence IC] [PMID 9488492]; GO_process: GO:0007017 - microtubule-based process [Evidence IEA]; GO_process: GO:0000070 - mitotic sister chromatid segregation [Evidence IC] [PMID 9488492]; GO_process: GO:0030473 - nuclear migration along microtubule [Evidence IC] [PMID 9488492]; GO_process: GO:0051258 - protein polymerization [Evidence IEA]; GO_process: GO:0046677 - response to antibiotic [Evidence IEA]; beta-tubulin 3089408 TUB2 30035008 TUB2 Sugiyamaella lignohabitans beta-tubulin XP_018737880.1 3088365 D 796027 CDS AWJ20_3031 30035009 complement(3089621..3092842) B 1 NC_031674.1 Pyruvate carboxylase isoform; cytoplasmic enzyme that converts pyruvate to oxaloacetate; differentially regulated than isoform Pyc1p; mutations in the human homolog are associated with lactic acidosis; PYC2 has a paralog, PYC1, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 196563]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 2665820]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0004075 - biotin carboxylase activity [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA,IEA]; GO_function: GO:0016874 - ligase activity [Evidence IEA,IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA,IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0004736 - pyruvate carboxylase activity [Evidence IEA,IEA]; GO_function: GO:0004736 - pyruvate carboxylase activity [Evidence IMP] [PMID 2039506]; GO_process: GO:0006094 - gluconeogenesis [Evidence IEA,IEA,IEA]; GO_process: GO:0006094 - gluconeogenesis [Evidence IMP] [PMID 8185321]; GO_process: GO:0008152 - metabolic process [Evidence IEA,IEA]; pyruvate carboxylase 2 3092842 PYC2 30035009 PYC2 Sugiyamaella lignohabitans pyruvate carboxylase 2 XP_018737881.1 3089621 R 796027 CDS AWJ20_3032 30035010 complement(3095778..3098963) B 1 NC_031674.1 ATP-dependent RNA helicase of the SFI superfamily; involved in nonsense mediated mRNA decay; required for efficient translation termination at nonsense codons and targeting of NMD substrates to P-bodies; binds to the small ribosomal subunit via an interaction with Rps26; forms cytoplasmic foci upon DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14763985]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005844 - polysome [Evidence TAS] [PMID 10098411]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004004 - ATP-dependent RNA helicase activity [Evidence TAS] [PMID 10322435]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0008186 - RNA-dependent ATPase activity [Evidence TAS] [PMID 10322435]; GO_function: GO:0004386 - helicase activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence TAS] [PMID 10098411]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_function: GO:0043024 - ribosomal small subunit binding [Evidence IDA] [PMID 23801788]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0006310 - DNA recombination [Evidence IMP] [PMID 23390378]; GO_process: GO:0030466 - chromatin silencing at silent mating-type cassette [Evidence IGI] [PMID 16157874]; GO_process: GO:0008298 - intracellular mRNA localization [Evidence IMP] [PMID 16777600]; GO_process: GO:0000956 - nuclear-transcribed mRNA catabolic process [Evidence IMP] [PMID 16285926]; GO_process: GO:0070478 - nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay [Evidence IGI] [PMID 12769863]; GO_process: GO:0070478 - nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay [Evidence IGI,IMP] [PMID 12881429]; GO_process: GO:0000184 - nuclear-transcribed mRNA catabolic process, nonsense-mediated decay [Evidence IEA,IEA]; GO_process: GO:0000184 - nuclear-transcribed mRNA catabolic process, nonsense-mediated decay [Evidence TAS] [PMID 10098411]; GO_process: GO:0016567 - protein ubiquitination [Evidence IDA,IMP,IPI] [PMID 18676617]; GO_process: GO:0006449 - regulation of translational termination [Evidence TAS] [PMID 10098411]; GO_process: GO:0006452 - translational frameshifting [Evidence IMP] [PMID 15388879]; ATP-dependent RNA helicase NAM7 3098963 NAM7 30035010 NAM7 Sugiyamaella lignohabitans ATP-dependent RNA helicase NAM7 XP_018737882.1 3095778 R 796027 CDS AWJ20_3033 30035011 complement(3099455..3099802) B 1 NC_031674.1 uncharacterized protein 3099802 30035011 AWJ20_3033 Sugiyamaella lignohabitans uncharacterized protein XP_018737883.1 3099455 R 796027 CDS AWJ20_3034 30035012 3100758..3101381 B 1 NC_031674.1 Protein component of the H/ACA snoRNP pseudouridylase complex; involved in the modification and cleavage of the 18S pre-rRNA; GO_component: GO:0031429 - box H/ACA snoRNP complex [Evidence IEA]; GO_component: GO:0031429 - box H/ACA snoRNP complex [Evidence IPI] [PMID 2898766]; GO_component: GO:0031429 - box H/ACA snoRNP complex [Evidence IPI] [PMID 9843512]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 1531632]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005732 - small nucleolar ribonucleoprotein complex [Evidence IPI] [PMID 1531632]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0034513 - box H/ACA snoRNA binding [Evidence IPI] [PMID 9556561]; GO_process: GO:0001522 - pseudouridine synthesis [Evidence IEA]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0006364 - rRNA processing [Evidence TAS] [PMID 10690410]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA,IEA]; GO_process: GO:0031120 - snRNA pseudouridine synthesis [Evidence IDA] [PMID 15962000]; H/ACA snoRNP pseudouridylase subunit GAR1 3101381 GAR1 30035012 GAR1 Sugiyamaella lignohabitans H/ACA snoRNP pseudouridylase subunit GAR1 XP_018737884.1 3100758 D 796027 CDS AWJ20_3035 30035013 complement(3101597..3102463) B 1 NC_031674.1 uncharacterized protein 3102463 30035013 AWJ20_3035 Sugiyamaella lignohabitans uncharacterized protein XP_018737885.1 3101597 R 796027 CDS AWJ20_3036 30035014 complement(3103323..3104456) B 1 NC_031674.1 uncharacterized protein 3104456 30035014 AWJ20_3036 Sugiyamaella lignohabitans uncharacterized protein XP_018737886.1 3103323 R 796027 CDS AWJ20_3037 30035015 3112558..3115179 B 1 NC_031674.1 uncharacterized protein 3115179 30035015 AWJ20_3037 Sugiyamaella lignohabitans uncharacterized protein XP_018737887.1 3112558 D 796027 CDS AWJ20_3038 30035016 join(3115778..3115814,3115959..3120304) B 1 NC_031674.1 Endocytic protein; involved in a network of interactions with other endocytic proteins, binds membranes in a ubiquitin-dependent manner, may also bind ubiquitinated membrane-associated proteins; interacts with Cmk2 and functions upstream of CMK2 in regulating non-apoptotic cell death; GO_component: GO:0030479 - actin cortical patch [Evidence IDA] [PMID 10954428]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 11452010]; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 11452010]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 19053807]; GO_function: GO:0005509 - calcium ion binding [Evidence IEA]; GO_function: GO:0043130 - ubiquitin binding [Evidence IDA] [PMID 16563434]; GO_process: GO:0006897 - endocytosis [Evidence IEA]; GO_process: GO:0006897 - endocytosis [Evidence IMP] [PMID 10954428]; GO_process: GO:0030968 - endoplasmic reticulum unfolded protein response [Evidence IMP] [PMID 16582425]; Ede1p 3120304 EDE1 30035016 EDE1 Sugiyamaella lignohabitans Ede1p XP_018737888.1 3115778 D 796027 CDS AWJ20_3039 30035017 complement(3120428..3121849) B 1 NC_031674.1 MIND complex subunit NNF1 3121849 NNF1 30035017 NNF1 Sugiyamaella lignohabitans MIND complex subunit NNF1 XP_018737889.1 3120428 R 796027 CDS AWJ20_3040 30035019 3122807..3123325 B 1 NC_031674.1 Alpha-SNAP cochaperone; SNARE-complex adaptor for Sec18 (NSF) during the disassembly of postfusion cis-SNARE complexes; stimulates the ATPase activity of Sec18p; peripheral membrane protein required for vesicular transport between ER and Golgi, the 'priming' step in homotypic vacuole fusion, and autophagy; similar to mammalian alpha-SNAP; GO_component: GO:0031201 - SNARE complex [Evidence IPI] [PMID 10397773]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 8636207]; GO_component: GO:0019898 - extrinsic component of membrane [Evidence IDA] [PMID 1601878]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 19001347]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_function: GO:0001671 - ATPase activator activity [Evidence IDA] [PMID 10387016]; GO_function: GO:0005483 - soluble NSF attachment protein activity [Evidence IPI] [PMID 10387016]; GO_function: GO:0005483 - soluble NSF attachment protein activity [Evidence IDA] [PMID 11994317]; GO_process: GO:0035494 - SNARE complex disassembly [Evidence IDA] [PMID 18650938]; GO_process: GO:0035494 - SNARE complex disassembly [Evidence IDA] [PMID 9425154]; GO_process: GO:0006914 - autophagy [Evidence IMP] [PMID 11694599]; GO_process: GO:0006886 - intracellular protein transport [Evidence IEA]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0042144 - vacuole fusion, non-autophagic [Evidence IDA] [PMID 8670830]; GO_process: GO:0042144 - vacuole fusion, non-autophagic [Evidence IDA] [PMID 9685264]; GO_process: GO:0048280 - vesicle fusion with Golgi apparatus [Evidence IDA] [PMID 1601878]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IEA]; Sec17p 3123325 SEC17 30035019 SEC17 Sugiyamaella lignohabitans Sec17p XP_018737890.1 3122807 D 796027 CDS AWJ20_3041 30035020 3123840..3127268 B 1 NC_031674.1 Large subunit of carbamoyl phosphate synthetase; carbamoyl phosphate synthetase catalyzes a step in the synthesis of citrulline, an arginine precursor; GO_component: GO:0005951 - carbamoyl-phosphate synthase complex [Evidence IDA] [PMID 206535]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004088 - carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity [Evidence IEA]; GO_function: GO:0004088 - carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity [Evidence IMP] [PMID 6358221]; GO_function: GO:0004088 - carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity [Evidence IDA] [PMID 8626695]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA,IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006526 - arginine biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0006526 - arginine biosynthetic process [Evidence IMP] [PMID 8626695]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0006807 - nitrogen compound metabolic process [Evidence IEA]; carbamoyl-phosphate synthase (glutamine-hydrolyzing) CPA2 3127268 CPA2 30035020 CPA2 Sugiyamaella lignohabitans carbamoyl-phosphate synthase (glutamine-hydrolyzing) CPA2 XP_018737891.1 3123840 D 796027 CDS AWJ20_3042 30035021 3128757..3130418 B 1 NC_031674.1 Subunit of the SAGA transcriptional regulatory complex; involved in maintaining the integrity of the complex; mutant displays reduced transcription elongation in the G-less-based run-on (GLRO) assay; GO_component: GO:0000124 - SAGA complex [Evidence IEA]; GO_component: GO:0000124 - SAGA complex [Evidence IDA] [PMID 9224714]; GO_component: GO:0000124 - SAGA complex [Evidence IDA] [PMID 9674426]; GO_component: GO:0046695 - SLIK (SAGA-like) complex [Evidence IDA] [PMID 12446794]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0003712 - transcription cofactor activity [Evidence IEA]; GO_function: GO:0003712 - transcription cofactor activity [Evidence IGI,IMP,IPI] [PMID 8649430]; GO_process: GO:0030969 - UFP-specific transcription factor mRNA processing involved in endoplasmic reticulum unfolded protein response [Evidence IMP] [PMID 10652329]; GO_process: GO:0016568 - chromatin modification [Evidence IDA] [PMID 9674426]; GO_process: GO:0016573 - histone acetylation [Evidence IDA] [PMID 9674426]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Spt20p 3130418 SPT20 30035021 SPT20 Sugiyamaella lignohabitans Spt20p XP_018737892.1 3128757 D 796027 CDS AWJ20_3043 30035022 3131045..3132865 B 1 NC_031674.1 uncharacterized protein 3132865 30035022 AWJ20_3043 Sugiyamaella lignohabitans uncharacterized protein XP_018737893.1 3131045 D 796027 CDS AWJ20_3044 30035023 3133710..3134279 B 1 NC_031674.1 Thiol-specific peroxiredoxin; reduces hydroperoxides to protect against oxidative damage; function in vivo requires covalent conjugation to Urm1p; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 10681558]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 16622836]; GO_function: GO:0016209 - antioxidant activity [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0004601 - peroxidase activity [Evidence IEA]; GO_function: GO:0051920 - peroxiredoxin activity [Evidence IEA]; GO_function: GO:0008379 - thioredoxin peroxidase activity [Evidence IDA,IMP,ISS] [PMID 10681558]; GO_process: GO:0045454 - cell redox homeostasis [Evidence IDA,IMP] [PMID 10681558]; GO_process: GO:0034599 - cellular response to oxidative stress [Evidence IGI] [PMID 15051715]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; GO_process: GO:0010038 - response to metal ion [Evidence IMP] [PMID 12270680]; Ahp1p 3134279 AHP1 30035023 AHP1 Sugiyamaella lignohabitans Ahp1p XP_018737894.1 3133710 D 796027 CDS AWJ20_3045 30035024 complement(join(3134505..3135071,3135130..3135321)) B 1 NC_031674.1 uncharacterized protein 3135321 30035024 AWJ20_3045 Sugiyamaella lignohabitans uncharacterized protein XP_018737895.1 3134505 R 796027 CDS AWJ20_3046 30035025 3135695..3136180 B 1 NC_031674.1 Subunit of the Dcp1p-Dcp2p decapping enzyme complex; decapping complex removes the 5' cap structure from mRNAs prior to their degradation; enhances the activity of catalytic subunit Dcp2p; regulated by DEAD box protein Dhh1p; forms cytoplasmic foci upon DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 23706738]; GO_component: GO:0000932 - cytoplasmic mRNA processing body [Evidence IEA]; GO_component: GO:0000932 - cytoplasmic mRNA processing body [Evidence IDA,IMP] [PMID 12730603]; GO_component: GO:0000932 - cytoplasmic mRNA processing body [Evidence IDA] [PMID 23509072]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 23706738]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0008047 - enzyme activator activity [Evidence IDA] [PMID 16341225]; GO_function: GO:0050072 - m7G(5')pppN diphosphatase activity [Evidence IDA] [PMID 16341225]; GO_function: GO:0003729 - mRNA binding [Evidence IPI] [PMID 11139489]; GO_process: GO:0000290 - deadenylation-dependent decapping of nuclear-transcribed mRNA [Evidence IDA] [PMID 11139489]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0000184 - nuclear-transcribed mRNA catabolic process, nonsense-mediated decay [Evidence IEA]; Dcp1p 3136180 DCP1 30035025 DCP1 Sugiyamaella lignohabitans Dcp1p XP_018737896.1 3135695 D 796027 CDS AWJ20_3047 30035026 3136970..3138547 B 1 NC_031674.1 E3 ubiquitin-protein ligase HEL1 3138547 HEL1 30035026 HEL1 Sugiyamaella lignohabitans E3 ubiquitin-protein ligase HEL1 XP_018737897.1 3136970 D 796027 CDS AWJ20_3048 30035027 complement(3138828..3140429) B 1 NC_031674.1 Probable Mg(2+) transporter; overexpression confers increased tolerance to Al(3+) and Ga(3+) ions; plays a role in regulating Ty1 transposition; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IMP] [PMID 9430719]; GO_function: GO:0022890 - inorganic cation transmembrane transporter activity [Evidence IMP] [PMID 9430719]; GO_function: GO:0046873 - metal ion transmembrane transporter activity [Evidence IEA]; GO_process: GO:0006812 - cation transport [Evidence IMP] [PMID 9430719]; GO_process: GO:0015693 - magnesium ion transport [Evidence IDA] [PMID 12167543]; GO_process: GO:0030001 - metal ion transport [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IMP] [PMID 9430719]; GO_process: GO:0006810 - transport [Evidence IEA]; putative Mg(2+) transporter ALR2 3140429 ALR2 30035027 ALR2 Sugiyamaella lignohabitans putative Mg(2+) transporter ALR2 XP_018737898.1 3138828 R 796027 CDS AWJ20_3049 30035028 3142860..3145505 B 1 NC_031674.1 Essential conserved protein with a role in cell wall integrity; contains six TPR (tetratricopeptide repeat) domains clustered in the C-terminal region; conditional mutant is suppressed by overexpression of GFA1; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14690591]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 21273246]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14690591]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 21273246]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0031505 - fungal-type cell wall organization [Evidence IMP] [PMID 21273246]; Emw1p 3145505 EMW1 30035028 EMW1 Sugiyamaella lignohabitans Emw1p XP_018737899.1 3142860 D 796027 CDS AWJ20_3050 30035030 complement(3145596..3146546) B 1 NC_031674.1 uncharacterized protein 3146546 30035030 AWJ20_3050 Sugiyamaella lignohabitans uncharacterized protein XP_018737900.1 3145596 R 796027 CDS AWJ20_3051 30035031 3148043..3150580 B 1 NC_031674.1 uncharacterized protein 3150580 30035031 AWJ20_3051 Sugiyamaella lignohabitans uncharacterized protein XP_018737901.1 3148043 D 796027 CDS AWJ20_3052 30035032 complement(3150811..3153075) B 1 NC_031674.1 uncharacterized protein 3153075 30035032 AWJ20_3052 Sugiyamaella lignohabitans uncharacterized protein XP_018737902.1 3150811 R 796027 CDS AWJ20_3053 30035033 3154441..3154704 B 1 NC_031674.1 Mitochondrial ribosomal protein of the small subunit 3154704 30035033 AWJ20_3053 Sugiyamaella lignohabitans Mitochondrial ribosomal protein of the small subunit XP_018737903.1 3154441 D 796027 CDS AWJ20_3054 30035034 complement(3155570..3158614) B 1 NC_031674.1 Voltage-gated high-affinity calcium channel; involved in calcium influx in response to some environmental stresses as well as exposure to mating pheromones; interacts and co-localizes with Mid1p, suggesting Cch1p and Mid1p function together; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 10958666]; GO_function: GO:0005262 - calcium channel activity [Evidence IEA]; GO_function: GO:0005262 - calcium channel activity [Evidence IDA] [PMID 10958666]; GO_function: GO:0005262 - calcium channel activity [Evidence IMP] [PMID 9343395]; GO_function: GO:0005509 - calcium ion binding [Evidence IEA]; GO_function: GO:0005216 - ion channel activity [Evidence IEA]; GO_function: GO:0005245 - voltage-gated calcium channel activity [Evidence ISS] [PMID 9343395]; GO_function: GO:0005244 - voltage-gated ion channel activity [Evidence IEA]; GO_process: GO:0070588 - calcium ion transmembrane transport [Evidence IEA]; GO_process: GO:0006816 - calcium ion transport [Evidence IEA]; GO_process: GO:0006816 - calcium ion transport [Evidence IDA] [PMID 10958666]; GO_process: GO:0006816 - calcium ion transport [Evidence IMP] [PMID 9343395]; GO_process: GO:0006811 - ion transport [Evidence IEA,IEA]; GO_process: GO:0034765 - regulation of ion transmembrane transport [Evidence IEA]; GO_process: GO:0006950 - response to stress [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Cch1p 3158614 CCH1 30035034 CCH1 Sugiyamaella lignohabitans Cch1p XP_018737904.1 3155570 R 796027 CDS AWJ20_3055 30035035 complement(3159658..3161730) B 1 NC_031674.1 Voltage-gated high-affinity calcium channel; involved in calcium influx in response to some environmental stresses as well as exposure to mating pheromones; interacts and co-localizes with Mid1p, suggesting Cch1p and Mid1p function together; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 10958666]; GO_function: GO:0005262 - calcium channel activity [Evidence IEA]; GO_function: GO:0005262 - calcium channel activity [Evidence IDA] [PMID 10958666]; GO_function: GO:0005262 - calcium channel activity [Evidence IMP] [PMID 9343395]; GO_function: GO:0005509 - calcium ion binding [Evidence IEA]; GO_function: GO:0005216 - ion channel activity [Evidence IEA]; GO_function: GO:0005245 - voltage-gated calcium channel activity [Evidence ISS] [PMID 9343395]; GO_function: GO:0005244 - voltage-gated ion channel activity [Evidence IEA]; GO_process: GO:0070588 - calcium ion transmembrane transport [Evidence IEA]; GO_process: GO:0006816 - calcium ion transport [Evidence IEA]; GO_process: GO:0006816 - calcium ion transport [Evidence IDA] [PMID 10958666]; GO_process: GO:0006816 - calcium ion transport [Evidence IMP] [PMID 9343395]; GO_process: GO:0006811 - ion transport [Evidence IEA,IEA]; GO_process: GO:0034765 - regulation of ion transmembrane transport [Evidence IEA]; GO_process: GO:0006950 - response to stress [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Cch1p 3161730 CCH1 30035035 CCH1 Sugiyamaella lignohabitans Cch1p XP_018737905.1 3159658 R 796027 CDS AWJ20_3056 30035036 3162607..3163599 B 1 NC_031674.1 uncharacterized protein 3163599 30035036 AWJ20_3056 Sugiyamaella lignohabitans uncharacterized protein XP_018737906.1 3162607 D 796027 CDS AWJ20_3057 30035037 complement(3163760..3165541) B 1 NC_031674.1 Enzyme of 'de novo' purine biosynthesis; contains both 5-aminoimidazole-4-carboxamide ribonucleotide transformylase and inosine monophosphate cyclohydrolase activities; ADE17 has a paralog, ADE16, that arose from the whole genome duplication; ade16 ade17 mutants require adenine and histidine; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 10877846]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 16622836]; GO_function: GO:0003937 - IMP cyclohydrolase activity [Evidence IEA,IEA]; GO_function: GO:0003937 - IMP cyclohydrolase activity [Evidence IDA] [PMID 10877846]; GO_function: GO:0003824 - catalytic activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0004643 - phosphoribosylaminoimidazolecarboxamide formyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0004643 - phosphoribosylaminoimidazolecarboxamide formyltransferase activity [Evidence IDA] [PMID 10877846]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006189 - 'de novo' IMP biosynthetic process [Evidence IEA]; GO_process: GO:0006189 - 'de novo' IMP biosynthetic process [Evidence IDA,IMP] [PMID 10877846]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0006164 - purine nucleotide biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0006164 - purine nucleotide biosynthetic process [Evidence IDA,IMP] [PMID 10877846]; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase ADE17 3165541 ADE17 30035037 ADE17 Sugiyamaella lignohabitans bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase ADE17 XP_018737907.1 3163760 R 796027 CDS AWJ20_3058 30035038 complement(3168412..3169023) B 1 NC_031674.1 Ribosomal 60S subunit protein L15B; binds to 5.8 S rRNA; homologous to mammalian ribosomal protein L15, no bacterial homolog; RPL15B has a paralog, RPL15A, that arose from the whole genome duplication; relocalizes from nucleus to nucleolus upon DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0022625 - cytosolic large ribosomal subunit [Evidence IDA] [PMID 6814480]; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 22842922]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA,IEA]; GO_function: GO:0003723 - RNA binding [Evidence IDA] [PMID 6337137]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IDA] [PMID 6814480]; GO_process: GO:0002181 - cytoplasmic translation [Evidence IDA] [PMID 6814480]; GO_process: GO:0006412 - translation [Evidence IEA]; ribosomal 60S subunit protein L15B 3169023 RPL15B 30035038 RPL15B Sugiyamaella lignohabitans ribosomal 60S subunit protein L15B XP_018737908.1 3168412 R 796027 CDS AWJ20_3059 30035039 complement(3179400..3181037) B 1 NC_031674.1 uncharacterized protein 3181037 30035039 AWJ20_3059 Sugiyamaella lignohabitans uncharacterized protein XP_018737909.1 3179400 R 796027 CDS AWJ20_3060 30035041 3183191..3185182 B 1 NC_031674.1 uncharacterized protein 3185182 30035041 AWJ20_3060 Sugiyamaella lignohabitans uncharacterized protein XP_018737910.1 3183191 D 796027 CDS AWJ20_3061 30035042 complement(3185259..3185930) B 1 NC_031674.1 hypothetical protein; similar to Listeria monocytogenes major sigma factor (rpoD gene product); the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 17034789]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 17034789]; GO_function: GO:0005525 - GTP binding [Evidence IEA]; GO_function: GO:0003934 - GTP cyclohydrolase I activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0035998 - 7,8-dihydroneopterin 3'-triphosphate biosynthetic process [Evidence IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; Nif3p 3185930 NIF3 30035042 NIF3 Sugiyamaella lignohabitans Nif3p XP_018737911.1 3185259 R 796027 CDS AWJ20_3062 30035043 complement(3186900..3189686) B 1 NC_031674.1 Subunit of the ASTRA complex, involved in chromatin remodeling; subunit of the telomere cap complex DNA-binding protein specific to single-stranded yeast telomeric DNA repeats, required for telomere length regulation and telomere position effect; involved in the stability or biogenesis of PIKKs such as TORC1; GO_component: GO:0070209 - ASTRA complex [Evidence IDA] [PMID 19040720]; GO_component: GO:0005694 - chromosome [Evidence IEA]; GO_component: GO:0000781 - chromosome, telomeric region [Evidence IEA,IEA]; GO_component: GO:0000784 - nuclear chromosome, telomeric region [Evidence IDA] [PMID 9490802]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0042162 - telomeric DNA binding [Evidence IDA] [PMID 10525964]; GO_process: GO:0034502 - protein localization to chromosome [Evidence IMP] [PMID 18334620]; GO_process: GO:0000723 - telomere maintenance [Evidence IMP] [PMID 3513174]; GO_process: GO:0007004 - telomere maintenance via telomerase [Evidence IMP] [PMID 8649421]; Tel2p 3189686 TEL2 30035043 TEL2 Sugiyamaella lignohabitans Tel2p XP_018737912.1 3186900 R 796027 CDS AWJ20_3064 30035045 3190831..3192126 B 1 NC_031674.1 O-acetyl homoserine-O-acetyl serine sulfhydrylase; required for Methionine and cysteine biosynthesis; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 16622836]; GO_function: GO:0003961 - O-acetylhomoserine aminocarboxypropyltransferase activity [Evidence IEA]; GO_function: GO:0003961 - O-acetylhomoserine aminocarboxypropyltransferase activity [Evidence TAS] [PMID 3299001]; GO_function: GO:0003961 - O-acetylhomoserine aminocarboxypropyltransferase activity [Evidence IDA] [PMID 7765825]; GO_function: GO:0003824 - catalytic activity [Evidence IEA,IEA]; GO_function: GO:0004124 - cysteine synthase activity [Evidence IEA]; GO_function: GO:0004124 - cysteine synthase activity [Evidence IDA] [PMID 7765825]; GO_function: GO:0030170 - pyridoxal phosphate binding [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016765 - transferase activity, transferring alkyl or aryl (other than methyl) groups [Evidence IEA]; GO_process: GO:0071266 - 'de novo' L-methionine biosynthetic process [Evidence IEA]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0006520 - cellular amino acid metabolic process [Evidence IEA]; GO_process: GO:0019344 - cysteine biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0019344 - cysteine biosynthetic process [Evidence TAS] [PMID 15042590]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0009086 - methionine biosynthetic process [Evidence IEA]; GO_process: GO:0006555 - methionine metabolic process [Evidence IMP] [PMID 1101032]; bifunctional cysteine synthase/O-acetylhomoserine aminocarboxypropyltransferase MET17 3192126 MET17 30035045 MET17 Sugiyamaella lignohabitans bifunctional cysteine synthase/O-acetylhomoserine aminocarboxypropyltransferase MET17 XP_018737913.1 3190831 D 796027 CDS AWJ20_3065 30035046 complement(3191185..3191523) B 1 NC_031674.1 uncharacterized protein 3191523 30035046 AWJ20_3065 Sugiyamaella lignohabitans uncharacterized protein XP_018737914.1 3191185 R 796027 CDS AWJ20_3066 30035047 complement(3192294..3193679) B 1 NC_031674.1 hypothetical protein with 8 putative transmembrane segments; ORF exhibits genomic organization compatible with a translational readthrough-dependent mode of expression; GO_component: GO:0030137 - COPI-coated vesicle [Evidence IDA] [PMID 14562095]; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA,IEA]; GO_component: GO:0030136 - clathrin-coated vesicle [Evidence IDA] [PMID 14562095]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Bsc6p 3193679 BSC6 30035047 BSC6 Sugiyamaella lignohabitans Bsc6p XP_018737915.1 3192294 R 796027 CDS AWJ20_3067 30035048 join(3195101..3195260,3195471..3197494) B 1 NC_031674.1 Actin-binding protein of the cortical actin cytoskeleton; important for activation of the Arp2/3 complex that plays a key role actin in cytoskeleton organization; inhibits barbed-end actin filament elongation; phosphorylation within its Proline-Rich Regio, mediated by Cdc28p and Pho85p, protects Abp1p from proteolysis mediated by its own PEST sequences; mammalian homologue of HIP-55 (hematopoietic progenitor kinase 1 [HPK1]-interacting protein of 55 kDa); GO_component: GO:0030479 - actin cortical patch [Evidence IEA]; GO_component: GO:0030479 - actin cortical patch [Evidence IDA] [PMID 3060468]; GO_component: GO:0030479 - actin cortical patch [Evidence IDA] [PMID 8163554]; GO_component: GO:0005938 - cell cortex [Evidence IDA] [PMID 11950888]; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA]; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 19053807]; GO_function: GO:0003779 - actin binding [Evidence IEA,IEA]; GO_function: GO:0051015 - actin filament binding [Evidence IDA] [PMID 3060468]; GO_process: GO:0000147 - actin cortical patch assembly [Evidence IMP] [PMID 18177206]; GO_process: GO:0000147 - actin cortical patch assembly [Evidence IMP] [PMID 2405279]; GO_process: GO:0051016 - barbed-end actin filament capping [Evidence IMP] [PMID 23333351]; GO_process: GO:0008104 - protein localization [Evidence IMP] [PMID 11668184]; GO_process: GO:0008104 - protein localization [Evidence IMP] [PMID 15798181]; Abp1p 3197494 ABP1 30035048 ABP1 Sugiyamaella lignohabitans Abp1p XP_018737916.1 3195101 D 796027 CDS AWJ20_3068 30035049 complement(3197608..3198534) B 1 NC_031674.1 uncharacterized protein 3198534 30035049 AWJ20_3068 Sugiyamaella lignohabitans uncharacterized protein XP_018737917.1 3197608 R 796027 CDS AWJ20_3069 30035050 complement(3200014..3200952) B 1 NC_031674.1 Conserved ribosomal protein P0 of the ribosomal stalk; involved in interaction between translational elongation factors and the ribosome; phosphorylated on serine 302; homologous to mammalian ribosomal protein LP0 and bacterial L10; GO_component: GO:0030686 - 90S preribosome [Evidence IDA] [PMID 12150911]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 19797078]; GO_component: GO:0022625 - cytosolic large ribosomal subunit [Evidence IDA] [PMID 22096102]; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 19797079]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA,IEA]; GO_function: GO:0070180 - large ribosomal subunit rRNA binding [Evidence IDA] [PMID 16164560]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IDA] [PMID 22096102]; GO_process: GO:0002181 - cytoplasmic translation [Evidence IMP] [PMID 8195220]; GO_process: GO:0000027 - ribosomal large subunit assembly [Evidence IMP] [PMID 8195220]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; GO_process: GO:0006414 - translational elongation [Evidence IEA]; ribosomal protein P0 3200952 RPP0 30035050 RPP0 Sugiyamaella lignohabitans ribosomal protein P0 XP_018737918.1 3200014 R 796027 CDS AWJ20_3070 30035052 3200429..3200761 B 1 NC_031674.1 uncharacterized protein 3200761 30035052 AWJ20_3070 Sugiyamaella lignohabitans uncharacterized protein XP_018737919.1 3200429 D 796027 CDS AWJ20_3071 30035053 complement(3201468..3202871) B 1 NC_031674.1 hypothetical protein; identified as a high-copy suppressor of a dbp5 mutation; GFD2 has a paralog, YDR514C, that arose from the whole genome duplication; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; Gfd2p 3202871 GFD2 30035053 GFD2 Sugiyamaella lignohabitans Gfd2p XP_018737920.1 3201468 R 796027 CDS AWJ20_3072 30035054 3208497..3209279 B 1 NC_031674.1 Cyclin-dependent kinase (CDK) catalytic subunit; master regulator of mitotic and meiotic cell cycles; alternately associates with G1 (CLNs), S and G2/M (CLBs) phase cyclins, which provide substrate specificity; regulates cell cycle and basal transcription, chromosome duplication and segregation, lipid biosynthesis, membrane trafficking, polarized growth, and morphogenesis; abundance increases in DNA replication stress; transcript induction in osmostress involves antisense RNA; GO_component: GO:0000235 - astral microtubule [Evidence IDA] [PMID 15256500]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 12554645]; GO_component: GO:0000307 - cyclin-dependent protein kinase holoenzyme complex [Evidence IDA] [PMID 1849458]; GO_component: GO:0000307 - cyclin-dependent protein kinase holoenzyme complex [Evidence IDA] [PMID 2142620]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 3312233]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 17560371]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14685274]; GO_component: GO:0005840 - ribosome [Evidence IDA] [PMID 16702403]; GO_component: GO:0005816 - spindle pole body [Evidence IDA] [PMID 12554645]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0000993 - RNA polymerase II core binding [Evidence IDA] [PMID 22689984]; GO_function: GO:0004693 - cyclin-dependent protein serine/threonine kinase activity [Evidence IEA]; GO_function: GO:0004693 - cyclin-dependent protein serine/threonine kinase activity [Evidence IDA] [PMID 2142620]; GO_function: GO:0042393 - histone binding [Evidence IDA] [PMID 20855529]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0004672 - protein kinase activity [Evidence IEA]; GO_function: GO:0004672 - protein kinase activity [Evidence IDA] [PMID 16319894]; GO_function: GO:0004674 - protein serine/threonine kinase activity [Evidence IEA,IEA]; GO_function: GO:0004674 - protein serine/threonine kinase activity [Evidence IDA] [PMID 22689984]; GO_function: GO:0004674 - protein serine/threonine kinase activity [Evidence IDA] [PMID 23314252]; GO_function: GO:0004674 - protein serine/threonine kinase activity [Evidence IDA] [PMID 24319056]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016772 - transferase activity, transferring phosphorus-containing groups [Evidence IEA]; GO_process: GO:0006370 - 7-methylguanosine mRNA capping [Evidence IMP] [PMID 22689984]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0006338 - chromatin remodeling [Evidence IMP] [PMID 20855529]; GO_process: GO:0000706 - meiotic DNA double-strand break processing [Evidence IGI] [PMID 20150422]; GO_process: GO:0007067 - mitotic nuclear division [Evidence IEA]; GO_process: GO:2001033 - negative regulation of double-strand break repair via nonhomologous end joining [Evidence IMP] [PMID 19699692]; GO_process: GO:0051447 - negative regulation of meiotic cell cycle [Evidence IMP] [PMID 12081645]; GO_process: GO:0045930 - negative regulation of mitotic cell cycle [Evidence IDA] [PMID 10074450]; GO_process: GO:0045875 - negative regulation of sister chromatid cohesion [Evidence IMP] [PMID 21549314]; GO_process: GO:0045892 - negative regulation of transcription, DNA-templated [Evidence IMP] [PMID 12081645]; GO_process: GO:0045892 - negative regulation of transcription, DNA-templated [Evidence IDA,IMP] [PMID 14993267]; GO_process: GO:0018105 - peptidyl-serine phosphorylation [Evidence IDA] [PMID 23314252]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; GO_process: GO:0070816 - phosphorylation of RNA polymerase II C-terminal domain [Evidence IDA] [PMID 22689984]; GO_process: GO:0051446 - positive regulation of meiotic cell cycle [Evidence IDA,IMP] [PMID 16814718]; GO_process: GO:0051446 - positive regulation of meiotic cell cycle [Evidence IMP] [PMID 2680756]; GO_process: GO:0045931 - positive regulation of mitotic cell cycle [Evidence IMP] [PMID 2165600]; GO_process: GO:0045931 - positive regulation of mitotic cell cycle [Evidence IMP] [PMID 7002718]; GO_process: GO:0010571 - positive regulation of nuclear cell cycle DNA replication [Evidence IMP] [PMID 12783856]; GO_process: GO:0010571 - positive regulation of nuclear cell cycle DNA replication [Evidence IDA,IMP] [PMID 14747467]; GO_process: GO:0010571 - positive regulation of nuclear cell cycle DNA replication [Evidence IMP] [PMID 4580573]; GO_process: GO:0010696 - positive regulation of spindle pole body separation [Evidence IGI,IMP] [PMID 16688214]; GO_process: GO:0010696 - positive regulation of spindle pole body separation [Evidence IMP] [PMID 8887667]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 22689984]; GO_process: GO:0045893 - positive regulation of transcription, DNA-templated [Evidence IDA,IGI] [PMID 1652372]; GO_process: GO:0010898 - positive regulation of triglyceride catabolic process [Evidence IGI,IMP] [PMID 19150427]; GO_process: GO:0006468 - protein phosphorylation [Evidence IEA]; GO_process: GO:0006468 - protein phosphorylation [Evidence IDA] [PMID 16319894]; GO_process: GO:0010568 - regulation of budding cell apical bud growth [Evidence IGI,IMP] [PMID 17417630]; GO_process: GO:0010569 - regulation of double-strand break repair via homologous recombination [Evidence IMP] [PMID 15496928]; GO_process: GO:0010570 - regulation of filamentous growth [Evidence IMP] [PMID 9891070]; GO_process: GO:0032880 - regulation of protein localization [Evidence IMP] [PMID 19188495]; GO_process: GO:0032880 - regulation of protein localization [Evidence IMP] [PMID 20702586]; GO_process: GO:0007130 - synaptonemal complex assembly [Evidence IMP] [PMID 20825495]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IMP] [PMID 22767578]; cyclin-dependent serine/threonine-protein kinase CDC28 3209279 CDC28 30035054 CDC28 Sugiyamaella lignohabitans cyclin-dependent serine/threonine-protein kinase CDC28 XP_018737921.1 3208497 D 796027 CDS AWJ20_3073 30035055 3210242..3211429 B 1 NC_031674.1 Fe(II)-dependent sulfonate/alpha-ketoglutarate dioxygenase; involved in sulfonate catabolism for use as a sulfur source; contains sequence that resembles a J domain (typified by the E. coli DnaJ protein); induced by sulphur starvation; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0051213 - dioxygenase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0000907 - sulfonate dioxygenase activity [Evidence IDA] [PMID 10482536]; GO_process: GO:0046306 - alkanesulfonate catabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0044273 - sulfur compound catabolic process [Evidence IMP] [PMID 10482536]; Jlp1p 3211429 JLP1 30035055 JLP1 Sugiyamaella lignohabitans Jlp1p XP_018737922.1 3210242 D 796027 CDS AWJ20_3074 30035056 3214946..3217912 B 1 NC_031674.1 hypothetical protein; green fluorescent protein (GFP)-fusion protein localizes to the cell periphery, cytoplasm, bud, and bud neck; potential Cdc28p substrate; similar to Skg4p; relocalizes from bud neck to cytoplasm upon DNA replication stress; SKG3 has a paralog, CAF120, that arose from the whole genome duplication; GO_component: GO:0005933 - cellular bud [Evidence IDA] [PMID 14562095]; GO_component: GO:0005935 - cellular bud neck [Evidence IEA]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 14562095]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 22842922]; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 22842922]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; Skg3p 3217912 SKG3 30035056 SKG3 Sugiyamaella lignohabitans Skg3p XP_018737923.1 3214946 D 796027 CDS AWJ20_3075 30035057 3219157..3220383 B 1 NC_031674.1 Ribonucleotide-diphosphate reductase (RNR), small subunit; the RNR complex catalyzes the rate-limiting step in dNTP synthesis and is regulated by DNA replication and DNA damage checkpoint pathways via localization of the small subunits; RNR2 has a paralog, RNR4, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 12732713]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 9315670]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 12732713]; GO_component: GO:0005971 - ribonucleoside-diphosphate reductase complex [Evidence IDA] [PMID 10716984]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0004748 - ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor [Evidence IEA]; GO_function: GO:0004748 - ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor [Evidence IDA] [PMID 10535923]; GO_function: GO:0004748 - ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor [Evidence IDA] [PMID 10716984]; GO_process: GO:0006260 - DNA replication [Evidence IEA,IEA]; GO_process: GO:0009186 - deoxyribonucleoside diphosphate metabolic process [Evidence IEA]; GO_process: GO:0009263 - deoxyribonucleotide biosynthetic process [Evidence IDA] [PMID 10535923]; GO_process: GO:0009263 - deoxyribonucleotide biosynthetic process [Evidence IDA] [PMID 5459124]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; ribonucleotide-diphosphate reductase subunit RNR2 3220383 RNR2 30035057 RNR2 Sugiyamaella lignohabitans ribonucleotide-diphosphate reductase subunit RNR2 XP_018737924.1 3219157 D 796027 CDS AWJ20_3076 30035058 complement(3220707..3223418) B 1 NC_031674.1 transcriptional regulator SWI6 3223418 SWI6 30035058 SWI6 Sugiyamaella lignohabitans transcriptional regulator SWI6 XP_018737925.1 3220707 R 796027 CDS AWJ20_3077 30035059 join(3224314..3224428,3224485..3225455) B 1 NC_031674.1 Multivesicular body (MVB) protein; involved in endosomal protein sorting; regulates Vps4p activity by promoting its oligomerization; has an N-terminal Vps60- and Did2- binding domain, a linker region, and a C-terminal Vps4p binding domain; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005768 - endosome [Evidence IEA]; GO_component: GO:0005768 - endosome [Evidence IDA] [PMID 14562095]; GO_component: GO:0010008 - endosome membrane [Evidence IEA]; GO_component: GO:0010008 - endosome membrane [Evidence IDA] [PMID 16505166]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005771 - multivesicular body [Evidence IDA] [PMID 14701806]; GO_function: GO:0001671 - ATPase activator activity [Evidence IDA,IMP] [PMID 16505166]; GO_function: GO:0001671 - ATPase activator activity [Evidence IDA] [PMID 16601096]; GO_process: GO:0045324 - late endosome to vacuole transport [Evidence IMP,IPI] [PMID 12953057]; GO_process: GO:0032511 - late endosome to vacuole transport via multivesicular body sorting pathway [Evidence IGI] [PMID 16505166]; GO_process: GO:0006869 - lipid transport [Evidence IEA]; GO_process: GO:0032461 - positive regulation of protein oligomerization [Evidence IDA] [PMID 16505166]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Vta1p 3225455 VTA1 30035059 VTA1 Sugiyamaella lignohabitans Vta1p XP_018737926.1 3224314 D 796027 CDS AWJ20_3078 30035060 3229597..3230532 B 1 NC_031674.1 Alpha subunit of the translation initiation factor eIF2; eIF2 is involved in identification of the start codon; phosphorylation of Ser51 is required for regulation of translation by inhibiting the exchange of GDP for GTP; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0033290 - eukaryotic 48S preinitiation complex [Evidence IDA] [PMID 17242201]; GO_component: GO:0005850 - eukaryotic translation initiation factor 2 complex [Evidence IEA]; GO_component: GO:0005850 - eukaryotic translation initiation factor 2 complex [Evidence IMP,ISS] [PMID 2649894]; GO_component: GO:0043614 - multi-eIF complex [Evidence IDA] [PMID 11018020]; GO_component: GO:0043614 - multi-eIF complex [Evidence IDA] [PMID 15838098]; GO_component: GO:0005840 - ribosome [Evidence TAS] [PMID 9841679]; GO_function: GO:0003723 - RNA binding [Evidence IEA,IEA]; GO_function: GO:0003743 - translation initiation factor activity [Evidence IEA,IEA]; GO_function: GO:0003743 - translation initiation factor activity [Evidence TAS] [PMID 9841679]; GO_process: GO:0001731 - formation of translation preinitiation complex [Evidence IDA] [PMID 12008673]; GO_process: GO:0006412 - translation [Evidence IEA]; GO_process: GO:0006413 - translational initiation [Evidence IEA]; GO_process: GO:0006413 - translational initiation [Evidence TAS] [PMID 9841679]; translation initiation factor eIF2 subunit alpha 3230532 SUI2 30035060 SUI2 Sugiyamaella lignohabitans translation initiation factor eIF2 subunit alpha XP_018737927.1 3229597 D 796027 CDS AWJ20_3079 30035061 3231101..3233791 B 1 NC_031674.1 uncharacterized protein 3233791 30035061 AWJ20_3079 Sugiyamaella lignohabitans uncharacterized protein XP_018737928.1 3231101 D 796027 CDS AWJ20_3080 30035063 3234762..3235421 B 1 NC_031674.1 hypothetical protein; inhibits haploid invasive growth when overexpressed; synthetically lethal with phospholipase C (PLC1); expression induced by mild heat-stress on a non-fermentable carbon source, upon entry into stationary phase and upon nitrogen deprivation; repressed by inosine and choline in an Opi1p-dependent manner; highly conserved from bacteria to human; Memo, the human homolog, is an ErbB2 interacting protein with an essential function in cell motility; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22412880]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22412880]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; Mho1p 3235421 MHO1 30035063 MHO1 Sugiyamaella lignohabitans Mho1p XP_018737929.1 3234762 D 796027 CDS AWJ20_3081 30035064 3236205..3238370 B 1 NC_031674.1 Beta-adaptin; large subunit of the clathrin associated protein complex (AP-2); involved in vesicle mediated transport; similar to mammalian beta-chain of the clathrin associated protein complex; GO_component: GO:0030122 - AP-2 adaptor complex [Evidence IDA] [PMID 10564262]; GO_component: GO:0005905 - coated pit [Evidence IEA,IEA]; GO_component: GO:0030139 - endocytic vesicle [Evidence IDA] [PMID 22190733]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0030117 - membrane coat [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0008565 - protein transporter activity [Evidence IEA]; GO_process: GO:0006897 - endocytosis [Evidence IEA]; GO_process: GO:0006886 - intracellular protein transport [Evidence IEA]; GO_process: GO:0015031 - protein transport [Evidence IEA,IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IEA]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IC] [PMID 22190733]; Apl1p 3238370 APL1 30035064 APL1 Sugiyamaella lignohabitans Apl1p XP_018737930.1 3236205 D 796027 CDS AWJ20_3082 30035065 complement(3238452..3241778) B 1 NC_031674.1 3'-5' DNA helicase that has DNA strand annealing activity; helicase activity is stimulated by fork structure and 3'-tail length of substrates; acts with Rad4p in nucleotide-excision repair; belongs to the widely conserved RecQ family of proteins which are involved in maintaining genomic integrity; similar to the human RecQ4p implicated in Rothmund-Thomson syndrome (RTS); GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0043140 - ATP-dependent 3'-5' DNA helicase activity [Evidence IDA] [PMID 23026052]; GO_function: GO:0008026 - ATP-dependent helicase activity [Evidence IEA]; GO_function: GO:0004386 - helicase activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0032508 - DNA duplex unwinding [Evidence IDA] [PMID 23026052]; GO_process: GO:0000733 - DNA strand renaturation [Evidence IDA] [PMID 23026052]; GO_process: GO:0006289 - nucleotide-excision repair [Evidence IGI,IPI] [PMID 24682993]; GO_process: GO:0006950 - response to stress [Evidence IEA]; Hrq1p 3241778 HRQ1 30035065 HRQ1 Sugiyamaella lignohabitans Hrq1p XP_018737931.1 3238452 R 796027 CDS AWJ20_3083 30035066 complement(3241971..3244145) B 1 NC_031674.1 Cytoplasmic response regulator; part of a two-component signal transducer that mediates osmosensing via a phosphorelay mechanism; required for mitophagy; dephosphorylated form is degraded by the ubiquitin-proteasome system; potential Cdc28p substrate; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14665464]; GO_function: GO:0031435 - mitogen-activated protein kinase kinase kinase binding [Evidence IPI] [PMID 9482735]; GO_function: GO:0000156 - phosphorelay response regulator activity [Evidence IEA]; GO_function: GO:0000156 - phosphorelay response regulator activity [Evidence IMP] [PMID 8183345]; GO_function: GO:0042803 - protein homodimerization activity [Evidence IDA] [PMID 18573873]; GO_function: GO:0030295 - protein kinase activator activity [Evidence IDA,IMP] [PMID 9482735]; GO_process: GO:0000167 - activation of MAPKKK activity involved in osmosensory signaling pathway [Evidence IMP] [PMID 18573873]; GO_process: GO:0000167 - activation of MAPKKK activity involved in osmosensory signaling pathway [Evidence IGI] [PMID 9482735]; GO_process: GO:0035556 - intracellular signal transduction [Evidence IEA]; GO_process: GO:0007234 - osmosensory signaling via phosphorelay pathway [Evidence IDA] [PMID 8808622]; GO_process: GO:0000160 - phosphorelay signal transduction system [Evidence IEA,IEA]; GO_process: GO:2000251 - positive regulation of actin cytoskeleton reorganization [Evidence IMP] [PMID 19633059]; GO_process: GO:0031954 - positive regulation of protein autophosphorylation [Evidence IDA] [PMID 9482735]; mitogen-activated protein kinase kinase kinase SSK1 3244145 SSK1 30035066 SSK1 Sugiyamaella lignohabitans mitogen-activated protein kinase kinase kinase SSK1 XP_018737932.1 3241971 R 796027 CDS AWJ20_3084 30035067 complement(3245037..3248081) B 1 NC_031674.1 bHLH protein with similarity to myc-family transcription factors; overexpression confers hyperfilamentous growth and suppresses the pseudohyphal filamentation defect of a diploid mep1 mep2 homozygous null mutant; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0046983 - protein dimerization activity [Evidence IEA]; GO_function: GO:0003700 - sequence-specific DNA binding transcription factor activity [Evidence ISS] [PMID 10710415]; GO_process: GO:0007124 - pseudohyphal growth [Evidence IGI] [PMID 9832522]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Hms1p 3248081 HMS1 30035067 HMS1 Sugiyamaella lignohabitans Hms1p XP_018737933.1 3245037 R 796027 CDS AWJ20_3085 30035068 3251457..3251789 B 1 NC_031674.1 Ubiquitin-conjugating enzyme (E2); key E2 partner with Ubc1p for the anaphase-promoting complex (APC); mediates degradation of abnormal or excess proteins, including calmodulin and histone H3; regulates levels of DNA Polymerase-{alpha} to promote efficient and accurate DNA replication; interacts with many SCF ubiquitin protein ligases; component of the cellular stress response; UBC4 has a paralog, UBC5, that arose from the whole genome duplication; GO_component: GO:0000502 - proteasome complex [Evidence IPI] [PMID 10848595]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0016881 - acid-amino acid ligase activity [Evidence IEA]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0030674 - protein binding, bridging [Evidence IDA] [PMID 11788821]; GO_function: GO:0043130 - ubiquitin binding [Evidence IDA,IMP] [PMID 21357418]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence IEA]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence IDA] [PMID 2154373]; GO_process: GO:0034605 - cellular response to heat [Evidence IDA] [PMID 2154373]; GO_process: GO:0006513 - protein monoubiquitination [Evidence IDA] [PMID 8391479]; GO_process: GO:0000209 - protein polyubiquitination [Evidence IDA] [PMID 2154373]; GO_process: GO:0016567 - protein ubiquitination [Evidence IEA]; GO_process: GO:0016567 - protein ubiquitination [Evidence IDA] [PMID 16926149]; GO_process: GO:0006950 - response to stress [Evidence IEA]; GO_process: GO:0043162 - ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway [Evidence IMP] [PMID 11788821]; E2 ubiquitin-conjugating protein UBC4 3251789 UBC4 30035068 UBC4 Sugiyamaella lignohabitans E2 ubiquitin-conjugating protein UBC4 XP_018737934.1 3251457 D 796027 CDS AWJ20_3086 30035069 3253870..3257805 B 1 NC_031674.1 Endocytic protein; involved in a network of interactions with other endocytic proteins, binds membranes in a ubiquitin-dependent manner, may also bind ubiquitinated membrane-associated proteins; interacts with Cmk2 and functions upstream of CMK2 in regulating non-apoptotic cell death; GO_component: GO:0030479 - actin cortical patch [Evidence IDA] [PMID 10954428]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 11452010]; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 11452010]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 19053807]; GO_function: GO:0005509 - calcium ion binding [Evidence IEA]; GO_function: GO:0043130 - ubiquitin binding [Evidence IDA] [PMID 16563434]; GO_process: GO:0006897 - endocytosis [Evidence IEA]; GO_process: GO:0006897 - endocytosis [Evidence IMP] [PMID 10954428]; GO_process: GO:0030968 - endoplasmic reticulum unfolded protein response [Evidence IMP] [PMID 16582425]; Ede1p 3257805 EDE1 30035069 EDE1 Sugiyamaella lignohabitans Ede1p XP_018737935.1 3253870 D 796027 CDS AWJ20_3087 30035070 complement(3258889..3259284) B 1 NC_031674.1 exodeoxyribonuclease DIN7 3259284 DIN7 30035070 DIN7 Sugiyamaella lignohabitans exodeoxyribonuclease DIN7 XP_018737936.1 3258889 R 796027 CDS AWJ20_3088 30035071 3260052..3262991 B 1 NC_031674.1 Component of the Sec23p-Sfb3p heterodimer of the COPII vesicle coat; COPII coat is required for cargo selection during vesicle formation in ER to Golgi transport; homologous to Sec24p and Sfb2p; GO_component: GO:0030127 - COPII vesicle coat [Evidence IEA]; GO_component: GO:0030127 - COPII vesicle coat [Evidence IDA] [PMID 11086000]; GO_component: GO:0030127 - COPII vesicle coat [Evidence IDA] [PMID 12426382]; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 19053807]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0005048 - signal sequence binding [Evidence ISS] [PMID 12941277]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0006888 - ER to Golgi vesicle-mediated transport [Evidence IEA]; GO_process: GO:0090110 - cargo loading into COPII-coated vesicle [Evidence IDA] [PMID 12426382]; GO_process: GO:0090110 - cargo loading into COPII-coated vesicle [Evidence IDA,IMP] [PMID 12941277]; GO_process: GO:0006886 - intracellular protein transport [Evidence IEA]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IEA]; Sfb3p 3262991 SFB3 30035071 SFB3 Sugiyamaella lignohabitans Sfb3p XP_018737937.1 3260052 D 796027 CDS AWJ20_3089 30035072 complement(3263091..3263573) B 1 NC_031674.1 Molybdopterin-converting factor subunit 2 3263573 30035072 AWJ20_3089 Sugiyamaella lignohabitans Molybdopterin-converting factor subunit 2 XP_018737938.1 3263091 R 796027 CDS AWJ20_3090 30035074 3265851..3267047 B 1 NC_031674.1 Poly(A+) RNA-binding protein; key surveillance factor for the selective export of spliced mRNAs from the nucleus to the cytoplasm; preference for intron-containing genes; similar to Npl3p; HRB1 has a paralog, GBP2, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 9499403]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9499403]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IDA] [PMID 14676199]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0071028 - nuclear mRNA surveillance [Evidence IMP] [PMID 24452287]; GO_process: GO:0016973 - poly(A)+ mRNA export from nucleus [Evidence IPI] [PMID 14769921]; Hrb1p 3267047 HRB1 30035074 HRB1 Sugiyamaella lignohabitans Hrb1p XP_018737939.1 3265851 D 796027 CDS AWJ20_3091 30035075 complement(3267387..3268046) B 1 NC_031674.1 Component of the HAT/Core module of the SAGA, SLIK, and ADA complexes; HAT/Core module also contains Gcn5p, Ngg1p, and Ada2p; binds methylated histone H3K4; involved in transcriptional regulation through SAGA and TBP recruitment to target promoters and H3 acetylation; GO_component: GO:0005671 - Ada2/Gcn5/Ada3 transcription activator complex [Evidence IMP,IPI] [PMID 21734642]; GO_component: GO:0000124 - SAGA complex [Evidence IDA] [PMID 12052880]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0001135 - RNA polymerase II transcription factor recruiting transcription factor activity [Evidence IMP] [PMID 21685874]; GO_function: GO:0035064 - methylated histone binding [Evidence IDA] [PMID 21685874]; GO_process: GO:0034629 - cellular protein complex localization [Evidence IMP] [PMID 21685874]; GO_process: GO:0034613 - cellular protein localization [Evidence IMP] [PMID 22224423]; GO_process: GO:0016568 - chromatin modification [Evidence IEA]; GO_process: GO:0070868 - heterochromatin organization involved in chromatin silencing [Evidence IMP] [PMID 24307402]; GO_process: GO:0044154 - histone H3-K14 acetylation [Evidence IMP] [PMID 21685874]; GO_process: GO:0043971 - histone H3-K18 acetylation [Evidence IMP] [PMID 21685874]; GO_process: GO:0043970 - histone H3-K9 acetylation [Evidence IMP] [PMID 21685874]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 21685874]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Sgf29p 3268046 SGF29 30035075 SGF29 Sugiyamaella lignohabitans Sgf29p XP_018737940.1 3267387 R 796027 CDS AWJ20_3092 30035076 complement(3268961..3270814) B 1 NC_031674.1 Phosphatidylglycerolphosphate synthase; catalyzes the synthesis of phosphatidylglycerolphosphate from CDP-diacylglycerol and sn-glycerol 3-phosphate in the first committed and rate-limiting step of cardiolipin biosynthesis; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 9799363]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0008444 - CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase activity [Evidence IEA]; GO_function: GO:0008444 - CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase activity [Evidence IMP] [PMID 9545322]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016780 - phosphotransferase activity, for other substituted phosphate groups [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0032049 - cardiolipin biosynthetic process [Evidence IMP] [PMID 9545322]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0006655 - phosphatidylglycerol biosynthetic process [Evidence IEA]; GO_process: GO:0008654 - phospholipid biosynthetic process [Evidence IEA,IEA]; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 3270814 PGS1 30035076 PGS1 Sugiyamaella lignohabitans CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase XP_018737941.1 3268961 R 796027 CDS AWJ20_3093 30035077 complement(3272178..3272846) B 1 NC_031674.1 Mitochondrial ribosomal protein of the small subunit; essential for viability, unlike most other mitoribosomal proteins; GO_component: GO:0005763 - mitochondrial small ribosomal subunit [Evidence IDA] [PMID 12392552]; GO_component: GO:0005763 - mitochondrial small ribosomal subunit [Evidence IDA] [PMID 9151978]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA,IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IDA] [PMID 12392552]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IDA] [PMID 9151978]; GO_process: GO:0032543 - mitochondrial translation [Evidence IC] [PMID 12392552]; GO_process: GO:0032543 - mitochondrial translation [Evidence IC] [PMID 9151978]; GO_process: GO:0006412 - translation [Evidence IEA]; mitochondrial 37S ribosomal protein YmS18 3272846 MRPS18 30035077 MRPS18 Sugiyamaella lignohabitans mitochondrial 37S ribosomal protein YmS18 XP_018737942.1 3272178 R 796027 CDS AWJ20_3094 30035078 3275482..3276231 B 1 NC_031674.1 DL-glycerol-3-phosphate phosphatase involved in glycerol biosynthesis; also known as glycerol-1-phosphatase; induced in response to hyperosmotic or oxidative stress, and during diauxic shift; GPP2 has a paralog, GPP1, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0000121 - glycerol-1-phosphatase activity [Evidence IEA]; GO_function: GO:0000121 - glycerol-1-phosphatase activity [Evidence IDA] [PMID 8662716]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA,IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_process: GO:0044262 - cellular carbohydrate metabolic process [Evidence IDA] [PMID 8662716]; GO_process: GO:0016311 - dephosphorylation [Evidence IEA]; GO_process: GO:0006114 - glycerol biosynthetic process [Evidence IMP] [PMID 11058591]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0006970 - response to osmotic stress [Evidence IDA] [PMID 8662716]; GO_process: GO:0006950 - response to stress [Evidence IEA]; glycerol-1-phosphatase HOR2 3276231 GPP2 30035078 GPP2 Sugiyamaella lignohabitans glycerol-1-phosphatase HOR2 XP_018737943.1 3275482 D 796027 CDS AWJ20_3095 30035079 complement(3276710..3278713) B 1 NC_031674.1 serine/threonine protein kinase CLA4 3278713 CLA4 30035079 CLA4 Sugiyamaella lignohabitans serine/threonine protein kinase CLA4 XP_018737944.1 3276710 R 796027 CDS AWJ20_3096 30035080 complement(3279105..3279605) B 1 NC_031674.1 uncharacterized protein 3279605 30035080 AWJ20_3096 Sugiyamaella lignohabitans uncharacterized protein XP_018737945.1 3279105 R 796027 CDS AWJ20_3097 30035081 complement(3283330..3286572) B 1 NC_031674.1 3'-5' DNA helicase involved in error-free bypass of DNA lesions; binds flap DNA in error-free bypass pathway, stimulates activity of Rad27p and Dna2p; prevents crossovers between ectopic sequences by removing substrates for Mus81-Mms4 or Rad1-Rad10 cleavage; similar to FANCM human Fanconi anemia complementation group protein that with MHF complex is involved in stabilizing and remodeling blocked replication forks; member of SF2 DExD/H superfamily of helicases; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 10880470]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 19995966]; GO_function: GO:0043138 - 3'-5' DNA helicase activity [Evidence IDA] [PMID 15634678]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0070336 - flap-structured DNA binding [Evidence IDA] [PMID 19181670]; GO_function: GO:0004386 - helicase activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA,IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006281 - DNA repair [Evidence IEA]; GO_process: GO:0033567 - DNA replication, Okazaki fragment processing [Evidence IGI] [PMID 19181670]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0036297 - interstrand cross-link repair [Evidence IGI] [PMID 22912599]; GO_process: GO:0060543 - negative regulation of strand invasion [Evidence IDA,IMP] [PMID 19136626]; GO_process: GO:0000725 - recombinational repair [Evidence IMP] [PMID 19995966]; Mph1p 3286572 MPH1 30035081 MPH1 Sugiyamaella lignohabitans Mph1p XP_018737946.1 3283330 R 796027 CDS AWJ20_3098 30035082 complement(3286772..3288805) B 1 NC_031674.1 Apyrase with wide substrate specificity; helps prevent inhibition of glycosylation by hydrolyzing nucleoside tri- and diphosphates that inhibit glycotransferases; partially redundant with Gda1p; mediates adenovirus E4orf4-induced toxicity; GO_component: GO:0030137 - COPI-coated vesicle [Evidence IDA] [PMID 14562095]; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA,IEA]; GO_component: GO:0005794 - Golgi apparatus [Evidence IDA] [PMID 14562095]; GO_component: GO:0000139 - Golgi membrane [Evidence IDA] [PMID 10551827]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0016020 - membrane [Evidence IDA] [PMID 10409709]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA,IEA]; GO_function: GO:0017110 - nucleoside-diphosphatase activity [Evidence IDA] [PMID 10409709]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IDA] [PMID 10409709]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0006486 - protein glycosylation [Evidence IEA]; GO_process: GO:0006486 - protein glycosylation [Evidence IMP] [PMID 10409709]; GO_process: GO:0006665 - sphingolipid metabolic process [Evidence IEA]; Ynd1p 3288805 YND1 30035082 YND1 Sugiyamaella lignohabitans Ynd1p XP_018737947.1 3286772 R 796027 CDS AWJ20_3099 30035083 complement(3289724..3290842) B 1 NC_031674.1 cycloisomerase 2 family 3290842 30035083 AWJ20_3099 Sugiyamaella lignohabitans cycloisomerase 2 family XP_018737948.1 3289724 R 796027 CDS AWJ20_3100 30035086 3291903..3294149 B 1 NC_031674.1 Essential 100kDa subunit of the exocyst complex; the exocyst mediates polarized targeting and tethering of post-Golgi secretory vesicles to active sites of exocytosis at the plasma membrane prior to SNARE-mediated fusion; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0000145 - exocyst [Evidence IDA] [PMID 8978675]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 19053807]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006893 - Golgi to plasma membrane transport [Evidence IGI,IMP] [PMID 7026045]; GO_process: GO:0006887 - exocytosis [Evidence IEA,IEA]; GO_process: GO:0006887 - exocytosis [Evidence IMP] [PMID 6996832]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0048278 - vesicle docking [Evidence IEA]; GO_process: GO:0090522 - vesicle tethering involved in exocytosis [Evidence IC] [PMID 8978675]; Sec10p 3294149 SEC10 30035086 SEC10 Sugiyamaella lignohabitans Sec10p XP_018737949.1 3291903 D 796027 CDS AWJ20_3101 30035087 complement(3294628..3296274) B 1 NC_031674.1 Putative lipid phosphatase of the endoplasmic reticulum; shows Mn2+ dependence and may affect Ca2+ signaling; mutants display actin and general growth defects and pleiotropic defects in cell cycle progression and organelle distribution; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 18332110]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12524434]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA,IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006281 - DNA repair [Evidence IMP] [PMID 7969142]; GO_process: GO:0030036 - actin cytoskeleton organization [Evidence IMP] [PMID 11285273]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0030026 - cellular manganese ion homeostasis [Evidence IGI,IMP] [PMID 9560393]; GO_process: GO:0016311 - dephosphorylation [Evidence IMP] [PMID 18332110]; putative lipid phosphatase CDC1 3296274 CDC1 30035087 CDC1 Sugiyamaella lignohabitans putative lipid phosphatase CDC1 XP_018737950.1 3294628 R 796027 CDS AWJ20_3102 30035088 3296714..3297907 B 1 NC_031674.1 uncharacterized protein 3297907 30035088 AWJ20_3102 Sugiyamaella lignohabitans uncharacterized protein XP_018737951.1 3296714 D 796027 CDS AWJ20_3103 30035089 3304581..3305003 B 1 NC_031674.1 uncharacterized protein 3305003 30035089 AWJ20_3103 Sugiyamaella lignohabitans uncharacterized protein XP_018737952.1 3304581 D 796027 CDS AWJ20_3104 30035090 3306410..3308776 B 1 NC_031674.1 pheromone-regulated protein PRM10 3308776 PRM10 30035090 PRM10 Sugiyamaella lignohabitans pheromone-regulated protein PRM10 XP_018737953.1 3306410 D 796027 CDS AWJ20_3105 30035091 3309079..3309489 B 1 NC_031674.1 pheromone-regulated protein PRM10 3309489 PRM10 30035091 PRM10 Sugiyamaella lignohabitans pheromone-regulated protein PRM10 XP_018737954.1 3309079 D 796027 CDS AWJ20_3106 30035092 3314654..3316306 B 1 NC_031674.1 Component of the exomer complex; exomer also contains Csh6p, Bch1p, Bch2p, and Bud7p and is involved in export of selected proteins, such as chitin synthase Chs3p, from the Golgi to the plasma membrane; Chs5p is the only protein with a BRCT domain that is not localized to the nucleus; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 24390141]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 9008706]; GO_component: GO:0034044 - exomer complex [Evidence IDA] [PMID 17000877]; GO_component: GO:0034044 - exomer complex [Evidence IDA] [PMID 23000721]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 19053807]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006893 - Golgi to plasma membrane transport [Evidence IMP] [PMID 11879634]; GO_process: GO:0006893 - Golgi to plasma membrane transport [Evidence IGI,IMP] [PMID 16498409]; GO_process: GO:0030476 - ascospore wall assembly [Evidence IMP] [PMID 9111317]; GO_process: GO:0006039 - cell wall chitin catabolic process [Evidence IMP] [PMID 9111317]; GO_process: GO:0000282 - cellular bud site selection [Evidence IMP] [PMID 16498409]; GO_process: GO:0000747 - conjugation with cellular fusion [Evidence IMP] [PMID 9111317]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IDA] [PMID 17000877]; GO_process: GO:0006810 - transport [Evidence IEA]; Chs5p 3316306 CHS5 30035092 CHS5 Sugiyamaella lignohabitans Chs5p XP_018737955.1 3314654 D 796027 CDS AWJ20_3107 30035093 complement(3316621..3316878) B 1 NC_031674.1 Subunit F of the V1 peripheral membrane domain of V-ATPase; part of the electrogenic proton pump found throughout the endomembrane system; required for the V1 domain to assemble onto the vacuolar membrane; the V1 peripheral membrane domain of vacuolar H+-ATPase (V-ATPase) has eight subunits; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence TAS] [PMID 11780757]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0033180 - proton-transporting V-type ATPase, V1 domain [Evidence IEA]; GO_component: GO:0000221 - vacuolar proton-transporting V-type ATPase, V1 domain [Evidence TAS] [PMID 10224039]; GO_component: GO:0000221 - vacuolar proton-transporting V-type ATPase, V1 domain [Evidence TAS] [PMID 9442887]; GO_function: GO:0046961 - proton-transporting ATPase activity, rotational mechanism [Evidence IEA]; GO_function: GO:0046961 - proton-transporting ATPase activity, rotational mechanism [Evidence TAS] [PMID 10224039]; GO_function: GO:0046961 - proton-transporting ATPase activity, rotational mechanism [Evidence TAS] [PMID 9442887]; GO_process: GO:0015991 - ATP hydrolysis coupled proton transport [Evidence IEA]; GO_process: GO:0034220 - ion transmembrane transport [Evidence IEA]; GO_process: GO:0006811 - ion transport [Evidence IEA]; GO_process: GO:0015992 - proton transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0007035 - vacuolar acidification [Evidence TAS] [PMID 10224039]; GO_process: GO:0007035 - vacuolar acidification [Evidence TAS] [PMID 9442887]; H(+)-transporting V1 sector ATPase subunit F 3316878 VMA7 30035093 VMA7 Sugiyamaella lignohabitans H(+)-transporting V1 sector ATPase subunit F XP_018737956.1 3316621 R 796027 CDS AWJ20_3108 30035094 3319988..3320845 B 1 NC_031674.1 uncharacterized protein 3320845 30035094 AWJ20_3108 Sugiyamaella lignohabitans uncharacterized protein XP_018737957.1 3319988 D 796027 CDS AWJ20_3109 30035095 complement(3320949..3322760) B 1 NC_031674.1 homeodomain family transcription factor STE12 3322760 STE12 30035095 STE12 Sugiyamaella lignohabitans homeodomain family transcription factor STE12 XP_018737958.1 3320949 R 796027 CDS AWJ20_3110 30035097 complement(3328804..3329721) B 1 NC_031674.1 uncharacterized protein 3329721 30035097 AWJ20_3110 Sugiyamaella lignohabitans uncharacterized protein XP_018737959.1 3328804 R 796027 CDS AWJ20_3111 30035098 3331796..3334729 B 1 NC_031674.1 Phosphatidylethanolamine methyltransferase (PEMT); catalyzes the first step in the conversion of phosphatidylethanolamine to phosphatidylcholine during the methylation pathway of phosphatidylcholine biosynthesis; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 14562095]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 2445736]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_function: GO:0008168 - methyltransferase activity [Evidence IEA]; GO_function: GO:0004608 - phosphatidylethanolamine N-methyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0004608 - phosphatidylethanolamine N-methyltransferase activity [Evidence IDA,IGI] [PMID 2445736]; GO_function: GO:0004608 - phosphatidylethanolamine N-methyltransferase activity [Evidence IDA,IMP] [PMID 3066687]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0032259 - methylation [Evidence IEA]; GO_process: GO:0006656 - phosphatidylcholine biosynthetic process [Evidence IEA]; GO_process: GO:0006656 - phosphatidylcholine biosynthetic process [Evidence IMP] [PMID 23000174]; GO_process: GO:0006656 - phosphatidylcholine biosynthetic process [Evidence IDA,IGI] [PMID 2445736]; GO_process: GO:0006656 - phosphatidylcholine biosynthetic process [Evidence IDA,IMP] [PMID 3066687]; GO_process: GO:0008654 - phospholipid biosynthetic process [Evidence IEA]; GO_process: GO:0006644 - phospholipid metabolic process [Evidence IEA]; phosphatidylethanolamine N-methyltransferase 3334729 CHO2 30035098 CHO2 Sugiyamaella lignohabitans phosphatidylethanolamine N-methyltransferase XP_018737960.1 3331796 D 796027 CDS AWJ20_3112 30035099 complement(3334866..3335684) B 1 NC_031674.1 Exosome non-catalytic core component; involved in 3'-5' RNA processing and degradation in both the nucleus and the cytoplasm; has similarity to E. coli RNase PH and to human hMtr3p (EXOSC6); GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0000177 - cytoplasmic exosome (RNase complex) [Evidence IDA] [PMID 10465791]; GO_component: GO:0000177 - cytoplasmic exosome (RNase complex) [Evidence IDA] [PMID 19046973]; GO_component: GO:0000178 - exosome (RNase complex) [Evidence IEA]; GO_component: GO:0000176 - nuclear exosome (RNase complex) [Evidence IDA] [PMID 10465791]; GO_component: GO:0000176 - nuclear exosome (RNase complex) [Evidence IDA] [PMID 19046973]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 8534909]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0034475 - U4 snRNA 3'-end processing [Evidence IMP] [PMID 10611222]; GO_process: GO:0000467 - exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 10465791]; GO_process: GO:0000467 - exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 10508172]; GO_process: GO:0070651 - nonfunctional rRNA decay [Evidence IC] [PMID 10465791]; GO_process: GO:0071028 - nuclear mRNA surveillance [Evidence IMP] [PMID 11030620]; GO_process: GO:0071039 - nuclear polyadenylation-dependent CUT catabolic process [Evidence IMP] [PMID 18591258]; GO_process: GO:0071042 - nuclear polyadenylation-dependent mRNA catabolic process [Evidence IC] [PMID 10465791]; GO_process: GO:0071035 - nuclear polyadenylation-dependent rRNA catabolic process [Evidence IMP] [PMID 10465791]; GO_process: GO:0071035 - nuclear polyadenylation-dependent rRNA catabolic process [Evidence IMP] [PMID 18007593]; GO_process: GO:0071038 - nuclear polyadenylation-dependent tRNA catabolic process [Evidence IDA] [PMID 15828860]; GO_process: GO:0071038 - nuclear polyadenylation-dependent tRNA catabolic process [Evidence IDA] [PMID 15935758]; GO_process: GO:0071038 - nuclear polyadenylation-dependent tRNA catabolic process [Evidence IDA] [PMID 17643380]; GO_process: GO:0070478 - nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay [Evidence IC] [PMID 10465791]; GO_process: GO:0034427 - nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5' [Evidence IC] [PMID 10465791]; GO_process: GO:0070481 - nuclear-transcribed mRNA catabolic process, non-stop decay [Evidence IC] [PMID 10465791]; GO_process: GO:0071051 - polyadenylation-dependent snoRNA 3'-end processing [Evidence IMP] [PMID 10611222]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; Mtr3p 3335684 MTR3 30035099 MTR3 Sugiyamaella lignohabitans Mtr3p XP_018737961.1 3334866 R 796027 CDS AWJ20_3113 30035100 complement(3336096..3337397) B 1 NC_031674.1 Plasma membrane permease; mediates uptake of glycerophosphoinositol and glycerophosphocholine as sources of the nutrients inositol and phosphate; expression and transport rate are regulated by phosphate and inositol availability; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 16924500]; GO_component: GO:0005886 - plasma membrane [Evidence IMP] [PMID 9691030]; GO_function: GO:0015169 - glycerol-3-phosphate transmembrane transporter activity [Evidence IGI,IMP] [PMID 20133652]; GO_function: GO:0001406 - glycerophosphodiester transmembrane transporter activity [Evidence IDA] [PMID 16924500]; GO_function: GO:0001406 - glycerophosphodiester transmembrane transporter activity [Evidence IMP] [PMID 9691030]; GO_function: GO:0022857 - transmembrane transporter activity [Evidence IEA]; GO_function: GO:0005215 - transporter activity [Evidence IEA]; GO_process: GO:0015794 - glycerol-3-phosphate transport [Evidence IGI,IMP] [PMID 20133652]; GO_process: GO:0001407 - glycerophosphodiester transport [Evidence IDA] [PMID 16924500]; GO_process: GO:0001407 - glycerophosphodiester transport [Evidence IMP] [PMID 9691030]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IMP] [PMID 9691030]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; Git1p 3337397 GIT1 30035100 GIT1 Sugiyamaella lignohabitans Git1p XP_018737962.1 3336096 R 796027 CDS AWJ20_3114 30035101 complement(3339483..3340235) B 1 NC_031674.1 Peroxisomal 2,4-dienoyl-CoA reductase; auxiliary enzyme of fatty acid beta-oxidation; homodimeric enzyme required for growth and sporulation on petroselineate medium; expression induced during late sporulation and in the presence of oleate; GO_component: GO:0005782 - peroxisomal matrix [Evidence IDA] [PMID 9268358]; GO_component: GO:0005777 - peroxisome [Evidence IEA,IEA]; GO_function: GO:0008670 - 2,4-dienoyl-CoA reductase (NADPH) activity [Evidence IEA]; GO_function: GO:0008670 - 2,4-dienoyl-CoA reductase (NADPH) activity [Evidence IDA,ISS] [PMID 9268358]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_process: GO:0030437 - ascospore formation [Evidence IEP,IMP] [PMID 7969036]; GO_process: GO:0009062 - fatty acid catabolic process [Evidence IDA,ISS] [PMID 9268358]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; GO_process: GO:0030435 - sporulation resulting in formation of a cellular spore [Evidence IEA]; Sps19p 3340235 SPS19 30035101 SPS19 Sugiyamaella lignohabitans Sps19p XP_018737963.1 3339483 R 796027 CDS AWJ20_3115 30035102 complement(3341977..3343530) B 1 NC_031674.1 Glutathione synthetase; catalyzes the ATP-dependent synthesis of glutathione (GSH) from gamma-glutamylcysteine and glycine; induced by oxidative stress and heat shock; GO_component: GO:0005622 - intracellular [Evidence TAS] [PMID 12406228]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004363 - glutathione synthase activity [Evidence IEA,IEA]; GO_function: GO:0004363 - glutathione synthase activity [Evidence IDA] [PMID 9512666]; GO_function: GO:0016874 - ligase activity [Evidence IEA,IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006750 - glutathione biosynthetic process [Evidence IEA,IEA,IEA]; GO_process: GO:0006750 - glutathione biosynthetic process [Evidence IMP] [PMID 9512666]; glutathione synthase 3343530 GSH2 30035102 GSH2 Sugiyamaella lignohabitans glutathione synthase XP_018737964.1 3341977 R 796027 CDS AWJ20_3116 30035103 complement(3343851..3345338) B 1 NC_031674.1 Polyamine transporter of the major facilitator superfamily; member of the 12-spanner drug:H(+) antiporter DHA1 family; recognizes spermine, putrescine, and spermidine; catalyzes uptake of polyamines at alkaline pH and excretion at acidic pH; during oxidative stress exports spermine, spermidine from the cell, which controls timing of expression of stress-responsive genes; phosphorylation enhances activity and sorting to the plasma membrane; GO_component: GO:0033101 - cellular bud membrane [Evidence IDA] [PMID 13679573]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IMP] [PMID 11171066]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 12562762]; GO_component: GO:0005886 - plasma membrane [Evidence IDA,IMP] [PMID 15637075]; GO_function: GO:0015297 - antiporter activity [Evidence IEA]; GO_function: GO:0015606 - spermidine transmembrane transporter activity [Evidence IMP] [PMID 11171066]; GO_function: GO:0015606 - spermidine transmembrane transporter activity [Evidence IDA,IMP] [PMID 15637075]; GO_function: GO:0000297 - spermine transmembrane transporter activity [Evidence IMP] [PMID 11171066]; GO_function: GO:0000297 - spermine transmembrane transporter activity [Evidence IDA,IMP] [PMID 15637075]; GO_function: GO:0000297 - spermine transmembrane transporter activity [Evidence IMP] [PMID 9920864]; GO_process: GO:1902047 - polyamine transmembrane transport [Evidence IMP] [PMID 24136413]; GO_process: GO:0015847 - putrescine transport [Evidence IMP] [PMID 9920864]; GO_process: GO:0015848 - spermidine transport [Evidence IMP] [PMID 11171066]; GO_process: GO:0015848 - spermidine transport [Evidence IDA,IMP] [PMID 15637075]; GO_process: GO:0015848 - spermidine transport [Evidence IMP] [PMID 9920864]; GO_process: GO:0000296 - spermine transport [Evidence IMP] [PMID 11171066]; GO_process: GO:0000296 - spermine transport [Evidence IDA,IMP] [PMID 15637075]; GO_process: GO:0000296 - spermine transport [Evidence IMP] [PMID 9920864]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Tpo1p 3345338 TPO1 30035103 TPO1 Sugiyamaella lignohabitans Tpo1p XP_018737965.1 3343851 R 796027 CDS AWJ20_3117 30035104 complement(3346038..3346853) B 1 NC_031674.1 Plasma membrane transporter of the major facilitator superfamily; member of the 12-spanner drug:H(+) antiporter DHA1 family; involved in efflux of fluconazole, diazaborine, benomyl, methotrexate, and other drugs; expression induced in cells treated with the mycotoxin patulin; relocalizes from nucleus to plasma membrane upon DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 10903515]; GO_function: GO:0015238 - drug transmembrane transporter activity [Evidence IEA]; GO_function: GO:0015244 - fluconazole transporter activity [Evidence ISS] [PMID 9235926]; GO_process: GO:0006855 - drug transmembrane transport [Evidence IGI,IMP] [PMID 10572257]; GO_process: GO:0006855 - drug transmembrane transport [Evidence IGI] [PMID 9235926]; GO_process: GO:0015893 - drug transport [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence ISS] [PMID 9235926]; GO_process: GO:0006810 - transport [Evidence IEA]; Flr1p 3346853 FLR1 30035104 FLR1 Sugiyamaella lignohabitans Flr1p XP_018737966.1 3346038 R 796027 CDS AWJ20_3118 30035105 complement(3347006..3347827) B 1 NC_031674.1 Plasma membrane transporter of the major facilitator superfamily; member of the 12-spanner drug:H(+) antiporter DHA1 family; involved in efflux of fluconazole, diazaborine, benomyl, methotrexate, and other drugs; expression induced in cells treated with the mycotoxin patulin; relocalizes from nucleus to plasma membrane upon DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 10903515]; GO_function: GO:0015238 - drug transmembrane transporter activity [Evidence IEA]; GO_function: GO:0015244 - fluconazole transporter activity [Evidence ISS] [PMID 9235926]; GO_process: GO:0006855 - drug transmembrane transport [Evidence IGI,IMP] [PMID 10572257]; GO_process: GO:0006855 - drug transmembrane transport [Evidence IGI] [PMID 9235926]; GO_process: GO:0015893 - drug transport [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence ISS] [PMID 9235926]; GO_process: GO:0006810 - transport [Evidence IEA]; Flr1p 3347827 FLR1 30035105 FLR1 Sugiyamaella lignohabitans Flr1p XP_018737967.1 3347006 R 796027 CDS AWJ20_3119 30035106 complement(3349378..3350652) B 1 NC_031674.1 Protein required for rRNA maturation and ribosomal subunit biogenesis; required for 18S rRNA maturation; also required for small ribosomal subunit biogenesis; cosediments with pre-ribosomal particles; mutation decreases efficiency of +1 Ty1 frameshifting and transposition, and affects budding pattern; GO_component: GO:0030686 - 90S preribosome [Evidence IDA] [PMID 19806183]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11452010]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0030490 - maturation of SSU-rRNA [Evidence IMP] [PMID 20498295]; GO_process: GO:0042274 - ribosomal small subunit biogenesis [Evidence IMP] [PMID 19806183]; GO_process: GO:0042274 - ribosomal small subunit biogenesis [Evidence IMP] [PMID 20498295]; Bud22p 3350652 BUD22 30035106 BUD22 Sugiyamaella lignohabitans Bud22p XP_018737968.1 3349378 R 796027 CDS AWJ20_3120 30035108 complement(3351004..3351516) B 1 NC_031674.1 Mitochondrial ribosomal protein of the large subunit; protein abundance increases in response to DNA replication stress; GO_component: GO:0005762 - mitochondrial large ribosomal subunit [Evidence IDA] [PMID 9151978]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IDA] [PMID 9151978]; GO_process: GO:0032543 - mitochondrial translation [Evidence IC] [PMID 9151978]; mitochondrial 54S ribosomal protein YmL28 3351516 MRPL28 30035108 MRPL28 Sugiyamaella lignohabitans mitochondrial 54S ribosomal protein YmL28 XP_018737969.1 3351004 R 796027 CDS AWJ20_3121 30035109 3351911..3352774 B 1 NC_031674.1 uncharacterized protein 3352774 30035109 AWJ20_3121 Sugiyamaella lignohabitans uncharacterized protein XP_018737970.1 3351911 D 796027 CDS AWJ20_3122 30035110 complement(3354883..3355308) B 1 NC_031674.1 ssDNA-binding protein essential for mitochondrial genome maintenance; involved in mitochondrial DNA replication; GO_component: GO:0042645 - mitochondrial nucleoid [Evidence IDA] [PMID 10869431]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 1324172]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0003697 - single-stranded DNA binding [Evidence IEA]; GO_function: GO:0003697 - single-stranded DNA binding [Evidence IDA] [PMID 1324172]; GO_process: GO:0006260 - DNA replication [Evidence IEA,IEA]; GO_process: GO:0006264 - mitochondrial DNA replication [Evidence ISS] [PMID 1324172]; GO_process: GO:0000002 - mitochondrial genome maintenance [Evidence IMP] [PMID 1324172]; Rim1p 3355308 RIM1 30035110 RIM1 Sugiyamaella lignohabitans Rim1p XP_018737971.1 3354883 R 796027 CDS AWJ20_3123 30035111 3355897..3357357 B 1 NC_031674.1 prenylcysteine lyase, putative 3357357 30035111 AWJ20_3123 Sugiyamaella lignohabitans prenylcysteine lyase, putative XP_018737972.1 3355897 D 796027 CDS AWJ20_3124 30035112 3359355..3360776 B 1 NC_031674.1 Ammonium permease involved in regulation of pseudohyphal growth; belongs to a ubiquitous family of cytoplasmic membrane proteins that transport only ammonium (NH4+); expression is under the nitrogen catabolite repression regulation; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 11069679]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 24124599]; GO_function: GO:0008519 - ammonium transmembrane transporter activity [Evidence IEA]; GO_function: GO:0008519 - ammonium transmembrane transporter activity [Evidence IDA,IMP] [PMID 9234685]; GO_process: GO:0072488 - ammonium transmembrane transport [Evidence IEA]; GO_process: GO:0015696 - ammonium transport [Evidence IEA,IEA]; GO_process: GO:0015696 - ammonium transport [Evidence IMP] [PMID 9234685]; GO_process: GO:0019740 - nitrogen utilization [Evidence IMP] [PMID 9234685]; GO_process: GO:0007124 - pseudohyphal growth [Evidence IMP] [PMID 9482721]; GO_process: GO:0006810 - transport [Evidence IEA]; ammonium permease MEP2 3360776 MEP2 30035112 MEP2 Sugiyamaella lignohabitans ammonium permease MEP2 XP_018737973.1 3359355 D 796027 CDS AWJ20_3125 30035113 complement(3361010..3361819) B 1 NC_031674.1 One of several homologs of bacterial chaperone DnaJ; located in the ER lumen where it cooperates with Kar2p to mediate maturation of proteins; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005788 - endoplasmic reticulum lumen [Evidence IEA]; GO_component: GO:0005788 - endoplasmic reticulum lumen [Evidence IDA] [PMID 7744969]; GO_function: GO:0051087 - chaperone binding [Evidence IMP,ISS] [PMID 9817751]; GO_function: GO:0031072 - heat shock protein binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0051082 - unfolded protein binding [Evidence IEA]; GO_process: GO:0030433 - ER-associated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 11381090]; GO_process: GO:0006457 - protein folding [Evidence IEA]; GO_process: GO:0034975 - protein folding in endoplasmic reticulum [Evidence IMP] [PMID 9817751]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006986 - response to unfolded protein [Evidence IMP] [PMID 9817751]; GO_process: GO:0006810 - transport [Evidence IEA]; Scj1p 3361819 SCJ1 30035113 SCJ1 Sugiyamaella lignohabitans Scj1p XP_018737974.1 3361010 R 796027 CDS AWJ20_3126 30035114 complement(3362575..3363063) B 1 NC_031674.1 N-acetyltransferase (predicted) 3363063 30035114 AWJ20_3126 Sugiyamaella lignohabitans N-acetyltransferase (predicted) XP_018737975.1 3362575 R 796027 CDS AWJ20_3127 30035115 complement(3363239..3364786) B 1 NC_031674.1 Essential component of the TIM23 complex; acts as receptor for the translocase of the inner mitochondrial membrane (TIM23) complex guiding incoming precursors from the TOM complex; may control the gating of the Tim23p-Tim17p channel; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA,IEA]; GO_component: GO:0005744 - mitochondrial inner membrane presequence translocase complex [Evidence IEA]; GO_component: GO:0005744 - mitochondrial inner membrane presequence translocase complex [Evidence IDA] [PMID 12437924]; GO_component: GO:0005744 - mitochondrial inner membrane presequence translocase complex [Evidence IDA] [PMID 12437925]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0030943 - mitochondrion targeting sequence binding [Evidence IDA] [PMID 18418384]; GO_function: GO:0030943 - mitochondrion targeting sequence binding [Evidence IDA] [PMID 19144822]; GO_function: GO:0015266 - protein channel activity [Evidence IMP] [PMID 16763150]; GO_process: GO:0030150 - protein import into mitochondrial matrix [Evidence IMP] [PMID 12437924]; GO_process: GO:0030150 - protein import into mitochondrial matrix [Evidence IMP] [PMID 12437925]; GO_process: GO:0015031 - protein transport [Evidence IEA,IEA]; GO_process: GO:0046902 - regulation of mitochondrial membrane permeability [Evidence IDA] [PMID 16763150]; GO_process: GO:0006810 - transport [Evidence IEA]; Tim50p 3364786 TIM50 30035115 TIM50 Sugiyamaella lignohabitans Tim50p XP_018737976.1 3363239 R 796027 CDS AWJ20_3128 30035116 3366192..3368636 B 1 NC_031674.1 Putative ATPase of the AAA family; interacts with the Sin1p transcriptional repressor in the two-hybrid system; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016887 - ATPase activity [Evidence ISS] [PMID 8654588]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; putative AAA family ATPase SAP1 3368636 SAP1 30035116 SAP1 Sugiyamaella lignohabitans putative AAA family ATPase SAP1 XP_018737977.1 3366192 D 796027 CDS AWJ20_3129 30035117 3368875..3370584 B 1 NC_031674.1 Poly(rA)-binding protein; involved in translation termination efficiency, mRNA poly(A) tail length and mRNA stability; interacts with Sup45p (eRF1), Sup35p (eRF3) and Pab1p; similar to human prolyl 4-hydroxylase OGFOD1; binds Fe(III) and 2-oxoglutarate; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0031418 - L-ascorbic acid binding [Evidence IEA,IEA]; GO_function: GO:0051213 - dioxygenase activity [Evidence IEA]; GO_function: GO:0005506 - iron ion binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [Evidence IEA]; GO_function: GO:0016706 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors [Evidence IEA]; GO_function: GO:0008143 - poly(A) binding [Evidence IDA] [PMID 20040577]; GO_process: GO:0000288 - nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay [Evidence IMP] [PMID 16809762]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0006415 - translational termination [Evidence IMP] [PMID 16809762]; GO_process: GO:0006415 - translational termination [Evidence IMP] [PMID 20630870]; Tpa1p 3370584 TPA1 30035117 TPA1 Sugiyamaella lignohabitans Tpa1p XP_018737978.1 3368875 D 796027 CDS AWJ20_3130 30035119 complement(3370697..3371467) B 1 NC_031674.1 hybrid alkaline phosphatase 3371467 30035119 AWJ20_3130 Sugiyamaella lignohabitans hybrid alkaline phosphatase XP_018737979.1 3370697 R 796027 CDS AWJ20_3131 30035120 complement(3372599..3373525) B 1 NC_031674.1 BAR domain-containing protein that localizes to Golgi vesicles; the Golgi vesicles it localizes to are both early and late; required for adaptation to varying nutrient concentrations, fluid-phase endocytosis, polarization of the actin cytoskeleton, and vacuole biogenesis; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0030173 - integral component of Golgi membrane [Evidence IDA] [PMID 16107716]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006897 - endocytosis [Evidence IMP] [PMID 18156177]; GO_process: GO:0030950 - establishment or maintenance of actin cytoskeleton polarity [Evidence IMP] [PMID 18156177]; GO_process: GO:0007033 - vacuole organization [Evidence IMP] [PMID 18156177]; Gvp36p 3373525 GVP36 30035120 GVP36 Sugiyamaella lignohabitans Gvp36p XP_018737980.1 3372599 R 796027 CDS AWJ20_3132 30035121 3374775..3377348 B 1 NC_031674.1 Enzyme regulator; involved in synthesis of phosphatidylinositol 3,5-bisphosphate, in control of trafficking of some proteins to the vacuole lumen via the MVB, and in maintenance of vacuole size and acidity; binds negative (Fig4p) and positive (Fab1p) regulators of PtdIns(3,5)P(2) to control endolysosome function; GO_component: GO:0070772 - PAS complex [Evidence IDA,IPI] [PMID 19037259]; GO_component: GO:0000306 - extrinsic component of vacuolar membrane [Evidence IDA] [PMID 11889142]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 11889142]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 14528018]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 23708375]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0030674 - protein binding, bridging [Evidence IDA,IMP] [PMID 19037259]; GO_process: GO:0006661 - phosphatidylinositol biosynthetic process [Evidence IGI,IMP] [PMID 11889142]; GO_process: GO:0033674 - positive regulation of kinase activity [Evidence IGI,IMP] [PMID 11889142]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Vac14p 3377348 VAC14 30035121 VAC14 Sugiyamaella lignohabitans Vac14p XP_018737981.1 3374775 D 796027 CDS AWJ20_3133 30035122 3378654..3380087 B 1 NC_031674.1 Component of nuclear aminoacylation-dependent tRNA export pathway; cytoplasmic; interacts with nuclear pore component Nup116p; copurifies with tRNA export receptors Los1p and Msn5p, as well as eIF-1a; required for activation of RAN GTPase Gsp1p and dissociation of receptor-tRNA-Gsp1p export complex; recruits Rna1p from cytoplasm to NPC, facilitates Rna1p activation of Gsp1p GTPase activity by enabling Rna1p to gain access to Gsp1p-GTP bound to export receptor tRNA complex; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 17203074]; GO_component: GO:0005643 - nuclear pore [Evidence IDA,IPI] [PMID 17203074]; GO_function: GO:0000049 - tRNA binding [Evidence IDA] [PMID 17203074]; GO_process: GO:0006409 - tRNA export from nucleus [Evidence IGI,IMP,IPI] [PMID 17203074]; GO_process: GO:0006409 - tRNA export from nucleus [Evidence IGI] [PMID 22008473]; Cex1p 3380087 CEX1 30035122 CEX1 Sugiyamaella lignohabitans Cex1p XP_018737982.1 3378654 D 796027 CDS AWJ20_3134 30035123 complement(3381276..3382622) B 1 NC_031674.1 ATP-dependent RNA helicase of the DEAD-box protein family; has a strong preference for dsRNA; interacts with YRA1; required for the assembly of Yra1p, Nab2p and Mex67p onto mRNA and formation of nuclear mRNP; involved in mRNA decay and rRNA processing; may be involved in suppression of transcription from cryptic initiation sites; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22679025]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004004 - ATP-dependent RNA helicase activity [Evidence IDA] [PMID 23721653]; GO_function: GO:0008026 - ATP-dependent helicase activity [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0008186 - RNA-dependent ATPase activity [Evidence IDA,IMP] [PMID 22679025]; GO_function: GO:0004386 - helicase activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:1990120 - messenger ribonucleoprotein complex assembly [Evidence IMP] [PMID 23721653]; GO_process: GO:0071042 - nuclear polyadenylation-dependent mRNA catabolic process [Evidence IGI,IMP] [PMID 22679025]; GO_process: GO:0000184 - nuclear-transcribed mRNA catabolic process, nonsense-mediated decay [Evidence IEA]; GO_process: GO:0000184 - nuclear-transcribed mRNA catabolic process, nonsense-mediated decay [Evidence IPI] [PMID 7883168]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0006364 - rRNA processing [Evidence IMP] [PMID 11585918]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; DEAD-box ATP-dependent RNA helicase DBP2 3382622 DBP2 30035123 DBP2 Sugiyamaella lignohabitans DEAD-box ATP-dependent RNA helicase DBP2 XP_018737983.1 3381276 R 796027 CDS AWJ20_3135 30035124 3387423..3388325 B 1 NC_031674.1 amino acid starvation-responsive transcription factor GCN4 3388325 GCN4 30035124 GCN4 Sugiyamaella lignohabitans amino acid starvation-responsive transcription factor GCN4 XP_018737984.1 3387423 D 796027 CDS AWJ20_3136 30035125 complement(3388637..3390514) B 1 NC_031674.1 uncharacterized protein 3390514 30035125 AWJ20_3136 Sugiyamaella lignohabitans uncharacterized protein XP_018737985.1 3388637 R 796027 CDS AWJ20_3137 30035126 complement(3391250..3391531) B 1 NC_031674.1 Cytochrome b5; involved in the sterol and lipid biosynthesis pathways; acts as an electron donor to support sterol C5-6 desaturation; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IDA] [PMID 12514182]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0043231 - intracellular membrane-bounded organelle [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0031090 - organelle membrane [Evidence IEA]; GO_function: GO:0009055 - electron carrier activity [Evidence IDA] [PMID 10622712]; GO_function: GO:0020037 - heme binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; GO_process: GO:0016126 - sterol biosynthetic process [Evidence IDA] [PMID 10622712]; Cyb5p 3391531 CYB5 30035126 CYB5 Sugiyamaella lignohabitans Cyb5p XP_018737986.1 3391250 R 796027 CDS AWJ20_3138 30035127 3394792..3395835 B 1 NC_031674.1 Alpha' catalytic subunit of casein kinase 2 (CK2); CK2 is a Ser/Thr protein kinase with roles in cell growth and proliferation; CK2, comprised of CKA1, CKA2, CKB1 and CKB2, has many substrates including transcription factors and all RNA polymerases; protein abundance increases in response to DNA replication stress; regulates Fkh1p-mediated donor preference during mating-type switching; GO_component: GO:0034456 - UTP-C complex [Evidence IDA] [PMID 17515605]; GO_component: GO:0005956 - protein kinase CK2 complex [Evidence IDA] [PMID 8135547]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0004672 - protein kinase activity [Evidence IEA]; GO_function: GO:0004674 - protein serine/threonine kinase activity [Evidence IEA,IEA]; GO_function: GO:0004674 - protein serine/threonine kinase activity [Evidence IDA] [PMID 8226802]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016772 - transferase activity, transferring phosphorus-containing groups [Evidence IEA]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IDA] [PMID 11551505]; GO_process: GO:0001300 - chronological cell aging [Evidence IMP] [PMID 20657825]; GO_process: GO:0007535 - donor selection [Evidence IGI] [PMID 22496671]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; GO_process: GO:0006468 - protein phosphorylation [Evidence IEA]; GO_process: GO:0006468 - protein phosphorylation [Evidence IDA] [PMID 16952051]; GO_process: GO:0006356 - regulation of transcription from RNA polymerase I promoter [Evidence IDA] [PMID 11551505]; GO_process: GO:0006359 - regulation of transcription from RNA polymerase III promoter [Evidence IDA] [PMID 11551505]; casein kinase 2 catalytic subunit CKA2 3395835 CKA2 30035127 CKA2 Sugiyamaella lignohabitans casein kinase 2 catalytic subunit CKA2 XP_018737987.1 3394792 D 796027 CDS AWJ20_3139 30035128 complement(3396183..3401024) B 1 NC_031674.1 Adenylate cyclase; required for cAMP production and cAMP-dependent protein kinase signaling; the cAMP pathway controls a variety of cellular processes, including metabolism, cell cycle, stress response, stationary phase, and sporulation; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IDA] [PMID 22575457]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 22575457]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 2196438]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0004016 - adenylate cyclase activity [Evidence IEA,IEA]; GO_function: GO:0004016 - adenylate cyclase activity [Evidence IDA] [PMID 2934138]; GO_function: GO:0004016 - adenylate cyclase activity [Evidence IMP] [PMID 6360999]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016829 - lyase activity [Evidence IEA]; GO_function: GO:0000287 - magnesium ion binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016849 - phosphorus-oxygen lyase activity [Evidence IEA]; GO_process: GO:0007265 - Ras protein signal transduction [Evidence IGI] [PMID 2934138]; GO_process: GO:0007188 - adenylate cyclase-modulating G-protein coupled receptor signaling pathway [Evidence IGI] [PMID 2934138]; GO_process: GO:0006171 - cAMP biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0009190 - cyclic nucleotide biosynthetic process [Evidence IEA]; GO_process: GO:0035556 - intracellular signal transduction [Evidence IEA]; GO_process: GO:0007165 - signal transduction [Evidence IEA]; adenylate cyclase 3401024 CYR1 30035128 CYR1 Sugiyamaella lignohabitans adenylate cyclase XP_018737988.1 3396183 R 796027 CDS AWJ20_3140 30035130 3407965..3408936 B 1 NC_031674.1 Aldose reductase; involved in methylglyoxal, d-xylose, arabinose, and galactose metabolism; stress induced (osmotic, ionic, oxidative, heat shock, starvation and heavy metals); regulated by the HOG pathway; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0032866 - D-xylose:NADP reductase activity [Evidence IDA,IMP] [PMID 11481678]; GO_function: GO:0004032 - alditol:NADP+ 1-oxidoreductase activity [Evidence IEA]; GO_function: GO:0004032 - alditol:NADP+ 1-oxidoreductase activity [Evidence IDA,ISS] [PMID 11306085]; GO_function: GO:0004032 - alditol:NADP+ 1-oxidoreductase activity [Evidence IDA] [PMID 11525399]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 21124907]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_process: GO:0042843 - D-xylose catabolic process [Evidence IDA,IMP] [PMID 12271459]; GO_process: GO:0019568 - arabinose catabolic process [Evidence IDA,IMP] [PMID 12271459]; GO_process: GO:0071470 - cellular response to osmotic stress [Evidence IDA] [PMID 11525399]; GO_process: GO:0034599 - cellular response to oxidative stress [Evidence IGI] [PMID 17919749]; GO_process: GO:0019388 - galactose catabolic process [Evidence IGI] [PMID 18811659]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0006950 - response to stress [Evidence IEA]; trifunctional aldehyde reductase/xylose reductase/glucose 1-dehydrogenase (NADP(+)) 3408936 GRE3 30035130 GRE3 Sugiyamaella lignohabitans trifunctional aldehyde reductase/xylose reductase/glucose 1-dehydrogenase (NADP(+)) XP_018737989.1 3407965 D 796027 CDS AWJ20_3141 30035131 3409312..3410178 B 1 NC_031674.1 Nit protein; one of two proteins in S. cerevisiae with similarity to the Nit domain of NitFhit from fly and worm and to the mouse and human Nit protein which interacts with the Fhit tumor suppressor; nitrilase superfamily member; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016810 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds [Evidence IEA]; GO_function: GO:0016810 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds [Evidence ISS] [PMID 11380987]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0006807 - nitrogen compound metabolic process [Evidence IEA]; Nit3p 3410178 NIT3 30035131 NIT3 Sugiyamaella lignohabitans Nit3p XP_018737990.1 3409312 D 796027 CDS AWJ20_3142 30035132 3412537..3413643 B 1 NC_031674.1 gamma-tubulin 3413643 TUB4 30035132 TUB4 Sugiyamaella lignohabitans gamma-tubulin XP_018737991.1 3412537 D 796027 CDS AWJ20_3143 30035133 join(3417680..3417713,3417898..3418835) B 1 NC_031674.1 Methylthioadenosine phosphorylase (MTAP); catalyzes the initial step in the methionine salvage pathway; affects polyamine biosynthesis through regulation of ornithine decarboxylase (Spe1p) activity; regulates ADH2 gene expression; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 8807288]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_function: GO:0017061 - S-methyl-5-thioadenosine phosphorylase activity [Evidence IEA,IEA,IEA]; GO_function: GO:0017061 - S-methyl-5-thioadenosine phosphorylase activity [Evidence IDA,IMP] [PMID 14506228]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 21124907]; GO_function: GO:0004645 - phosphorylase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA]; GO_function: GO:0016763 - transferase activity, transferring pentosyl groups [Evidence IEA]; GO_process: GO:0019509 - L-methionine salvage from methylthioadenosine [Evidence IEA,IEA]; GO_process: GO:0019509 - L-methionine salvage from methylthioadenosine [Evidence IDA,IMP] [PMID 14506228]; GO_process: GO:0019509 - L-methionine salvage from methylthioadenosine [Evidence IMP] [PMID 18625006]; GO_process: GO:0006537 - glutamate biosynthetic process [Evidence IMP] [PMID 8807288]; GO_process: GO:0009116 - nucleoside metabolic process [Evidence IEA]; GO_process: GO:0006166 - purine ribonucleoside salvage [Evidence IEA]; S-methyl-5-thioadenosine phosphorylase 3418835 MEU1 30035133 MEU1 Sugiyamaella lignohabitans S-methyl-5-thioadenosine phosphorylase XP_018737992.1 3417680 D 796027 CDS AWJ20_3144 30035134 complement(3419095..3420333) B 1 NC_031674.1 uncharacterized protein 3420333 30035134 AWJ20_3144 Sugiyamaella lignohabitans uncharacterized protein XP_018737993.1 3419095 R 796027 CDS AWJ20_3145 30035135 3421218..3422738 B 1 NC_031674.1 Mitochondrial external NADH dehydrogenase; catalyzes the oxidation of cytosolic NADH; Nde1p and Nde2p are involved in providing the cytosolic NADH to the mitochondrial respiratory chain; NDE2 has a paralog, NDE1, that arose from the whole genome duplication; GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 11502169]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IMP,ISS] [PMID 9733747]; GO_function: GO:0003954 - NADH dehydrogenase activity [Evidence ISS] [PMID 9696750]; GO_function: GO:0003954 - NADH dehydrogenase activity [Evidence ISS] [PMID 9733747]; GO_function: GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_process: GO:0006116 - NADH oxidation [Evidence IDA] [PMID 12032156]; GO_process: GO:0019655 - glucose catabolic process to ethanol [Evidence IGI,IMP,ISS] [PMID 9733747]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; NADH-ubiquinone reductase (H(+)-translocating) NDE2 3422738 NDE2 30035135 NDE2 Sugiyamaella lignohabitans NADH-ubiquinone reductase (H(+)-translocating) NDE2 XP_018737994.1 3421218 D 796027 CDS AWJ20_3146 30035136 3423051..3423935 B 1 NC_031674.1 Microsomal cytochrome b reductase; not essential for viability; also detected in mitochondria; mutation in conserved NADH binding domain of the human ortholog results in type I methemoglobinemia; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IEA,IEA]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IDA] [PMID 16407407]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0004128 - cytochrome-b5 reductase activity, acting on NAD(P)H [Evidence IEA]; GO_function: GO:0004128 - cytochrome-b5 reductase activity, acting on NAD(P)H [Evidence IDA] [PMID 14930]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; Cbr1p 3423935 CBR1 30035136 CBR1 Sugiyamaella lignohabitans Cbr1p XP_018737995.1 3423051 D 796027 CDS AWJ20_3147 30035137 complement(3424150..3425658) B 1 NC_031674.1 Aspartate kinase (L-aspartate 4-P-transferase); cytoplasmic enzyme that catalyzes the first step in the common pathway for methionine and threonine biosynthesis; expression regulated by Gcn4p and the general control of amino acid synthesis; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0016597 - amino acid binding [Evidence IEA]; GO_function: GO:0004072 - aspartate kinase activity [Evidence IEA,IEA]; GO_function: GO:0004072 - aspartate kinase activity [Evidence IDA,IMP] [PMID 18626862]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0009090 - homoserine biosynthetic process [Evidence IMP] [PMID 4380684]; GO_process: GO:0009089 - lysine biosynthetic process via diaminopimelate [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0009086 - methionine biosynthetic process [Evidence IMP] [PMID 4380684]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; GO_process: GO:0009088 - threonine biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0009088 - threonine biosynthetic process [Evidence IDA,IMP] [PMID 18626862]; GO_process: GO:0009088 - threonine biosynthetic process [Evidence IMP] [PMID 4380684]; aspartate kinase 3425658 HOM3 30035137 HOM3 Sugiyamaella lignohabitans aspartate kinase XP_018737996.1 3424150 R 796027 CDS AWJ20_3148 30035138 join(3426609..3426687,3427294..3428825) B 1 NC_031674.1 Plasma membrane phosphatase involved in the general stress response; required with Psr1p and Whi2p for full activation of STRE-mediated gene expression, possibly through dephosphorylation of Msn2p; PSR2 has a paralog, PSR1, that arose from the whole genome duplication; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence ISS] [PMID 10777497]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016791 - phosphatase activity [Evidence IEA]; GO_function: GO:0004721 - phosphoprotein phosphatase activity [Evidence IEA]; GO_function: GO:0004721 - phosphoprotein phosphatase activity [Evidence ISA] [PMID 10777497]; GO_process: GO:0071472 - cellular response to salt stress [Evidence IGI] [PMID 10777497]; GO_process: GO:0016311 - dephosphorylation [Evidence IEA,IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; Psr2p 3428825 PSR2 30035138 PSR2 Sugiyamaella lignohabitans Psr2p XP_018737997.1 3426609 D 796027 CDS AWJ20_3149 30035139 complement(3429189..3430370) B 1 NC_031674.1 Protein required for biogenesis of 40S (small) ribosomal subunit; has similarity to the beta subunit of trimeric G-proteins and the splicing factor Prp4p; essential gene; GO_component: GO:0030686 - 90S preribosome [Evidence IDA] [PMID 12150911]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 15367670]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 8508778]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0032040 - small-subunit processome [Evidence IDA] [PMID 12068309]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_process: GO:0000462 - maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 8508778]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; Sof1p 3430370 SOF1 30035139 SOF1 Sugiyamaella lignohabitans Sof1p XP_018737998.1 3429189 R 796027 CDS AWJ20_3150 30035141 complement(3433694..3436090) B 1 NC_031674.1 Putative K+/H+ antiporter; has a probable role in intracellular cation homeostasis; localized to Golgi vesicles and detected in highly purified mitochondria in high-throughput studies; GO_component: GO:0005794 - Golgi apparatus [Evidence IDA] [PMID 15926887]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 17176761]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0015297 - antiporter activity [Evidence IEA]; GO_function: GO:0008324 - cation transmembrane transporter activity [Evidence IEA]; GO_function: GO:0015386 - potassium:proton antiporter activity [Evidence IMP,ISS] [PMID 9811642]; GO_function: GO:0015299 - solute:proton antiporter activity [Evidence IEA]; GO_process: GO:0006812 - cation transport [Evidence IEA]; GO_process: GO:1902600 - hydrogen ion transmembrane transport [Evidence IEA]; GO_process: GO:0006811 - ion transport [Evidence IEA]; GO_process: GO:0015672 - monovalent inorganic cation transport [Evidence IMP,ISS] [PMID 9811642]; GO_process: GO:0006813 - potassium ion transport [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Kha1p 3436090 KHA1 30035141 KHA1 Sugiyamaella lignohabitans Kha1p XP_018737999.1 3433694 R 796027 CDS AWJ20_3151 30035142 3438057..3439733 B 1 NC_031674.1 uncharacterized protein 3439733 30035142 AWJ20_3151 Sugiyamaella lignohabitans uncharacterized protein XP_018738000.1 3438057 D 796027 CDS AWJ20_3152 30035143 complement(3439768..3440610) B 1 NC_031674.1 uncharacterized protein 3440610 30035143 AWJ20_3152 Sugiyamaella lignohabitans uncharacterized protein XP_018738001.1 3439768 R 796027 CDS AWJ20_3153 30035144 3441609..3443024 B 1 NC_031674.1 Essential nuclear envelope integral membrane protein; required for nuclear envelope morphology, nuclear pore complex localization, nuclear export; exhibits synthetic lethal genetic interactions with genes involved in lipid metabolism; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005635 - nuclear envelope [Evidence IDA] [PMID 11483521]; GO_component: GO:0031965 - nuclear membrane [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0044255 - cellular lipid metabolic process [Evidence IGI] [PMID 20016074]; GO_process: GO:0006406 - mRNA export from nucleus [Evidence IEA]; GO_process: GO:0006406 - mRNA export from nucleus [Evidence IMP] [PMID 11483521]; GO_process: GO:0051028 - mRNA transport [Evidence IEA]; GO_process: GO:0006998 - nuclear envelope organization [Evidence IEA]; GO_process: GO:0006611 - protein export from nucleus [Evidence IEA]; GO_process: GO:0006611 - protein export from nucleus [Evidence IMP] [PMID 11483521]; GO_process: GO:0006810 - transport [Evidence IEA]; Brr6p 3443024 BRR6 30035144 BRR6 Sugiyamaella lignohabitans Brr6p XP_018738002.1 3441609 D 796027 CDS AWJ20_3154 30035145 3443393..3445687 B 1 NC_031674.1 Mitotic spindle midzone-localized microtubule bundling protein; microtubule-associated protein (MAP) family member; required for spindle elongation and stabilization; undergoes cell cycle-regulated degradation by anaphase promoting complex; potential Cdc28p substrate; relative distribution to microtubules decreases upon DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA]; GO_component: GO:0005874 - microtubule [Evidence IEA]; GO_component: GO:0005874 - microtubule [Evidence IDA] [PMID 22842922]; GO_component: GO:0005880 - nuclear microtubule [Evidence IDA] [PMID 7559759]; GO_component: GO:0005819 - spindle [Evidence IEA]; GO_component: GO:0005819 - spindle [Evidence IDA] [PMID 7559759]; GO_component: GO:0051233 - spindle midzone [Evidence IDA] [PMID 7559759]; GO_function: GO:0008017 - microtubule binding [Evidence IEA]; GO_function: GO:0008017 - microtubule binding [Evidence IDA] [PMID 12591913]; GO_process: GO:0000910 - cytokinesis [Evidence IEA]; GO_process: GO:0007109 - cytokinesis, completion of separation [Evidence IMP] [PMID 16615892]; GO_process: GO:0001578 - microtubule bundle formation [Evidence IDA] [PMID 12591913]; GO_process: GO:0000226 - microtubule cytoskeleton organization [Evidence IEA]; GO_process: GO:0000022 - mitotic spindle elongation [Evidence IMP] [PMID 12591913]; GO_process: GO:0000022 - mitotic spindle elongation [Evidence IGI,IMP] [PMID 7559759]; GO_process: GO:0043148 - mitotic spindle stabilization [Evidence IMP] [PMID 9036857]; GO_process: GO:0051255 - spindle midzone assembly [Evidence IMP] [PMID 17562791]; GO_process: GO:0000073 - spindle pole body separation [Evidence IGI] [PMID 16688214]; Ase1p 3445687 ASE1 30035145 ASE1 Sugiyamaella lignohabitans Ase1p XP_018738003.1 3443393 D 796027 CDS AWJ20_3155 30035146 3447800..3448816 B 1 NC_031674.1 Aminodeoxychorismate lyase (4-amino-4-deoxychorismate lyase); catalyzes the third step in para-aminobenzoic acid biosynthesis; involved in folic acid biosynthesis; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0008696 - 4-amino-4-deoxychorismate lyase activity [Evidence IEA]; GO_function: GO:0008696 - 4-amino-4-deoxychorismate lyase activity [Evidence IDA] [PMID 17873082]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016829 - lyase activity [Evidence IEA]; GO_process: GO:0046656 - folic acid biosynthetic process [Evidence IEA]; GO_process: GO:0046656 - folic acid biosynthetic process [Evidence IMP] [PMID 17873082]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0046654 - tetrahydrofolate biosynthetic process [Evidence IEA]; aminodeoxychorismate lyase ABZ2 3448816 ABZ2 30035146 ABZ2 Sugiyamaella lignohabitans aminodeoxychorismate lyase ABZ2 XP_018738004.1 3447800 D 796027 CDS AWJ20_3156 30035147 complement(3449029..3449967) B 1 NC_031674.1 Phosphoserine phosphatase of the phosphoglycerate pathway; involved in serine and glycine biosynthesis, expression is regulated by the available nitrogen source; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0000287 - magnesium ion binding [Evidence IBA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016791 - phosphatase activity [Evidence IEA]; GO_function: GO:0004647 - phosphoserine phosphatase activity [Evidence IEA,IEA]; GO_function: GO:0004647 - phosphoserine phosphatase activity [Evidence IMP] [PMID 1326413]; GO_process: GO:0006564 - L-serine biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0006564 - L-serine biosynthetic process [Evidence IMP] [PMID 1326413]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0016311 - dephosphorylation [Evidence IEA,IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; phosphoserine phosphatase 3449967 SER2 30035147 SER2 Sugiyamaella lignohabitans phosphoserine phosphatase XP_018738005.1 3449029 R 796027 CDS AWJ20_3157 30035148 3450189..3451979 B 1 NC_031674.1 uncharacterized protein 3451979 30035148 AWJ20_3157 Sugiyamaella lignohabitans uncharacterized protein XP_018738006.1 3450189 D 796027 CDS AWJ20_3158 30035149 3452557..3454806 B 1 NC_031674.1 Component of RNA polymerase transcription factor TFIIH holoenzyme; has DNA-dependent ATPase/helicase activity and is required, with Rad3p, for unwinding promoter DNA; interacts functionally with TFIIB and has roles in transcription start site selection and in gene looping to juxtapose initiation and termination regions; involved in DNA repair; relocalizes to the cytosol in response to hypoxia; homolog of human ERCC3; GO_component: GO:0000439 - core TFIIH complex [Evidence IDA] [PMID 7961739]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 22932476]; GO_component: GO:0005675 - holo TFIIH complex [Evidence IDA] [PMID 19818408]; GO_component: GO:0000112 - nucleotide-excision repair factor 3 complex [Evidence IDA] [PMID 8855246]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22932476]; GO_component: GO:0097550 - transcriptional preinitiation complex [Evidence IDA] [PMID 22751016]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004003 - ATP-dependent DNA helicase activity [Evidence IEA]; GO_function: GO:0004003 - ATP-dependent DNA helicase activity [Evidence IDA] [PMID 8202161]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0000990 - core RNA polymerase binding transcription factor activity [Evidence IC] [PMID 19818408]; GO_function: GO:0004386 - helicase activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA,IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0032508 - DNA duplex unwinding [Evidence IDA] [PMID 22751016]; GO_process: GO:0006281 - DNA repair [Evidence IEA]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0006289 - nucleotide-excision repair [Evidence IEA]; GO_process: GO:0033683 - nucleotide-excision repair, DNA incision [Evidence IDA] [PMID 8631896]; GO_process: GO:0070816 - phosphorylation of RNA polymerase II C-terminal domain [Evidence IDA] [PMID 19450536]; GO_process: GO:0070816 - phosphorylation of RNA polymerase II C-terminal domain [Evidence IDA] [PMID 19679665]; GO_process: GO:0016973 - poly(A)+ mRNA export from nucleus [Evidence IMP] [PMID 17212653]; GO_process: GO:0001111 - promoter clearance from RNA polymerase II promoter [Evidence IMP] [PMID 10713451]; GO_process: GO:0000019 - regulation of mitotic recombination [Evidence IMP] [PMID 10713167]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0010525 - regulation of transposition, RNA-mediated [Evidence IMP] [PMID 10713167]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IDA] [PMID 19818408]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; GO_process: GO:0001113 - transcriptional open complex formation at RNA polymerase II promoter [Evidence IMP] [PMID 10409754]; TFIIH/NER complex ATPase/helicase subunit SSL2 3454806 SSL2 30035149 SSL2 Sugiyamaella lignohabitans TFIIH/NER complex ATPase/helicase subunit SSL2 XP_018738007.1 3452557 D 796027 CDS AWJ20_3159 30035150 complement(3456745..3457902) B 1 NC_031674.1 uncharacterized protein 3457902 30035150 AWJ20_3159 Sugiyamaella lignohabitans uncharacterized protein XP_018738008.1 3456745 R 796027 CDS AWJ20_3160 30035152 complement(3458195..3458863) B 1 NC_031674.1 Putative histone acetylase with a role in transcriptional silencing; sequence-specific activator of histone genes, binds specifically and cooperatively to pairs of UAS elements in core histone promoters, functions at or near the TATA box; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0008080 - N-acetyltransferase activity [Evidence IEA]; GO_function: GO:0004402 - histone acetyltransferase activity [Evidence ISS] [PMID 9175471]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 16199888]; GO_process: GO:0006281 - DNA repair [Evidence IMP] [PMID 17078097]; GO_process: GO:0000183 - chromatin silencing at rDNA [Evidence IMP] [PMID 21057056]; GO_process: GO:0030466 - chromatin silencing at silent mating-type cassette [Evidence IGI] [PMID 21057056]; GO_process: GO:0006348 - chromatin silencing at telomere [Evidence IMP] [PMID 21057056]; GO_process: GO:0016573 - histone acetylation [Evidence IMP] [PMID 12192040]; GO_process: GO:0000122 - negative regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 17526727]; Spt10p 3458863 SPT10 30035152 SPT10 Sugiyamaella lignohabitans Spt10p XP_018738009.1 3458195 R 796027 CDS AWJ20_3161 30035153 3459468..3459848 B 1 NC_031674.1 Nit protein; one of two proteins in S. cerevisiae with similarity to the Nit domain of NitFhit from fly and worm and to the mouse and human Nit protein which interacts with the Fhit tumor suppressor; nitrilase superfamily member; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016810 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds [Evidence IEA]; GO_function: GO:0016810 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds [Evidence ISS] [PMID 11380987]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0006807 - nitrogen compound metabolic process [Evidence IEA]; Nit2p 3459848 NIT2 30035153 NIT2 Sugiyamaella lignohabitans Nit2p XP_018738010.1 3459468 D 796027 CDS AWJ20_3162 30035154 3460070..3460420 B 1 NC_031674.1 Nit protein; one of two proteins in S. cerevisiae with similarity to the Nit domain of NitFhit from fly and worm and to the mouse and human Nit protein which interacts with the Fhit tumor suppressor; nitrilase superfamily member; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016810 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds [Evidence IEA]; GO_function: GO:0016810 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds [Evidence ISS] [PMID 11380987]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0006807 - nitrogen compound metabolic process [Evidence IEA]; Nit2p 3460420 NIT2 30035154 NIT2 Sugiyamaella lignohabitans Nit2p XP_018738011.1 3460070 D 796027 CDS AWJ20_3163 30035155 3461688..3462929 B 1 NC_031674.1 uncharacterized protein 3462929 30035155 AWJ20_3163 Sugiyamaella lignohabitans uncharacterized protein XP_018738012.1 3461688 D 796027 CDS AWJ20_3164 30035156 3463088..3468796 B 1 NC_031674.1 1-phosphatidylinositol-3-phosphate 5-kinase; vacuolar membrane kinase that generates phosphatidylinositol (3,5)P2, which is involved in vacuolar sorting and homeostasis; GO_component: GO:0070772 - PAS complex [Evidence IDA,IPI] [PMID 19037259]; GO_component: GO:0005768 - endosome [Evidence IEA]; GO_component: GO:0010008 - endosome membrane [Evidence IEA]; GO_component: GO:0010008 - endosome membrane [Evidence IDA] [PMID 11889142]; GO_component: GO:0010008 - endosome membrane [Evidence IDA] [PMID 9763421]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 11889142]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 9763421]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0000285 - 1-phosphatidylinositol-3-phosphate 5-kinase activity [Evidence IEA]; GO_function: GO:0000285 - 1-phosphatidylinositol-3-phosphate 5-kinase activity [Evidence IMP] [PMID 9763421]; GO_function: GO:0000285 - 1-phosphatidylinositol-3-phosphate 5-kinase activity [Evidence IDA,IMP] [PMID 9811604]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA,IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016307 - phosphatidylinositol phosphate kinase activity [Evidence IEA]; GO_function: GO:0032266 - phosphatidylinositol-3-phosphate binding [Evidence IDA] [PMID 9702203]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0044267 - cellular protein metabolic process [Evidence IEA]; GO_process: GO:0046488 - phosphatidylinositol metabolic process [Evidence IEA]; GO_process: GO:0046854 - phosphatidylinositol phosphorylation [Evidence IMP] [PMID 9763421]; GO_process: GO:0046854 - phosphatidylinositol phosphorylation [Evidence IDA,IMP] [PMID 9811604]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; 1-phosphatidylinositol-3-phosphate 5-kinase 3468796 FAB1 30035156 FAB1 Sugiyamaella lignohabitans 1-phosphatidylinositol-3-phosphate 5-kinase XP_018738013.1 3463088 D 796027 CDS AWJ20_3165 30035157 complement(3469230..3470612) B 1 NC_031674.1 Mitochondrial tyrosyl-tRNA synthetase; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IMP] [PMID 3315228]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0004812 - aminoacyl-tRNA ligase activity [Evidence IEA,IEA]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_function: GO:0004831 - tyrosine-tRNA ligase activity [Evidence IEA,IEA]; GO_function: GO:0004831 - tyrosine-tRNA ligase activity [Evidence IGI,ISS] [PMID 3315228]; GO_process: GO:0070184 - mitochondrial tyrosyl-tRNA aminoacylation [Evidence IGI,ISS] [PMID 3315228]; GO_process: GO:0006418 - tRNA aminoacylation for protein translation [Evidence IEA]; GO_process: GO:0006412 - translation [Evidence IEA]; GO_process: GO:0006437 - tyrosyl-tRNA aminoacylation [Evidence IEA]; tyrosine--tRNA ligase MSY1 3470612 MSY1 30035157 MSY1 Sugiyamaella lignohabitans tyrosine--tRNA ligase MSY1 XP_018738014.1 3469230 R 796027 CDS AWJ20_3166 30035158 3471097..3473481 B 1 NC_031674.1 uncharacterized protein 3473481 30035158 AWJ20_3166 Sugiyamaella lignohabitans uncharacterized protein XP_018738015.1 3471097 D 796027 CDS AWJ20_3167 30035159 complement(3473573..3474217) B 1 NC_031674.1 Gamma-glutamyl cyclotransferase; cleaves the gamma-glutamyl bond of glutathione to yield 5-oxoproline and a Cys-Gly dipeptide; similar to mammalian pro-apoptotic protein ChaC1; expression of mouse ChaC1 in yeast increases apoptosis; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm and nucleus; periodically expressed during the metabolic cycle; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003839 - gamma-glutamylcyclotransferase activity [Evidence IDA,IMP] [PMID 23070364]; GO_process: GO:0006751 - glutathione catabolic process [Evidence IDA,IMP] [PMID 23070364]; Gcg1p 3474217 GCG1 30035159 GCG1 Sugiyamaella lignohabitans Gcg1p XP_018738016.1 3473573 R 796027 CDS AWJ20_3168 30035160 3475009..3476568 B 1 NC_031674.1 Nuclear dsRNA-specific ribonuclease (RNase III); involved in rDNA transcription, rRNA processing and U2 snRNA 3' end formation by cleavage of a stem-loop structure at the 3' end of U2 snRNA; involved in polyadenylation-independent transcription termination; involved in the cell wall stress response, regulating the degradation of cell wall integrity and morphogenesis checkpoint genes; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 15090619]; GO_component: GO:0005654 - nucleoplasm [Evidence IDA] [PMID 15090619]; GO_function: GO:0003723 - RNA binding [Evidence IEA,IEA]; GO_function: GO:0004519 - endonuclease activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0004518 - nuclease activity [Evidence IEA]; GO_function: GO:0004525 - ribonuclease III activity [Evidence IEA,IEA]; GO_function: GO:0004525 - ribonuclease III activity [Evidence IDA] [PMID 15766245]; GO_process: GO:0090501 - RNA phosphodiester bond hydrolysis [Evidence IEA,IEA]; GO_process: GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic [Evidence IEA,IEA]; GO_process: GO:0006396 - RNA processing [Evidence IEA]; GO_process: GO:0034473 - U1 snRNA 3'-end processing [Evidence IMP] [PMID 10508172]; GO_process: GO:0034475 - U4 snRNA 3'-end processing [Evidence IMP] [PMID 10508172]; GO_process: GO:0034476 - U5 snRNA 3'-end processing [Evidence IMP] [PMID 10508172]; GO_process: GO:0034963 - box C/D snoRNA processing [Evidence IMP] [PMID 23201338]; GO_process: GO:0034964 - box H/ACA snoRNA processing [Evidence IMP] [PMID 23201338]; GO_process: GO:0006325 - chromatin organization [Evidence IMP] [PMID 17991894]; GO_process: GO:0006379 - mRNA cleavage [Evidence IDA,IMP] [PMID 17158880]; GO_process: GO:0016075 - rRNA catabolic process [Evidence IEA]; GO_process: GO:0006364 - rRNA processing [Evidence IMP] [PMID 17991894]; GO_process: GO:0009303 - rRNA transcription [Evidence IMP] [PMID 17991894]; GO_process: GO:0060237 - regulation of fungal-type cell wall organization [Evidence IGI,IMP] [PMID 22576366]; GO_process: GO:0030847 - termination of RNA polymerase II transcription, exosome-dependent [Evidence IDA,IMP,IPI] [PMID 19818713]; Rnt1p 3476568 RNT1 30035160 RNT1 Sugiyamaella lignohabitans Rnt1p XP_018738017.1 3475009 D 796027 CDS AWJ20_3169 30035161 complement(3476654..3476902) B 1 NC_031674.1 Nudix hydrolase family member with ADP-ribose pyrophosphatase activity; shown to metabolize O-acetyl-ADP-ribose to AMP and acetylated ribose 5'-phosphate; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 19251690]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0047631 - ADP-ribose diphosphatase activity [Evidence IEA]; GO_function: GO:0047631 - ADP-ribose diphosphatase activity [Evidence IDA] [PMID 10542272]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA,IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_process: GO:0019693 - ribose phosphate metabolic process [Evidence IDA] [PMID 10542272]; GO_process: GO:0019693 - ribose phosphate metabolic process [Evidence IDA] [PMID 12370179]; Ysa1p 3476902 YSA1 30035161 YSA1 Sugiyamaella lignohabitans Ysa1p XP_018738018.1 3476654 R 796027 CDS AWJ20_3170 30035163 3479484..3479732 B 1 NC_031674.1 uncharacterized protein 3479732 30035163 AWJ20_3170 Sugiyamaella lignohabitans uncharacterized protein XP_018738019.1 3479484 D 796027 CDS AWJ20_3171 30035164 complement(3479974..3481266) B 1 NC_031674.1 Putative aminopeptidase; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0004177 - aminopeptidase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0008233 - peptidase activity [Evidence IEA,IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0006508 - proteolysis [Evidence IEA,IEA]; putative aminopeptidase 3481266 30035164 AWJ20_3171 Sugiyamaella lignohabitans putative aminopeptidase XP_018738020.1 3479974 R 796027 CDS AWJ20_3172 30035165 3482231..3482833 B 1 NC_031674.1 Dihydrofolate reductase involved in tetrahydrofolate biosynthesis; required for respiratory metabolism; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005829 - cytosol [Evidence IC] [PMID 1427091]; GO_component: GO:0005829 - cytosol [Evidence IC] [PMID 2827121]; GO_component: GO:0005829 - cytosol [Evidence IC] [PMID 2838385]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_function: GO:0050661 - NADP binding [Evidence IEA]; GO_function: GO:0004146 - dihydrofolate reductase activity [Evidence IEA,IEA]; GO_function: GO:0004146 - dihydrofolate reductase activity [Evidence IMP] [PMID 1427091]; GO_function: GO:0004146 - dihydrofolate reductase activity [Evidence IMP] [PMID 2827121]; GO_function: GO:0004146 - dihydrofolate reductase activity [Evidence IDA] [PMID 2838385]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 21124907]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_process: GO:0046452 - dihydrofolate metabolic process [Evidence IMP] [PMID 1427091]; GO_process: GO:0006545 - glycine biosynthetic process [Evidence IEA]; GO_process: GO:0009165 - nucleotide biosynthetic process [Evidence IEA]; GO_process: GO:0006730 - one-carbon metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0046654 - tetrahydrofolate biosynthetic process [Evidence IEA]; GO_process: GO:0046654 - tetrahydrofolate biosynthetic process [Evidence IMP] [PMID 1427091]; dihydrofolate reductase 3482833 DFR1 30035165 DFR1 Sugiyamaella lignohabitans dihydrofolate reductase XP_018738021.1 3482231 D 796027 CDS AWJ20_3173 30035166 complement(3483246..3486671) B 1 NC_031674.1 tyrosine/serine/threonine protein phosphatase PPS1 3486671 PPS1 30035166 PPS1 Sugiyamaella lignohabitans tyrosine/serine/threonine protein phosphatase PPS1 XP_018738022.1 3483246 R 796027 CDS AWJ20_3174 30035167 complement(3488096..3489052) B 1 NC_031674.1 XP_001275318|NAD dependent epimerase/dehydratase family protein [Aspergillus clavatus NRRL 1]; NAD dependent epimerase/dehydratase family protein 3489052 30035167 AWJ20_3174 Sugiyamaella lignohabitans NAD dependent epimerase/dehydratase family protein XP_018738023.1 3488096 R 796027 CDS AWJ20_3175 30035168 complement(3490037..3490363) B 1 NC_031674.1 carbohydrate binding domain protein 3490363 30035168 AWJ20_3175 Sugiyamaella lignohabitans carbohydrate binding domain protein XP_018738024.1 3490037 R 796027 CDS AWJ20_3176 30035169 complement(join(3491077..3492003,3492234..3492293)) B 1 NC_031674.1 Cytochrome c heme lyase (holocytochrome c synthase); attaches heme to apo-cytochrome c (Cyc1p or Cyc7p) in the mitochondrial intermembrane space; human ortholog may have a role in microphthalmia with linear skin defects (MLS); GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IDA] [PMID 1656231]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0004408 - holocytochrome-c synthase activity [Evidence IEA,IEA]; GO_function: GO:0004408 - holocytochrome-c synthase activity [Evidence IDA] [PMID 3034577]; GO_function: GO:0016829 - lyase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_process: GO:0018063 - cytochrome c-heme linkage [Evidence IDA] [PMID 3034577]; holocytochrome c synthase CYC3 3492293 CYC3 30035169 CYC3 Sugiyamaella lignohabitans holocytochrome c synthase CYC3 XP_018738025.1 3491077 R 796027 CDS AWJ20_3177 30035170 3493522..3493986 B 1 NC_031674.1 decapping enzyme complex catalytic subunit DCP1 3493986 DCP2 30035170 DCP2 Sugiyamaella lignohabitans decapping enzyme complex catalytic subunit DCP1 XP_018738026.1 3493522 D 796027 CDS AWJ20_3178 30035171 3503386..3504825 B 1 NC_031674.1 cyclin CLN3 3504825 CLN3 30035171 CLN3 Sugiyamaella lignohabitans cyclin CLN3 XP_018738027.1 3503386 D 796027 CDS AWJ20_3179 30035172 3511381..3512208 B 1 NC_031674.1 uncharacterized protein 3512208 30035172 AWJ20_3179 Sugiyamaella lignohabitans uncharacterized protein XP_018738028.1 3511381 D 796027 CDS AWJ20_3180 30035174 complement(3513216..3514421) B 1 NC_031674.1 Protein involved in regulation of sterol biosynthesis; specifically stabilizes Hmg2p, one of two HMG-CoA isoenzymes that catalyze the rate-limiting step in sterol biosynthesis; homolog of mammalian INSIG proteins; NSG2 has a paralog, NSG1, that arose from the whole genome duplication; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 14562095]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0051082 - unfolded protein binding [Evidence IMP] [PMID 16270032]; GO_process: GO:0016126 - sterol biosynthetic process [Evidence IGI] [PMID 16270032]; Nsg2p 3514421 NSG2 30035174 NSG2 Sugiyamaella lignohabitans Nsg2p XP_018738029.1 3513216 R 796027 CDS AWJ20_3181 30035175 complement(3515367..3517406) B 1 NC_031674.1 uncharacterized protein 3517406 30035175 AWJ20_3181 Sugiyamaella lignohabitans uncharacterized protein XP_018738030.1 3515367 R 796027 CDS AWJ20_3182 30035176 complement(3518374..3521394) B 1 NC_031674.1 Subunit of the THO complex; THO is required for efficient transcription elongation and involved in transcriptional elongation-associated recombination; required for LacZ RNA expression from certain plasmids; GO_component: GO:0000445 - THO complex part of transcription export complex [Evidence IPI] [PMID 11979277]; GO_component: GO:0000446 - nucleoplasmic THO complex [Evidence IMP,IPI] [PMID 11060033]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11139493]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_function: GO:0003677 - DNA binding [Evidence IPI] [PMID 15343339]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_function: GO:0003676 - nucleic acid binding [Evidence IDA] [PMID 12093753]; GO_process: GO:0006310 - DNA recombination [Evidence IMP] [PMID 11060033]; GO_process: GO:0031124 - mRNA 3'-end processing [Evidence IMP] [PMID 18614048]; GO_process: GO:0006406 - mRNA export from nucleus [Evidence IMP] [PMID 11979277]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006368 - transcription elongation from RNA polymerase II promoter [Evidence IMP] [PMID 12093753]; GO_process: GO:0006368 - transcription elongation from RNA polymerase II promoter [Evidence IMP] [PMID 17960421]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006283 - transcription-coupled nucleotide-excision repair [Evidence IMP] [PMID 17537816]; Tho2p 3521394 THO2 30035176 THO2 Sugiyamaella lignohabitans Tho2p XP_018738031.1 3518374 R 796027 CDS AWJ20_3183 30035177 complement(3522048..3524381) B 1 NC_031674.1 Subunit of the THO complex; THO is required for efficient transcription elongation and involved in transcriptional elongation-associated recombination; required for LacZ RNA expression from certain plasmids; GO_component: GO:0000445 - THO complex part of transcription export complex [Evidence IPI] [PMID 11979277]; GO_component: GO:0000446 - nucleoplasmic THO complex [Evidence IMP,IPI] [PMID 11060033]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11139493]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_function: GO:0003677 - DNA binding [Evidence IPI] [PMID 15343339]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_function: GO:0003676 - nucleic acid binding [Evidence IDA] [PMID 12093753]; GO_process: GO:0006310 - DNA recombination [Evidence IMP] [PMID 11060033]; GO_process: GO:0031124 - mRNA 3'-end processing [Evidence IMP] [PMID 18614048]; GO_process: GO:0006406 - mRNA export from nucleus [Evidence IMP] [PMID 11979277]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006368 - transcription elongation from RNA polymerase II promoter [Evidence IMP] [PMID 12093753]; GO_process: GO:0006368 - transcription elongation from RNA polymerase II promoter [Evidence IMP] [PMID 17960421]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006283 - transcription-coupled nucleotide-excision repair [Evidence IMP] [PMID 17537816]; Tho2p 3524381 THO2 30035177 THO2 Sugiyamaella lignohabitans Tho2p XP_018738032.1 3522048 R 796027 CDS AWJ20_3184 30035178 complement(3525514..3526662) B 1 NC_031674.1 uncharacterized protein 3526662 30035178 AWJ20_3184 Sugiyamaella lignohabitans uncharacterized protein XP_018738033.1 3525514 R 796027 CDS AWJ20_3185 30035179 3528696..3532019 B 1 NC_031674.1 Protein that functions in the cell wall integrity pathway; functions upstream of Pkc1p; GFP-fusion protein expression is induced in response to the DNA-damaging agent MMS; non-tagged Ack1p is detected in purified mitochondria; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0031505 - fungal-type cell wall organization [Evidence IMP] [PMID 18806213]; GO_process: GO:0009967 - positive regulation of signal transduction [Evidence IMP] [PMID 18806213]; Ack1p 3532019 ACK1 30035179 ACK1 Sugiyamaella lignohabitans Ack1p XP_018738034.1 3528696 D 796027 CDS AWJ20_3186 30035180 complement(3533103..3535172) B 1 NC_031674.1 Transcriptional regulator of pseudohyphal growth; protein with sequence similarity to S. pombe gti1+ (gluconate transport inducer 1) and C. albicans Wor1; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; Mit1p 3535172 MIT1 30035180 MIT1 Sugiyamaella lignohabitans Mit1p XP_018738035.1 3533103 R 796027 CDS AWJ20_3187 30035181 3543436..3545394 B 1 NC_031674.1 uncharacterized protein 3545394 30035181 AWJ20_3187 Sugiyamaella lignohabitans uncharacterized protein XP_018738036.1 3543436 D 796027 CDS AWJ20_3188 30035182 3548269..3550014 B 1 NC_031674.1 serine/threonine protein kinase SAT4 3550014 SAT4 30035182 SAT4 Sugiyamaella lignohabitans serine/threonine protein kinase SAT4 XP_018738037.1 3548269 D 796027 CDS AWJ20_3189 30035183 complement(3550561..3552222) B 1 NC_031674.1 cAMP-dependent protein kinase catalytic subunit; promotes vegetative growth in response to nutrients via the Ras-cAMP signaling pathway; partially redundant with Tpk1p and Tpk3p; localizes to P-bodies during stationary phase; relocalizes to the cytosol in response to hypoxia; GO_component: GO:0005952 - cAMP-dependent protein kinase complex [Evidence IDA,IPI] [PMID 12024012]; GO_component: GO:0005952 - cAMP-dependent protein kinase complex [Evidence IGI] [PMID 3036373]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 22932476]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 12024012]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 18417610]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22932476]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004691 - cAMP-dependent protein kinase activity [Evidence IEA]; GO_function: GO:0004691 - cAMP-dependent protein kinase activity [Evidence IDA] [PMID 12024012]; GO_function: GO:0004691 - cAMP-dependent protein kinase activity [Evidence IGI,ISS] [PMID 3036373]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0004672 - protein kinase activity [Evidence IEA]; GO_function: GO:0004672 - protein kinase activity [Evidence IDA] [PMID 16319894]; GO_function: GO:0004674 - protein serine/threonine kinase activity [Evidence IEA,IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016772 - transferase activity, transferring phosphorus-containing groups [Evidence IEA]; GO_process: GO:0007265 - Ras protein signal transduction [Evidence IGI,ISS] [PMID 3036373]; GO_process: GO:0001403 - invasive growth in response to glucose limitation [Evidence IMP] [PMID 12150916]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; GO_process: GO:0010737 - protein kinase A signaling [Evidence IGI] [PMID 20133652]; GO_process: GO:0006468 - protein phosphorylation [Evidence IEA]; GO_process: GO:0006468 - protein phosphorylation [Evidence IDA] [PMID 12024012]; GO_process: GO:0006468 - protein phosphorylation [Evidence IDA] [PMID 16319894]; cAMP-dependent protein kinase catalytic subunit TPK2 3552222 TPK2 30035183 TPK2 Sugiyamaella lignohabitans cAMP-dependent protein kinase catalytic subunit TPK2 XP_018738038.1 3550561 R 796027 CDS AWJ20_3190 30035185 complement(3554220..3555143) B 1 NC_031674.1 uncharacterized protein 3555143 30035185 AWJ20_3190 Sugiyamaella lignohabitans uncharacterized protein XP_018738039.1 3554220 R 796027 CDS AWJ20_3191 30035186 3561422..3562117 B 1 NC_031674.1 uncharacterized protein 3562117 30035186 AWJ20_3191 Sugiyamaella lignohabitans uncharacterized protein XP_018738040.1 3561422 D 796027 CDS AWJ20_3192 30035187 complement(3562267..3563559) B 1 NC_031674.1 Component of the conserved oligomeric Golgi complex; a cytosolic tethering complex (Cog1p through Cog8p) that functions in protein trafficking to mediate fusion of transport vesicles to Golgi compartments; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA]; GO_component: GO:0017119 - Golgi transport complex [Evidence IEA]; GO_component: GO:0017119 - Golgi transport complex [Evidence IPI] [PMID 11703943]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0032258 - CVT pathway [Evidence IMP] [PMID 20065092]; GO_process: GO:0006891 - intra-Golgi vesicle-mediated transport [Evidence IGI,IPI] [PMID 11703943]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Cog8p 3563559 COG8 30035187 COG8 Sugiyamaella lignohabitans Cog8p XP_018738041.1 3562267 R 796027 CDS AWJ20_3193 30035188 complement(3567513..3568946) B 1 NC_031674.1 uncharacterized protein 3568946 30035188 AWJ20_3193 Sugiyamaella lignohabitans uncharacterized protein XP_018738042.1 3567513 R 796027 CDS AWJ20_3194 30035189 3572479..3573252 B 1 NC_031674.1 Subunit d of the V0 integral membrane domain of V-ATPase; part of the electrogenic proton pump found in the endomembrane system; required for V1 domain assembly on the vacuolar membrane; the V0 integral membrane domain of vacuolar H+-ATPase (V-ATPase) has five subunits; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 8509410]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0033179 - proton-transporting V-type ATPase, V0 domain [Evidence IEA]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0000220 - vacuolar proton-transporting V-type ATPase, V0 domain [Evidence TAS] [PMID 10224039]; GO_component: GO:0000220 - vacuolar proton-transporting V-type ATPase, V0 domain [Evidence TAS] [PMID 9442887]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0015078 - hydrogen ion transmembrane transporter activity [Evidence IEA]; GO_function: GO:0046961 - proton-transporting ATPase activity, rotational mechanism [Evidence IDA,IMP] [PMID 8509410]; GO_process: GO:0015991 - ATP hydrolysis coupled proton transport [Evidence IEA]; GO_process: GO:0006811 - ion transport [Evidence IEA]; GO_process: GO:0015992 - proton transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0007035 - vacuolar acidification [Evidence TAS] [PMID 10224039]; GO_process: GO:0007035 - vacuolar acidification [Evidence TAS] [PMID 9442887]; GO_process: GO:0007034 - vacuolar transport [Evidence IDA,IMP] [PMID 8509410]; H(+)-transporting V0 sector ATPase subunit d 3573252 VMA6 30035189 VMA6 Sugiyamaella lignohabitans H(+)-transporting V0 sector ATPase subunit d XP_018738043.1 3572479 D 796027 CDS AWJ20_3195 30035190 complement(3573549..3575966) B 1 NC_031674.1 Ubiquitin-specific protease that cleaves Ub-protein fusions; UBP13 has a paralog, UBP9, that arose from the whole genome duplication; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0008234 - cysteine-type peptidase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_function: GO:0004843 - ubiquitin-specific protease activity [Evidence IDA] [PMID 11076031]; GO_process: GO:0010995 - free ubiquitin chain depolymerization [Evidence IMP] [PMID 11076031]; GO_process: GO:0006508 - proteolysis [Evidence IEA]; GO_process: GO:0006511 - ubiquitin-dependent protein catabolic process [Evidence IEA]; Ubp13p 3575966 UBP13 30035190 UBP13 Sugiyamaella lignohabitans Ubp13p XP_018738044.1 3573549 R 796027 CDS AWJ20_3196 30035191 3581437..3583515 B 1 NC_031674.1 Activator of Chs3p (chitin synthase III) during vegetative growth; recruits Chs3p to the bud neck via interaction with Bni4p; SKT5 has a paralog, SHC1, that arose from the whole genome duplication; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 15470103]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 9314530]; GO_component: GO:0000144 - cellular bud neck septin ring [Evidence IDA] [PMID 9314530]; GO_component: GO:0000131 - incipient cellular bud site [Evidence IDA] [PMID 15470103]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_function: GO:0008047 - enzyme activator activity [Evidence IMP] [PMID 9234668]; GO_process: GO:0034221 - fungal-type cell wall chitin biosynthetic process [Evidence IMP] [PMID 17142567]; GO_process: GO:0034221 - fungal-type cell wall chitin biosynthetic process [Evidence IMP] [PMID 9234668]; Skt5p 3583515 SKT5 30035191 SKT5 Sugiyamaella lignohabitans Skt5p XP_018738045.1 3581437 D 796027 CDS AWJ20_3197 30035192 3583776..3584261 B 1 NC_031674.1 uncharacterized protein 3584261 30035192 AWJ20_3197 Sugiyamaella lignohabitans uncharacterized protein XP_018738046.1 3583776 D 796027 CDS AWJ20_3198 30035193 3586674..3587921 B 1 NC_031674.1 Cell wall protein with similarity to glucanases; may play a role in conjugation during mating based on its regulation by Ste12p; GO_component: GO:0005618 - cell wall [Evidence IEA,IEA]; GO_component: GO:0005576 - extracellular region [Evidence IEA]; GO_component: GO:0009277 - fungal-type cell wall [Evidence IDA] [PMID 9748433]; GO_function: GO:0042973 - glucan endo-1,3-beta-D-glucosidase activity [Evidence ISS] [PMID 9748433]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016798 - hydrolase activity, acting on glycosyl bonds [Evidence IEA]; GO_function: GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]; GO_process: GO:0005975 - carbohydrate metabolic process [Evidence IEA]; GO_process: GO:0007109 - cytokinesis, completion of separation [Evidence IMP] [PMID 9748433]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; Scw11p 3587921 SCW11 30035193 SCW11 Sugiyamaella lignohabitans Scw11p XP_018738047.1 3586674 D 796027 CDS AWJ20_3199 30035194 join(3589312..3589336,3589711..3590822) B 1 NC_031674.1 Vacuolar transporter that mediates zinc transport into the vacuole; overexpression confers resistance to cobalt and rhodium; protein abundance increases in response to DNA replication stress; COT1 has a paralog, ZRC1, that arose from the whole genome duplication; GO_component: GO:0000324 - fungal-type vacuole [Evidence IDA] [PMID 9712830]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0031966 - mitochondrial membrane [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0008324 - cation transmembrane transporter activity [Evidence IEA]; GO_function: GO:0015087 - cobalt ion transmembrane transporter activity [Evidence IMP] [PMID 1508175]; GO_function: GO:0022890 - inorganic cation transmembrane transporter activity [Evidence ISS] [PMID 9075641]; GO_function: GO:0005385 - zinc ion transmembrane transporter activity [Evidence IGI] [PMID 8058041]; GO_process: GO:0006812 - cation transport [Evidence IEA]; GO_process: GO:0006882 - cellular zinc ion homeostasis [Evidence IMP] [PMID 10856230]; GO_process: GO:0006824 - cobalt ion transport [Evidence IMP] [PMID 1508175]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0006829 - zinc ion transport [Evidence IGI] [PMID 8058041]; metal cation transporter COT1 3590822 COT1 30035194 COT1 Sugiyamaella lignohabitans metal cation transporter COT1 XP_018738048.1 3589312 D 796027 CDS AWJ20_3200 30035197 3596809..3598050 B 1 NC_031674.1 Plasma membrane localized uracil permease; expression is tightly regulated by uracil levels and environmental cues; conformational alterations induced by unfolding or substrate binding result in Rsp5p-mediated ubiquitination and degradation; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA,IEA]; GO_component: GO:0045121 - membrane raft [Evidence IDA] [PMID 15536122]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 8948441]; GO_function: GO:0015205 - nucleobase transmembrane transporter activity [Evidence IEA]; GO_function: GO:0005215 - transporter activity [Evidence IEA]; GO_function: GO:0015505 - uracil:cation symporter activity [Evidence IDA] [PMID 8948441]; GO_process: GO:0015851 - nucleobase transport [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IDA] [PMID 8948441]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; GO_process: GO:0015857 - uracil transport [Evidence IDA] [PMID 8948441]; Fur4p 3598050 FUR4 30035197 FUR4 Sugiyamaella lignohabitans Fur4p XP_018738049.1 3596809 D 796027 CDS AWJ20_3201 30035198 3599232..3599696 B 1 NC_031674.1 uncharacterized protein 3599696 30035198 AWJ20_3201 Sugiyamaella lignohabitans uncharacterized protein XP_018738050.1 3599232 D 796027 CDS AWJ20_3202 30035199 3600031..3602238 B 1 NC_031674.1 Ubiquitin-binding hypothetical protein; contains one WD40 repeat in a beta-propeller fold; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm; homolog of human WDR48/UAF1, which is involved in regulating the Fanconi anemia pathway; deletion mutant is sensitive to various chemicals including phenanthroline, sanguinarine, and nordihydroguaiaretic acid; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0043130 - ubiquitin binding [Evidence IDA] [PMID 21070969]; GO_process: GO:0008150 - biological_process [Evidence ND]; Duf1p 3602238 DUF1 30035199 DUF1 Sugiyamaella lignohabitans Duf1p XP_018738051.1 3600031 D 796027 CDS AWJ20_3203 30035200 complement(3608521..3609288) B 1 NC_031674.1 Diaminohydroxyphoshoribosylaminopyrimidine deaminase; catalyzes the second step of the riboflavin biosynthesis pathway; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0008703 - 5-amino-6-(5-phosphoribosylamino)uracil reductase activity [Evidence IEA]; GO_function: GO:0008703 - 5-amino-6-(5-phosphoribosylamino)uracil reductase activity [Evidence IDA] [PMID 23620735]; GO_function: GO:0008703 - 5-amino-6-(5-phosphoribosylamino)uracil reductase activity [Evidence IMP] [PMID 4555411]; GO_function: GO:0050661 - NADP binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0009231 - riboflavin biosynthetic process [Evidence IEA,IEA,IEA]; GO_process: GO:0009231 - riboflavin biosynthetic process [Evidence IMP] [PMID 5366000]; Rib7p 3609288 RIB7 30035200 RIB7 Sugiyamaella lignohabitans Rib7p XP_018738052.1 3608521 R 796027 CDS AWJ20_3204 30035201 3609695..3610405 B 1 NC_031674.1 Beta 6 subunit of the 20S proteasome; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IC] [PMID 9087403]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IC] [PMID 9087403]; GO_component: GO:0000502 - proteasome complex [Evidence IEA]; GO_component: GO:0005839 - proteasome core complex [Evidence IEA]; GO_component: GO:0019774 - proteasome core complex, beta-subunit complex [Evidence IDA] [PMID 9087403]; GO_component: GO:0034515 - proteasome storage granule [Evidence IC] [PMID 9087403]; GO_function: GO:0004175 - endopeptidase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_function: GO:0004298 - threonine-type endopeptidase activity [Evidence IEA,IEA]; GO_process: GO:0010499 - proteasomal ubiquitin-independent protein catabolic process [Evidence IDA] [PMID 19162040]; GO_process: GO:0043161 - proteasome-mediated ubiquitin-dependent protein catabolic process [Evidence IDA] [PMID 11545745]; GO_process: GO:0043161 - proteasome-mediated ubiquitin-dependent protein catabolic process [Evidence IDA] [PMID 19029916]; GO_process: GO:0006508 - proteolysis [Evidence IEA]; GO_process: GO:0051603 - proteolysis involved in cellular protein catabolic process [Evidence IEA]; proteasome core particle subunit beta 6 3610405 PRE7 30035201 PRE7 Sugiyamaella lignohabitans proteasome core particle subunit beta 6 XP_018738053.1 3609695 D 796027 CDS AWJ20_3205 30035202 complement(3612246..3613460) B 1 NC_031674.1 microfibrillar-associated protein family protein 3613460 30035202 AWJ20_3205 Sugiyamaella lignohabitans microfibrillar-associated protein family protein XP_018738054.1 3612246 R 796027 CDS AWJ20_3206 30035203 complement(3614270..3615637) B 1 NC_031674.1 Beta subunit of the oligosaccharyl transferase glycoprotein complex; required for N-linked glycosylation of proteins in the endoplasmic reticulum; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 12860997]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 1724755]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA,IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IMP] [PMID 12974639]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005635 - nuclear envelope [Evidence IDA] [PMID 1724755]; GO_component: GO:0008250 - oligosaccharyltransferase complex [Evidence IPI] [PMID 10358084]; GO_component: GO:0008250 - oligosaccharyltransferase complex [Evidence IPI] [PMID 16297388]; GO_component: GO:0008250 - oligosaccharyltransferase complex [Evidence IPI] [PMID 9405463]; GO_function: GO:0004579 - dolichyl-diphosphooligosaccharide-protein glycotransferase activity [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA]; GO_process: GO:0000278 - mitotic cell cycle [Evidence IDA] [PMID 1724755]; GO_process: GO:0006487 - protein N-linked glycosylation [Evidence IPI] [PMID 9405463]; GO_process: GO:0018279 - protein N-linked glycosylation via asparagine [Evidence IEA]; GO_process: GO:0006486 - protein glycosylation [Evidence IEA]; Wbp1p 3615637 WBP1 30035203 WBP1 Sugiyamaella lignohabitans Wbp1p XP_018738055.1 3614270 R 796027 CDS AWJ20_3207 30035204 complement(3616502..3619438) B 1 NC_031674.1 Polyphosphatidylinositol phosphatase; dephosphorylates multiple phosphatidylinositol phosphates; involved in trans Golgi network-to-early endosome pathway; hyperosmotic stress causes translocation to actin patches; contains Sac1 and 5-ptase domains; INP53 has a paralog, INP52, that arose from the whole genome duplication; GO_component: GO:0030479 - actin cortical patch [Evidence IDA] [PMID 11094088]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11094088]; GO_component: GO:0016020 - membrane [Evidence IDA] [PMID 9560389]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0043813 - phosphatidylinositol-3,5-bisphosphate 5-phosphatase activity [Evidence IDA] [PMID 10224048]; GO_function: GO:0004438 - phosphatidylinositol-3-phosphatase activity [Evidence IDA] [PMID 10224048]; GO_function: GO:0004439 - phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity [Evidence IEA]; GO_function: GO:0004439 - phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity [Evidence IDA] [PMID 10224048]; GO_function: GO:0004439 - phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity [Evidence IMP] [PMID 9438131]; GO_function: GO:0043812 - phosphatidylinositol-4-phosphate phosphatase activity [Evidence IDA] [PMID 10224048]; GO_function: GO:0042578 - phosphoric ester hydrolase activity [Evidence IEA]; GO_process: GO:0006897 - endocytosis [Evidence IEA]; GO_process: GO:0046856 - phosphatidylinositol dephosphorylation [Evidence IEA]; GO_process: GO:0046856 - phosphatidylinositol dephosphorylation [Evidence IDA] [PMID 10224048]; GO_process: GO:0046856 - phosphatidylinositol dephosphorylation [Evidence IMP] [PMID 9438131]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; phosphatidylinositol-3-/phosphoinositide 5-phosphatase INP53 3619438 INP53 30035204 INP53 Sugiyamaella lignohabitans phosphatidylinositol-3-/phosphoinositide 5-phosphatase INP53 XP_018738056.1 3616502 R 796027 CDS AWJ20_3208 30035205 complement(3619545..3620177) B 1 NC_031674.1 Polyphosphatidylinositol phosphatase; dephosphorylates multiple phosphatidylinositol phosphates; involved in trans Golgi network-to-early endosome pathway; hyperosmotic stress causes translocation to actin patches; contains Sac1 and 5-ptase domains; INP53 has a paralog, INP52, that arose from the whole genome duplication; GO_component: GO:0030479 - actin cortical patch [Evidence IDA] [PMID 11094088]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11094088]; GO_component: GO:0016020 - membrane [Evidence IDA] [PMID 9560389]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0043813 - phosphatidylinositol-3,5-bisphosphate 5-phosphatase activity [Evidence IDA] [PMID 10224048]; GO_function: GO:0004438 - phosphatidylinositol-3-phosphatase activity [Evidence IDA] [PMID 10224048]; GO_function: GO:0004439 - phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity [Evidence IEA]; GO_function: GO:0004439 - phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity [Evidence IDA] [PMID 10224048]; GO_function: GO:0004439 - phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity [Evidence IMP] [PMID 9438131]; GO_function: GO:0043812 - phosphatidylinositol-4-phosphate phosphatase activity [Evidence IDA] [PMID 10224048]; GO_function: GO:0042578 - phosphoric ester hydrolase activity [Evidence IEA]; GO_process: GO:0006897 - endocytosis [Evidence IEA]; GO_process: GO:0046856 - phosphatidylinositol dephosphorylation [Evidence IEA]; GO_process: GO:0046856 - phosphatidylinositol dephosphorylation [Evidence IDA] [PMID 10224048]; GO_process: GO:0046856 - phosphatidylinositol dephosphorylation [Evidence IMP] [PMID 9438131]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; phosphatidylinositol-3-/phosphoinositide 5-phosphatase INP53 3620177 INP53 30035205 INP53 Sugiyamaella lignohabitans phosphatidylinositol-3-/phosphoinositide 5-phosphatase INP53 XP_018738057.1 3619545 R 796027 CDS AWJ20_3209 30035206 3621507..3622361 B 1 NC_031674.1 NADP(+)-dependent serine dehydrogenase and carbonyl reductase; acts on serine, L-allo-threonine, and other 3-hydroxy acids; green fluorescent protein fusion protein localizes to the cytoplasm and nucleus; may interact with ribosomes, based on co-purification experiments; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005840 - ribosome [Evidence IDA] [PMID 16702403]; GO_function: GO:0004090 - carbonyl reductase (NADPH) activity [Evidence IDA] [PMID 18630881]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IDA] [PMID 17962934]; GO_function: GO:0031132 - serine 3-dehydrogenase activity [Evidence IDA] [PMID 12535615]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IC] [PMID 12535615]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; oxidoreductase 3622361 30035206 AWJ20_3209 Sugiyamaella lignohabitans oxidoreductase XP_018738058.1 3621507 D 796027 CDS AWJ20_3210 30035208 3622844..3623701 B 1 NC_031674.1 NADP(+)-dependent serine dehydrogenase and carbonyl reductase; acts on serine, L-allo-threonine, and other 3-hydroxy acids; green fluorescent protein fusion protein localizes to the cytoplasm and nucleus; may interact with ribosomes, based on co-purification experiments; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005840 - ribosome [Evidence IDA] [PMID 16702403]; GO_function: GO:0004090 - carbonyl reductase (NADPH) activity [Evidence IDA] [PMID 18630881]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IDA] [PMID 17962934]; GO_function: GO:0031132 - serine 3-dehydrogenase activity [Evidence IDA] [PMID 12535615]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IC] [PMID 12535615]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; oxidoreductase 3623701 30035208 AWJ20_3210 Sugiyamaella lignohabitans oxidoreductase XP_018738059.1 3622844 D 796027 CDS AWJ20_3211 30035209 3624649..3626910 B 1 NC_031674.1 GTPase-activating protein for yeast Rab family members; members include Ypt7p (most effective), Ypt1p, Ypt31p, and Ypt32p (in vitro); involved in vesicle mediated protein trafficking; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0005096 - GTPase activator activity [Evidence IEA]; GO_function: GO:0005097 - Rab GTPase activator activity [Evidence IEA]; GO_function: GO:0005097 - Rab GTPase activator activity [Evidence IDA,IMP,IPI,ISS] [PMID 10508155]; GO_process: GO:0043547 - positive regulation of GTPase activity [Evidence IEA]; GO_process: GO:0032851 - positive regulation of Rab GTPase activity [Evidence IEA]; GO_process: GO:0032313 - regulation of Rab GTPase activity [Evidence IEA]; GO_process: GO:0032889 - regulation of vacuole fusion, non-autophagic [Evidence IMP] [PMID 18809726]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IDA] [PMID 11118206]; Gyp7p 3626910 GYP7 30035209 GYP7 Sugiyamaella lignohabitans Gyp7p XP_018738060.1 3624649 D 796027 CDS AWJ20_3212 30035210 3632368..3634773 B 1 NC_031674.1 Major isoform of large subunit of ribonucleotide-diphosphate reductase; the RNR complex catalyzes rate-limiting step in dNTP synthesis, regulated by DNA replication and DNA damage checkpoint pathways via localization of small subunits; relative distribution to the nucleus increases upon DNA replication stress; RNR1 has a paralog, RNR3, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 12732713]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 9315670]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_component: GO:0005971 - ribonucleoside-diphosphate reductase complex [Evidence IEA]; GO_component: GO:0005971 - ribonucleoside-diphosphate reductase complex [Evidence IDA] [PMID 10716984]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IDA] [PMID 16537479]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0004748 - ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor [Evidence IEA,IEA]; GO_function: GO:0004748 - ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor [Evidence IDA] [PMID 10535923]; GO_function: GO:0004748 - ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor [Evidence IDA] [PMID 10716984]; GO_function: GO:0004748 - ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor [Evidence IDA] [PMID 11893751]; GO_function: GO:0004748 - ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor [Evidence IMP] [PMID 8552025]; GO_process: GO:0006260 - DNA replication [Evidence IEA,IEA,IEA]; GO_process: GO:0009263 - deoxyribonucleotide biosynthetic process [Evidence IDA] [PMID 10535923]; GO_process: GO:0009263 - deoxyribonucleotide biosynthetic process [Evidence IDA] [PMID 5459124]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; ribonucleotide-diphosphate reductase subunit RNR1 3634773 RNR1 30035210 RNR1 Sugiyamaella lignohabitans ribonucleotide-diphosphate reductase subunit RNR1 XP_018738061.1 3632368 D 796027 CDS AWJ20_3213 30035211 complement(3634970..3636352) B 1 NC_031674.1 tyrosine protein phosphatase PTP1 3636352 PTP1 30035211 PTP1 Sugiyamaella lignohabitans tyrosine protein phosphatase PTP1 XP_018738062.1 3634970 R 796027 CDS AWJ20_3214 30035212 complement(3636781..3640173) B 1 NC_031674.1 Zinc finger protein containing five transmembrane domains; null mutant exhibits strongly fragmented vacuoles and sensitivity to brefeldin A, a drug which is known to affect intracellular transport; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISS] [PMID 11169758]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006897 - endocytosis [Evidence IMP] [PMID 11378903]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Bre4p 3640173 BRE4 30035212 BRE4 Sugiyamaella lignohabitans Bre4p XP_018738063.1 3636781 R 796027 CDS AWJ20_3215 30035213 complement(3640974..3643436) B 1 NC_031674.1 Cytoplasmic hypothetical protein; possibly involved in vacuolar protein degradation; not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase); null mutants exhibit normal growth; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; Vid27p 3643436 VID27 30035213 VID27 Sugiyamaella lignohabitans Vid27p XP_018738064.1 3640974 R 796027 CDS AWJ20_3216 30035214 3643999..3644772 B 1 NC_031674.1 hypothetical protein; null mutant lacks mitochondrial DNA and cannot grow on glycerol; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence ISS] [PMID 10029995]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0000002 - mitochondrial genome maintenance [Evidence IMP] [PMID 19751518]; GO_process: GO:0007005 - mitochondrion organization [Evidence IMP] [PMID 10029995]; Rrg9p 3644772 RRG9 30035214 RRG9 Sugiyamaella lignohabitans Rrg9p XP_018738065.1 3643999 D 796027 CDS AWJ20_3217 30035215 3645934..3647169 B 1 NC_031674.1 Protein that associates with the INO80 chromatin remodeling complex; associates with the INO80 complex under low-salt conditions; essential for growth under anaerobic conditions; protein abundance increases in response to DNA replication stress; GO_component: GO:0031011 - Ino80 complex [Evidence IEA]; GO_component: GO:0031011 - Ino80 complex [Evidence IPI] [PMID 24034245]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006281 - DNA repair [Evidence IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0016568 - chromatin modification [Evidence IEA]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Ies2p 3647169 IES2 30035215 IES2 Sugiyamaella lignohabitans Ies2p XP_018738066.1 3645934 D 796027 CDS AWJ20_3219 30035217 3647881..3650241 B 1 NC_031674.1 Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is processed to make a nucleocapsid-like protein (Gag), reverse transcriptase (RT), protease (PR), and integrase (IN); similar to retroviral genes; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9448009]; GO_component: GO:0000943 - retrotransposon nucleocapsid [Evidence ISS] [PMID 9582191]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA,IEA]; GO_function: GO:0003887 - DNA-directed DNA polymerase activity [Evidence ISS] [PMID 9582191]; GO_function: GO:0003723 - RNA binding [Evidence IEA,IEA]; GO_function: GO:0003723 - RNA binding [Evidence ISS] [PMID 9582191]; GO_function: GO:0004523 - RNA-DNA hybrid ribonuclease activity [Evidence IEA]; GO_function: GO:0003964 - RNA-directed DNA polymerase activity [Evidence IEA,IEA]; GO_function: GO:0003964 - RNA-directed DNA polymerase activity [Evidence ISS] [PMID 9582191]; GO_function: GO:0004190 - aspartic-type endopeptidase activity [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0004519 - endonuclease activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004518 - nuclease activity [Evidence IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016779 - nucleotidyltransferase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence ISS] [PMID 9582191]; GO_function: GO:0004540 - ribonuclease activity [Evidence ISS] [PMID 9582191]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0015074 - DNA integration [Evidence IEA,IEA]; GO_process: GO:0006310 - DNA recombination [Evidence IEA]; GO_process: GO:0006261 - DNA-dependent DNA replication [Evidence IEA,IEA]; GO_process: GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic [Evidence IEA]; GO_process: GO:0006278 - RNA-dependent DNA replication [Evidence IEA,IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0090305 - nucleic acid phosphodiester bond hydrolysis [Evidence IEA]; GO_process: GO:0006508 - proteolysis [Evidence IEA]; GO_process: GO:0032196 - transposition [Evidence IEA]; GO_process: GO:0032197 - transposition, RNA-mediated [Evidence ISS] [PMID 9582191]; GO_process: GO:0019076 - viral release from host cell [Evidence IEA]; gag-pol fusion protein 3650241 30035217 AWJ20_3219 Sugiyamaella lignohabitans gag-pol fusion protein XP_018738067.1 3647881 D 796027 CDS AWJ20_3222 30035221 3655003..3656094 B 1 NC_031674.1 uncharacterized protein 3656094 30035221 AWJ20_3222 Sugiyamaella lignohabitans uncharacterized protein XP_018738068.1 3655003 D 796027 CDS AWJ20_3223 30035222 complement(3656193..3657086) B 1 NC_031674.1 uncharacterized protein 3657086 30035222 AWJ20_3223 Sugiyamaella lignohabitans uncharacterized protein XP_018738069.1 3656193 R 796027 CDS AWJ20_3224 30035223 3658297..3658842 B 1 NC_031674.1 uncharacterized protein 3658842 30035223 AWJ20_3224 Sugiyamaella lignohabitans uncharacterized protein XP_018738070.1 3658297 D 796027 CDS AWJ20_3227 30035226 3665388..3666929 B 1 NC_031674.1 Plasma membrane permease; mediates uptake of glycerophosphoinositol and glycerophosphocholine as sources of the nutrients inositol and phosphate; expression and transport rate are regulated by phosphate and inositol availability; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 16924500]; GO_component: GO:0005886 - plasma membrane [Evidence IMP] [PMID 9691030]; GO_function: GO:0015169 - glycerol-3-phosphate transmembrane transporter activity [Evidence IGI,IMP] [PMID 20133652]; GO_function: GO:0001406 - glycerophosphodiester transmembrane transporter activity [Evidence IDA] [PMID 16924500]; GO_function: GO:0001406 - glycerophosphodiester transmembrane transporter activity [Evidence IMP] [PMID 9691030]; GO_function: GO:0022857 - transmembrane transporter activity [Evidence IEA]; GO_function: GO:0005215 - transporter activity [Evidence IEA]; GO_process: GO:0015794 - glycerol-3-phosphate transport [Evidence IGI,IMP] [PMID 20133652]; GO_process: GO:0001407 - glycerophosphodiester transport [Evidence IDA] [PMID 16924500]; GO_process: GO:0001407 - glycerophosphodiester transport [Evidence IMP] [PMID 9691030]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IMP] [PMID 9691030]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; Git1p 3666929 GIT1 30035226 GIT1 Sugiyamaella lignohabitans Git1p XP_018738071.1 3665388 D 796027 CDS AWJ20_3228 30035227 complement(3667038..3670274) B 1 NC_031674.1 Protein with similarity to P-type ATPase sodium pumps; member of the Na+ efflux ATPase family; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 16622836]; GO_component: GO:0005886 - plasma membrane [Evidence ISS] [PMID 7664728]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0015662 - ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism [Evidence ISS] [PMID 7664728]; GO_function: GO:0019829 - cation-transporting ATPase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_function: GO:0008554 - sodium-exporting ATPase activity, phosphorylative mechanism [Evidence IEA]; GO_process: GO:0006812 - cation transport [Evidence IEA]; GO_process: GO:0006811 - ion transport [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0035725 - sodium ion transmembrane transport [Evidence IEA]; GO_process: GO:0006814 - sodium ion transport [Evidence IEA]; GO_process: GO:0006814 - sodium ion transport [Evidence ISS] [PMID 7664728]; GO_process: GO:0055085 - transmembrane transport [Evidence ISS] [PMID 7664728]; GO_process: GO:0006810 - transport [Evidence IEA]; putative Na(+)-exporting P-type ATPase ENA5 3670274 ENA5 30035227 ENA5 Sugiyamaella lignohabitans putative Na(+)-exporting P-type ATPase ENA5 XP_018738072.1 3667038 R 796027 CDS AWJ20_3229 30035228 3671466..3672569 B 1 NC_031674.1 Type I HSP40 co-chaperone; involved in regulation of HSP90 and HSP70 functions; critical for determining cell size at Start as a function of growth rate; involved in protein translocation across membranes; member of the DnaJ family; GO_component: GO:0072380 - TRC complex [Evidence IDA] [PMID 20850366]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 1869583]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 8144572]; GO_component: GO:0048471 - perinuclear region of cytoplasm [Evidence IEA]; GO_component: GO:0048471 - perinuclear region of cytoplasm [Evidence IDA] [PMID 1869583]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0001671 - ATPase activator activity [Evidence IDA] [PMID 1400408]; GO_function: GO:0001671 - ATPase activator activity [Evidence IDA] [PMID 15342786]; GO_function: GO:0031072 - heat shock protein binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0051082 - unfolded protein binding [Evidence IEA]; GO_function: GO:0051082 - unfolded protein binding [Evidence IDA] [PMID 9774392]; GO_process: GO:0006458 - 'de novo' protein folding [Evidence IMP] [PMID 10567418]; GO_process: GO:0030433 - ER-associated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 15252059]; GO_process: GO:0030433 - ER-associated ubiquitin-dependent protein catabolic process [Evidence IGI,IMP] [PMID 15342786]; GO_process: GO:0006457 - protein folding [Evidence IEA]; GO_process: GO:0042026 - protein refolding [Evidence IDA] [PMID 9674429]; GO_process: GO:0045047 - protein targeting to ER [Evidence IMP] [PMID 1473150]; GO_process: GO:0006626 - protein targeting to mitochondrion [Evidence IMP] [PMID 1729605]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0009408 - response to heat [Evidence IEA]; GO_process: GO:0006950 - response to stress [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; type I HSP40 co-chaperone YDJ1 3672569 YDJ1 30035228 YDJ1 Sugiyamaella lignohabitans type I HSP40 co-chaperone YDJ1 XP_018738073.1 3671466 D 796027 CDS AWJ20_3230 30035230 complement(3672785..3674236) B 1 NC_031674.1 Pseudouridine synthase catalytic subunit of box H/ACA snoRNPs; acts on both large and small rRNAs and on snRNA U2; mutations in human ortholog dyskerin cause the disorder dyskeratosis congenita; small nucleolar ribonucleoprotein particles are also known as snoRNPs; GO_component: GO:0030686 - 90S preribosome [Evidence IDA] [PMID 12150911]; GO_component: GO:0031429 - box H/ACA snoRNP complex [Evidence IPI] [PMID 9472021]; GO_component: GO:0005694 - chromosome [Evidence IEA]; GO_component: GO:0000775 - chromosome, centromeric region [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA,IEA]; GO_component: GO:0005874 - microtubule [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IC] [PMID 9472021]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA,IEA]; GO_function: GO:0016853 - isomerase activity [Evidence IEA]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_function: GO:0009982 - pseudouridine synthase activity [Evidence IEA]; GO_function: GO:0009982 - pseudouridine synthase activity [Evidence IDA] [PMID 15962000]; GO_function: GO:0009982 - pseudouridine synthase activity [Evidence ISA] [PMID 8710514]; GO_function: GO:0009982 - pseudouridine synthase activity [Evidence IMP] [PMID 9472021]; GO_process: GO:0009451 - RNA modification [Evidence IEA]; GO_process: GO:0006396 - RNA processing [Evidence IEA]; GO_process: GO:0000495 - box H/ACA snoRNA 3'-end processing [Evidence IMP] [PMID 15964797]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0007067 - mitotic nuclear division [Evidence IEA]; GO_process: GO:0001522 - pseudouridine synthesis [Evidence IEA]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0006364 - rRNA processing [Evidence IMP] [PMID 9472021]; GO_process: GO:0031118 - rRNA pseudouridine synthesis [Evidence IMP] [PMID 9472021]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; GO_process: GO:0031120 - snRNA pseudouridine synthesis [Evidence IDA,IMP] [PMID 15962000]; pseudouridine synthase CBF5 3674236 CBF5 30035230 CBF5 Sugiyamaella lignohabitans pseudouridine synthase CBF5 XP_018738074.1 3672785 R 796027 CDS AWJ20_3231 30035231 complement(3674628..3675935) B 1 NC_031674.1 Component of the ESCRT-I complex; ESCRT-I is involved in ubiquitin-dependent sorting of proteins into the endosome; prevents polyubiquitination of the arrestin-related protein Rim8p, thereby directing its monoubiquitination by Rsp5p; homologous to the mouse and human Tsg101 tumor susceptibility gene; mutants exhibit a Class E Vps phenotype; GO_component: GO:0000813 - ESCRT I complex [Evidence IDA] [PMID 15044434]; GO_component: GO:0000813 - ESCRT I complex [Evidence IPI] [PMID 16615894]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0009898 - cytoplasmic side of plasma membrane [Evidence IDA] [PMID 20028738]; GO_component: GO:0005768 - endosome [Evidence IEA,IEA]; GO_component: GO:0005768 - endosome [Evidence IDA,IPI] [PMID 11511343]; GO_component: GO:0031902 - late endosome membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0016881 - acid-amino acid ligase activity [Evidence IEA]; GO_function: GO:0043130 - ubiquitin binding [Evidence IDA] [PMID 19380877]; GO_process: GO:0006464 - cellular protein modification process [Evidence IEA]; GO_process: GO:0045324 - late endosome to vacuole transport [Evidence IMP] [PMID 17145965]; GO_process: GO:1902915 - negative regulation of protein polyubiquitination [Evidence IMP] [PMID 23645667]; GO_process: GO:0006612 - protein targeting to membrane [Evidence IMP,IPI] [PMID 11511343]; GO_process: GO:0006623 - protein targeting to vacuole [Evidence IMP,IPI] [PMID 11511343]; GO_process: GO:0015031 - protein transport [Evidence IEA,IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0043162 - ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway [Evidence IC] [PMID 15086794]; ubiquitin-binding ESCRT-I subunit protein STP22 3675935 STP22 30035231 STP22 Sugiyamaella lignohabitans ubiquitin-binding ESCRT-I subunit protein STP22 XP_018738075.1 3674628 R 796027 CDS AWJ20_3232 30035232 3681197..3683188 B 1 NC_031674.1 Zinc finger protein 420 3683188 ADR1 30035232 ADR1 Sugiyamaella lignohabitans Zinc finger protein 420 XP_018738076.1 3681197 D 796027 CDS AWJ20_3233 30035233 complement(3683378..3684190) B 1 NC_031674.1 Peroxisomal 2,4-dienoyl-CoA reductase; auxiliary enzyme of fatty acid beta-oxidation; homodimeric enzyme required for growth and sporulation on petroselineate medium; expression induced during late sporulation and in the presence of oleate; GO_component: GO:0005782 - peroxisomal matrix [Evidence IDA] [PMID 9268358]; GO_component: GO:0005777 - peroxisome [Evidence IEA,IEA]; GO_function: GO:0008670 - 2,4-dienoyl-CoA reductase (NADPH) activity [Evidence IEA]; GO_function: GO:0008670 - 2,4-dienoyl-CoA reductase (NADPH) activity [Evidence IDA,ISS] [PMID 9268358]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_process: GO:0030437 - ascospore formation [Evidence IEP,IMP] [PMID 7969036]; GO_process: GO:0009062 - fatty acid catabolic process [Evidence IDA,ISS] [PMID 9268358]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; GO_process: GO:0030435 - sporulation resulting in formation of a cellular spore [Evidence IEA]; Sps19p 3684190 SPS19 30035233 SPS19 Sugiyamaella lignohabitans Sps19p XP_018738077.1 3683378 R 796027 CDS AWJ20_3234 30035234 3686347..3687354 B 1 NC_031674.1 Nem1-Spo7 phosphatase catalytic subunit NEM1 3687354 NEM1 30035234 NEM1 Sugiyamaella lignohabitans Nem1-Spo7 phosphatase catalytic subunit NEM1 XP_018738078.1 3686347 D 796027 CDS AWJ20_3235 30035235 complement(3687449..3690301) B 1 NC_031674.1 Kinesin-related motor protein; required for mitotic spindle assembly, chromosome segregation, and 2 micron plasmid partitioning; functionally redundant with Cin8p for chromosomal but not plasmid functions; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA]; GO_component: GO:0005871 - kinesin complex [Evidence IEA]; GO_component: GO:0005871 - kinesin complex [Evidence TAS] [PMID 9153752]; GO_component: GO:0005874 - microtubule [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_component: GO:0005819 - spindle [Evidence IEA]; GO_component: GO:0005876 - spindle microtubule [Evidence IDA] [PMID 1618910]; GO_component: GO:0005816 - spindle pole body [Evidence IDA] [PMID 9585415]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0008017 - microtubule binding [Evidence IEA]; GO_function: GO:0003777 - microtubule motor activity [Evidence IEA]; GO_function: GO:0003777 - microtubule motor activity [Evidence IGI] [PMID 1618910]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0005200 - structural constituent of cytoskeleton [Evidence IPI] [PMID 9585415]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0007019 - microtubule depolymerization [Evidence IMP] [PMID 19041752]; GO_process: GO:0007018 - microtubule-based movement [Evidence IEA]; GO_process: GO:0007067 - mitotic nuclear division [Evidence IEA]; GO_process: GO:0000070 - mitotic sister chromatid segregation [Evidence IGI] [PMID 7860634]; GO_process: GO:0000022 - mitotic spindle elongation [Evidence IMP] [PMID 9813090]; GO_process: GO:0030541 - plasmid partitioning [Evidence IMP] [PMID 19364922]; GO_process: GO:0090307 - spindle assembly involved in mitosis [Evidence IMP] [PMID 9813090]; GO_process: GO:0000073 - spindle pole body separation [Evidence IGI] [PMID 1618897]; GO_process: GO:0000073 - spindle pole body separation [Evidence IGI] [PMID 1618910]; Kip1p 3690301 KIP1 30035235 KIP1 Sugiyamaella lignohabitans Kip1p XP_018738079.1 3687449 R 796027 CDS AWJ20_3236 30035236 complement(3692379..3693545) B 1 NC_031674.1 Subunit C of the V1 peripheral membrane domain of V-ATPase; part of the electrogenic proton pump found throughout the endomembrane system; required for the V1 domain to assemble onto the vacuolar membrane; the V1 peripheral membrane domain of vacuolar H+-ATPase (V-ATPase) has eight subunits; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence TAS] [PMID 11717306]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0033180 - proton-transporting V-type ATPase, V1 domain [Evidence IEA]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0000221 - vacuolar proton-transporting V-type ATPase, V1 domain [Evidence TAS] [PMID 10224039]; GO_component: GO:0000221 - vacuolar proton-transporting V-type ATPase, V1 domain [Evidence TAS] [PMID 9442887]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0015078 - hydrogen ion transmembrane transporter activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0046961 - proton-transporting ATPase activity, rotational mechanism [Evidence TAS] [PMID 10224039]; GO_function: GO:0046961 - proton-transporting ATPase activity, rotational mechanism [Evidence TAS] [PMID 9442887]; GO_process: GO:0015991 - ATP hydrolysis coupled proton transport [Evidence IEA]; GO_process: GO:0006811 - ion transport [Evidence IEA]; GO_process: GO:0015992 - proton transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0007035 - vacuolar acidification [Evidence TAS] [PMID 10224039]; GO_process: GO:0007035 - vacuolar acidification [Evidence TAS] [PMID 9442887]; H(+)-transporting V1 sector ATPase subunit C 3693545 VMA5 30035236 VMA5 Sugiyamaella lignohabitans H(+)-transporting V1 sector ATPase subunit C XP_018738080.1 3692379 R 796027 CDS AWJ20_3238 30035238 complement(3697577..3698941) B 1 NC_031674.1 Plasma membrane riboflavin transporter; facilitates the uptake of vitamin B2; required for FAD-dependent processes; sequence similarity to mammalian monocarboxylate permeases, however mutants are not deficient in monocarboxylate transport; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 16204239]; GO_function: GO:0008028 - monocarboxylic acid transmembrane transporter activity [Evidence IGI,IMP] [PMID 11536335]; GO_function: GO:0032217 - riboflavin transporter activity [Evidence IGI] [PMID 16204239]; GO_process: GO:0032218 - riboflavin transport [Evidence IGI] [PMID 16204239]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Mch5p 3698941 MCH5 30035238 MCH5 Sugiyamaella lignohabitans Mch5p XP_018738081.1 3697577 R 796027 CDS AWJ20_3240 30035241 3701020..3703629 B 1 NC_031674.1 Positive regulator of genes in multiple nitrogen degradation pathways; contains DNA binding domain but does not appear to bind the dodecanucleotide sequence present in the promoter region of many genes involved in allantoin catabolism; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IC] [PMID 20581295]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0001128 - RNA polymerase II transcription coactivator activity involved in preinitiation complex assembly [Evidence IDA,IMP] [PMID 21515579]; GO_function: GO:0001190 - RNA polymerase II transcription factor binding transcription factor activity involved in positive regulation of transcription [Evidence IPI] [PMID 10906145]; GO_function: GO:0001190 - RNA polymerase II transcription factor binding transcription factor activity involved in positive regulation of transcription [Evidence IMP] [PMID 17603098]; GO_function: GO:0001135 - RNA polymerase II transcription factor recruiting transcription factor activity [Evidence IDA,IMP] [PMID 21515579]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0000981 - sequence-specific DNA binding RNA polymerase II transcription factor activity [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0001080 - nitrogen catabolite activation of transcription from RNA polymerase II promoter [Evidence IPI] [PMID 10906145]; GO_process: GO:0001080 - nitrogen catabolite activation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 7899074]; GO_process: GO:1901717 - positive regulation of gamma-aminobutyric acid catabolic process [Evidence IMP] [PMID 2406136]; GO_process: GO:1901714 - positive regulation of urea catabolic process [Evidence IMP] [PMID 2406136]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA,IEA]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA,IEA]; Dal81p 3703629 DAL81 30035241 DAL81 Sugiyamaella lignohabitans Dal81p XP_018738082.1 3701020 D 796027 CDS AWJ20_3241 30035242 complement(3703757..3704743) B 1 NC_031674.1 Catabolic L-serine (L-threonine) deaminase; catalyzes the degradation of both L-serine and L-threonine; required to use serine or threonine as the sole nitrogen source, transcriptionally induced by serine and threonine; GO_component: GO:0042645 - mitochondrial nucleoid [Evidence IDA] [PMID 15692048]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0003941 - L-serine ammonia-lyase activity [Evidence IEA]; GO_function: GO:0003941 - L-serine ammonia-lyase activity [Evidence IDA] [PMID 7042346]; GO_function: GO:0004794 - L-threonine ammonia-lyase activity [Evidence IEA]; GO_function: GO:0004794 - L-threonine ammonia-lyase activity [Evidence IDA] [PMID 7042346]; GO_function: GO:0016829 - lyase activity [Evidence IEA]; GO_function: GO:0030170 - pyridoxal phosphate binding [Evidence IEA]; GO_process: GO:0006565 - L-serine catabolic process [Evidence IGI] [PMID 7042346]; GO_process: GO:0006520 - cellular amino acid metabolic process [Evidence IEA]; GO_process: GO:0006567 - threonine catabolic process [Evidence IGI] [PMID 7042346]; L-serine/L-threonine ammonia-lyase CHA1 3704743 CHA1 30035242 CHA1 Sugiyamaella lignohabitans L-serine/L-threonine ammonia-lyase CHA1 XP_018738083.1 3703757 R 796027 CDS AWJ20_3244 30035245 complement(3708355..3709245) B 1 NC_031674.1 uncharacterized protein 3709245 30035245 AWJ20_3244 Sugiyamaella lignohabitans uncharacterized protein XP_018738084.1 3708355 R 796027 CDS AWJ20_3245 30035246 complement(3711994..3714891) B 1 NC_031674.1 Rho family guanine nucleotide exchange factor CDC24 3714891 CDC24 30035246 CDC24 Sugiyamaella lignohabitans Rho family guanine nucleotide exchange factor CDC24 XP_018738085.1 3711994 R 796027 CDS AWJ20_3246 30035247 complement(3717290..3718477) B 1 NC_031674.1 Protein localized to COPII-coated vesicles; forms a complex with Erv41p; involved in the membrane fusion stage of transport; GO_component: GO:0030134 - ER to Golgi transport vesicle [Evidence IDA] [PMID 11157978]; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0030173 - integral component of Golgi membrane [Evidence IDA] [PMID 11157978]; GO_component: GO:0030176 - integral component of endoplasmic reticulum membrane [Evidence IDA] [PMID 11157978]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006888 - ER to Golgi vesicle-mediated transport [Evidence IPI] [PMID 11157978]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IEA]; Erv46p 3718477 ERV46 30035247 ERV46 Sugiyamaella lignohabitans Erv46p XP_018738086.1 3717290 R 796027 CDS AWJ20_3247 30035248 complement(3718833..3720725) B 1 NC_031674.1 uncharacterized protein 3720725 30035248 AWJ20_3247 Sugiyamaella lignohabitans uncharacterized protein XP_018738087.1 3718833 R 796027 CDS AWJ20_3248 30035249 3721095..3722579 B 1 NC_031674.1 uncharacterized protein 3722579 30035249 AWJ20_3248 Sugiyamaella lignohabitans uncharacterized protein XP_018738088.1 3721095 D 796027 CDS AWJ20_3249 30035250 complement(3723084..3724334) B 1 NC_031674.1 Vacuolar carboxypeptidase Y (proteinase C, CPY); broad-specificity C-terminal exopeptidase involved in non-specific protein degradation in the vacuole; member of the serine carboxypeptidase family; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 11914276]; GO_component: GO:0000324 - fungal-type vacuole [Evidence IDA] [PMID 14562095]; GO_component: GO:0000324 - fungal-type vacuole [Evidence IDA] [PMID 23708375]; GO_component: GO:0005773 - vacuole [Evidence IEA,IEA,IEA]; GO_function: GO:0004180 - carboxypeptidase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_function: GO:0004185 - serine-type carboxypeptidase activity [Evidence IEA]; GO_function: GO:0004185 - serine-type carboxypeptidase activity [Evidence IDA,IMP] [PMID 8679540]; GO_process: GO:0046938 - phytochelatin biosynthetic process [Evidence IDA,IMP] [PMID 17408619]; GO_process: GO:0006508 - proteolysis [Evidence IEA,IEA]; GO_process: GO:0007039 - vacuolar protein catabolic process [Evidence TAS] [PMID 8789256]; carboxypeptidase C PRC1 3724334 PRC1 30035250 PRC1 Sugiyamaella lignohabitans carboxypeptidase C PRC1 XP_018738089.1 3723084 R 796027 CDS AWJ20_3250 30035252 3725427..3727475 B 1 NC_031674.1 uncharacterized protein 3727475 30035252 AWJ20_3250 Sugiyamaella lignohabitans uncharacterized protein XP_018738090.1 3725427 D 796027 CDS AWJ20_3251 30035253 complement(3727546..3728964) B 1 NC_031674.1 Putative X-Pro aminopeptidase; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm; YFR006W is not an essential gene; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_function: GO:0004177 - aminopeptidase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0030145 - manganese ion binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0006508 - proteolysis [Evidence IEA]; putative Xaa-Pro dipeptidase 3728964 30035253 AWJ20_3251 Sugiyamaella lignohabitans putative Xaa-Pro dipeptidase XP_018738091.1 3727546 R 796027 CDS AWJ20_3252 30035254 complement(3730067..3731602) B 1 NC_031674.1 Protein involved in producing mature rRNAs and snoRNAs; involved in pre-rRNA processing, 18S rRNA synthesis, and snoRNA synthesis; component of the small subunit processome complex, which is required for processing of pre-18S rRNA; GO_component: GO:0030686 - 90S preribosome [Evidence IDA] [PMID 12150911]; GO_component: GO:0031428 - box C/D snoRNP complex [Evidence IDA] [PMID 10094313]; GO_component: GO:0031428 - box C/D snoRNP complex [Evidence IPI] [PMID 10733567]; GO_component: GO:0031428 - box C/D snoRNP complex [Evidence IDA] [PMID 11081632]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 9372940]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0032040 - small-subunit processome [Evidence IDA] [PMID 12068309]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_process: GO:0000480 - endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 10094313]; GO_process: GO:0000447 - endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 10094313]; GO_process: GO:0000472 - endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 10094313]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; RNA-processing protein NOP58 3731602 NOP58 30035254 NOP58 Sugiyamaella lignohabitans RNA-processing protein NOP58 XP_018738092.1 3730067 R 796027 CDS AWJ20_3253 30035255 3732391..3733734 B 1 NC_031674.1 uncharacterized protein 3733734 30035255 AWJ20_3253 Sugiyamaella lignohabitans uncharacterized protein XP_018738093.1 3732391 D 796027 CDS AWJ20_3254 30035256 3734112..3737453 B 1 NC_031674.1 Vacuolar alpha mannosidase; involved in free oligosaccharide (fOS) degradation; delivered to the vacuole in a novel pathway separate from the secretory pathway; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 3281936]; GO_component: GO:0005773 - vacuole [Evidence IEA,IEA]; GO_function: GO:0004559 - alpha-mannosidase activity [Evidence IEA,IEA]; GO_function: GO:0004559 - alpha-mannosidase activity [Evidence ISS] [PMID 2675832]; GO_function: GO:0004559 - alpha-mannosidase activity [Evidence IDA] [PMID 3281936]; GO_function: GO:0030246 - carbohydrate binding [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016798 - hydrolase activity, acting on glycosyl bonds [Evidence IEA]; GO_function: GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]; GO_function: GO:0015923 - mannosidase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0005975 - carbohydrate metabolic process [Evidence IEA]; GO_process: GO:0044262 - cellular carbohydrate metabolic process [Evidence ISS] [PMID 2675832]; GO_process: GO:0006013 - mannose metabolic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0009313 - oligosaccharide catabolic process [Evidence IMP] [PMID 12723970]; Ams1p 3737453 AMS1 30035256 AMS1 Sugiyamaella lignohabitans Ams1p XP_018738094.1 3734112 D 796027 CDS AWJ20_3255 30035257 3738023..3739027 B 1 NC_031674.1 Diacylglycerol kinase; localized to the endoplasmic reticulum (ER); overproduction induces enlargement of ER-like membrane structures and suppresses a temperature-sensitive sly1 mutation; contains a CTP transferase domain; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0030176 - integral component of endoplasmic reticulum membrane [Evidence IDA] [PMID 11481671]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISS] [PMID 11481671]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0031965 - nuclear membrane [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_function: GO:0004143 - diacylglycerol kinase activity [Evidence IDA] [PMID 18458075]; GO_function: GO:0004143 - diacylglycerol kinase activity [Evidence IDA] [PMID 18458076]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016772 - transferase activity, transferring phosphorus-containing groups [Evidence IEA]; GO_process: GO:0006654 - phosphatidic acid biosynthetic process [Evidence IMP] [PMID 18458075]; GO_process: GO:0006654 - phosphatidic acid biosynthetic process [Evidence IDA] [PMID 18458076]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IEA]; Dgk1p 3739027 DGK1 30035257 DGK1 Sugiyamaella lignohabitans Dgk1p XP_018738095.1 3738023 D 796027 CDS AWJ20_3256 30035258 complement(3739191..3740561) B 1 NC_031674.1 hypothetical protein that may interact with ribosomes; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm and to COPI-coated vesicles (early Golgi); mtc1 is synthetically lethal with cdc13-1; GO_component: GO:0030137 - COPI-coated vesicle [Evidence IEA]; GO_component: GO:0030137 - COPI-coated vesicle [Evidence IDA] [PMID 14562095]; GO_component: GO:0005794 - Golgi apparatus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0031410 - cytoplasmic vesicle [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IDA] [PMID 16702403]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; Mtc1p 3740561 MTC1 30035258 MTC1 Sugiyamaella lignohabitans Mtc1p XP_018738096.1 3739191 R 796027 CDS AWJ20_3257 30035259 complement(3740999..3741439) B 1 NC_031674.1 Ribosomal 60S subunit protein L20B; homologous to mammalian ribosomal protein L18A, no bacterial homolog; RPL20B has a paralog, RPL20A, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0022625 - cytosolic large ribosomal subunit [Evidence IDA] [PMID 23874617]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA,IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IC] [PMID 23874617]; GO_process: GO:0002181 - cytoplasmic translation [Evidence IC] [PMID 23874617]; GO_process: GO:0006412 - translation [Evidence IEA]; ribosomal 60S subunit protein L20B 3741439 RPL20B 30035259 RPL20B Sugiyamaella lignohabitans ribosomal 60S subunit protein L20B XP_018738097.1 3740999 R 796027 CDS AWJ20_3258 30035260 complement(3742493..3743620) B 1 NC_031674.1 Protein whose expression is induced during sporulation; not required for sporulation; heterologous expression in E. coli induces the SOS response that senses DNA damage; GO_component: GO:0005811 - lipid particle [Evidence IDA] [PMID 24390141]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0030437 - ascospore formation [Evidence IEP] [PMID 3540611]; GO_process: GO:0007126 - meiotic nuclear division [Evidence IEA]; GO_process: GO:0030435 - sporulation resulting in formation of a cellular spore [Evidence IEA]; Sps4p 3743620 SPS4 30035260 SPS4 Sugiyamaella lignohabitans Sps4p XP_018738098.1 3742493 R 796027 CDS AWJ20_3259 30035261 3746592..3748229 B 1 NC_031674.1 hexose transporter HXT5 3748229 HXT5 30035261 HXT5 Sugiyamaella lignohabitans hexose transporter HXT5 XP_018738099.1 3746592 D 796027 CDS AWJ20_3260 30035263 complement(3749329..3750072) B 1 NC_031674.1 Peroxisomal 2,4-dienoyl-CoA reductase; auxiliary enzyme of fatty acid beta-oxidation; homodimeric enzyme required for growth and sporulation on petroselineate medium; expression induced during late sporulation and in the presence of oleate; GO_component: GO:0005782 - peroxisomal matrix [Evidence IDA] [PMID 9268358]; GO_component: GO:0005777 - peroxisome [Evidence IEA,IEA]; GO_function: GO:0008670 - 2,4-dienoyl-CoA reductase (NADPH) activity [Evidence IEA]; GO_function: GO:0008670 - 2,4-dienoyl-CoA reductase (NADPH) activity [Evidence IDA,ISS] [PMID 9268358]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_process: GO:0030437 - ascospore formation [Evidence IEP,IMP] [PMID 7969036]; GO_process: GO:0009062 - fatty acid catabolic process [Evidence IDA,ISS] [PMID 9268358]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; GO_process: GO:0030435 - sporulation resulting in formation of a cellular spore [Evidence IEA]; Sps19p 3750072 SPS19 30035263 SPS19 Sugiyamaella lignohabitans Sps19p XP_018738100.1 3749329 R 796027 CDS AWJ20_3261 30035264 complement(3750695..3755716) B 1 NC_031674.1 RNA polymerase II largest subunit B220; part of central core; phosphorylation of C-terminal heptapeptide repeat domain regulates association with transcription and splicing factors; similar to bacterial beta-prime; GO_component: GO:0005665 - DNA-directed RNA polymerase II, core complex [Evidence IEA]; GO_component: GO:0005665 - DNA-directed RNA polymerase II, core complex [Evidence IDA] [PMID 1331084]; GO_component: GO:0005665 - DNA-directed RNA polymerase II, core complex [Evidence IDA] [PMID 2183013]; GO_component: GO:0005665 - DNA-directed RNA polymerase II, core complex [Evidence IDA] [PMID 2186966]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0003899 - DNA-directed RNA polymerase activity [Evidence IEA,IEA,IEA]; GO_function: GO:0001055 - RNA polymerase II activity [Evidence IDA] [PMID 8288647]; GO_function: GO:0003968 - RNA-directed RNA polymerase activity [Evidence IDA] [PMID 18004386]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016779 - nucleotidyltransferase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IEA]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IMP] [PMID 3299050]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; GO_process: GO:0019985 - translesion synthesis [Evidence IMP] [PMID 22405652]; DNA-directed RNA polymerase II core subunit RPO21 3755716 RPO21 30035264 RPO21 Sugiyamaella lignohabitans DNA-directed RNA polymerase II core subunit RPO21 XP_018738101.1 3750695 R 796027 CDS AWJ20_3262 30035265 complement(3757576..3759360) B 1 NC_031674.1 Plasma membrane protein of the Major Facilitator Superfamily (MFS); involved in amino acid uptake and drug sensitivity; VBA5 has a paralog, VBA3, that arose from a segmental duplication; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 23047103]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0022857 - transmembrane transporter activity [Evidence IEA]; GO_process: GO:0006865 - amino acid transport [Evidence IEA]; GO_process: GO:0015809 - arginine transport [Evidence IGI,IMP] [PMID 23047103]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Vba5p 3759360 VBA5 30035265 VBA5 Sugiyamaella lignohabitans Vba5p XP_018738102.1 3757576 R 796027 CDS AWJ20_3263 30035266 complement(3761595..3762059) B 1 NC_031674.1 Ubiquitin-like protein of the SUMO family; conjugated to lysine residues of target proteins; associates with transcriptionally active genes; regulates chromatid cohesion, chromosome segregation, APC-mediated proteolysis, DNA replication and septin ring dynamics; phosphorylated at Ser2; GO_component: GO:0000794 - condensed nuclear chromosome [Evidence IDA] [PMID 16782016]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 10364461]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 10579719]; GO_component: GO:0005940 - septin ring [Evidence IDA] [PMID 10364461]; GO_component: GO:0005940 - septin ring [Evidence IDA] [PMID 10579719]; GO_function: GO:0031386 - protein tag [Evidence IDA] [PMID 10364461]; GO_function: GO:0031386 - protein tag [Evidence IDA] [PMID 10579719]; GO_process: GO:0016925 - protein sumoylation [Evidence IDA] [PMID 9312010]; SUMO family protein SMT3 3762059 SMT3 30035266 SMT3 Sugiyamaella lignohabitans SUMO family protein SMT3 XP_018738103.1 3761595 R 796027 CDS AWJ20_3264 30035267 3765801..3768386 B 1 NC_031674.1 Asn and gln rich hypothetical protein; high-copy suppressor of POL1 (DNA polymerase alpha) and partial suppressor of CDC2 (polymerase delta) and CDC6 (pre-RC loading factor) mutations; overexpression results in growth inhibition; PSP1 has a paralog, YLR177W, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0000932 - cytoplasmic mRNA processing body [Evidence IDA] [PMID 23222640]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_process: GO:0008150 - biological_process [Evidence ND]; Psp1p 3768386 PSP1 30035267 PSP1 Sugiyamaella lignohabitans Psp1p XP_018738104.1 3765801 D 796027 CDS AWJ20_3265 30035268 complement(3772183..3772548) B 1 NC_031674.1 uncharacterized protein 3772548 30035268 AWJ20_3265 Sugiyamaella lignohabitans uncharacterized protein XP_018738105.1 3772183 R 796027 CDS AWJ20_3266 30035269 complement(3773704..3774897) B 1 NC_031674.1 Citrate synthase; catalyzes the condensation of acetyl coenzyme A and oxaloacetate to form citrate; the rate-limiting enzyme of the TCA cycle; nuclear encoded mitochondrial protein; CIT1 has a paralog, CIT2, that arose from the whole genome duplication; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 11502169]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 11914276]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IPI] [PMID 16962558]; GO_function: GO:0004108 - citrate (Si)-synthase activity [Evidence IEA,IEA]; GO_function: GO:0004108 - citrate (Si)-synthase activity [Evidence IDA,IMP] [PMID 17570335]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0046912 - transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer [Evidence IEA]; GO_process: GO:0046356 - acetyl-CoA catabolic process [Evidence IDA,IMP] [PMID 17570335]; GO_process: GO:0044262 - cellular carbohydrate metabolic process [Evidence IEA]; GO_process: GO:0006101 - citrate metabolic process [Evidence TAS] [PMID 9175438]; GO_process: GO:0006537 - glutamate biosynthetic process [Evidence TAS] [PMID 9175438]; GO_process: GO:0006099 - tricarboxylic acid cycle [Evidence IEA,IEA,IEA]; GO_process: GO:0006099 - tricarboxylic acid cycle [Evidence TAS] [PMID 9175438]; citrate (Si)-synthase CIT1 3774897 CIT1 30035269 CIT1 Sugiyamaella lignohabitans citrate (Si)-synthase CIT1 XP_018738106.1 3773704 R 796027 CDS AWJ20_3267 30035270 3776709..3778352 B 1 NC_031674.1 hypothetical protein; has similarity to Torpedo californica tCTL1p, which is postulated to be a choline transporter, neither null mutation nor overexpression affects choline transport; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0005887 - integral component of plasma membrane [Evidence ISS] [PMID 10923024]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 16622836]; GO_function: GO:0015220 - choline transmembrane transporter activity [Evidence IMP] [PMID 15002745]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0006810 - transport [Evidence IEA]; Pns1p 3778352 PNS1 30035270 PNS1 Sugiyamaella lignohabitans Pns1p XP_018738107.1 3776709 D 796027 CDS AWJ20_3268 30035271 complement(3778486..3779724) B 1 NC_031674.1 Methyltransferase involved in methylation of histone H4 Lys5, -8, -12; S-adenosylmethionine-dependent; zinc-finger protein, contains one canonical and two unusual fingers in unusual arrangements; deletion enhances replication of positive-strand RNA virus; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0000790 - nuclear chromatin [Evidence IDA] [PMID 22343720]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity [Evidence IDA] [PMID 22343720]; GO_function: GO:0008168 - methyltransferase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0034968 - histone lysine methylation [Evidence IDA,IMP] [PMID 22343720]; GO_process: GO:0032259 - methylation [Evidence IEA]; Set5p 3779724 SET5 30035271 SET5 Sugiyamaella lignohabitans Set5p XP_018738108.1 3778486 R 796027 CDS AWJ20_3269 30035272 3780060..3780746 B 1 NC_031674.1 hypothetical protein; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0031966 - mitochondrial membrane [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 24390141]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; Fmp10p 3780746 FMP10 30035272 FMP10 Sugiyamaella lignohabitans Fmp10p XP_018738109.1 3780060 D 796027 CDS AWJ20_3270 30035274 complement(3780794..3783541) B 1 NC_031674.1 Nuclear import receptor; mediates the nuclear localization of proteins involved in mRNA-nucleus export; promotes dissociation of mRNAs from the nucleus-cytoplasm mRNA shuttling protein Npl3p; required for retrograde import of mature tRNAs; relocalizes from cytoplasm to the nuclear periphery upon DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 9412460]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0034399 - nuclear periphery [Evidence IDA] [PMID 22842922]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9545233]; GO_function: GO:0008536 - Ran GTPase binding [Evidence IEA]; GO_function: GO:0008139 - nuclear localization sequence binding [Evidence IPI] [PMID 9545233]; GO_process: GO:0006404 - RNA import into nucleus [Evidence IMP] [PMID 16040803]; GO_process: GO:0006404 - RNA import into nucleus [Evidence IMP] [PMID 17409072]; GO_process: GO:0006403 - RNA localization [Evidence IMP] [PMID 12167699]; GO_process: GO:0006886 - intracellular protein transport [Evidence IEA]; GO_process: GO:0006609 - mRNA-binding (hnRNP) protein import into nucleus [Evidence IMP,IPI,ISS] [PMID 9412460]; GO_process: GO:0006609 - mRNA-binding (hnRNP) protein import into nucleus [Evidence IMP,IPI,ISS] [PMID 9545233]; GO_process: GO:0006606 - protein import into nucleus [Evidence IMP,IPI,ISS] [PMID 9412460]; GO_process: GO:0006606 - protein import into nucleus [Evidence IMP,IPI,ISS] [PMID 9545233]; GO_process: GO:0051031 - tRNA transport [Evidence IMP] [PMID 17409072]; GO_process: GO:0051031 - tRNA transport [Evidence IMP] [PMID 20032305]; Mtr10p 3783541 MTR10 30035274 MTR10 Sugiyamaella lignohabitans Mtr10p XP_018738110.1 3780794 R 796027 CDS AWJ20_3271 30035275 complement(3784793..3785149) B 1 NC_031674.1 5,10-methenyltetrahydrofolate synthetase; involved in folic acid biosynthesis; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0030272 - 5-formyltetrahydrofolate cyclo-ligase activity [Evidence IEA,IEA]; GO_function: GO:0030272 - 5-formyltetrahydrofolate cyclo-ligase activity [Evidence IDA] [PMID 11923304]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0009396 - folic acid-containing compound biosynthetic process [Evidence IEA]; GO_process: GO:0009396 - folic acid-containing compound biosynthetic process [Evidence IDA] [PMID 11923304]; 5-formyltetrahydrofolate cyclo-ligase 3785149 FAU1 30035275 FAU1 Sugiyamaella lignohabitans 5-formyltetrahydrofolate cyclo-ligase XP_018738111.1 3784793 R 796027 CDS AWJ20_3272 30035276 3786026..3787243 B 1 NC_031674.1 Cytosolic branched-chain amino acid (BCAA) aminotransferase; preferentially involved in BCAA catabolism; homolog of murine ECA39; highly expressed during stationary phase and repressed during logarithmic phase; BAT2 has a paralog, BAT1, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 21267457]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0052656 - L-isoleucine transaminase activity [Evidence IEA]; GO_function: GO:0052654 - L-leucine transaminase activity [Evidence IEA]; GO_function: GO:0052655 - L-valine transaminase activity [Evidence IEA]; GO_function: GO:0004084 - branched-chain-amino-acid transaminase activity [Evidence IEA,IEA]; GO_function: GO:0004084 - branched-chain-amino-acid transaminase activity [Evidence IDA] [PMID 8798704]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0008483 - transaminase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0019509 - L-methionine salvage from methylthioadenosine [Evidence IEA]; GO_process: GO:0009082 - branched-chain amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0009082 - branched-chain amino acid biosynthetic process [Evidence IDA,IMP] [PMID 8798704]; GO_process: GO:0009083 - branched-chain amino acid catabolic process [Evidence IMP] [PMID 8702755]; GO_process: GO:0009081 - branched-chain amino acid metabolic process [Evidence IEA]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0009097 - isoleucine biosynthetic process [Evidence IEA]; GO_process: GO:0009098 - leucine biosynthetic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0009099 - valine biosynthetic process [Evidence IEA]; branched-chain-amino-acid transaminase BAT2 3787243 BAT2 30035276 BAT2 Sugiyamaella lignohabitans branched-chain-amino-acid transaminase BAT2 XP_018738112.1 3786026 D 796027 CDS AWJ20_3273 30035277 complement(3787361..3789622) B 1 NC_031674.1 uncharacterized protein 3789622 30035277 AWJ20_3273 Sugiyamaella lignohabitans uncharacterized protein XP_018738113.1 3787361 R 796027 CDS AWJ20_3274 30035278 3792951..3793610 B 1 NC_031674.1 Component of the RAM signaling network; is involved in regulation of Ace2p activity and cellular morphogenesis, interacts with Kic1p and Sog2p, localizes to sites of polarized growth during budding and during the mating response; GO_component: GO:0005933 - cellular bud [Evidence IDA] [PMID 12972564]; GO_component: GO:0000131 - incipient cellular bud site [Evidence IDA] [PMID 12972564]; GO_component: GO:0005622 - intracellular [Evidence IDA] [PMID 11259593]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 12972564]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0007118 - budding cell apical bud growth [Evidence IGI,IMP] [PMID 12972564]; GO_process: GO:0007109 - cytokinesis, completion of separation [Evidence IMP] [PMID 11259593]; GO_process: GO:0008360 - regulation of cell shape [Evidence IGI] [PMID 11259593]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IMP] [PMID 12972564]; Hym1p 3793610 HYM1 30035278 HYM1 Sugiyamaella lignohabitans Hym1p XP_018738114.1 3792951 D 796027 CDS AWJ20_3275 30035279 complement(3793772..3794938) B 1 NC_031674.1 Component of the ESCRT-II complex; contains the GLUE (GRAM Like Ubiquitin binding in EAP45) domain which is involved in interactions with ESCRT-I and ubiquitin-dependent sorting of proteins into the endosome; plays a role in the formation of mutant huntingtin (Htt) aggregates in yeast; GO_component: GO:0000814 - ESCRT II complex [Evidence IDA] [PMID 12194858]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005768 - endosome [Evidence IEA]; GO_component: GO:0010008 - endosome membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0032266 - phosphatidylinositol-3-phosphate binding [Evidence IEA]; GO_function: GO:0043130 - ubiquitin binding [Evidence IEA]; GO_function: GO:0043130 - ubiquitin binding [Evidence IDA] [PMID 15029239]; GO_function: GO:0043130 - ubiquitin binding [Evidence IDA] [PMID 19380877]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0000433 - negative regulation of transcription from RNA polymerase II promoter by glucose [Evidence IMP] [PMID 11278625]; GO_process: GO:0045053 - protein retention in Golgi apparatus [Evidence IMP] [PMID 8649377]; GO_process: GO:0006623 - protein targeting to vacuole [Evidence IMP,IPI] [PMID 12194858]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0043162 - ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway [Evidence IC] [PMID 15086794]; ESCRT-II subunit protein VPS36 3794938 VPS36 30035279 VPS36 Sugiyamaella lignohabitans ESCRT-II subunit protein VPS36 XP_018738115.1 3793772 R 796027 CDS AWJ20_3276 30035280 3795846..3796742 B 1 NC_031674.1 Mitochondrial ribosomal protein of the small subunit; PET123 exhibits genetic interactions with PET122, which encodes a COX3 mRNA-specific translational activator; GO_component: GO:0005763 - mitochondrial small ribosomal subunit [Evidence IPI] [PMID 11278769]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IPI] [PMID 11278769]; GO_process: GO:0032543 - mitochondrial translation [Evidence IC] [PMID 11278769]; mitochondrial 37S ribosomal protein PET123 3796742 PET123 30035280 PET123 Sugiyamaella lignohabitans mitochondrial 37S ribosomal protein PET123 XP_018738116.1 3795846 D 796027 CDS AWJ20_3277 30035281 complement(3796990..3798735) B 1 NC_031674.1 Subunit of structure-specific Mms4p-Mus81p endonuclease; cleaves branched DNA; involved in DNA repair, replication fork stability, and joint molecule formation/resolution during meiotic recombination; promotes template switching during break-induced replication (BIR), causing non-reciprocal translocations (NRTs); helix-hairpin-helix protein; phosphorylation of non-catalytic subunit Mms4p by Cdc28p and Cdcp during mitotic cell cycle activates function of Mms4p-Mus81p; GO_component: GO:0048476 - Holliday junction resolvase complex [Evidence IDA] [PMID 17363897]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IMP,IPI] [PMID 10905349]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0008821 - crossover junction endodeoxyribonuclease activity [Evidence IDA] [PMID 17363897]; GO_function: GO:0004520 - endodeoxyribonuclease activity [Evidence IDA] [PMID 11641278]; GO_function: GO:0004519 - endonuclease activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004518 - nuclease activity [Evidence IEA,IEA]; GO_process: GO:0006259 - DNA metabolic process [Evidence IEA]; GO_process: GO:0006310 - DNA recombination [Evidence IEA]; GO_process: GO:0006281 - DNA repair [Evidence IEA]; GO_process: GO:0006281 - DNA repair [Evidence IGI] [PMID 12032096]; GO_process: GO:0006265 - DNA topological change [Evidence IGI] [PMID 11139495]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IMP] [PMID 11139495]; GO_process: GO:0000727 - double-strand break repair via break-induced replication [Evidence IGI,IMP] [PMID 23071463]; GO_process: GO:0007126 - meiotic nuclear division [Evidence IEA]; GO_process: GO:0090305 - nucleic acid phosphodiester bond hydrolysis [Evidence IEA,IEA]; GO_process: GO:0007131 - reciprocal meiotic recombination [Evidence IGI] [PMID 11641278]; GO_process: GO:0000712 - resolution of meiotic recombination intermediates [Evidence IGI] [PMID 18691964]; Mus81p 3798735 MUS81 30035281 MUS81 Sugiyamaella lignohabitans Mus81p XP_018738117.1 3796990 R 796027 CDS AWJ20_3278 30035282 3799800..3802406 B 1 NC_031674.1 putative RNA-binding protein C3H8.09c 3802406 30035282 AWJ20_3278 Sugiyamaella lignohabitans putative RNA-binding protein C3H8.09c XP_018738118.1 3799800 D 796027 CDS AWJ20_3279 30035283 complement(3802563..3804221) B 1 NC_031674.1 Subunit of a heterodimeric peroxisomal ABC transport complex; required for import of long-chain fatty acids into peroxisomes; similarity to human adrenoleukodystrophy transporter ABCD1 and ABCD2 and ALD-related proteins; mutations in ABCD1 cause X-linked adrenoleukodystrophy (X-ALD), a peroxisomal disorder; complex also includes Pxa1p; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0005779 - integral component of peroxisomal membrane [Evidence IDA] [PMID 9395310]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005778 - peroxisomal membrane [Evidence IEA]; GO_component: GO:0005777 - peroxisome [Evidence IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016887 - ATPase activity [Evidence IEA]; GO_function: GO:0042626 - ATPase activity, coupled to transmembrane movement of substances [Evidence IEA]; GO_function: GO:0042626 - ATPase activity, coupled to transmembrane movement of substances [Evidence IDA] [PMID 9395310]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:1902001 - fatty acid transmembrane transport [Evidence IDA] [PMID 9395310]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; ATP-binding cassette long-chain fatty acid transporter PXA2 3804221 PXA2 30035283 PXA2 Sugiyamaella lignohabitans ATP-binding cassette long-chain fatty acid transporter PXA2 XP_018738119.1 3802563 R 796027 CDS AWJ20_3280 30035285 complement(3805182..3806450) B 1 NC_031674.1 Mitochondrial cytochrome-c peroxidase; degrades reactive oxygen species in mitochondria, involved in the response to oxidative stress; GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IDA] [PMID 6290489]; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 11914276]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0004130 - cytochrome-c peroxidase activity [Evidence IEA]; GO_function: GO:0004130 - cytochrome-c peroxidase activity [Evidence IMP] [PMID 10589830]; GO_function: GO:0004130 - cytochrome-c peroxidase activity [Evidence IDA] [PMID 17580971]; GO_function: GO:0004130 - cytochrome-c peroxidase activity [Evidence IDA,IMP] [PMID 21334283]; GO_function: GO:0020037 - heme binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0004601 - peroxidase activity [Evidence IEA,IEA]; GO_process: GO:0034599 - cellular response to oxidative stress [Evidence IMP] [PMID 10589830]; GO_process: GO:0042744 - hydrogen peroxide catabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0006979 - response to oxidative stress [Evidence IEA]; Ccp1p 3806450 CCP1 30035285 CCP1 Sugiyamaella lignohabitans Ccp1p XP_018738120.1 3805182 R 796027 CDS AWJ20_3281 30035286 complement(3807159..3810446) B 1 NC_031674.1 serine/threonine protein kinase YAK1 3810446 YAK1 30035286 YAK1 Sugiyamaella lignohabitans serine/threonine protein kinase YAK1 XP_018738121.1 3807159 R 796027 CDS AWJ20_3282 30035287 complement(3812506..3820308) B 1 NC_031674.1 Enhanced Adherence to Polystyrene; similar to S. pombe predicted GPI-anchored SPBPJ4664.02; similar to RBT1; internal hexapeptide PATEST repeat region is expanded in allelic CaP19.8979; identical to C. albicans morphogenetic related gene CPH3 (AAM46085); no clear allele; putative cell wall adhesin 3820308 EAP1 30035287 EAP1 Sugiyamaella lignohabitans putative cell wall adhesin XP_018738122.1 3812506 R 796027 CDS AWJ20_3283 30035288 complement(3822046..3823131) B 1 NC_031674.1 Peroxisomal integral membrane peroxin; involved in the regulation of peroxisomal size, number and distribution; genetic interactions suggest that Pex28p and Pex29p act at steps upstream of those mediated by Pex30p, Pex31p, and Pex32p; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005778 - peroxisomal membrane [Evidence IEA]; GO_component: GO:0005778 - peroxisomal membrane [Evidence IDA] [PMID 12707309]; GO_component: GO:0005777 - peroxisome [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0007031 - peroxisome organization [Evidence IEA]; GO_process: GO:0007031 - peroxisome organization [Evidence IDA,IGI,IMP] [PMID 12707309]; Pex28p 3823131 PEX28 30035288 PEX28 Sugiyamaella lignohabitans Pex28p XP_018738123.1 3822046 R 796027 CDS AWJ20_3284 30035289 3825015..3825821 B 1 NC_031674.1 Protein localized to COPII-coated vesicles; forms a complex with Erv46p; involved in the membrane fusion stage of transport; has homology to human ERGIC2 (PTX1) protein; GO_component: GO:0030134 - ER to Golgi transport vesicle [Evidence IDA] [PMID 11157978]; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0033116 - endoplasmic reticulum-Golgi intermediate compartment membrane [Evidence IEA]; GO_component: GO:0030173 - integral component of Golgi membrane [Evidence IDA] [PMID 11157978]; GO_component: GO:0030176 - integral component of endoplasmic reticulum membrane [Evidence IDA] [PMID 11157978]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006888 - ER to Golgi vesicle-mediated transport [Evidence IPI] [PMID 11157978]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IEA]; Erv41p 3825821 ERV41 30035289 ERV41 Sugiyamaella lignohabitans Erv41p XP_018738124.1 3825015 D 796027 CDS AWJ20_3285 30035290 complement(3826010..3827938) B 1 NC_031674.1 uncharacterized protein 3827938 30035290 AWJ20_3285 Sugiyamaella lignohabitans uncharacterized protein XP_018738125.1 3826010 R 796027 CDS AWJ20_3286 30035291 3828987..3829406 B 1 NC_031674.1 One of two mitochondrially-localized peptidyl-tRNA hydrolases; dispensable for respiratory growth on rich medium, but required for respiratory growth on minimal medium; see also PTH2; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0004045 - aminoacyl-tRNA hydrolase activity [Evidence IEA,IEA]; GO_function: GO:0004045 - aminoacyl-tRNA hydrolase activity [Evidence IGI] [PMID 12475929]; GO_function: GO:0004045 - aminoacyl-tRNA hydrolase activity [Evidence IDA] [PMID 12799450]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_process: GO:0032543 - mitochondrial translation [Evidence IMP] [PMID 12799450]; Pth1p 3829406 PTH1 30035291 PTH1 Sugiyamaella lignohabitans Pth1p XP_018738126.1 3828987 D 796027 CDS AWJ20_3287 30035292 complement(3830574..3830981) B 1 NC_031674.1 uncharacterized protein 3830981 30035292 AWJ20_3287 Sugiyamaella lignohabitans uncharacterized protein XP_018738127.1 3830574 R 796027 CDS AWJ20_3288 30035293 complement(3834624..3835100) B 1 NC_031674.1 uncharacterized protein 3835100 30035293 AWJ20_3288 Sugiyamaella lignohabitans uncharacterized protein XP_018738128.1 3834624 R 796027 CDS AWJ20_3290 30035296 complement(3836571..3838691) B 1 NC_031674.1 Lanosterol synthase; an essential enzyme that catalyzes the cyclization of squalene 2,3-epoxide, a step in ergosterol biosynthesis; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0005811 - lipid particle [Evidence IEA,IEA]; GO_component: GO:0005811 - lipid particle [Evidence IDA] [PMID 10515935]; GO_component: GO:0005811 - lipid particle [Evidence IDA] [PMID 11706015]; GO_component: GO:0005811 - lipid particle [Evidence IDA] [PMID 24868093]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016866 - intramolecular transferase activity [Evidence IEA]; GO_function: GO:0016853 - isomerase activity [Evidence IEA]; GO_function: GO:0000250 - lanosterol synthase activity [Evidence IEA]; GO_function: GO:0000250 - lanosterol synthase activity [Evidence IMP] [PMID 18842050]; GO_process: GO:0006696 - ergosterol biosynthetic process [Evidence IMP] [PMID 200835]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0006694 - steroid biosynthetic process [Evidence IEA]; lanosterol synthase ERG7 3838691 ERG7 30035296 ERG7 Sugiyamaella lignohabitans lanosterol synthase ERG7 XP_018738129.1 3836571 R 796027 CDS AWJ20_3291 30035297 complement(3838856..3840220) B 1 NC_031674.1 uncharacterized protein 3840220 30035297 AWJ20_3291 Sugiyamaella lignohabitans uncharacterized protein XP_018738130.1 3838856 R 796027 CDS AWJ20_3292 30035298 complement(3841410..3842375) B 1 NC_031674.1 glucose-inactivated glycerol proton symporter STL1 3842375 STL1 30035298 STL1 Sugiyamaella lignohabitans glucose-inactivated glycerol proton symporter STL1 XP_018738131.1 3841410 R 796027 CDS AWJ20_3293 30035299 3843988..3844968 B 1 NC_031674.1 uncharacterized protein 3844968 30035299 AWJ20_3293 Sugiyamaella lignohabitans uncharacterized protein XP_018738132.1 3843988 D 796027 CDS AWJ20_3294 30035300 complement(3845010..3845753) B 1 NC_031674.1 3-methylbutanal reductase and NADPH-dependent methylglyoxal reductase; stress induced (osmotic, ionic, oxidative, heat shock and heavy metals); regulated by the HOG pathway; restores resistance to glycolaldehyde by coupling reduction of glycolaldehyde to ethylene glycol and oxidation of NADPH to NADP+; protein abundance increases in response to DNA replication stress; methylglyoxal reductase (NADPH-dependent) is also known as D-lactaldehyde dehydrogenase; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 12206772]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 12206772]; GO_function: GO:0046568 - 3-methylbutanol:NAD(P) oxidoreductase activity [Evidence IEA]; GO_function: GO:0046568 - 3-methylbutanol:NAD(P) oxidoreductase activity [Evidence IMP] [PMID 16999827]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0050662 - coenzyme binding [Evidence IEA]; GO_function: GO:0043892 - methylglyoxal reductase (NADPH-dependent) activity [Evidence IEA]; GO_function: GO:0043892 - methylglyoxal reductase (NADPH-dependent) activity [Evidence IDA] [PMID 12722185]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_process: GO:0044237 - cellular metabolic process [Evidence IEA]; GO_process: GO:0008204 - ergosterol metabolic process [Evidence IGI,IMP] [PMID 16598690]; GO_process: GO:0030447 - filamentous growth [Evidence IMP] [PMID 16999827]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; methylglyoxal reductase (NADPH-dependent) GRE2 3845753 GRE2 30035300 GRE2 Sugiyamaella lignohabitans methylglyoxal reductase (NADPH-dependent) GRE2 XP_018738133.1 3845010 R 796027 CDS AWJ20_3295 30035301 3846818..3847921 B 1 NC_031674.1 Enolase 3847921 30035301 AWJ20_3295 Sugiyamaella lignohabitans Enolase XP_018738134.1 3846818 D 796027 CDS AWJ20_3296 30035302 complement(3847985..3849676) B 1 NC_031674.1 uncharacterized protein 3849676 30035302 AWJ20_3296 Sugiyamaella lignohabitans uncharacterized protein XP_018738135.1 3847985 R 796027 CDS AWJ20_3297 30035303 3851807..3852835 B 1 NC_031674.1 Fructose-1,6-bisphosphatase; key regulatory enzyme in the gluconeogenesis pathway, required for glucose metabolism; undergoes either proteasome-mediated or autophagy-mediated degradation depending on growth conditions; glucose starvation results in redistribution to the periplasm; interacts with Vid30p; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 12686616]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 196563]; GO_component: GO:0042597 - periplasmic space [Evidence IDA] [PMID 22833678]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0042132 - fructose 1,6-bisphosphate 1-phosphatase activity [Evidence IEA,IEA]; GO_function: GO:0042132 - fructose 1,6-bisphosphate 1-phosphatase activity [Evidence IMP] [PMID 2841162]; GO_function: GO:0042132 - fructose 1,6-bisphosphate 1-phosphatase activity [Evidence IDA] [PMID 6304022]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0042578 - phosphoric ester hydrolase activity [Evidence IEA]; GO_process: GO:0005975 - carbohydrate metabolic process [Evidence IEA,IEA]; GO_process: GO:0016311 - dephosphorylation [Evidence IEA,IEA]; GO_process: GO:0006094 - gluconeogenesis [Evidence IEA]; GO_process: GO:0006094 - gluconeogenesis [Evidence IMP] [PMID 6321183]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0072593 - reactive oxygen species metabolic process [Evidence IMP] [PMID 16199065]; fructose 1,6-bisphosphate 1-phosphatase 3852835 FBP1 30035303 FBP1 Sugiyamaella lignohabitans fructose 1,6-bisphosphate 1-phosphatase XP_018738136.1 3851807 D 796027 CDS AWJ20_3298 30035304 3853342..3854583 B 1 NC_031674.1 Protein with similarity to mammalian monocarboxylate permeases; monocarboxylate permeases are involved in transport of monocarboxylic acids across the plasma membrane but mutant is not deficient in monocarboxylate transport; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 19001347]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 23708375]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence ISS] [PMID 11536335]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0008028 - monocarboxylic acid transmembrane transporter activity [Evidence IGI,IMP] [PMID 11536335]; GO_function: GO:0005215 - transporter activity [Evidence ISS] [PMID 11536335]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence ISS] [PMID 11536335]; Mch1p 3854583 MCH1 30035304 MCH1 Sugiyamaella lignohabitans Mch1p XP_018738137.1 3853342 D 796027 CDS AWJ20_3299 30035305 complement(3854755..3856290) B 1 NC_031674.1 Protein involved in rRNA processing; required for maturation of the 35S primary transcript of pre-rRNA and for cleavage leading to mature 18S rRNA; homologous to eIF-4a, which is a DEAD box RNA-dependent ATPase with helicase activity; GO_component: GO:0005730 - nucleolus [Evidence IC] [PMID 16449634]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004004 - ATP-dependent RNA helicase activity [Evidence IDA] [PMID 23153376]; GO_function: GO:0008026 - ATP-dependent helicase activity [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0008186 - RNA-dependent ATPase activity [Evidence IDA] [PMID 18975973]; GO_function: GO:0008186 - RNA-dependent ATPase activity [Evidence IDA] [PMID 23153376]; GO_function: GO:0004386 - helicase activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0000462 - maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 16449634]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; RNA-dependent ATPase RRP3 3856290 RRP3 30035305 RRP3 Sugiyamaella lignohabitans RNA-dependent ATPase RRP3 XP_018738138.1 3854755 R 796027 CDS AWJ20_3300 30035308 3856760..3857896 B 1 NC_031674.1 Protein required for ribosomal large subunit maturation; functionally redundant with Ssf1p; member of the Brix family; SSF2 has a paralog, SSF1, that arose from the whole genome duplication; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence ISS] [PMID 11864607]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 12702244]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_function: GO:0019843 - rRNA binding [Evidence IPI] [PMID 11864606]; GO_process: GO:0000747 - conjugation with cellular fusion [Evidence IGI] [PMID 7748491]; GO_process: GO:0000027 - ribosomal large subunit assembly [Evidence IMP] [PMID 11864606]; GO_process: GO:0000027 - ribosomal large subunit assembly [Evidence ISS] [PMID 11864607]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; Ssf2p 3857896 SSF2 30035308 SSF2 Sugiyamaella lignohabitans Ssf2p XP_018738139.1 3856760 D 796027 CDS AWJ20_3301 30035309 3858494..3859228 B 1 NC_031674.1 RING-type ubiquitin ligase of the endosomal and vacuolar membranes; binds phosphatidylinositol(3)-phosphate; contains a FYVE finger domain; GO_component: GO:0005768 - endosome [Evidence IEA]; GO_component: GO:0010008 - endosome membrane [Evidence IEA]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 11526110]; GO_component: GO:0005770 - late endosome [Evidence IDA] [PMID 11526110]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA,IEA]; GO_function: GO:0032266 - phosphatidylinositol-3-phosphate binding [Evidence IDA] [PMID 9702203]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence IDA] [PMID 11526110]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0016567 - protein ubiquitination [Evidence IEA]; GO_process: GO:0016567 - protein ubiquitination [Evidence IDA] [PMID 11526110]; phosphatidylinositol-3-phosphate-binding ubiquitin-protein ligase 3859228 PIB1 30035309 PIB1 Sugiyamaella lignohabitans phosphatidylinositol-3-phosphate-binding ubiquitin-protein ligase XP_018738140.1 3858494 D 796027 CDS AWJ20_3302 30035310 3860656..3862815 B 1 NC_031674.1 Usp (universal stress protein) family protein, implicated in meiotic chromosome segregation 3862815 30035310 AWJ20_3302 Sugiyamaella lignohabitans Usp (universal stress protein) family protein, implicated in meiotic chromosome segregation XP_018738141.1 3860656 D 796027 CDS AWJ20_3303 30035311 complement(3863668..3864759) B 1 NC_031674.1 GDP-mannose pyrophosphorylase (mannose-1-phosphate guanyltransferase); synthesizes GDP-mannose from GTP and mannose-1-phosphate in cell wall biosynthesis; required for normal cell wall structure; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0005525 - GTP binding [Evidence IEA]; GO_function: GO:0004475 - mannose-1-phosphate guanylyltransferase activity [Evidence IEA]; GO_function: GO:0004475 - mannose-1-phosphate guanylyltransferase activity [Evidence IDA,IMP] [PMID 9195935]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016779 - nucleotidyltransferase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA,IEA]; GO_process: GO:0009298 - GDP-mannose biosynthetic process [Evidence IEA]; GO_process: GO:0009298 - GDP-mannose biosynthetic process [Evidence IDA,IMP] [PMID 9195935]; GO_process: GO:0009058 - biosynthetic process [Evidence IEA]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0000032 - cell wall mannoprotein biosynthetic process [Evidence IMP] [PMID 11055399]; GO_process: GO:0006486 - protein glycosylation [Evidence IMP] [PMID 9195935]; mannose-1-phosphate guanylyltransferase 3864759 PSA1 30035311 PSA1 Sugiyamaella lignohabitans mannose-1-phosphate guanylyltransferase XP_018738142.1 3863668 R 796027 CDS AWJ20_3304 30035312 complement(3868570..3870183) B 1 NC_031674.1 Gamma subunit of the translation initiation factor eIF2; involved in the identification of the start codon; binds GTP when forming the ternary complex with GTP and tRNAi-Met; mutations in human ortholog cause X-linked intellectual disability (XLID); GO_component: GO:0016282 - eukaryotic 43S preinitiation complex [Evidence IDA] [PMID 12008673]; GO_component: GO:0033290 - eukaryotic 48S preinitiation complex [Evidence IDA] [PMID 17242201]; GO_component: GO:0005850 - eukaryotic translation initiation factor 2 complex [Evidence IMP] [PMID 8417348]; GO_component: GO:0043614 - multi-eIF complex [Evidence IDA] [PMID 11018020]; GO_component: GO:0043614 - multi-eIF complex [Evidence IDA] [PMID 15838098]; GO_function: GO:0005525 - GTP binding [Evidence IEA,IEA]; GO_function: GO:0005525 - GTP binding [Evidence IMP] [PMID 8947054]; GO_function: GO:0003924 - GTPase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0005515 - protein binding [Evidence IPI] [PMID 22683627]; GO_function: GO:0000049 - tRNA binding [Evidence IMP] [PMID 8947054]; GO_function: GO:0003743 - translation initiation factor activity [Evidence IEA]; GO_function: GO:0003743 - translation initiation factor activity [Evidence IMP] [PMID 23063529]; GO_function: GO:0031369 - translation initiation factor binding [Evidence IDA] [PMID 22683627]; GO_process: GO:0006184 - GTP catabolic process [Evidence IEA]; GO_process: GO:0001731 - formation of translation preinitiation complex [Evidence IDA] [PMID 12008673]; GO_process: GO:0045903 - positive regulation of translational fidelity [Evidence IMP] [PMID 9308967]; GO_process: GO:0006412 - translation [Evidence IEA]; GO_process: GO:0006413 - translational initiation [Evidence IEA]; GO_process: GO:0006413 - translational initiation [Evidence IMP] [PMID 23063529]; translation initiation factor eIF2 subunit gamma 3870183 GCD11 30035312 GCD11 Sugiyamaella lignohabitans translation initiation factor eIF2 subunit gamma XP_018738143.1 3868570 R 796027 CDS AWJ20_3305 30035313 complement(3870580..3873195) B 1 NC_031674.1 leucine-responsive transcriptional regulator LEU3 3873195 LEU3 30035313 LEU3 Sugiyamaella lignohabitans leucine-responsive transcriptional regulator LEU3 XP_018738144.1 3870580 R 796027 CDS AWJ20_3306 30035314 3873697..3875067 B 1 NC_031674.1 uncharacterized protein 3875067 30035314 AWJ20_3306 Sugiyamaella lignohabitans uncharacterized protein XP_018738145.1 3873697 D 796027 CDS AWJ20_3307 30035315 complement(3877117..3877932) B 1 NC_031674.1 Subunit of both RNase MRP and nuclear RNase P; RNase MRP cleaves pre-rRNA, while nuclear RNase P cleaves tRNA precursors to generate mature 5' ends and facilitates turnover of nuclear RNAs; binds to the RPR1 RNA subunit in RNase P; GO_component: GO:0005655 - nucleolar ribonuclease P complex [Evidence IEA]; GO_component: GO:0005655 - nucleolar ribonuclease P complex [Evidence IDA] [PMID 9620854]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0000172 - ribonuclease MRP complex [Evidence IEA]; GO_component: GO:0000172 - ribonuclease MRP complex [Evidence IPI] [PMID 17881380]; GO_component: GO:0000172 - ribonuclease MRP complex [Evidence IDA] [PMID 9620854]; GO_component: GO:0030677 - ribonuclease P complex [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IDA] [PMID 23700311]; GO_function: GO:0042134 - rRNA primary transcript binding [Evidence IDA] [PMID 17881380]; GO_function: GO:0000171 - ribonuclease MRP activity [Evidence IMP] [PMID 9085845]; GO_function: GO:0004526 - ribonuclease P activity [Evidence IMP] [PMID 9085845]; GO_function: GO:0004540 - ribonuclease activity [Evidence IEA]; GO_process: GO:0090501 - RNA phosphodiester bond hydrolysis [Evidence IEA]; GO_process: GO:0034965 - intronic box C/D snoRNA processing [Evidence IDA] [PMID 18713869]; GO_process: GO:0006379 - mRNA cleavage [Evidence IEA]; GO_process: GO:0006379 - mRNA cleavage [Evidence IDA] [PMID 14729943]; GO_process: GO:0006364 - rRNA processing [Evidence IEA,IEA]; GO_process: GO:0006364 - rRNA processing [Evidence IMP] [PMID 9085845]; GO_process: GO:0008033 - tRNA processing [Evidence IEA,IEA]; GO_process: GO:0008033 - tRNA processing [Evidence IMP] [PMID 9085845]; Pop4p 3877932 POP4 30035315 POP4 Sugiyamaella lignohabitans Pop4p XP_018738146.1 3877117 R 796027 CDS AWJ20_3308 30035316 3878407..3879282 B 1 NC_031674.1 Putative lipoate-protein ligase; required along with Lip2 and Lip5 for lipoylation of Lat1p and Kgd2p; similar to E. coli LplA; null mutant displays reduced frequency of mitochondrial genome loss; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 19570983]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0016979 - lipoate-protein ligase activity [Evidence ISA] [PMID 19570983]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA,IEA]; GO_process: GO:0006464 - cellular protein modification process [Evidence IEA]; GO_process: GO:0009249 - protein lipoylation [Evidence IEA]; GO_process: GO:0009249 - protein lipoylation [Evidence IMP] [PMID 19570983]; putative lipoate--protein ligase 3879282 AIM22 30035316 AIM22 Sugiyamaella lignohabitans putative lipoate--protein ligase XP_018738147.1 3878407 D 796027 CDS AWJ20_3309 30035317 complement(3879416..3880345) B 1 NC_031674.1 S-adenosylmethionine-dependent methyltransferase; methylates translation elongation factors EF2 (Eft1p and Eft2p) and EF3A (Yef3p); belongs to the seven beta-strand family; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm; predicted to be involved in ribosome biogenesis; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity [Evidence IDA] [PMID 21858014]; GO_function: GO:0016279 - protein-lysine N-methyltransferase activity [Evidence IMP] [PMID 22522802]; GO_process: GO:0018022 - peptidyl-lysine methylation [Evidence IMP] [PMID 22522802]; Efm2p 3880345 EFM2 30035317 EFM2 Sugiyamaella lignohabitans Efm2p XP_018738148.1 3879416 R 796027 CDS AWJ20_3310 30035319 complement(3880610..3882349) B 1 NC_031674.1 Outer mitochondrial carnitine acetyltransferase; minor ethanol-inducible enzyme involved in transport of activated acyl groups from the cytoplasm into the mitochondrial matrix; phosphorylated; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 11914276]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 18427809]; GO_function: GO:0004092 - carnitine O-acetyltransferase activity [Evidence IEA]; GO_function: GO:0004092 - carnitine O-acetyltransferase activity [Evidence ISS] [PMID 11329169]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016746 - transferase activity, transferring acyl groups [Evidence IEA,IEA]; GO_process: GO:0006066 - alcohol metabolic process [Evidence IGI] [PMID 11329169]; GO_process: GO:0009437 - carnitine metabolic process [Evidence IMP] [PMID 11329169]; GO_process: GO:0006631 - fatty acid metabolic process [Evidence IEA]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; carnitine O-acetyltransferase YAT1 3882349 YAT1 30035319 YAT1 Sugiyamaella lignohabitans carnitine O-acetyltransferase YAT1 XP_018738149.1 3880610 R 796027 CDS AWJ20_3311 30035320 complement(3884501..3885373) B 1 NC_031674.1 3-hydroxyisobutyryl-CoA hydrolase; member of a family of enoyl-CoA hydratase/isomerases; non-tagged protein is detected in highly purified mitochondria in high-throughput studies; phosphorylated; mutation affects fluid-phase endocytosis; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 17054397]; GO_function: GO:0003860 - 3-hydroxyisobutyryl-CoA hydrolase activity [Evidence IEA]; GO_function: GO:0003860 - 3-hydroxyisobutyryl-CoA hydrolase activity [Evidence IDA,ISS] [PMID 12697341]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0009083 - branched-chain amino acid catabolic process [Evidence IEA]; GO_process: GO:0006635 - fatty acid beta-oxidation [Evidence IMP] [PMID 12697341]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0006574 - valine catabolic process [Evidence IEA]; Ehd3p 3885373 EHD3 30035320 EHD3 Sugiyamaella lignohabitans Ehd3p XP_018738150.1 3884501 R 796027 CDS AWJ20_3312 30035321 3885976..3886644 B 1 NC_031674.1 Protein component of the small (40S) ribosomal subunit; least basic of non-acidic ribosomal proteins; phosphorylated in vivo; essential for viability; homologous to mammalian ribosomal protein S5 and bacterial S7; GO_component: GO:0030686 - 90S preribosome [Evidence IDA] [PMID 12150911]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0022627 - cytosolic small ribosomal subunit [Evidence IDA] [PMID 385049]; GO_component: GO:0022627 - cytosolic small ribosomal subunit [Evidence IDA] [PMID 6814480]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA]; GO_component: GO:0015935 - small ribosomal subunit [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IDA] [PMID 6814480]; GO_process: GO:0002181 - cytoplasmic translation [Evidence IC] [PMID 385049]; GO_process: GO:0002181 - cytoplasmic translation [Evidence IC] [PMID 6814480]; GO_process: GO:0006407 - rRNA export from nucleus [Evidence IMP] [PMID 16246728]; GO_process: GO:0006450 - regulation of translational fidelity [Evidence ISA] [PMID 17901157]; GO_process: GO:0006412 - translation [Evidence IEA]; ribosomal 40S subunit protein S5 3886644 RPS5 30035321 RPS5 Sugiyamaella lignohabitans ribosomal 40S subunit protein S5 XP_018738151.1 3885976 D 796027 CDS AWJ20_3313 30035322 complement(3887896..3890520) B 1 NC_031674.1 Alpha arrestin; controls nutrient-mediated intracellular sorting of permease Gap1p; interacts with AP-1 subunit Apl4p; phosphorylated by Npr1p and also by cyclin-CDK complex Pcl7p-Pho85p; promotes endocytosis of plasma membrane proteins; ALY2 has a paralog, ALY1, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005769 - early endosome [Evidence IDA] [PMID 20739461]; GO_component: GO:0005770 - late endosome [Evidence IDA] [PMID 20739461]; GO_function: GO:0030674 - protein binding, bridging [Evidence IPI] [PMID 20956561]; GO_function: GO:0031625 - ubiquitin protein ligase binding [Evidence IPI] [PMID 18976803]; GO_process: GO:2000397 - positive regulation of ubiquitin-dependent endocytosis [Evidence IMP] [PMID 20956561]; GO_process: GO:0032386 - regulation of intracellular transport [Evidence IMP] [PMID 20739461]; GO_process: GO:0070086 - ubiquitin-dependent endocytosis [Evidence ISA] [PMID 18976803]; Aly2p 3890520 ALY2 30035322 ALY2 Sugiyamaella lignohabitans Aly2p XP_018738152.1 3887896 R 796027 CDS AWJ20_3314 30035323 3892647..3893411 B 1 NC_031674.1 uncharacterized protein 3893411 30035323 AWJ20_3314 Sugiyamaella lignohabitans uncharacterized protein XP_018738153.1 3892647 D 796027 CDS AWJ20_3315 30035324 complement(3893752..3895533) B 1 NC_031674.1 Major isozyme of methylenetetrahydrofolate reductase; catalyzes the reduction of 5,10-methylenetetrahydrofolate to 5-methyltetrahydrofolate in the methionine biosynthesis pathway; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0004489 - methylenetetrahydrofolate reductase (NAD(P)H) activity [Evidence IEA,IEA]; GO_function: GO:0004489 - methylenetetrahydrofolate reductase (NAD(P)H) activity [Evidence IDA,ISS] [PMID 10600168]; GO_function: GO:0004489 - methylenetetrahydrofolate reductase (NAD(P)H) activity [Evidence ISS] [PMID 8896269]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_process: GO:0009086 - methionine biosynthetic process [Evidence IMP,ISS] [PMID 10029993]; GO_process: GO:0009086 - methionine biosynthetic process [Evidence IMP,ISS] [PMID 10600168]; GO_process: GO:0006555 - methionine metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0035999 - tetrahydrofolate interconversion [Evidence IEA]; methylenetetrahydrofolate reductase (NAD(P)H) MET13 3895533 MET13 30035324 MET13 Sugiyamaella lignohabitans methylenetetrahydrofolate reductase (NAD(P)H) MET13 XP_018738154.1 3893752 R 796027 CDS AWJ20_3316 30035325 complement(3896473..3898455) B 1 NC_031674.1 uncharacterized protein 3898455 30035325 AWJ20_3316 Sugiyamaella lignohabitans uncharacterized protein XP_018738155.1 3896473 R 796027 CDS AWJ20_3317 30035326 3901159..3902388 B 1 NC_031674.1 uncharacterized protein 3902388 30035326 AWJ20_3317 Sugiyamaella lignohabitans uncharacterized protein XP_018738156.1 3901159 D 796027 CDS AWJ20_3318 30035327 complement(3904982..3908659) B 1 NC_031674.1 Subunit of ATP-dependent Isw2p-Itc1p chromatin remodeling complex; required for repression of a-specific genes, repression of early meiotic genes during mitotic growth, and repression of INO1; similar to mammalian Acf1p, the regulatory subunit of the mammalian ATP-utilizing chromatin assembly and modifying factor (ACF) complex; ITC1 has a paralog, YPL216W, that arose from the whole genome duplication; GO_component: GO:0008623 - CHRAC [Evidence IPI] [PMID 14673157]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0016568 - chromatin modification [Evidence IEA]; GO_process: GO:0006338 - chromatin remodeling [Evidence TAS] [PMID 12370299]; GO_process: GO:0006348 - chromatin silencing at telomere [Evidence IMP] [PMID 14673157]; GO_process: GO:0046020 - negative regulation of transcription from RNA polymerase II promoter by pheromones [Evidence IMP] [PMID 12624196]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Itc1p 3908659 ITC1 30035327 ITC1 Sugiyamaella lignohabitans Itc1p XP_018738157.1 3904982 R 796027 CDS AWJ20_3319 30035328 3910614..3913898 B 1 NC_031674.1 GTPase required for ribosomal subunit synthesis and rRNA processing; required for synthesis of 40S ribosomal subunits and for processing the 35S pre-rRNA at sites A0, A1, and A2; interacts with Rcl1p, which stimulates its GTPase and U3 snoRNA binding activities; has similarity to Tsr1p; GO_component: GO:0030686 - 90S preribosome [Evidence IDA] [PMID 12150911]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 10684247]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 10684247]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 10684247]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0005525 - GTP binding [Evidence IEA]; GO_function: GO:0005525 - GTP binding [Evidence IDA,IMP] [PMID 16307926]; GO_function: GO:0003924 - GTPase activity [Evidence IEA]; GO_function: GO:0003924 - GTPase activity [Evidence IDA,IMP] [PMID 16307926]; GO_function: GO:0034511 - U3 snoRNA binding [Evidence IDA] [PMID 16307926]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006184 - GTP catabolic process [Evidence IEA]; GO_process: GO:0006364 - rRNA processing [Evidence IDA] [PMID 11565749]; GO_process: GO:0042255 - ribosome assembly [Evidence IDA] [PMID 11565749]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA,IEA]; GTPase BMS1 3913898 BMS1 30035328 BMS1 Sugiyamaella lignohabitans GTPase BMS1 XP_018738158.1 3910614 D 796027 CDS AWJ20_3320 30035330 complement(3913976..3915856) B 1 NC_031674.1 Subunit a of the vacuolar-ATPase V0 domain; one of two isoforms (Stv1p and Vph1p); Stv1p is located in V-ATPase complexes of the Golgi and endosomes while Vph1p is located in V-ATPase complexes of the vacuole; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0005794 - Golgi apparatus [Evidence IDA] [PMID 11592965]; GO_component: GO:0005794 - Golgi apparatus [Evidence IDA] [PMID 11948198]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA]; GO_component: GO:0005768 - endosome [Evidence IEA]; GO_component: GO:0010008 - endosome membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0005770 - late endosome [Evidence IDA] [PMID 11592965]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0033179 - proton-transporting V-type ATPase, V0 domain [Evidence IEA]; GO_component: GO:0000220 - vacuolar proton-transporting V-type ATPase, V0 domain [Evidence IEA]; GO_component: GO:0000220 - vacuolar proton-transporting V-type ATPase, V0 domain [Evidence IDA,ISS] [PMID 7514599]; GO_function: GO:0015078 - hydrogen ion transmembrane transporter activity [Evidence IEA]; GO_function: GO:0046961 - proton-transporting ATPase activity, rotational mechanism [Evidence IGI,ISS] [PMID 7514599]; GO_process: GO:0015991 - ATP hydrolysis coupled proton transport [Evidence IEA]; GO_process: GO:0006811 - ion transport [Evidence IEA]; GO_process: GO:0015992 - proton transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0007035 - vacuolar acidification [Evidence IEP,IGI,IMP,ISS] [PMID 11278748]; GO_process: GO:0007035 - vacuolar acidification [Evidence IGI] [PMID 7514599]; H(+)-transporting V0 sector ATPase subunit a 3915856 VPH1 30035330 VPH1 Sugiyamaella lignohabitans H(+)-transporting V0 sector ATPase subunit a XP_018738159.1 3913976 R 796027 CDS AWJ20_3322 30035332 3918053..3920914 B 1 NC_031674.1 Protein that binds Sin3p in a two-hybrid assay; STB6 has a paralog, STB2, that arose from the whole genome duplication; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; Stb6p 3920914 STB6 30035332 STB6 Sugiyamaella lignohabitans Stb6p XP_018738160.1 3918053 D 796027 CDS AWJ20_3323 30035333 complement(3920967..3923399) B 1 NC_031674.1 Putative histone acetylase with a role in transcriptional silencing; sequence-specific activator of histone genes, binds specifically and cooperatively to pairs of UAS elements in core histone promoters, functions at or near the TATA box; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0008080 - N-acetyltransferase activity [Evidence IEA]; GO_function: GO:0004402 - histone acetyltransferase activity [Evidence ISS] [PMID 9175471]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 16199888]; GO_process: GO:0006281 - DNA repair [Evidence IMP] [PMID 17078097]; GO_process: GO:0000183 - chromatin silencing at rDNA [Evidence IMP] [PMID 21057056]; GO_process: GO:0030466 - chromatin silencing at silent mating-type cassette [Evidence IGI] [PMID 21057056]; GO_process: GO:0006348 - chromatin silencing at telomere [Evidence IMP] [PMID 21057056]; GO_process: GO:0016573 - histone acetylation [Evidence IMP] [PMID 12192040]; GO_process: GO:0000122 - negative regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 17526727]; Spt10p 3923399 SPT10 30035333 SPT10 Sugiyamaella lignohabitans Spt10p XP_018738161.1 3920967 R 796027 CDS AWJ20_3324 30035334 complement(3924286..3926571) B 1 NC_031674.1 Component of the kinetochore-associated Ndc80 complex; conserved coiled-coil protein involved in chromosome segregation, spindle checkpoint activity, and kinetochore assembly and clustering; evolutionarily conserved; other members include Ndc80p, Nuf2p, Scp24p, and Spc25p; modified by sumoylation; GO_component: GO:0031262 - Ndc80 complex [Evidence IDA,IPI] [PMID 11179222]; GO_component: GO:0031262 - Ndc80 complex [Evidence IDA] [PMID 11266451]; GO_component: GO:0005694 - chromosome [Evidence IEA]; GO_component: GO:0000775 - chromosome, centromeric region [Evidence IEA]; GO_component: GO:0000777 - condensed chromosome kinetochore [Evidence IEA]; GO_component: GO:0000778 - condensed nuclear chromosome kinetochore [Evidence IMP,IPI] [PMID 11179222]; GO_component: GO:0000778 - condensed nuclear chromosome kinetochore [Evidence IDA] [PMID 11511347]; GO_component: GO:0000780 - condensed nuclear chromosome, centromeric region [Evidence IDA,IGI,IPI] [PMID 11266451]; GO_component: GO:0000776 - kinetochore [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0005200 - structural constituent of cytoskeleton [Evidence IPI] [PMID 9585415]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0007059 - chromosome segregation [Evidence IGI,IMP] [PMID 11266451]; GO_process: GO:0007020 - microtubule nucleation [Evidence IPI] [PMID 9153752]; GO_process: GO:0007067 - mitotic nuclear division [Evidence IEA]; GO_process: GO:0034501 - protein localization to kinetochore [Evidence IMP] [PMID 19893618]; Ndc80p 3926571 NDC80 30035334 NDC80 Sugiyamaella lignohabitans Ndc80p XP_018738162.1 3924286 R 796027 CDS AWJ20_3325 30035335 3927177..3928142 B 1 NC_031674.1 Pantothenate synthase; also known as pantoate-beta-alanine ligase, required for pantothenic acid biosynthesis, deletion causes pantothenic acid auxotrophy, homologous to E. coli panC; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0004592 - pantoate-beta-alanine ligase activity [Evidence IEA,IEA]; GO_function: GO:0004592 - pantoate-beta-alanine ligase activity [Evidence IDA,ISS] [PMID 10417331]; GO_process: GO:0015940 - pantothenate biosynthetic process [Evidence IEA,IEA,IEA]; GO_process: GO:0015940 - pantothenate biosynthetic process [Evidence IMP] [PMID 11154694]; pantoate--beta-alanine ligase PAN6 3928142 PAN6 30035335 PAN6 Sugiyamaella lignohabitans pantoate--beta-alanine ligase PAN6 XP_018738163.1 3927177 D 796027 CDS AWJ20_3326 30035336 complement(3928229..3931675) B 1 NC_031674.1 DEAH-box RNA helicase involved in second catalytic step of splicing and in exon ligation; exhibits ATP-dependent RNA unwinding activity; mediates the release of Yju2p and Cwc25p in the second step; in the absence of ATP, stabilizes the binding of Cwc25p to the spliceosome in the first catalytic step; GO_component: GO:0071007 - U2-type catalytic step 2 spliceosome [Evidence IDA] [PMID 1825134]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0008026 - ATP-dependent helicase activity [Evidence IEA]; GO_function: GO:0008186 - RNA-dependent ATPase activity [Evidence IDA] [PMID 1825134]; GO_function: GO:0004386 - helicase activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0000386 - second spliceosomal transesterification activity [Evidence IMP] [PMID 1825134]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0000378 - RNA exon ligation [Evidence IDA] [PMID 23685439]; GO_process: GO:0008380 - RNA splicing [Evidence IEA]; GO_process: GO:0000350 - generation of catalytic spliceosome for second transesterification step [Evidence IMP] [PMID 16103217]; GO_process: GO:0000350 - generation of catalytic spliceosome for second transesterification step [Evidence IMP] [PMID 1825134]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; DEAH-box RNA helicase PRP16 3931675 PRP16 30035336 PRP16 Sugiyamaella lignohabitans DEAH-box RNA helicase PRP16 XP_018738164.1 3928229 R 796027 CDS AWJ20_3327 30035337 3931878..3932465 B 1 NC_031674.1 Mitochondrial ribosomal protein of the large subunit; GO_component: GO:0005762 - mitochondrial large ribosomal subunit [Evidence IPI] [PMID 12392552]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IPI] [PMID 12392552]; GO_process: GO:0032543 - mitochondrial translation [Evidence IC] [PMID 12392552]; mitochondrial 54S ribosomal protein YmL20 3932465 MRPL20 30035337 MRPL20 Sugiyamaella lignohabitans mitochondrial 54S ribosomal protein YmL20 XP_018738165.1 3931878 D 796027 CDS AWJ20_3328 30035338 complement(3932624..3933298) B 1 NC_031674.1 uncharacterized protein 3933298 30035338 AWJ20_3328 Sugiyamaella lignohabitans uncharacterized protein XP_018738166.1 3932624 R 796027 CDS AWJ20_3329 30035339 3934513..3936177 B 1 NC_031674.1 GTPase with similarity to translation release factors; together with binding partner Dom34p, facilitates ribosomal subunit dissociation and peptidyl-tRNA release when translation is stalled, particularly in 3' UTRs; genetically implicated in mRNA no-go decay; HBS1 has a paralog, SKI7, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0005525 - GTP binding [Evidence IEA,IEA]; GO_function: GO:0003924 - GTPase activity [Evidence IEA]; GO_function: GO:0003924 - GTPase activity [Evidence IDA] [PMID 20947765]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0043022 - ribosome binding [Evidence IDA] [PMID 21623367]; GO_function: GO:0003746 - translation elongation factor activity [Evidence IEA]; GO_process: GO:0006184 - GTP catabolic process [Evidence IEA]; GO_process: GO:0070651 - nonfunctional rRNA decay [Evidence IMP] [PMID 19481524]; GO_process: GO:0070966 - nuclear-transcribed mRNA catabolic process, no-go decay [Evidence IGI] [PMID 16554824]; GO_process: GO:0045727 - positive regulation of translation [Evidence IMP] [PMID 24424461]; GO_process: GO:0006417 - regulation of translation [Evidence IEA]; GO_process: GO:0032790 - ribosome disassembly [Evidence IDA] [PMID 20947765]; GO_process: GO:0006412 - translation [Evidence IEA]; GO_process: GO:0006414 - translational elongation [Evidence IEA]; ribosome dissociation factor GTPase HBS1 3936177 HBS1 30035339 HBS1 Sugiyamaella lignohabitans ribosome dissociation factor GTPase HBS1 XP_018738167.1 3934513 D 796027 CDS AWJ20_3330 30035341 complement(3936267..3937238) B 1 NC_031674.1 uncharacterized protein 3937238 30035341 AWJ20_3330 Sugiyamaella lignohabitans uncharacterized protein XP_018738168.1 3936267 R 796027 CDS AWJ20_3331 30035342 3937405..3939222 B 1 NC_031674.1 uncharacterized protein 3939222 30035342 AWJ20_3331 Sugiyamaella lignohabitans uncharacterized protein XP_018738169.1 3937405 D 796027 CDS AWJ20_3332 30035343 complement(3940846..3941886) B 1 NC_031674.1 Chaperone and import receptor for newly-synthesized class I PMPs; binds peroxisomal membrane proteins (PMPs) in the cytoplasm and delivers them to the peroxisome for subsequent insertion into the peroxisomal membrane; interacts with Myo2p and contributes to peroxisome partitioning; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 9418908]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 16009135]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005778 - peroxisomal membrane [Evidence IEA]; GO_component: GO:0005778 - peroxisomal membrane [Evidence IDA] [PMID 9418908]; GO_component: GO:0005777 - peroxisome [Evidence IEA,IEA]; GO_function: GO:0033328 - peroxisome membrane targeting sequence binding [Evidence IPI] [PMID 16679311]; GO_function: GO:0005515 - protein binding [Evidence IPI] [PMID 16679311]; GO_function: GO:0005515 - protein binding [Evidence IPI] [PMID 9418908]; GO_process: GO:0032581 - ER-dependent peroxisome organization [Evidence IMP] [PMID 20427571]; GO_process: GO:0045033 - peroxisome inheritance [Evidence IPI] [PMID 22486971]; GO_process: GO:0007031 - peroxisome organization [Evidence IEA]; GO_process: GO:0032527 - protein exit from endoplasmic reticulum [Evidence IMP] [PMID 16009135]; GO_process: GO:0045046 - protein import into peroxisome membrane [Evidence IMP] [PMID 10637226]; GO_process: GO:0050821 - protein stabilization [Evidence IPI] [PMID 16679311]; Pex19p 3941886 PEX19 30035343 PEX19 Sugiyamaella lignohabitans Pex19p XP_018738170.1 3940846 R 796027 CDS AWJ20_3333 30035344 complement(3943652..3945385) B 1 NC_031674.1 Polyamine transporter of the major facilitator superfamily; member of the 12-spanner drug:H(+) antiporter DHA1 family; specific for spermine; localizes to the plasma membrane; transcription of TPO2 is regulated by Haa1p; TPO2 has a paralog, TPO3, that arose from the whole genome duplication; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IMP] [PMID 11171066]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 12562762]; GO_function: GO:0015297 - antiporter activity [Evidence IEA]; GO_function: GO:0000297 - spermine transmembrane transporter activity [Evidence IMP] [PMID 11171066]; GO_process: GO:0000296 - spermine transport [Evidence IMP] [PMID 11171066]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Tpo2p 3945385 TPO2 30035344 TPO2 Sugiyamaella lignohabitans Tpo2p XP_018738171.1 3943652 R 796027 CDS AWJ20_3334 30035345 3944475..3944738 B 1 NC_031674.1 uncharacterized protein 3944738 30035345 AWJ20_3334 Sugiyamaella lignohabitans uncharacterized protein XP_018738172.1 3944475 D 796027 CDS AWJ20_3335 30035346 complement(3947194..3948147) B 1 NC_031674.1 Mitochondrial ribosomal protein of the small subunit; GO_component: GO:0005763 - mitochondrial small ribosomal subunit [Evidence IPI] [PMID 11278769]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA,IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IPI] [PMID 11278769]; GO_process: GO:0032543 - mitochondrial translation [Evidence IC] [PMID 11278769]; GO_process: GO:0006412 - translation [Evidence IEA]; mitochondrial 37S ribosomal protein MRPS5 3948147 MRPS5 30035346 MRPS5 Sugiyamaella lignohabitans mitochondrial 37S ribosomal protein MRPS5 XP_018738173.1 3947194 R 796027 CDS AWJ20_3336 30035347 complement(3949331..3950044) B 1 NC_031674.1 uncharacterized protein 3950044 30035347 AWJ20_3336 Sugiyamaella lignohabitans uncharacterized protein XP_018738174.1 3949331 R 796027 CDS AWJ20_3337 30035348 complement(3950622..3951482) B 1 NC_031674.1 TFIIE small subunit; involved in RNA polymerase II transcription initiation; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005673 - transcription factor TFIIE complex [Evidence IEA]; GO_component: GO:0005673 - transcription factor TFIIE complex [Evidence IDA] [PMID 1429681]; GO_component: GO:0005673 - transcription factor TFIIE complex [Evidence IDA] [PMID 7961670]; GO_component: GO:0005673 - transcription factor TFIIE complex [Evidence IPI] [PMID 9188494]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0000993 - RNA polymerase II core binding [Evidence IDA] [PMID 8702741]; GO_function: GO:0001097 - TFIIH-class transcription factor binding [Evidence IDA] [PMID 8702741]; GO_function: GO:0003697 - single-stranded DNA binding [Evidence IDA] [PMID 9271406]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IDA] [PMID 1331084]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IDA] [PMID 1429681]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IDA] [PMID 7961670]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IGI] [PMID 9405484]; GO_process: GO:0006367 - transcription initiation from RNA polymerase II promoter [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Tfa2p 3951482 TFA2 30035348 TFA2 Sugiyamaella lignohabitans Tfa2p XP_018738175.1 3950622 R 796027 CDS AWJ20_3338 30035349 3954789..3958928 B 1 NC_031674.1 Transporter of the ATP-binding cassette (ABC) family; involved in bile acid transport; negative regulator of vacuole fusion; regulates release of lumenal Ca2+ stores; similar to mammalian bile transporters; YBT1 has a paralog, VMR1, that arose from the whole genome duplication; GO_component: GO:0000324 - fungal-type vacuole [Evidence IDA] [PMID 9182565]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 9182565]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016887 - ATPase activity [Evidence IEA]; GO_function: GO:0042626 - ATPase activity, coupled to transmembrane movement of substances [Evidence IEA]; GO_function: GO:0015432 - bile acid-exporting ATPase activity [Evidence IMP] [PMID 9182565]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0015721 - bile acid and bile salt transport [Evidence IMP] [PMID 9182565]; GO_process: GO:0006816 - calcium ion transport [Evidence IEA]; GO_process: GO:0006811 - ion transport [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; bile acid-transporting ATPase YBT1 3958928 YBT1 30035349 YBT1 Sugiyamaella lignohabitans bile acid-transporting ATPase YBT1 XP_018738176.1 3954789 D 796027 CDS AWJ20_3339 30035350 complement(3959043..3962012) B 1 NC_031674.1 Subunit of the cohesin complex; which is required for sister chromatid cohesion during mitosis and meiosis and interacts with centromeres and chromosome arms; relocalizes to the cytosol in response to hypoxia; essential for viability; GO_component: GO:0005694 - chromosome [Evidence IEA,IEA]; GO_component: GO:0000775 - chromosome, centromeric region [Evidence IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 22932476]; GO_component: GO:0034990 - nuclear mitotic cohesin complex [Evidence IDA] [PMID 22912589]; GO_component: GO:0034990 - nuclear mitotic cohesin complex [Evidence IDA] [PMID 9990856]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 10028182]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22932476]; GO_function: GO:0003682 - chromatin binding [Evidence IDA] [PMID 9990856]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0007059 - chromosome segregation [Evidence IEA]; GO_process: GO:0000755 - cytogamy [Evidence IMP] [PMID 10028182]; GO_process: GO:0031505 - fungal-type cell wall organization [Evidence IMP] [PMID 17229992]; GO_process: GO:0007067 - mitotic nuclear division [Evidence IEA]; GO_process: GO:0007064 - mitotic sister chromatid cohesion [Evidence IMP] [PMID 9990856]; GO_process: GO:0009847 - spore germination [Evidence IMP] [PMID 10028182]; Irr1p 3962012 IRR1 30035350 IRR1 Sugiyamaella lignohabitans Irr1p XP_018738177.1 3959043 R 796027 CDS AWJ20_3340 30035352 complement(3963941..3966637) B 1 NC_031674.1 Component of the cleavage and polyadenylation factor I (CF I); CF 1, composed of the CF 1A complex (Rna14p, Rna15p, Clp1p, Pcf11p) and Hrp1, is involved in cleavage and polyadenylation of mRNA 3' ends; bridges interaction between Rna15p and Hrp1p in the CF I complex; mutant displays reduced transcription elongation in the G-less-based run-on (GLRO) assay; required for gene looping; relocalizes to the cytosol in response to hypoxia; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 22932476]; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0005849 - mRNA cleavage factor complex [Evidence IPI] [PMID 11344258]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 10660071]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 10660071]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22932476]; GO_function: GO:0003723 - RNA binding [Evidence IDA] [PMID 15215336]; GO_function: GO:0046982 - protein heterodimerization activity [Evidence IPI] [PMID 15215336]; GO_process: GO:0006396 - RNA processing [Evidence IEA]; GO_process: GO:0006379 - mRNA cleavage [Evidence IDA] [PMID 11344258]; GO_process: GO:0006378 - mRNA polyadenylation [Evidence IDA] [PMID 11344258]; GO_process: GO:0006397 - mRNA processing [Evidence IEA,IEA]; Rna14p 3966637 RNA14 30035352 RNA14 Sugiyamaella lignohabitans Rna14p XP_018738178.1 3963941 R 796027 CDS AWJ20_3341 30035353 3966820..3967728 B 1 NC_031674.1 SAM complex subunit SAM37 3967728 SAM37 30035353 SAM37 Sugiyamaella lignohabitans SAM complex subunit SAM37 XP_018738179.1 3966820 D 796027 CDS AWJ20_3342 30035354 complement(3967873..3968268) B 1 NC_031674.1 uncharacterized protein 3968268 30035354 AWJ20_3342 Sugiyamaella lignohabitans uncharacterized protein XP_018738180.1 3967873 R 796027 CDS AWJ20_3343 30035355 3968634..3969506 B 1 NC_031674.1 uncharacterized protein 3969506 30035355 AWJ20_3343 Sugiyamaella lignohabitans uncharacterized protein XP_018738181.1 3968634 D 796027 CDS AWJ20_3344 30035356 complement(join(3969819..3970680,3971021..3971052)) B 1 NC_031674.1 Omega class glutathione transferase; not essential; similar to Ygr154cp; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 16936141]; GO_function: GO:0045174 - glutathione dehydrogenase (ascorbate) activity [Evidence IEA]; GO_function: GO:0004364 - glutathione transferase activity [Evidence IEA]; GO_function: GO:0004364 - glutathione transferase activity [Evidence IDA,ISS] [PMID 16709151]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006749 - glutathione metabolic process [Evidence ISS] [PMID 16709151]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; Ecm4p 3971052 ECM4 30035356 ECM4 Sugiyamaella lignohabitans Ecm4p XP_018738182.1 3969819 R 796027 CDS AWJ20_3345 30035357 3972319..3976383 B 1 NC_031674.1 bifunctional endoribonuclease/protein kinase IRE1 3976383 IRE1 30035357 IRE1 Sugiyamaella lignohabitans bifunctional endoribonuclease/protein kinase IRE1 XP_018738183.1 3972319 D 796027 CDS AWJ20_3346 30035358 3976909..3977910 B 1 NC_031674.1 Putative pyridoxine 4-dehydrogenase; differentially expressed during alcoholic fermentation; expression activated by transcription factor YRM1/YOR172W; green fluorescent protein (GFP)-fusion protein localizes to both the cytoplasm and the nucleus; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0050236 - pyridoxine:NADP 4-dehydrogenase activity [Evidence IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; GO_process: GO:0042820 - vitamin B6 catabolic process [Evidence IEA]; pyridoxine 4-dehydrogenase 3977910 30035358 AWJ20_3346 Sugiyamaella lignohabitans pyridoxine 4-dehydrogenase XP_018738184.1 3976909 D 796027 CDS AWJ20_3347 30035359 3979032..3980273 B 1 NC_031674.1 Predicted membrane protein required for lumenal ER protein retention; mutants secrete the endogenous ER protein, BiP (Kar2p); GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IDA] [PMID 2178921]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006486 - protein glycosylation [Evidence IMP] [PMID 2178921]; GO_process: GO:0006621 - protein retention in ER lumen [Evidence IMP] [PMID 2178921]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Erd1p 3980273 ERD1 30035359 ERD1 Sugiyamaella lignohabitans Erd1p XP_018738185.1 3979032 D 796027 CDS AWJ20_3348 30035360 complement(3980463..3980969) B 1 NC_031674.1 uncharacterized protein 3980969 30035360 AWJ20_3348 Sugiyamaella lignohabitans uncharacterized protein XP_018738186.1 3980463 R 796027 CDS AWJ20_3349 30035361 3981572..3981781 B 1 NC_031674.1 uncharacterized protein 3981781 30035361 AWJ20_3349 Sugiyamaella lignohabitans uncharacterized protein XP_018738187.1 3981572 D 796027 CDS AWJ20_3350 30035363 3982874..3984289 B 1 NC_031674.1 Regulatory subunit of the cyclic AMP-dependent protein kinase (PKA); PKA is a component of a signaling pathway that controls a variety of cellular processes, including metabolism, cell cycle, stress response, stationary phase, and sporulation; GO_component: GO:0005952 - cAMP-dependent protein kinase complex [Evidence IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11134339]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11134339]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11914276]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 18417610]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 3288487]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 2831892]; GO_function: GO:0030552 - cAMP binding [Evidence IEA]; GO_function: GO:0004862 - cAMP-dependent protein kinase inhibitor activity [Evidence IDA] [PMID 3037314]; GO_function: GO:0004862 - cAMP-dependent protein kinase inhibitor activity [Evidence IMP] [PMID 6292221]; GO_function: GO:0008603 - cAMP-dependent protein kinase regulator activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0046580 - negative regulation of Ras protein signal transduction [Evidence IDA,IMP] [PMID 3037314]; GO_process: GO:0045762 - positive regulation of adenylate cyclase activity [Evidence IGI] [PMID 2981630]; GO_process: GO:0045762 - positive regulation of adenylate cyclase activity [Evidence IGI] [PMID 3891097]; GO_process: GO:0097271 - protein localization to bud neck [Evidence IGI] [PMID 12782684]; GO_process: GO:0045859 - regulation of protein kinase activity [Evidence IEA]; GO_process: GO:0001932 - regulation of protein phosphorylation [Evidence IEA]; cAMP-dependent protein kinase regulatory subunit BCY1 3984289 BCY1 30035363 BCY1 Sugiyamaella lignohabitans cAMP-dependent protein kinase regulatory subunit BCY1 XP_018738188.1 3982874 D 796027 CDS AWJ20_3351 30035364 complement(3985047..3987563) B 1 NC_031674.1 Putative ATPase containing the DEAD/H helicase-related sequence motif; null mutant displays increased levels of spontaneous Rad52p foci; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016887 - ATPase activity [Evidence ISS] [PMID 10077188]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0004386 - helicase activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006312 - mitotic recombination [Evidence IMP] [PMID 18085829]; Irc5p 3987563 IRC5 30035364 IRC5 Sugiyamaella lignohabitans Irc5p XP_018738189.1 3985047 R 796027 CDS AWJ20_3352 30035365 3988352..3990244 B 1 NC_031674.1 Component of the RSC chromatin remodeling complex; essential for viability and mitotic growth; homolog of SWI/SNF subunit Swi3p, but unlike Swi3p, does not activate transcription of reporters; GO_component: GO:0016586 - RSC complex [Evidence IDA] [PMID 10619019]; GO_component: GO:0016586 - RSC complex [Evidence IDA] [PMID 12183366]; GO_component: GO:0016586 - RSC complex [Evidence IDA] [PMID 8980231]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11914276]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0003677 - DNA binding [Evidence IDA] [PMID 16461455]; GO_function: GO:0015616 - DNA translocase activity [Evidence IDA] [PMID 12183366]; GO_function: GO:0015616 - DNA translocase activity [Evidence IDA] [PMID 16455496]; GO_function: GO:0015616 - DNA translocase activity [Evidence IDA] [PMID 17188033]; GO_function: GO:0015616 - DNA translocase activity [Evidence IDA] [PMID 17918861]; GO_function: GO:0003682 - chromatin binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0043044 - ATP-dependent chromatin remodeling [Evidence IDA] [PMID 12183366]; GO_process: GO:0043044 - ATP-dependent chromatin remodeling [Evidence IDA] [PMID 8980231]; GO_process: GO:0000082 - G1/S transition of mitotic cell cycle [Evidence IMP] [PMID 17542652]; GO_process: GO:0016568 - chromatin modification [Evidence IEA]; GO_process: GO:0006303 - double-strand break repair via nonhomologous end joining [Evidence IDA,IMP] [PMID 15870268]; GO_process: GO:0006337 - nucleosome disassembly [Evidence IDA] [PMID 16492771]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IMP] [PMID 10329629]; GO_process: GO:0006368 - transcription elongation from RNA polymerase II promoter [Evidence IDA] [PMID 17081996]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Rsc8p 3990244 RSC8 30035365 RSC8 Sugiyamaella lignohabitans Rsc8p XP_018738190.1 3988352 D 796027 CDS AWJ20_3353 30035366 complement(3990927..3992063) B 1 NC_031674.1 Endoplasmic reticulum (ER) membrane protein; involved in the translocation of soluble secretory proteins and insertion of membrane proteins into the ER membrane; may also have a role in the stress response but has only partial functional overlap with WSC1-3; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IDA] [PMID 10196219]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_function: GO:0008565 - protein transporter activity [Evidence IMP] [PMID 10196219]; GO_process: GO:0045047 - protein targeting to ER [Evidence IMP] [PMID 10196219]; GO_process: GO:0006612 - protein targeting to membrane [Evidence IMP] [PMID 10196219]; GO_process: GO:0009408 - response to heat [Evidence IGI] [PMID 11589572]; Wsc4p 3992063 WSC4 30035366 WSC4 Sugiyamaella lignohabitans Wsc4p XP_018738191.1 3990927 R 796027 CDS AWJ20_3354 30035367 complement(3996459..3997298) B 1 NC_031674.1 Zinc transporter; localizes to the ER; null mutant is sensitive to calcofluor white, leads to zinc accumulation in cytosol; ortholog of the mouse KE4 and member of the ZIP (ZRT, IRT-like Protein) family; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 16760462]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_function: GO:0046873 - metal ion transmembrane transporter activity [Evidence IEA]; GO_function: GO:0005385 - zinc ion transmembrane transporter activity [Evidence IMP] [PMID 16760462]; GO_process: GO:0006811 - ion transport [Evidence IEA]; GO_process: GO:0030001 - metal ion transport [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0006829 - zinc ion transport [Evidence IEA]; GO_process: GO:0006829 - zinc ion transport [Evidence IMP] [PMID 16760462]; Zn(2+) transporter YKE4 3997298 YKE4 30035367 YKE4 Sugiyamaella lignohabitans Zn(2+) transporter YKE4 XP_018738192.1 3996459 R 796027 CDS AWJ20_3355 30035368 3998284..3999324 B 1 NC_031674.1 uncharacterized protein 3999324 30035368 AWJ20_3355 Sugiyamaella lignohabitans uncharacterized protein XP_018738193.1 3998284 D 796027 CDS AWJ20_3356 30035369 complement(3999360..4001438) B 1 NC_031674.1 Fatty-acyl coenzyme A oxidase; involved in the fatty acid beta-oxidation pathway; localized to the peroxisomal matrix; GO_component: GO:0005782 - peroxisomal matrix [Evidence IDA] [PMID 11967269]; GO_component: GO:0005777 - peroxisome [Evidence IEA,IEA,IEA]; GO_function: GO:0003995 - acyl-CoA dehydrogenase activity [Evidence IEA]; GO_function: GO:0003997 - acyl-CoA oxidase activity [Evidence IEA,IEA]; GO_function: GO:0003997 - acyl-CoA oxidase activity [Evidence ISA] [PMID 2189786]; GO_function: GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0016627 - oxidoreductase activity, acting on the CH-CH group of donors [Evidence IEA]; GO_process: GO:0006635 - fatty acid beta-oxidation [Evidence IEA]; GO_process: GO:0006635 - fatty acid beta-oxidation [Evidence IMP] [PMID 12819196]; GO_process: GO:0033540 - fatty acid beta-oxidation using acyl-CoA oxidase [Evidence IEA]; GO_process: GO:0033540 - fatty acid beta-oxidation using acyl-CoA oxidase [Evidence ISA] [PMID 2189786]; GO_process: GO:0006631 - fatty acid metabolic process [Evidence IEA,IEA]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; acyl-CoA oxidase 4001438 POX1 30035369 POX1 Sugiyamaella lignohabitans acyl-CoA oxidase XP_018738194.1 3999360 R 796027 CDS AWJ20_3358 30035371 complement(4003379..4004800) B 1 NC_031674.1 Cytoplasmic pre-60S factor; required for the correct recycling of shuttling factors Alb1, Arx1 and Tif6 at the end of the ribosomal large subunit biogenesis; involved in bud growth in the mitotic signaling network; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 15107529]; GO_component: GO:0022625 - cytosolic large ribosomal subunit [Evidence IDA] [PMID 16648468]; GO_component: GO:0022625 - cytosolic large ribosomal subunit [Evidence IDA] [PMID 19433447]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 16648468]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 19433447]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 23212245]; GO_function: GO:0046872 - metal ion binding [Evidence IEA,IEA]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19111667]; GO_process: GO:0007117 - budding cell bud growth [Evidence IGI] [PMID 15107529]; GO_process: GO:0000278 - mitotic cell cycle [Evidence IGI] [PMID 15107529]; GO_process: GO:0006913 - nucleocytoplasmic transport [Evidence IMP] [PMID 16651379]; GO_process: GO:0042273 - ribosomal large subunit biogenesis [Evidence IGI,IMP] [PMID 16648468]; GO_process: GO:0042273 - ribosomal large subunit biogenesis [Evidence IMP] [PMID 16651379]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; Rei1p 4004800 REI1 30035371 REI1 Sugiyamaella lignohabitans Rei1p XP_018738195.1 4003379 R 796027 CDS AWJ20_3359 30035372 4006410..4008761 B 1 NC_031674.1 Protein required for processing of 20S pre-rRNA in the cytoplasm; associates with pre-40S ribosomal particles; inhibits the premature association of 60S subunits with assembling 40S subunits in the cytoplasm; similar to Bms1p; relocalizes from nucleus to cytoplasm upon DNA replication stress; GO_component: GO:0030686 - 90S preribosome [Evidence IDA] [PMID 12150911]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 15167894]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 11565749]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 15167894]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_function: GO:0043021 - ribonucleoprotein complex binding [Evidence IDA] [PMID 15167894]; GO_process: GO:0006364 - rRNA processing [Evidence IMP] [PMID 12089522]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA,IEA]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IMP] [PMID 11565749]; Tsr1p 4008761 TSR1 30035372 TSR1 Sugiyamaella lignohabitans Tsr1p XP_018738196.1 4006410 D 796027 CDS AWJ20_3360 30035374 4009244..4011886 B 1 NC_031674.1 Serine protease of SPS plasma membrane amino acid sensor system; contains an inhibitory domain that dissociates in response to extracellular amino acids, freeing a catalytic domain to activate transcription factor Stp1p; other members are Ssy1p and Ptr3p; GO_component: GO:0019897 - extrinsic component of plasma membrane [Evidence IDA] [PMID 11154269]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_function: GO:0004252 - serine-type endopeptidase activity [Evidence IMP,ISS] [PMID 16524914]; GO_function: GO:0004252 - serine-type endopeptidase activity [Evidence IDA] [PMID 16778074]; GO_process: GO:0016485 - protein processing [Evidence IMP] [PMID 16524914]; GO_process: GO:0016485 - protein processing [Evidence IDA] [PMID 16778074]; GO_process: GO:0006508 - proteolysis [Evidence IEA]; GO_process: GO:0043200 - response to amino acid [Evidence IGI,IMP] [PMID 11154269]; Ssy5p 4011886 SSY5 30035374 SSY5 Sugiyamaella lignohabitans Ssy5p XP_018738197.1 4009244 D 796027 CDS AWJ20_3361 30035375 complement(4011988..4014420) B 1 NC_031674.1 exosome nuclease subunit RRP6 4014420 RRP6 30035375 RRP6 Sugiyamaella lignohabitans exosome nuclease subunit RRP6 XP_018738198.1 4011988 R 796027 CDS AWJ20_3362 30035376 4016191..4017507 B 1 NC_031674.1 putative serine/threonine protein kinase ENV7 4017507 ENV7 30035376 ENV7 Sugiyamaella lignohabitans putative serine/threonine protein kinase ENV7 XP_018738199.1 4016191 D 796027 CDS AWJ20_3363 30035377 4018432..4019055 B 1 NC_031674.1 uncharacterized protein 4019055 30035377 AWJ20_3363 Sugiyamaella lignohabitans uncharacterized protein XP_018738200.1 4018432 D 796027 CDS AWJ20_3364 30035378 4020126..4021988 B 1 NC_031674.1 Alpha subunit of COPI vesicle coatomer complex; complex surrounds transport vesicles in the early secretory pathway; GO_component: GO:0030126 - COPI vesicle coat [Evidence IEA]; GO_component: GO:0030126 - COPI vesicle coat [Evidence IMP,ISS] [PMID 8001155]; GO_component: GO:0030663 - COPI-coated vesicle membrane [Evidence IEA]; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0031410 - cytoplasmic vesicle [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0030117 - membrane coat [Evidence IEA]; GO_function: GO:0005198 - structural molecule activity [Evidence IEA]; GO_function: GO:0043130 - ubiquitin binding [Evidence IDA] [PMID 21070969]; GO_process: GO:0006888 - ER to Golgi vesicle-mediated transport [Evidence IMP] [PMID 9427388]; GO_process: GO:0006886 - intracellular protein transport [Evidence IEA]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006890 - retrograde vesicle-mediated transport, Golgi to ER [Evidence IMP] [PMID 8001155]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IEA,IEA]; Cop1p 4021988 COP1 30035378 COP1 Sugiyamaella lignohabitans Cop1p XP_018738201.1 4020126 D 796027 CDS AWJ20_3365 30035379 complement(join(4022186..4023007,4023073..4023201)) B 1 NC_031674.1 Beta subunit of the translation initiation factor eIF2; involved in the identification of the start codon; proposed to be involved in mRNA binding; GO_component: GO:0016282 - eukaryotic 43S preinitiation complex [Evidence IDA] [PMID 12008673]; GO_component: GO:0005850 - eukaryotic translation initiation factor 2 complex [Evidence IDA,IMP] [PMID 12137565]; GO_component: GO:0043614 - multi-eIF complex [Evidence IDA] [PMID 11018020]; GO_component: GO:0043614 - multi-eIF complex [Evidence IDA] [PMID 15838098]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 9858542]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0003743 - translation initiation factor activity [Evidence IEA,IEA]; GO_function: GO:0003743 - translation initiation factor activity [Evidence IMP] [PMID 12137565]; GO_function: GO:0031369 - translation initiation factor binding [Evidence IDA,IPI] [PMID 15145951]; GO_function: GO:0031369 - translation initiation factor binding [Evidence IDA,IPI] [PMID 22683627]; GO_function: GO:0031369 - translation initiation factor binding [Evidence IDA,IPI] [PMID 9395514]; GO_process: GO:0001731 - formation of translation preinitiation complex [Evidence IDA] [PMID 12008673]; GO_process: GO:0001731 - formation of translation preinitiation complex [Evidence IMP] [PMID 16449648]; GO_process: GO:0006412 - translation [Evidence IEA]; GO_process: GO:0006413 - translational initiation [Evidence IEA,IEA]; translation initiation factor eIF2 subunit beta 4023201 SUI3 30035379 SUI3 Sugiyamaella lignohabitans translation initiation factor eIF2 subunit beta XP_018738202.1 4022186 R 796027 CDS AWJ20_3366 30035380 complement(4024721..4024939) B 1 NC_031674.1 Hexose transporter 2 4024939 30035380 AWJ20_3366 Sugiyamaella lignohabitans Hexose transporter 2 XP_018738203.1 4024721 R 796027 CDS AWJ20_3367 30035381 4026151..4026432 B 1 NC_031674.1 enolase C-terminal domain-like protein 4026432 30035381 AWJ20_3367 Sugiyamaella lignohabitans enolase C-terminal domain-like protein XP_018738204.1 4026151 D 796027 CDS AWJ20_3368 30035382 4026500..4027408 B 1 NC_031674.1 uncharacterized protein 4027408 30035382 AWJ20_3368 Sugiyamaella lignohabitans uncharacterized protein XP_018738205.1 4026500 D 796027 CDS AWJ20_3369 30035383 complement(4027602..4028729) B 1 NC_031674.1 Cytochrome b2 (L-lactate cytochrome-c oxidoreductase); component of the mitochondrial intermembrane space, required for lactate utilization; expression is repressed by glucose and anaerobic conditions; GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IEA]; GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IDA] [PMID 3004948]; GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IDA] [PMID 6290489]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 11502169]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0070469 - respiratory chain [Evidence IEA]; GO_function: GO:0010181 - FMN binding [Evidence IEA]; GO_function: GO:0004460 - L-lactate dehydrogenase (cytochrome) activity [Evidence IEA]; GO_function: GO:0004460 - L-lactate dehydrogenase (cytochrome) activity [Evidence IDA] [PMID 3004948]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0020037 - heme binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_process: GO:0006089 - lactate metabolic process [Evidence IMP] [PMID 8492799]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; Cyb2p 4028729 CYB2 30035383 CYB2 Sugiyamaella lignohabitans Cyb2p XP_018738206.1 4027602 R 796027 CDS AWJ20_3370 30035385 4029421..4030272 B 1 NC_031674.1 uncharacterized protein 4030272 30035385 AWJ20_3370 Sugiyamaella lignohabitans uncharacterized protein XP_018738207.1 4029421 D 796027 CDS AWJ20_3371 30035386 complement(4030466..4032688) B 1 NC_031674.1 Zinc finger transcriptional activator of the Zn2Cys6 family; activates transcription of aromatic amino acid catabolic genes in the presence of aromatic amino acids; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 23651256]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19158363]; GO_function: GO:0000981 - sequence-specific DNA binding RNA polymerase II transcription factor activity [Evidence IEA]; GO_function: GO:0000981 - sequence-specific DNA binding RNA polymerase II transcription factor activity [Evidence ISS] [PMID 10207060]; GO_function: GO:0000981 - sequence-specific DNA binding RNA polymerase II transcription factor activity [Evidence IDA] [PMID 23651256]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0006559 - L-phenylalanine catabolic process [Evidence IEA]; GO_process: GO:0009074 - aromatic amino acid family catabolic process [Evidence IMP] [PMID 10207060]; GO_process: GO:0009083 - branched-chain amino acid catabolic process [Evidence IEA]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 10207060]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA,IEA]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006569 - tryptophan catabolic process [Evidence IEA]; GO_process: GO:0006572 - tyrosine catabolic process [Evidence IEA]; Aro80p 4032688 ARO80 30035386 ARO80 Sugiyamaella lignohabitans Aro80p XP_018738208.1 4030466 R 796027 CDS AWJ20_3372 30035387 4033172..4033957 B 1 NC_031674.1 Peroxisomal 2,4-dienoyl-CoA reductase; auxiliary enzyme of fatty acid beta-oxidation; homodimeric enzyme required for growth and sporulation on petroselineate medium; expression induced during late sporulation and in the presence of oleate; GO_component: GO:0005782 - peroxisomal matrix [Evidence IDA] [PMID 9268358]; GO_component: GO:0005777 - peroxisome [Evidence IEA,IEA]; GO_function: GO:0008670 - 2,4-dienoyl-CoA reductase (NADPH) activity [Evidence IEA]; GO_function: GO:0008670 - 2,4-dienoyl-CoA reductase (NADPH) activity [Evidence IDA,ISS] [PMID 9268358]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_process: GO:0030437 - ascospore formation [Evidence IEP,IMP] [PMID 7969036]; GO_process: GO:0009062 - fatty acid catabolic process [Evidence IDA,ISS] [PMID 9268358]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; GO_process: GO:0030435 - sporulation resulting in formation of a cellular spore [Evidence IEA]; Sps19p 4033957 SPS19 30035387 SPS19 Sugiyamaella lignohabitans Sps19p XP_018738209.1 4033172 D 796027 CDS AWJ20_3373 30035388 4036333..4038132 B 1 NC_031674.1 transcription factor MIG1 4038132 MIG1 30035388 MIG1 Sugiyamaella lignohabitans transcription factor MIG1 XP_018738210.1 4036333 D 796027 CDS AWJ20_3374 30035389 complement(4038281..4039243) B 1 NC_031674.1 Molybdenum cofactor sulfurase 4039243 30035389 AWJ20_3374 Sugiyamaella lignohabitans Molybdenum cofactor sulfurase XP_018738211.1 4038281 R 796027 CDS AWJ20_3376 30035391 4047839..4048327 B 1 NC_031674.1 uncharacterized protein 4048327 30035391 AWJ20_3376 Sugiyamaella lignohabitans uncharacterized protein XP_018738212.1 4047839 D 796027 CDS AWJ20_3377 30035392 complement(join(4049125..4050993,4052308..4052553)) B 1 NC_031674.1 mRNA-binding ubiquitin-specific protease UBP3 4052553 UBP3 30035392 UBP3 Sugiyamaella lignohabitans mRNA-binding ubiquitin-specific protease UBP3 XP_018738213.1 4049125 R 796027 CDS AWJ20_3378 30035393 complement(4052760..4055282) B 1 NC_031674.1 Subunit of the heterodimeric FACT complex (Spt16p-Pob3p); FACT associates with chromatin via interaction with Nhp6Ap and Nhp6Bp, and reorganizes nucleosomes to facilitate access to DNA by RNA and DNA polymerases; SPT16 specifically required for diauxic shift-induced H2B deposition onto rDNA genes; some mutations cause reduced nucleosome occupancy over highly transcribed regions of the yeast genome; GO_component: GO:0035101 - FACT complex [Evidence IGI,IPI] [PMID 11432837]; GO_component: GO:0005658 - alpha DNA polymerase:primase complex [Evidence IDA] [PMID 10413469]; GO_component: GO:0005694 - chromosome [Evidence IEA,IEA]; GO_component: GO:0000790 - nuclear chromatin [Evidence IDA] [PMID 10413469]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0031298 - replication fork protection complex [Evidence IDA] [PMID 16531994]; GO_component: GO:0008023 - transcription elongation factor complex [Evidence IPI] [PMID 12242279]; GO_function: GO:0003682 - chromatin binding [Evidence IDA] [PMID 10413469]; GO_function: GO:0042393 - histone binding [Evidence IDA] [PMID 18089575]; GO_function: GO:0031491 - nucleosome binding [Evidence IDA] [PMID 11432837]; GO_process: GO:0006281 - DNA repair [Evidence IEA]; GO_process: GO:0006260 - DNA replication [Evidence IEA]; GO_process: GO:0034724 - DNA replication-independent nucleosome organization [Evidence IDA] [PMID 19683499]; GO_process: GO:0006261 - DNA-dependent DNA replication [Evidence IPI] [PMID 9199353]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0006334 - nucleosome assembly [Evidence IDA] [PMID 12952948]; GO_process: GO:0006334 - nucleosome assembly [Evidence IDA] [PMID 15082784]; GO_process: GO:0045899 - positive regulation of RNA polymerase II transcriptional preinitiation complex assembly [Evidence IDA] [PMID 15987999]; GO_process: GO:0060261 - positive regulation of transcription initiation from RNA polymerase II promoter [Evidence IGI] [PMID 15987999]; GO_process: GO:0060261 - positive regulation of transcription initiation from RNA polymerase II promoter [Evidence IMP] [PMID 19574230]; GO_process: GO:0034401 - regulation of transcription by chromatin organization [Evidence IMP] [PMID 19683500]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006368 - transcription elongation from RNA polymerase II promoter [Evidence IPI] [PMID 12242279]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; chromatin-remodeling protein SPT16 4055282 SPT16 30035393 SPT16 Sugiyamaella lignohabitans chromatin-remodeling protein SPT16 XP_018738214.1 4052760 R 796027 CDS AWJ20_3379 30035394 4057270..4057647 B 1 NC_031674.1 Rab family GTPase involved in the exocytic pathway; mediates intra-Golgi traffic or the budding of post-Golgi vesicles from the trans-Golgi; protein abundance increases in response to DNA replication stress; YPT32 has a paralog, YPT31, that arose from the whole genome duplication; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0005794 - Golgi apparatus [Evidence IDA] [PMID 15537705]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA]; GO_component: GO:0005768 - endosome [Evidence IDA] [PMID 15537705]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IDA] [PMID 16407407]; GO_function: GO:0005525 - GTP binding [Evidence IEA,IEA]; GO_function: GO:0003924 - GTPase activity [Evidence IDA] [PMID 11210571]; GO_function: GO:0003924 - GTPase activity [Evidence ISS] [PMID 9151665]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006914 - autophagy [Evidence IEA]; GO_process: GO:0034498 - early endosome to Golgi transport [Evidence IGI] [PMID 15537705]; GO_process: GO:0006887 - exocytosis [Evidence IEA]; GO_process: GO:0006887 - exocytosis [Evidence IMP] [PMID 9151665]; GO_process: GO:0015031 - protein transport [Evidence IEA,IEA]; GO_process: GO:0007264 - small GTPase mediated signal transduction [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IGI,IMP] [PMID 9151665]; Rab family GTPase YPT32 4057647 YPT32 30035394 YPT32 Sugiyamaella lignohabitans Rab family GTPase YPT32 XP_018738215.1 4057270 D 796027 CDS AWJ20_3380 30035396 complement(4057996..4058571) B 1 NC_031674.1 uncharacterized protein 4058571 30035396 AWJ20_3380 Sugiyamaella lignohabitans uncharacterized protein XP_018738216.1 4057996 R 796027 CDS AWJ20_3381 30035397 4059259..4059588 B 1 NC_031674.1 Sm snRNP core protein Smb1 4059588 smb1 30035397 smb1 Sugiyamaella lignohabitans Sm snRNP core protein Smb1 XP_018738217.1 4059259 D 796027 CDS AWJ20_3382 30035398 complement(4059876..4061984) B 1 NC_031674.1 uncharacterized protein 4061984 30035398 AWJ20_3382 Sugiyamaella lignohabitans uncharacterized protein XP_018738218.1 4059876 R 796027 CDS AWJ20_3383 30035399 4065235..4067091 B 1 NC_031674.1 mRNA-binding protein expressed during iron starvation; binds to a sequence element in the 3'-untranslated regions of specific mRNAs to mediate their degradation; involved in iron homeostasis; protein increases in abundance and relative distribution to the nucleus increases upon DNA replication stress; TIS11 has a paralog, CTH1, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 21135132]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0000932 - cytoplasmic mRNA processing body [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 18923425]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 15652485]; GO_function: GO:0046872 - metal ion binding [Evidence IEA,IEA]; GO_process: GO:0006879 - cellular iron ion homeostasis [Evidence IMP] [PMID 15652485]; GO_process: GO:0000956 - nuclear-transcribed mRNA catabolic process [Evidence IMP] [PMID 15652485]; Tis11p 4067091 TIS11 30035399 TIS11 Sugiyamaella lignohabitans Tis11p XP_018738219.1 4065235 D 796027 CDS AWJ20_3387 30035403 4076714..4084198 B 1 NC_031674.1 Positive regulator of the Gcn2p kinase activity; forms a complex with Gcn20p; proposed to stimulate Gcn2p activation by an uncharged tRNA; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 9234705]; GO_component: GO:0022626 - cytosolic ribosome [Evidence IDA] [PMID 9234705]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006417 - regulation of translation [Evidence IEA]; GO_process: GO:0006448 - regulation of translational elongation [Evidence IMP,IPI] [PMID 9234705]; Gcn1p 4084198 GCN1 30035403 GCN1 Sugiyamaella lignohabitans Gcn1p XP_018738220.1 4076714 D 796027 CDS AWJ20_3388 30035404 complement(4084372..4086198) B 1 NC_031674.1 Nuclear protein that negatively regulates pseudohyphal differentiation; plays a regulatory role in the cyclic AMP (cAMP)-dependent protein kinase (PKA) signal transduction pathway; relocalizes to the cytosol in response to hypoxia; SOK2 has a paralog, PHD1, that arose from the whole genome duplication; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 22932476]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22932476]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19111667]; GO_function: GO:0003700 - sequence-specific DNA binding transcription factor activity [Evidence IEA]; GO_function: GO:0003700 - sequence-specific DNA binding transcription factor activity [Evidence ISS] [PMID 8524252]; GO_process: GO:0007124 - pseudohyphal growth [Evidence IMP] [PMID 11046133]; GO_process: GO:0007124 - pseudohyphal growth [Evidence IMP] [PMID 8524252]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA,IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Sok2p 4086198 SOK2 30035404 SOK2 Sugiyamaella lignohabitans Sok2p XP_018738221.1 4084372 R 796027 CDS AWJ20_3389 30035405 4089904..4091730 B 1 NC_031674.1 uncharacterized protein 4091730 30035405 AWJ20_3389 Sugiyamaella lignohabitans uncharacterized protein XP_018738222.1 4089904 D 796027 CDS AWJ20_3390 30035407 complement(4091936..4093069) B 1 NC_031674.1 Bifunctional chorismate synthase and flavin reductase; catalyzes the conversion of 5-enolpyruvylshikimate 3-phosphate (EPSP) to form chorismate, which is a precursor to aromatic amino acids; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 19793921]; GO_function: GO:0004107 - chorismate synthase activity [Evidence IEA,IEA]; GO_function: GO:0004107 - chorismate synthase activity [Evidence IDA,IMP] [PMID 8971708]; GO_function: GO:0016829 - lyase activity [Evidence IEA]; GO_function: GO:0042602 - riboflavin reductase (NADPH) activity [Evidence IDA] [PMID 8971708]; GO_process: GO:0009073 - aromatic amino acid family biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0009073 - aromatic amino acid family biosynthetic process [Evidence IMP] [PMID 8971708]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0009423 - chorismate biosynthetic process [Evidence IEA]; GO_process: GO:0009423 - chorismate biosynthetic process [Evidence TAS] [PMID 1943992]; GO_process: GO:0006950 - response to stress [Evidence IEA]; bifunctional chorismate synthase/riboflavin reductase [NAD(P)H] ARO2 4093069 ARO2 30035407 ARO2 Sugiyamaella lignohabitans bifunctional chorismate synthase/riboflavin reductase [NAD(P)H] ARO2 XP_018738223.1 4091936 R 796027 CDS AWJ20_3391 30035408 4093453..4094316 B 1 NC_031674.1 Signal recognition particle (SRP) receptor beta subunit; involved in SRP-dependent protein targeting; anchors the alpha subunit, Srp101p to the ER membrane; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0030176 - integral component of endoplasmic reticulum membrane [Evidence IDA] [PMID 9679135]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005785 - signal recognition particle receptor complex [Evidence IPI] [PMID 9679135]; GO_function: GO:0005525 - GTP binding [Evidence IEA]; GO_function: GO:0005525 - GTP binding [Evidence IPI] [PMID 7844142]; GO_function: GO:0003924 - GTPase activity [Evidence ISS] [PMID 7844142]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0005047 - signal recognition particle binding [Evidence IMP,IPI,ISS] [PMID 9679135]; GO_process: GO:0006614 - SRP-dependent cotranslational protein targeting to membrane [Evidence IC,TAS] [PMID 7844142]; GO_process: GO:0045047 - protein targeting to ER [Evidence IMP] [PMID 9679135]; Signal recognition particle receptor subunit beta 4094316 SRP102 30035408 SRP102 Sugiyamaella lignohabitans Signal recognition particle receptor subunit beta XP_018738224.1 4093453 D 796027 CDS AWJ20_3392 30035409 complement(4094613..4095239) B 1 NC_031674.1 uncharacterized protein 4095239 30035409 AWJ20_3392 Sugiyamaella lignohabitans uncharacterized protein XP_018738225.1 4094613 R 796027 CDS AWJ20_3393 30035410 join(4098560..4098582,4098706..4102066) B 1 NC_031674.1 Component of the eisosome required for proper eisosome assembly; similar to Uso1p; authentic, non-tagged protein is detected in a phosphorylated state in highly purified mitochondria in high-throughput studies; protein increases in abundance and relocalizes from plasma membrane to cytoplasm upon DNA replication stress; EIS1 has a paralog, YKL050C, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0032126 - eisosome [Evidence IDA] [PMID 19269952]; GO_component: GO:0032126 - eisosome [Evidence IDA,IGI] [PMID 20526336]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0045121 - membrane raft [Evidence IDA] [PMID 19064668]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 22842922]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0070941 - eisosome assembly [Evidence IMP] [PMID 20526336]; Eis1p 4102066 EIS1 30035410 EIS1 Sugiyamaella lignohabitans Eis1p XP_018738226.1 4098560 D 796027 CDS AWJ20_3394 30035411 complement(4102262..4103125) B 1 NC_031674.1 Plasma membrane protein that may act to generate normal levels of PI4P; may act together with or upstream of Stt4p; at least partially mediates proper localization of Stt4p to the plasma membrane; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA,IMP] [PMID 12015967]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0030036 - actin cytoskeleton organization [Evidence IGI] [PMID 12015967]; GO_process: GO:0048017 - inositol lipid-mediated signaling [Evidence IGI] [PMID 12015967]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0007033 - vacuole organization [Evidence IGI] [PMID 12015967]; Sfk1p 4103125 SFK1 30035411 SFK1 Sugiyamaella lignohabitans Sfk1p XP_018738227.1 4102262 R 796027 CDS AWJ20_3395 30035412 4104474..4107092 B 1 NC_031674.1 Putative transcription factor; contains a Zn(II)2Cys6 zinc finger domain characteristic of DNA-binding proteins; computational analysis suggests a role in regulation of expression of genes encoding transporters; binds Sin3p in a two-hybrid assay; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IC] [PMID 15343339]; GO_component: GO:0005634 - nucleus [Evidence ISS] [PMID 9393435]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0003677 - DNA binding [Evidence IPI] [PMID 15343339]; GO_function: GO:0003677 - DNA binding [Evidence ISS] [PMID 9393435]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19111667]; GO_function: GO:0000981 - sequence-specific DNA binding RNA polymerase II transcription factor activity [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence IEA]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA,IEA]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA,IEA]; Stb4p 4107092 STB4 30035412 STB4 Sugiyamaella lignohabitans Stb4p XP_018738228.1 4104474 D 796027 CDS AWJ20_3396 30035413 complement(4107259..4108029) B 1 NC_031674.1 Protein that interacts with Rab GTPases; localized to late Golgi vesicles; computational analysis of large-scale protein-protein interaction data suggests a possible role in vesicle-mediated transport; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0005794 - Golgi apparatus [Evidence IDA] [PMID 17178117]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 11943201]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_function: GO:0017137 - Rab GTPase binding [Evidence IPI] [PMID 11943201]; GO_process: GO:0008150 - biological_process [Evidence ND]; Yip4p 4108029 YIP4 30035413 YIP4 Sugiyamaella lignohabitans Yip4p XP_018738229.1 4107259 R 796027 CDS AWJ20_3397 30035414 complement(4108454..4112077) B 1 NC_031674.1 serine/threonine protein kinase SAK1 4112077 SAK1 30035414 SAK1 Sugiyamaella lignohabitans serine/threonine protein kinase SAK1 XP_018738230.1 4108454 R 796027 CDS AWJ20_3398 30035415 4113015..4114526 B 1 NC_031674.1 Putative chitinase; functionally complements A. gossypii cts2 mutant sporulation defect; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005576 - extracellular region [Evidence IEA,IEA]; GO_function: GO:0004568 - chitinase activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016798 - hydrolase activity, acting on glycosyl bonds [Evidence IEA]; GO_function: GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0005975 - carbohydrate metabolic process [Evidence IEA,IEA]; GO_process: GO:0006032 - chitin catabolic process [Evidence IEA,IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0000272 - polysaccharide catabolic process [Evidence IEA]; GO_process: GO:0030435 - sporulation resulting in formation of a cellular spore [Evidence IEA]; GO_process: GO:0030435 - sporulation resulting in formation of a cellular spore [Evidence IGI] [PMID 18809304]; Cts2p 4114526 CTS2 30035415 CTS2 Sugiyamaella lignohabitans Cts2p XP_018738231.1 4113015 D 796027 CDS AWJ20_3399 30035416 4120820..4123666 B 1 NC_031674.1 Cyclin-dependent kinase (CDK) inhibitor; regulates Pho80p-Pho85p and Pcl7p-Pho85p cyclin-CDK complexes in response to phosphate levels; inhibitory activity for Pho80p-Pho85p requires myo-D-inositol heptakisphosphate (IP7) generated by Vip1p; relative distribution to the nucleus increases upon DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 16611745]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_function: GO:0004861 - cyclin-dependent protein serine/threonine kinase inhibitor activity [Evidence IMP] [PMID 11069666]; GO_function: GO:0004861 - cyclin-dependent protein serine/threonine kinase inhibitor activity [Evidence IMP] [PMID 7939631]; GO_function: GO:0008081 - phosphoric diester hydrolase activity [Evidence IEA]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0006796 - phosphate-containing compound metabolic process [Evidence IMP] [PMID 4570606]; Pho81p 4123666 PHO81 30035416 PHO81 Sugiyamaella lignohabitans Pho81p XP_018738232.1 4120820 D 796027 CDS AWJ20_3400 30035419 complement(4123884..4124441) B 1 NC_031674.1 Component of the SSU processome; SSU processome is required for pre-18S rRNA processing, essential protein that interacts with Mpp10p and mediates interactions of Imp4p and Mpp10p with U3 snoRNA; GO_component: GO:0030686 - 90S preribosome [Evidence IDA] [PMID 12150911]; GO_component: GO:0034457 - Mpp10 complex [Evidence IDA] [PMID 17515605]; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0032040 - small-subunit processome [Evidence IDA] [PMID 12068309]; GO_component: GO:0032040 - small-subunit processome [Evidence IMP] [PMID 12242301]; GO_function: GO:0003723 - RNA binding [Evidence IEA,IEA]; GO_function: GO:0019843 - rRNA binding [Evidence IEA,IEA]; GO_function: GO:0030515 - snoRNA binding [Evidence ISS] [PMID 10409734]; GO_function: GO:0030515 - snoRNA binding [Evidence IDA] [PMID 15489263]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0006364 - rRNA processing [Evidence TAS] [PMID 10690410]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; GO_process: GO:0042254 - ribosome biogenesis [Evidence TAS] [PMID 11087857]; Imp3p 4124441 IMP3 30035419 IMP3 Sugiyamaella lignohabitans Imp3p XP_018738233.1 4123884 R 796027 CDS AWJ20_3401 30035420 4124743..4125492 B 1 NC_031674.1 Mitochondrial ribosomal protein of the large subunit; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0005762 - mitochondrial large ribosomal subunit [Evidence IPI] [PMID 12392552]; GO_component: GO:0005762 - mitochondrial large ribosomal subunit [Evidence IDA] [PMID 9151978]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA,IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0019843 - rRNA binding [Evidence IEA,IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IPI] [PMID 12392552]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IDA] [PMID 9151978]; GO_process: GO:0032543 - mitochondrial translation [Evidence IC] [PMID 12392552]; GO_process: GO:0032543 - mitochondrial translation [Evidence IC] [PMID 9151978]; GO_process: GO:0006412 - translation [Evidence IEA]; mitochondrial 54S ribosomal protein YmL16 4125492 MRPL6 30035420 MRPL6 Sugiyamaella lignohabitans mitochondrial 54S ribosomal protein YmL16 XP_018738234.1 4124743 D 796027 CDS AWJ20_3402 30035421 complement(4125690..4126337) B 1 NC_031674.1 Mitochondrial inner membrane protein; required for assembly of the cytochrome c oxidase complex (complex IV); interacts with complex IV assembly factor Shy1p during the early stages of assembly; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0031305 - integral component of mitochondrial inner membrane [Evidence IDA] [PMID 17882259]; GO_component: GO:0032592 - integral component of mitochondrial membrane [Evidence IDA] [PMID 17882260]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0033617 - mitochondrial respiratory chain complex IV assembly [Evidence IMP,IPI] [PMID 17882259]; GO_process: GO:0033617 - mitochondrial respiratory chain complex IV assembly [Evidence IMP] [PMID 17882260]; Coa1p 4126337 COA1 30035421 COA1 Sugiyamaella lignohabitans Coa1p XP_018738235.1 4125690 R 796027 CDS AWJ20_3403 30035422 4126538..4127431 B 1 NC_031674.1 Mitochondrial ribosomal protein of the large subunit; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0005762 - mitochondrial large ribosomal subunit [Evidence ISS] [PMID 1597181]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA,IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence ISS] [PMID 1597181]; GO_process: GO:0002181 - cytoplasmic translation [Evidence ISS] [PMID 1597181]; GO_process: GO:0006412 - translation [Evidence IEA]; mitochondrial 54S ribosomal protein YmL9 4127431 MRPL9 30035422 MRPL9 Sugiyamaella lignohabitans mitochondrial 54S ribosomal protein YmL9 XP_018738236.1 4126538 D 796027 CDS AWJ20_3404 30035423 complement(4127655..4130603) B 1 NC_031674.1 Major karyopherin; involved in export of proteins, RNAs, and ribosomal subunits from the nucleus; exportin; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0000776 - kinetochore [Evidence IDA] [PMID 19139260]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9891088]; GO_component: GO:0048471 - perinuclear region of cytoplasm [Evidence IEA]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 23212245]; GO_component: GO:0005816 - spindle pole body [Evidence IDA] [PMID 18573877]; GO_function: GO:0008536 - Ran GTPase binding [Evidence IEA]; GO_function: GO:0008565 - protein transporter activity [Evidence IMP] [PMID 9323132]; GO_function: GO:0008565 - protein transporter activity [Evidence IDA] [PMID 9857197]; GO_process: GO:0006886 - intracellular protein transport [Evidence IEA]; GO_process: GO:0006406 - mRNA export from nucleus [Evidence IMP] [PMID 9323132]; GO_process: GO:0006611 - protein export from nucleus [Evidence IMP] [PMID 9323132]; GO_process: GO:0034501 - protein localization to kinetochore [Evidence IGI] [PMID 19139260]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0000055 - ribosomal large subunit export from nucleus [Evidence IMP] [PMID 11313466]; GO_process: GO:0006810 - transport [Evidence IEA]; exportin CRM1 4130603 CRM1 30035423 CRM1 Sugiyamaella lignohabitans exportin CRM1 XP_018738237.1 4127655 R 796027 CDS AWJ20_3405 30035424 complement(4131444..4133462) B 1 NC_031674.1 uncharacterized protein 4133462 30035424 AWJ20_3405 Sugiyamaella lignohabitans uncharacterized protein XP_018738238.1 4131444 R 796027 CDS AWJ20_3406 30035425 4135775..4137619 B 1 NC_031674.1 uncharacterized protein 4137619 30035425 AWJ20_3406 Sugiyamaella lignohabitans uncharacterized protein XP_018738239.1 4135775 D 796027 CDS AWJ20_3407 30035426 4137825..4138901 B 1 NC_031674.1 Metalloendopeptidase of the mitochondrial inner membrane; important for adaptive responses to various homeostatic insults and preservation of normal mitochondrial function under damage-eliciting conditions; involved in turnover of membrane-embedded proteins; mediates degradation of Cox1p in coa2 mutant cells; member of a family of predicted membrane-bound metallopeptidases in prokaryotes and higher eukaryotes; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IDA] [PMID 12963738]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004222 - metalloendopeptidase activity [Evidence IEA]; GO_function: GO:0004222 - metalloendopeptidase activity [Evidence IMP,ISS] [PMID 12963738]; GO_function: GO:0008237 - metallopeptidase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_process: GO:0006515 - misfolded or incompletely synthesized protein catabolic process [Evidence IMP] [PMID 12963738]; GO_process: GO:0006508 - proteolysis [Evidence IEA,IEA]; Oma1p 4138901 OMA1 30035426 OMA1 Sugiyamaella lignohabitans Oma1p XP_018738240.1 4137825 D 796027 CDS AWJ20_3408 30035427 4139093..4139905 B 1 NC_031674.1 Basic zinc-finger protein; similar to human and mouse Kin17 proteins which are chromatin-associated proteins involved in UV response and DNA replication; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA,IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; Rts2p 4139905 RTS2 30035427 RTS2 Sugiyamaella lignohabitans Rts2p XP_018738241.1 4139093 D 796027 CDS AWJ20_3409 30035428 4140873..4143464 B 1 NC_031674.1 Multifunctional lipase/hydrolase/phospholipase; triacylglycerol lipase, steryl ester hydrolase, and Ca2+-independent phospholipase A2; catalyzes acyl-CoA dependent acylation of LPA to PA; required with Tgl3p for timely bud formation; phosphorylated and activated by Cdc28p; TGL4 has a paralog, TGL5, that arose from the whole genome duplication; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0005811 - lipid particle [Evidence IEA,IEA]; GO_component: GO:0005811 - lipid particle [Evidence IDA] [PMID 14562095]; GO_component: GO:0005811 - lipid particle [Evidence IDA] [PMID 16135509]; GO_component: GO:0005811 - lipid particle [Evidence IDA] [PMID 16267052]; GO_component: GO:0005811 - lipid particle [Evidence IDA] [PMID 24390141]; GO_component: GO:0005811 - lipid particle [Evidence IDA] [PMID 24868093]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_function: GO:0047499 - calcium-independent phospholipase A2 activity [Evidence IDA,IMP] [PMID 20332534]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0042171 - lysophosphatidic acid acyltransferase activity [Evidence IDA] [PMID 20332534]; GO_function: GO:0004771 - sterol esterase activity [Evidence IDA,IMP] [PMID 20332534]; GO_function: GO:0004806 - triglyceride lipase activity [Evidence IEA]; GO_function: GO:0004806 - triglyceride lipase activity [Evidence IDA,IMP] [PMID 16135509]; GO_function: GO:0004806 - triglyceride lipase activity [Evidence IDA,IMP] [PMID 20332534]; GO_process: GO:0007114 - cell budding [Evidence IGI,IMP] [PMID 19150427]; GO_process: GO:0016042 - lipid catabolic process [Evidence IEA]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA,IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0006644 - phospholipid metabolic process [Evidence IMP] [PMID 20332534]; GO_process: GO:0030435 - sporulation resulting in formation of a cellular spore [Evidence IEA]; GO_process: GO:0019433 - triglyceride catabolic process [Evidence IGI,IMP] [PMID 16267052]; GO_process: GO:0006642 - triglyceride mobilization [Evidence IDA,IMP] [PMID 16135509]; Tgl4p 4143464 TGL4 30035428 TGL4 Sugiyamaella lignohabitans Tgl4p XP_018738242.1 4140873 D 796027 CDS AWJ20_3410 30035430 join(4145125..4145183,4145287..4145293,4145563..4146534) B 1 NC_031674.1 uncharacterized protein 4146534 30035430 AWJ20_3410 Sugiyamaella lignohabitans uncharacterized protein XP_018738243.1 4145125 D 796027 CDS AWJ20_3411 30035431 4147283..4148701 B 1 NC_031674.1 3-phosphoglycerate dehydrogenase; catalyzes the first step in serine and glycine biosynthesis; SER33 has a paralog, SER3, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0051287 - NAD binding [Evidence IEA]; GO_function: GO:0016597 - amino acid binding [Evidence IEA]; GO_function: GO:0048037 - cofactor binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor [Evidence IEA]; GO_function: GO:0004617 - phosphoglycerate dehydrogenase activity [Evidence IEA]; GO_function: GO:0004617 - phosphoglycerate dehydrogenase activity [Evidence IMP] [PMID 12525494]; GO_process: GO:0006564 - L-serine biosynthetic process [Evidence IEA]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0009070 - serine family amino acid biosynthetic process [Evidence IMP] [PMID 12525494]; phosphoglycerate dehydrogenase SER33 4148701 SER33 30035431 SER33 Sugiyamaella lignohabitans phosphoglycerate dehydrogenase SER33 XP_018738244.1 4147283 D 796027 CDS AWJ20_3412 30035432 4150879..4153812 B 1 NC_031674.1 Subunit of the 26S proteasome; substrate of the N-acetyltransferase Nat1p; protein abundance increases in response to DNA replication stress; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 15210724]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_component: GO:0000502 - proteasome complex [Evidence IEA,IEA]; GO_component: GO:0008540 - proteasome regulatory particle, base subcomplex [Evidence IDA] [PMID 9741626]; GO_component: GO:0034515 - proteasome storage granule [Evidence IDA] [PMID 18504300]; GO_function: GO:0004175 - endopeptidase activity [Evidence IMP] [PMID 7565784]; GO_function: GO:0030234 - enzyme regulator activity [Evidence IEA]; GO_function: GO:0030674 - protein binding, bridging [Evidence IPI] [PMID 12200120]; GO_process: GO:0043248 - proteasome assembly [Evidence IGI] [PMID 17911101]; GO_process: GO:0050790 - regulation of catalytic activity [Evidence IEA]; GO_process: GO:0042176 - regulation of protein catabolic process [Evidence IEA]; GO_process: GO:0006511 - ubiquitin-dependent protein catabolic process [Evidence IMP,IPI] [PMID 7565784]; proteasome regulatory particle base subunit RPN2 4153812 RPN2 30035432 RPN2 Sugiyamaella lignohabitans proteasome regulatory particle base subunit RPN2 XP_018738245.1 4150879 D 796027 CDS AWJ20_3413 30035433 complement(4153968..4155536) B 1 NC_031674.1 Nucleolar protein; component of the small subunit (SSU) processome containing the U3 snoRNA that is involved in processing of pre-18S rRNA; GO_component: GO:0030686 - 90S preribosome [Evidence IDA] [PMID 12150911]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 12068309]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 12150911]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0032040 - small-subunit processome [Evidence IDA] [PMID 12068309]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0000480 - endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 15489292]; GO_process: GO:0000480 - endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 15590835]; GO_process: GO:0000447 - endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 15489292]; GO_process: GO:0000447 - endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 15590835]; GO_process: GO:0000472 - endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 15489292]; GO_process: GO:0000472 - endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 15590835]; GO_process: GO:0000462 - maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 12068309]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; Utp7p 4155536 UTP7 30035433 UTP7 Sugiyamaella lignohabitans Utp7p XP_018738246.1 4153968 R 796027 CDS AWJ20_3414 30035434 complement(4155821..4157344) B 1 NC_031674.1 Protein that localizes to sites of polarized growth; required for selection and/or maintenance of polarized growth sites, may modulate signaling by the GTPases Cdc42p and Rho1p; contains LIM domains and has similarity to metazoan paxillin; relocalizes from bud neck to cytoplasm upon DNA replication stress; GO_component: GO:0005933 - cellular bud [Evidence IDA] [PMID 14562095]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 14562095]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 14767053]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 15282802]; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 14767053]; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 15282802]; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 22842922]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 23613772]; GO_component: GO:0000131 - incipient cellular bud site [Evidence IDA] [PMID 14767053]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 14767053]; GO_component: GO:0030427 - site of polarized growth [Evidence IDA] [PMID 23613772]; GO_function: GO:0005094 - Rho GDP-dissociation inhibitor activity [Evidence IGI,IPI] [PMID 15215315]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0030011 - maintenance of cell polarity [Evidence IMP] [PMID 14767053]; GO_process: GO:0035023 - regulation of Rho protein signal transduction [Evidence IGI,IPI] [PMID 15215315]; Pxl1p 4157344 PXL1 30035434 PXL1 Sugiyamaella lignohabitans Pxl1p XP_018738247.1 4155821 R 796027 CDS AWJ20_3415 30035435 4159690..4161015 B 1 NC_031674.1 uncharacterized protein 4161015 30035435 AWJ20_3415 Sugiyamaella lignohabitans uncharacterized protein XP_018738248.1 4159690 D 796027 CDS AWJ20_3416 30035436 complement(4161133..4161621) B 1 NC_031674.1 Integral membrane protein; localized to late Golgi vesicles along with the v-SNARE Tlg2p; required for asymmetric localization of Kar9p during mitosis; GFP-fusion protein localizes to the cytoplasm in a punctate pattern; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0030173 - integral component of Golgi membrane [Evidence IDA] [PMID 16107716]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0000022 - mitotic spindle elongation [Evidence IMP] [PMID 18194531]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IGI] [PMID 17178117]; Tvp38p 4161621 TVP38 30035436 TVP38 Sugiyamaella lignohabitans Tvp38p XP_018738249.1 4161133 R 796027 CDS AWJ20_3417 30035437 4164617..4165459 B 1 NC_031674.1 Peroxisomal 2,4-dienoyl-CoA reductase; auxiliary enzyme of fatty acid beta-oxidation; homodimeric enzyme required for growth and sporulation on petroselineate medium; expression induced during late sporulation and in the presence of oleate; GO_component: GO:0005782 - peroxisomal matrix [Evidence IDA] [PMID 9268358]; GO_component: GO:0005777 - peroxisome [Evidence IEA,IEA]; GO_function: GO:0008670 - 2,4-dienoyl-CoA reductase (NADPH) activity [Evidence IEA]; GO_function: GO:0008670 - 2,4-dienoyl-CoA reductase (NADPH) activity [Evidence IDA,ISS] [PMID 9268358]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_process: GO:0030437 - ascospore formation [Evidence IEP,IMP] [PMID 7969036]; GO_process: GO:0009062 - fatty acid catabolic process [Evidence IDA,ISS] [PMID 9268358]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; GO_process: GO:0030435 - sporulation resulting in formation of a cellular spore [Evidence IEA]; Sps19p 4165459 SPS19 30035437 SPS19 Sugiyamaella lignohabitans Sps19p XP_018738250.1 4164617 D 796027 CDS AWJ20_3418 30035438 4166117..4166437 B 1 NC_031674.1 uncharacterized protein 4166437 30035438 AWJ20_3418 Sugiyamaella lignohabitans uncharacterized protein XP_018738251.1 4166117 D 796027 CDS AWJ20_3419 30035439 4167242..4168300 B 1 NC_031674.1 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH), isozyme 1; involved in glycolysis and gluconeogenesis; tetramer that catalyzes the reaction of glyceraldehyde-3-phosphate to 1,3 bis-phosphoglycerate; detected in the cytoplasm and cell wall; protein abundance increases in response to DNA replication stress; GAPDH-derived antimicrobial peptides secreted by S. cerevisiae are active against a wide variety of wine-related yeasts and bateria; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11158358]; GO_component: GO:0009277 - fungal-type cell wall [Evidence IDA] [PMID 11158358]; GO_component: GO:0005811 - lipid particle [Evidence IDA] [PMID 10515935]; GO_component: GO:0005739 - mitochondrion [Evidence IDA,IPI] [PMID 16962558]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 16622836]; GO_function: GO:0051287 - NAD binding [Evidence IEA]; GO_function: GO:0050661 - NADP binding [Evidence IEA]; GO_function: GO:0004365 - glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity [Evidence IEA]; GO_function: GO:0004365 - glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity [Evidence IDA] [PMID 3905788]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0016620 - oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor [Evidence IEA]; GO_process: GO:0006094 - gluconeogenesis [Evidence IEP] [PMID 3905788]; GO_process: GO:0006006 - glucose metabolic process [Evidence IEA]; GO_process: GO:0006096 - glycolytic process [Evidence IEA,IEA]; GO_process: GO:0006096 - glycolytic process [Evidence IEP] [PMID 3905788]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) TDH1 4168300 TDH1 30035439 TDH1 Sugiyamaella lignohabitans glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) TDH1 XP_018738252.1 4167242 D 796027 CDS AWJ20_3420 30035441 complement(4167460..4167765) B 1 NC_031674.1 uncharacterized protein 4167765 30035441 AWJ20_3420 Sugiyamaella lignohabitans uncharacterized protein XP_018738253.1 4167460 R 796027 CDS AWJ20_3421 30035442 complement(4170930..4173104) B 1 NC_031674.1 uncharacterized protein 4173104 30035442 AWJ20_3421 Sugiyamaella lignohabitans uncharacterized protein XP_018738254.1 4170930 R 796027 CDS AWJ20_3422 30035443 4175914..4177395 B 1 NC_031674.1 uncharacterized protein 4177395 30035443 AWJ20_3422 Sugiyamaella lignohabitans uncharacterized protein XP_018738255.1 4175914 D 796027 CDS AWJ20_3423 30035444 4178792..4181428 B 1 NC_031674.1 uncharacterized protein 4181428 30035444 AWJ20_3423 Sugiyamaella lignohabitans uncharacterized protein XP_018738256.1 4178792 D 796027 CDS AWJ20_3424 30035445 4182736..4183659 B 1 NC_031674.1 uncharacterized protein 4183659 30035445 AWJ20_3424 Sugiyamaella lignohabitans uncharacterized protein XP_018738257.1 4182736 D 796027 CDS AWJ20_3425 30035446 4184166..4185410 B 1 NC_031674.1 Splicing factor that modulates turnover of branched RNAs by Dbr1p; interacts with spliceosomal components and branched RNA splicing products; enhances Dbr1p debranching in vitro; conserved protein with domain organization identical from yeast to human; N-terminal homology to Dbr1p N-terminus, but Dbr1p catalytic residues not conserved; relocalizes to the cytosol in response to hypoxia; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 22932476]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22932476]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0008047 - enzyme activator activity [Evidence IDA] [PMID 24919400]; GO_process: GO:0000398 - mRNA splicing, via spliceosome [Evidence IMP] [PMID 24919400]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; Drn1p 4185410 DRN1 30035446 DRN1 Sugiyamaella lignohabitans Drn1p XP_018738258.1 4184166 D 796027 CDS AWJ20_3426 30035447 4186772..4187533 B 1 NC_031674.1 amino acid starvation-responsive transcription factor GCN4 4187533 GCN4 30035447 GCN4 Sugiyamaella lignohabitans amino acid starvation-responsive transcription factor GCN4 XP_018738259.1 4186772 D 796027 CDS AWJ20_3427 30035448 4189698..4190918 B 1 NC_031674.1 Ferric reductase and cupric reductase; reduces siderophore-bound iron and oxidized copper prior to uptake by transporters; expression induced by low iron levels but not by low copper levels; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 8164662]; GO_function: GO:0052851 - ferric-chelate reductase (NADPH) activity [Evidence IEA]; GO_function: GO:0000293 - ferric-chelate reductase activity [Evidence IDA] [PMID 8164662]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_process: GO:0015677 - copper ion import [Evidence IDA] [PMID 9153234]; GO_process: GO:0006825 - copper ion transport [Evidence IEA]; GO_process: GO:0006811 - ion transport [Evidence IEA]; GO_process: GO:0055072 - iron ion homeostasis [Evidence IEA]; GO_process: GO:0006826 - iron ion transport [Evidence IDA] [PMID 8164662]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; Fre2p 4190918 FRE2 30035448 FRE2 Sugiyamaella lignohabitans Fre2p XP_018738260.1 4189698 D 796027 CDS AWJ20_3428 30035449 complement(4190986..4192602) B 1 NC_031674.1 Protein involved in nuclear export of the large ribosomal subunit; acts as a Crm1p-dependent adapter protein for export of nascent ribosomal subunits through the nuclear pore complex; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 10022925]; GO_component: GO:0022625 - cytosolic large ribosomal subunit [Evidence IDA] [PMID 10022925]; GO_component: GO:0005654 - nucleoplasm [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 23212245]; GO_function: GO:0043023 - ribosomal large subunit binding [Evidence IDA] [PMID 11105761]; GO_function: GO:0043023 - ribosomal large subunit binding [Evidence IDA] [PMID 17347149]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0000055 - ribosomal large subunit export from nucleus [Evidence IMP] [PMID 11086007]; GO_process: GO:0000055 - ribosomal large subunit export from nucleus [Evidence IGI] [PMID 23212245]; GO_process: GO:0006810 - transport [Evidence IEA]; ribosome-binding protein NMD3 4192602 NMD3 30035449 NMD3 Sugiyamaella lignohabitans ribosome-binding protein NMD3 XP_018738261.1 4190986 R 796027 CDS AWJ20_3429 30035450 4194196..4200171 B 1 NC_031674.1 Component of the CCR4-NOT1 core complex; this complex has multiple roles in regulating mRNA levels including regulation of transcription and destabilizing mRNAs by deadenylation; basal transcription factor; GO_component: GO:0030015 - CCR4-NOT core complex [Evidence IPI] [PMID 10490603]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11889048]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 7926748]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0000288 - nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay [Evidence IDA,IGI,IMP] [PMID 11889048]; GO_process: GO:0000289 - nuclear-transcribed mRNA poly(A) tail shortening [Evidence IDA] [PMID 11889048]; GO_process: GO:0032968 - positive regulation of transcription elongation from RNA polymerase II promoter [Evidence IDA,IPI] [PMID 21406554]; GO_process: GO:0007124 - pseudohyphal growth [Evidence IMP] [PMID 9055077]; GO_process: GO:0051726 - regulation of cell cycle [Evidence IMP] [PMID 2680756]; GO_process: GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence IPI] [PMID 10490603]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0000749 - response to pheromone involved in conjugation with cellular fusion [Evidence IMP] [PMID 2099190]; GO_process: GO:0006368 - transcription elongation from RNA polymerase II promoter [Evidence IGI,IMP] [PMID 11404327]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; CCR4-NOT core subunit CDC39 4200171 CDC39 30035450 CDC39 Sugiyamaella lignohabitans CCR4-NOT core subunit CDC39 XP_018738262.1 4194196 D 796027 CDS AWJ20_3430 30035452 4201238..4204306 B 1 NC_031674.1 uncharacterized protein 4204306 30035452 AWJ20_3430 Sugiyamaella lignohabitans uncharacterized protein XP_018738263.1 4201238 D 796027 CDS AWJ20_3431 30035453 complement(4204405..4205937) B 1 NC_031674.1 uncharacterized protein 4205937 30035453 AWJ20_3431 Sugiyamaella lignohabitans uncharacterized protein XP_018738264.1 4204405 R 796027 CDS AWJ20_3432 30035454 complement(4206344..4207510) B 1 NC_031674.1 Subunit of tRNA (1-methyladenosine) methyltransferase; required, along with Gcd10p, for the modification of the adenine at position 58 in tRNAs, especially tRNAi-Met; first identified as a negative regulator of GCN4 expression; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9851972]; GO_component: GO:0031515 - tRNA (m1A) methyltransferase complex [Evidence IEA]; GO_component: GO:0031515 - tRNA (m1A) methyltransferase complex [Evidence IDA,IPI] [PMID 10779558]; GO_function: GO:0008168 - methyltransferase activity [Evidence IEA]; GO_function: GO:0016429 - tRNA (adenine-N1-)-methyltransferase activity [Evidence IEA]; GO_function: GO:0016429 - tRNA (adenine-N1-)-methyltransferase activity [Evidence IDA,IMP] [PMID 10779558]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0032259 - methylation [Evidence IEA]; GO_process: GO:0030488 - tRNA methylation [Evidence IEA]; GO_process: GO:0030488 - tRNA methylation [Evidence IDA] [PMID 10779558]; GO_process: GO:0008033 - tRNA processing [Evidence IEA]; Gcd14p 4207510 GCD14 30035454 GCD14 Sugiyamaella lignohabitans Gcd14p XP_018738265.1 4206344 R 796027 CDS AWJ20_3433 30035455 4207946..4210264 B 1 NC_031674.1 Nucleolar protein required for export of tRNAs from the nucleus; also copurifies with the small subunit (SSU) processome containing the U3 snoRNA that is involved in processing of pre-18S rRNA; GO_component: GO:0030686 - 90S preribosome [Evidence IDA] [PMID 12150911]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 12068309]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0033553 - rDNA heterochromatin [Evidence IDA] [PMID 15489292]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0032040 - small-subunit processome [Evidence IDA] [PMID 12068309]; GO_component: GO:0034455 - t-UTP complex [Evidence IDA] [PMID 17515605]; GO_function: GO:0030515 - snoRNA binding [Evidence IPI] [PMID 12068309]; GO_function: GO:0000049 - tRNA binding [Evidence IDA] [PMID 19370060]; GO_process: GO:0000462 - maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 12068309]; GO_process: GO:0045943 - positive regulation of transcription from RNA polymerase I promoter [Evidence IMP] [PMID 15489292]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; GO_process: GO:0006409 - tRNA export from nucleus [Evidence IMP] [PMID 12794079]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Utp8p 4210264 UTP8 30035455 UTP8 Sugiyamaella lignohabitans Utp8p XP_018738266.1 4207946 D 796027 CDS AWJ20_3434 30035456 complement(4210390..4211703) B 1 NC_031674.1 uncharacterized protein 4211703 30035456 AWJ20_3434 Sugiyamaella lignohabitans uncharacterized protein XP_018738267.1 4210390 R 796027 CDS AWJ20_3435 30035457 join(4212610..4212640,4212778..4212849,4213259..4213743) B 1 NC_031674.1 Translation elongation factor 1 beta; stimulates nucleotide exchange to regenerate EF-1 alpha-GTP for the next elongation cycle; part of the EF-1 complex, which facilitates binding of aminoacyl-tRNA to the ribosomal A site; GO_component: GO:0005853 - eukaryotic translation elongation factor 1 complex [Evidence IEA]; GO_component: GO:0005853 - eukaryotic translation elongation factor 1 complex [Evidence IMP] [PMID 8420802]; GO_function: GO:0005085 - guanyl-nucleotide exchange factor activity [Evidence IDA] [PMID 17925388]; GO_function: GO:0003746 - translation elongation factor activity [Evidence IEA,IEA]; GO_process: GO:1990145 - maintenance of translational fidelity [Evidence IMP] [PMID 10409717]; GO_process: GO:0032232 - negative regulation of actin filament bundle assembly [Evidence IDA] [PMID 19095653]; GO_process: GO:0006449 - regulation of translational termination [Evidence IGI] [PMID 19545407]; GO_process: GO:0006412 - translation [Evidence IEA]; GO_process: GO:0006414 - translational elongation [Evidence IEA,IEA,IEA]; GO_process: GO:0006414 - translational elongation [Evidence IMP] [PMID 10409717]; translation elongation factor 1 subunit beta 4213743 EFB1 30035457 EFB1 Sugiyamaella lignohabitans translation elongation factor 1 subunit beta XP_018738268.1 4212610 D 796027 CDS AWJ20_3436 30035458 4213986..4215398 B 1 NC_031674.1 Nucleolar protein involved in pre-25S rRNA processing; also involved in biogenesis of large 60S ribosomal subunit; contains an RNA recognition motif (RRM); binds to Ebp2; similar to Nop13p and Nsr1p; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 11452019]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0030684 - preribosome [Evidence IDA] [PMID 17922018]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 23212245]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence ISS] [PMID 11452019]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0000463 - maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 11452019]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; Nop12p 4215398 NOP12 30035458 NOP12 Sugiyamaella lignohabitans Nop12p XP_018738269.1 4213986 D 796027 CDS AWJ20_3437 30035459 4216554..4217330 B 1 NC_031674.1 spherulin-1A 4217330 30035459 AWJ20_3437 Sugiyamaella lignohabitans spherulin-1A XP_018738270.1 4216554 D 796027 CDS AWJ20_3438 30035460 4217822..4219327 B 1 NC_031674.1 Cysteine aminopeptidase with homocysteine-thiolactonase activity; protects cells against homocysteine toxicity; has bleomycin hydrolase activity in vitro; transcription is regulated by galactose via Gal4p; orthologous to human BLMH; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 19061865]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 9584198]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0000978 - RNA polymerase II core promoter proximal region sequence-specific DNA binding [Evidence IDA] [PMID 8063738]; GO_function: GO:0004197 - cysteine-type endopeptidase activity [Evidence IEA]; GO_function: GO:0008234 - cysteine-type peptidase activity [Evidence IEA]; GO_function: GO:0008234 - cysteine-type peptidase activity [Evidence IDA] [PMID 8063738]; GO_function: GO:0003690 - double-stranded DNA binding [Evidence IDA] [PMID 9584198]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 21124907]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_function: GO:0003697 - single-stranded DNA binding [Evidence IDA] [PMID 9584198]; GO_process: GO:0043418 - homocysteine catabolic process [Evidence IDA,IMP] [PMID 16769724]; GO_process: GO:0000122 - negative regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 9374524]; GO_process: GO:0006508 - proteolysis [Evidence IEA,IEA]; GO_process: GO:0046677 - response to antibiotic [Evidence IDA] [PMID 8063738]; Lap3p 4219327 LAP3 30035460 LAP3 Sugiyamaella lignohabitans Lap3p XP_018738271.1 4217822 D 796027 CDS AWJ20_3439 30035461 4219732..4220595 B 1 NC_031674.1 NADPH-dependent alpha-keto amide reductase; reduces aromatic alpha-keto amides, aliphatic alpha-keto esters, and aromatic alpha-keto esters; member of the aldo-keto reductase (AKR) family; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 16622836]; GO_function: GO:0004032 - alditol:NADP+ 1-oxidoreductase activity [Evidence IDA,ISS] [PMID 11306085]; GO_function: GO:0004033 - aldo-keto reductase (NADP) activity [Evidence IDA] [PMID 17140678]; GO_function: GO:0051268 - alpha-keto amide reductase activity [Evidence IDA] [PMID 15564669]; GO_function: GO:0051269 - alpha-keto ester reductase activity [Evidence IDA] [PMID 15564669]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_process: GO:0043603 - cellular amide metabolic process [Evidence IDA] [PMID 15564669]; GO_process: GO:0006725 - cellular aromatic compound metabolic process [Evidence IDA] [PMID 16268655]; GO_process: GO:0042180 - cellular ketone metabolic process [Evidence IDA] [PMID 17140678]; GO_process: GO:0034599 - cellular response to oxidative stress [Evidence IGI] [PMID 17919749]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; aldo-keto reductase superfamily protein 4220595 30035461 AWJ20_3439 Sugiyamaella lignohabitans aldo-keto reductase superfamily protein XP_018738272.1 4219732 D 796027 CDS AWJ20_3440 30035463 complement(4220682..4224455) B 1 NC_031674.1 5-oxoprolinase; enzyme is ATP-dependent and functions as a dimer; similar to mouse Oplah gene; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_function: GO:0017168 - 5-oxoprolinase (ATP-hydrolyzing) activity [Evidence IEA]; GO_function: GO:0017168 - 5-oxoprolinase (ATP-hydrolyzing) activity [Evidence IDA,IMP] [PMID 20402795]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA,IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006749 - glutathione metabolic process [Evidence IMP] [PMID 20349993]; Oxp1p 4224455 OXP1 30035463 OXP1 Sugiyamaella lignohabitans Oxp1p XP_018738273.1 4220682 R 796027 CDS AWJ20_3441 30035464 complement(4225163..4226383) B 1 NC_031674.1 uncharacterized protein 4226383 30035464 AWJ20_3441 Sugiyamaella lignohabitans uncharacterized protein XP_018738274.1 4225163 R 796027 CDS AWJ20_3442 30035465 complement(4227023..4228255) B 1 NC_031674.1 WD-repeat protein involved in ribosome biogenesis; may interact with ribosomes; required for maturation and efficient intra-nuclear transport or pre-60S ribosomal subunits, localizes to the nucleolus; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 16221974]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IDA] [PMID 16702403]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0000027 - ribosomal large subunit assembly [Evidence IMP] [PMID 16221974]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; Rsa4p 4228255 RSA4 30035465 RSA4 Sugiyamaella lignohabitans Rsa4p XP_018738275.1 4227023 R 796027 CDS AWJ20_3443 30035466 4228896..4230626 B 1 NC_031674.1 RNA 5'-triphosphatase involved in mRNA 5' capping; subunit of the mRNA capping enzyme, which is a heterotetramer composed of a Cet1p homodimer and two molecules of the guanylyltransferase Ceg1p; Cet1p also has a role in regulation of RNA pol II pausing at promoter-proximal sites; interaction between Cet1p and Ceg1p is required for Ceg1p nuclear import; mammalian enzyme is a single bifunctional polypeptide; CET1 has a paralog, CTL1, that arose from the whole genome duplication; GO_component: GO:0031533 - mRNA cap methyltransferase complex [Evidence IGI,IPI] [PMID 9710603]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0004651 - polynucleotide 5'-phosphatase activity [Evidence IEA,IEA]; GO_function: GO:0004651 - polynucleotide 5'-phosphatase activity [Evidence IDA] [PMID 17707331]; GO_function: GO:0004651 - polynucleotide 5'-phosphatase activity [Evidence IDA] [PMID 9345280]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006370 - 7-methylguanosine mRNA capping [Evidence IEA]; GO_process: GO:0006370 - 7-methylguanosine mRNA capping [Evidence IPI] [PMID 9345280]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0098507 - polynucleotide 5' dephosphorylation [Evidence IEA,IEA]; GO_process: GO:0098501 - polynucleotide dephosphorylation [Evidence IDA] [PMID 9345280]; GO_process: GO:1900182 - positive regulation of protein localization to nucleus [Evidence IMP] [PMID 24205062]; GO_process: GO:0032968 - positive regulation of transcription elongation from RNA polymerase II promoter [Evidence IMP] [PMID 24172134]; Cet1p 4230626 CET1 30035466 CET1 Sugiyamaella lignohabitans Cet1p XP_018738276.1 4228896 D 796027 CDS AWJ20_3444 30035467 complement(4230778..4232595) B 1 NC_031674.1 Dihydroxyacetone kinase; required for detoxification of dihydroxyacetone (DHA); involved in stress adaptation; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004371 - glycerone kinase activity [Evidence IEA,IEA]; GO_function: GO:0004371 - glycerone kinase activity [Evidence IDA] [PMID 12401799]; GO_function: GO:0004371 - glycerone kinase activity [Evidence ISS] [PMID 9038161]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0050354 - triokinase activity [Evidence IEA]; GO_process: GO:0019588 - anaerobic glycerol catabolic process [Evidence IEA]; GO_process: GO:0097237 - cellular response to toxic substance [Evidence IMP] [PMID 12401799]; GO_process: GO:0019563 - glycerol catabolic process [Evidence ISS] [PMID 9038161]; GO_process: GO:0006071 - glycerol metabolic process [Evidence IEA,IEA]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; Dak2p 4232595 DAK2 30035467 DAK2 Sugiyamaella lignohabitans Dak2p XP_018738277.1 4230778 R 796027 CDS AWJ20_3445 30035468 complement(4235032..4237530) B 1 NC_031674.1 Zinc-finger transcription factor; involved in diauxic shift; in the presence of glucose, activates transcription of genes involved in growth and carbon metabolism; in nonfermentable carbon sources, activates transcription of genes involved in maintenance of cell wall integrity; relocalizes to the cytosol in response to hypoxia; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 22932476]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 16467472]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22932476]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9799362]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0000978 - RNA polymerase II core promoter proximal region sequence-specific DNA binding [Evidence IDA] [PMID 11839825]; GO_function: GO:0000978 - RNA polymerase II core promoter proximal region sequence-specific DNA binding [Evidence IDA,IMP] [PMID 16467472]; GO_function: GO:0001077 - RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription [Evidence IDA,IMP] [PMID 11839825]; GO_function: GO:0046872 - metal ion binding [Evidence IEA,IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19111667]; GO_process: GO:0071322 - cellular response to carbohydrate stimulus [Evidence IMP] [PMID 11839825]; GO_process: GO:0071322 - cellular response to carbohydrate stimulus [Evidence IMP] [PMID 16467472]; GO_process: GO:0060237 - regulation of fungal-type cell wall organization [Evidence IMP] [PMID 16467472]; GO_process: GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence IDA,IMP] [PMID 11839825]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Azf1p 4237530 AZF1 30035468 AZF1 Sugiyamaella lignohabitans Azf1p XP_018738278.1 4235032 R 796027 CDS AWJ20_3446 30035469 complement(4239519..4241219) B 1 NC_031674.1 chromatin-silencing transcriptional regulator TUP1 4241219 TUP1 30035469 TUP1 Sugiyamaella lignohabitans chromatin-silencing transcriptional regulator TUP1 XP_018738279.1 4239519 R 796027 CDS AWJ20_3447 30035470 complement(4242985..4244184) B 1 NC_031674.1 uncharacterized protein 4244184 30035470 AWJ20_3447 Sugiyamaella lignohabitans uncharacterized protein XP_018738280.1 4242985 R 796027 CDS AWJ20_3448 30035471 complement(4245247..4247199) B 1 NC_031674.1 Transcriptional regulator of pseudohyphal growth; protein with sequence similarity to S. pombe gti1+ (gluconate transport inducer 1) and C. albicans Wor1; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; Mit1p 4247199 MIT1 30035471 MIT1 Sugiyamaella lignohabitans Mit1p XP_018738281.1 4245247 R 796027 CDS AWJ20_3449 30035472 complement(4252164..4254206) B 1 NC_031674.1 ER protein with chaperone and co-chaperone activity; involved in retention of resident ER proteins; has a role in recognizing proteins targeted for ER-associated degradation (ERAD), member of the protein disulfide isomerase family; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IDA] [PMID 10545109]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0016853 - isomerase activity [Evidence IEA]; GO_function: GO:0005515 - protein binding [Evidence IPI] [PMID 16002399]; GO_function: GO:0003756 - protein disulfide isomerase activity [Evidence IEA]; GO_function: GO:0003756 - protein disulfide isomerase activity [Evidence IMP,ISS] [PMID 11157982]; GO_function: GO:0019153 - protein-disulfide reductase (glutathione) activity [Evidence IDA] [PMID 16002399]; GO_function: GO:0051082 - unfolded protein binding [Evidence IDA] [PMID 16002399]; GO_process: GO:0030433 - ER-associated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 12881414]; GO_process: GO:0045454 - cell redox homeostasis [Evidence IEA]; GO_process: GO:0006457 - protein folding [Evidence IEA]; GO_process: GO:0006621 - protein retention in ER lumen [Evidence IMP] [PMID 10545109]; protein disulfide isomerase EPS1 4254206 EPS1 30035472 EPS1 Sugiyamaella lignohabitans protein disulfide isomerase EPS1 XP_018738282.1 4252164 R 796027 CDS AWJ20_3450 30035474 4256502..4258790 B 1 NC_031674.1 WD repeat protein required for ubiquitin-mediated protein degradation; forms a complex with Cdc48p; plays a role in controlling cellular ubiquitin concentration; also promotes efficient NHEJ in postdiauxic/stationary phase; facilitates N-terminus-dependent proteolysis of centromeric histone H3 (Cse4p) for faithful chromosome segregation; protein increases in abundance and relocalizes from nucleus to nuclear periphery upon DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_function: GO:0043130 - ubiquitin binding [Evidence IDA,IMP] [PMID 16428438]; GO_function: GO:0043130 - ubiquitin binding [Evidence IDA] [PMID 21070969]; GO_process: GO:0006303 - double-strand break repair via nonhomologous end joining [Evidence IMP] [PMID 12399380]; GO_process: GO:0010992 - ubiquitin homeostasis [Evidence IMP] [PMID 18508771]; GO_process: GO:0006511 - ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 2111732]; Doa1p 4258790 DOA1 30035474 DOA1 Sugiyamaella lignohabitans Doa1p XP_018738283.1 4256502 D 796027 CDS AWJ20_3451 30035475 4259060..4259659 B 1 NC_031674.1 Small glutamine-rich tetratricopeptide repeat-containing protein alpha 4259659 SGTA 30035475 SGTA Sugiyamaella lignohabitans Small glutamine-rich tetratricopeptide repeat-containing protein alpha XP_018738284.1 4259060 D 796027 CDS AWJ20_3452 30035476 complement(4259788..4261332) B 1 NC_031674.1 uncharacterized protein 4261332 30035476 AWJ20_3452 Sugiyamaella lignohabitans uncharacterized protein XP_018738285.1 4259788 R 796027 CDS AWJ20_3453 30035477 complement(4261865..4262779) B 1 NC_031674.1 Sphinganine C4-hydroxylase; catalyses the conversion of sphinganine to phytosphingosine in sphingolipid biosyntheis; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IDA] [PMID 8868422]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0005506 - iron ion binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0000170 - sphingosine hydroxylase activity [Evidence IMP,ISS] [PMID 9556590]; GO_process: GO:0006633 - fatty acid biosynthetic process [Evidence IEA]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0030148 - sphingolipid biosynthetic process [Evidence IEA]; GO_process: GO:0006665 - sphingolipid metabolic process [Evidence IMP,ISS] [PMID 9556590]; sphingosine hydroxylase 4262779 SUR2 30035477 SUR2 Sugiyamaella lignohabitans sphingosine hydroxylase XP_018738286.1 4261865 R 796027 CDS AWJ20_3454 30035478 4263842..4264516 B 1 NC_031674.1 Protein involved in homologous recombination in mitochondria; required for recombination-dependent mtDNA partitioning; involved in stimulation of mitochondrial DNA replication in response to oxidative stress; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 12034822]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 12034822]; GO_function: GO:0003677 - DNA binding [Evidence IDA] [PMID 12198175]; GO_function: GO:0000150 - recombinase activity [Evidence IDA,IMP] [PMID 12198175]; GO_function: GO:0003697 - single-stranded DNA binding [Evidence IDA] [PMID 19729448]; GO_process: GO:0006310 - DNA recombination [Evidence IMP] [PMID 12198175]; GO_process: GO:0034599 - cellular response to oxidative stress [Evidence IMP] [PMID 19074198]; GO_process: GO:0000002 - mitochondrial genome maintenance [Evidence IDA] [PMID 12034822]; GO_process: GO:0000002 - mitochondrial genome maintenance [Evidence IGI] [PMID 12198175]; GO_process: GO:0090297 - positive regulation of mitochondrial DNA replication [Evidence IMP] [PMID 17116696]; GO_process: GO:0090297 - positive regulation of mitochondrial DNA replication [Evidence IMP] [PMID 19074198]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IPI] [PMID 9736700]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Mhr1p 4264516 MHR1 30035478 MHR1 Sugiyamaella lignohabitans Mhr1p XP_018738287.1 4263842 D 796027 CDS AWJ20_3455 30035479 complement(4264713..4267001) B 1 NC_031674.1 Subunit of the oligosaccharyltransferase complex of the ER lumen; complex catalyzes asparagine-linked glycosylation of newly synthesized proteins; forms a subcomplex with Ost3p and Ost4p and is directly involved in catalysis; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0008250 - oligosaccharyltransferase complex [Evidence IPI] [PMID 10358084]; GO_component: GO:0008250 - oligosaccharyltransferase complex [Evidence IPI] [PMID 16297388]; GO_component: GO:0008250 - oligosaccharyltransferase complex [Evidence IPI] [PMID 9405463]; GO_function: GO:0004579 - dolichyl-diphosphooligosaccharide-protein glycotransferase activity [Evidence IC] [PMID 9405463]; GO_function: GO:0004576 - oligosaccharyl transferase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA]; GO_process: GO:0006487 - protein N-linked glycosylation [Evidence IPI] [PMID 9405463]; GO_process: GO:0006486 - protein glycosylation [Evidence IEA,IEA]; dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3 4267001 STT3 30035479 STT3 Sugiyamaella lignohabitans dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3 XP_018738288.1 4264713 R 796027 CDS AWJ20_3456 30035480 complement(4268702..4270354) B 1 NC_031674.1 uncharacterized protein 4270354 30035480 AWJ20_3456 Sugiyamaella lignohabitans uncharacterized protein XP_018738289.1 4268702 R 796027 CDS AWJ20_3457 30035481 4273736..4275046 B 1 NC_031674.1 uncharacterized protein 4275046 30035481 AWJ20_3457 Sugiyamaella lignohabitans uncharacterized protein XP_018738290.1 4273736 D 796027 CDS AWJ20_3458 30035482 4275453..4276376 B 1 NC_031674.1 Mitochondrial ribosomal protein of the small subunit; MRP1 exhibits genetic interactions with PET122, encoding a COX3-specific translational activator, and with PET123, encoding a small subunit mitochondrial ribosomal protein; GO_component: GO:0005763 - mitochondrial small ribosomal subunit [Evidence IPI] [PMID 11278769]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IPI] [PMID 11278769]; GO_function: GO:0004784 - superoxide dismutase activity [Evidence IEA]; GO_process: GO:0032543 - mitochondrial translation [Evidence IC] [PMID 11278769]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; GO_process: GO:0006801 - superoxide metabolic process [Evidence IEA]; mitochondrial 37S ribosomal protein MRP1 4276376 MRP1 30035482 MRP1 Sugiyamaella lignohabitans mitochondrial 37S ribosomal protein MRP1 XP_018738291.1 4275453 D 796027 CDS AWJ20_3459 30035483 complement(4276675..4277733) B 1 NC_031674.1 Essential nuclear envelope integral membrane protein; identified as a suppressor of a conditional mutation in the major karyopherin, CRM1; homologous to and interacts with Brr6p, a nuclear envelope protein involved in nuclear export; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 15882446]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005635 - nuclear envelope [Evidence IDA] [PMID 15882446]; GO_component: GO:0031965 - nuclear membrane [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006406 - mRNA export from nucleus [Evidence IEA]; GO_process: GO:0006406 - mRNA export from nucleus [Evidence IMP] [PMID 15882446]; GO_process: GO:0051028 - mRNA transport [Evidence IEA]; GO_process: GO:0006998 - nuclear envelope organization [Evidence IEA]; GO_process: GO:0006998 - nuclear envelope organization [Evidence IMP] [PMID 15882446]; GO_process: GO:0006611 - protein export from nucleus [Evidence IEA]; GO_process: GO:0006611 - protein export from nucleus [Evidence IMP] [PMID 15882446]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Brl1p 4277733 BRL1 30035483 BRL1 Sugiyamaella lignohabitans Brl1p XP_018738292.1 4276675 R 796027 CDS AWJ20_3460 30035485 complement(4278231..4279790) B 1 NC_031674.1 Vacuolar aminopeptidase Y; processed to mature form by Prb1p; GO_component: GO:0000324 - fungal-type vacuole [Evidence IDA] [PMID 8175799]; GO_component: GO:0005773 - vacuole [Evidence IEA,IEA]; GO_function: GO:0004177 - aminopeptidase activity [Evidence IEA]; GO_function: GO:0004177 - aminopeptidase activity [Evidence IDA] [PMID 8175799]; GO_function: GO:0004177 - aminopeptidase activity [Evidence IMP] [PMID 8175800]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0008237 - metallopeptidase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA,IEA]; GO_process: GO:0006508 - proteolysis [Evidence IEA,IEA]; GO_process: GO:0007039 - vacuolar protein catabolic process [Evidence IDA] [PMID 8175799]; Ape3p 4279790 APE3 30035485 APE3 Sugiyamaella lignohabitans Ape3p XP_018738293.1 4278231 R 796027 CDS AWJ20_3461 30035486 complement(4280267..4281550) B 1 NC_031674.1 Nuclear protein that inhibits replication of Brome mosaic virus; S. cerevisiae is a model system for studying replication of positive-strand RNA viruses in their natural hosts; deletion increases stop codon readthrough; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 10684247]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006417 - regulation of translation [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006415 - translational termination [Evidence IGI,IMP] [PMID 20630870]; Ett1p 4281550 ETT1 30035486 ETT1 Sugiyamaella lignohabitans Ett1p XP_018738294.1 4280267 R 796027 CDS AWJ20_3462 30035487 4282069..4283556 B 1 NC_031674.1 S-adenosyl-L-methionine uroporphyrinogen III transmethylase; involved in the biosynthesis of siroheme, a prosthetic group used by sulfite reductase; required for sulfate assimilation and methionine biosynthesis; GO_component: GO:0005622 - intracellular [Evidence IC] [PMID 10051442]; GO_component: GO:0005622 - intracellular [Evidence IC] [PMID 9003798]; GO_function: GO:0008168 - methyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0043115 - precorrin-2 dehydrogenase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0004851 - uroporphyrin-III C-methyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0004851 - uroporphyrin-III C-methyltransferase activity [Evidence IDA] [PMID 10051442]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0009086 - methionine biosynthetic process [Evidence IEA]; GO_process: GO:0009086 - methionine biosynthetic process [Evidence IMP] [PMID 1101032]; GO_process: GO:0032259 - methylation [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; GO_process: GO:0006779 - porphyrin-containing compound biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0019354 - siroheme biosynthetic process [Evidence IEA]; GO_process: GO:0019354 - siroheme biosynthetic process [Evidence IGI,ISS] [PMID 9003798]; GO_process: GO:0000103 - sulfate assimilation [Evidence NAS] [PMID 9003798]; uroporphyrinogen-III C-methyltransferase 4283556 MET1 30035487 MET1 Sugiyamaella lignohabitans uroporphyrinogen-III C-methyltransferase XP_018738295.1 4282069 D 796027 CDS AWJ20_3463 30035488 4283955..4285034 B 1 NC_031674.1 uncharacterized protein 4285034 30035488 AWJ20_3463 Sugiyamaella lignohabitans uncharacterized protein XP_018738296.1 4283955 D 796027 CDS AWJ20_3464 30035489 complement(join(4285339..4285695,4286129..4286151,4287659..4287662)) B 1 NC_031674.1 AN1-type zinc finger hypothetical protein; may protect cells from trivalent metalloid induced proteotoxicity; contains a PACE promoter element, a transcriptional profile similar to CUZ1 and RPN2, and decreased expression in an RPN4 mutant; induced by nitrogen limitation and weak acid; ortholog of human AIRAP, which stimulates proteasome activity in response to arsenic; protein abundance increases in response to DNA replication stress; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0071243 - cellular response to arsenic-containing substance [Evidence IMP] [PMID 24297164]; Tmc1p 4287662 TMC1 30035489 TMC1 Sugiyamaella lignohabitans Tmc1p XP_018738297.1 4285339 R 796027 CDS AWJ20_3465 30035490 4289001..4290455 B 1 NC_031674.1 Protein involved in cell separation during budding; one of two S. cerevisiae homologs (Sds23p and Sds24p) of the S. pombe Sds23 protein, which is implicated in APC/cyclosome regulation; may play an indirect role in fluid-phase endocytosis; protein abundance increases in response to DNA replication stress; SDS24 has a paralog, SDS23, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0030554 - adenyl nucleotide binding [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0000920 - cytokinetic cell separation [Evidence IGI] [PMID 16041152]; GO_process: GO:0006897 - endocytosis [Evidence IMP] [PMID 11378903]; Sds24p 4290455 SDS24 30035490 SDS24 Sugiyamaella lignohabitans Sds24p XP_018738298.1 4289001 D 796027 CDS AWJ20_3466 30035491 4290889..4292499 B 1 NC_031674.1 DnaJ-like chaperone required for nuclear membrane fusion during mating; localizes to the ER membrane; exhibits genetic interactions with KAR2; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 9148890]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0031965 - nuclear membrane [Evidence IEA]; GO_component: GO:0042175 - nuclear outer membrane-endoplasmic reticulum membrane network [Evidence IDA] [PMID 15282802]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_function: GO:0051087 - chaperone binding [Evidence ISS] [PMID 9148890]; GO_function: GO:0051082 - unfolded protein binding [Evidence ISS] [PMID 9148890]; GO_process: GO:0030433 - ER-associated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 11381090]; GO_process: GO:0000742 - karyogamy involved in conjugation with cellular fusion [Evidence IGI,IMP] [PMID 10069807]; GO_process: GO:0034975 - protein folding in endoplasmic reticulum [Evidence IGI] [PMID 9817751]; Jem1p 4292499 JEM1 30035491 JEM1 Sugiyamaella lignohabitans Jem1p XP_018738299.1 4290889 D 796027 CDS AWJ20_3467 30035492 4295359..4297095 B 1 NC_031674.1 hypothetical protein; contains FYVE domain; similar to Fab1 and Vps27; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA,IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; Pib2p 4297095 PIB2 30035492 PIB2 Sugiyamaella lignohabitans Pib2p XP_018738300.1 4295359 D 796027 CDS AWJ20_3468 30035493 complement(4297360..4298058) B 1 NC_031674.1 Component of the Rix1 complex and possibly pre-replicative complexes; required for processing of ITS2 sequences from 35S pre-rRNA; component of the pre-60S ribosomal particle with the dynein-related AAA-type ATPase Mdn1p; required for pre-replicative complex (pre-RC) formation and maintenance during DNA replication licensing; relocalizes to the cytosol in response to hypoxia; essential gene; GO_component: GO:0097344 - Rix1 complex [Evidence IDA] [PMID 14759368]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 22932476]; GO_component: GO:0005654 - nucleoplasm [Evidence IDA] [PMID 15528184]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14690591]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22932476]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 23212245]; GO_function: GO:0003682 - chromatin binding [Evidence IDA] [PMID 22421151]; GO_process: GO:0006267 - pre-replicative complex assembly involved in nuclear cell cycle DNA replication [Evidence IMP] [PMID 22421151]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0006364 - rRNA processing [Evidence IMP] [PMID 12089522]; GO_process: GO:0006364 - rRNA processing [Evidence IMP] [PMID 14759368]; GO_process: GO:0030174 - regulation of DNA-dependent DNA replication initiation [Evidence IMP] [PMID 22421151]; GO_process: GO:0000027 - ribosomal large subunit assembly [Evidence IMP] [PMID 15528184]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; Ipi1p 4298058 IPI1 30035493 IPI1 Sugiyamaella lignohabitans Ipi1p XP_018738301.1 4297360 R 796027 CDS AWJ20_3469 30035494 4298807..4300642 B 1 NC_031674.1 Component of the ribosome quality control complex (RQC); RQC (Rqc1p-Rkr1p-Tae2p-Cdc48p-Npl4p-Ufd1p) is a ribosome-bound complex required for the degradation of polypeptides arising from stalled translation; required along with Rkr1p for recruitment of the Cdc48p-Npl4p-Ufd1p AAA ATPase complex to the RQC; GO_component: GO:1990112 - RQC complex [Evidence IDA] [PMID 23178123]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0022625 - cytosolic large ribosomal subunit [Evidence IDA] [PMID 23479637]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:1990116 - ribosome-associated ubiquitin-dependent protein catabolic process [Evidence IGI,IMP] [PMID 23479637]; Rqc1p 4300642 RQC1 30035494 RQC1 Sugiyamaella lignohabitans Rqc1p XP_018738302.1 4298807 D 796027 CDS AWJ20_3470 30035496 4301375..4302577 B 1 NC_031674.1 Cystathionine gamma-lyase; catalyzes one of the two reactions involved in the transsulfuration pathway that yields cysteine from homocysteine with the intermediary formation of cystathionine; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_function: GO:0080146 - L-cysteine desulfhydrase activity [Evidence IEA]; GO_function: GO:0044540 - L-cystine L-cysteine-lyase (deaminating) [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0004123 - cystathionine gamma-lyase activity [Evidence IEA]; GO_function: GO:0004123 - cystathionine gamma-lyase activity [Evidence IMP] [PMID 10509018]; GO_function: GO:0004123 - cystathionine gamma-lyase activity [Evidence IDA] [PMID 1577698]; GO_function: GO:0004123 - cystathionine gamma-lyase activity [Evidence IMP] [PMID 8366024]; GO_function: GO:0016829 - lyase activity [Evidence IEA]; GO_function: GO:0030170 - pyridoxal phosphate binding [Evidence IEA]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0019344 - cysteine biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0019344 - cysteine biosynthetic process [Evidence IMP] [PMID 8366024]; GO_process: GO:0019343 - cysteine biosynthetic process via cystathionine [Evidence IMP] [PMID 10509018]; GO_process: GO:0019346 - transsulfuration [Evidence IMP] [PMID 8366024]; cystathionine gamma-lyase CYS3 4302577 CYS3 30035496 CYS3 Sugiyamaella lignohabitans cystathionine gamma-lyase CYS3 XP_018738303.1 4301375 D 796027 CDS AWJ20_3471 30035497 complement(4302835..4303587) B 1 NC_031674.1 putative GPI anchored protein 4303587 30035497 AWJ20_3471 Sugiyamaella lignohabitans putative GPI anchored protein XP_018738304.1 4302835 R 796027 CDS AWJ20_3472 30035498 complement(4305240..4306496) B 1 NC_031674.1 Nucleotide exchange factor for the ER lumenal Hsp70 chaperone Kar2p; required for protein translocation into the endoplasmic reticulum (ER); homolog of Yarrowia lipolytica SLS1; GrpE-like protein; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IPI] [PMID 10958688]; GO_component: GO:0005788 - endoplasmic reticulum lumen [Evidence IEA]; GO_function: GO:0000774 - adenyl-nucleotide exchange factor activity [Evidence IDA,IPI] [PMID 10958688]; GO_process: GO:0006616 - SRP-dependent cotranslational protein targeting to membrane, translocation [Evidence IGI,IMP] [PMID 10958688]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Sil1p 4306496 SIL1 30035498 SIL1 Sugiyamaella lignohabitans Sil1p XP_018738305.1 4305240 R 796027 CDS AWJ20_3473 30035499 complement(4307538..4307984) B 1 NC_031674.1 Protein with a possible role in phospholipid biosynthesis; null mutant displays an inositol-excreting phenotype that is suppressed by exogenous choline; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006020 - inositol metabolic process [Evidence IMP] [PMID 16582425]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0008654 - phospholipid biosynthetic process [Evidence IEA]; Opi10p 4307984 OPI10 30035499 OPI10 Sugiyamaella lignohabitans Opi10p XP_018738306.1 4307538 R 796027 CDS AWJ20_3474 30035500 4308760..4309383 B 1 NC_031674.1 Protein with similarity to Emp24p and Erv25p; member of the p24 family involved in ER to Golgi transport; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 10359606]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IEA]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence ISA] [PMID 10359606]; Erp3p 4309383 ERP3 30035500 ERP3 Sugiyamaella lignohabitans Erp3p XP_018738307.1 4308760 D 796027 CDS AWJ20_3475 30035501 complement(4309538..4312180) B 1 NC_031674.1 Subunit of the SWI/SNF chromatin remodeling complex; SWI/SNF regulates transcription by remodeling chromosomes; contains SANT domain that is required for SWI/SNF assembly; is essential for displacement of histone H2A-H2B dimers during ATP-dependent remodeling; required for transcription of many genes, including ADH1, ADH2, GAL1, HO, INO1 and SUC2; relocates to the cytosol under hypoxic conditions; GO_component: GO:0016514 - SWI/SNF complex [Evidence IDA] [PMID 18644858]; GO_component: GO:0016514 - SWI/SNF complex [Evidence IDA] [PMID 8016655]; GO_component: GO:0016514 - SWI/SNF complex [Evidence IDA] [PMID 8127913]; GO_component: GO:0016514 - SWI/SNF complex [Evidence IDA,IMP] [PMID 8159677]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 22932476]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 1339306]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22932476]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0003677 - DNA binding [Evidence IDA,IMP] [PMID 16461455]; GO_function: GO:0015616 - DNA translocase activity [Evidence IDA] [PMID 17188033]; GO_function: GO:0003682 - chromatin binding [Evidence IEA]; GO_function: GO:0042393 - histone binding [Evidence IPI] [PMID 17496903]; GO_process: GO:0043044 - ATP-dependent chromatin remodeling [Evidence IDA] [PMID 8016655]; GO_process: GO:0000436 - carbon catabolite activation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 8221926]; GO_process: GO:0044109 - cellular alcohol catabolic process [Evidence IMP] [PMID 1339306]; GO_process: GO:0031496 - positive regulation of mating type switching [Evidence IMP] [PMID 6436497]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 1339306]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 3542227]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0005987 - sucrose catabolic process [Evidence IMP] [PMID 1339306]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Swi3p 4312180 SWI3 30035501 SWI3 Sugiyamaella lignohabitans Swi3p XP_018738308.1 4309538 R 796027 CDS AWJ20_3476 30035502 4315434..4315853 B 1 NC_031674.1 uncharacterized protein 4315853 30035502 AWJ20_3476 Sugiyamaella lignohabitans uncharacterized protein XP_018738309.1 4315434 D 796027 CDS AWJ20_3477 30035503 complement(4316056..4318830) B 1 NC_031674.1 protein kinase NNK1 4318830 NNK1 30035503 NNK1 Sugiyamaella lignohabitans protein kinase NNK1 XP_018738310.1 4316056 R 796027 CDS AWJ20_3478 30035504 4321972..4325091 B 1 NC_031674.1 protein phosphatase regulator BUD14 4325091 BUD14 30035504 BUD14 Sugiyamaella lignohabitans protein phosphatase regulator BUD14 XP_018738311.1 4321972 D 796027 CDS AWJ20_3479 30035505 4325981..4328752 B 1 NC_031674.1 Transportin or cytosolic karyopherin beta 2; functions in the rg-nuclear localization signal-mediated nuclear import/reimport of mRNA-binding proteins Nab2p and Hrp1p; regulates asymmetric protein synthesis in daughter cells during mitosis; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 19198597]; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 19198597]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 8849456]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_function: GO:0008139 - nuclear localization sequence binding [Evidence IPI] [PMID 9488461]; GO_process: GO:0010458 - exit from mitosis [Evidence IMP] [PMID 12524331]; GO_process: GO:0006609 - mRNA-binding (hnRNP) protein import into nucleus [Evidence IMP,IPI] [PMID 8849456]; GO_process: GO:0006609 - mRNA-binding (hnRNP) protein import into nucleus [Evidence IDA] [PMID 9488461]; GO_process: GO:0006606 - protein import into nucleus [Evidence IMP,IPI] [PMID 8849456]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0042991 - transcription factor import into nucleus [Evidence IMP,IPI] [PMID 19366694]; GO_process: GO:0006810 - transport [Evidence IEA]; Kap104p 4328752 KAP104 30035505 KAP104 Sugiyamaella lignohabitans Kap104p XP_018738312.1 4325981 D 796027 CDS AWJ20_3480 30035507 complement(4331081..4331650) B 1 NC_031674.1 Ribosomal 60S subunit protein L9B; homologous to mammalian ribosomal protein L9 and bacterial L6; RPL9B has a paralog, RPL9A, that arose from a single-locus duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0022625 - cytosolic large ribosomal subunit [Evidence IDA] [PMID 18782943]; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA,IEA]; GO_function: GO:0019843 - rRNA binding [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IDA] [PMID 18782943]; GO_process: GO:0002181 - cytoplasmic translation [Evidence IDA] [PMID 18782943]; GO_process: GO:0006412 - translation [Evidence IEA]; ribosomal 60S subunit protein L9B 4331650 RPL9B 30035507 RPL9B Sugiyamaella lignohabitans ribosomal 60S subunit protein L9B XP_018738313.1 4331081 R 796027 CDS AWJ20_3481 30035508 4333083..4335317 B 1 NC_031674.1 Protein O-mannosyltransferase of the ER membrane; transfers mannose residues from dolichyl phosphate-D-mannose to protein serine/threonine residues; involved in ER quality control; acts in a complex with Pmt1p, can instead interact with Pmt5p; antifungal drug target; PMT2 has a paralog, PMT3, that arose from the whole genome duplication; GO_component: GO:0097582 - dolichyl-phosphate-mannose-protein mannosyltransferase Pmt1p-Pmt2p dimer complex [Evidence IDA] [PMID 12551906]; GO_component: GO:0097582 - dolichyl-phosphate-mannose-protein mannosyltransferase Pmt1p-Pmt2p dimer complex [Evidence IPI] [PMID 21956107]; GO_component: GO:0097582 - dolichyl-phosphate-mannose-protein mannosyltransferase Pmt1p-Pmt2p dimer complex [Evidence IPI] [PMID 8543034]; GO_component: GO:0097584 - dolichyl-phosphate-mannose-protein mannosyltransferase Pmt5p-Pmt2p dimer complex [Evidence IDA] [PMID 12551906]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_function: GO:0004169 - dolichyl-phosphate-mannose-protein mannosyltransferase activity [Evidence IEA]; GO_function: GO:0004169 - dolichyl-phosphate-mannose-protein mannosyltransferase activity [Evidence IDA,IGI] [PMID 21956107]; GO_function: GO:0004169 - dolichyl-phosphate-mannose-protein mannosyltransferase activity [Evidence IGI,IMP,ISA] [PMID 7852348]; GO_function: GO:0004169 - dolichyl-phosphate-mannose-protein mannosyltransferase activity [Evidence IGI,IMP] [PMID 8543034]; GO_function: GO:0000030 - mannosyltransferase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA]; GO_process: GO:0071712 - ER-associated misfolded protein catabolic process [Evidence IMP] [PMID 18182384]; GO_process: GO:0071712 - ER-associated misfolded protein catabolic process [Evidence IGI] [PMID 21147851]; GO_process: GO:0006493 - protein O-linked glycosylation [Evidence IEA]; GO_process: GO:0006493 - protein O-linked glycosylation [Evidence IMP] [PMID 9184828]; GO_process: GO:0035269 - protein O-linked mannosylation [Evidence IMP] [PMID 18182384]; GO_process: GO:0035269 - protein O-linked mannosylation [Evidence IGI] [PMID 21231968]; GO_process: GO:0035269 - protein O-linked mannosylation [Evidence IGI,IMP] [PMID 7852348]; GO_process: GO:0035269 - protein O-linked mannosylation [Evidence IGI,IMP] [PMID 8543034]; GO_process: GO:0032527 - protein exit from endoplasmic reticulum [Evidence IGI] [PMID 21147851]; GO_process: GO:0006486 - protein glycosylation [Evidence IEA]; GO_process: GO:1900101 - regulation of endoplasmic reticulum unfolded protein response [Evidence IGI] [PMID 21231968]; GO_process: GO:1900101 - regulation of endoplasmic reticulum unfolded protein response [Evidence IGI,IMP] [PMID 23704572]; dolichyl-phosphate-mannose-protein mannosyltransferase PMT2 4335317 PMT2 30035508 PMT2 Sugiyamaella lignohabitans dolichyl-phosphate-mannose-protein mannosyltransferase PMT2 XP_018738314.1 4333083 D 796027 CDS AWJ20_3482 30035509 complement(4335459..4337474) B 1 NC_031674.1 uncharacterized protein 4337474 30035509 AWJ20_3482 Sugiyamaella lignohabitans uncharacterized protein XP_018738315.1 4335459 R 796027 CDS AWJ20_3483 30035510 complement(4337968..4340217) B 1 NC_031674.1 Subunit of Elongator complex; Elongator is required for modification of wobble nucleosides in tRNA; target of Kluyveromyces lactis zymocin; GO_component: GO:0033588 - Elongator holoenzyme complex [Evidence IDA] [PMID 11689709]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 12139626]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 12139626]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0032447 - protein urmylation [Evidence IMP] [PMID 14551258]; GO_process: GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 11689709]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0002098 - tRNA wobble uridine modification [Evidence IMP] [PMID 18755837]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Elongator subunit ELP2 4340217 ELP2 30035510 ELP2 Sugiyamaella lignohabitans Elongator subunit ELP2 XP_018738316.1 4337968 R 796027 CDS AWJ20_3484 30035511 complement(4340495..4342285) B 1 NC_031674.1 Dihydroxyacid dehydratase; catalyzes third step in the common pathway leading to biosynthesis of branched-chain amino acids; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0004160 - dihydroxy-acid dehydratase activity [Evidence IEA,IEA]; GO_function: GO:0004160 - dihydroxy-acid dehydratase activity [Evidence IMP] [PMID 14124940]; GO_function: GO:0051536 - iron-sulfur cluster binding [Evidence IEA]; GO_function: GO:0016829 - lyase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_process: GO:0009082 - branched-chain amino acid biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0009082 - branched-chain amino acid biosynthetic process [Evidence IMP] [PMID 14124940]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0009097 - isoleucine biosynthetic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0009099 - valine biosynthetic process [Evidence IEA]; dihydroxy-acid dehydratase ILV3 4342285 ILV3 30035511 ILV3 Sugiyamaella lignohabitans dihydroxy-acid dehydratase ILV3 XP_018738317.1 4340495 R 796027 CDS AWJ20_3485 30035512 4340640..4341221 B 1 NC_031674.1 uncharacterized protein 4341221 30035512 AWJ20_3485 Sugiyamaella lignohabitans uncharacterized protein XP_018738318.1 4340640 D 796027 CDS AWJ20_3486 30035513 complement(4343326..4343952) B 1 NC_031674.1 Protein required for ethanol metabolism; induced by heat shock and localized to the inner mitochondrial membrane; homologous to mammalian peroxisomal membrane protein Mpv17; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IDA] [PMID 15189984]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IDA] [PMID 23045398]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006067 - ethanol metabolic process [Evidence IMP] [PMID 15189984]; Sym1p 4343952 SYM1 30035513 SYM1 Sugiyamaella lignohabitans Sym1p XP_018738319.1 4343326 R 796027 CDS AWJ20_3487 30035514 4347090..4348013 B 1 NC_031674.1 lipid-binding protein PIL1 4348013 PIL1 30035514 PIL1 Sugiyamaella lignohabitans lipid-binding protein PIL1 XP_018738320.1 4347090 D 796027 CDS AWJ20_3488 30035515 complement(4348932..4350227) B 1 NC_031674.1 Catalytic subunit of the Hat1p-Hat2p histone acetyltransferase complex; uses the cofactor acetyl coenzyme A to acetylate free nuclear and cytoplasmic histone H4; involved in telomeric silencing and DNA double-strand break repair; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 8858151]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 9575221]; GO_component: GO:0000123 - histone acetyltransferase complex [Evidence IEA]; GO_component: GO:0000123 - histone acetyltransferase complex [Evidence IPI] [PMID 14761951]; GO_component: GO:0000123 - histone acetyltransferase complex [Evidence IDA,IPI] [PMID 8858151]; GO_component: GO:0000123 - histone acetyltransferase complex [Evidence IDA] [PMID 9575221]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14761951]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9575221]; GO_function: GO:0010485 - H4 histone acetyltransferase activity [Evidence IDA] [PMID 8858151]; GO_function: GO:0008080 - N-acetyltransferase activity [Evidence IEA]; GO_function: GO:0003682 - chromatin binding [Evidence IDA] [PMID 16612003]; GO_function: GO:0004402 - histone acetyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0004402 - histone acetyltransferase activity [Evidence IDA,IMP] [PMID 7559580]; GO_function: GO:0004402 - histone acetyltransferase activity [Evidence IDA,IMP] [PMID 8858151]; GO_function: GO:0004402 - histone acetyltransferase activity [Evidence IMP] [PMID 9575221]; GO_function: GO:0042393 - histone binding [Evidence IEA]; GO_function: GO:0042393 - histone binding [Evidence IDA] [PMID 8858151]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016746 - transferase activity, transferring acyl groups [Evidence IEA]; GO_process: GO:0006281 - DNA repair [Evidence IEA]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0016568 - chromatin modification [Evidence IEA,IEA]; GO_process: GO:0006348 - chromatin silencing at telomere [Evidence IEA]; GO_process: GO:0006348 - chromatin silencing at telomere [Evidence IGI] [PMID 10982821]; GO_process: GO:0006348 - chromatin silencing at telomere [Evidence IGI] [PMID 15099519]; GO_process: GO:0016573 - histone acetylation [Evidence IEA]; GO_process: GO:0016573 - histone acetylation [Evidence IDA,IMP] [PMID 7559580]; GO_process: GO:0016573 - histone acetylation [Evidence IDA,IMP] [PMID 8858151]; GO_process: GO:0016573 - histone acetylation [Evidence IDA,IMP] [PMID 9575221]; Hat1p 4350227 HAT1 30035515 HAT1 Sugiyamaella lignohabitans Hat1p XP_018738321.1 4348932 R 796027 CDS AWJ20_3489 30035516 complement(4350993..4355345) B 1 NC_031674.1 uncharacterized protein 4355345 30035516 AWJ20_3489 Sugiyamaella lignohabitans uncharacterized protein XP_018738322.1 4350993 R 796027 CDS AWJ20_3490 30035518 join(4356996..4357681,4358616..4359699) B 1 NC_031674.1 Processivity factor; required for the ubiquitination activity of the anaphase promoting complex (APC), mediates the activity of the APC by contributing to substrate recognition; involved in cyclin proteolysis; contains a conserved DOC1 homology domain; GO_component: GO:0005680 - anaphase-promoting complex [Evidence IDA] [PMID 9469814]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0030234 - enzyme regulator activity [Evidence IDA] [PMID 12402045]; GO_function: GO:0090302 - mitotic anaphase-promoting complex activity [Evidence IDA] [PMID 12402045]; GO_process: GO:0007092 - activation of mitotic anaphase-promoting complex activity [Evidence IDA,IMP] [PMID 12402045]; GO_process: GO:0031145 - anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process [Evidence IDA,IMP] [PMID 12402045]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0031497 - chromatin assembly [Evidence IGI] [PMID 12399376]; GO_process: GO:0008054 - cyclin catabolic process [Evidence IMP] [PMID 9348530]; GO_process: GO:0007067 - mitotic nuclear division [Evidence IEA]; GO_process: GO:0016567 - protein ubiquitination [Evidence IEA]; anaphase promoting complex subunit DOC1 4359699 DOC1 30035518 DOC1 Sugiyamaella lignohabitans anaphase promoting complex subunit DOC1 XP_018738323.1 4356996 D 796027 CDS AWJ20_3491 30035519 4364136..4365350 B 1 NC_031674.1 Alpha-1,2-mannosyltransferase; involved in O- and N-linked protein glycosylation; type II membrane protein; member of the KRE2/MNT1 mannosyltransferase family; relocalizes from vacuole to cytoplasm upon DNA replication stress; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0005794 - Golgi apparatus [Evidence IDA] [PMID 8631921]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 22842922]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_function: GO:0000026 - alpha-1,2-mannosyltransferase activity [Evidence IDA] [PMID 9020857]; GO_function: GO:0000026 - alpha-1,2-mannosyltransferase activity [Evidence IMP] [PMID 9182588]; GO_function: GO:0000030 - mannosyltransferase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA]; GO_process: GO:0097502 - mannosylation [Evidence IEA]; GO_process: GO:0006487 - protein N-linked glycosylation [Evidence IGI] [PMID 9182588]; GO_process: GO:0006493 - protein O-linked glycosylation [Evidence IGI] [PMID 9182588]; GO_process: GO:0006486 - protein glycosylation [Evidence IEA,IEA]; alpha-1,2-mannosyltransferase KTR1 4365350 KTR1 30035519 KTR1 Sugiyamaella lignohabitans alpha-1,2-mannosyltransferase KTR1 XP_018738324.1 4364136 D 796027 CDS AWJ20_3492 30035520 complement(4366317..4367039) B 1 NC_031674.1 uncharacterized protein 4367039 30035520 AWJ20_3492 Sugiyamaella lignohabitans uncharacterized protein XP_018738325.1 4366317 R 796027 CDS AWJ20_3493 30035521 complement(4367249..4368664) B 1 NC_031674.1 uncharacterized protein 4368664 30035521 AWJ20_3493 Sugiyamaella lignohabitans uncharacterized protein XP_018738326.1 4367249 R 796027 CDS AWJ20_3494 30035522 complement(4368931..4369710) B 1 NC_031674.1 Glyoxylate reductase; acts on glyoxylate and hydroxypyruvate substrates; YPL113C is not an essential gene; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0048037 - cofactor binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor [Evidence IEA]; GO_function: GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor [Evidence IMP] [PMID 17173333]; GO_process: GO:0008152 - metabolic process [Evidence IMP] [PMID 17173333]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; glyoxylate reductase 4369710 30035522 AWJ20_3494 Sugiyamaella lignohabitans glyoxylate reductase XP_018738327.1 4368931 R 796027 CDS AWJ20_3495 30035523 4370939..4372180 B 1 NC_031674.1 Arginosuccinate synthetase; catalyzes the formation of L-argininosuccinate from citrulline and L-aspartate in the arginine biosynthesis pathway; potential Cdc28p substrate; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 205532]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004055 - argininosuccinate synthase activity [Evidence IEA,IEA]; GO_function: GO:0004055 - argininosuccinate synthase activity [Evidence IDA] [PMID 2897249]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006526 - arginine biosynthetic process [Evidence IEA,IEA,IEA]; GO_process: GO:0006526 - arginine biosynthetic process [Evidence IEP,IMP] [PMID 2897249]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; argininosuccinate synthase 4372180 ARG1 30035523 ARG1 Sugiyamaella lignohabitans argininosuccinate synthase XP_018738328.1 4370939 D 796027 CDS AWJ20_3496 30035524 4372414..4373055 B 1 NC_031674.1 hypothetical protein; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm in a punctate pattern; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0005509 - calcium ion binding [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; Ssp120p 4373055 SSP120 30035524 SSP120 Sugiyamaella lignohabitans Ssp120p XP_018738329.1 4372414 D 796027 CDS AWJ20_3497 30035525 complement(4373230..4376118) B 1 NC_031674.1 Subunit of a kinetochore-microtubule binding complex; complex bridges centromeric heterochromatin and kinetochore MAPs and motors; required for sister chromatid bi-orientation and kinetochore binding of SAC components; complex also includes Kre28p; modified by sumoylation; GO_component: GO:0005694 - chromosome [Evidence IEA]; GO_component: GO:0000775 - chromosome, centromeric region [Evidence IEA]; GO_component: GO:0000777 - condensed chromosome kinetochore [Evidence IEA]; GO_component: GO:0000778 - condensed nuclear chromosome kinetochore [Evidence IDA] [PMID 19893618]; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA]; GO_component: GO:0000776 - kinetochore [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0031965 - nuclear membrane [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0005816 - spindle pole body [Evidence IEA]; GO_component: GO:0005816 - spindle pole body [Evidence IDA] [PMID 9585415]; GO_function: GO:0008017 - microtubule binding [Evidence IDA] [PMID 19893618]; GO_function: GO:0005200 - structural constituent of cytoskeleton [Evidence IPI] [PMID 9585415]; GO_process: GO:0007020 - microtubule nucleation [Evidence IPI] [PMID 9153752]; GO_process: GO:0007094 - mitotic spindle assembly checkpoint [Evidence IMP] [PMID 19893618]; GO_process: GO:0034501 - protein localization to kinetochore [Evidence IMP] [PMID 19893618]; GO_process: GO:0031134 - sister chromatid biorientation [Evidence IMP] [PMID 19893618]; Spc105p 4376118 SPC105 30035525 SPC105 Sugiyamaella lignohabitans Spc105p XP_018738330.1 4373230 R 796027 CDS AWJ20_3498 30035526 complement(4376989..4379232) B 1 NC_031674.1 Ferric reductase and cupric reductase; reduces siderophore-bound iron and oxidized copper prior to uptake by transporters; expression induced by low iron levels but not by low copper levels; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 8164662]; GO_function: GO:0052851 - ferric-chelate reductase (NADPH) activity [Evidence IEA]; GO_function: GO:0000293 - ferric-chelate reductase activity [Evidence IDA] [PMID 8164662]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_process: GO:0015677 - copper ion import [Evidence IDA] [PMID 9153234]; GO_process: GO:0006825 - copper ion transport [Evidence IEA]; GO_process: GO:0006811 - ion transport [Evidence IEA]; GO_process: GO:0055072 - iron ion homeostasis [Evidence IEA]; GO_process: GO:0006826 - iron ion transport [Evidence IDA] [PMID 8164662]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; Fre2p 4379232 FRE2 30035526 FRE2 Sugiyamaella lignohabitans Fre2p XP_018738331.1 4376989 R 796027 CDS AWJ20_3499 30035527 4383385..4384404 B 1 NC_031674.1 Mannosylinositol phosphorylceramide (MIPC) synthase catalytic subunit; forms a complex with regulatory subunit Csg2p; function in sphingolipid biosynthesis is overlapping with that of Csh1p; SUR1 has a paralog, CSH1, that arose from the whole genome duplication; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 19001347]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0005622 - intracellular [Evidence IC] [PMID 10931938]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_function: GO:0000030 - mannosyltransferase activity [Evidence IGI,IMP] [PMID 12954640]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA]; GO_function: GO:0016757 - transferase activity, transferring glycosyl groups [Evidence ISS] [PMID 9653120]; GO_process: GO:0006688 - glycosphingolipid biosynthetic process [Evidence IMP,ISS] [PMID 9323360]; GO_process: GO:0006675 - mannosyl-inositol phosphorylceramide metabolic process [Evidence IMP] [PMID 9323360]; GO_process: GO:0030148 - sphingolipid biosynthetic process [Evidence TAS] [PMID 10366774]; GO_process: GO:0030148 - sphingolipid biosynthetic process [Evidence IMP] [PMID 12954640]; mannosylinositol phosphorylceramide synthase catalytic subunit SUR1 4384404 SUR1 30035527 SUR1 Sugiyamaella lignohabitans mannosylinositol phosphorylceramide synthase catalytic subunit SUR1 XP_018738332.1 4383385 D 796027 CDS AWJ20_3500 30035530 4384734..4387070 B 1 NC_031674.1 Methionyl-tRNA synthetase; forms a complex with glutamyl-tRNA synthetase (Gus1p) and Arc1p, which increases the catalytic efficiency of both tRNA synthetases; also has a role in nuclear export of tRNAs; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 3905796]; GO_component: GO:0017102 - methionyl glutamyl tRNA synthetase complex [Evidence IDA] [PMID 11069915]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004812 - aminoacyl-tRNA ligase activity [Evidence IEA,IEA]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0004825 - methionine-tRNA ligase activity [Evidence IEA,IEA]; GO_function: GO:0004825 - methionine-tRNA ligase activity [Evidence IDA] [PMID 3312199]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_process: GO:0006431 - methionyl-tRNA aminoacylation [Evidence IEA]; GO_process: GO:0006431 - methionyl-tRNA aminoacylation [Evidence IDA] [PMID 3312199]; GO_process: GO:0006418 - tRNA aminoacylation for protein translation [Evidence IEA]; GO_process: GO:0006412 - translation [Evidence IEA]; methionine--tRNA ligase MES1 4387070 MES1 30035530 MES1 Sugiyamaella lignohabitans methionine--tRNA ligase MES1 XP_018738333.1 4384734 D 796027 CDS AWJ20_3501 30035531 complement(4387214..4389370) B 1 NC_031674.1 Essential splicing factor; associated with Prp19p and the spliceosome, contains an N-terminal c-Myb DNA binding motif necessary for cell viability but not for Prp19p association, evolutionarily conserved and homologous to S. pombe Cdc5p; GO_component: GO:0000974 - Prp19 complex [Evidence IDA] [PMID 10092627]; GO_component: GO:0071006 - U2-type catalytic step 1 spliceosome [Evidence IDA] [PMID 10092627]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005681 - spliceosomal complex [Evidence IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0003682 - chromatin binding [Evidence IEA]; GO_function: GO:0000384 - first spliceosomal transesterification activity [Evidence IC] [PMID 10092627]; GO_function: GO:0000386 - second spliceosomal transesterification activity [Evidence IMP] [PMID 22408182]; GO_process: GO:0008380 - RNA splicing [Evidence IEA]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0000350 - generation of catalytic spliceosome for second transesterification step [Evidence IMP] [PMID 22408182]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0000398 - mRNA splicing, via spliceosome [Evidence IMP] [PMID 10092627]; Cef1p 4389370 CEF1 30035531 CEF1 Sugiyamaella lignohabitans Cef1p XP_018738334.1 4387214 R 796027 CDS AWJ20_3502 30035532 4390880..4393507 B 1 NC_031674.1 putative serine/threonine protein kinase HRK1 4393507 HRK1 30035532 HRK1 Sugiyamaella lignohabitans putative serine/threonine protein kinase HRK1 XP_018738335.1 4390880 D 796027 CDS AWJ20_3503 30035533 complement(4393676..4394962) B 1 NC_031674.1 5-phospho-ribosyl-1(alpha)-pyrophosphate synthetase; synthesizes PRPP, which is required for nucleotide, histidine, and tryptophan biosynthesis; one of five related enzymes, which are active as heteromultimeric complexes; forms cytoplasmic foci upon DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000287 - magnesium ion binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0004749 - ribose phosphate diphosphokinase activity [Evidence IEA,IEA]; GO_function: GO:0004749 - ribose phosphate diphosphokinase activity [Evidence IGI] [PMID 15280369]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006015 - 5-phosphoribose 1-diphosphate biosynthetic process [Evidence IEA]; GO_process: GO:0006015 - 5-phosphoribose 1-diphosphate biosynthetic process [Evidence IMP] [PMID 10212224]; GO_process: GO:0006015 - 5-phosphoribose 1-diphosphate biosynthetic process [Evidence IGI] [PMID 15280369]; GO_process: GO:0044249 - cellular biosynthetic process [Evidence IEA]; GO_process: GO:0031505 - fungal-type cell wall organization [Evidence IPI] [PMID 15470112]; GO_process: GO:0009165 - nucleotide biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; GO_process: GO:0009156 - ribonucleoside monophosphate biosynthetic process [Evidence IEA]; ribose phosphate diphosphokinase subunit PRS5 4394962 PRS5 30035533 PRS5 Sugiyamaella lignohabitans ribose phosphate diphosphokinase subunit PRS5 XP_018738336.1 4393676 R 796027 CDS AWJ20_3504 30035534 complement(4398735..4400138) B 1 NC_031674.1 uncharacterized protein 4400138 30035534 AWJ20_3504 Sugiyamaella lignohabitans uncharacterized protein XP_018738337.1 4398735 R 796027 CDS AWJ20_3505 30035535 complement(4406911..4407216) B 1 NC_031674.1 Delta subunit of the central stalk of mitochondrial F1F0 ATP synthase; F1F0 ATP synthase is a large, evolutionarily conserved enzyme complex required for ATP synthesis; F1 translationally regulates ATP6 and ATP8 expression to achieve a balanced output of ATP synthase genes encoded in nucleus and mitochondria; phosphorylated; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005756 - mitochondrial proton-transporting ATP synthase, central stalk [Evidence IDA] [PMID 17082766]; GO_component: GO:0005756 - mitochondrial proton-transporting ATP synthase, central stalk [Evidence IMP,IPI,ISS] [PMID 8026496]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0045261 - proton-transporting ATP synthase complex, catalytic core F(1) [Evidence IEA,IEA]; GO_component: GO:0045261 - proton-transporting ATP synthase complex, catalytic core F(1) [Evidence IDA] [PMID 15294286]; GO_function: GO:0016887 - ATPase activity [Evidence IDA] [PMID 15294286]; GO_function: GO:0016887 - ATPase activity [Evidence IDA] [PMID 18722382]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046933 - proton-transporting ATP synthase activity, rotational mechanism [Evidence IEA]; GO_function: GO:0046933 - proton-transporting ATP synthase activity, rotational mechanism [Evidence IDA] [PMID 20691145]; GO_function: GO:0046933 - proton-transporting ATP synthase activity, rotational mechanism [Evidence IMP,ISS] [PMID 8026496]; GO_function: GO:0046961 - proton-transporting ATPase activity, rotational mechanism [Evidence IEA]; GO_process: GO:0006754 - ATP biosynthetic process [Evidence IEA]; GO_process: GO:0015986 - ATP synthesis coupled proton transport [Evidence IEA]; GO_process: GO:0015986 - ATP synthesis coupled proton transport [Evidence IDA] [PMID 20691145]; GO_process: GO:0015986 - ATP synthesis coupled proton transport [Evidence IMP,IPI,ISS] [PMID 8026496]; GO_process: GO:0006811 - ion transport [Evidence IEA]; GO_process: GO:0015992 - proton transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; F1F0 ATP synthase subunit delta 4407216 ATP16 30035535 ATP16 Sugiyamaella lignohabitans F1F0 ATP synthase subunit delta XP_018738338.1 4406911 R 796027 CDS AWJ20_3506 30035536 complement(4409196..4410800) B 1 NC_031674.1 Type 2C protein phosphatase (PP2C); dephosphorylates Hog1p, inactivating osmosensing MAPK cascade; involved in Fus3p activation during pheromone response; deletion affects precursor tRNA splicing, mitochondrial inheritance, and sporulation; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11113180]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11113180]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004721 - phosphoprotein phosphatase activity [Evidence IEA,IEA]; GO_function: GO:0004722 - protein serine/threonine phosphatase activity [Evidence IEA]; GO_function: GO:0004722 - protein serine/threonine phosphatase activity [Evidence IDA] [PMID 10580002]; GO_process: GO:0000173 - inactivation of MAPK activity involved in osmosensory signaling pathway [Evidence IDA,IGI,IMP] [PMID 11113180]; GO_process: GO:0000001 - mitochondrion inheritance [Evidence IMP] [PMID 9529388]; GO_process: GO:0000750 - pheromone-dependent signal transduction involved in conjugation with cellular fusion [Evidence IMP] [PMID 20400943]; GO_process: GO:0006470 - protein dephosphorylation [Evidence IEA]; GO_process: GO:0006470 - protein dephosphorylation [Evidence IDA] [PMID 10580002]; GO_process: GO:0006470 - protein dephosphorylation [Evidence IDA] [PMID 11113180]; GO_process: GO:0006950 - response to stress [Evidence IEA]; GO_process: GO:0006388 - tRNA splicing, via endonucleolytic cleavage and ligation [Evidence IMP] [PMID 8196609]; type 2C protein phosphatase PTC1 4410800 PTC1 30035536 PTC1 Sugiyamaella lignohabitans type 2C protein phosphatase PTC1 XP_018738339.1 4409196 R 796027 CDS AWJ20_3507 30035537 4412616..4413314 B 1 NC_031674.1 uncharacterized protein 4413314 30035537 AWJ20_3507 Sugiyamaella lignohabitans uncharacterized protein XP_018738340.1 4412616 D 796027 CDS AWJ20_3508 30035538 complement(4413498..4414628) B 1 NC_031674.1 ATPase of the 19S regulatory particle of the 26S proteasome; one of six ATPases of the regulatory particle; involved in the degradation of ubiquitinated substrates; required for normal peptide hydrolysis by the core 20S particle; N-myristoylation of Rpt2p at Gly2 is involved in regulating the proper intracellular distribution of proteasome activity by controlling the nuclear localization of the 26S proteasome; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 15210724]; GO_component: GO:0000502 - proteasome complex [Evidence IEA]; GO_component: GO:0008540 - proteasome regulatory particle, base subcomplex [Evidence IDA] [PMID 9741626]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016887 - ATPase activity [Evidence IDA] [PMID 7721833]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_function: GO:0036402 - proteasome-activating ATPase activity [Evidence IGI,IMP] [PMID 11430818]; GO_process: GO:0070651 - nonfunctional rRNA decay [Evidence IMP] [PMID 22505030]; GO_process: GO:0043171 - peptide catabolic process [Evidence IMP] [PMID 9724628]; GO_process: GO:0045732 - positive regulation of protein catabolic process [Evidence IDA] [PMID 15135049]; GO_process: GO:0070682 - proteasome regulatory particle assembly [Evidence IMP] [PMID 19412160]; GO_process: GO:0030163 - protein catabolic process [Evidence IEA]; GO_process: GO:0031503 - protein complex localization [Evidence IMP] [PMID 23102099]; GO_process: GO:0006511 - ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 9724628]; proteasome regulatory particle base subunit RPT2 4414628 RPT2 30035538 RPT2 Sugiyamaella lignohabitans proteasome regulatory particle base subunit RPT2 XP_018738341.1 4413498 R 796027 CDS AWJ20_3509 30035539 complement(4416222..4416497) B 1 NC_031674.1 Ubiquitin-conjugating enzyme; key E2 partner with Ubc4p for the anaphase-promoting complex (APC); mediates selective degradation of short-lived and abnormal proteins; plays a role in vesicle biogenesis and ER-associated protein degradation (ERAD); component of the cellular stress response; protein abundance increases in response to DNA replication stress key E2 partner with Ubc4p for the anaphase-promoting complex (APC); GO_component: GO:0000502 - proteasome complex [Evidence IPI] [PMID 10848595]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0016881 - acid-amino acid ligase activity [Evidence IEA]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence IEA]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence IDA,ISS] [PMID 2265617]; GO_process: GO:0030433 - ER-associated ubiquitin-dependent protein catabolic process [Evidence IGI,IMP] [PMID 10878801]; GO_process: GO:0016567 - protein ubiquitination [Evidence IEA]; GO_process: GO:0042787 - protein ubiquitination involved in ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 11134048]; GO_process: GO:0042787 - protein ubiquitination involved in ubiquitin-dependent protein catabolic process [Evidence IGI,IMP] [PMID 2265617]; GO_process: GO:0006950 - response to stress [Evidence IEA]; GO_process: GO:0016050 - vesicle organization [Evidence IMP] [PMID 11134048]; E2 ubiquitin-conjugating protein UBC1 4416497 UBC1 30035539 UBC1 Sugiyamaella lignohabitans E2 ubiquitin-conjugating protein UBC1 XP_018738342.1 4416222 R 796027 CDS AWJ20_3510 30035541 complement(4416793..4418256) B 1 NC_031674.1 Mitochondrial protein that participates in respiration; induced by diauxic shift; homologous to E. coli PrpD, may take part in the conversion of 2-methylcitrate to 2-methylisocitrate; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IDA] [PMID 16407407]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0051537 - 2 iron, 2 sulfur cluster binding [Evidence IEA,IEA]; GO_function: GO:0047547 - 2-methylcitrate dehydratase activity [Evidence IEA,IEA]; GO_function: GO:0047547 - 2-methylcitrate dehydratase activity [Evidence ISA] [PMID 9006051]; GO_function: GO:0051536 - iron-sulfur cluster binding [Evidence IEA]; GO_function: GO:0016829 - lyase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_process: GO:0019543 - propionate catabolic process [Evidence IEA]; GO_process: GO:0019629 - propionate catabolic process, 2-methylcitrate cycle [Evidence IEA]; GO_process: GO:0019629 - propionate catabolic process, 2-methylcitrate cycle [Evidence ISA] [PMID 9006051]; GO_process: GO:0019541 - propionate metabolic process [Evidence IMP] [PMID 11179416]; Pdh1p 4418256 PDH1 30035541 PDH1 Sugiyamaella lignohabitans Pdh1p XP_018738343.1 4416793 R 796027 CDS AWJ20_3511 30035542 4422009..4423004 B 1 NC_031674.1 Glycerol dehydrogenase; involved in an alternative pathway for glycerol catabolism used under microaerobic conditions; also has mRNA binding activity; member of the aldo-keto reductase (AKR) family; protein abundance increases in response to DNA replication stress; GCY1 has a paralog, YPR1, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0004032 - alditol:NADP+ 1-oxidoreductase activity [Evidence IDA,ISS] [PMID 11306085]; GO_function: GO:0004033 - aldo-keto reductase (NADP) activity [Evidence IDA] [PMID 10818358]; GO_function: GO:0004033 - aldo-keto reductase (NADP) activity [Evidence IDA] [PMID 17140678]; GO_function: GO:0047953 - glycerol 2-dehydrogenase (NADP+) activity [Evidence IEA]; GO_function: GO:1990042 - glycerol dehydrogenase [NAD(P)+] activity [Evidence IMP] [PMID 22979944]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 20844764]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IDA] [PMID 17962934]; GO_process: GO:0042843 - D-xylose catabolic process [Evidence IDA] [PMID 12271459]; GO_process: GO:0019568 - arabinose catabolic process [Evidence IDA] [PMID 12271459]; GO_process: GO:0034599 - cellular response to oxidative stress [Evidence IGI] [PMID 17919749]; GO_process: GO:0006071 - glycerol metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; glycerol 2-dehydrogenase (NADP(+)) GCY1 4423004 GCY1 30035542 GCY1 Sugiyamaella lignohabitans glycerol 2-dehydrogenase (NADP(+)) GCY1 XP_018738344.1 4422009 D 796027 CDS AWJ20_3512 30035543 complement(4423240..4425150) B 1 NC_031674.1 F-box protein component of an SCF ubiquitin-ligase complex; modular substrate specificity factor which associates with core SCF (Cdc53p, Skp1p and Hrt1p/Rbx1p) to form the SCF(Grr1) complex; SCF(Grr1) acts as a ubiquitin-protein ligase directing ubiquitination of substrates such as: Gic2p, Mks1p, Mth1p, Cln1p, Cln2p and Cln3p; involved in carbon catabolite repression, glucose-dependent divalent cation transport, glucose transport, morphogenesis, and sulfite detoxification; GO_component: GO:0019005 - SCF ubiquitin ligase complex [Evidence IMP] [PMID 9736614]; GO_component: GO:0000142 - cellular bud neck contractile ring [Evidence IDA] [PMID 11080155]; GO_component: GO:0000142 - cellular bud neck contractile ring [Evidence IDA] [PMID 15775961]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11080155]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11080155]; GO_function: GO:0030674 - protein binding, bridging [Evidence IDA] [PMID 11259599]; GO_function: GO:0030674 - protein binding, bridging [Evidence IDA] [PMID 9346238]; GO_function: GO:0030674 - protein binding, bridging [Evidence IDA,IMP] [PMID 9819356]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence IDA] [PMID 10213692]; GO_process: GO:0000082 - G1/S transition of mitotic cell cycle [Evidence TAS] [PMID 9346231]; GO_process: GO:0031146 - SCF-dependent proteasomal ubiquitin-dependent protein catabolic process [Evidence IPI] [PMID 10213692]; GO_process: GO:0005975 - carbohydrate metabolic process [Evidence IEA]; GO_process: GO:0000751 - cell cycle arrest in response to pheromone [Evidence IMP] [PMID 15942932]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IMP] [PMID 12482937]; GO_process: GO:0071406 - cellular response to methylmercury [Evidence IMP] [PMID 17141224]; GO_process: GO:0006006 - glucose metabolic process [Evidence IEA]; GO_process: GO:0000209 - protein polyubiquitination [Evidence IMP] [PMID 16093347]; GO_process: GO:0016567 - protein ubiquitination [Evidence IEA]; GO_process: GO:0016567 - protein ubiquitination [Evidence IGI,IPI] [PMID 9499404]; SCF ubiquitin ligase complex subunit GRR1 4425150 GRR1 30035543 GRR1 Sugiyamaella lignohabitans SCF ubiquitin ligase complex subunit GRR1 XP_018738345.1 4423240 R 796027 CDS AWJ20_3513 30035544 4427940..4429034 B 1 NC_031674.1 uncharacterized protein 4429034 30035544 AWJ20_3513 Sugiyamaella lignohabitans uncharacterized protein XP_018738346.1 4427940 D 796027 CDS AWJ20_3514 30035545 complement(4429250..4430491) B 1 NC_031674.1 Putative tubulin tyrosine ligase associated with P-bodies; forms cytoplasmic foci upon DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0000932 - cytoplasmic mRNA processing body [Evidence IEA]; GO_component: GO:0000932 - cytoplasmic mRNA processing body [Evidence IDA] [PMID 17307817]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0004835 - tubulin-tyrosine ligase activity [Evidence IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0006464 - cellular protein modification process [Evidence IEA]; GO_process: GO:0000956 - nuclear-transcribed mRNA catabolic process [Evidence IMP] [PMID 17307817]; Pby1p 4430491 PBY1 30035545 PBY1 Sugiyamaella lignohabitans Pby1p XP_018738347.1 4429250 R 796027 CDS AWJ20_3515 30035546 complement(4430700..4431503) B 1 NC_031674.1 Putative tubulin tyrosine ligase associated with P-bodies; forms cytoplasmic foci upon DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0000932 - cytoplasmic mRNA processing body [Evidence IEA]; GO_component: GO:0000932 - cytoplasmic mRNA processing body [Evidence IDA] [PMID 17307817]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0004835 - tubulin-tyrosine ligase activity [Evidence IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0006464 - cellular protein modification process [Evidence IEA]; GO_process: GO:0000956 - nuclear-transcribed mRNA catabolic process [Evidence IMP] [PMID 17307817]; Pby1p 4431503 PBY1 30035546 PBY1 Sugiyamaella lignohabitans Pby1p XP_018738348.1 4430700 R 796027 CDS AWJ20_3516 30035547 complement(4432279..4433031) B 1 NC_031674.1 Proton-coupled oligopeptide transporter of the plasma membrane; also transports glutathione and phytochelatin; member of the OPT family; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0005887 - integral component of plasma membrane [Evidence IMP,ISS] [PMID 10788431]; GO_component: GO:0005887 - integral component of plasma membrane [Evidence IDA] [PMID 19496824]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_function: GO:0015198 - oligopeptide transporter activity [Evidence IMP] [PMID 10652283]; GO_function: GO:0005427 - proton-dependent oligopeptide secondary active transmembrane transporter activity [Evidence IDA] [PMID 16149917]; GO_process: GO:0006857 - oligopeptide transport [Evidence IDA] [PMID 16149917]; GO_process: GO:0015833 - peptide transport [Evidence IEA]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006790 - sulfur compound metabolic process [Evidence IEP] [PMID 11862495]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; oligopeptide transporter OPT1 4433031 OPT1 30035547 OPT1 Sugiyamaella lignohabitans oligopeptide transporter OPT1 XP_018738349.1 4432279 R 796027 CDS AWJ20_3517 30035548 4437224..4438108 B 1 NC_031674.1 C-4 methyl sterol oxidase; catalyzes the first of three steps required to remove two C-4 methyl groups from an intermediate in ergosterol biosynthesis; mutants accumulate the sterol intermediate 4,4-dimethylzymosterol; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IDA] [PMID 8663358]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 8663358]; GO_function: GO:0000254 - C-4 methylsterol oxidase activity [Evidence IEA]; GO_function: GO:0000254 - C-4 methylsterol oxidase activity [Evidence IDA] [PMID 8663358]; GO_function: GO:0005506 - iron ion binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_process: GO:0006696 - ergosterol biosynthetic process [Evidence IDA] [PMID 8663358]; GO_process: GO:0006633 - fatty acid biosynthetic process [Evidence IEA]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0006694 - steroid biosynthetic process [Evidence IEA]; GO_process: GO:0008202 - steroid metabolic process [Evidence IEA]; GO_process: GO:0016126 - sterol biosynthetic process [Evidence IEA]; methylsterol monooxygenase 4438108 ERG25 30035548 ERG25 Sugiyamaella lignohabitans methylsterol monooxygenase XP_018738350.1 4437224 D 796027 CDS AWJ20_3518 30035549 complement(4438227..4439987) B 1 NC_031674.1 uncharacterized protein 4439987 30035549 AWJ20_3518 Sugiyamaella lignohabitans uncharacterized protein XP_018738351.1 4438227 R 796027 CDS AWJ20_3519 30035550 4440569..4442047 B 1 NC_031674.1 Subunit of the Anaphase-Promoting Complex/Cyclosome (APC/C); APC/C is a ubiquitin-protein ligase required for degradation of anaphase inhibitors, including mitotic cyclins, during the metaphase/anaphase transition; GO_component: GO:0005680 - anaphase-promoting complex [Evidence IEA]; GO_component: GO:0005680 - anaphase-promoting complex [Evidence IDA] [PMID 9469814]; GO_component: GO:0005694 - chromosome [Evidence IEA]; GO_component: GO:0000775 - chromosome, centromeric region [Evidence IEA]; GO_component: GO:0000777 - condensed chromosome kinetochore [Evidence IEA]; GO_component: GO:0000776 - kinetochore [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0030332 - cyclin binding [Evidence IPI] [PMID 12413490]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence IMP] [PMID 16481473]; GO_process: GO:0031145 - anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 16481473]; GO_process: GO:0031145 - anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process [Evidence IDA] [PMID 8895471]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0007067 - mitotic nuclear division [Evidence IEA]; GO_process: GO:0016567 - protein ubiquitination [Evidence IEA]; GO_process: GO:0016567 - protein ubiquitination [Evidence IDA,IMP] [PMID 16481473]; GO_process: GO:0030071 - regulation of mitotic metaphase/anaphase transition [Evidence IEA]; anaphase promoting complex subunit CDC23 4442047 CDC23 30035550 CDC23 Sugiyamaella lignohabitans anaphase promoting complex subunit CDC23 XP_018738352.1 4440569 D 796027 CDS AWJ20_3520 30035552 complement(4442260..4444344) B 1 NC_031674.1 Hexameric DNA polymerase alpha-associated DNA helicase A; involved in lagging strand DNA synthesis; contains single-stranded DNA stimulated ATPase and dATPase activities; replication protein A stimulates helicase and ATPase activities; GO_component: GO:0033203 - DNA helicase A complex [Evidence IDA] [PMID 9341218]; GO_component: GO:0005658 - alpha DNA polymerase:primase complex [Evidence IDA] [PMID 8257676]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0043141 - ATP-dependent 5'-3' DNA helicase activity [Evidence IDA] [PMID 8257676]; GO_function: GO:0043141 - ATP-dependent 5'-3' DNA helicase activity [Evidence IDA] [PMID 9341218]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0004386 - helicase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_process: GO:0006273 - lagging strand elongation [Evidence IC] [PMID 8257676]; ATP-dependent 5'-3' DNA helicase HCS1 4444344 HCS1 30035552 HCS1 Sugiyamaella lignohabitans ATP-dependent 5'-3' DNA helicase HCS1 XP_018738353.1 4442260 R 796027 CDS AWJ20_3521 30035553 4444588..4446216 B 1 NC_031674.1 mRNA splicing protein PRP45 4446216 PRP45 30035553 PRP45 Sugiyamaella lignohabitans mRNA splicing protein PRP45 XP_018738354.1 4444588 D 796027 CDS AWJ20_3522 30035554 complement(4446307..4446816) B 1 NC_031674.1 RNA-binding protein POP5 4446816 POP5 30035554 POP5 Sugiyamaella lignohabitans RNA-binding protein POP5 XP_018738355.1 4446307 R 796027 CDS AWJ20_3523 30035555 4446976..4447662 B 1 NC_031674.1 Trimethyl guanosine synthase, conserved nucleolar methyl transferase; converts the m(7)G cap structure of snRNAs, snoRNAs, and telomerase TLC1 RNA to m(2,2,7)G; also required for nucleolar assembly and splicing of meiotic pre-mRNAs; interacts with Swm2p, which may confer substrate specificity on Tgs1p; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 11983179]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_function: GO:0008173 - RNA methyltransferase activity [Evidence IMP,ISS] [PMID 11983179]; GO_function: GO:0008168 - methyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0009452 - 7-methylguanosine RNA capping [Evidence IEA]; GO_process: GO:0036261 - 7-methylguanosine cap hypermethylation [Evidence IMP] [PMID 11983179]; GO_process: GO:0001510 - RNA methylation [Evidence IEA]; GO_process: GO:0001510 - RNA methylation [Evidence IMP] [PMID 11983179]; GO_process: GO:0007126 - meiotic nuclear division [Evidence IMP] [PMID 21398639]; GO_process: GO:0032259 - methylation [Evidence IEA]; GO_process: GO:0017126 - nucleologenesis [Evidence IMP] [PMID 15340060]; GO_process: GO:0032210 - regulation of telomere maintenance via telomerase [Evidence IMP] [PMID 18273059]; GO_process: GO:0032210 - regulation of telomere maintenance via telomerase [Evidence IMP] [PMID 18840651]; Tgs1p 4447662 TGS1 30035555 TGS1 Sugiyamaella lignohabitans Tgs1p XP_018738356.1 4446976 D 796027 CDS AWJ20_3524 30035556 complement(4447819..4450563) B 1 NC_031674.1 Cytoplasmic and mitochondrial alanyl-tRNA synthetase; required for protein synthesis; point mutation (cdc64-1 allele) causes cell cycle arrest at G1; lethality of null mutation is functionally complemented by human homolog; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 16556230]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16556230]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0004813 - alanine-tRNA ligase activity [Evidence IEA,IEA]; GO_function: GO:0004813 - alanine-tRNA ligase activity [Evidence IGI,ISS] [PMID 7761427]; GO_function: GO:0004812 - aminoacyl-tRNA ligase activity [Evidence IEA]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0016876 - ligase activity, forming aminoacyl-tRNA and related compounds [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_function: GO:0000049 - tRNA binding [Evidence IEA]; GO_process: GO:0006419 - alanyl-tRNA aminoacylation [Evidence IEA]; GO_process: GO:0006419 - alanyl-tRNA aminoacylation [Evidence IGI,IMP] [PMID 7761427]; GO_process: GO:0070143 - mitochondrial alanyl-tRNA aminoacylation [Evidence IC] [PMID 16556230]; GO_process: GO:0043039 - tRNA aminoacylation [Evidence IEA]; GO_process: GO:0006412 - translation [Evidence IEA]; alanine--tRNA ligase 4450563 ALA1 30035556 ALA1 Sugiyamaella lignohabitans alanine--tRNA ligase XP_018738357.1 4447819 R 796027 CDS AWJ20_3525 30035557 complement(4451403..4452650) B 1 NC_031674.1 Beta subunit of the F1 sector of mitochondrial F1F0 ATP synthase; which is a large, evolutionarily conserved enzyme complex required for ATP synthesis; F1 translationally regulates ATP6 and ATP8 expression to achieve a balanced output of ATP synthase genes encoded in nucleus and mitochondria; phosphorylated; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005754 - mitochondrial proton-transporting ATP synthase, catalytic core [Evidence IDA] [PMID 17082766]; GO_component: GO:0005754 - mitochondrial proton-transporting ATP synthase, catalytic core [Evidence IMP] [PMID 6225776]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IPI] [PMID 16962558]; GO_component: GO:0045261 - proton-transporting ATP synthase complex, catalytic core F(1) [Evidence IEA]; GO_component: GO:0045261 - proton-transporting ATP synthase complex, catalytic core F(1) [Evidence IDA] [PMID 15294286]; GO_component: GO:0033178 - proton-transporting two-sector ATPase complex, catalytic domain [Evidence IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016887 - ATPase activity [Evidence IDA] [PMID 15294286]; GO_function: GO:0016887 - ATPase activity [Evidence IDA] [PMID 18722382]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016820 - hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances [Evidence IEA]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_function: GO:0046933 - proton-transporting ATP synthase activity, rotational mechanism [Evidence IEA]; GO_function: GO:0046933 - proton-transporting ATP synthase activity, rotational mechanism [Evidence IDA] [PMID 20691145]; GO_function: GO:0046933 - proton-transporting ATP synthase activity, rotational mechanism [Evidence IMP,ISS] [PMID 6225776]; GO_function: GO:0046961 - proton-transporting ATPase activity, rotational mechanism [Evidence IMP] [PMID 2529856]; GO_process: GO:0006754 - ATP biosynthetic process [Evidence IEA]; GO_process: GO:0015991 - ATP hydrolysis coupled proton transport [Evidence IEA]; GO_process: GO:0046034 - ATP metabolic process [Evidence IEA]; GO_process: GO:0015986 - ATP synthesis coupled proton transport [Evidence IEA]; GO_process: GO:0015986 - ATP synthesis coupled proton transport [Evidence IDA] [PMID 20691145]; GO_process: GO:0015986 - ATP synthesis coupled proton transport [Evidence IMP] [PMID 2529856]; GO_process: GO:0015986 - ATP synthesis coupled proton transport [Evidence IMP,ISS] [PMID 6225776]; GO_process: GO:0006811 - ion transport [Evidence IEA]; GO_process: GO:0015992 - proton transport [Evidence IEA,IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; F1F0 ATP synthase subunit beta 4452650 ATP2 30035557 ATP2 Sugiyamaella lignohabitans F1F0 ATP synthase subunit beta XP_018738358.1 4451403 R 796027 CDS AWJ20_3526 30035558 4454626..4457226 B 1 NC_031674.1 transcription factor, putative 4457226 30035558 AWJ20_3526 Sugiyamaella lignohabitans transcription factor, putative XP_018738359.1 4454626 D 796027 CDS AWJ20_3527 30035559 complement(4457329..4461366) B 1 NC_031674.1 Essential protein required for determination of budding pattern; promotes localization of axial markers Bud4p and Cdc12p and functionally interacts with Sec3p, localizes to the contractile ring during anaphase, member of the IQGAP family; relocalizes from bud neck to cytoplasm upon DNA replication stress; GO_component: GO:0005935 - cellular bud neck [Evidence IEA]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 22842922]; GO_component: GO:0000142 - cellular bud neck contractile ring [Evidence TAS] [PMID 10652251]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_function: GO:0005096 - GTPase activator activity [Evidence IEA]; GO_function: GO:0005099 - Ras GTPase activator activity [Evidence IEA]; GO_function: GO:0003779 - actin binding [Evidence IEA]; GO_function: GO:0008092 - cytoskeletal protein binding [Evidence IPI] [PMID 9950677]; GO_process: GO:0007015 - actin filament organization [Evidence IPI] [PMID 9950677]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0000920 - cytokinetic cell separation [Evidence IMP] [PMID 9442111]; GO_process: GO:0043547 - positive regulation of GTPase activity [Evidence IEA]; GO_process: GO:0032320 - positive regulation of Ras GTPase activity [Evidence IEA]; GO_process: GO:0051056 - regulation of small GTPase mediated signal transduction [Evidence IEA]; GO_process: GO:0006970 - response to osmotic stress [Evidence TAS] [PMID 10652251]; GO_process: GO:0007165 - signal transduction [Evidence IEA]; GO_process: GO:0007264 - small GTPase mediated signal transduction [Evidence IEA]; Iqg1p 4461366 IQG1 30035559 IQG1 Sugiyamaella lignohabitans Iqg1p XP_018738360.1 4457329 R 796027 CDS AWJ20_3528 30035560 complement(4461628..4462194) B 1 NC_031674.1 uncharacterized protein 4462194 30035560 AWJ20_3528 Sugiyamaella lignohabitans uncharacterized protein XP_018738361.1 4461628 R 796027 CDS AWJ20_3529 30035561 4463162..4463809 B 1 NC_031674.1 MIND complex subunit NSL1 4463809 NSL1 30035561 NSL1 Sugiyamaella lignohabitans MIND complex subunit NSL1 XP_018738362.1 4463162 D 796027 CDS AWJ20_3530 30035563 complement(4464174..4464737) B 1 NC_031674.1 Probable membrane protein; involved in phosphate transport; role in the maturation of secretory proteins; pho88 pho86 double null mutant exhibits enhanced synthesis of repressible acid phosphatase at high inorganic phosphate concentrations; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0016020 - membrane [Evidence IDA] [PMID 8709965]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006817 - phosphate ion transport [Evidence IEA]; GO_process: GO:0006817 - phosphate ion transport [Evidence IGI,IMP,ISS] [PMID 8709965]; GO_process: GO:0051604 - protein maturation [Evidence IMP] [PMID 19433630]; GO_process: GO:0006810 - transport [Evidence IEA]; Pho88p 4464737 PHO88 30035563 PHO88 Sugiyamaella lignohabitans Pho88p XP_018738363.1 4464174 R 796027 CDS AWJ20_3531 30035564 complement(4465267..4466259) B 1 NC_031674.1 Ribonuclease H2 catalytic subunit; removes RNA primers during Okazaki fragment synthesis and errant ribonucleotides misincorporated during DNA replication; role in ribonucleotide excision repair; homolog of RNAse HI; related to human AGS4 which causes Aicardi-Goutieres syndrome; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11029655]; GO_component: GO:0032299 - ribonuclease H2 complex [Evidence IDA] [PMID 14734815]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0004523 - RNA-DNA hybrid ribonuclease activity [Evidence IEA,IEA]; GO_function: GO:0004523 - RNA-DNA hybrid ribonuclease activity [Evidence IDA,IMP] [PMID 14734815]; GO_function: GO:0004523 - RNA-DNA hybrid ribonuclease activity [Evidence ISS] [PMID 9462832]; GO_function: GO:0004519 - endonuclease activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004518 - nuclease activity [Evidence IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_process: GO:0043137 - DNA replication, removal of RNA primer [Evidence IDA,IGI] [PMID 10567561]; GO_process: GO:0016070 - RNA metabolic process [Evidence IEA]; GO_process: GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic [Evidence IEA,IEA]; GO_process: GO:0090305 - nucleic acid phosphodiester bond hydrolysis [Evidence IEA]; Rnh201p 4466259 RNH201 30035564 RNH201 Sugiyamaella lignohabitans Rnh201p XP_018738364.1 4465267 R 796027 CDS AWJ20_3532 30035565 complement(4466447..4467799) B 1 NC_031674.1 Lysyl-tRNA synthetase; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 330225]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004812 - aminoacyl-tRNA ligase activity [Evidence IEA,IEA]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0004824 - lysine-tRNA ligase activity [Evidence IEA,IEA]; GO_function: GO:0004824 - lysine-tRNA ligase activity [Evidence IDA] [PMID 3888626]; GO_function: GO:0004824 - lysine-tRNA ligase activity [Evidence IMP] [PMID 7628447]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_process: GO:0006430 - lysyl-tRNA aminoacylation [Evidence IEA]; GO_process: GO:0006430 - lysyl-tRNA aminoacylation [Evidence IDA] [PMID 3888626]; GO_process: GO:0006430 - lysyl-tRNA aminoacylation [Evidence IMP] [PMID 7628447]; GO_process: GO:0006418 - tRNA aminoacylation for protein translation [Evidence IEA]; GO_process: GO:0006412 - translation [Evidence IEA]; lysine--tRNA ligase KRS1 4467799 KRS1 30035565 KRS1 Sugiyamaella lignohabitans lysine--tRNA ligase KRS1 XP_018738365.1 4466447 R 796027 CDS AWJ20_3533 30035566 complement(4468590..4470851) B 1 NC_031674.1 uncharacterized protein 4470851 30035566 AWJ20_3533 Sugiyamaella lignohabitans uncharacterized protein XP_018738366.1 4468590 R 796027 CDS AWJ20_3534 30035567 4472893..4473435 B 1 NC_031674.1 uncharacterized protein 4473435 30035567 AWJ20_3534 Sugiyamaella lignohabitans uncharacterized protein XP_018738367.1 4472893 D 796027 CDS AWJ20_3535 30035568 complement(4473831..4474346) B 1 NC_031674.1 Rhodanese domain sulfur transferase; accepts persulfite from Nfs1p and transfers it to Uba4p in the pathway for 2-thiolation of the wobble uridine base of tRNAs; also stimulates sulfur transfer by Nfs1p; may be mitochondrially localized; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_function: GO:0004792 - thiosulfate sulfurtransferase activity [Evidence IEA,IEA]; GO_function: GO:0004792 - thiosulfate sulfurtransferase activity [Evidence IDA,IMP] [PMID 19151091]; GO_function: GO:0004792 - thiosulfate sulfurtransferase activity [Evidence ISS] [PMID 9153759]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0002143 - tRNA wobble position uridine thiolation [Evidence IMP] [PMID 19145231]; GO_process: GO:0002143 - tRNA wobble position uridine thiolation [Evidence IMP] [PMID 19151091]; GO_process: GO:0002098 - tRNA wobble uridine modification [Evidence IMP] [PMID 18755837]; Tum1p 4474346 TUM1 30035568 TUM1 Sugiyamaella lignohabitans Tum1p XP_018738368.1 4473831 R 796027 CDS AWJ20_3536 30035569 complement(4474440..4474751) B 1 NC_031674.1 Rhodanese domain sulfur transferase; accepts persulfite from Nfs1p and transfers it to Uba4p in the pathway for 2-thiolation of the wobble uridine base of tRNAs; also stimulates sulfur transfer by Nfs1p; may be mitochondrially localized; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_function: GO:0004792 - thiosulfate sulfurtransferase activity [Evidence IEA,IEA]; GO_function: GO:0004792 - thiosulfate sulfurtransferase activity [Evidence IDA,IMP] [PMID 19151091]; GO_function: GO:0004792 - thiosulfate sulfurtransferase activity [Evidence ISS] [PMID 9153759]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0002143 - tRNA wobble position uridine thiolation [Evidence IMP] [PMID 19145231]; GO_process: GO:0002143 - tRNA wobble position uridine thiolation [Evidence IMP] [PMID 19151091]; GO_process: GO:0002098 - tRNA wobble uridine modification [Evidence IMP] [PMID 18755837]; Tum1p 4474751 TUM1 30035569 TUM1 Sugiyamaella lignohabitans Tum1p XP_018738369.1 4474440 R 796027 CDS AWJ20_3537 30035570 complement(4475108..4477660) B 1 NC_031674.1 Kinesin-related antiparallel sliding motor protein involved in mitotic spindle positioning; sliding activity promotes bipolar spindle assembly and maintenance of genome stability; also inhibits spindle elongation and promotes spindle disassembly in late anaphase; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005881 - cytoplasmic microtubule [Evidence IDA] [PMID 9693366]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA,IEA]; GO_component: GO:0005871 - kinesin complex [Evidence IEA]; GO_component: GO:0005871 - kinesin complex [Evidence TAS] [PMID 9153752]; GO_component: GO:0005874 - microtubule [Evidence IEA]; GO_component: GO:0005880 - nuclear microtubule [Evidence IDA] [PMID 9693366]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0008017 - microtubule binding [Evidence IEA]; GO_function: GO:0003777 - microtubule motor activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0008574 - plus-end-directed microtubule motor activity [Evidence IDA] [PMID 16906145]; GO_function: GO:0008574 - plus-end-directed microtubule motor activity [Evidence IDA] [PMID 16906148]; GO_function: GO:0070463 - tubulin-dependent ATPase activity [Evidence IDA] [PMID 16906148]; GO_process: GO:0000132 - establishment of mitotic spindle orientation [Evidence IMP] [PMID 16906148]; GO_process: GO:0000132 - establishment of mitotic spindle orientation [Evidence IGI,IMP] [PMID 9281582]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0007018 - microtubule-based movement [Evidence IEA]; GO_process: GO:0051228 - mitotic spindle disassembly [Evidence IMP] [PMID 23851487]; GO_process: GO:0051228 - mitotic spindle disassembly [Evidence IMP] [PMID 9813090]; GO_process: GO:0030472 - mitotic spindle organization in nucleus [Evidence IGI,IMP] [PMID 10525539]; GO_process: GO:0031115 - negative regulation of microtubule polymerization [Evidence IMP] [PMID 24616221]; GO_process: GO:0030473 - nuclear migration along microtubule [Evidence IMP] [PMID 9693366]; GO_process: GO:0070462 - plus-end specific microtubule depolymerization [Evidence IDA] [PMID 16906145]; GO_process: GO:0070462 - plus-end specific microtubule depolymerization [Evidence IDA] [PMID 16906148]; GO_process: GO:0032888 - regulation of mitotic spindle elongation [Evidence IMP] [PMID 24616221]; GO_process: GO:0090307 - spindle assembly involved in mitosis [Evidence IMP] [PMID 23851487]; tubulin-dependent ATPase KIP3 4477660 KIP3 30035570 KIP3 Sugiyamaella lignohabitans tubulin-dependent ATPase KIP3 XP_018738370.1 4475108 R 796027 CDS AWJ20_3538 30035571 4478713..4479111 B 1 NC_031674.1 uncharacterized protein 4479111 30035571 AWJ20_3538 Sugiyamaella lignohabitans uncharacterized protein XP_018738371.1 4478713 D 796027 CDS AWJ20_3539 30035572 complement(4479347..4480228) B 1 NC_031674.1 uncharacterized protein 4480228 30035572 AWJ20_3539 Sugiyamaella lignohabitans uncharacterized protein XP_018738372.1 4479347 R 796027 CDS AWJ20_3540 30035574 complement(join(4483563..4486768,4487549..4487687)) B 1 NC_031674.1 uncharacterized protein 4487687 30035574 AWJ20_3540 Sugiyamaella lignohabitans uncharacterized protein XP_018738373.1 4483563 R 796027 CDS AWJ20_3541 30035575 complement(4488426..4489052) B 1 NC_031674.1 collagen-like protein 4489052 30035575 AWJ20_3541 Sugiyamaella lignohabitans collagen-like protein XP_018738374.1 4488426 R 796027 CDS AWJ20_3542 30035576 4489948..4491060 B 1 NC_031674.1 Phosphatidylinositol transfer protein (PITP); controlled by the multiple drug resistance regulator Pdr1p; localizes to lipid particles and microsomes; controls levels of various lipids, may regulate lipid synthesis; homologous to Pdr17p; protein abundance increases in response to DNA replication stress; GO_component: GO:0071944 - cell periphery [Evidence IDA] [PMID 12869188]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0043231 - intracellular membrane-bounded organelle [Evidence IEA]; GO_component: GO:0005811 - lipid particle [Evidence IEA,IEA]; GO_component: GO:0005811 - lipid particle [Evidence IDA] [PMID 12869188]; GO_component: GO:0005811 - lipid particle [Evidence IDA] [PMID 24403601]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0031090 - organelle membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 16622836]; GO_function: GO:0008525 - phosphatidylcholine transporter activity [Evidence IDA] [PMID 10848624]; GO_function: GO:0008526 - phosphatidylinositol transporter activity [Evidence IDA] [PMID 10848624]; GO_function: GO:0008526 - phosphatidylinositol transporter activity [Evidence IGI,IMP] [PMID 9890948]; GO_process: GO:0006869 - lipid transport [Evidence IEA]; GO_process: GO:0043942 - negative regulation of sexual sporulation resulting in formation of a cellular spore [Evidence IMP] [PMID 24403601]; GO_process: GO:0008654 - phospholipid biosynthetic process [Evidence IGI] [PMID 9890948]; GO_process: GO:0015914 - phospholipid transport [Evidence IDA] [PMID 10848624]; GO_process: GO:0015914 - phospholipid transport [Evidence IGI,IMP] [PMID 9890948]; GO_process: GO:0042493 - response to drug [Evidence IGI] [PMID 9890948]; GO_process: GO:0016126 - sterol biosynthetic process [Evidence IGI] [PMID 9890948]; GO_process: GO:0006810 - transport [Evidence IEA]; Pdr16p 4491060 PDR16 30035576 PDR16 Sugiyamaella lignohabitans Pdr16p XP_018738375.1 4489948 D 796027 CDS AWJ20_3543 30035577 4491452..4497295 B 1 NC_031674.1 RNA-dependent ATPase RNA helicase (DEIH box); required for disruption of U4/U6 base-pairing in native snRNPs to activate the spliceosome for catalysis; homologous to human U5-200kD; GO_component: GO:0046540 - U4/U6 x U5 tri-snRNP complex [Evidence IDA] [PMID 10377396]; GO_component: GO:0046540 - U4/U6 x U5 tri-snRNP complex [Evidence IDA] [PMID 10449419]; GO_component: GO:0046540 - U4/U6 x U5 tri-snRNP complex [Evidence IDA] [PMID 8670905]; GO_component: GO:0005682 - U5 snRNP [Evidence IDA] [PMID 11720284]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_component: GO:0005681 - spliceosomal complex [Evidence IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004004 - ATP-dependent RNA helicase activity [Evidence IDA,IMP] [PMID 8649518]; GO_function: GO:0004004 - ATP-dependent RNA helicase activity [Evidence IMP] [PMID 9705931]; GO_function: GO:0008026 - ATP-dependent helicase activity [Evidence IEA]; GO_function: GO:0004386 - helicase activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0008380 - RNA splicing [Evidence IEA]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0000388 - spliceosome conformational change to release U4 (or U4atac) and U1 (or U11) [Evidence IMP] [PMID 9705931]; Brr2p 4497295 BRR2 30035577 BRR2 Sugiyamaella lignohabitans Brr2p XP_018738376.1 4491452 D 796027 CDS AWJ20_3544 30035578 complement(4498244..4502704) B 1 NC_031674.1 Plasma membrane ATP-binding cassette (ABC) transporter; multidrug transporter actively regulated by Pdr1p; also involved in steroid transport, cation resistance, and cellular detoxification during exponential growth; PDR5 has a paralog, PDR15, that arose from the whole genome duplication; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 12469340]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 8810273]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016887 - ATPase activity [Evidence IEA]; GO_function: GO:0042626 - ATPase activity, coupled to transmembrane movement of substances [Evidence IEA]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_function: GO:0008559 - xenobiotic-transporting ATPase activity [Evidence IDA] [PMID 21207971]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0015893 - drug transport [Evidence TAS] [PMID 11421285]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0046677 - response to antibiotic [Evidence IEA]; GO_process: GO:0046898 - response to cycloheximide [Evidence IEA]; GO_process: GO:0042493 - response to drug [Evidence TAS] [PMID 11421285]; GO_process: GO:0042493 - response to drug [Evidence IMP] [PMID 17881724]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; ATP-binding cassette multidrug transporter PDR5 4502704 PDR5 30035578 PDR5 Sugiyamaella lignohabitans ATP-binding cassette multidrug transporter PDR5 XP_018738377.1 4498244 R 796027 CDS AWJ20_3545 30035579 4508307..4510415 B 1 NC_031674.1 Usp (universal stress protein) family protein 4510415 30035579 AWJ20_3545 Sugiyamaella lignohabitans Usp (universal stress protein) family protein XP_018738378.1 4508307 D 796027 CDS AWJ20_3546 30035580 complement(4510574..4511746) B 1 NC_031674.1 uncharacterized protein 4511746 30035580 AWJ20_3546 Sugiyamaella lignohabitans uncharacterized protein XP_018738379.1 4510574 R 796027 CDS AWJ20_3547 30035581 complement(4512201..4513796) B 1 NC_031674.1 uncharacterized protein 4513796 30035581 AWJ20_3547 Sugiyamaella lignohabitans uncharacterized protein XP_018738380.1 4512201 R 796027 CDS AWJ20_3548 30035582 complement(4514921..4515529) B 1 NC_031674.1 glucose-inactivated glycerol proton symporter STL1 4515529 STL1 30035582 STL1 Sugiyamaella lignohabitans glucose-inactivated glycerol proton symporter STL1 XP_018738381.1 4514921 R 796027 CDS AWJ20_3549 30035583 4517012..4518019 B 1 NC_031674.1 Glyoxylate reductase; null mutation results in increased biomass after diauxic shift; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0051287 - NAD binding [Evidence IEA]; GO_function: GO:0048037 - cofactor binding [Evidence IEA]; GO_function: GO:0047964 - glyoxylate reductase activity [Evidence IEA]; GO_function: GO:0047964 - glyoxylate reductase activity [Evidence IMP] [PMID 17173333]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor [Evidence IEA]; GO_function: GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor [Evidence ISS] [PMID 9341119]; GO_process: GO:0009436 - glyoxylate catabolic process [Evidence IMP] [PMID 17173333]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence ISS] [PMID 9341119]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; Gor1p 4518019 GOR1 30035583 GOR1 Sugiyamaella lignohabitans Gor1p XP_018738382.1 4517012 D 796027 CDS AWJ20_3550 30035585 complement(4518113..4518796) B 1 NC_031674.1 glucose-inactivated glycerol proton symporter STL1 4518796 STL1 30035585 STL1 Sugiyamaella lignohabitans glucose-inactivated glycerol proton symporter STL1 XP_018738383.1 4518113 R 796027 CDS AWJ20_3551 30035586 complement(4518845..4519705) B 1 NC_031674.1 glucose-inactivated glycerol proton symporter STL1 4519705 STL1 30035586 STL1 Sugiyamaella lignohabitans glucose-inactivated glycerol proton symporter STL1 XP_018738384.1 4518845 R 796027 CDS AWJ20_3552 30035587 complement(4520223..4522304) B 1 NC_031674.1 uncharacterized protein 4522304 30035587 AWJ20_3552 Sugiyamaella lignohabitans uncharacterized protein XP_018738385.1 4520223 R 796027 CDS AWJ20_3553 30035588 complement(4522807..4524342) B 1 NC_031674.1 Plasma membrane transporter of the major facilitator superfamily; member of the 12-spanner drug:H(+) antiporter DHA1 family; confers resistance to short-chain monocarboxylic acids and quinidine; involved in the excretion of excess amino acids; AQR1 has a paralog, QDR1, that arose from the whole genome duplication; relocalizes from plasma membrane to cytoplasm upon DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 11922628]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 22842922]; GO_function: GO:0015238 - drug transmembrane transporter activity [Evidence IMP] [PMID 11922628]; GO_function: GO:0008028 - monocarboxylic acid transmembrane transporter activity [Evidence IMP] [PMID 11922628]; GO_function: GO:0005215 - transporter activity [Evidence IEA]; GO_process: GO:0032973 - amino acid export [Evidence IGI,IMP] [PMID 15590823]; GO_process: GO:0006855 - drug transmembrane transport [Evidence IMP] [PMID 11922628]; GO_process: GO:0015718 - monocarboxylic acid transport [Evidence IMP] [PMID 11922628]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; Aqr1p 4524342 AQR1 30035588 AQR1 Sugiyamaella lignohabitans Aqr1p XP_018738386.1 4522807 R 796027 CDS AWJ20_3554 30035589 4528603..4529868 B 1 NC_031674.1 uncharacterized protein 4529868 30035589 AWJ20_3554 Sugiyamaella lignohabitans uncharacterized protein XP_018738387.1 4528603 D 796027 CDS AWJ20_3555 30035590 complement(4530742..4532286) B 1 NC_031674.1 Purine-cytosine permease; mediates purine (adenine, guanine, and hypoxanthine) and cytosine accumulation; relative distribution to the vacuole increases upon DNA replication stress; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 22842922]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 22842922]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 8267570]; GO_function: GO:0015212 - cytidine transmembrane transporter activity [Evidence IDA,IMP] [PMID 10501935]; GO_function: GO:0015205 - nucleobase transmembrane transporter activity [Evidence IEA]; GO_function: GO:0015205 - nucleobase transmembrane transporter activity [Evidence IDA] [PMID 9092500]; GO_function: GO:0005215 - transporter activity [Evidence IEA]; GO_process: GO:0015861 - cytidine transport [Evidence IDA,IMP] [PMID 10501935]; GO_process: GO:0015856 - cytosine transport [Evidence IDA] [PMID 9092500]; GO_process: GO:0015851 - nucleobase transport [Evidence IEA]; GO_process: GO:0072530 - purine-containing compound transmembrane transport [Evidence IDA] [PMID 9092500]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; Fcy2p 4532286 FCY2 30035590 FCY2 Sugiyamaella lignohabitans Fcy2p XP_018738388.1 4530742 R 796027 CDS AWJ20_3556 30035591 4535351..4536499 B 1 NC_031674.1 Low-affinity zinc transporter of the plasma membrane; transcription is induced under low-zinc conditions by the Zap1p transcription factor; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IMP,ISS] [PMID 8798516]; GO_function: GO:0000007 - low-affinity zinc ion transmembrane transporter activity [Evidence IMP,ISS] [PMID 8798516]; GO_function: GO:0046873 - metal ion transmembrane transporter activity [Evidence IEA]; GO_function: GO:0005385 - zinc ion transmembrane transporter activity [Evidence IEA]; GO_process: GO:0006811 - ion transport [Evidence IEA]; GO_process: GO:0006831 - low-affinity zinc ion transport [Evidence IMP,ISS] [PMID 8798516]; GO_process: GO:0030001 - metal ion transport [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0071577 - zinc ion transmembrane transport [Evidence IEA]; GO_process: GO:0006829 - zinc ion transport [Evidence IEA]; low-affinity Zn(2+) transporter ZRT2 4536499 ZRT2 30035591 ZRT2 Sugiyamaella lignohabitans low-affinity Zn(2+) transporter ZRT2 XP_018738389.1 4535351 D 796027 CDS AWJ20_3557 30035592 complement(4536684..4537895) B 1 NC_031674.1 Subunit of a Golgi mannosyltransferase complex; this complex also contains Anp1p, Mnn9p, Mnn10p, and Hoc1p, and mediates elongation of the polysaccharide mannan backbone; has homology to Mnn10p; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA,IEA]; GO_component: GO:0000136 - alpha-1,6-mannosyltransferase complex [Evidence IPI] [PMID 9430634]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0000009 - alpha-1,6-mannosyltransferase activity [Evidence IDA] [PMID 10635561]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA]; GO_function: GO:0016758 - transferase activity, transferring hexosyl groups [Evidence IEA]; GO_process: GO:0006487 - protein N-linked glycosylation [Evidence IMP] [PMID 23210626]; GO_process: GO:0006486 - protein glycosylation [Evidence IDA,IMP] [PMID 10635561]; Mnn11p 4537895 MNN11 30035592 MNN11 Sugiyamaella lignohabitans Mnn11p XP_018738390.1 4536684 R 796027 CDS AWJ20_3558 30035593 complement(4539017..4542094) B 1 NC_031674.1 transcription regulator CYC8 4542094 CYC8 30035593 CYC8 Sugiyamaella lignohabitans transcription regulator CYC8 XP_018738391.1 4539017 R 796027 CDS AWJ20_3559 30035594 complement(4544460..4547015) B 1 NC_031674.1 Predominantly nucleolar DEAH-box ATP-dependent RNA helicase; required for 18S rRNA synthesis; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 10982841]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0008026 - ATP-dependent helicase activity [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003724 - RNA helicase activity [Evidence IDA] [PMID 10982841]; GO_function: GO:0004386 - helicase activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0000462 - maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 16449634]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IDA,TAS] [PMID 10982841]; Dhr2p 4547015 DHR2 30035594 DHR2 Sugiyamaella lignohabitans Dhr2p XP_018738392.1 4544460 R 796027 CDS AWJ20_3560 30035596 4548419..4550350 B 1 NC_031674.1 Plasma membrane hypothetical protein; involved in the proteolytic activation of Rim101p in response to alkaline pH; interacts with Rim21p and Dfg16p to form a pH-sensing complex in the Rim101 pathway and is required to maintain Rim21p levels; has similarity to A. nidulans PalI; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 23019326]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0030437 - ascospore formation [Evidence IMP] [PMID 8417990]; Rim9p 4550350 RIM9 30035596 RIM9 Sugiyamaella lignohabitans Rim9p XP_018738393.1 4548419 D 796027 CDS AWJ20_3561 30035597 complement(4550461..4553184) B 1 NC_031674.1 Proton-coupled oligopeptide transporter of the plasma membrane; also transports glutathione and phytochelatin; member of the OPT family; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0005887 - integral component of plasma membrane [Evidence IMP,ISS] [PMID 10788431]; GO_component: GO:0005887 - integral component of plasma membrane [Evidence IDA] [PMID 19496824]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_function: GO:0015198 - oligopeptide transporter activity [Evidence IMP] [PMID 10652283]; GO_function: GO:0005427 - proton-dependent oligopeptide secondary active transmembrane transporter activity [Evidence IDA] [PMID 16149917]; GO_process: GO:0006857 - oligopeptide transport [Evidence IDA] [PMID 16149917]; GO_process: GO:0015833 - peptide transport [Evidence IEA]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006790 - sulfur compound metabolic process [Evidence IEP] [PMID 11862495]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; oligopeptide transporter OPT1 4553184 OPT1 30035597 OPT1 Sugiyamaella lignohabitans oligopeptide transporter OPT1 XP_018738394.1 4550461 R 796027 CDS AWJ20_3562 30035598 complement(4555419..4556243) B 1 NC_031674.1 Putative transmembrane protein involved in export of ammonia; ammonia is a starvation signal that promotes cell death in aging colonies; phosphorylated in mitochondria; member of the TC 9.B.33 YaaH family; homolog of Y. lipolytica Gpr1p; ATO2 has a paralog, ADY2, that arose from the whole genome duplication; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 17395151]; GO_function: GO:0008519 - ammonium transmembrane transporter activity [Evidence IMP] [PMID 12429834]; GO_process: GO:0015696 - ammonium transport [Evidence IEA]; GO_process: GO:0015696 - ammonium transport [Evidence IEP,IMP] [PMID 12429834]; GO_process: GO:0006811 - ion transport [Evidence IEA]; GO_process: GO:0019740 - nitrogen utilization [Evidence IMP] [PMID 12429834]; GO_process: GO:0006810 - transport [Evidence IEA]; putative ammonium permease ATO2 4556243 ATO2 30035598 ATO2 Sugiyamaella lignohabitans putative ammonium permease ATO2 XP_018738395.1 4555419 R 796027 CDS AWJ20_3563 30035599 complement(4558442..4559263) B 1 NC_031674.1 Putative transmembrane protein involved in export of ammonia; ammonia is a starvation signal that promotes cell death in aging colonies; phosphorylated in mitochondria; member of the TC 9.B.33 YaaH family; homolog of Y. lipolytica Gpr1p; ATO2 has a paralog, ADY2, that arose from the whole genome duplication; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 17395151]; GO_function: GO:0008519 - ammonium transmembrane transporter activity [Evidence IMP] [PMID 12429834]; GO_process: GO:0015696 - ammonium transport [Evidence IEA]; GO_process: GO:0015696 - ammonium transport [Evidence IEP,IMP] [PMID 12429834]; GO_process: GO:0006811 - ion transport [Evidence IEA]; GO_process: GO:0019740 - nitrogen utilization [Evidence IMP] [PMID 12429834]; GO_process: GO:0006810 - transport [Evidence IEA]; putative ammonium permease ATO2 4559263 ATO2 30035599 ATO2 Sugiyamaella lignohabitans putative ammonium permease ATO2 XP_018738396.1 4558442 R 796027 CDS AWJ20_3564 30035600 complement(4561506..4562636) B 1 NC_031674.1 Component of the septin ring, required for cytokinesis; septins are GTP-binding proteins that assemble into rod-like hetero-oligomers that can associate to form filaments; septin rings at the mother-bud neck act as scaffolds for recruiting cell division factors and as barriers to prevent diffusion of specific proteins between mother and daughter cells; N-terminus interacts with phosphatidylinositol-4,5-bisphosphate; protein abundance increases under DNA damage stress; GO_component: GO:0042764 - ascospore-type prospore [Evidence IDA] [PMID 18701287]; GO_component: GO:0005935 - cellular bud neck [Evidence IEA]; GO_component: GO:0000144 - cellular bud neck septin ring [Evidence IDA] [PMID 9884239]; GO_component: GO:0001400 - mating projection base [Evidence IDA] [PMID 18552279]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 19053807]; GO_component: GO:0072687 - meiotic spindle [Evidence IDA] [PMID 18826657]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005628 - prospore membrane [Evidence IDA] [PMID 18826657]; GO_component: GO:0005628 - prospore membrane [Evidence IDA] [PMID 24390141]; GO_component: GO:0031105 - septin complex [Evidence IEA]; GO_component: GO:0031105 - septin complex [Evidence IDA] [PMID 18550837]; GO_component: GO:0031105 - septin complex [Evidence IPI] [PMID 9813094]; GO_component: GO:0032160 - septin filament array [Evidence IDA] [PMID 15282341]; GO_component: GO:0005876 - spindle microtubule [Evidence IDA] [PMID 18826657]; GO_function: GO:0005545 - 1-phosphatidylinositol binding [Evidence IDA] [PMID 12665577]; GO_function: GO:0005525 - GTP binding [Evidence IEA,IEA]; GO_function: GO:0003924 - GTPase activity [Evidence IDA] [PMID 14993234]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0032947 - protein complex scaffold [Evidence IDA] [PMID 15901837]; GO_function: GO:0005198 - structural molecule activity [Evidence IDA] [PMID 18550837]; GO_process: GO:0007049 - cell cycle [Evidence IEA,IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0010458 - exit from mitosis [Evidence IMP] [PMID 12699621]; GO_process: GO:0030011 - maintenance of cell polarity [Evidence IC] [PMID 10882120]; GO_process: GO:0000921 - septin ring assembly [Evidence IMP] [PMID 14993234]; GO_process: GO:0043934 - sporulation [Evidence IDA] [PMID 18701287]; septin CDC10 4562636 CDC10 30035600 CDC10 Sugiyamaella lignohabitans septin CDC10 XP_018738397.1 4561506 R 796027 CDS AWJ20_3565 30035601 4563754..4564305 B 1 NC_031674.1 Mitochondrial ribosomal protein of the large subunit; protein abundance increases in response to DNA replication stress; GO_component: GO:0015934 - large ribosomal subunit [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IDA] [PMID 16239145]; GO_component: GO:0005762 - mitochondrial large ribosomal subunit [Evidence IDA] [PMID 2060626]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IDA] [PMID 2060626]; GO_process: GO:0032543 - mitochondrial translation [Evidence IC] [PMID 2060626]; GO_process: GO:0006412 - translation [Evidence IEA]; mitochondrial 54S ribosomal protein YmL32 4564305 MRPL32 30035601 MRPL32 Sugiyamaella lignohabitans mitochondrial 54S ribosomal protein YmL32 XP_018738398.1 4563754 D 796027 CDS AWJ20_3566 30035602 4564619..4566085 B 1 NC_031674.1 uncharacterized protein 4566085 30035602 AWJ20_3566 Sugiyamaella lignohabitans uncharacterized protein XP_018738399.1 4564619 D 796027 CDS AWJ20_3567 30035603 complement(4566335..4567198) B 1 NC_031674.1 Protein with similarity to a family of flavodoxin-like proteins; induced by oxidative stress in a Yap1p dependent manner; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies; protein abundance increases in response to DNA replication stress; PST2 has a paralog, RFS1, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005576 - extracellular region [Evidence IEA,IEA]; GO_component: GO:0045121 - membrane raft [Evidence IDA] [PMID 19064668]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 16622836]; GO_function: GO:0010181 - FMN binding [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0045892 - negative regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; Pst2p 4567198 PST2 30035603 PST2 Sugiyamaella lignohabitans Pst2p XP_018738400.1 4566335 R 796027 CDS AWJ20_3568 30035604 4570195..4570806 B 1 NC_031674.1 hypothetical protein; has sequence and structural similarity to flavodoxins; predicted to be palmitoylated; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 21442317]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0045121 - membrane raft [Evidence IEA]; GO_component: GO:0045121 - membrane raft [Evidence IDA] [PMID 19064668]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 16622836]; GO_function: GO:0010181 - FMN binding [Evidence IEA]; GO_function: GO:0009055 - electron carrier activity [Evidence ISS] [PMID 7756978]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0045892 - negative regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; Ycp4p 4570806 YCP4 30035604 YCP4 Sugiyamaella lignohabitans Ycp4p XP_018738401.1 4570195 D 796027 CDS AWJ20_3569 30035605 complement(4570366..4570728) B 1 NC_031674.1 uncharacterized protein 4570728 30035605 AWJ20_3569 Sugiyamaella lignohabitans uncharacterized protein XP_018738402.1 4570366 R 796027 CDS AWJ20_3570 30035607 4571658..4572620 B 1 NC_031674.1 Plasma membrane ATP-binding cassette (ABC) transporter; weak-acid-inducible multidrug transporter required for weak organic acid resistance; induced by sorbate and benzoate and regulated by War1p; mutants exhibit sorbate hypersensitivity; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 9687494]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016887 - ATPase activity [Evidence IEA]; GO_function: GO:0042626 - ATPase activity, coupled to transmembrane movement of substances [Evidence IEA]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_function: GO:0005342 - organic acid transmembrane transporter activity [Evidence IDA] [PMID 10419965]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0015849 - organic acid transport [Evidence IDA] [PMID 10419965]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; ATP-binding cassette multidrug transporter PDR12 4572620 PDR12 30035607 PDR12 Sugiyamaella lignohabitans ATP-binding cassette multidrug transporter PDR12 XP_018738403.1 4571658 D 796027 CDS AWJ20_3571 30035608 4572761..4576261 B 1 NC_031674.1 Plasma membrane ATP-binding cassette (ABC) transporter; multidrug transporter involved in multidrug resistance and resistance to singlet oxygen species; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 12469340]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016887 - ATPase activity [Evidence IEA]; GO_function: GO:0042626 - ATPase activity, coupled to transmembrane movement of substances [Evidence IEA]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_function: GO:0008559 - xenobiotic-transporting ATPase activity [Evidence TAS] [PMID 10581358]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0042493 - response to drug [Evidence TAS] [PMID 11421285]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; ATP-binding cassette transporter SNQ2 4576261 SNQ2 30035608 SNQ2 Sugiyamaella lignohabitans ATP-binding cassette transporter SNQ2 XP_018738404.1 4572761 D 796027 CDS AWJ20_3572 30035609 complement(4579117..4580211) B 1 NC_031674.1 Syntaxin-like t-SNARE; forms a complex with Tlg1p and Vti1p and mediates fusion of endosome-derived vesicles with the late Golgi; binds Vps45p, which prevents Tlg2p degradation and also facilitates t-SNARE complex formation; homologous to mammalian SNARE protein syntaxin 16 (Sx16); GO_component: GO:0005794 - Golgi apparatus [Evidence IEA,IEA]; GO_component: GO:0031201 - SNARE complex [Evidence IPI] [PMID 10397773]; GO_component: GO:0005768 - endosome [Evidence IEA]; GO_component: GO:0010008 - endosome membrane [Evidence IEA]; GO_component: GO:0031303 - integral component of endosome membrane [Evidence IDA] [PMID 9565594]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005802 - trans-Golgi network [Evidence IDA] [PMID 9427746]; GO_function: GO:0005484 - SNAP receptor activity [Evidence IEA]; GO_function: GO:0005484 - SNAP receptor activity [Evidence IDA] [PMID 11739407]; GO_process: GO:0032258 - CVT pathway [Evidence IMP] [PMID 10545112]; GO_process: GO:0006896 - Golgi to vacuole transport [Evidence IGI] [PMID 18753406]; GO_process: GO:0006897 - endocytosis [Evidence IMP] [PMID 9427746]; GO_process: GO:0006673 - inositolphosphoceramide metabolic process [Evidence IGI,IMP] [PMID 18753406]; GO_process: GO:0006886 - intracellular protein transport [Evidence IEA]; GO_process: GO:0006675 - mannosyl-inositol phosphorylceramide metabolic process [Evidence IGI,IMP] [PMID 18753406]; GO_process: GO:0032527 - protein exit from endoplasmic reticulum [Evidence IGI] [PMID 18753406]; GO_process: GO:0009306 - protein secretion [Evidence IMP] [PMID 22753847]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0006906 - vesicle fusion [Evidence IDA] [PMID 11739407]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IEA]; Tlg2p 4580211 TLG2 30035609 TLG2 Sugiyamaella lignohabitans Tlg2p XP_018738405.1 4579117 R 796027 CDS AWJ20_3573 30035610 4580693..4580977 B 1 NC_031674.1 RNA polymerase I second largest subunit A135; GO_component: GO:0005736 - DNA-directed RNA polymerase I complex [Evidence IDA] [PMID 11486042]; GO_component: GO:0005736 - DNA-directed RNA polymerase I complex [Evidence IDA] [PMID 9837969]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0003899 - DNA-directed RNA polymerase activity [Evidence IEA,IEA,IEA]; GO_function: GO:0001054 - RNA polymerase I activity [Evidence IDA] [PMID 9837969]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016779 - nucleotidyltransferase activity [Evidence IEA]; GO_function: GO:0032549 - ribonucleoside binding [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; GO_process: GO:0006360 - transcription from RNA polymerase I promoter [Evidence IDA] [PMID 9837969]; GO_process: GO:0042790 - transcription of nuclear large rRNA transcript from RNA polymerase I promoter [Evidence IGI] [PMID 2023944]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; DNA-directed RNA polymerase I core subunit RPA135 4580977 RPA135 30035610 RPA135 Sugiyamaella lignohabitans DNA-directed RNA polymerase I core subunit RPA135 XP_018738406.1 4580693 D 796027 CDS AWJ20_3574 30035611 4581076..4584246 B 1 NC_031674.1 RNA polymerase I second largest subunit A135; GO_component: GO:0005736 - DNA-directed RNA polymerase I complex [Evidence IDA] [PMID 11486042]; GO_component: GO:0005736 - DNA-directed RNA polymerase I complex [Evidence IDA] [PMID 9837969]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0003899 - DNA-directed RNA polymerase activity [Evidence IEA,IEA,IEA]; GO_function: GO:0001054 - RNA polymerase I activity [Evidence IDA] [PMID 9837969]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016779 - nucleotidyltransferase activity [Evidence IEA]; GO_function: GO:0032549 - ribonucleoside binding [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; GO_process: GO:0006360 - transcription from RNA polymerase I promoter [Evidence IDA] [PMID 9837969]; GO_process: GO:0042790 - transcription of nuclear large rRNA transcript from RNA polymerase I promoter [Evidence IGI] [PMID 2023944]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; DNA-directed RNA polymerase I core subunit RPA135 4584246 RPA135 30035611 RPA135 Sugiyamaella lignohabitans DNA-directed RNA polymerase I core subunit RPA135 XP_018738407.1 4581076 D 796027 CDS AWJ20_3575 30035612 4586388..4588928 B 1 NC_031674.1 uncharacterized protein 4588928 30035612 AWJ20_3575 Sugiyamaella lignohabitans uncharacterized protein XP_018738408.1 4586388 D 796027 CDS AWJ20_3576 30035613 complement(4589019..4590059) B 1 NC_031674.1 Origin recognition complex subunit 6 4590059 ORC6 30035613 ORC6 Sugiyamaella lignohabitans Origin recognition complex subunit 6 XP_018738409.1 4589019 R 796027 CDS AWJ20_3577 30035614 4590979..4592283 B 1 NC_031674.1 similar to S.kluyveri pyd3 (AAK60518) beta-alanine synthase involved in pyrimidine catabolism; allele of CaO19.1369; putative beta alanine synthase 4592283 PYD3 30035614 PYD3 Sugiyamaella lignohabitans putative beta alanine synthase XP_018738410.1 4590979 D 796027 CDS AWJ20_3578 30035615 complement(4592348..4592872) B 1 NC_031674.1 uncharacterized protein 4592872 30035615 AWJ20_3578 Sugiyamaella lignohabitans uncharacterized protein XP_018738411.1 4592348 R 796027 CDS AWJ20_3579 30035616 4593411..4594277 B 1 NC_031674.1 Arginyl-tRNA-protein transferase; catalyzes post-translational conjugation of arginine to the amino termini of acceptor proteins which are then subject to degradation via the N-end rule pathway; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0004057 - arginyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0004057 - arginyltransferase activity [Evidence IDA,IMP] [PMID 2185248]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016746 - transferase activity, transferring acyl groups [Evidence IEA]; GO_process: GO:0016598 - protein arginylation [Evidence IEA]; GO_process: GO:0016598 - protein arginylation [Evidence IDA,IMP] [PMID 2185248]; Ate1p 4594277 ATE1 30035616 ATE1 Sugiyamaella lignohabitans Ate1p XP_018738412.1 4593411 D 796027 CDS AWJ20_3580 30035618 complement(4594392..4595315) B 1 NC_031674.1 Component of the cytosolic Fe-S protein assembly (CIA) machinery; contains an Fe-S cluster that receives electrons from NADPH via the action of Tah18pin an early step in the CIA pathway; ortholog of human Ciapin1; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 18625724]; GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IEA,IEA]; GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IDA] [PMID 18625724]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_function: GO:0051537 - 2 iron, 2 sulfur cluster binding [Evidence IEA,IEA]; GO_function: GO:0009055 - electron carrier activity [Evidence IEA]; GO_function: GO:0009055 - electron carrier activity [Evidence IMP] [PMID 20802492]; GO_function: GO:0051536 - iron-sulfur cluster binding [Evidence IEA,IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_process: GO:0006915 - apoptotic process [Evidence IEA,IEA]; GO_process: GO:0010421 - hydrogen peroxide-mediated programmed cell death [Evidence IEA]; GO_process: GO:0016226 - iron-sulfur cluster assembly [Evidence IEA,IEA]; GO_process: GO:0016226 - iron-sulfur cluster assembly [Evidence IMP] [PMID 18625724]; GO_process: GO:0016226 - iron-sulfur cluster assembly [Evidence IMP] [PMID 20802492]; GO_process: GO:0043066 - negative regulation of apoptotic process [Evidence IEA]; Dre2p 4595315 DRE2 30035618 DRE2 Sugiyamaella lignohabitans Dre2p XP_018738413.1 4594392 R 796027 CDS AWJ20_3581 30035619 complement(4597039..4599096) B 1 NC_031674.1 Acyltransferase that catalyzes diacylglycerol esterification; one of several acyltransferases that contribute to triglyceride synthesis; Lro1p and Dga1p can O-acylate ceramides; putative homolog of human lecithin cholesterol acyltransferase; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0005811 - lipid particle [Evidence IDA] [PMID 22454508]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0097038 - perinuclear endoplasmic reticulum [Evidence IDA] [PMID 22454508]; GO_function: GO:0008374 - O-acyltransferase activity [Evidence IEA]; GO_function: GO:0046027 - phospholipid:diacylglycerol acyltransferase activity [Evidence IEA]; GO_function: GO:0046027 - phospholipid:diacylglycerol acyltransferase activity [Evidence IDA] [PMID 10747858]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016746 - transferase activity, transferring acyl groups [Evidence IEA]; GO_process: GO:0006672 - ceramide metabolic process [Evidence IDA,IMP] [PMID 22738231]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0019915 - lipid storage [Evidence IDA,IMP] [PMID 10747858]; GO_process: GO:0019432 - triglyceride biosynthetic process [Evidence IDA,IMP] [PMID 10747858]; phospholipid:diacylglycerol acyltransferase 4599096 LRO1 30035619 LRO1 Sugiyamaella lignohabitans phospholipid:diacylglycerol acyltransferase XP_018738414.1 4597039 R 796027 CDS AWJ20_3582 30035620 4599928..4601832 B 1 NC_031674.1 uncharacterized protein 4601832 30035620 AWJ20_3582 Sugiyamaella lignohabitans uncharacterized protein XP_018738415.1 4599928 D 796027 CDS AWJ20_3583 30035621 4603049..4604659 B 1 NC_031674.1 serine/threonine protein kinase YAK1 4604659 YAK1 30035621 YAK1 Sugiyamaella lignohabitans serine/threonine protein kinase YAK1 XP_018738416.1 4603049 D 796027 CDS AWJ20_3584 30035622 4604760..4606598 B 1 NC_031674.1 serine/threonine protein kinase YAK1 4606598 YAK1 30035622 YAK1 Sugiyamaella lignohabitans serine/threonine protein kinase YAK1 XP_018738417.1 4604760 D 796027 CDS AWJ20_3585 30035623 complement(4607864..4608385) B 1 NC_031674.1 Ubiquitin-conjugating enzyme (E2); catalytic subunit of SCF ubiquitin-protein ligase complex (together with Skp1p, Rbx1p, Cdc53p, and an F-box protein) that regulates cell cycle progression by targeting key substrates for degradation; protein abundance increases in response to DNA replication stress; GO_component: GO:0019005 - SCF ubiquitin ligase complex [Evidence IDA,IPI] [PMID 9346238]; GO_component: GO:0019005 - SCF ubiquitin ligase complex [Evidence IMP] [PMID 9736614]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11080155]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11080155]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 8164658]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0016881 - acid-amino acid ligase activity [Evidence IEA]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0042803 - protein homodimerization activity [Evidence IDA,IMP] [PMID 7929378]; GO_function: GO:0061630 - ubiquitin protein ligase activity [Evidence IDA] [PMID 9346238]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence IEA]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence IDA,IMP,ISS] [PMID 2842867]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence IDA] [PMID 9346239]; GO_process: GO:0006260 - DNA replication [Evidence IEA]; GO_process: GO:0000082 - G1/S transition of mitotic cell cycle [Evidence TAS] [PMID 9346231]; GO_process: GO:0000086 - G2/M transition of mitotic cell cycle [Evidence IGI] [PMID 7954792]; GO_process: GO:0000086 - G2/M transition of mitotic cell cycle [Evidence IGI] [PMID 9736614]; GO_process: GO:0031146 - SCF-dependent proteasomal ubiquitin-dependent protein catabolic process [Evidence IDA] [PMID 9346238]; GO_process: GO:0031146 - SCF-dependent proteasomal ubiquitin-dependent protein catabolic process [Evidence IDA] [PMID 9346239]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0051865 - protein autoubiquitination [Evidence IDA,IMP] [PMID 8383676]; GO_process: GO:0000209 - protein polyubiquitination [Evidence IDA] [PMID 1848239]; GO_process: GO:0016567 - protein ubiquitination [Evidence IEA]; GO_process: GO:0042787 - protein ubiquitination involved in ubiquitin-dependent protein catabolic process [Evidence IDA] [PMID 9346238]; GO_process: GO:0042787 - protein ubiquitination involved in ubiquitin-dependent protein catabolic process [Evidence IDA] [PMID 9346239]; SCF E2 ubiquitin-protein ligase catalytic subunit CDC34 4608385 CDC34 30035623 CDC34 Sugiyamaella lignohabitans SCF E2 ubiquitin-protein ligase catalytic subunit CDC34 XP_018738418.1 4607864 R 796027 CDS AWJ20_3586 30035624 4610284..4611288 B 1 NC_031674.1 Peroxisomal adenine nucleotide transporter; involved in beta-oxidation of medium-chain fatty acid; required for peroxisome proliferation; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0005779 - integral component of peroxisomal membrane [Evidence IDA] [PMID 11566870]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005778 - peroxisomal membrane [Evidence IEA]; GO_component: GO:0005777 - peroxisome [Evidence IEA]; GO_function: GO:0000295 - adenine nucleotide transmembrane transporter activity [Evidence IMP] [PMID 11390660]; GO_function: GO:0000295 - adenine nucleotide transmembrane transporter activity [Evidence IDA] [PMID 11566870]; GO_process: GO:0015867 - ATP transport [Evidence IDA] [PMID 11566870]; GO_process: GO:0006635 - fatty acid beta-oxidation [Evidence IGI,IMP] [PMID 11390660]; GO_process: GO:0006635 - fatty acid beta-oxidation [Evidence IGI,IMP] [PMID 11566870]; GO_process: GO:0006811 - ion transport [Evidence IEA]; GO_process: GO:0007031 - peroxisome organization [Evidence IMP] [PMID 11390660]; GO_process: GO:0015992 - proton transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Ant1p 4611288 ANT1 30035624 ANT1 Sugiyamaella lignohabitans Ant1p XP_018738419.1 4610284 D 796027 CDS AWJ20_3587 30035625 complement(4612463..4613872) B 1 NC_031674.1 transcriptional regulator OPI1 4613872 OPI1 30035625 OPI1 Sugiyamaella lignohabitans transcriptional regulator OPI1 XP_018738420.1 4612463 R 796027 CDS AWJ20_3591 30035630 4618830..4621334 B 1 NC_031674.1 galactose-responsive transcription factor GAL4 4621334 GAL4 30035630 GAL4 Sugiyamaella lignohabitans galactose-responsive transcription factor GAL4 XP_018738421.1 4618830 D 796027 CDS AWJ20_3592 30035631 4622150..4623589 B 1 NC_031674.1 Membrane protein involved in zinc ion homeostasis; member of the four-protein IZH family, expression induced by zinc deficiency; deletion reduces sensitivity to elevated zinc and shortens lag phase, overexpression reduces Zap1p activity; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 14562095]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0001653 - peptide receptor activity [Evidence ISS] [PMID 15060275]; GO_process: GO:0006882 - cellular zinc ion homeostasis [Evidence IMP] [PMID 15060275]; Izh3p 4623589 IZH3 30035631 IZH3 Sugiyamaella lignohabitans Izh3p XP_018738422.1 4622150 D 796027 CDS AWJ20_3593 30035632 4624320..4625432 B 1 NC_031674.1 Inositol polyphosphate multikinase (IPMK); sequentially phosphorylates Ins(1,4,5)P3 to form Ins(1,3,4,5,6)P5; also has diphosphoinositol polyphosphate synthase activity; regulates arginine-, phosphate-, and nitrogen-responsive genes; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 10720331]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 3311884]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0000824 - inositol tetrakisphosphate 3-kinase activity [Evidence IDA] [PMID 10574768]; GO_function: GO:0000824 - inositol tetrakisphosphate 3-kinase activity [Evidence IDA] [PMID 10720331]; GO_function: GO:0000825 - inositol tetrakisphosphate 6-kinase activity [Evidence IDA] [PMID 11311242]; GO_function: GO:0000827 - inositol-1,3,4,5,6-pentakisphosphate kinase activity [Evidence IDA] [PMID 11311242]; GO_function: GO:0008440 - inositol-1,4,5-trisphosphate 3-kinase activity [Evidence IEA]; GO_function: GO:0008440 - inositol-1,4,5-trisphosphate 3-kinase activity [Evidence IMP] [PMID 10683435]; GO_function: GO:0000823 - inositol-1,4,5-trisphosphate 6-kinase activity [Evidence IEA]; GO_function: GO:0000823 - inositol-1,4,5-trisphosphate 6-kinase activity [Evidence IDA] [PMID 10574768]; GO_function: GO:0000823 - inositol-1,4,5-trisphosphate 6-kinase activity [Evidence IDA] [PMID 10720331]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0035004 - phosphatidylinositol 3-kinase activity [Evidence IDA] [PMID 16123124]; GO_function: GO:0030674 - protein binding, bridging [Evidence IMP,IPI] [PMID 10632874]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006525 - arginine metabolic process [Evidence IEA]; GO_process: GO:0032958 - inositol phosphate biosynthetic process [Evidence IDA] [PMID 10574768]; GO_process: GO:0032958 - inositol phosphate biosynthetic process [Evidence IDA] [PMID 11311242]; GO_process: GO:0000122 - negative regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 12828642]; GO_process: GO:0046854 - phosphatidylinositol phosphorylation [Evidence IDA] [PMID 16123124]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 12828642]; GO_process: GO:0050821 - protein stabilization [Evidence IMP] [PMID 10632874]; GO_process: GO:0000821 - regulation of arginine metabolic process [Evidence IMP] [PMID 11119723]; GO_process: GO:0000821 - regulation of arginine metabolic process [Evidence IMP] [PMID 2274024]; GO_process: GO:0000821 - regulation of arginine metabolic process [Evidence IMP] [PMID 8043104]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; inositol polyphosphate multikinase 4625432 ARG82 30035632 ARG82 Sugiyamaella lignohabitans inositol polyphosphate multikinase XP_018738423.1 4624320 D 796027 CDS AWJ20_3594 30035633 4626766..4627401 B 1 NC_031674.1 uncharacterized protein 4627401 30035633 AWJ20_3594 Sugiyamaella lignohabitans uncharacterized protein XP_018738424.1 4626766 D 796027 CDS AWJ20_3595 30035634 4628745..4629530 B 1 NC_031674.1 glucose-inactivated glycerol proton symporter STL1 4629530 STL1 30035634 STL1 Sugiyamaella lignohabitans glucose-inactivated glycerol proton symporter STL1 XP_018738425.1 4628745 D 796027 CDS AWJ20_3596 30035635 4630748..4631221 B 1 NC_031674.1 uncharacterized protein 4631221 30035635 AWJ20_3596 Sugiyamaella lignohabitans uncharacterized protein XP_018738426.1 4630748 D 796027 CDS AWJ20_3597 30035636 complement(4631332..4633173) B 1 NC_031674.1 Glycogenin glucosyltransferase; self-glucosylating initiator of glycogen synthesis, also glucosylates n-dodecyl-beta-D-maltoside; similar to mammalian glycogenin; GLG1 has a paralog, GLG2, that arose from the whole genome duplication; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0008466 - glycogenin glucosyltransferase activity [Evidence IEA]; GO_function: GO:0008466 - glycogenin glucosyltransferase activity [Evidence IGI,ISS] [PMID 8524228]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA]; GO_process: GO:0005978 - glycogen biosynthetic process [Evidence IEA]; GO_process: GO:0005978 - glycogen biosynthetic process [Evidence IGI] [PMID 8524228]; glycogenin glucosyltransferase GLG1 4633173 GLG1 30035636 GLG1 Sugiyamaella lignohabitans glycogenin glucosyltransferase GLG1 XP_018738427.1 4631332 R 796027 CDS AWJ20_3599 30035638 complement(4635271..4637793) B 1 NC_031674.1 formin-binding protein HOF1 4637793 HOF1 30035638 HOF1 Sugiyamaella lignohabitans formin-binding protein HOF1 XP_018738428.1 4635271 R 796027 CDS AWJ20_3600 30035641 4639417..4639629 B 1 NC_031674.1 Ribosomal 60S subunit protein L31B; associates with karyopherin Sxm1p; loss of both Rpl31p and Rpl39p confers lethality; homologous to mammalian ribosomal protein L31, no bacterial homolog; RPL31B has a paralog, RPL31A, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0022625 - cytosolic large ribosomal subunit [Evidence IDA] [PMID 18782943]; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA,IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IDA] [PMID 18782943]; GO_process: GO:0002181 - cytoplasmic translation [Evidence IDA] [PMID 18782943]; GO_process: GO:0006450 - regulation of translational fidelity [Evidence IMP] [PMID 18829863]; GO_process: GO:0006412 - translation [Evidence IEA]; ribosomal 60S subunit protein L31B 4639629 RPL31B 30035641 RPL31B Sugiyamaella lignohabitans ribosomal 60S subunit protein L31B XP_018738429.1 4639417 D 796027 CDS AWJ20_3601 30035642 4642456..4643172 B 1 NC_031674.1 Fructose 1,6-bisphosphate aldolase; required for glycolysis and gluconeogenesis; catalyzes conversion of fructose 1,6 bisphosphate to glyceraldehyde-3-P and dihydroxyacetone-P; locates to mitochondrial outer surface upon oxidative stress; N-terminally propionylated in vivo; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 16806052]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16806052]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16962558]; GO_function: GO:0016832 - aldehyde-lyase activity [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0004332 - fructose-bisphosphate aldolase activity [Evidence IEA,IEA]; GO_function: GO:0004332 - fructose-bisphosphate aldolase activity [Evidence IDA,IMP] [PMID 2647491]; GO_function: GO:0016829 - lyase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0005975 - carbohydrate metabolic process [Evidence IEA]; GO_process: GO:0006094 - gluconeogenesis [Evidence IMP] [PMID 6384192]; GO_process: GO:0006096 - glycolytic process [Evidence IEA,IEA,IEA]; GO_process: GO:0006096 - glycolytic process [Evidence IMP] [PMID 6384192]; fructose-bisphosphate aldolase FBA1 4643172 FBA1 30035642 FBA1 Sugiyamaella lignohabitans fructose-bisphosphate aldolase FBA1 XP_018738430.1 4642456 D 796027 CDS AWJ20_3603 30035644 4649075..4652131 B 1 NC_031674.1 Component of transport protein particle (TRAPP) complex II; TRAPPII is a multimeric guanine nucleotide-exchange factor for the GTPase Ypt1p, regulating intra-Golgi and endosome-Golgi traffic; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA,IEA]; GO_component: GO:1990071 - TRAPPII protein complex [Evidence IDA] [PMID 11239471]; GO_component: GO:0005769 - early endosome [Evidence IDA] [PMID 16314430]; GO_component: GO:0005802 - trans-Golgi network [Evidence IDA] [PMID 16314430]; GO_function: GO:0017112 - Rab guanyl-nucleotide exchange factor activity [Evidence IGI,IMP,IPI] [PMID 17041589]; GO_process: GO:0032258 - CVT pathway [Evidence IMP] [PMID 23078654]; GO_process: GO:0006914 - autophagy [Evidence IEA]; GO_process: GO:0034498 - early endosome to Golgi transport [Evidence IMP] [PMID 16314430]; GO_process: GO:0006891 - intra-Golgi vesicle-mediated transport [Evidence IMP] [PMID 11239471]; GO_process: GO:0006891 - intra-Golgi vesicle-mediated transport [Evidence IMP] [PMID 16314430]; GO_process: GO:0016236 - macroautophagy [Evidence IMP] [PMID 23078654]; GO_process: GO:0032313 - regulation of Rab GTPase activity [Evidence IMP] [PMID 17041589]; GO_process: GO:0006810 - transport [Evidence IEA]; Trs130p 4652131 TRS130 30035644 TRS130 Sugiyamaella lignohabitans Trs130p XP_018738431.1 4649075 D 796027 CDS AWJ20_3604 30035645 4652307..4652888 B 1 NC_031674.1 uncharacterized protein 4652888 30035645 AWJ20_3604 Sugiyamaella lignohabitans uncharacterized protein XP_018738432.1 4652307 D 796027 CDS AWJ20_3605 30035646 complement(4652931..4653728) B 1 NC_031674.1 Uroporphyrinogen III synthase; catalyzes the conversion of hydroxymethylbilane to uroporphyrinogen III, the fourth step in heme biosynthesis; deficiency in the human homolog can result in the disease congenital erythropoietic porphyria; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0016829 - lyase activity [Evidence IEA]; GO_function: GO:0004852 - uroporphyrinogen-III synthase activity [Evidence IEA,IEA]; GO_function: GO:0004852 - uroporphyrinogen-III synthase activity [Evidence IMP,ISS] [PMID 7597845]; GO_process: GO:0006783 - heme biosynthetic process [Evidence IEA]; GO_process: GO:0006783 - heme biosynthetic process [Evidence IMP] [PMID 14559249]; GO_process: GO:0006783 - heme biosynthetic process [Evidence IMP] [PMID 18042043]; GO_process: GO:0006779 - porphyrin-containing compound biosynthetic process [Evidence IEA]; GO_process: GO:0006782 - protoporphyrinogen IX biosynthetic process [Evidence IEA]; GO_process: GO:0033014 - tetrapyrrole biosynthetic process [Evidence IEA]; uroporphyrinogen-III synthase HEM4 4653728 HEM4 30035646 HEM4 Sugiyamaella lignohabitans uroporphyrinogen-III synthase HEM4 XP_018738433.1 4652931 R 796027 CDS AWJ20_3606 30035647 4654304..4655929 B 1 NC_031674.1 Ribosomal lysine methyltransferase; specific for monomethylation of Rpl42ap and Rpl42bp (lysine 40); nuclear SET domain containing protein; relocalizes to the cytosol in response to hypoxia; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 22932476]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22932476]; GO_function: GO:0008168 - methyltransferase activity [Evidence IEA]; GO_function: GO:0016279 - protein-lysine N-methyltransferase activity [Evidence IGI,IMP] [PMID 18957409]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0032259 - methylation [Evidence IEA]; GO_process: GO:0018026 - peptidyl-lysine monomethylation [Evidence IGI,IMP] [PMID 18957409]; Rkm3p 4655929 RKM3 30035647 RKM3 Sugiyamaella lignohabitans Rkm3p XP_018738434.1 4654304 D 796027 CDS AWJ20_3607 30035648 complement(4655993..4658302) B 1 NC_031674.1 cyclin-dependent serine/threonine protein kinase CTK1 4658302 CTK1 30035648 CTK1 Sugiyamaella lignohabitans cyclin-dependent serine/threonine protein kinase CTK1 XP_018738435.1 4655993 R 796027 CDS AWJ20_3608 30035649 4659484..4659765 B 1 NC_031674.1 Glutathione-dependent oxidoreductase; hydroperoxide and superoxide-radical responsive; mitochondrial matrix protein involved in the synthesis/assembly of iron-sulfur centers; monothiol glutaredoxin subfamily member along with Grx3p and Grx4p; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA]; GO_component: GO:0005759 - mitochondrial matrix [Evidence IDA] [PMID 15456753]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0051537 - 2 iron, 2 sulfur cluster binding [Evidence IEA]; GO_function: GO:0015036 - disulfide oxidoreductase activity [Evidence IGI,IMP,ISS] [PMID 10567543]; GO_function: GO:0015036 - disulfide oxidoreductase activity [Evidence IDA] [PMID 12730244]; GO_function: GO:0009055 - electron carrier activity [Evidence IEA]; GO_function: GO:0051536 - iron-sulfur cluster binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0015035 - protein disulfide oxidoreductase activity [Evidence IEA]; GO_process: GO:0045454 - cell redox homeostasis [Evidence IEA]; GO_process: GO:0034599 - cellular response to oxidative stress [Evidence IGI,IMP] [PMID 10567543]; GO_process: GO:0016226 - iron-sulfur cluster assembly [Evidence TAS] [PMID 15382238]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; GO_process: GO:0006970 - response to osmotic stress [Evidence IMP] [PMID 10567543]; monothiol glutaredoxin GRX5 4659765 GRX5 30035649 GRX5 Sugiyamaella lignohabitans monothiol glutaredoxin GRX5 XP_018738436.1 4659484 D 796027 CDS AWJ20_3609 30035650 complement(4659839..4661086) B 1 NC_031674.1 tRNA-specific adenosine deaminase; deaminates adenosine-37 to inosine in tRNA-Ala; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11914276]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0004000 - adenosine deaminase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0043829 - tRNA-specific adenosine-37 deaminase activity [Evidence IDA] [PMID 9707437]; GO_process: GO:0006396 - RNA processing [Evidence IEA]; GO_process: GO:0006400 - tRNA modification [Evidence IDA] [PMID 9707437]; GO_process: GO:0008033 - tRNA processing [Evidence IEA]; Tad1p 4661086 TAD1 30035650 TAD1 Sugiyamaella lignohabitans Tad1p XP_018738437.1 4659839 R 796027 CDS AWJ20_3610 30035652 4667586..4669049 B 1 NC_031674.1 Probable mitochondrial seryl-tRNA synthetase; mutant displays increased invasive and pseudohyphal growth; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IGI,IMP] [PMID 11747308]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004812 - aminoacyl-tRNA ligase activity [Evidence IEA,IEA]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_function: GO:0004828 - serine-tRNA ligase activity [Evidence IEA,IEA]; GO_function: GO:0004828 - serine-tRNA ligase activity [Evidence ISA] [PMID 11063681]; GO_function: GO:0004828 - serine-tRNA ligase activity [Evidence IGI] [PMID 11747308]; GO_process: GO:0001403 - invasive growth in response to glucose limitation [Evidence IGI] [PMID 11063681]; GO_process: GO:0070158 - mitochondrial seryl-tRNA aminoacylation [Evidence IGI] [PMID 11747308]; GO_process: GO:0007124 - pseudohyphal growth [Evidence IMP] [PMID 11063681]; GO_process: GO:0097056 - selenocysteinyl-tRNA(Sec) biosynthetic process [Evidence IEA]; GO_process: GO:0006434 - seryl-tRNA aminoacylation [Evidence IEA]; GO_process: GO:0006418 - tRNA aminoacylation for protein translation [Evidence IEA]; GO_process: GO:0006412 - translation [Evidence IEA]; putative serine--tRNA ligase DIA4 4669049 DIA4 30035652 DIA4 Sugiyamaella lignohabitans putative serine--tRNA ligase DIA4 XP_018738438.1 4667586 D 796027 CDS AWJ20_3611 30035653 join(4669788..4669835,4669938..4676402) B 1 NC_031674.1 E3 ubiquitin ligase of the hect-domain class; has a role in mRNA export from the nucleus and may regulate transcriptional coactivators; involved in degradation of excess histones; interacts with Dia2p and is required for Dia2p degradation; required to target Cdc6p for ubiquitin-mediated destruction during G1 phase; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence IEA]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence IDA] [PMID 19578373]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0000448 - cleavage in ITS2 between 5.8S rRNA and LSU-rRNA of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 11238398]; GO_process: GO:0000480 - endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 11238398]; GO_process: GO:0000447 - endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 11238398]; GO_process: GO:0000472 - endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 11238398]; GO_process: GO:0051028 - mRNA transport [Evidence IEA]; GO_process: GO:0007067 - mitotic nuclear division [Evidence IMP] [PMID 10395901]; GO_process: GO:0006913 - nucleocytoplasmic transport [Evidence IMP] [PMID 10395901]; GO_process: GO:0006997 - nucleus organization [Evidence IMP] [PMID 10395901]; GO_process: GO:0016567 - protein ubiquitination [Evidence IEA]; GO_process: GO:0016567 - protein ubiquitination [Evidence IDA] [PMID 19578373]; GO_process: GO:0042787 - protein ubiquitination involved in ubiquitin-dependent protein catabolic process [Evidence IBA]; GO_process: GO:0042787 - protein ubiquitination involved in ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 23129771]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0008361 - regulation of cell size [Evidence IMP] [PMID 12089449]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; E3 ubiquitin-protein ligase TOM1 4676402 TOM1 30035653 TOM1 Sugiyamaella lignohabitans E3 ubiquitin-protein ligase TOM1 XP_018738439.1 4669788 D 796027 CDS AWJ20_3612 30035654 join(4676486..4676831,4676895..4680991) B 1 NC_031674.1 E3 ubiquitin ligase of the hect-domain class; has a role in mRNA export from the nucleus and may regulate transcriptional coactivators; involved in degradation of excess histones; interacts with Dia2p and is required for Dia2p degradation; required to target Cdc6p for ubiquitin-mediated destruction during G1 phase; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence IEA]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence IDA] [PMID 19578373]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0000448 - cleavage in ITS2 between 5.8S rRNA and LSU-rRNA of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 11238398]; GO_process: GO:0000480 - endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 11238398]; GO_process: GO:0000447 - endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 11238398]; GO_process: GO:0000472 - endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 11238398]; GO_process: GO:0051028 - mRNA transport [Evidence IEA]; GO_process: GO:0007067 - mitotic nuclear division [Evidence IMP] [PMID 10395901]; GO_process: GO:0006913 - nucleocytoplasmic transport [Evidence IMP] [PMID 10395901]; GO_process: GO:0006997 - nucleus organization [Evidence IMP] [PMID 10395901]; GO_process: GO:0016567 - protein ubiquitination [Evidence IEA]; GO_process: GO:0016567 - protein ubiquitination [Evidence IDA] [PMID 19578373]; GO_process: GO:0042787 - protein ubiquitination involved in ubiquitin-dependent protein catabolic process [Evidence IBA]; GO_process: GO:0042787 - protein ubiquitination involved in ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 23129771]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0008361 - regulation of cell size [Evidence IMP] [PMID 12089449]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; E3 ubiquitin-protein ligase TOM1 4680991 TOM1 30035654 TOM1 Sugiyamaella lignohabitans E3 ubiquitin-protein ligase TOM1 XP_018738440.1 4676486 D 796027 CDS AWJ20_3613 30035655 4681293..4682201 B 1 NC_031674.1 uncharacterized protein 4682201 30035655 AWJ20_3613 Sugiyamaella lignohabitans uncharacterized protein XP_018738441.1 4681293 D 796027 CDS AWJ20_3614 30035656 4684850..4692553 B 1 NC_031674.1 Ras GTPase activating protein IRA2 4692553 IRA2 30035656 IRA2 Sugiyamaella lignohabitans Ras GTPase activating protein IRA2 XP_018738442.1 4684850 D 796027 CDS AWJ20_3615 30035657 complement(4692751..4693620) B 1 NC_031674.1 Putative RNA exonuclease; possibly involved in pre-rRNA processing and ribosome assembly; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0008408 - 3'-5' exonuclease activity [Evidence ISS] [PMID 9396823]; GO_function: GO:0004527 - exonuclease activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0004518 - nuclease activity [Evidence IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_process: GO:0090305 - nucleic acid phosphodiester bond hydrolysis [Evidence IEA,IEA]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0006364 - rRNA processing [Evidence IGI] [PMID 12364601]; GO_process: GO:0000027 - ribosomal large subunit assembly [Evidence IGI] [PMID 12364601]; Rex4p 4693620 REX4 30035657 REX4 Sugiyamaella lignohabitans Rex4p XP_018738443.1 4692751 R 796027 CDS AWJ20_3616 30035658 4693903..4695648 B 1 NC_031674.1 Splicing factor; component of the U4/U6-U5 snRNP complex; GO_component: GO:0046540 - U4/U6 x U5 tri-snRNP complex [Evidence IEA]; GO_component: GO:0046540 - U4/U6 x U5 tri-snRNP complex [Evidence IDA] [PMID 10377396]; GO_component: GO:0046540 - U4/U6 x U5 tri-snRNP complex [Evidence IDA] [PMID 10449419]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005681 - spliceosomal complex [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008380 - RNA splicing [Evidence IEA]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0000398 - mRNA splicing, via spliceosome [Evidence IEA]; GO_process: GO:0000398 - mRNA splicing, via spliceosome [Evidence IPI] [PMID 10377396]; Prp3p 4695648 PRP3 30035658 PRP3 Sugiyamaella lignohabitans Prp3p XP_018738444.1 4693903 D 796027 CDS AWJ20_3617 30035659 complement(4695831..4696427) B 1 NC_031674.1 Subunit of TFIID, TFIIF, INO80, SWI/SNF, and NuA3 complexes; involved in RNA polymerase II transcription initiation and in chromatin modification; contains a YEATS domain; GO_component: GO:0031011 - Ino80 complex [Evidence IDA] [PMID 12887900]; GO_component: GO:0031011 - Ino80 complex [Evidence IPI] [PMID 24034245]; GO_component: GO:0033100 - NuA3 histone acetyltransferase complex [Evidence IDA] [PMID 10817755]; GO_component: GO:0033100 - NuA3 histone acetyltransferase complex [Evidence IDA] [PMID 17157260]; GO_component: GO:0016514 - SWI/SNF complex [Evidence IDA] [PMID 18644858]; GO_component: GO:0016514 - SWI/SNF complex [Evidence IPI] [PMID 8668146]; GO_component: GO:0016592 - mediator complex [Evidence IPI] [PMID 7995524]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22932476]; GO_component: GO:0005669 - transcription factor TFIID complex [Evidence IDA] [PMID 10788514]; GO_component: GO:0005669 - transcription factor TFIID complex [Evidence IDA] [PMID 15448131]; GO_component: GO:0005674 - transcription factor TFIIF complex [Evidence IDA] [PMID 12242279]; GO_component: GO:0005674 - transcription factor TFIIF complex [Evidence IDA,IPI] [PMID 15896708]; GO_component: GO:0005674 - transcription factor TFIIF complex [Evidence IDA] [PMID 7995524]; GO_function: GO:0015616 - DNA translocase activity [Evidence IDA] [PMID 16455496]; GO_function: GO:0015616 - DNA translocase activity [Evidence IDA] [PMID 17188033]; GO_function: GO:0015616 - DNA translocase activity [Evidence IDA] [PMID 17918861]; GO_function: GO:0001075 - RNA polymerase II core promoter sequence-specific DNA binding transcription factor activity involved in preinitiation complex assembly [Evidence IC] [PMID 15448131]; GO_function: GO:0000991 - core RNA polymerase II binding transcription factor activity [Evidence IDA] [PMID 14749386]; GO_function: GO:0001139 - core RNA polymerase II recruiting transcription factor activity [Evidence IC] [PMID 7995524]; GO_process: GO:0051123 - RNA polymerase II transcriptional preinitiation complex assembly [Evidence IC] [PMID 10788514]; GO_process: GO:0051123 - RNA polymerase II transcriptional preinitiation complex assembly [Evidence IC] [PMID 7995524]; GO_process: GO:0006338 - chromatin remodeling [Evidence IC] [PMID 12887900]; GO_process: GO:0006338 - chromatin remodeling [Evidence IC] [PMID 15896708]; GO_process: GO:0006338 - chromatin remodeling [Evidence IC] [PMID 8668146]; GO_process: GO:0016573 - histone acetylation [Evidence IDA] [PMID 10817755]; GO_process: GO:0042766 - nucleosome mobilization [Evidence IDA] [PMID 12887900]; GO_process: GO:0001111 - promoter clearance from RNA polymerase II promoter [Evidence IC] [PMID 7995524]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA,IEA]; GO_process: GO:0006368 - transcription elongation from RNA polymerase II promoter [Evidence IC] [PMID 7995524]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IDA] [PMID 12138208]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IDA] [PMID 15448131]; GO_process: GO:0006367 - transcription initiation from RNA polymerase II promoter [Evidence IDA] [PMID 1331084]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; GO_process: GO:0001174 - transcriptional start site selection at RNA polymerase II promoter [Evidence IC] [PMID 7995524]; TATA-binding protein-associated factor TAF14 4696427 TAF14 30035659 TAF14 Sugiyamaella lignohabitans TATA-binding protein-associated factor TAF14 XP_018738445.1 4695831 R 796027 CDS AWJ20_3618 30035660 complement(4698677..4699228) B 1 NC_031674.1 Essential cytoplasmic iron-sulfur cluster binding protein; forms a complex with Cfd1p that is involved in iron-sulfur protein assembly in the cytosol; similar to P-loop NTPases; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 15728363]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 15728363]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 15728363]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 8921898]; GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA,IEA,IEA]; GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IDA] [PMID 17401378]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016887 - ATPase activity [Evidence IMP,ISS] [PMID 8921898]; GO_function: GO:0005506 - iron ion binding [Evidence IMP,IPI] [PMID 15728363]; GO_function: GO:0051536 - iron-sulfur cluster binding [Evidence IEA,IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0016226 - iron-sulfur cluster assembly [Evidence IEA,IEA]; GO_process: GO:0016226 - iron-sulfur cluster assembly [Evidence IMP] [PMID 15728363]; GO_process: GO:0016226 - iron-sulfur cluster assembly [Evidence IDA] [PMID 17401378]; GO_process: GO:0002098 - tRNA wobble uridine modification [Evidence IMP] [PMID 18755837]; Nbp35p 4699228 NBP35 30035660 NBP35 Sugiyamaella lignohabitans Nbp35p XP_018738446.1 4698677 R 796027 CDS AWJ20_3619 30035661 complement(4699605..4700243) B 1 NC_031674.1 hypothetical protein; the authentic protein is detected in highly purified mitochondria in high-throughput studies; null mutant displays reduced frequency of mitochondrial genome loss; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0016884 - carbon-nitrogen ligase activity, with glutamine as amido-N-donor [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; Aim41p 4700243 AIM41 30035661 AIM41 Sugiyamaella lignohabitans Aim41p XP_018738447.1 4699605 R 796027 CDS AWJ20_3620 30035663 4700334..4702049 B 1 NC_031674.1 Mitochondrial protein; forms a heterodimer complex with Mto1p that performs the 5-carboxymethylaminomethyl modification of the wobble uridine base in mitochondrial tRNAs; similar to human GTPBP3; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IDA] [PMID 11604502]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0005525 - GTP binding [Evidence IEA,IEA]; GO_function: GO:0005525 - GTP binding [Evidence ISS] [PMID 8392589]; GO_function: GO:0003924 - GTPase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006184 - GTP catabolic process [Evidence IEA]; GO_process: GO:0070899 - mitochondrial tRNA wobble uridine modification [Evidence IMP] [PMID 15509579]; GO_process: GO:0007264 - small GTPase mediated signal transduction [Evidence IEA]; GO_process: GO:0006400 - tRNA modification [Evidence IEA]; GO_process: GO:0008033 - tRNA processing [Evidence IEA]; Mss1p 4702049 MSS1 30035663 MSS1 Sugiyamaella lignohabitans Mss1p XP_018738448.1 4700334 D 796027 CDS AWJ20_3621 30035664 complement(4702318..4702809) B 1 NC_031674.1 uncharacterized protein 4702809 30035664 AWJ20_3621 Sugiyamaella lignohabitans uncharacterized protein XP_018738449.1 4702318 R 796027 CDS AWJ20_3622 30035665 complement(4705174..4708062) B 1 NC_031674.1 uncharacterized protein 4708062 30035665 AWJ20_3622 Sugiyamaella lignohabitans uncharacterized protein XP_018738450.1 4705174 R 796027 CDS AWJ20_3623 30035666 complement(4708409..4709716) B 1 NC_031674.1 uncharacterized protein 4709716 30035666 AWJ20_3623 Sugiyamaella lignohabitans uncharacterized protein XP_018738451.1 4708409 R 796027 CDS AWJ20_3624 30035667 4710592..4711101 B 1 NC_031674.1 top hit is XP_007298107.1 originated in Stereum hirsutum FP-91666 SS1; nuclear movement protein nudC 4711101 30035667 AWJ20_3624 Sugiyamaella lignohabitans nuclear movement protein nudC XP_018738452.1 4710592 D 796027 CDS AWJ20_3625 30035668 4711936..4715598 B 1 NC_031674.1 Subunit of RAVE complex (Rav1p, Rav2p, Skp1p); the RAVE complex promotes assembly of the V-ATPase holoenzyme; required for transport between the early and late endosome/PVC and for localization of TGN membrane proteins; potential Cdc28p substrate; GO_component: GO:0043291 - RAVE complex [Evidence IPI] [PMID 11283612]; GO_component: GO:0043291 - RAVE complex [Evidence IPI] [PMID 11844802]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11283612]; GO_component: GO:0012505 - endomembrane system [Evidence IEA]; GO_component: GO:0019898 - extrinsic component of membrane [Evidence IDA] [PMID 15090613]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0045022 - early endosome to late endosome transport [Evidence IGI,IMP] [PMID 15090613]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0043254 - regulation of protein complex assembly [Evidence IMP,IPI] [PMID 11283612]; GO_process: GO:0043254 - regulation of protein complex assembly [Evidence IGI,IMP] [PMID 11844802]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0007035 - vacuolar acidification [Evidence IGI,IMP] [PMID 11283612]; GO_process: GO:0007035 - vacuolar acidification [Evidence IGI,IMP] [PMID 11844802]; Rav1p 4715598 RAV1 30035668 RAV1 Sugiyamaella lignohabitans Rav1p XP_018738453.1 4711936 D 796027 CDS AWJ20_3626 30035669 complement(4715673..4718369) B 1 NC_031674.1 uncharacterized protein 4718369 30035669 AWJ20_3626 Sugiyamaella lignohabitans uncharacterized protein XP_018738454.1 4715673 R 796027 CDS AWJ20_3627 30035670 complement(4719860..4721458) B 1 NC_031674.1 Vacuolar proteinase B (yscB) with H3 N-terminal endopeptidase activity; serine protease of the subtilisin family; involved in protein degradation in the vacuole and required for full protein degradation during sporulation; activity inhibited by Pbi2p; protein abundance increases in response to DNA replication stress; PRB1 has a paralog, YSP3, that arose from the whole genome duplication; GO_component: GO:0005619 - ascospore wall [Evidence IBA]; GO_component: GO:0000324 - fungal-type vacuole [Evidence TAS] [PMID 2674123]; GO_component: GO:0000328 - fungal-type vacuole lumen [Evidence TAS] [PMID 9529893]; GO_component: GO:0005773 - vacuole [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0042802 - identical protein binding [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_function: GO:0004252 - serine-type endopeptidase activity [Evidence IEA]; GO_function: GO:0004252 - serine-type endopeptidase activity [Evidence ISA] [PMID 3325823]; GO_function: GO:0004252 - serine-type endopeptidase activity [Evidence IMP] [PMID 377296]; GO_function: GO:0004252 - serine-type endopeptidase activity [Evidence IMP] [PMID 385314]; GO_function: GO:0008236 - serine-type peptidase activity [Evidence IEA]; GO_process: GO:0009267 - cellular response to starvation [Evidence IMP] [PMID 2674123]; GO_process: GO:0043086 - negative regulation of catalytic activity [Evidence IEA]; GO_process: GO:0006508 - proteolysis [Evidence IBA,IEA,IEA]; GO_process: GO:0030435 - sporulation resulting in formation of a cellular spore [Evidence IMP] [PMID 2674123]; GO_process: GO:0007039 - vacuolar protein catabolic process [Evidence IMP] [PMID 2674123]; GO_process: GO:0007039 - vacuolar protein catabolic process [Evidence IMP] [PMID 385314]; proteinase B 4721458 PRB1 30035670 PRB1 Sugiyamaella lignohabitans proteinase B XP_018738455.1 4719860 R 796027 CDS AWJ20_3628 30035671 complement(4727356..4729026) B 1 NC_031674.1 Member of the ChAPs family (Chs5p-Arf1p-binding proteins); members include Bch1p, Bch2p, Bud7p, and Chs6p; ChAPs family proteins form the exomer complex with Chs5p to mediate export of specific cargo proteins, including Chs3p, from the Golgi to the plasma membrane; BUD7 has a paralog, BCH1, that arose from the whole genome duplication; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA,IEA]; GO_component: GO:0030136 - clathrin-coated vesicle [Evidence IDA] [PMID 14562095]; GO_component: GO:0034044 - exomer complex [Evidence IDA] [PMID 17000877]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0030140 - trans-Golgi network transport vesicle [Evidence IDA] [PMID 16498409]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006893 - Golgi to plasma membrane transport [Evidence IGI] [PMID 16498409]; GO_process: GO:0000282 - cellular bud site selection [Evidence IMP] [PMID 8657162]; GO_process: GO:0034221 - fungal-type cell wall chitin biosynthetic process [Evidence IGI,IPI] [PMID 16498409]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Bud7p 4729026 BUD7 30035671 BUD7 Sugiyamaella lignohabitans Bud7p XP_018738456.1 4727356 R 796027 CDS AWJ20_3629 30035672 complement(4730034..4731821) B 1 NC_031674.1 Alpha-1,6-mannosyltransferase localized to the ER; responsible for the addition of the alpha-1,6 mannose to dolichol-linked Man7GlcNAc2, acts in the dolichol pathway for N-glycosylation; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 14562095]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0000009 - alpha-1,6-mannosyltransferase activity [Evidence IMP] [PMID 10336995]; GO_function: GO:0052917 - dol-P-Man:Man(7)GlcNAc(2)-PP-Dol alpha-1,6-mannosyltransferase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA,IEA]; GO_process: GO:0006488 - dolichol-linked oligosaccharide biosynthetic process [Evidence IMP] [PMID 10336995]; GO_process: GO:0097502 - mannosylation [Evidence IEA]; GO_process: GO:0006486 - protein glycosylation [Evidence IEA]; GO_process: GO:0006486 - protein glycosylation [Evidence IMP] [PMID 10336995]; GO_process: GO:0006486 - protein glycosylation [Evidence IMP] [PMID 12460938]; dolichyl-P-Man:Man(7)GlcNAc(2)-PP-dolichol alpha-1,6-mannosyltransferase 4731821 ALG12 30035672 ALG12 Sugiyamaella lignohabitans dolichyl-P-Man:Man(7)GlcNAc(2)-PP-dolichol alpha-1,6-mannosyltransferase XP_018738457.1 4730034 R 796027 CDS AWJ20_3630 30035674 complement(4733809..4734453) B 1 NC_031674.1 Peptidyl-prolyl cis-trans isomerase (cyclophilin) of the ER; catalyzes the cis-trans isomerization of peptide bonds N-terminal to proline residues; transcriptionally induced in response to unfolded proteins in the ER; CPR5 has a paralog, CPR2, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 11914276]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 8377189]; GO_component: GO:0005788 - endoplasmic reticulum lumen [Evidence IEA]; GO_function: GO:0016853 - isomerase activity [Evidence IEA]; GO_function: GO:0042277 - peptide binding [Evidence IEA]; GO_function: GO:0003755 - peptidyl-prolyl cis-trans isomerase activity [Evidence IEA,IEA,IEA]; GO_function: GO:0003755 - peptidyl-prolyl cis-trans isomerase activity [Evidence ISS] [PMID 8377189]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0006457 - protein folding [Evidence IEA,IEA]; GO_process: GO:0000413 - protein peptidyl-prolyl isomerization [Evidence IEA,IEA,IEA]; peptidylprolyl isomerase family protein CPR5 4734453 CPR5 30035674 CPR5 Sugiyamaella lignohabitans peptidylprolyl isomerase family protein CPR5 XP_018738458.1 4733809 R 796027 CDS AWJ20_3631 30035675 4734829..4735374 B 1 NC_031674.1 Subunit (17 kDa) of TFIID and SAGA complexes; involved in RNA polymerase II transcription initiation and in chromatin modification, similar to histone H3; GO_component: GO:0000124 - SAGA complex [Evidence IDA] [PMID 9674426]; GO_component: GO:0046695 - SLIK (SAGA-like) complex [Evidence IDA] [PMID 12446794]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005669 - transcription factor TFIID complex [Evidence IDA] [PMID 10788514]; GO_component: GO:0005669 - transcription factor TFIID complex [Evidence IDA] [PMID 15448131]; GO_function: GO:0001075 - RNA polymerase II core promoter sequence-specific DNA binding transcription factor activity involved in preinitiation complex assembly [Evidence IC]; GO_function: GO:0003682 - chromatin binding [Evidence IDA] [PMID 10818000]; GO_function: GO:0032947 - protein complex scaffold [Evidence IMP] [PMID 9844639]; GO_function: GO:0046982 - protein heterodimerization activity [Evidence IEA]; GO_process: GO:0006352 - DNA-templated transcription, initiation [Evidence IEA]; GO_process: GO:0051123 - RNA polymerase II transcriptional preinitiation complex assembly [Evidence IMP] [PMID 12840001]; GO_process: GO:0016568 - chromatin modification [Evidence IDA] [PMID 9674426]; GO_process: GO:0016573 - histone acetylation [Evidence IDA] [PMID 9674426]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IMP] [PMID 10747053]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IDA] [PMID 12138208]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IDA] [PMID 15448131]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; TATA-binding protein-associated factor TAF9 4735374 TAF9 30035675 TAF9 Sugiyamaella lignohabitans TATA-binding protein-associated factor TAF9 XP_018738459.1 4734829 D 796027 CDS AWJ20_3632 30035676 complement(4735595..4736779) B 1 NC_031674.1 uncharacterized protein 4736779 30035676 AWJ20_3632 Sugiyamaella lignohabitans uncharacterized protein XP_018738460.1 4735595 R 796027 CDS AWJ20_3633 30035677 4742009..4742827 B 1 NC_031674.1 Integral membrane protein required for V-ATPase function; not an actual component of the vacuolar H+-ATPase (V-ATPase) complex; functions in the assembly of the V-ATPase; localized to the endoplasmic reticulum (ER); involved in methionine restriction extension of chronological lifespan in an autophagy-dependent manner; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IDA] [PMID 9325326]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0007035 - vacuolar acidification [Evidence IMP] [PMID 1628805]; GO_process: GO:0070072 - vacuolar proton-transporting V-type ATPase complex assembly [Evidence IMP] [PMID 9325326]; Vph2p 4742827 VPH2 30035677 VPH2 Sugiyamaella lignohabitans Vph2p XP_018738461.1 4742009 D 796027 CDS AWJ20_3634 30035678 4744341..4745675 B 1 NC_031674.1 Vacuolar carboxypeptidase Y (proteinase C, CPY); broad-specificity C-terminal exopeptidase involved in non-specific protein degradation in the vacuole; member of the serine carboxypeptidase family; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 11914276]; GO_component: GO:0000324 - fungal-type vacuole [Evidence IDA] [PMID 14562095]; GO_component: GO:0000324 - fungal-type vacuole [Evidence IDA] [PMID 23708375]; GO_component: GO:0005773 - vacuole [Evidence IEA,IEA,IEA]; GO_function: GO:0004180 - carboxypeptidase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_function: GO:0004185 - serine-type carboxypeptidase activity [Evidence IEA]; GO_function: GO:0004185 - serine-type carboxypeptidase activity [Evidence IDA,IMP] [PMID 8679540]; GO_process: GO:0046938 - phytochelatin biosynthetic process [Evidence IDA,IMP] [PMID 17408619]; GO_process: GO:0006508 - proteolysis [Evidence IEA,IEA]; GO_process: GO:0007039 - vacuolar protein catabolic process [Evidence TAS] [PMID 8789256]; carboxypeptidase C PRC1 4745675 PRC1 30035678 PRC1 Sugiyamaella lignohabitans carboxypeptidase C PRC1 XP_018738462.1 4744341 D 796027 CDS AWJ20_3635 30035679 4746515..4747651 B 1 NC_031674.1 uncharacterized protein 4747651 30035679 AWJ20_3635 Sugiyamaella lignohabitans uncharacterized protein XP_018738463.1 4746515 D 796027 CDS AWJ20_3636 30035680 4748265..4750790 B 1 NC_031674.1 uncharacterized protein 4750790 30035680 AWJ20_3636 Sugiyamaella lignohabitans uncharacterized protein XP_018738464.1 4748265 D 796027 CDS AWJ20_3637 30035681 join(4751154..4751157,4751631..4752265) B 1 NC_031674.1 Ribosomal 60S subunit protein L13A; not essential for viability; homologous to mammalian ribosomal protein L13, no bacterial homolog; RPL13A has a paralog, RPL13B, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0022625 - cytosolic large ribosomal subunit [Evidence IDA] [PMID 11983894]; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA,IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IC] [PMID 11983894]; GO_process: GO:0002181 - cytoplasmic translation [Evidence IC] [PMID 11983894]; GO_process: GO:0006412 - translation [Evidence IEA]; ribosomal 60S subunit protein L13A 4752265 RPL13A 30035681 RPL13A Sugiyamaella lignohabitans ribosomal 60S subunit protein L13A XP_018738465.1 4751154 D 796027 CDS AWJ20_3638 30035682 complement(4752502..4753650) B 1 NC_031674.1 Sphingoid long-chain base kinase; responsible for synthesis of long-chain base phosphates, which function as signaling molecules, regulates synthesis of ceramide from exogenous long-chain bases, localizes to the Golgi and late endosomes; LCB4 has a paralog, LCB5, that arose from the whole genome duplication; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0005794 - Golgi apparatus [Evidence IDA] [PMID 12459470]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA]; GO_component: GO:0032541 - cortical endoplasmic reticulum [Evidence IDA] [PMID 17686782]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 12493772]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 16141212]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0005768 - endosome [Evidence IEA]; GO_component: GO:0031902 - late endosome membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 16141212]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0017050 - D-erythro-sphingosine kinase activity [Evidence IDA] [PMID 9677363]; GO_function: GO:0003951 - NAD+ kinase activity [Evidence IEA]; GO_function: GO:0004143 - diacylglycerol kinase activity [Evidence IEA]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0008481 - sphinganine kinase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0019722 - calcium-mediated signaling [Evidence IMP] [PMID 11278643]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0046834 - lipid phosphorylation [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; GO_process: GO:0007205 - protein kinase C-activating G-protein coupled receptor signaling pathway [Evidence IEA]; GO_process: GO:0006665 - sphingolipid metabolic process [Evidence IEA]; GO_process: GO:0006665 - sphingolipid metabolic process [Evidence IDA] [PMID 9677363]; sphinganine kinase LCB4 4753650 LCB4 30035682 LCB4 Sugiyamaella lignohabitans sphinganine kinase LCB4 XP_018738466.1 4752502 R 796027 CDS AWJ20_3640 30035685 4758502..4759458 B 1 NC_031674.1 Mitogen-activated protein kinase involved in osmoregulation; controls global reallocation of RNAPII in osmotic shock; activates CDC28 by stimulating antisense RNA transcription; mediates recruitment/activation of RNAPII at Hot1p-dependent promoters; with Mrc1p defines novel S-phase checkpoint that prevent conflicts between DNA replication and transcription; nuclear form represses pseudohyphal growth; autophosphorylates; protein abundance increases under DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 10817757]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 10817757]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004707 - MAP kinase activity [Evidence IEA,IEA]; GO_function: GO:0004707 - MAP kinase activity [Evidence IDA] [PMID 10805732]; GO_function: GO:0004707 - MAP kinase activity [Evidence ISS] [PMID 7681220]; GO_function: GO:0003682 - chromatin binding [Evidence IDA] [PMID 24508389]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0004672 - protein kinase activity [Evidence IEA]; GO_function: GO:0004674 - protein serine/threonine kinase activity [Evidence IEA,IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016772 - transferase activity, transferring phosphorus-containing groups [Evidence IEA]; GO_process: GO:0000165 - MAPK cascade [Evidence IEA,IEA]; GO_process: GO:0034605 - cellular response to heat [Evidence IMP] [PMID 12455951]; GO_process: GO:0071470 - cellular response to osmotic stress [Evidence IMP] [PMID 23158682]; GO_process: GO:0006972 - hyperosmotic response [Evidence IMP] [PMID 7681220]; GO_process: GO:0007231 - osmosensory signaling pathway [Evidence IMP] [PMID 7681220]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IDA] [PMID 12743037]; GO_process: GO:0061393 - positive regulation of transcription from RNA polymerase II promoter in response to osmotic stress [Evidence IMP] [PMID 24508389]; GO_process: GO:0006468 - protein phosphorylation [Evidence IEA]; GO_process: GO:0006468 - protein phosphorylation [Evidence IDA] [PMID 10805732]; GO_process: GO:0033262 - regulation of nuclear cell cycle DNA replication [Evidence IDA] [PMID 23178807]; GO_process: GO:0061392 - regulation of transcription from RNA polymerase II promoter in response to osmotic stress [Evidence IDA] [PMID 23178807]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0046685 - response to arsenic-containing substance [Evidence IGI,IMP] [PMID 16885417]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; mitogen-activated protein kinase HOG1 4759458 HOG1 30035685 HOG1 Sugiyamaella lignohabitans mitogen-activated protein kinase HOG1 XP_018738467.1 4758502 D 796027 CDS AWJ20_3641 30035686 complement(4759687..4764387) B 1 NC_031674.1 Vacuolar glutathione S-conjugate transporter; member of ATP-binding cassette family; ATPase activity required to support vacuole fusion; forms stable complexes with vacuole fusion machinery; regulates Vam7p recruitment to vacuoles; has role in detoxifying metals such as cadmium, mercury, and arsenite; also transports unconjugated bilirubin, selenodigluthatione, and oxidized glutathione; similar to human cystic fibrosis protein CFTR; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 23658021]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 8692889]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016887 - ATPase activity [Evidence IEA]; GO_function: GO:0042626 - ATPase activity, coupled to transmembrane movement of substances [Evidence IEA]; GO_function: GO:0015127 - bilirubin transmembrane transporter activity [Evidence IGI,IMP] [PMID 10790694]; GO_function: GO:0015431 - glutathione S-conjugate-exporting ATPase activity [Evidence IDA] [PMID 10220408]; GO_function: GO:0015431 - glutathione S-conjugate-exporting ATPase activity [Evidence IDA] [PMID 12383937]; GO_function: GO:0015431 - glutathione S-conjugate-exporting ATPase activity [Evidence IDA] [PMID 12755704]; GO_function: GO:0015431 - glutathione S-conjugate-exporting ATPase activity [Evidence IDA] [PMID 9217966]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0015723 - bilirubin transport [Evidence IGI,IMP] [PMID 10790694]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0046686 - response to cadmium ion [Evidence IEA]; GO_process: GO:0010038 - response to metal ion [Evidence IDA] [PMID 10220408]; GO_process: GO:0010038 - response to metal ion [Evidence IDA] [PMID 12755704]; GO_process: GO:0010038 - response to metal ion [Evidence IDA] [PMID 9217966]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IMP] [PMID 10790694]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; GO_process: GO:0042144 - vacuole fusion, non-autophagic [Evidence IMP] [PMID 23658021]; ATP-binding cassette glutathione S-conjugate transporter YCF1 4764387 YCF1 30035686 YCF1 Sugiyamaella lignohabitans ATP-binding cassette glutathione S-conjugate transporter YCF1 XP_018738468.1 4759687 R 796027 CDS AWJ20_3642 30035687 complement(4765663..4767255) B 1 NC_031674.1 uncharacterized protein 4767255 30035687 AWJ20_3642 Sugiyamaella lignohabitans uncharacterized protein XP_018738469.1 4765663 R 796027 CDS AWJ20_3643 30035688 complement(join(4768008..4772192,4772245..4772421)) B 1 NC_031674.1 chromatin-remodeling histone chaperone SPT6 4772421 SPT6 30035688 SPT6 Sugiyamaella lignohabitans chromatin-remodeling histone chaperone SPT6 XP_018738470.1 4768008 R 796027 CDS AWJ20_3644 30035689 4774445..4775308 B 1 NC_031674.1 Conserved phosphoesterase domain-containing protein; acts together with Emp24p/Erv25p in cargo exit from the ER; deletion confers sensitivity to 4-(N-(S-glutathionylacetyl)amino) phenylarsenoxide (GSAO); GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 14562095]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006888 - ER to Golgi vesicle-mediated transport [Evidence IGI,IMP] [PMID 17989219]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; Ted1p 4775308 TED1 30035689 TED1 Sugiyamaella lignohabitans Ted1p XP_018738471.1 4774445 D 796027 CDS AWJ20_3645 30035690 4776815..4778122 B 1 NC_031674.1 Dihydrolipoamide acetyltransferase component (E2) of the PDC; the pyruvate dehydrogenase complex (PDC) catalyzes the oxidative decarboxylation of pyruvate to acetyl-CoA; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA]; GO_component: GO:0005967 - mitochondrial pyruvate dehydrogenase complex [Evidence IDA] [PMID 2007123]; GO_component: GO:0005967 - mitochondrial pyruvate dehydrogenase complex [Evidence IDA,IPI] [PMID 9038189]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 11914276]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0045254 - pyruvate dehydrogenase complex [Evidence IEA]; GO_function: GO:0004742 - dihydrolipoyllysine-residue acetyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0004742 - dihydrolipoyllysine-residue acetyltransferase activity [Evidence IDA] [PMID 2271545]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016746 - transferase activity, transferring acyl groups [Evidence IEA,IEA]; GO_process: GO:0006086 - acetyl-CoA biosynthetic process from pyruvate [Evidence IDA] [PMID 7947791]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0006090 - pyruvate metabolic process [Evidence IEA]; dihydrolipoyllysine-residue acetyltransferase 4778122 LAT1 30035690 LAT1 Sugiyamaella lignohabitans dihydrolipoyllysine-residue acetyltransferase XP_018738472.1 4776815 D 796027 CDS AWJ20_3646 30035691 4779018..4780847 B 1 NC_031674.1 GTPase-activating protein, stimulates the GTPase activity of Sar1p; component of the Sec23p-Sec24p heterodimer of the COPII vesicle coat, involved in ER to Golgi transport; substrate of Ubp3/Bre5 complex; ubiquitylated by Ub-ligase Rsp5p; proteasome-mediated degradation of Sec23p is regulated by Cdc48p; GO_component: GO:0030127 - COPII vesicle coat [Evidence IEA]; GO_component: GO:0030127 - COPII vesicle coat [Evidence IDA] [PMID 8004676]; GO_component: GO:0012507 - ER to Golgi transport vesicle membrane [Evidence IEA]; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0031410 - cytoplasmic vesicle [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0005096 - GTPase activator activity [Evidence IDA] [PMID 8451644]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0006888 - ER to Golgi vesicle-mediated transport [Evidence IEA]; GO_process: GO:0006886 - intracellular protein transport [Evidence IEA]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0003400 - regulation of COPII vesicle coating [Evidence IDA] [PMID 8451644]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IEA]; GTPase-activating protein SEC23 4780847 SEC23 30035691 SEC23 Sugiyamaella lignohabitans GTPase-activating protein SEC23 XP_018738473.1 4779018 D 796027 CDS AWJ20_3647 30035692 4781302..4782669 B 1 NC_031674.1 Component of the septin ring that is required for cytokinesis; septins are GTP-binding proteins that assemble with other septins into rod-like complexes that can associate with other rods to form filament polymers; septin rings at the mother-bud neck act as scaffolds for recruiting factors needed for cell division and as barriers to prevent diffusion of specific proteins between mother and daughter cells; GO_component: GO:0005619 - ascospore wall [Evidence IDA] [PMID 8636217]; GO_component: GO:0005935 - cellular bud neck [Evidence IEA]; GO_component: GO:0000144 - cellular bud neck septin ring [Evidence IDA] [PMID 1993729]; GO_component: GO:0001400 - mating projection base [Evidence IDA] [PMID 8791410]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005628 - prospore membrane [Evidence IDA] [PMID 18826657]; GO_component: GO:0031105 - septin complex [Evidence IEA]; GO_component: GO:0031105 - septin complex [Evidence IDA] [PMID 18550837]; GO_component: GO:0031105 - septin complex [Evidence IPI] [PMID 9813094]; GO_component: GO:0032160 - septin filament array [Evidence IDA] [PMID 15282341]; GO_function: GO:0005545 - 1-phosphatidylinositol binding [Evidence IDA] [PMID 12665577]; GO_function: GO:0005525 - GTP binding [Evidence IEA,IEA]; GO_function: GO:0005525 - GTP binding [Evidence IDA] [PMID 14597621]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0005198 - structural molecule activity [Evidence IDA] [PMID 18550837]; GO_process: GO:0007049 - cell cycle [Evidence IEA,IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0030011 - maintenance of cell polarity [Evidence IC] [PMID 10882120]; GO_process: GO:0000281 - mitotic cytokinesis [Evidence IDA] [PMID 12636916]; GO_process: GO:0000921 - septin ring assembly [Evidence IMP] [PMID 15282341]; GO_process: GO:0031107 - septin ring disassembly [Evidence IMP] [PMID 12429908]; septin CDC3 4782669 CDC3 30035692 CDC3 Sugiyamaella lignohabitans septin CDC3 XP_018738474.1 4781302 D 796027 CDS AWJ20_3648 30035693 4783358..4786123 B 1 NC_031674.1 WD40 domain-containing protein involved in endosomal recycling; forms a complex with Rrt2p that functions in the retromer-mediated pathway for recycling internalized cell-surface proteins; evidence it interacts with Trm7p for 2'-O-methylation of N34 of substrate tRNAs; has a role in regulation of Ty1 transposition; human ortholog is WDR6; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 21880895]; GO_component: GO:0005768 - endosome [Evidence IEA,IEA]; GO_component: GO:0005768 - endosome [Evidence IDA] [PMID 21880895]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0032456 - endocytic recycling [Evidence IMP] [PMID 21880895]; GO_process: GO:0008033 - tRNA processing [Evidence IEA]; Rtt10p 4786123 RTT10 30035693 RTT10 Sugiyamaella lignohabitans Rtt10p XP_018738475.1 4783358 D 796027 CDS AWJ20_3649 30035694 complement(4786195..4787526) B 1 NC_031674.1 uncharacterized protein 4787526 30035694 AWJ20_3649 Sugiyamaella lignohabitans uncharacterized protein XP_018738476.1 4786195 R 796027 CDS AWJ20_3650 30035696 4787680..4790634 B 1 NC_031674.1 Vacuolar membrane protein that is a subunit of the HOPS complex; essential for membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of protein transport; the homotypic vacuole fusion and vacuole protein sorting complex is also known as the HOPS complex; GO_component: GO:0030897 - HOPS complex [Evidence IPI] [PMID 10944212]; GO_component: GO:0005768 - endosome [Evidence IDA] [PMID 14562095]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 9111041]; GO_component: GO:0005773 - vacuole [Evidence IEA,IEA]; GO_function: GO:0017112 - Rab guanyl-nucleotide exchange factor activity [Evidence IPI] [PMID 11062257]; GO_function: GO:0035091 - phosphatidylinositol binding [Evidence IDA] [PMID 16601699]; GO_process: GO:0006886 - intracellular protein transport [Evidence IEA]; GO_process: GO:0034727 - piecemeal microautophagy of nucleus [Evidence IMP] [PMID 18701704]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0015031 - protein transport [Evidence IMP] [PMID 9184222]; GO_process: GO:0035542 - regulation of SNARE complex assembly [Evidence IDA] [PMID 18385512]; GO_process: GO:0032889 - regulation of vacuole fusion, non-autophagic [Evidence IDA] [PMID 18385512]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0006624 - vacuolar protein processing [Evidence IMP] [PMID 9159129]; GO_process: GO:0042144 - vacuole fusion, non-autophagic [Evidence IDA,IMP] [PMID 10944212]; GO_process: GO:0007033 - vacuole organization [Evidence IMP] [PMID 9111041]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IEA]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IMP] [PMID 12730205]; Vps41p 4790634 VPS41 30035696 VPS41 Sugiyamaella lignohabitans Vps41p XP_018738477.1 4787680 D 796027 CDS AWJ20_3651 30035697 4792862..4793179 B 1 NC_031674.1 General amino acid permease; Gap1p senses the presence of amino acid substrates to regulate localization to the plasma membrane when needed; essential for invasive growth; GO_component: GO:0030134 - ER to Golgi transport vesicle [Evidence IDA] [PMID 12499351]; GO_component: GO:0005768 - endosome [Evidence IDA] [PMID 15039776]; GO_component: GO:0000328 - fungal-type vacuole lumen [Evidence IDA] [PMID 15039776]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0005887 - integral component of plasma membrane [Evidence IDA] [PMID 9199164]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA,IEA]; GO_component: GO:0005771 - multivesicular body [Evidence IMP] [PMID 14523026]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 15623581]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 15707981]; GO_function: GO:0015193 - L-proline transmembrane transporter activity [Evidence IGI] [PMID 14968425]; GO_function: GO:0015171 - amino acid transmembrane transporter activity [Evidence IEA]; GO_function: GO:0015171 - amino acid transmembrane transporter activity [Evidence IMP] [PMID 6759873]; GO_function: GO:0015203 - polyamine transmembrane transporter activity [Evidence IMP] [PMID 15707981]; GO_process: GO:0003333 - amino acid transmembrane transport [Evidence IEA]; GO_process: GO:0006865 - amino acid transport [Evidence IEA,IEA]; GO_process: GO:0006865 - amino acid transport [Evidence IMP] [PMID 6759873]; GO_process: GO:0015846 - polyamine transport [Evidence IMP] [PMID 15707981]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; amino acid permease GAP1 4793179 GAP1 30035697 GAP1 Sugiyamaella lignohabitans amino acid permease GAP1 XP_018738478.1 4792862 D 796027 CDS AWJ20_3652 30035698 4794090..4794746 B 1 NC_031674.1 General amino acid permease; Gap1p senses the presence of amino acid substrates to regulate localization to the plasma membrane when needed; essential for invasive growth; GO_component: GO:0030134 - ER to Golgi transport vesicle [Evidence IDA] [PMID 12499351]; GO_component: GO:0005768 - endosome [Evidence IDA] [PMID 15039776]; GO_component: GO:0000328 - fungal-type vacuole lumen [Evidence IDA] [PMID 15039776]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0005887 - integral component of plasma membrane [Evidence IDA] [PMID 9199164]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA,IEA]; GO_component: GO:0005771 - multivesicular body [Evidence IMP] [PMID 14523026]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 15623581]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 15707981]; GO_function: GO:0015193 - L-proline transmembrane transporter activity [Evidence IGI] [PMID 14968425]; GO_function: GO:0015171 - amino acid transmembrane transporter activity [Evidence IEA]; GO_function: GO:0015171 - amino acid transmembrane transporter activity [Evidence IMP] [PMID 6759873]; GO_function: GO:0015203 - polyamine transmembrane transporter activity [Evidence IMP] [PMID 15707981]; GO_process: GO:0003333 - amino acid transmembrane transport [Evidence IEA]; GO_process: GO:0006865 - amino acid transport [Evidence IEA,IEA]; GO_process: GO:0006865 - amino acid transport [Evidence IMP] [PMID 6759873]; GO_process: GO:0015846 - polyamine transport [Evidence IMP] [PMID 15707981]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; amino acid permease GAP1 4794746 GAP1 30035698 GAP1 Sugiyamaella lignohabitans amino acid permease GAP1 XP_018738479.1 4794090 D 796027 CDS AWJ20_3653 30035699 4794876..4796366 B 1 NC_031674.1 JmjC domain family histone demethylase specific for H3-K36; similar to proteins found in human, mouse, drosophila, X. laevis, C. elegans, and S. pombe; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0051213 - dioxygenase activity [Evidence IEA]; GO_function: GO:0051864 - histone demethylase activity (H3-K36 specific) [Evidence IEA]; GO_function: GO:0051864 - histone demethylase activity (H3-K36 specific) [Evidence IDA] [PMID 16362057]; GO_function: GO:0051864 - histone demethylase activity (H3-K36 specific) [Evidence IMP] [PMID 17369256]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0035064 - methylated histone binding [Evidence IDA] [PMID 17142463]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0016568 - chromatin modification [Evidence IEA]; GO_process: GO:0070544 - histone H3-K36 demethylation [Evidence IEA]; GO_process: GO:0016577 - histone demethylation [Evidence IDA] [PMID 16362057]; GO_process: GO:0016577 - histone demethylation [Evidence IMP] [PMID 17369256]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Jhd1p 4796366 JHD1 30035699 JHD1 Sugiyamaella lignohabitans Jhd1p XP_018738480.1 4794876 D 796027 CDS AWJ20_3654 30035700 complement(4796477..4800025) B 1 NC_031674.1 Alpha subunit of COPI vesicle coatomer complex; complex surrounds transport vesicles in the early secretory pathway; GO_component: GO:0030126 - COPI vesicle coat [Evidence IEA]; GO_component: GO:0030126 - COPI vesicle coat [Evidence IMP,ISS] [PMID 8001155]; GO_component: GO:0030663 - COPI-coated vesicle membrane [Evidence IEA]; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0031410 - cytoplasmic vesicle [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0030117 - membrane coat [Evidence IEA]; GO_function: GO:0005198 - structural molecule activity [Evidence IEA]; GO_function: GO:0043130 - ubiquitin binding [Evidence IDA] [PMID 21070969]; GO_process: GO:0006888 - ER to Golgi vesicle-mediated transport [Evidence IMP] [PMID 9427388]; GO_process: GO:0006886 - intracellular protein transport [Evidence IEA]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006890 - retrograde vesicle-mediated transport, Golgi to ER [Evidence IMP] [PMID 8001155]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IEA,IEA]; Cop1p 4800025 COP1 30035700 COP1 Sugiyamaella lignohabitans Cop1p XP_018738481.1 4796477 R 796027 CDS AWJ20_3655 30035701 4800925..4802628 B 1 NC_031674.1 uncharacterized protein 4802628 30035701 AWJ20_3655 Sugiyamaella lignohabitans uncharacterized protein XP_018738482.1 4800925 D 796027 CDS AWJ20_3656 30035702 complement(4802710..4805088) B 1 NC_031674.1 Protein that stimulates the ATPase and helicase activities of Prp43p; acts with Prp43p to stimulate 18s rRNA maturation by Nob1p; overexpression antagonizes the suppression of splicing defects by spp382 mutants; component of pre-ribosomal particles; relocalizes from nucleus to nucleolus upon DNA replication stress; GO_component: GO:0030686 - 90S preribosome [Evidence IDA] [PMID 19927118]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 22842922]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 19927118]; GO_component: GO:0030688 - preribosome, small subunit precursor [Evidence IDA] [PMID 16227579]; GO_component: GO:0030688 - preribosome, small subunit precursor [Evidence IDA] [PMID 19927118]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_process: GO:0008380 - RNA splicing [Evidence IEA]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0000398 - mRNA splicing, via spliceosome [Evidence IGI] [PMID 16945917]; GO_process: GO:0030490 - maturation of SSU-rRNA [Evidence IGI] [PMID 19801658]; GO_process: GO:0030490 - maturation of SSU-rRNA [Evidence IGI] [PMID 19927118]; GO_process: GO:0032781 - positive regulation of ATPase activity [Evidence IDA,IMP] [PMID 19927118]; GO_process: GO:0051096 - positive regulation of helicase activity [Evidence IDA,IMP] [PMID 19927118]; GO_process: GO:0006364 - rRNA processing [Evidence IGI] [PMID 19927118]; Sqs1p 4805088 SQS1 30035702 SQS1 Sugiyamaella lignohabitans Sqs1p XP_018738483.1 4802710 R 796027 CDS AWJ20_3657 30035703 complement(4805883..4806674) B 1 NC_031674.1 uncharacterized protein 4806674 30035703 AWJ20_3657 Sugiyamaella lignohabitans uncharacterized protein XP_018738484.1 4805883 R 796027 CDS AWJ20_3658 30035704 complement(4807137..4807976) B 1 NC_031674.1 Conserved cysteine protease required for autophagy; cleaves Atg8p to a form required for autophagosome and Cvt vesicle generation; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 11149920]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0004197 - cysteine-type endopeptidase activity [Evidence IDA,IMP] [PMID 11038174]; GO_function: GO:0008234 - cysteine-type peptidase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_process: GO:0006501 - C-terminal protein lipidation [Evidence IMP] [PMID 11038174]; GO_process: GO:0032258 - CVT pathway [Evidence IMP] [PMID 11149920]; GO_process: GO:0000045 - autophagic vacuole assembly [Evidence IMP] [PMID 11149920]; GO_process: GO:0006914 - autophagy [Evidence IEA]; GO_process: GO:0044805 - late nucleophagy [Evidence IMP] [PMID 22768199]; GO_process: GO:0000422 - mitochondrion degradation [Evidence IMP] [PMID 19793921]; GO_process: GO:0034727 - piecemeal microautophagy of nucleus [Evidence IMP] [PMID 18701704]; GO_process: GO:0051697 - protein delipidation [Evidence IDA] [PMID 17632063]; GO_process: GO:0016485 - protein processing [Evidence IMP] [PMID 11149920]; GO_process: GO:0006612 - protein targeting to membrane [Evidence IMP] [PMID 11149920]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006508 - proteolysis [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Atg4p 4807976 ATG4 30035704 ATG4 Sugiyamaella lignohabitans Atg4p XP_018738485.1 4807137 R 796027 CDS AWJ20_3659 30035705 4808882..4809583 B 1 NC_031674.1 Exosome non-catalytic core component; involved in 3'-5' RNA processing and degradation in both the nucleus and the cytoplasm; predicted to contain both S1 and KH RNA binding domains; has similarity to human hRrp40p (EXOSC3); GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0000177 - cytoplasmic exosome (RNase complex) [Evidence IDA] [PMID 10465791]; GO_component: GO:0000177 - cytoplasmic exosome (RNase complex) [Evidence IDA] [PMID 19046973]; GO_component: GO:0000178 - exosome (RNase complex) [Evidence IEA,IEA]; GO_component: GO:0000176 - nuclear exosome (RNase complex) [Evidence IDA] [PMID 10465791]; GO_component: GO:0000176 - nuclear exosome (RNase complex) [Evidence IDA] [PMID 19046973]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA,IEA]; GO_function: GO:0003723 - RNA binding [Evidence IDA] [PMID 17391830]; GO_function: GO:0030145 - manganese ion binding [Evidence IDA] [PMID 17159918]; GO_process: GO:0000467 - exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 10465791]; GO_process: GO:0000467 - exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 10508172]; GO_process: GO:0043628 - ncRNA 3'-end processing [Evidence IC] [PMID 10465791]; GO_process: GO:0070651 - nonfunctional rRNA decay [Evidence IC] [PMID 10465791]; GO_process: GO:0071042 - nuclear polyadenylation-dependent mRNA catabolic process [Evidence IC] [PMID 10465791]; GO_process: GO:0071035 - nuclear polyadenylation-dependent rRNA catabolic process [Evidence IMP] [PMID 10465791]; GO_process: GO:0071038 - nuclear polyadenylation-dependent tRNA catabolic process [Evidence IDA] [PMID 15828860]; GO_process: GO:0071038 - nuclear polyadenylation-dependent tRNA catabolic process [Evidence IDA] [PMID 17643380]; GO_process: GO:0070478 - nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay [Evidence IC] [PMID 10465791]; GO_process: GO:0034427 - nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5' [Evidence IC] [PMID 10465791]; GO_process: GO:0070481 - nuclear-transcribed mRNA catabolic process, non-stop decay [Evidence IC] [PMID 10465791]; GO_process: GO:0071051 - polyadenylation-dependent snoRNA 3'-end processing [Evidence IC] [PMID 10465791]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; Rrp40p 4809583 RRP40 30035705 RRP40 Sugiyamaella lignohabitans Rrp40p XP_018738486.1 4808882 D 796027 CDS AWJ20_3660 30035707 complement(4809715..4811322) B 1 NC_031674.1 Phosphatidylinositol 3,5-bisphosphate (PtdIns[3,5]P) phosphatase; required for efficient mating and response to osmotic shock; physically associates with and regulated by Vac14p; contains a SAC1-like domain; GO_component: GO:0070772 - PAS complex [Evidence IDA,IPI] [PMID 19037259]; GO_component: GO:0019898 - extrinsic component of membrane [Evidence IDA] [PMID 11950935]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 14528018]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0043813 - phosphatidylinositol-3,5-bisphosphate 5-phosphatase activity [Evidence IDA] [PMID 14528018]; GO_function: GO:0042578 - phosphoric ester hydrolase activity [Evidence IEA]; GO_process: GO:0046856 - phosphatidylinositol dephosphorylation [Evidence IGI] [PMID 11950935]; GO_process: GO:0046856 - phosphatidylinositol dephosphorylation [Evidence IDA] [PMID 14528018]; phosphatidylinositol-3,5-bisphosphate 5-phosphatase 4811322 FIG4 30035707 FIG4 Sugiyamaella lignohabitans phosphatidylinositol-3,5-bisphosphate 5-phosphatase XP_018738487.1 4809715 R 796027 CDS AWJ20_3662 30035708 4813262..4816303 B 1 NC_031674.1 AdoMet-dependent tRNA methyltransferase; also involved in methoxycarbonylation; required for the synthesis of wybutosine (yW), a modified guanosine found at the 3'-position adjacent to the anticodon of phe-tRNA; similarity to Ppm1p; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0008168 - methyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0008175 - tRNA methyltransferase activity [Evidence IDA,IMP] [PMID 16642040]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0032259 - methylation [Evidence IEA,IEA]; GO_process: GO:0030488 - tRNA methylation [Evidence IDA,IMP] [PMID 16642040]; GO_process: GO:0008033 - tRNA processing [Evidence IEA]; GO_process: GO:0031591 - wybutosine biosynthetic process [Evidence IMP] [PMID 16642040]; GO_process: GO:0031591 - wybutosine biosynthetic process [Evidence IMP] [PMID 17150819]; Ppm2p 4816303 PPM2 30035708 PPM2 Sugiyamaella lignohabitans Ppm2p XP_018738488.1 4813262 D 796027 CDS AWJ20_3663 30035709 complement(join(4816408..4817387,4817481..4817628)) B 1 NC_031674.1 Protein involved in transcription termination by RNA polymerase II; interacts with exonuclease Rat1p and Rai1p; has an RPR domain (carboxy-terminal domain interacting domain); also involved in regulation of Ty1 transposition; GO_component: GO:0000790 - nuclear chromatin [Evidence IDA] [PMID 15565157]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0035861 - site of double-strand break [Evidence IDA] [PMID 22355353]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0000993 - RNA polymerase II core binding [Evidence IPI] [PMID 15565157]; GO_function: GO:0000993 - RNA polymerase II core binding [Evidence IDA] [PMID 20818393]; GO_process: GO:0042769 - DNA damage response, detection of DNA damage [Evidence IMP] [PMID 22355353]; GO_process: GO:0031124 - mRNA 3'-end processing [Evidence IGI,IMP] [PMID 15565157]; GO_process: GO:0010526 - negative regulation of transposition, RNA-mediated [Evidence IMP] [PMID 11779788]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Rtt103p 4817628 RTT103 30035709 RTT103 Sugiyamaella lignohabitans Rtt103p XP_018738489.1 4816408 R 796027 CDS AWJ20_3664 30035710 4817897..4818154 B 1 NC_031674.1 clathrin light chain 4818154 clc1 30035710 clc1 Sugiyamaella lignohabitans clathrin light chain XP_018738490.1 4817897 D 796027 CDS AWJ20_3665 30035711 4821254..4823065 B 1 NC_031674.1 uncharacterized protein 4823065 30035711 AWJ20_3665 Sugiyamaella lignohabitans uncharacterized protein XP_018738491.1 4821254 D 796027 CDS AWJ20_3666 30035712 complement(4823779..4825542) B 1 NC_031674.1 Golgi matrix protein; involved in the structural organization of the cis-Golgi; interacts genetically with COG3 and USO1; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0005794 - Golgi apparatus [Evidence ISS] [PMID 10512869]; GO_component: GO:0005794 - Golgi apparatus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005796 - Golgi lumen [Evidence IEA]; GO_component: GO:0000139 - Golgi membrane [Evidence IDA] [PMID 15504911]; GO_function: GO:0051020 - GTPase binding [Evidence IDA] [PMID 15504911]; GO_process: GO:0006888 - ER to Golgi vesicle-mediated transport [Evidence IGI] [PMID 10512869]; GO_process: GO:0006888 - ER to Golgi vesicle-mediated transport [Evidence IGI] [PMID 10562277]; GO_process: GO:0000042 - protein targeting to Golgi [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IEA]; Rud3p 4825542 RUD3 30035712 RUD3 Sugiyamaella lignohabitans Rud3p XP_018738492.1 4823779 R 796027 CDS AWJ20_3667 30035713 join(4826110..4826150,4826214..4828845) B 1 NC_031674.1 Subunit of heteropentameric Replication factor C (RF-C); RF-C is a DNA binding protein and ATPase that acts as a clamp loader of the proliferating cell nuclear antigen (PCNA) processivity factor for DNA polymerases delta and epsilon; GO_component: GO:0005663 - DNA replication factor C complex [Evidence IEA]; GO_component: GO:0005663 - DNA replication factor C complex [Evidence IDA] [PMID 7651383]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0003689 - DNA clamp loader activity [Evidence IEA]; GO_function: GO:0003689 - DNA clamp loader activity [Evidence IDA] [PMID 8995429]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0006281 - DNA repair [Evidence IMP] [PMID 8770585]; GO_process: GO:0006260 - DNA replication [Evidence IEA,IEA]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0006272 - leading strand elongation [Evidence IDA] [PMID 1346062]; GO_process: GO:0006298 - mismatch repair [Evidence IGI] [PMID 9504910]; GO_process: GO:0000278 - mitotic cell cycle [Evidence IMP] [PMID 6749598]; GO_process: GO:0000278 - mitotic cell cycle [Evidence IMP] [PMID 6749599]; GO_process: GO:0000278 - mitotic cell cycle [Evidence IGI] [PMID 7516465]; replication factor C subunit 1 4828845 RFC1 30035713 RFC1 Sugiyamaella lignohabitans replication factor C subunit 1 XP_018738493.1 4826110 D 796027 CDS AWJ20_3668 30035714 complement(4829035..4829409) B 1 NC_031674.1 uncharacterized protein 4829409 30035714 AWJ20_3668 Sugiyamaella lignohabitans uncharacterized protein XP_018738494.1 4829035 R 796027 CDS AWJ20_3669 30035715 4829503..4832043 B 1 NC_031674.1 Large subunit of the nuclear mRNA cap-binding protein complex; interacts with Npl3p to carry nuclear poly(A)+ mRNA to cytoplasm; also involved in nuclear mRNA degradation and telomere maintenance; orthologous to mammalian CBP80; GO_component: GO:0000243 - commitment complex [Evidence IPI] [PMID 10072386]; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005846 - nuclear cap binding complex [Evidence IEA]; GO_component: GO:0005846 - nuclear cap binding complex [Evidence IDA] [PMID 8811086]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_component: GO:0048471 - perinuclear region of cytoplasm [Evidence IEA]; GO_component: GO:0005844 - polysome [Evidence IDA] [PMID 22072789]; GO_function: GO:0003723 - RNA binding [Evidence IEA,IEA]; GO_function: GO:0000339 - RNA cap binding [Evidence IEA]; GO_function: GO:0003729 - mRNA binding [Evidence IPI] [PMID 10072386]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_process: GO:0006370 - 7-methylguanosine mRNA capping [Evidence IEA]; GO_process: GO:0016070 - RNA metabolic process [Evidence IEA]; GO_process: GO:0008380 - RNA splicing [Evidence IEA]; GO_process: GO:0045292 - mRNA cis splicing, via spliceosome [Evidence IEA]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0000398 - mRNA splicing, via spliceosome [Evidence IPI] [PMID 10072386]; GO_process: GO:0051028 - mRNA transport [Evidence IEA,IEA]; GO_process: GO:0000184 - nuclear-transcribed mRNA catabolic process, nonsense-mediated decay [Evidence IEA]; GO_process: GO:0000184 - nuclear-transcribed mRNA catabolic process, nonsense-mediated decay [Evidence IDA,IPI] [PMID 15753296]; GO_process: GO:0006970 - response to osmotic stress [Evidence IMP] [PMID 22072789]; GO_process: GO:0006810 - transport [Evidence IEA]; Sto1p 4832043 STO1 30035715 STO1 Sugiyamaella lignohabitans Sto1p XP_018738495.1 4829503 D 796027 CDS AWJ20_3670 30035717 complement(4833546..4835018) B 1 NC_031674.1 Indole-3-glycerol-phosphate synthase; forms bifunctional hetero-oligomeric anthranilate synthase:indole-3-glycerol phosphate synthase enzyme complex with Trp2p; GO_component: GO:0005950 - anthranilate synthase complex [Evidence IPI] [PMID 3881257]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0004049 - anthranilate synthase activity [Evidence IEA]; GO_function: GO:0004049 - anthranilate synthase activity [Evidence IGI] [PMID 3881257]; GO_function: GO:0003824 - catalytic activity [Evidence IEA,IEA]; GO_function: GO:0004425 - indole-3-glycerol-phosphate synthase activity [Evidence IEA,IEA]; GO_function: GO:0004425 - indole-3-glycerol-phosphate synthase activity [Evidence IMP] [PMID 3881257]; GO_function: GO:0004425 - indole-3-glycerol-phosphate synthase activity [Evidence IGI,ISS] [PMID 6323449]; GO_function: GO:0016829 - lyase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0009073 - aromatic amino acid family biosynthetic process [Evidence IEA]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0006541 - glutamine metabolic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA,IEA]; GO_process: GO:0000162 - tryptophan biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0000162 - tryptophan biosynthetic process [Evidence IMP] [PMID 10790693]; GO_process: GO:0006568 - tryptophan metabolic process [Evidence IEA]; bifunctional anthranilate synthase/indole-3-glycerol-phosphate synthase 4835018 TRP3 30035717 TRP3 Sugiyamaella lignohabitans bifunctional anthranilate synthase/indole-3-glycerol-phosphate synthase XP_018738496.1 4833546 R 796027 CDS AWJ20_3671 30035718 complement(4836648..4839020) B 1 NC_031674.1 uncharacterized protein 4839020 30035718 AWJ20_3671 Sugiyamaella lignohabitans uncharacterized protein XP_018738497.1 4836648 R 796027 CDS AWJ20_3672 30035719 4841207..4841977 B 1 NC_031674.1 UDP-glucose:dolichyl-phosphate glucosyltransferase; involved in asparagine-linked glycosylation in the endoplasmic reticulum; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IDA] [PMID 9560251]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0004581 - dolichyl-phosphate beta-glucosyltransferase activity [Evidence IEA]; GO_function: GO:0004581 - dolichyl-phosphate beta-glucosyltransferase activity [Evidence IDA] [PMID 8076653]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA]; GO_process: GO:0006487 - protein N-linked glycosylation [Evidence TAS] [PMID 8076653]; GO_process: GO:0006486 - protein glycosylation [Evidence IEA]; dolichyl-phosphate beta-glucosyltransferase 4841977 ALG5 30035719 ALG5 Sugiyamaella lignohabitans dolichyl-phosphate beta-glucosyltransferase XP_018738498.1 4841207 D 796027 CDS AWJ20_3673 30035720 complement(4842201..4844057) B 1 NC_031674.1 Phosphatidylinositol phosphate (PtdInsP) phosphatase; involved in hydrolysis of PtdIns[4]P in the early and medial Golgi; regulated by interaction with Vps74p; ER localized transmembrane protein which cycles through the Golgi; involved in protein trafficking and processing, secretion, and cell wall maintenance; regulates sphingolipid biosynthesis through the modulation of PtdIns(4)P metabolism; GO_component: GO:0005797 - Golgi medial cisterna [Evidence IDA] [PMID 22553352]; GO_component: GO:0035339 - SPOTS complex [Evidence IDA] [PMID 20182505]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0030173 - integral component of Golgi membrane [Evidence IDA,IMP] [PMID 15657391]; GO_component: GO:0030173 - integral component of Golgi membrane [Evidence IDA] [PMID 8314848]; GO_component: GO:0030176 - integral component of endoplasmic reticulum membrane [Evidence IDA,IMP] [PMID 11514624]; GO_component: GO:0030176 - integral component of endoplasmic reticulum membrane [Evidence IMP] [PMID 11792713]; GO_component: GO:0030176 - integral component of endoplasmic reticulum membrane [Evidence IDA,IMP] [PMID 15657391]; GO_component: GO:0030176 - integral component of endoplasmic reticulum membrane [Evidence IDA] [PMID 8314848]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IDA] [PMID 16407407]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016791 - phosphatase activity [Evidence IMP] [PMID 22452743]; GO_function: GO:0043813 - phosphatidylinositol-3,5-bisphosphate 5-phosphatase activity [Evidence IDA] [PMID 10625610]; GO_function: GO:0004438 - phosphatidylinositol-3-phosphatase activity [Evidence IDA] [PMID 10625610]; GO_function: GO:0043812 - phosphatidylinositol-4-phosphate phosphatase activity [Evidence IDA] [PMID 10625610]; GO_function: GO:0042578 - phosphoric ester hydrolase activity [Evidence IEA]; GO_process: GO:0046856 - phosphatidylinositol dephosphorylation [Evidence IDA,IGI,IMP] [PMID 10625610]; GO_process: GO:0046856 - phosphatidylinositol dephosphorylation [Evidence IMP] [PMID 22553352]; phosphatidylinositol-3-phosphatase SAC1 4844057 SAC1 30035720 SAC1 Sugiyamaella lignohabitans phosphatidylinositol-3-phosphatase SAC1 XP_018738499.1 4842201 R 796027 CDS AWJ20_3674 30035721 complement(join(4844257..4846839,4846905..4847597)) B 1 NC_031674.1 chromatin-modulating protein MRC1 4847597 MRC1 30035721 MRC1 Sugiyamaella lignohabitans chromatin-modulating protein MRC1 XP_018738500.1 4844257 R 796027 CDS AWJ20_3675 30035722 4849170..4850045 B 1 NC_031674.1 Guanine deaminase; a catabolic enzyme of the guanine salvage pathway producing xanthine and ammonia from guanine; activity is low in exponentially-growing cultures but expression is increased in post-diauxic and stationary-phase cultures; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0008892 - guanine deaminase activity [Evidence IEA,IEA]; GO_function: GO:0008892 - guanine deaminase activity [Evidence IDA] [PMID 15565584]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA,IEA]; GO_function: GO:0016811 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides [Evidence ISS] [PMID 10542258]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0006147 - guanine catabolic process [Evidence IEA,IEA]; GO_process: GO:0046098 - guanine metabolic process [Evidence ISS] [PMID 10542258]; guanine deaminase 4850045 GUD1 30035722 GUD1 Sugiyamaella lignohabitans guanine deaminase XP_018738501.1 4849170 D 796027 CDS AWJ20_3676 30035723 complement(4850716..4852146) B 1 NC_031674.1 6-phosphogluconate dehydrogenase (decarboxylating); catalyzes an NADPH regenerating reaction in the pentose phosphate pathway; required for growth on D-glucono-delta-lactone; GND2 has a paralog, GND1, that arose from the whole genome duplication; GO_component: GO:0005829 - cytosol [Evidence TAS] [PMID 11298766]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 16622836]; GO_function: GO:0050661 - NADP binding [Evidence IEA]; GO_function: GO:0050662 - coenzyme binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor [Evidence IEA]; GO_function: GO:0004616 - phosphogluconate dehydrogenase (decarboxylating) activity [Evidence IEA,IEA]; GO_function: GO:0004616 - phosphogluconate dehydrogenase (decarboxylating) activity [Evidence IMP] [PMID 1328471]; GO_process: GO:0019521 - D-gluconate metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0006098 - pentose-phosphate shunt [Evidence IEA,IEA,IEA]; GO_process: GO:0009051 - pentose-phosphate shunt, oxidative branch [Evidence IGI,IMP] [PMID 1328471]; phosphogluconate dehydrogenase (decarboxylating) GND2 4852146 GND2 30035723 GND2 Sugiyamaella lignohabitans phosphogluconate dehydrogenase (decarboxylating) GND2 XP_018738502.1 4850716 R 796027 CDS AWJ20_3677 30035724 4855423..4856241 B 1 NC_031674.1 Highly conserved iron-sulfur cluster binding protein; localized in the cytoplasm; forms a complex with Nbp35p that is involved in iron-sulfur protein assembly in the cytosol; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 12970194]; GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA,IEA,IEA]; GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IDA] [PMID 17401378]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016887 - ATPase activity [Evidence TAS] [PMID 12970194]; GO_function: GO:0051536 - iron-sulfur cluster binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0016226 - iron-sulfur cluster assembly [Evidence IEA,IEA]; GO_process: GO:0016226 - iron-sulfur cluster assembly [Evidence IMP] [PMID 12970194]; GO_process: GO:0016226 - iron-sulfur cluster assembly [Evidence IDA] [PMID 17401378]; GO_process: GO:0002098 - tRNA wobble uridine modification [Evidence IMP] [PMID 18755837]; Cfd1p 4856241 CFD1 30035724 CFD1 Sugiyamaella lignohabitans Cfd1p XP_018738503.1 4855423 D 796027 CDS AWJ20_3678 30035725 complement(4856463..4858028) B 1 NC_031674.1 uncharacterized protein 4858028 30035725 AWJ20_3678 Sugiyamaella lignohabitans uncharacterized protein XP_018738504.1 4856463 R 796027 CDS AWJ20_3679 30035726 4858576..4859718 B 1 NC_031674.1 Uridine diphosphate-N-acetylglucosamine (UDP-GlcNAc) transporter; required for cell wall chitin synthesis; localized to the ER; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA,IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 10788474]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0005462 - UDP-N-acetylglucosamine transmembrane transporter activity [Evidence IMP] [PMID 10788474]; GO_function: GO:0005338 - nucleotide-sugar transmembrane transporter activity [Evidence IEA]; GO_process: GO:0015788 - UDP-N-acetylglucosamine transport [Evidence IMP] [PMID 10788474]; GO_process: GO:0015786 - UDP-glucose transport [Evidence IGI,IMP] [PMID 18693752]; GO_process: GO:0008643 - carbohydrate transport [Evidence IEA]; GO_process: GO:0034221 - fungal-type cell wall chitin biosynthetic process [Evidence IMP] [PMID 10788474]; GO_process: GO:1901679 - nucleotide transmembrane transport [Evidence IEA]; GO_process: GO:0015780 - nucleotide-sugar transport [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IMP] [PMID 10788474]; GO_process: GO:0006810 - transport [Evidence IEA]; Yea4p 4859718 YEA4 30035726 YEA4 Sugiyamaella lignohabitans Yea4p XP_018738505.1 4858576 D 796027 CDS AWJ20_3680 30035728 complement(4859898..4861238) B 1 NC_031674.1 uncharacterized protein 4861238 30035728 AWJ20_3680 Sugiyamaella lignohabitans uncharacterized protein XP_018738506.1 4859898 R 796027 CDS AWJ20_3681 30035729 4863050..4863931 B 1 NC_031674.1 Component of the histone deacetylase Rpd3L complex; possibly involved in cell fusion and invasive growth; relocalizes to the cytosol in response to hypoxia; GO_component: GO:0033698 - Rpd3L complex [Evidence IDA] [PMID 16286007]; GO_component: GO:0033698 - Rpd3L complex [Evidence IDA] [PMID 16286008]; GO_component: GO:0033698 - Rpd3L complex [Evidence IDA] [PMID 16314178]; GO_component: GO:0033698 - Rpd3L complex [Evidence IDA] [PMID 19040720]; GO_component: GO:0070210 - Rpd3L-Expanded complex [Evidence IDA] [PMID 19040720]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 22932476]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22932476]; GO_function: GO:0004407 - histone deacetylase activity [Evidence IMP] [PMID 16275642]; GO_process: GO:0016568 - chromatin modification [Evidence IEA]; GO_process: GO:0000747 - conjugation with cellular fusion [Evidence IMP] [PMID 10628851]; GO_process: GO:0001403 - invasive growth in response to glucose limitation [Evidence IMP] [PMID 10628851]; GO_process: GO:0061188 - negative regulation of chromatin silencing at rDNA [Evidence IMP] [PMID 16286008]; GO_process: GO:0061186 - negative regulation of chromatin silencing at silent mating-type cassette [Evidence IMP] [PMID 16286008]; GO_process: GO:0031939 - negative regulation of chromatin silencing at telomere [Evidence IMP] [PMID 16286008]; GO_process: GO:0031939 - negative regulation of chromatin silencing at telomere [Evidence IMP] [PMID 16314178]; GO_process: GO:0031939 - negative regulation of chromatin silencing at telomere [Evidence IMP] [PMID 19372273]; GO_process: GO:0000122 - negative regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 16275642]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; GO_process: GO:0061587 - transfer RNA gene-mediated silencing [Evidence IMP] [PMID 23707796]; Rxt2p 4863931 RXT2 30035729 RXT2 Sugiyamaella lignohabitans Rxt2p XP_018738507.1 4863050 D 796027 CDS AWJ20_3682 30035730 complement(4864200..4866797) B 1 NC_031674.1 Protein implicated in Mms22-dependent DNA repair during S phase; involved in recruiting the SMC5/6 complex to double-strand breaks; DNA damage induces phosphorylation by Mec1p at one or more SQ/TQ motifs; interacts with Mms22p and Slx4p; has four BRCT domains; has a role in regulation of Ty1 transposition; relative distribution to nuclear foci increases upon DNA replication stress; GO_component: GO:0035361 - Cul8-RING ubiquitin ligase complex [Evidence IDA] [PMID 20139071]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006281 - DNA repair [Evidence IEA]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0006302 - double-strand break repair [Evidence IMP] [PMID 14988729]; GO_process: GO:0010526 - negative regulation of transposition, RNA-mediated [Evidence IMP] [PMID 11779788]; Rtt107p 4866797 RTT107 30035730 RTT107 Sugiyamaella lignohabitans Rtt107p XP_018738508.1 4864200 R 796027 CDS AWJ20_3683 30035731 4867879..4869414 B 1 NC_031674.1 Aspartic protease; member of the yapsin family of proteases involved in cell wall growth and maintenance; attached to the plasma membrane via a glycosylphosphatidylinositol (GPI) anchor; GO_component: GO:0031225 - anchored component of membrane [Evidence IEA]; GO_component: GO:0046658 - anchored component of plasma membrane [Evidence IDA,IPI] [PMID 11016834]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_function: GO:0004190 - aspartic-type endopeptidase activity [Evidence IEA,IEA]; GO_function: GO:0004190 - aspartic-type endopeptidase activity [Evidence IDA,ISS] [PMID 10191273]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_process: GO:0031505 - fungal-type cell wall organization [Evidence IGI] [PMID 16087741]; GO_process: GO:0006508 - proteolysis [Evidence IEA,IEA]; Yps3p 4869414 YPS3 30035731 YPS3 Sugiyamaella lignohabitans Yps3p XP_018738509.1 4867879 D 796027 CDS AWJ20_3684 30035732 complement(4869600..4872500) B 1 NC_031674.1 eIF3a subunit of the eukaryotic translation initiation factor 3 (eIF3); subunit of the core complex of eIF3; essential for translation; part of a Prt1p-Rpg1p-Nip1p subcomplex that stimulates binding of mRNA and tRNA(i)Met to ribosomes; involved in translation reinitiation; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0010494 - cytoplasmic stress granule [Evidence IDA] [PMID 19470581]; GO_component: GO:0016282 - eukaryotic 43S preinitiation complex [Evidence IEA]; GO_component: GO:0033290 - eukaryotic 48S preinitiation complex [Evidence IEA]; GO_component: GO:0005852 - eukaryotic translation initiation factor 3 complex [Evidence IEA,IEA]; GO_component: GO:0005852 - eukaryotic translation initiation factor 3 complex [Evidence IPI] [PMID 9660829]; GO_component: GO:0005852 - eukaryotic translation initiation factor 3 complex [Evidence IDA,IPI] [PMID 9671501]; GO_component: GO:0000131 - incipient cellular bud site [Evidence IDA] [PMID 11302750]; GO_component: GO:0043614 - multi-eIF complex [Evidence IDA] [PMID 15838098]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_function: GO:0003743 - translation initiation factor activity [Evidence IEA,IEA]; GO_function: GO:0003743 - translation initiation factor activity [Evidence IDA] [PMID 9671501]; GO_process: GO:0001731 - formation of translation preinitiation complex [Evidence IEA]; GO_process: GO:0006446 - regulation of translational initiation [Evidence IEA]; GO_process: GO:0006412 - translation [Evidence IEA]; GO_process: GO:0002188 - translation reinitiation [Evidence IMP] [PMID 20679478]; GO_process: GO:0006413 - translational initiation [Evidence IEA,IEA]; GO_process: GO:0006413 - translational initiation [Evidence IDA] [PMID 9671501]; Rpg1p 4872500 RPG1 30035732 RPG1 Sugiyamaella lignohabitans Rpg1p XP_018738510.1 4869600 R 796027 CDS AWJ20_3685 30035733 4876090..4880013 B 1 NC_031674.1 uncharacterized protein 4880013 30035733 AWJ20_3685 Sugiyamaella lignohabitans uncharacterized protein XP_018738511.1 4876090 D 796027 CDS AWJ20_3686 30035734 4880426..4881277 B 1 NC_031674.1 uncharacterized protein 4881277 30035734 AWJ20_3686 Sugiyamaella lignohabitans uncharacterized protein XP_018738512.1 4880426 D 796027 CDS AWJ20_3687 30035735 4881855..4884755 B 1 NC_031674.1 GTPase-activating protein (RhoGAP) for Cdc42p and Rho5p; relocalizes from bud neck to cytoplasm upon DNA replication stress; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 14562095]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 22842922]; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 22842922]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_function: GO:0005096 - GTPase activator activity [Evidence IEA]; GO_function: GO:0005100 - Rho GTPase activator activity [Evidence IDA] [PMID 11591390]; GO_process: GO:0035556 - intracellular signal transduction [Evidence IEA]; GO_process: GO:0043547 - positive regulation of GTPase activity [Evidence IEA]; GO_process: GO:0007165 - signal transduction [Evidence IEA]; GO_process: GO:0007264 - small GTPase mediated signal transduction [Evidence IC,IPI] [PMID 11591390]; Rgd2p 4884755 RGD2 30035735 RGD2 Sugiyamaella lignohabitans Rgd2p XP_018738513.1 4881855 D 796027 CDS AWJ20_3688 30035736 complement(4884829..4886490) B 1 NC_031674.1 protein kinase COQ8 4886490 COQ8 30035736 COQ8 Sugiyamaella lignohabitans protein kinase COQ8 XP_018738514.1 4884829 R 796027 CDS AWJ20_3689 30035737 4886679..4888955 B 1 NC_031674.1 RNA helicase in the DEAH-box family; functions in both RNA polymerase I and polymerase II transcript metabolism; catalyzes removal of U2, U5, and U6 snRNPs from the postsplicing lariat-intron ribonucleoprotein complex; required for efficient biogenesis of both small- and large-subunit rRNAs; acts with Sqs1p to promote 20S to 18S rRNA processing catalyzed by endonuclease Nob1p; GO_component: GO:0030686 - 90S preribosome [Evidence IDA] [PMID 12150911]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0071014 - post-mRNA release spliceosomal complex [Evidence IMP] [PMID 11886864]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004004 - ATP-dependent RNA helicase activity [Evidence IMP] [PMID 11886864]; GO_function: GO:0004004 - ATP-dependent RNA helicase activity [Evidence IDA] [PMID 17875666]; GO_function: GO:0008026 - ATP-dependent helicase activity [Evidence IEA]; GO_function: GO:0004386 - helicase activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0008380 - RNA splicing [Evidence IEA]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0000466 - maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 16382143]; GO_process: GO:0000463 - maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 16382143]; GO_process: GO:0030490 - maturation of SSU-rRNA [Evidence IGI] [PMID 19801658]; GO_process: GO:0000462 - maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 16382143]; GO_process: GO:0006364 - rRNA processing [Evidence IMP] [PMID 16227579]; GO_process: GO:0006364 - rRNA processing [Evidence IMP] [PMID 16382144]; GO_process: GO:0042273 - ribosomal large subunit biogenesis [Evidence IMP] [PMID 16382143]; GO_process: GO:0000390 - spliceosomal complex disassembly [Evidence IDA] [PMID 16357217]; GO_process: GO:0000390 - spliceosomal complex disassembly [Evidence IGI] [PMID 17875666]; DEAH-box ATP-dependent RNA helicase PRP43 4888955 PRP43 30035737 PRP43 Sugiyamaella lignohabitans DEAH-box ATP-dependent RNA helicase PRP43 XP_018738515.1 4886679 D 796027 CDS AWJ20_3691 30035740 4890184..4891335 B 1 NC_031674.1 Fe(II)-dependent sulfonate/alpha-ketoglutarate dioxygenase; involved in sulfonate catabolism for use as a sulfur source; contains sequence that resembles a J domain (typified by the E. coli DnaJ protein); induced by sulphur starvation; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0051213 - dioxygenase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0000907 - sulfonate dioxygenase activity [Evidence IDA] [PMID 10482536]; GO_process: GO:0046306 - alkanesulfonate catabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0044273 - sulfur compound catabolic process [Evidence IMP] [PMID 10482536]; Jlp1p 4891335 JLP1 30035740 JLP1 Sugiyamaella lignohabitans Jlp1p XP_018738516.1 4890184 D 796027 CDS AWJ20_3692 30035741 complement(4891559..4892980) B 1 NC_031674.1 Chitin transglycosylase; functions in the transfer of chitin to beta(1-6) and beta(1-3) glucans in the cell wall; similar to and functionally redundant with Crh1; glycosylphosphatidylinositol (GPI)-anchored protein localized to bud neck; GO_component: GO:0031225 - anchored component of membrane [Evidence IEA]; GO_component: GO:0005618 - cell wall [Evidence IEA,IEA,IEA]; GO_component: GO:0000144 - cellular bud neck septin ring [Evidence IDA] [PMID 12045225]; GO_component: GO:0005576 - extracellular region [Evidence IEA]; GO_component: GO:0009277 - fungal-type cell wall [Evidence IDA] [PMID 10383953]; GO_component: GO:0009277 - fungal-type cell wall [Evidence IDA] [PMID 15781460]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016798 - hydrolase activity, acting on glycosyl bonds [Evidence IEA]; GO_function: GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]; GO_function: GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IGI,IMP] [PMID 18694928]; GO_function: GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IDA] [PMID 23919454]; GO_process: GO:0005975 - carbohydrate metabolic process [Evidence IEA]; GO_process: GO:0006037 - cell wall chitin metabolic process [Evidence IGI,IMP] [PMID 18694928]; GO_process: GO:0071555 - cell wall organization [Evidence IEA]; GO_process: GO:0031505 - fungal-type cell wall organization [Evidence IGI,IMP] [PMID 18694928]; Utr2p 4892980 UTR2 30035741 UTR2 Sugiyamaella lignohabitans Utr2p XP_018738517.1 4891559 R 796027 CDS AWJ20_3707 30035758 2548..3243 C 1 NC_031671.1 Ubiquinol-cytochrome-c reductase; a Rieske iron-sulfur protein of the mitochondrial cytochrome bc1 complex; transfers electrons from ubiquinol to cytochrome c1 during respiration; during import, Rip1p is first imported into the mitochondrial matrix where it is processed, acquires its Fe-S cluster, and is folded, then is translocated into the inner membrane by the action of a homo-oligomer of Bcs1p, and finally is delivered by Bcs1p to Complex III for assembly; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005750 - mitochondrial respiratory chain complex III [Evidence IDA] [PMID 10873857]; GO_component: GO:0005750 - mitochondrial respiratory chain complex III [Evidence IDA] [PMID 3036836]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IPI] [PMID 16962558]; GO_component: GO:0070469 - respiratory chain [Evidence IEA]; GO_function: GO:0051537 - 2 iron, 2 sulfur cluster binding [Evidence IEA,IEA]; GO_function: GO:0051536 - iron-sulfur cluster binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0016679 - oxidoreductase activity, acting on diphenols and related substances as donors [Evidence IEA]; GO_function: GO:0008121 - ubiquinol-cytochrome-c reductase activity [Evidence IEA,IEA]; GO_process: GO:0009060 - aerobic respiration [Evidence IMP] [PMID 3036836]; GO_process: GO:1902600 - hydrogen ion transmembrane transport [Evidence IEA,IEA]; GO_process: GO:0006122 - mitochondrial electron transport, ubiquinol to cytochrome c [Evidence IDA] [PMID 3036836]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; ubiquinol--cytochrome-c reductase catalytic subunit RIP1 3243 RIP1 30035758 RIP1 Sugiyamaella lignohabitans ubiquinol--cytochrome-c reductase catalytic subunit RIP1 XP_018733390.1 2548 D 796027 CDS AWJ20_3708 30035759 4851..7451 C 1 NC_031671.1 mitogen-activated protein kinase kinase kinase STE11 7451 STE11 30035759 STE11 Sugiyamaella lignohabitans mitogen-activated protein kinase kinase kinase STE11 XP_018733391.1 4851 D 796027 CDS AWJ20_3709 30035760 complement(7585..9435) C 1 NC_031671.1 uncharacterized protein 9435 30035760 AWJ20_3709 Sugiyamaella lignohabitans uncharacterized protein XP_018733392.1 7585 R 796027 CDS AWJ20_3710 30035762 complement(10076..13597) C 1 NC_031671.1 uncharacterized protein 13597 30035762 AWJ20_3710 Sugiyamaella lignohabitans uncharacterized protein XP_018733393.1 10076 R 796027 CDS AWJ20_3711 30035763 16767..17999 C 1 NC_031671.1 Type I HSP40 co-chaperone; involved in regulation of HSP90 and HSP70 functions; critical for determining cell size at Start as a function of growth rate; involved in protein translocation across membranes; member of the DnaJ family; GO_component: GO:0072380 - TRC complex [Evidence IDA] [PMID 20850366]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 1869583]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 8144572]; GO_component: GO:0048471 - perinuclear region of cytoplasm [Evidence IEA]; GO_component: GO:0048471 - perinuclear region of cytoplasm [Evidence IDA] [PMID 1869583]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0001671 - ATPase activator activity [Evidence IDA] [PMID 1400408]; GO_function: GO:0001671 - ATPase activator activity [Evidence IDA] [PMID 15342786]; GO_function: GO:0031072 - heat shock protein binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0051082 - unfolded protein binding [Evidence IEA]; GO_function: GO:0051082 - unfolded protein binding [Evidence IDA] [PMID 9774392]; GO_process: GO:0006458 - 'de novo' protein folding [Evidence IMP] [PMID 10567418]; GO_process: GO:0030433 - ER-associated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 15252059]; GO_process: GO:0030433 - ER-associated ubiquitin-dependent protein catabolic process [Evidence IGI,IMP] [PMID 15342786]; GO_process: GO:0006457 - protein folding [Evidence IEA]; GO_process: GO:0042026 - protein refolding [Evidence IDA] [PMID 9674429]; GO_process: GO:0045047 - protein targeting to ER [Evidence IMP] [PMID 1473150]; GO_process: GO:0006626 - protein targeting to mitochondrion [Evidence IMP] [PMID 1729605]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0009408 - response to heat [Evidence IEA]; GO_process: GO:0006950 - response to stress [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; type I HSP40 co-chaperone YDJ1 17999 YDJ1 30035763 YDJ1 Sugiyamaella lignohabitans type I HSP40 co-chaperone YDJ1 XP_018733394.1 16767 D 796027 CDS AWJ20_3712 30035764 complement(18485..19930) C 1 NC_031671.1 tyrosine/serine/threonine protein phosphatase MSG5 19930 MSG5 30035764 MSG5 Sugiyamaella lignohabitans tyrosine/serine/threonine protein phosphatase MSG5 XP_018733395.1 18485 R 796027 CDS AWJ20_3713 30035765 complement(23143..23877) C 1 NC_031671.1 Component of the MICOS complex; MICOS (formerly MINOS or MitOS) is a mitochondrial inner membrane complex that extends into the intermembrane space and has a role in the maintenance of crista junctions, inner membrane architecture, and formation of contact sites to the outer membrane; Mic26p is a non-essential component of the complex; GO_component: GO:0061617 - MICOS complex [Evidence IDA] [PMID 21944719]; GO_component: GO:0061617 - MICOS complex [Evidence IDA] [PMID 21987634]; GO_component: GO:0061617 - MICOS complex [Evidence IDA] [PMID 22009199]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0044284 - mitochondrial crista junction [Evidence IDA] [PMID 22009199]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0042407 - cristae formation [Evidence IMP] [PMID 21987634]; GO_process: GO:0042407 - cristae formation [Evidence IMP] [PMID 22009199]; Mic26p 23877 MIC26 30035765 MIC26 Sugiyamaella lignohabitans Mic26p XP_018733396.1 23143 R 796027 CDS AWJ20_3714 30035766 complement(24512..26161) C 1 NC_031671.1 Ferric reductase; reduces siderophore-bound iron prior to uptake by transporters; expression induced by low iron levels; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016021 - integral component of membrane [Evidence ISS] [PMID 9726978]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 11120744]; GO_function: GO:0052851 - ferric-chelate reductase (NADPH) activity [Evidence IEA]; GO_function: GO:0000293 - ferric-chelate reductase activity [Evidence IGI] [PMID 11120744]; GO_function: GO:0000293 - ferric-chelate reductase activity [Evidence ISA] [PMID 9726978]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_process: GO:0006879 - cellular iron ion homeostasis [Evidence IEP,IMP] [PMID 10341420]; GO_process: GO:0006879 - cellular iron ion homeostasis [Evidence IEP,IMP] [PMID 9726978]; GO_process: GO:0006811 - ion transport [Evidence IEA]; GO_process: GO:0055072 - iron ion homeostasis [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0015891 - siderophore transport [Evidence IMP] [PMID 9726978]; Fre3p 26161 FRE3 30035766 FRE3 Sugiyamaella lignohabitans Fre3p XP_018733397.1 24512 R 796027 CDS AWJ20_3715 30035767 28670..29821 C 1 NC_031671.1 uncharacterized protein 29821 30035767 AWJ20_3715 Sugiyamaella lignohabitans uncharacterized protein XP_018733398.1 28670 D 796027 CDS AWJ20_3716 30035768 complement(31853..32113) C 1 NC_031671.1 uncharacterized protein 32113 30035768 AWJ20_3716 Sugiyamaella lignohabitans uncharacterized protein XP_018733399.1 31853 R 796027 CDS AWJ20_3717 30035769 complement(40106..41998) C 1 NC_031671.1 CCR4-NOT core DEDD family RNase subunit POP2 41998 POP2 30035769 POP2 Sugiyamaella lignohabitans CCR4-NOT core DEDD family RNase subunit POP2 XP_018733400.1 40106 R 796027 CDS AWJ20_3718 30035770 46241..49117 C 1 NC_031671.1 mitogen-activated protein kinase kinase kinase SSK2 49117 SSK2 30035770 SSK2 Sugiyamaella lignohabitans mitogen-activated protein kinase kinase kinase SSK2 XP_018733401.1 46241 D 796027 CDS AWJ20_3719 30035771 49255..51228 C 1 NC_031671.1 mitogen-activated protein kinase kinase kinase SSK2 51228 SSK2 30035771 SSK2 Sugiyamaella lignohabitans mitogen-activated protein kinase kinase kinase SSK2 XP_018733402.1 49255 D 796027 CDS AWJ20_3720 30035773 53001..55439 C 1 NC_031671.1 Voltage-gated chloride channel; localized to the golgi, the endosomal system, and plasma membrane; involved in cation homeostasis; highly homologous to vertebrate voltage-gated chloride channels; modulates TBSV model (+) RNA virus replication by regulating copper metabolism; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0005794 - Golgi apparatus [Evidence IDA] [PMID 15710404]; GO_component: GO:0005797 - Golgi medial cisterna [Evidence IDA] [PMID 9614122]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA]; GO_component: GO:0034707 - chloride channel complex [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 17662057]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0005768 - endosome [Evidence IEA]; GO_component: GO:0005768 - endosome [Evidence IDA] [PMID 15710404]; GO_component: GO:0010008 - endosome membrane [Evidence IEA]; GO_component: GO:0000324 - fungal-type vacuole [Evidence IDA] [PMID 17662057]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 17662057]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0030554 - adenyl nucleotide binding [Evidence IEA]; GO_function: GO:0005254 - chloride channel activity [Evidence IEA]; GO_function: GO:0005216 - ion channel activity [Evidence IEA]; GO_function: GO:0005247 - voltage-gated chloride channel activity [Evidence IEA]; GO_function: GO:0005247 - voltage-gated chloride channel activity [Evidence IDA] [PMID 12074596]; GO_process: GO:0006878 - cellular copper ion homeostasis [Evidence IMP] [PMID 9520490]; GO_process: GO:0006878 - cellular copper ion homeostasis [Evidence IMP] [PMID 9614122]; GO_process: GO:0006879 - cellular iron ion homeostasis [Evidence IMP] [PMID 9520490]; GO_process: GO:1902476 - chloride transmembrane transport [Evidence IEA]; GO_process: GO:0006821 - chloride transport [Evidence IEA,IEA]; GO_process: GO:0034220 - ion transmembrane transport [Evidence IEA]; GO_process: GO:0006811 - ion transport [Evidence IEA]; GO_process: GO:0044070 - regulation of anion transport [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Gef1p 55439 GEF1 30035773 GEF1 Sugiyamaella lignohabitans Gef1p XP_018733403.1 53001 D 796027 CDS AWJ20_3721 30035774 complement(56054..57070) C 1 NC_031671.1 uncharacterized protein 57070 30035774 AWJ20_3721 Sugiyamaella lignohabitans uncharacterized protein XP_018733404.1 56054 R 796027 CDS AWJ20_3722 30035775 58198..59196 C 1 NC_031671.1 Protein required for full activation of the general stress response; required with binding partner Psr1p, possibly through Msn2p dephosphorylation; regulates growth during the diauxic shift; negative regulator of G1 cyclin expression; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0019211 - phosphatase activator activity [Evidence IMP] [PMID 12090248]; GO_process: GO:0007015 - actin filament organization [Evidence IMP] [PMID 15020461]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0006897 - endocytosis [Evidence IMP] [PMID 15020461]; GO_process: GO:0000422 - mitochondrion degradation [Evidence IMP] [PMID 21429936]; GO_process: GO:0040008 - regulation of growth [Evidence IMP] [PMID 2204680]; GO_process: GO:0009408 - response to heat [Evidence IMP] [PMID 12090248]; GO_process: GO:0009651 - response to salt stress [Evidence IMP] [PMID 12090248]; Whi2p 59196 WHI2 30035775 WHI2 Sugiyamaella lignohabitans Whi2p XP_018733405.1 58198 D 796027 CDS AWJ20_3723 30035776 complement(59408..60247) C 1 NC_031671.1 O-methyltransferase; catalyzes two different O-methylation steps in ubiquinone (Coenzyme Q) biosynthesis; component of a mitochondrial ubiquinone-synthesizing complex; phosphoprotein; GO_component: GO:0019898 - extrinsic component of membrane [Evidence IDA] [PMID 10419476]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IDA] [PMID 10419476]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 10760477]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0008425 - 2-polyprenyl-6-methoxy-1,4-benzoquinone methyltransferase activity [Evidence IEA]; GO_function: GO:0061543 - 3-demethylubiquinone-6 3-O-methyltransferase activity [Evidence IMP] [PMID 10419476]; GO_function: GO:0008689 - 3-demethylubiquinone-9 3-O-methyltransferase activity [Evidence IEA]; GO_function: GO:0004395 - hexaprenyldihydroxybenzoate methyltransferase activity [Evidence IEA]; GO_function: GO:0004395 - hexaprenyldihydroxybenzoate methyltransferase activity [Evidence IMP] [PMID 1885593]; GO_function: GO:0008168 - methyltransferase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0032259 - methylation [Evidence IEA]; GO_process: GO:0006744 - ubiquinone biosynthetic process [Evidence IEA,IEA,IEA]; GO_process: GO:0006744 - ubiquinone biosynthetic process [Evidence IDA] [PMID 10419476]; GO_process: GO:0006744 - ubiquinone biosynthetic process [Evidence IMP] [PMID 1885593]; hexaprenyldihydroxybenzoate methyltransferase 60247 COQ3 30035776 COQ3 Sugiyamaella lignohabitans hexaprenyldihydroxybenzoate methyltransferase XP_018733406.1 59408 R 796027 CDS AWJ20_3724 30035777 complement(61623..61943) C 1 NC_031671.1 uncharacterized protein 61943 30035777 AWJ20_3724 Sugiyamaella lignohabitans uncharacterized protein XP_018733407.1 61623 R 796027 CDS AWJ20_3725 30035778 complement(62521..65175) C 1 NC_031671.1 dolichyl-phosphate-mannose-protein mannosyltransferase PMT1 65175 PMT1 30035778 PMT1 Sugiyamaella lignohabitans dolichyl-phosphate-mannose-protein mannosyltransferase PMT1 XP_018733408.1 62521 R 796027 CDS AWJ20_3726 30035779 70237..71922 C 1 NC_031671.1 Putative transporter in the major facilitator superfamily; member of the 12-spanner drug:H(+) antiporter DHA1 family; mutations in membrane-spanning domains permit cation and histidinol uptake; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005886 - plasma membrane [Evidence ISS] [PMID 8955402]; GO_function: GO:0015665 - alcohol transmembrane transporter activity [Evidence IMP] [PMID 2405251]; GO_function: GO:0022890 - inorganic cation transmembrane transporter activity [Evidence IMP] [PMID 8955402]; GO_process: GO:0006812 - cation transport [Evidence IMP] [PMID 8955402]; GO_process: GO:0015850 - organic hydroxy compound transport [Evidence IMP] [PMID 2405251]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Hol1p 71922 HOL1 30035779 HOL1 Sugiyamaella lignohabitans Hol1p XP_018733409.1 70237 D 796027 CDS AWJ20_3727 30035780 75187..76836 C 1 NC_031671.1 Subunit of a Golgi mannosyltransferase complex; complex mediates elongation of the polysaccharide mannan backbone; membrane protein of the mannosyltransferase family; other members of the complex are Anp1p, Mnn9p, Mnn11p, and Hoc1p; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA,IEA]; GO_component: GO:0000136 - alpha-1,6-mannosyltransferase complex [Evidence IDA] [PMID 10037752]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0000009 - alpha-1,6-mannosyltransferase activity [Evidence IDA] [PMID 10037752]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA]; GO_function: GO:0016758 - transferase activity, transferring hexosyl groups [Evidence IEA]; GO_process: GO:0000917 - barrier septum assembly [Evidence IMP] [PMID 16034811]; GO_process: GO:0000032 - cell wall mannoprotein biosynthetic process [Evidence IMP] [PMID 10037752]; GO_process: GO:0006487 - protein N-linked glycosylation [Evidence IMP] [PMID 23210626]; GO_process: GO:0006487 - protein N-linked glycosylation [Evidence IMP] [PMID 8991513]; Mnn10p 76836 MNN10 30035780 MNN10 Sugiyamaella lignohabitans Mnn10p XP_018733410.1 75187 D 796027 CDS AWJ20_3728 30035781 78829..81855 C 1 NC_031671.1 serine/threonine protein kinase FPK1 81855 FPK1 30035781 FPK1 Sugiyamaella lignohabitans serine/threonine protein kinase FPK1 XP_018733411.1 78829 D 796027 CDS AWJ20_3729 30035782 complement(81989..83152) C 1 NC_031671.1 Protein involved in fluoride export; nearly identical to FEX1, and deletion of both proteins results in a large increase in fluoride sensitivity compared with the single mutant; contains two FEX domains connected by a linker; part of a widespread family of conserved fluoride export proteins; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; Fex2p 83152 FEX2 30035782 FEX2 Sugiyamaella lignohabitans Fex2p XP_018733412.1 81989 R 796027 CDS AWJ20_3730 30035784 84401..84823 C 1 NC_031671.1 Alpha subunit of translation initiation factor eIF2B; guanine-nucleotide exchange factor for eIF2; activity subsequently regulated by phosphorylated eIF2; positive regulator of GCN4 expression; assembles into filaments with Gcd2p, Gcd6p, Gcd7p, and Sui2p as cells approach stationary phase and under cytosolic acidification and starvation conditions; GO_component: GO:0005851 - eukaryotic translation initiation factor 2B complex [Evidence IMP] [PMID 8099443]; GO_component: GO:0005851 - eukaryotic translation initiation factor 2B complex [Evidence IDA] [PMID 8336705]; GO_component: GO:0005851 - eukaryotic translation initiation factor 2B complex [Evidence IDA,IPI] [PMID 8506384]; GO_component: GO:0032045 - guanyl-nucleotide exchange factor complex [Evidence IDA] [PMID 8506384]; GO_function: GO:0030234 - enzyme regulator activity [Evidence IMP] [PMID 8099443]; GO_function: GO:0030234 - enzyme regulator activity [Evidence IGI,IMP,IPI] [PMID 8887689]; GO_function: GO:0030234 - enzyme regulator activity [Evidence IMP] [PMID 9032257]; GO_function: GO:0005085 - guanyl-nucleotide exchange factor activity [Evidence IDA] [PMID 8506384]; GO_function: GO:0003743 - translation initiation factor activity [Evidence IEA]; GO_function: GO:0003743 - translation initiation factor activity [Evidence IMP] [PMID 8099443]; GO_function: GO:0003743 - translation initiation factor activity [Evidence IDA] [PMID 8336705]; GO_process: GO:0044237 - cellular metabolic process [Evidence IEA]; GO_process: GO:0006417 - regulation of translation [Evidence IEA]; GO_process: GO:0006446 - regulation of translational initiation [Evidence IMP] [PMID 8099443]; GO_process: GO:0006446 - regulation of translational initiation [Evidence IDA] [PMID 8506384]; GO_process: GO:0006446 - regulation of translational initiation [Evidence IGI,IPI] [PMID 8887689]; GO_process: GO:0006446 - regulation of translational initiation [Evidence IMP] [PMID 9032257]; GO_process: GO:0006412 - translation [Evidence IEA]; GO_process: GO:0006413 - translational initiation [Evidence IEA]; translation initiation factor eIF2B subunit alpha 84823 GCN3 30035784 GCN3 Sugiyamaella lignohabitans translation initiation factor eIF2B subunit alpha XP_018733413.1 84401 D 796027 CDS AWJ20_3731 30035785 complement(85030..85836) C 1 NC_031671.1 RNA polymerase III subunit C37; GO_component: GO:0005666 - DNA-directed RNA polymerase III complex [Evidence IDA] [PMID 10611227]; GO_component: GO:0005666 - DNA-directed RNA polymerase III complex [Evidence IDA] [PMID 3905793]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_function: GO:0003899 - DNA-directed RNA polymerase activity [Evidence IEA,IEA]; GO_function: GO:0001056 - RNA polymerase III activity [Evidence IDA] [PMID 3905793]; GO_process: GO:0042797 - tRNA transcription from RNA polymerase III promoter [Evidence IDA] [PMID 3905793]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Rpc37p 85836 RPC37 30035785 RPC37 Sugiyamaella lignohabitans Rpc37p XP_018733414.1 85030 R 796027 CDS AWJ20_3732 30035786 86579..88897 C 1 NC_031671.1 Putative ATP-dependent RNA helicase of the DEAD-box family; involved in ribosomal biogenesis; required at post-transcriptional step for efficient retrotransposition; essential for growth under anaerobic conditions; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 9582098]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004004 - ATP-dependent RNA helicase activity [Evidence ISS] [PMID 10322435]; GO_function: GO:0008026 - ATP-dependent helicase activity [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0004386 - helicase activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0000463 - maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 9582098]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; Dbp7p 88897 DBP7 30035786 DBP7 Sugiyamaella lignohabitans Dbp7p XP_018733415.1 86579 D 796027 CDS AWJ20_3733 30035787 93699..95492 C 1 NC_031671.1 uncharacterized protein 95492 30035787 AWJ20_3733 Sugiyamaella lignohabitans uncharacterized protein XP_018733416.1 93699 D 796027 CDS AWJ20_3734 30035788 98087..100627 C 1 NC_031671.1 uncharacterized protein 100627 30035788 AWJ20_3734 Sugiyamaella lignohabitans uncharacterized protein XP_018733417.1 98087 D 796027 CDS AWJ20_3735 30035789 complement(101761..102183) C 1 NC_031671.1 Histone H3; core histone protein required for chromatin assembly, part of heterochromatin-mediated telomeric and HM silencing; one of two identical histone H3 proteins (see HHT2); regulated by acetylation, methylation, and phosphorylation; H3K14 acetylation plays an important role in the unfolding of strongly positioned nucleosomes during repair of UV damage; GO_component: GO:0043505 - centromere-specific nucleosome [Evidence IDA] [PMID 22693454]; GO_component: GO:0005694 - chromosome [Evidence IEA,IEA]; GO_component: GO:0000788 - nuclear nucleosome [Evidence TAS] [PMID 2275823]; GO_component: GO:0000786 - nucleosome [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11914276]; GO_component: GO:0031298 - replication fork protection complex [Evidence IDA] [PMID 16531994]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0003677 - DNA binding [Evidence TAS] [PMID 2275823]; GO_function: GO:0046982 - protein heterodimerization activity [Evidence IEA]; GO_process: GO:0006281 - DNA repair [Evidence IEA]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0006333 - chromatin assembly or disassembly [Evidence TAS] [PMID 2275823]; GO_process: GO:0070911 - global genome nucleotide-excision repair [Evidence IMP] [PMID 21460225]; GO_process: GO:0007094 - mitotic spindle assembly checkpoint [Evidence IGI] [PMID 19917722]; GO_process: GO:0006334 - nucleosome assembly [Evidence IEA]; GO_process: GO:0009303 - rRNA transcription [Evidence IMP] [PMID 16002464]; GO_process: GO:0043935 - sexual sporulation resulting in formation of a cellular spore [Evidence IMP] [PMID 20713519]; histone H3 102183 HHT2 30035789 HHT2 Sugiyamaella lignohabitans histone H3 XP_018733418.1 101761 R 796027 CDS AWJ20_3736 30035790 103937..104248 C 1 NC_031671.1 Histone H4; core histone protein required for chromatin assembly and chromosome function; one of two identical histone proteins (see also HHF2); contributes to telomeric silencing; N-terminal domain involved in maintaining genomic integrity; GO_component: GO:0005694 - chromosome [Evidence IEA,IEA]; GO_component: GO:0000788 - nuclear nucleosome [Evidence TAS] [PMID 2275823]; GO_component: GO:0000786 - nucleosome [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0031298 - replication fork protection complex [Evidence IDA] [PMID 16531994]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0003677 - DNA binding [Evidence TAS] [PMID 2275823]; GO_function: GO:0046982 - protein heterodimerization activity [Evidence IEA]; GO_process: GO:0006333 - chromatin assembly or disassembly [Evidence TAS] [PMID 2275823]; GO_process: GO:0034729 - histone H3-K79 methylation [Evidence IMP] [PMID 18158898]; GO_process: GO:0006334 - nucleosome assembly [Evidence IEA]; GO_process: GO:0043935 - sexual sporulation resulting in formation of a cellular spore [Evidence IMP] [PMID 20713519]; GO_process: GO:0061587 - transfer RNA gene-mediated silencing [Evidence IMP] [PMID 23707796]; histone H4 104248 HHF2 30035790 HHF2 Sugiyamaella lignohabitans histone H4 XP_018733419.1 103937 D 796027 CDS AWJ20_3737 30035791 104583..105596 C 1 NC_031671.1 Ribose-5-phosphate ketol-isomerase; catalyzes the interconversion of ribose 5-phosphate and ribulose 5-phosphate in the pentose phosphate pathway; participates in pyridoxine biosynthesis; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0016853 - isomerase activity [Evidence IEA]; GO_function: GO:0004751 - ribose-5-phosphate isomerase activity [Evidence IEA,IEA]; GO_function: GO:0004751 - ribose-5-phosphate isomerase activity [Evidence IMP,ISS] [PMID 8929392]; GO_process: GO:0006098 - pentose-phosphate shunt [Evidence IEA]; GO_process: GO:0006098 - pentose-phosphate shunt [Evidence IGI] [PMID 8929392]; GO_process: GO:0009052 - pentose-phosphate shunt, non-oxidative branch [Evidence IEA]; GO_process: GO:0008615 - pyridoxine biosynthetic process [Evidence IMP] [PMID 14690456]; ribose-5-phosphate isomerase RKI1 105596 RKI1 30035791 RKI1 Sugiyamaella lignohabitans ribose-5-phosphate isomerase RKI1 XP_018733420.1 104583 D 796027 CDS AWJ20_3738 30035792 complement(108260..109582) C 1 NC_031671.1 Mu1-like medium subunit of the AP-1 complex; binds clathrin; involved in clathrin-dependent Golgi protein sorting; the AP-1 complex is the clathrin-associated protein complex; GO_component: GO:0030121 - AP-1 adaptor complex [Evidence IPI,ISS] [PMID 10564262]; GO_component: GO:0030131 - clathrin adaptor complex [Evidence IEA]; GO_component: GO:0030665 - clathrin-coated vesicle membrane [Evidence IEA]; GO_component: GO:0005905 - coated pit [Evidence IEA,IEA]; GO_component: GO:0016023 - cytoplasmic membrane-bounded vesicle [Evidence IEA]; GO_component: GO:0031410 - cytoplasmic vesicle [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0030276 - clathrin binding [Evidence IPI,ISS] [PMID 10564262]; GO_process: GO:0006896 - Golgi to vacuole transport [Evidence IMP] [PMID 17003107]; GO_process: GO:0006886 - intracellular protein transport [Evidence IEA]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IEA]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IPI,ISS] [PMID 10564262]; Apm1p 109582 APM1 30035792 APM1 Sugiyamaella lignohabitans Apm1p XP_018733421.1 108260 R 796027 CDS AWJ20_3739 30035793 108522..108920 C 1 NC_031671.1 uncharacterized protein 108920 30035793 AWJ20_3739 Sugiyamaella lignohabitans uncharacterized protein XP_018733422.1 108522 D 796027 CDS AWJ20_3740 30035795 complement(111418..113187) C 1 NC_031671.1 uncharacterized protein 113187 30035795 AWJ20_3740 Sugiyamaella lignohabitans uncharacterized protein XP_018733423.1 111418 R 796027 CDS AWJ20_3741 30035796 115364..117727 C 1 NC_031671.1 Protein with a role in 5'-end processing of mitochondrial RNAs; located in the mitochondrial membrane; GO_component: GO:0005740 - mitochondrial envelope [Evidence IDA] [PMID 9111353]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0000964 - mitochondrial RNA 5'-end processing [Evidence IMP] [PMID 18086665]; GO_process: GO:0000964 - mitochondrial RNA 5'-end processing [Evidence IMP] [PMID 9111353]; Pet127p 117727 PET127 30035796 PET127 Sugiyamaella lignohabitans Pet127p XP_018733424.1 115364 D 796027 CDS AWJ20_3742 30035797 complement(117861..118880) C 1 NC_031671.1 Putative plasma membrane permease; proposed to be involved in carboxylic acid uptake and repressed by thiamine; substrate of Dbf2p/Mob1p kinase; transcription is altered if mitochondrial dysfunction occurs; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 16850348]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISS] [PMID 10869563]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_function: GO:0005215 - transporter activity [Evidence ISS] [PMID 10869563]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence ISS] [PMID 10869563]; Thi73p 118880 THI73 30035797 THI73 Sugiyamaella lignohabitans Thi73p XP_018733425.1 117861 R 796027 CDS AWJ20_3743 30035798 complement(120325..120753) C 1 NC_031671.1 Histone H1, linker histone with roles in meiosis and sporulation; decreasing levels early in sporulation may promote meiosis, and increasing levels during sporulation facilitate compaction of spore chromatin; binds to promoters and within genes in mature spores; may be recruited by Ume6p to promoter regions, contributing to transcriptional repression outside of meiosis; suppresses DNA repair involving homologous recombination; GO_component: GO:0005694 - chromosome [Evidence IEA,IEA]; GO_component: GO:0000790 - nuclear chromatin [Evidence IDA] [PMID 22586276]; GO_component: GO:0000788 - nuclear nucleosome [Evidence IPI] [PMID 11574687]; GO_component: GO:0000786 - nucleosome [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11914276]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9046096]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0003677 - DNA binding [Evidence IPI] [PMID 11574687]; GO_process: GO:0030261 - chromosome condensation [Evidence IMP] [PMID 22586276]; GO_process: GO:0045910 - negative regulation of DNA recombination [Evidence IGI,IMP] [PMID 12820979]; GO_process: GO:0031936 - negative regulation of chromatin silencing [Evidence IGI] [PMID 19017647]; GO_process: GO:0006334 - nucleosome assembly [Evidence IEA]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IMP] [PMID 11574687]; histone H1 120753 HHO1 30035798 HHO1 Sugiyamaella lignohabitans histone H1 XP_018733426.1 120325 R 796027 CDS AWJ20_3744 30035799 126947..128770 C 1 NC_031671.1 Putative transcription factor; has homolog in Kluyveromyces lactis; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0000981 - sequence-specific DNA binding RNA polymerase II transcription factor activity [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence IEA]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA,IEA]; GO_process: GO:0030435 - sporulation resulting in formation of a cellular spore [Evidence IEA]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA,IEA]; Sef1p 128770 SEF1 30035799 SEF1 Sugiyamaella lignohabitans Sef1p XP_018733427.1 126947 D 796027 CDS AWJ20_3745 30035800 129030..129977 C 1 NC_031671.1 Histidinolphosphatase; catalyzes the eighth step in histidine biosynthesis; mutations cause histidine auxotrophy and sensitivity to Cu, Co, and Ni salts; transcription is regulated by general amino acid control; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0004401 - histidinol-phosphatase activity [Evidence IEA,IEA]; GO_function: GO:0004401 - histidinol-phosphatase activity [Evidence IMP] [PMID 14190241]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0016311 - dephosphorylation [Evidence IEA,IEA]; GO_process: GO:0000105 - histidine biosynthetic process [Evidence IEA,IEA,IEA]; GO_process: GO:0000105 - histidine biosynthetic process [Evidence IMP] [PMID 14190241]; histidinol-phosphatase 129977 HIS2 30035800 HIS2 Sugiyamaella lignohabitans histidinol-phosphatase XP_018733428.1 129030 D 796027 CDS AWJ20_3746 30035801 complement(130088..131074) C 1 NC_031671.1 putative ribonuclease H1 131074 30035801 AWJ20_3746 Sugiyamaella lignohabitans putative ribonuclease H1 XP_018733429.1 130088 R 796027 CDS AWJ20_3747 30035802 complement(132003..134147) C 1 NC_031671.1 Prolyl-tRNA synthetase; N-terminal domain shows weak homology to prokaryotic posttransfer editing domain, but does not possess posttransfer editing activity; may interact with ribosomes, based on co-purification experiments; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IDA] [PMID 16702403]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0002161 - aminoacyl-tRNA editing activity [Evidence IEA]; GO_function: GO:0004812 - aminoacyl-tRNA ligase activity [Evidence IEA,IEA]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_function: GO:0004827 - proline-tRNA ligase activity [Evidence IEA,IEA]; GO_function: GO:0004827 - proline-tRNA ligase activity [Evidence IDA] [PMID 16864571]; GO_process: GO:0006433 - prolyl-tRNA aminoacylation [Evidence IEA]; GO_process: GO:0006433 - prolyl-tRNA aminoacylation [Evidence IDA] [PMID 16864571]; GO_process: GO:0006450 - regulation of translational fidelity [Evidence IEA]; GO_process: GO:0006418 - tRNA aminoacylation for protein translation [Evidence IEA]; GO_process: GO:0006412 - translation [Evidence IEA]; proline--tRNA ligase 134147 30035802 AWJ20_3747 Sugiyamaella lignohabitans proline--tRNA ligase XP_018733430.1 132003 R 796027 CDS AWJ20_3748 30035803 134668..136368 C 1 NC_031671.1 Cytosolic asparaginyl-tRNA synthetase; required for protein synthesis, catalyzes the specific attachment of asparagine to its cognate tRNA; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence IC] [PMID 9605503]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004812 - aminoacyl-tRNA ligase activity [Evidence IEA,IEA]; GO_function: GO:0004816 - asparagine-tRNA ligase activity [Evidence IEA,IEA]; GO_function: GO:0004816 - asparagine-tRNA ligase activity [Evidence IDA,ISS] [PMID 9605503]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_process: GO:0006421 - asparaginyl-tRNA aminoacylation [Evidence IEA]; GO_process: GO:0006421 - asparaginyl-tRNA aminoacylation [Evidence IDA,IGI,ISS] [PMID 9605503]; GO_process: GO:0006418 - tRNA aminoacylation for protein translation [Evidence IEA]; GO_process: GO:0006412 - translation [Evidence IEA]; asparagine--tRNA ligase DED81 136368 DED81 30035803 DED81 Sugiyamaella lignohabitans asparagine--tRNA ligase DED81 XP_018733431.1 134668 D 796027 CDS AWJ20_3749 30035804 complement(137503..138333) C 1 NC_031671.1 Peroxisomal 2,4-dienoyl-CoA reductase; auxiliary enzyme of fatty acid beta-oxidation; homodimeric enzyme required for growth and sporulation on petroselineate medium; expression induced during late sporulation and in the presence of oleate; GO_component: GO:0005782 - peroxisomal matrix [Evidence IDA] [PMID 9268358]; GO_component: GO:0005777 - peroxisome [Evidence IEA,IEA]; GO_function: GO:0008670 - 2,4-dienoyl-CoA reductase (NADPH) activity [Evidence IEA]; GO_function: GO:0008670 - 2,4-dienoyl-CoA reductase (NADPH) activity [Evidence IDA,ISS] [PMID 9268358]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_process: GO:0030437 - ascospore formation [Evidence IEP,IMP] [PMID 7969036]; GO_process: GO:0009062 - fatty acid catabolic process [Evidence IDA,ISS] [PMID 9268358]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; GO_process: GO:0030435 - sporulation resulting in formation of a cellular spore [Evidence IEA]; Sps19p 138333 SPS19 30035804 SPS19 Sugiyamaella lignohabitans Sps19p XP_018733432.1 137503 R 796027 CDS AWJ20_3750 30035806 complement(143207..144166) C 1 NC_031671.1 uncharacterized protein 144166 30035806 AWJ20_3750 Sugiyamaella lignohabitans uncharacterized protein XP_018733433.1 143207 R 796027 CDS AWJ20_3751 30035807 complement(144714..145349) C 1 NC_031671.1 Alpha 6 subunit of the 20S proteasome; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IC] [PMID 9087403]; GO_component: GO:0042175 - nuclear outer membrane-endoplasmic reticulum membrane network [Evidence IC] [PMID 9087403]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IC] [PMID 9087403]; GO_component: GO:0000502 - proteasome complex [Evidence IEA]; GO_component: GO:0005839 - proteasome core complex [Evidence IEA]; GO_component: GO:0019773 - proteasome core complex, alpha-subunit complex [Evidence IEA]; GO_component: GO:0019773 - proteasome core complex, alpha-subunit complex [Evidence IDA] [PMID 9087403]; GO_component: GO:0034515 - proteasome storage granule [Evidence IDA] [PMID 18504300]; GO_function: GO:0004175 - endopeptidase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_function: GO:0004298 - threonine-type endopeptidase activity [Evidence IEA,IEA]; GO_process: GO:0010499 - proteasomal ubiquitin-independent protein catabolic process [Evidence IDA] [PMID 19162040]; GO_process: GO:0043161 - proteasome-mediated ubiquitin-dependent protein catabolic process [Evidence IDA] [PMID 11545745]; GO_process: GO:0043161 - proteasome-mediated ubiquitin-dependent protein catabolic process [Evidence IDA] [PMID 19029916]; GO_process: GO:0006508 - proteolysis [Evidence IEA]; GO_process: GO:0051603 - proteolysis involved in cellular protein catabolic process [Evidence IEA]; GO_process: GO:0006511 - ubiquitin-dependent protein catabolic process [Evidence IEA]; proteasome core particle subunit alpha 6 145349 PRE5 30035807 PRE5 Sugiyamaella lignohabitans proteasome core particle subunit alpha 6 XP_018733434.1 144714 R 796027 CDS AWJ20_3752 30035808 complement(147370..148341) C 1 NC_031671.1 Protein localized to COPII-coated vesicles; involved in vesicle formation and incorporation of specific secretory cargo; protein abundance increases in response to DNA replication stress; GO_component: GO:0030134 - ER to Golgi transport vesicle [Evidence IDA] [PMID 11157978]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006888 - ER to Golgi vesicle-mediated transport [Evidence IPI] [PMID 11157978]; Erv29p 148341 ERV29 30035808 ERV29 Sugiyamaella lignohabitans Erv29p XP_018733435.1 147370 R 796027 CDS AWJ20_3753 30035809 149580..152039 C 1 NC_031671.1 uncharacterized protein 152039 30035809 AWJ20_3753 Sugiyamaella lignohabitans uncharacterized protein XP_018733436.1 149580 D 796027 CDS AWJ20_3754 30035810 join(153893..154414,154870..154890) C 1 NC_031671.1 Ubiquitin; becomes conjugated to proteins, marking them for selective degradation via the ubiquitin-26S proteasome system; essential for the cellular stress response; encoded as a polyubiquitin precursor comprised of 5 head-to-tail repeats; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IC] [PMID 8982460]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0043008 - ATP-dependent protein binding [Evidence TAS] [PMID 8982460]; GO_function: GO:0031386 - protein tag [Evidence ISS] [PMID 3038523]; GO_process: GO:0006281 - DNA repair [Evidence IEA]; GO_process: GO:0030437 - ascospore formation [Evidence TAS] [PMID 8982460]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0016579 - protein deubiquitination [Evidence TAS] [PMID 8982460]; GO_process: GO:0006513 - protein monoubiquitination [Evidence TAS] [PMID 8982460]; GO_process: GO:0000209 - protein polyubiquitination [Evidence TAS] [PMID 8982460]; GO_process: GO:0016567 - protein ubiquitination [Evidence IMP] [PMID 8035826]; ubiquitin 154890 UBI4 30035810 UBI4 Sugiyamaella lignohabitans ubiquitin XP_018733437.1 153893 D 796027 CDS AWJ20_3755 30035811 159786..161393 C 1 NC_031671.1 Inositol-3-phosphate synthase; involved in synthesis of inositol phosphates and inositol-containing phospholipids; transcription is coregulated with other phospholipid biosynthetic genes by Ino2p and Ino4p, which bind the UASINO DNA element; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0004512 - inositol-3-phosphate synthase activity [Evidence IEA,IEA]; GO_function: GO:0004512 - inositol-3-phosphate synthase activity [Evidence IMP] [PMID 7016881]; GO_function: GO:0016853 - isomerase activity [Evidence IEA]; GO_process: GO:0006021 - inositol biosynthetic process [Evidence IEA,IEA,IEA]; GO_process: GO:0006021 - inositol biosynthetic process [Evidence IMP] [PMID 7016881]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0008654 - phospholipid biosynthetic process [Evidence IEA,IEA]; inositol-3-phosphate synthase INO1 161393 INO1 30035811 INO1 Sugiyamaella lignohabitans inositol-3-phosphate synthase INO1 XP_018733438.1 159786 D 796027 CDS AWJ20_3756 30035812 complement(160002..160460) C 1 NC_031671.1 myo-inositol-1-phosphate synthase 160460 30035812 AWJ20_3756 Sugiyamaella lignohabitans myo-inositol-1-phosphate synthase XP_018733439.1 160002 R 796027 CDS AWJ20_3757 30035813 complement(162215..164302) C 1 NC_031671.1 Kinesin-related motor protein involved in mitotic spindle positioning; stabilizes microtubules by targeting Bik1p to the plus end; Kip2p levels are controlled during the cell cycle; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005881 - cytoplasmic microtubule [Evidence IDA] [PMID 9693366]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA,IEA]; GO_component: GO:0005871 - kinesin complex [Evidence IEA]; GO_component: GO:0005871 - kinesin complex [Evidence TAS] [PMID 9153752]; GO_component: GO:0005874 - microtubule [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0008017 - microtubule binding [Evidence IEA]; GO_function: GO:0003777 - microtubule motor activity [Evidence IEA]; GO_function: GO:0003777 - microtubule motor activity [Evidence TAS] [PMID 9153752]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0007018 - microtubule-based movement [Evidence IEA]; GO_process: GO:0007067 - mitotic nuclear division [Evidence IEA]; GO_process: GO:0007026 - negative regulation of microtubule depolymerization [Evidence IMP] [PMID 9693366]; GO_process: GO:0030473 - nuclear migration along microtubule [Evidence IMP] [PMID 9693366]; Kip2p 164302 KIP2 30035813 KIP2 Sugiyamaella lignohabitans Kip2p XP_018733440.1 162215 R 796027 CDS AWJ20_3758 30035814 join(165741..165758,165913..166356) C 1 NC_031671.1 Minor isoform of tropomyosin; binds to and stabilizes actin cables and filaments, which direct polarized cell growth and the distribution of several organelles; appears to have distinct and also overlapping functions with Tpm1p; TPM2 has a paralog, TPM1, that arose from the whole genome duplication; GO_component: GO:0032432 - actin filament bundle [Evidence IDA] [PMID 9864365]; GO_component: GO:0000142 - cellular bud neck contractile ring [Evidence IDA] [PMID 9864365]; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA,IEA]; GO_function: GO:0003786 - actin lateral binding [Evidence TAS] [PMID 9153752]; GO_process: GO:0051017 - actin filament bundle assembly [Evidence IGI] [PMID 9864365]; GO_process: GO:0007015 - actin filament organization [Evidence TAS] [PMID 10652251]; GO_process: GO:0008154 - actin polymerization or depolymerization [Evidence TAS] [PMID 10652251]; GO_process: GO:0007118 - budding cell apical bud growth [Evidence TAS] [PMID 10652251]; GO_process: GO:0007119 - budding cell isotropic bud growth [Evidence TAS] [PMID 10652251]; GO_process: GO:0030010 - establishment of cell polarity [Evidence TAS] [PMID 10652251]; GO_process: GO:0006887 - exocytosis [Evidence TAS] [PMID 10652251]; GO_process: GO:0008298 - intracellular mRNA localization [Evidence TAS] [PMID 10652251]; GO_process: GO:0000001 - mitochondrion inheritance [Evidence TAS] [PMID 10652251]; GO_process: GO:0000011 - vacuole inheritance [Evidence TAS] [PMID 10652251]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence TAS] [PMID 10652251]; tropomyosin TPM2 166356 TPM2 30035814 TPM2 Sugiyamaella lignohabitans tropomyosin TPM2 XP_018733441.1 165741 D 796027 CDS AWJ20_3759 30035815 166994..168097 C 1 NC_031671.1 uncharacterized protein 168097 30035815 AWJ20_3759 Sugiyamaella lignohabitans uncharacterized protein XP_018733442.1 166994 D 796027 CDS AWJ20_3760 30035817 173456..179983 C 1 NC_031671.1 Acetyl-CoA carboxylase, biotin containing enzyme; catalyzes carboxylation of cytosolic acetyl-CoA to form malonyl-CoA and regulates histone acetylation by regulating the availablity of acetyl-CoA; required for de novo biosynthesis of long-chain fatty acids; ACC1 has a paralog, HFA1, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IDA] [PMID 9438137]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0003989 - acetyl-CoA carboxylase activity [Evidence IEA,IEA]; GO_function: GO:0003989 - acetyl-CoA carboxylase activity [Evidence IMP,ISS] [PMID 8098706]; GO_function: GO:0004075 - biotin carboxylase activity [Evidence IEA,IEA]; GO_function: GO:0004075 - biotin carboxylase activity [Evidence ISS] [PMID 1350093]; GO_function: GO:0004075 - biotin carboxylase activity [Evidence IMP] [PMID 6108218]; GO_function: GO:0003824 - catalytic activity [Evidence IEA,IEA]; GO_function: GO:0016874 - ligase activity [Evidence IEA,IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA,IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006633 - fatty acid biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0006631 - fatty acid metabolic process [Evidence IEA]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0042759 - long-chain fatty acid biosynthetic process [Evidence IMP] [PMID 6103540]; GO_process: GO:2001295 - malonyl-CoA biosynthetic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA,IEA]; GO_process: GO:0006998 - nuclear envelope organization [Evidence TAS] [PMID 9442897]; GO_process: GO:0006606 - protein import into nucleus [Evidence IMP] [PMID 12730220]; acetyl-CoA carboxylase ACC1 179983 ACC1 30035817 ACC1 Sugiyamaella lignohabitans acetyl-CoA carboxylase ACC1 XP_018733443.1 173456 D 796027 CDS AWJ20_3761 30035818 complement(177241..177642) C 1 NC_031671.1 uncharacterized protein 177642 30035818 AWJ20_3761 Sugiyamaella lignohabitans uncharacterized protein XP_018733444.1 177241 R 796027 CDS AWJ20_3762 30035819 complement(180252..182000) C 1 NC_031671.1 Transcriptional regulator of nonfermentable carbon utilization; GFP-fusion protein localizes to cytoplasm, nucleus; null mutation affects periodicity of transcriptional and metabolic oscillation; plays role in restricting Ty1 transposition; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19111667]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19158363]; GO_function: GO:0000981 - sequence-specific DNA binding RNA polymerase II transcription factor activity [Evidence IEA]; GO_function: GO:0004871 - signal transducer activity [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0006094 - gluconeogenesis [Evidence IEA]; GO_process: GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence IEA]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA,IEA]; GO_process: GO:0007165 - signal transduction [Evidence IEA]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Ert1p 182000 ERT1 30035819 ERT1 Sugiyamaella lignohabitans Ert1p XP_018733445.1 180252 R 796027 CDS AWJ20_3763 30035820 185275..187482 C 1 NC_031671.1 Arginine/alanine amino peptidase; overproduction stimulates glycogen accumulation; AAP1 has a paralog, APE2, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0004177 - aminopeptidase activity [Evidence IEA]; GO_function: GO:0004177 - aminopeptidase activity [Evidence ISS] [PMID 8100228]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0008237 - metallopeptidase activity [Evidence IEA,IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0005977 - glycogen metabolic process [Evidence IMP] [PMID 8100228]; GO_process: GO:0006508 - proteolysis [Evidence IEA,IEA]; GO_process: GO:0006508 - proteolysis [Evidence IMP] [PMID 8100228]; Aap1p 187482 AAP1 30035820 AAP1 Sugiyamaella lignohabitans Aap1p XP_018733446.1 185275 D 796027 CDS AWJ20_3764 30035821 194525..195049 C 1 NC_031671.1 uncharacterized protein 195049 30035821 AWJ20_3764 Sugiyamaella lignohabitans uncharacterized protein XP_018733447.1 194525 D 796027 CDS AWJ20_3765 30035822 195959..201064 C 1 NC_031671.1 protein kinase RIM15 201064 RIM15 30035822 RIM15 Sugiyamaella lignohabitans protein kinase RIM15 XP_018733448.1 195959 D 796027 CDS AWJ20_3766 30035823 complement(201367..203100) C 1 NC_031671.1 Negative regulatory subunit of protein phosphatase 1 (Ppz1p); involved in coenzyme A biosynthesis; subunit of phosphopantothenoylcysteine decarboxylase (PPCDC: Cab3p, Sis2p, Vhs3p) complex and the CoA-Synthesizing Protein Complex (CoA-SPC: Cab2p, Cab3p, Cab4p, Cab5p, Sis2p and Vhs3p); SIS2 has a paralog, VHS3, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IC,IPI] [PMID 9636153]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 7705654]; GO_component: GO:0005634 - nucleus [Evidence IPI] [PMID 9636153]; GO_component: GO:0071513 - phosphopantothenoylcysteine decarboxylase complex [Evidence IDA] [PMID 19915539]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0004633 - phosphopantothenoylcysteine decarboxylase activity [Evidence ISS] [PMID 10592175]; GO_function: GO:0004633 - phosphopantothenoylcysteine decarboxylase activity [Evidence IDA,IMP] [PMID 19915539]; GO_function: GO:0004864 - protein phosphatase inhibitor activity [Evidence IEA]; GO_function: GO:0004864 - protein phosphatase inhibitor activity [Evidence IDA] [PMID 9636153]; GO_process: GO:0015937 - coenzyme A biosynthetic process [Evidence IEA]; GO_process: GO:0015937 - coenzyme A biosynthetic process [Evidence ISS] [PMID 10592175]; GO_process: GO:0043086 - negative regulation of catalytic activity [Evidence IEA]; GO_process: GO:0007346 - regulation of mitotic cell cycle [Evidence IGI] [PMID 10022927]; GO_process: GO:0009651 - response to salt stress [Evidence IGI,IMP] [PMID 9636153]; phosphopantothenoylcysteine decarboxylase complex subunit SIS2 203100 SIS2 30035823 SIS2 Sugiyamaella lignohabitans phosphopantothenoylcysteine decarboxylase complex subunit SIS2 XP_018733449.1 201367 R 796027 CDS AWJ20_3767 30035824 206522..208168 C 1 NC_031671.1 Cyclin; interacts with cyclin-dependent kinase Pho85p; regulates the response to nutrient levels and environmental conditions, including the response to phosphate limitation and stress-dependent calcium signaling; GO_component: GO:0000307 - cyclin-dependent protein kinase holoenzyme complex [Evidence IPI] [PMID 8108735]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9853758]; GO_function: GO:0016538 - cyclin-dependent protein serine/threonine kinase regulator activity [Evidence IDA] [PMID 8108735]; GO_function: GO:0019901 - protein kinase binding [Evidence IEA]; GO_process: GO:0006875 - cellular metal ion homeostasis [Evidence IMP] [PMID 20429018]; GO_process: GO:0050849 - negative regulation of calcium-mediated signaling [Evidence IGI] [PMID 16455487]; GO_process: GO:0016242 - negative regulation of macroautophagy [Evidence IMP] [PMID 20417603]; GO_process: GO:0045936 - negative regulation of phosphate metabolic process [Evidence IGI] [PMID 3915785]; GO_process: GO:0000122 - negative regulation of transcription from RNA polymerase II promoter [Evidence IGI] [PMID 3915785]; GO_process: GO:0000079 - regulation of cyclin-dependent protein serine/threonine kinase activity [Evidence IEA]; GO_process: GO:0000079 - regulation of cyclin-dependent protein serine/threonine kinase activity [Evidence IDA] [PMID 8108735]; GO_process: GO:0032880 - regulation of protein localization [Evidence IMP] [PMID 16455487]; Pho80p 208168 PHO80 30035824 PHO80 Sugiyamaella lignohabitans Pho80p XP_018733450.1 206522 D 796027 CDS AWJ20_3768 30035825 209713..210915 C 1 NC_031671.1 Ethanolamine-phosphate cytidylyltransferase; catalyzes the second step of phosphatidylethanolamine biosynthesis; involved in the maintenance of plasma membrane; similar to mammalian CTP: phosphocholine cytidylyl-transferases; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0004306 - ethanolamine-phosphate cytidylyltransferase activity [Evidence IEA]; GO_function: GO:0004306 - ethanolamine-phosphate cytidylyltransferase activity [Evidence IDA,IMP,ISS] [PMID 8982874]; GO_function: GO:0016779 - nucleotidyltransferase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0009058 - biosynthetic process [Evidence IEA]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0006646 - phosphatidylethanolamine biosynthetic process [Evidence IEA]; GO_process: GO:0006646 - phosphatidylethanolamine biosynthetic process [Evidence IMP] [PMID 8982874]; GO_process: GO:0008654 - phospholipid biosynthetic process [Evidence IEA]; ethanolamine-phosphate cytidylyltransferase 210915 ECT1 30035825 ECT1 Sugiyamaella lignohabitans ethanolamine-phosphate cytidylyltransferase XP_018733451.1 209713 D 796027 CDS AWJ20_3769 30035826 214505..217816 C 1 NC_031671.1 Chitin synthase I; requires activation from zymogenic form in order to catalyze the transfer of N-acetylglucosamine (GlcNAc) to chitin; required for repairing the chitin septum during cytokinesis; transcription activated by mating factor; GO_component: GO:0045009 - chitosome [Evidence IDA] [PMID 8970154]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 8970154]; GO_function: GO:0004100 - chitin synthase activity [Evidence IEA,IEA]; GO_function: GO:0004100 - chitin synthase activity [Evidence IDA] [PMID 7952171]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA]; GO_function: GO:0016758 - transferase activity, transferring hexosyl groups [Evidence IEA]; GO_process: GO:0006031 - chitin biosynthetic process [Evidence IEA]; GO_process: GO:0007109 - cytokinesis, completion of separation [Evidence IMP] [PMID 2523889]; chitin synthase CHS1 217816 CHS1 30035826 CHS1 Sugiyamaella lignohabitans chitin synthase CHS1 XP_018733452.1 214505 D 796027 CDS AWJ20_3770 30035828 218027..218737 C 1 NC_031671.1 Fungal Genetics Stock Center 12543; D-tyrosyl-tRNA(Tyr) deacylase 218737 dtd 30035828 dtd Sugiyamaella lignohabitans D-tyrosyl-tRNA(Tyr) deacylase XP_018733453.1 218027 D 796027 CDS AWJ20_3771 30035829 222301..223590 C 1 NC_031671.1 uncharacterized protein 223590 30035829 AWJ20_3771 Sugiyamaella lignohabitans uncharacterized protein XP_018733454.1 222301 D 796027 CDS AWJ20_3772 30035830 223899..226607 C 1 NC_031671.1 Subunit of U3-containing Small Subunit (SSU) processome complex; involved in production of 18S rRNA and assembly of small ribosomal subunit; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 12068309]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0032040 - small-subunit processome [Evidence IEA]; GO_component: GO:0032040 - small-subunit processome [Evidence IDA] [PMID 12068309]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0000480 - endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 15489292]; GO_process: GO:0000447 - endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 15489292]; GO_process: GO:0000472 - endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 15489292]; GO_process: GO:0006364 - rRNA processing [Evidence IEA,IEA]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; Utp14p 226607 UTP14 30035830 UTP14 Sugiyamaella lignohabitans Utp14p XP_018733455.1 223899 D 796027 CDS AWJ20_3773 30035831 232657..235095 C 1 NC_031671.1 Transcriptional repressor; binds to promoter sequences of the cyclin genes, CYS3, and SMF2; expression is induced by stress or starvation during mitosis, and late in meiosis; member of the Swi4p/Mbp1p family; potential Cdc28p substrate; relative distribution to the nucleus increases upon DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_component: GO:0005634 - nucleus [Evidence IDA,IPI] [PMID 9343412]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19111667]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19158363]; GO_function: GO:0003700 - sequence-specific DNA binding transcription factor activity [Evidence IEA]; GO_function: GO:0003700 - sequence-specific DNA binding transcription factor activity [Evidence IDA] [PMID 9343412]; GO_process: GO:0042149 - cellular response to glucose starvation [Evidence IMP] [PMID 9343412]; GO_process: GO:0034605 - cellular response to heat [Evidence IMP] [PMID 9343412]; GO_process: GO:0034599 - cellular response to oxidative stress [Evidence IMP] [PMID 9343412]; GO_process: GO:0071472 - cellular response to salt stress [Evidence IMP] [PMID 9343412]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA,IEA]; GO_process: GO:0006950 - response to stress [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Xbp1p 235095 XBP1 30035831 XBP1 Sugiyamaella lignohabitans Xbp1p XP_018733456.1 232657 D 796027 CDS AWJ20_3774 30035832 complement(235754..236602) C 1 NC_031671.1 Mitochondrial ribosomal protein of the small subunit; has similarity to E. coli S10 ribosomal protein; essential for viability, unlike most other mitoribosomal proteins; GO_component: GO:0005763 - mitochondrial small ribosomal subunit [Evidence IPI] [PMID 11278769]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA,IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IPI] [PMID 11278769]; GO_process: GO:0032543 - mitochondrial translation [Evidence IC] [PMID 11278769]; GO_process: GO:0006412 - translation [Evidence IEA]; mitochondrial 37S ribosomal protein RSM10 236602 RSM10 30035832 RSM10 Sugiyamaella lignohabitans mitochondrial 37S ribosomal protein RSM10 XP_018733457.1 235754 R 796027 CDS AWJ20_3775 30035833 237120..237908 C 1 NC_031671.1 Nucleolar S-adenosylmethionine-dependent rRNA methyltransferase; methylates adenine (m1A) of the large subunit (LSU) rRNA at position 2142; belongs to Rossmann fold superfamily; green fluorescent protein (GFP)-fusion protein localizes to the nucleolus; YBR141C is not an essential gene; GO_component: GO:0005730 - nucleolus [Evidence IEA,IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 23558746]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_function: GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity [Evidence ISM] [PMID 19351663]; GO_function: GO:0008168 - methyltransferase activity [Evidence IEA]; GO_function: GO:0016433 - rRNA (adenine) methyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0016433 - rRNA (adenine) methyltransferase activity [Evidence IMP] [PMID 23558746]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0032259 - methylation [Evidence IEA]; GO_process: GO:0031167 - rRNA methylation [Evidence IEA,IEA]; Bmt2p 237908 BMT2 30035833 BMT2 Sugiyamaella lignohabitans Bmt2p XP_018733458.1 237120 D 796027 CDS AWJ20_3776 30035834 complement(238833..240815) C 1 NC_031671.1 Vacuolar transporter; imports large neutral amino acids into the vacuole; member of a family of seven S. cerevisiae genes (AVT1-7) related to vesicular GABA-glycine transporters; GO_component: GO:0000324 - fungal-type vacuole [Evidence IDA] [PMID 11274162]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IMP] [PMID 11274162]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0015186 - L-glutamine transmembrane transporter activity [Evidence IMP] [PMID 11274162]; GO_function: GO:0015188 - L-isoleucine transmembrane transporter activity [Evidence IMP] [PMID 11274162]; GO_function: GO:0005302 - L-tyrosine transmembrane transporter activity [Evidence IMP] [PMID 11274162]; GO_function: GO:0005215 - transporter activity [Evidence ISS] [PMID 11274162]; GO_process: GO:0006865 - amino acid transport [Evidence IEA]; GO_process: GO:0006865 - amino acid transport [Evidence IMP] [PMID 11274162]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0007034 - vacuolar transport [Evidence IMP] [PMID 11274162]; Avt1p 240815 AVT1 30035834 AVT1 Sugiyamaella lignohabitans Avt1p XP_018733459.1 238833 R 796027 CDS AWJ20_3777 30035835 242840..243553 C 1 NC_031671.1 uncharacterized protein 243553 30035835 AWJ20_3777 Sugiyamaella lignohabitans uncharacterized protein XP_018733460.1 242840 D 796027 CDS AWJ20_3778 30035836 complement(243867..245744) C 1 NC_031671.1 uncharacterized protein 245744 30035836 AWJ20_3778 Sugiyamaella lignohabitans uncharacterized protein XP_018733461.1 243867 R 796027 CDS AWJ20_3779 30035837 247766..248209 C 1 NC_031671.1 Rab family GTPase; GTP-binding protein of the rab family; required for homotypic fusion event in vacuole inheritance, for endosome-endosome fusion; interacts with the cargo selection/retromer complex for retrograde sorting; similar to mammalian Rab7; GO_component: GO:0000324 - fungal-type vacuole [Evidence IDA] [PMID 11853670]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 22593205]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IDA] [PMID 16407407]; GO_component: GO:0030906 - retromer complex, inner shell [Evidence IPI] [PMID 22593205]; GO_component: GO:0005773 - vacuole [Evidence IEA,IEA]; GO_function: GO:0005525 - GTP binding [Evidence IEA,IEA]; GO_function: GO:0003924 - GTPase activity [Evidence IDA] [PMID 11210571]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006896 - Golgi to vacuole transport [Evidence TAS] [PMID 9714809]; GO_process: GO:0006897 - endocytosis [Evidence IMP] [PMID 1473149]; GO_process: GO:0034727 - piecemeal microautophagy of nucleus [Evidence IMP] [PMID 18701704]; GO_process: GO:0072665 - protein localization to vacuole [Evidence IMP] [PMID 22593205]; GO_process: GO:0015031 - protein transport [Evidence IEA,IEA]; GO_process: GO:0032889 - regulation of vacuole fusion, non-autophagic [Evidence IMP] [PMID 11598008]; GO_process: GO:0032889 - regulation of vacuole fusion, non-autophagic [Evidence IMP] [PMID 7489715]; GO_process: GO:0042147 - retrograde transport, endosome to Golgi [Evidence IPI] [PMID 22593205]; GO_process: GO:0007264 - small GTPase mediated signal transduction [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0000011 - vacuole inheritance [Evidence IDA] [PMID 7489715]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IDA] [PMID 9015302]; Rab family GTPase YPT7 248209 YPT7 30035837 YPT7 Sugiyamaella lignohabitans Rab family GTPase YPT7 XP_018733462.1 247766 D 796027 CDS AWJ20_3780 30035839 join(250075..250118,250484..252407) C 1 NC_031671.1 Acetyl-coA synthetase isoform; along with Acs1p, acetyl-coA synthetase isoform is the nuclear source of acetyl-coA for histone acetylation; mutants affect global transcription; required for growth on glucose; expressed under anaerobic conditions; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 16857587]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 9711835]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 19618123]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 16857587]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 19618123]; GO_function: GO:0016208 - AMP binding [Evidence IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0003987 - acetate-CoA ligase activity [Evidence IEA,IEA]; GO_function: GO:0003987 - acetate-CoA ligase activity [Evidence IDA] [PMID 8910545]; GO_function: GO:0016880 - acid-ammonia (or amide) ligase activity [Evidence IDA] [PMID 18305111]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006085 - acetyl-CoA biosynthetic process [Evidence IDA] [PMID 8910545]; GO_process: GO:0019427 - acetyl-CoA biosynthetic process from acetate [Evidence IEA]; GO_process: GO:0016573 - histone acetylation [Evidence IMP] [PMID 16857587]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0006090 - pyruvate metabolic process [Evidence IEA]; GO_process: GO:0001302 - replicative cell aging [Evidence IMP] [PMID 19618123]; acetate--CoA ligase ACS2 252407 ACS2 30035839 ACS2 Sugiyamaella lignohabitans acetate--CoA ligase ACS2 XP_018733463.1 250075 D 796027 CDS AWJ20_3781 30035840 253907..254410 C 1 NC_031671.1 Usp (universal stress protein) family protein 254410 30035840 AWJ20_3781 Sugiyamaella lignohabitans Usp (universal stress protein) family protein XP_018733464.1 253907 D 796027 CDS AWJ20_3782 30035841 complement(254505..255671) C 1 NC_031671.1 Single-stranded DNA endonuclease (with Rad1p); cleaves single-stranded DNA during nucleotide excision repair and double-strand break repair; subunit of Nucleotide Excision Repair Factor 1 (NEF1); homolog of human ERCC1 protein; GO_component: GO:0000110 - nucleotide-excision repair factor 1 complex [Evidence IPI] [PMID 8621533]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9852079]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0003684 - damaged DNA binding [Evidence IEA]; GO_function: GO:0004519 - endonuclease activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0004518 - nuclease activity [Evidence IEA]; GO_function: GO:0003697 - single-stranded DNA binding [Evidence IDA] [PMID 1741062]; GO_function: GO:0000014 - single-stranded DNA endodeoxyribonuclease activity [Evidence IDA] [PMID 8253764]; GO_process: GO:0006277 - DNA amplification [Evidence IMP] [PMID 23271978]; GO_process: GO:0006281 - DNA repair [Evidence IEA,IEA]; GO_process: GO:0000733 - DNA strand renaturation [Evidence IDA] [PMID 1741062]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0000736 - double-strand break repair via single-strand annealing, removal of nonhomologous ends [Evidence IMP] [PMID 7891718]; GO_process: GO:0000710 - meiotic mismatch repair [Evidence IMP] [PMID 11514439]; GO_process: GO:0006312 - mitotic recombination [Evidence IMP] [PMID 2188090]; GO_process: GO:0006296 - nucleotide-excision repair, DNA incision, 5'-to lesion [Evidence IDA] [PMID 7559571]; GO_process: GO:0000735 - removal of nonhomologous ends [Evidence IMP] [PMID 7891718]; Rad10p 255671 RAD10 30035841 RAD10 Sugiyamaella lignohabitans Rad10p XP_018733465.1 254505 R 796027 CDS AWJ20_3783 30035842 258775..259539 C 1 NC_031671.1 uncharacterized protein 259539 30035842 AWJ20_3783 Sugiyamaella lignohabitans uncharacterized protein XP_018733466.1 258775 D 796027 CDS AWJ20_3784 30035843 complement(261086..261400) C 1 NC_031671.1 D-Tyr-tRNA(Tyr) deacylase; functions in protein translation, may affect nonsense suppression via alteration of the protein synthesis machinery; ubiquitous among eukaryotes; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0097358 - D-leucyl-tRNA(Leu) deacylase activity [Evidence IMP] [PMID 10918062]; GO_function: GO:0051500 - D-tyrosyl-tRNA(Tyr) deacylase activity [Evidence IMP] [PMID 10766779]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016788 - hydrolase activity, acting on ester bonds [Evidence IEA]; GO_process: GO:0019478 - D-amino acid catabolic process [Evidence IEA]; GO_process: GO:1900832 - D-leucine catabolic process [Evidence IMP] [PMID 10918062]; GO_process: GO:1900829 - D-tyrosine catabolic process [Evidence IMP] [PMID 10918062]; GO_process: GO:0006399 - tRNA metabolic process [Evidence IMP] [PMID 10918062]; Dtd1p 261400 DTD1 30035843 DTD1 Sugiyamaella lignohabitans Dtd1p XP_018733467.1 261086 R 796027 CDS AWJ20_3785 30035844 262458..265166 C 1 NC_031671.1 F-box protein Pof10 265166 pof10 30035844 pof10 Sugiyamaella lignohabitans F-box protein Pof10 XP_018733468.1 262458 D 796027 CDS AWJ20_3786 30035845 complement(265219..267531) C 1 NC_031671.1 uncharacterized protein 267531 30035845 AWJ20_3786 Sugiyamaella lignohabitans uncharacterized protein XP_018733469.1 265219 R 796027 CDS AWJ20_3787 30035846 complement(267669..269339) C 1 NC_031671.1 uncharacterized protein 269339 30035846 AWJ20_3787 Sugiyamaella lignohabitans uncharacterized protein XP_018733470.1 267669 R 796027 CDS AWJ20_3788 30035847 274120..275625 C 1 NC_031671.1 Plasma membrane G protein coupled receptor (GPCR); interacts with the heterotrimeric G protein alpha subunit, Gpa2p, and with Plc1p; sensor that integrates nutritional signals with the modulation of cell fate via PKA and cAMP synthesis; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 10655215]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 9388468]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 9524122]; GO_function: GO:0004930 - G-protein coupled receptor activity [Evidence IEA]; GO_function: GO:0004930 - G-protein coupled receptor activity [Evidence IPI] [PMID 9388468]; GO_function: GO:0004930 - G-protein coupled receptor activity [Evidence IMP,IPI,ISS] [PMID 9524122]; GO_function: GO:0005536 - glucose binding [Evidence IMP] [PMID 15494315]; GO_function: GO:0004871 - signal transducer activity [Evidence IEA]; GO_process: GO:0007186 - G-protein coupled receptor signaling pathway [Evidence IEA]; GO_process: GO:0007186 - G-protein coupled receptor signaling pathway [Evidence IPI] [PMID 9388468]; GO_process: GO:0007186 - G-protein coupled receptor signaling pathway [Evidence IMP,IPI] [PMID 9524122]; GO_process: GO:0051594 - detection of glucose [Evidence IMP] [PMID 15494315]; GO_process: GO:0009731 - detection of sucrose stimulus [Evidence IMP] [PMID 15494315]; GO_process: GO:0010255 - glucose mediated signaling pathway [Evidence IGI,IMP] [PMID 10361302]; GO_process: GO:0010255 - glucose mediated signaling pathway [Evidence IMP] [PMID 15494315]; GO_process: GO:0010255 - glucose mediated signaling pathway [Evidence IMP] [PMID 9813141]; GO_process: GO:0009757 - hexose mediated signaling [Evidence IMP] [PMID 10655215]; GO_process: GO:0009757 - hexose mediated signaling [Evidence IGI,IMP] [PMID 9813141]; GO_process: GO:0001403 - invasive growth in response to glucose limitation [Evidence IMP] [PMID 12150916]; GO_process: GO:0007124 - pseudohyphal growth [Evidence IMP] [PMID 10655215]; GO_process: GO:0001302 - replicative cell aging [Evidence IMP] [PMID 15722108]; GO_process: GO:0007165 - signal transduction [Evidence IEA]; GO_process: GO:0009745 - sucrose mediated signaling [Evidence IMP] [PMID 15494315]; Gpr1p 275625 GPR1 30035847 GPR1 Sugiyamaella lignohabitans Gpr1p XP_018733471.1 274120 D 796027 CDS AWJ20_3789 30035848 complement(275748..276599) C 1 NC_031671.1 Protein lysine methyltransferase; monomethylates Lys-46 of the ribosomal large subunit Rpl1a/Rpl1b; member of the seven beta-strand methyltransferase superfamily; orthologs only found among fungal species; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity [Evidence ISM] [PMID 19351663]; GO_function: GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity [Evidence IDA] [PMID 21460220]; GO_function: GO:0008168 - methyltransferase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0032259 - methylation [Evidence IEA]; GO_process: GO:0006479 - protein methylation [Evidence IDA] [PMID 21460220]; Rkm5p 276599 RKM5 30035848 RKM5 Sugiyamaella lignohabitans Rkm5p XP_018733472.1 275748 R 796027 CDS AWJ20_3790 30035850 complement(276882..277388) C 1 NC_031671.1 Aspartic beta semi-aldehyde dehydrogenase; catalyzes the second step in the common pathway for methionine and threonine biosynthesis; expression regulated by Gcn4p and the general control of amino acid synthesis; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 16622836]; GO_function: GO:0003942 - N-acetyl-gamma-glutamyl-phosphate reductase activity [Evidence IEA]; GO_function: GO:0051287 - NAD binding [Evidence IEA]; GO_function: GO:0050661 - NADP binding [Evidence IEA]; GO_function: GO:0004073 - aspartate-semialdehyde dehydrogenase activity [Evidence IEA,IEA]; GO_function: GO:0004073 - aspartate-semialdehyde dehydrogenase activity [Evidence IDA] [PMID 4145650]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0016620 - oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor [Evidence IEA]; GO_function: GO:0046983 - protein dimerization activity [Evidence IEA]; GO_process: GO:0006531 - aspartate metabolic process [Evidence IEA]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0006520 - cellular amino acid metabolic process [Evidence IEA]; GO_process: GO:0009090 - homoserine biosynthetic process [Evidence IMP] [PMID 4380684]; GO_process: GO:0009097 - isoleucine biosynthetic process [Evidence IEA]; GO_process: GO:0009085 - lysine biosynthetic process [Evidence IEA]; GO_process: GO:0009089 - lysine biosynthetic process via diaminopimelate [Evidence IEA,IEA]; GO_process: GO:0009086 - methionine biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0009086 - methionine biosynthetic process [Evidence IMP] [PMID 4380684]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0009088 - threonine biosynthetic process [Evidence IEA,IEA,IEA]; GO_process: GO:0009088 - threonine biosynthetic process [Evidence IMP] [PMID 4380684]; aspartate-semialdehyde dehydrogenase 277388 HOM2 30035850 HOM2 Sugiyamaella lignohabitans aspartate-semialdehyde dehydrogenase XP_018733473.1 276882 R 796027 CDS AWJ20_3791 30035851 278542..281805 C 1 NC_031671.1 Subunit of the Set3 complex; complex is a meiotic-specific repressor of sporulation specific genes that contains deacetylase activity; potential Cdc28p substrate; GO_component: GO:0034967 - Set3 complex [Evidence IDA] [PMID 11711434]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0016575 - histone deacetylation [Evidence IDA] [PMID 11711434]; GO_process: GO:0045835 - negative regulation of meiosis [Evidence IPI] [PMID 11711434]; Hos4p 281805 HOS4 30035851 HOS4 Sugiyamaella lignohabitans Hos4p XP_018733474.1 278542 D 796027 CDS AWJ20_3792 30035852 complement(282424..283662) C 1 NC_031671.1 uncharacterized protein 283662 30035852 AWJ20_3792 Sugiyamaella lignohabitans uncharacterized protein XP_018733475.1 282424 R 796027 CDS AWJ20_3793 30035853 287753..288880 C 1 NC_031671.1 Fructose-2,6-bisphosphatase, required for glucose metabolism; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0003873 - 6-phosphofructo-2-kinase activity [Evidence IKR] [PMID 9032445]; GO_function: GO:0003873 - 6-phosphofructo-2-kinase activity [Evidence IKR] [PMID 9032446]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0004331 - fructose-2,6-bisphosphate 2-phosphatase activity [Evidence IEA,IEA]; GO_function: GO:0004331 - fructose-2,6-bisphosphate 2-phosphatase activity [Evidence IMP] [PMID 1322693]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0016311 - dephosphorylation [Evidence IEA,IEA]; GO_process: GO:0006003 - fructose 2,6-bisphosphate metabolic process [Evidence IEA]; GO_process: GO:0006000 - fructose metabolic process [Evidence IEA]; GO_process: GO:0006006 - glucose metabolic process [Evidence IMP] [PMID 1322693]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; Fbp26p 288880 FBP26 30035853 FBP26 Sugiyamaella lignohabitans Fbp26p XP_018733476.1 287753 D 796027 CDS AWJ20_3794 30035854 289346..291289 C 1 NC_031671.1 DNA helicase SRS2 291289 SRS2 30035854 SRS2 Sugiyamaella lignohabitans DNA helicase SRS2 XP_018733477.1 289346 D 796027 CDS AWJ20_3795 30035855 complement(291885..292643) C 1 NC_031671.1 uncharacterized protein 292643 30035855 AWJ20_3795 Sugiyamaella lignohabitans uncharacterized protein XP_018733478.1 291885 R 796027 CDS AWJ20_3796 30035856 complement(293054..294529) C 1 NC_031671.1 glucose-inactivated glycerol proton symporter STL1 294529 STL1 30035856 STL1 Sugiyamaella lignohabitans glucose-inactivated glycerol proton symporter STL1 XP_018733479.1 293054 R 796027 CDS AWJ20_3797 30035857 296215..298728 C 1 NC_031671.1 serine/threonine/tyrosine protein kinase MPS1 298728 MPS1 30035857 MPS1 Sugiyamaella lignohabitans serine/threonine/tyrosine protein kinase MPS1 XP_018733480.1 296215 D 796027 CDS AWJ20_3798 30035858 302689..303480 C 1 NC_031671.1 GTP-binding protein; regulates nitrogen starvation response, sporulation, and filamentous growth; farnesylation and palmitoylation required for activity and localization to plasma membrane; homolog of mammalian Ras proto-oncogenes; RAS2 has a paralog, RAS1, that arose from the whole genome duplication; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IDA] [PMID 22575457]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 22575457]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 23127800]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 11914276]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 16622836]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 20162532]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 23127800]; GO_function: GO:0005525 - GTP binding [Evidence IEA,IEA]; GO_function: GO:0005525 - GTP binding [Evidence IDA] [PMID 6438624]; GO_function: GO:0003924 - GTPase activity [Evidence IDA] [PMID 8106517]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006184 - GTP catabolic process [Evidence IEA]; GO_process: GO:0007190 - activation of adenylate cyclase activity [Evidence IDA] [PMID 8106517]; GO_process: GO:0030437 - ascospore formation [Evidence IMP] [PMID 2558958]; GO_process: GO:0045762 - positive regulation of adenylate cyclase activity [Evidence IGI] [PMID 2981630]; GO_process: GO:0045762 - positive regulation of adenylate cyclase activity [Evidence IGI] [PMID 3891097]; GO_process: GO:0000411 - positive regulation of transcription by galactose [Evidence IMP] [PMID 16292676]; GO_process: GO:0097271 - protein localization to bud neck [Evidence IGI] [PMID 12782684]; GO_process: GO:0007124 - pseudohyphal growth [Evidence IMP] [PMID 1547504]; GO_process: GO:0032880 - regulation of protein localization [Evidence IMP] [PMID 15917658]; GO_process: GO:0001302 - replicative cell aging [Evidence IMP] [PMID 12839995]; GO_process: GO:0001302 - replicative cell aging [Evidence IMP] [PMID 8034612]; GO_process: GO:0007165 - signal transduction [Evidence IEA]; GO_process: GO:0007264 - small GTPase mediated signal transduction [Evidence IEA]; Ras family GTPase RAS2 303480 RAS2 30035858 RAS2 Sugiyamaella lignohabitans Ras family GTPase RAS2 XP_018733481.1 302689 D 796027 CDS AWJ20_3799 30035859 complement(306722..308389) C 1 NC_031671.1 Presumed antiporter of the major facilitator superfamily; member of the 12-spanner drug:H(+) antiporter DHA1 family; expression of gene is up-regulated in cells exhibiting reduced susceptibility to azoles; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016021 - integral component of membrane [Evidence ISS] [PMID 9046086]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA,IEA]; GO_function: GO:0015297 - antiporter activity [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0005215 - transporter activity [Evidence IEA]; GO_process: GO:0015893 - drug transport [Evidence IEP] [PMID 12697649]; GO_process: GO:0006811 - ion transport [Evidence IEA]; GO_process: GO:0015992 - proton transport [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; Yhk8p 308389 YHK8 30035859 YHK8 Sugiyamaella lignohabitans Yhk8p XP_018733482.1 306722 R 796027 CDS AWJ20_3800 30035862 complement(311367..311768) C 1 NC_031671.1 Peptidylprolyl-cis/trans-isomerase (PPIase); specific for phosphorylated serine and threonine residues N-terminal to proline; regulates phosphorylation of the RNAP II large subunit (Rpo21p) C-terminal domain (CTD); associates with phospho-Ser5 form of RNAP II in vivo; regulates phosphorylation of Ser7 within CTD; present along entire coding length of genes; represses initiation of CUTs; required for efficient termination of mRNA transcription and trimethylation of histone H3; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IC] [PMID 10531363]; GO_component: GO:0005634 - nucleus [Evidence IC] [PMID 10899126]; GO_component: GO:0005634 - nucleus [Evidence IC] [PMID 10899127]; GO_component: GO:0005634 - nucleus [Evidence IC] [PMID 11708797]; GO_component: GO:0005634 - nucleus [Evidence IC] [PMID 14704159]; GO_function: GO:0000993 - RNA polymerase II core binding [Evidence IPI] [PMID 10531363]; GO_function: GO:0000993 - RNA polymerase II core binding [Evidence IPI] [PMID 10899126]; GO_function: GO:0016853 - isomerase activity [Evidence IEA,IEA]; GO_function: GO:0003755 - peptidyl-prolyl cis-trans isomerase activity [Evidence IEA,IEA]; GO_function: GO:0003755 - peptidyl-prolyl cis-trans isomerase activity [Evidence IDA,IMP] [PMID 15728580]; GO_function: GO:0003755 - peptidyl-prolyl cis-trans isomerase activity [Evidence IDA] [PMID 9867817]; GO_process: GO:0080182 - histone H3-K4 trimethylation [Evidence IGI,IMP] [PMID 22778132]; GO_process: GO:0031064 - negative regulation of histone deacetylation [Evidence IMP,IPI] [PMID 10899127]; GO_process: GO:2000059 - negative regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 19597489]; GO_process: GO:0000122 - negative regulation of transcription from RNA polymerase II promoter [Evidence IGI,IMP] [PMID 14704159]; GO_process: GO:0045899 - positive regulation of RNA polymerase II transcriptional preinitiation complex assembly [Evidence IGI] [PMID 15166139]; GO_process: GO:2000749 - positive regulation of chromatin silencing at rDNA [Evidence IMP] [PMID 10899127]; GO_process: GO:0035307 - positive regulation of protein dephosphorylation [Evidence IDA] [PMID 11904169]; GO_process: GO:0035307 - positive regulation of protein dephosphorylation [Evidence IMP] [PMID 19854134]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IGI,IPI] [PMID 10899126]; GO_process: GO:0006457 - protein folding [Evidence IEA]; GO_process: GO:0000413 - protein peptidyl-prolyl isomerization [Evidence IDA,IMP] [PMID 15728580]; GO_process: GO:1901407 - regulation of phosphorylation of RNA polymerase II C-terminal domain [Evidence IDA] [PMID 22778132]; GO_process: GO:0000083 - regulation of transcription involved in G1/S transition of mitotic cell cycle [Evidence IMP] [PMID 11708797]; GO_process: GO:0000117 - regulation of transcription involved in G2/M transition of mitotic cell cycle [Evidence IMP] [PMID 11708797]; GO_process: GO:0006369 - termination of RNA polymerase II transcription [Evidence IMP] [PMID 14704159]; GO_process: GO:0006369 - termination of RNA polymerase II transcription [Evidence IGI,IMP] [PMID 19854134]; GO_process: GO:0006369 - termination of RNA polymerase II transcription [Evidence IMP] [PMID 22778132]; peptidylprolyl isomerase ESS1 311768 ESS1 30035862 ESS1 Sugiyamaella lignohabitans peptidylprolyl isomerase ESS1 XP_018733483.1 311367 R 796027 CDS AWJ20_3801 30035863 313836..314834 C 1 NC_031671.1 uncharacterized protein 314834 30035863 AWJ20_3801 Sugiyamaella lignohabitans uncharacterized protein XP_018733484.1 313836 D 796027 CDS AWJ20_3802 30035864 315717..316349 C 1 NC_031671.1 uncharacterized protein 316349 30035864 AWJ20_3802 Sugiyamaella lignohabitans uncharacterized protein XP_018733485.1 315717 D 796027 CDS AWJ20_3803 30035865 complement(316646..319810) C 1 NC_031671.1 uncharacterized protein 319810 30035865 AWJ20_3803 Sugiyamaella lignohabitans uncharacterized protein XP_018733486.1 316646 R 796027 CDS AWJ20_3805 30035867 321912..323276 C 1 NC_031671.1 uncharacterized protein 323276 30035867 AWJ20_3805 Sugiyamaella lignohabitans uncharacterized protein XP_018733487.1 321912 D 796027 CDS AWJ20_3806 30035868 323630..324391 C 1 NC_031671.1 uncharacterized protein 324391 30035868 AWJ20_3806 Sugiyamaella lignohabitans uncharacterized protein XP_018733488.1 323630 D 796027 CDS AWJ20_3807 30035869 complement(327407..329305) C 1 NC_031671.1 Calcineurin A; one isoform (the other is Cna1p) of the catalytic subunit of calcineurin, a Ca++/calmodulin-regulated protein phosphatase which regulates Crz1p (a stress-response transcription factor), the other calcineurin subunit is CNB1; regulates the function of Aly1p alpha-arrestin; CMP2 has a paralog, CNA1, that arose from the whole genome duplication; GO_component: GO:0005955 - calcineurin complex [Evidence IPI] [PMID 10887154]; GO_component: GO:0005955 - calcineurin complex [Evidence IDA] [PMID 1321337]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0004723 - calcium-dependent protein serine/threonine phosphatase activity [Evidence IDA] [PMID 1321337]; GO_function: GO:0005516 - calmodulin binding [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA,IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004721 - phosphoprotein phosphatase activity [Evidence IEA,IEA]; GO_process: GO:0000754 - adaptation of signaling pathway by response to pheromone involved in conjugation with cellular fusion [Evidence IMP] [PMID 1651503]; GO_process: GO:0006873 - cellular ion homeostasis [Evidence IMP] [PMID 8798496]; GO_process: GO:0016311 - dephosphorylation [Evidence IEA,IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA,IEA]; calcineurin catalytic subunit A 329305 CMP2 30035869 CMP2 Sugiyamaella lignohabitans calcineurin catalytic subunit A XP_018733489.1 327407 R 796027 CDS AWJ20_3808 30035870 330504..331115 C 1 NC_031671.1 Protein with a potential role in pre-rRNA processing; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0000462 - maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 12837249]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; Tsr2p 331115 TSR2 30035870 TSR2 Sugiyamaella lignohabitans Tsr2p XP_018733490.1 330504 D 796027 CDS AWJ20_3809 30035871 complement(331283..333655) C 1 NC_031671.1 uncharacterized protein 333655 30035871 AWJ20_3809 Sugiyamaella lignohabitans uncharacterized protein XP_018733491.1 331283 R 796027 CDS AWJ20_3811 30035874 334574..335491 C 1 NC_031671.1 Chitin deacetylase; together with Cda2p involved in the biosynthesis ascospore wall component, chitosan; required for proper rigidity of the ascospore wall; GO_component: GO:0005631 - chitosan layer of spore wall [Evidence ISS] [PMID 8940152]; GO_component: GO:0005628 - prospore membrane [Evidence IDA] [PMID 24390141]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0004099 - chitin deacetylase activity [Evidence IEA]; GO_function: GO:0004099 - chitin deacetylase activity [Evidence IDA,ISS] [PMID 8940152]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016810 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds [Evidence IEA]; GO_process: GO:0030476 - ascospore wall assembly [Evidence IDA,IMP] [PMID 8940152]; GO_process: GO:0005975 - carbohydrate metabolic process [Evidence IEA,IEA]; GO_process: GO:0006032 - chitin catabolic process [Evidence IEA]; GO_process: GO:0000272 - polysaccharide catabolic process [Evidence IEA]; GO_process: GO:0030435 - sporulation resulting in formation of a cellular spore [Evidence IEA]; chitin deacetylase CDA1 335491 CDA1 30035874 CDA1 Sugiyamaella lignohabitans chitin deacetylase CDA1 XP_018733492.1 334574 D 796027 CDS AWJ20_3812 30035875 337686..339938 C 1 NC_031671.1 Ubiquinone/menaquinone biosynthesis methyltransferase ubiE 339938 TMT1 30035875 TMT1 Sugiyamaella lignohabitans Ubiquinone/menaquinone biosynthesis methyltransferase ubiE XP_018733493.1 337686 D 796027 CDS AWJ20_3813 30035876 341366..342292 C 1 NC_031671.1 uncharacterized protein 342292 30035876 AWJ20_3813 Sugiyamaella lignohabitans uncharacterized protein XP_018733494.1 341366 D 796027 CDS AWJ20_3814 30035877 342657..344816 C 1 NC_031671.1 Cu(+2)-transporting P-type ATPase; required for export of copper from the cytosol into an extracytosolic compartment; has similarity to human proteins involved in Menkes and Wilsons diseases; protein abundance increases in response to DNA replication stress; affects TBSV model (+)RNA virus replication by regulating copper metabolism; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0012510 - trans-Golgi network transport vesicle membrane [Evidence IDA] [PMID 9325307]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0019829 - cation-transporting ATPase activity [Evidence IEA]; GO_function: GO:0019829 - cation-transporting ATPase activity [Evidence IDA] [PMID 15078884]; GO_function: GO:0019829 - cation-transporting ATPase activity [Evidence IMP] [PMID 7708696]; GO_function: GO:0005507 - copper ion binding [Evidence IEA]; GO_function: GO:0005507 - copper ion binding [Evidence IDA] [PMID 17961510]; GO_function: GO:0043682 - copper-transporting ATPase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA,IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_process: GO:0006812 - cation transport [Evidence IEA]; GO_process: GO:0006879 - cellular iron ion homeostasis [Evidence IMP] [PMID 7708696]; GO_process: GO:0060003 - copper ion export [Evidence IMP] [PMID 7708696]; GO_process: GO:0006825 - copper ion transport [Evidence IEA,IEA]; GO_process: GO:0006811 - ion transport [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0030001 - metal ion transport [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IMP] [PMID 7708696]; GO_process: GO:0006810 - transport [Evidence IEA]; Cu(2+)-transporting P-type ATPase CCC2 344816 CCC2 30035877 CCC2 Sugiyamaella lignohabitans Cu(2+)-transporting P-type ATPase CCC2 XP_018733495.1 342657 D 796027 CDS AWJ20_3815 30035878 complement(345007..345756) C 1 NC_031671.1 Tetrameric phosphoglycerate mutase; mediates the conversion of 3-phosphoglycerate to 2-phosphoglycerate during glycolysis and the reverse reaction during gluconeogenesis; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 3332961]; GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IEA]; GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IDA] [PMID 22984289]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16962558]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016868 - intramolecular transferase activity, phosphotransferases [Evidence IEA]; GO_function: GO:0016853 - isomerase activity [Evidence IEA]; GO_function: GO:0004619 - phosphoglycerate mutase activity [Evidence IEA]; GO_function: GO:0004619 - phosphoglycerate mutase activity [Evidence IDA] [PMID 1386023]; GO_function: GO:0004619 - phosphoglycerate mutase activity [Evidence IMP] [PMID 3033435]; GO_process: GO:0006094 - gluconeogenesis [Evidence IMP] [PMID 3033435]; GO_process: GO:0006096 - glycolytic process [Evidence IEA,IEA,IEA]; GO_process: GO:0006096 - glycolytic process [Evidence IMP] [PMID 11015729]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; phosphoglycerate mutase GPM1 345756 GPM1 30035878 GPM1 Sugiyamaella lignohabitans phosphoglycerate mutase GPM1 XP_018733496.1 345007 R 796027 CDS AWJ20_3816 30035879 349711..350178 C 1 NC_031671.1 Rab family GTPase; involved in the ER-to-Golgi step of the secretory pathway; complex formation with the Rab escort protein Mrs6p is required for prenylation of Ypt1p by protein geranylgeranyltransferase type II (Bet2p-Bet4p); binds to unspliced HAC1 mRNA; regulates unfolded protein response (UPR) by promoting the decay of HAC1 RNA; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA]; GO_component: GO:0000139 - Golgi membrane [Evidence IDA] [PMID 10747087]; GO_component: GO:0005795 - Golgi stack [Evidence IDA] [PMID 12802060]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0031410 - cytoplasmic vesicle [Evidence IDA] [PMID 23129774]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IDA] [PMID 10747087]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0000407 - pre-autophagosomal structure [Evidence IDA] [PMID 20375281]; GO_component: GO:0005802 - trans-Golgi network [Evidence IDA] [PMID 20059749]; GO_function: GO:0005525 - GTP binding [Evidence IEA,IEA]; GO_function: GO:0003924 - GTPase activity [Evidence IDA] [PMID 3311726]; GO_function: GO:0003924 - GTPase activity [Evidence IDA] [PMID 9447979]; GO_function: GO:0000149 - SNARE binding [Evidence IDA,IPI] [PMID 18388317]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0090114 - COPII-coated vesicle budding [Evidence IMP] [PMID 15689495]; GO_process: GO:0032258 - CVT pathway [Evidence IMP] [PMID 20375281]; GO_process: GO:0006888 - ER to Golgi vesicle-mediated transport [Evidence IMP] [PMID 15689495]; GO_process: GO:0006888 - ER to Golgi vesicle-mediated transport [Evidence IMP] [PMID 2504726]; GO_process: GO:0006888 - ER to Golgi vesicle-mediated transport [Evidence IMP] [PMID 7593181]; GO_process: GO:0048194 - Golgi vesicle budding [Evidence IGI] [PMID 18388317]; GO_process: GO:0048211 - Golgi vesicle docking [Evidence IMP] [PMID 9545229]; GO_process: GO:0035494 - SNARE complex disassembly [Evidence IMP] [PMID 9157884]; GO_process: GO:0034498 - early endosome to Golgi transport [Evidence IMP] [PMID 20059749]; GO_process: GO:0032456 - endocytic recycling [Evidence IMP] [PMID 20059749]; GO_process: GO:0016236 - macroautophagy [Evidence IMP] [PMID 20375281]; GO_process: GO:1990261 - pre-mRNA catabolic process [Evidence IMP] [PMID 22844259]; GO_process: GO:0006461 - protein complex assembly [Evidence IDA] [PMID 8603910]; GO_process: GO:0015031 - protein transport [Evidence IEA,IEA]; GO_process: GO:1900101 - regulation of endoplasmic reticulum unfolded protein response [Evidence IMP] [PMID 22844259]; GO_process: GO:0006890 - retrograde vesicle-mediated transport, Golgi to ER [Evidence IGI,IMP] [PMID 18388317]; GO_process: GO:0007264 - small GTPase mediated signal transduction [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IEA]; Rab family GTPase YPT1 350178 YPT1 30035879 YPT1 Sugiyamaella lignohabitans Rab family GTPase YPT1 XP_018733497.1 349711 D 796027 CDS AWJ20_3817 30035880 350571..352538 C 1 NC_031671.1 Pumilio-homology domain protein; binds the 3' UTR of ASH1 mRNA and represses its translation, resulting in proper asymmetric localization of ASH1 mRNA; required at post-transcriptional step for efficient retrotransposition; absence results in decreased Ty1 Gag:GFP protein levels; co-sediments with the 60S ribosomal subunit and is required for its biogenesis; GO_component: GO:0005934 - cellular bud tip [Evidence IEA]; GO_component: GO:0015934 - large ribosomal subunit [Evidence IDA] [PMID 19806183]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003723 - RNA binding [Evidence IEA,IEA]; GO_function: GO:0003730 - mRNA 3'-UTR binding [Evidence IDA] [PMID 15198983]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_function: GO:0000900 - translation repressor activity, nucleic acid binding [Evidence IDA] [PMID 15198983]; GO_process: GO:0017148 - negative regulation of translation [Evidence IDA] [PMID 15198983]; GO_process: GO:0006417 - regulation of translation [Evidence IEA]; GO_process: GO:0042273 - ribosomal large subunit biogenesis [Evidence IMP] [PMID 19806183]; GO_process: GO:0006810 - transport [Evidence IEA]; Puf6p 352538 PUF6 30035880 PUF6 Sugiyamaella lignohabitans Puf6p XP_018733498.1 350571 D 796027 CDS AWJ20_3818 30035881 complement(352859..353602) C 1 NC_031671.1 Subunit of the Hap2p/3p/4p/5p CCAAT-binding complex; complex is heme-activated and glucose-repressed; complex is a transcriptional activator and global regulator of respiratory gene expression; contains sequences contributing to both complex assembly and DNA binding; GO_component: GO:0016602 - CCAAT-binding factor complex [Evidence IDA,IPI] [PMID 2832951]; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0000978 - RNA polymerase II core promoter proximal region sequence-specific DNA binding [Evidence IDA] [PMID 7828851]; GO_function: GO:0001077 - RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription [Evidence IDA] [PMID 2832951]; GO_function: GO:0046982 - protein heterodimerization activity [Evidence IEA]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO_process: GO:0000436 - carbon catabolite activation of transcription from RNA polymerase II promoter [Evidence IDA] [PMID 2832951]; GO_process: GO:0043457 - regulation of cellular respiration [Evidence IMP] [PMID 2182199]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA,IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Hap3p 353602 HAP3 30035881 HAP3 Sugiyamaella lignohabitans Hap3p XP_018733499.1 352859 R 796027 CDS AWJ20_3819 30035882 complement(354966..356045) C 1 NC_031671.1 uncharacterized protein 356045 30035882 AWJ20_3819 Sugiyamaella lignohabitans uncharacterized protein XP_018733500.1 354966 R 796027 CDS AWJ20_3820 30035884 357300..360764 C 1 NC_031671.1 CORVET complex subunit VPS3 360764 VPS3 30035884 VPS3 Sugiyamaella lignohabitans CORVET complex subunit VPS3 XP_018733501.1 357300 D 796027 CDS AWJ20_3821 30035885 complement(360932..361576) C 1 NC_031671.1 uncharacterized protein 361576 30035885 AWJ20_3821 Sugiyamaella lignohabitans uncharacterized protein XP_018733502.1 360932 R 796027 CDS AWJ20_3822 30035886 362367..363341 C 1 NC_031671.1 Splicing factor and component of snRNP U5; factor involved in the positioning of the 3' splice site during the second catalytic step of splicing; interacts with Slu7p; GO_component: GO:0071021 - U2-type post-spliceosomal complex [Evidence IDA] [PMID 12212850]; GO_component: GO:0046540 - U4/U6 x U5 tri-snRNP complex [Evidence IDA] [PMID 8474454]; GO_component: GO:0005682 - U5 snRNP [Evidence IDA] [PMID 8474454]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005681 - spliceosomal complex [Evidence IEA,IEA]; GO_function: GO:0000386 - second spliceosomal transesterification activity [Evidence IDA] [PMID 12212850]; GO_function: GO:0000386 - second spliceosomal transesterification activity [Evidence IGI] [PMID 17626844]; GO_process: GO:0008380 - RNA splicing [Evidence IEA,IEA]; GO_process: GO:0000350 - generation of catalytic spliceosome for second transesterification step [Evidence IDA] [PMID 12212850]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0000398 - mRNA splicing, via spliceosome [Evidence IMP] [PMID 12403466]; GO_process: GO:0071048 - nuclear retention of unspliced pre-mRNA at the site of transcription [Evidence IGI,IMP] [PMID 14718167]; Prp18p 363341 PRP18 30035886 PRP18 Sugiyamaella lignohabitans Prp18p XP_018733503.1 362367 D 796027 CDS AWJ20_3823 30035887 complement(363718..364554) C 1 NC_031671.1 Cochaperone protein; regulates activity of adenylyl cyclase Cyr1p; involved in kinetochore complex assembly; associates with the SCF (Skp1p/Cdc53p/F box protein) ubiquitin ligase complex; acts as a linker between Skp1p and HSP90 complexes; protein abundance increases in response to DNA replication stress; GO_component: GO:0000151 - ubiquitin ligase complex [Evidence IDA] [PMID 10445024]; GO_function: GO:0051087 - chaperone binding [Evidence ISS] [PMID 12456005]; GO_function: GO:0051087 - chaperone binding [Evidence IDA] [PMID 16945921]; GO_function: GO:0030674 - protein binding, bridging [Evidence IDA] [PMID 16945921]; GO_process: GO:0019933 - cAMP-mediated signaling [Evidence IGI,IPI] [PMID 12456005]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051382 - kinetochore assembly [Evidence IDA] [PMID 10445024]; GO_process: GO:0006461 - protein complex assembly [Evidence IGI,ISS] [PMID 12456005]; GO_process: GO:0006461 - protein complex assembly [Evidence IDA] [PMID 15090617]; GO_process: GO:0016567 - protein ubiquitination [Evidence TAS] [PMID 12456005]; GO_process: GO:0051726 - regulation of cell cycle [Evidence TAS] [PMID 11847307]; Sgt1p 364554 SGT1 30035887 SGT1 Sugiyamaella lignohabitans Sgt1p XP_018733504.1 363718 R 796027 CDS AWJ20_3824 30035888 365586..367052 C 1 NC_031671.1 Protein involved in proteasomal and 40S ribosomal subunit biogenesis; required for cleavage of the 20S pre-rRNA to generate the mature 18S rRNA; cleavage is activated by Fun12p, a GTPase and translation initiation factor; relocalizes from nucleus to nucleolus upon DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 12588997]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA,IEA]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 12502737]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 12588997]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_component: GO:0030688 - preribosome, small subunit precursor [Evidence IDA] [PMID 12588997]; GO_function: GO:0004521 - endoribonuclease activity [Evidence IDA] [PMID 19801658]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004518 - nuclease activity [Evidence IEA]; GO_function: GO:0070181 - small ribosomal subunit rRNA binding [Evidence IDA] [PMID 19706509]; GO_process: GO:0030490 - maturation of SSU-rRNA [Evidence IDA] [PMID 19801658]; GO_process: GO:0000462 - maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IEP,IMP] [PMID 12588997]; GO_process: GO:0000462 - maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 15388878]; GO_process: GO:0090305 - nucleic acid phosphodiester bond hydrolysis [Evidence IEA]; GO_process: GO:0043248 - proteasome assembly [Evidence IMP,IPI] [PMID 12502737]; GO_process: GO:0042274 - ribosomal small subunit biogenesis [Evidence IDA] [PMID 12588997]; GO_process: GO:0042274 - ribosomal small subunit biogenesis [Evidence IPI] [PMID 12628929]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; Nob1p 367052 NOB1 30035888 NOB1 Sugiyamaella lignohabitans Nob1p XP_018733505.1 365586 D 796027 CDS AWJ20_3825 30035889 371591..372541 C 1 NC_031671.1 GTP-binding protein of the Ras superfamily; required for bud site selection, morphological changes in response to mating pheromone, and efficient cell fusion; localized to the plasma membrane; significantly similar to mammalian Rap GTPases; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 15282802]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 8723349]; GO_function: GO:0005525 - GTP binding [Evidence IEA,IEA]; GO_function: GO:0003924 - GTPase activity [Evidence IDA] [PMID 1910037]; GO_function: GO:0003924 - GTPase activity [Evidence TAS] [PMID 9759491]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0004871 - signal transducer activity [Evidence TAS] [PMID 9891811]; GO_process: GO:0006184 - GTP catabolic process [Evidence IEA]; GO_process: GO:0007120 - axial cellular bud site selection [Evidence TAS] [PMID 2065354]; GO_process: GO:0007120 - axial cellular bud site selection [Evidence TAS] [PMID 2690082]; GO_process: GO:0007121 - bipolar cellular bud site selection [Evidence TAS] [PMID 2065354]; GO_process: GO:0007121 - bipolar cellular bud site selection [Evidence TAS] [PMID 2690082]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0000282 - cellular bud site selection [Evidence TAS] [PMID 9759491]; GO_process: GO:0007165 - signal transduction [Evidence IEA]; GO_process: GO:0007264 - small GTPase mediated signal transduction [Evidence IEA]; GO_process: GO:0007264 - small GTPase mediated signal transduction [Evidence TAS] [PMID 9891811]; Ras family GTPase RSR1 372541 RSR1 30035889 RSR1 Sugiyamaella lignohabitans Ras family GTPase RSR1 XP_018733506.1 371591 D 796027 CDS AWJ20_3826 30035890 complement(373013..374818) C 1 NC_031671.1 methylcrotonoyl-CoA carboxylase beta chain, mitochondrial precursor 374818 30035890 AWJ20_3826 Sugiyamaella lignohabitans methylcrotonoyl-CoA carboxylase beta chain, mitochondrial precursor XP_018733507.1 373013 R 796027 CDS AWJ20_3827 30035891 375670..376845 C 1 NC_031671.1 Fungal Genetics Stock Center 12071; isovaleryl-CoA dehydrogenase, mitochondrial precursor 376845 30035891 AWJ20_3827 Sugiyamaella lignohabitans isovaleryl-CoA dehydrogenase, mitochondrial precursor XP_018733508.1 375670 D 796027 CDS AWJ20_3828 30035892 380125..383535 C 1 NC_031671.1 Member of an oxysterol-binding protein family with seven members; in S. cerevisiae, family members have overlapping, redundant functions in sterol metabolism and collectively perform a function essential for viability; OSH2 has a paralog, SWH1, that arose from the whole genome duplication; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 11408574]; GO_component: GO:0032541 - cortical endoplasmic reticulum [Evidence IDA] [PMID 20008566]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 12727870]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 11408574]; GO_function: GO:0005545 - 1-phosphatidylinositol binding [Evidence ISS] [PMID 11238399]; GO_function: GO:0008289 - lipid binding [Evidence IEA]; GO_function: GO:0008289 - lipid binding [Evidence IDA] [PMID 20008566]; GO_function: GO:0008142 - oxysterol binding [Evidence ISS] [PMID 11238399]; GO_function: GO:0015248 - sterol transporter activity [Evidence IDA] [PMID 20008566]; GO_process: GO:0035621 - ER to Golgi ceramide transport [Evidence IMP] [PMID 24213531]; GO_process: GO:0006897 - endocytosis [Evidence IGI] [PMID 15173322]; GO_process: GO:0006887 - exocytosis [Evidence IGI] [PMID 17004323]; GO_process: GO:0006869 - lipid transport [Evidence IEA]; GO_process: GO:0030011 - maintenance of cell polarity [Evidence IGI] [PMID 17004323]; GO_process: GO:0015918 - sterol transport [Evidence IGI] [PMID 16585271]; GO_process: GO:0015918 - sterol transport [Evidence IDA] [PMID 20008566]; GO_process: GO:0006810 - transport [Evidence IEA]; oxysterol-binding protein related protein OSH2 383535 OSH2 30035892 OSH2 Sugiyamaella lignohabitans oxysterol-binding protein related protein OSH2 XP_018733509.1 380125 D 796027 CDS AWJ20_3829 30035893 387080..388555 C 1 NC_031671.1 Ammonium permease of high capacity and low affinity; belongs to a ubiquitous family of cytoplasmic membrane proteins that transport only ammonium (NH4+); expression is under the nitrogen catabolite repression regulation ammonia permease; MEP3 has a paralog, MEP1, that arose from the whole genome duplication; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence TAS] [PMID 11486013]; GO_component: GO:0005886 - plasma membrane [Evidence ISS] [PMID 9234685]; GO_function: GO:0008519 - ammonium transmembrane transporter activity [Evidence IEA]; GO_function: GO:0008519 - ammonium transmembrane transporter activity [Evidence IDA,IMP,ISS] [PMID 9234685]; GO_process: GO:0072488 - ammonium transmembrane transport [Evidence IEA]; GO_process: GO:0015696 - ammonium transport [Evidence IEA,IEA]; GO_process: GO:0015696 - ammonium transport [Evidence IMP,ISS] [PMID 9234685]; GO_process: GO:0019740 - nitrogen utilization [Evidence IMP] [PMID 9234685]; GO_process: GO:0006810 - transport [Evidence IEA]; ammonium permease MEP3 388555 MEP3 30035893 MEP3 Sugiyamaella lignohabitans ammonium permease MEP3 XP_018733510.1 387080 D 796027 CDS AWJ20_3830 30035895 complement(389005..390252) C 1 NC_031671.1 COP9/signalosome complex subunit Csn2 390252 csn2 30035895 csn2 Sugiyamaella lignohabitans COP9/signalosome complex subunit Csn2 XP_018733511.1 389005 R 796027 CDS AWJ20_3831 30035896 complement(391496..394201) C 1 NC_031671.1 Mitochondrial leucyl-tRNA synthetase; also has a direct role in splicing of several mitochondrial group I introns; indirectly required for mitochondrial genome maintenance; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 1990003]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0002161 - aminoacyl-tRNA editing activity [Evidence IEA]; GO_function: GO:0004812 - aminoacyl-tRNA ligase activity [Evidence IEA,IEA]; GO_function: GO:0004823 - leucine-tRNA ligase activity [Evidence IEA,IEA]; GO_function: GO:0004823 - leucine-tRNA ligase activity [Evidence IDA] [PMID 1990003]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0003729 - mRNA binding [Evidence IPI] [PMID 11142386]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_process: GO:0000372 - Group I intron splicing [Evidence IMP] [PMID 12486008]; GO_process: GO:0000372 - Group I intron splicing [Evidence IMP] [PMID 2277640]; GO_process: GO:0006429 - leucyl-tRNA aminoacylation [Evidence IEA]; GO_process: GO:0006429 - leucyl-tRNA aminoacylation [Evidence IDA] [PMID 1990003]; GO_process: GO:0032543 - mitochondrial translation [Evidence IGI] [PMID 16777356]; GO_process: GO:0006450 - regulation of translational fidelity [Evidence IEA]; GO_process: GO:0006418 - tRNA aminoacylation for protein translation [Evidence IEA]; GO_process: GO:0006412 - translation [Evidence IEA]; leucine--tRNA ligase NAM2 394201 NAM2 30035896 NAM2 Sugiyamaella lignohabitans leucine--tRNA ligase NAM2 XP_018733512.1 391496 R 796027 CDS AWJ20_3832 30035897 396173..397399 C 1 NC_031671.1 Na+/H+ and K+/H+ exchanger; required for intracellular sequestration of Na+ and K+; located in the vacuole and late endosome compartments; required for osmotolerance to acute hypertonic shock and for vacuolar fusion; ortholog of human NHE9, which is linked to autism; GO_component: GO:0005769 - early endosome [Evidence IDA] [PMID 22210050]; GO_component: GO:0005768 - endosome [Evidence IEA]; GO_component: GO:0010008 - endosome membrane [Evidence IEA]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 20826459]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0005770 - late endosome [Evidence IDA] [PMID 20709757]; GO_component: GO:0005770 - late endosome [Evidence IDA] [PMID 22210050]; GO_component: GO:0005770 - late endosome [Evidence IDA] [PMID 9694857]; GO_component: GO:0031902 - late endosome membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005802 - trans-Golgi network [Evidence IDA] [PMID 22210050]; GO_function: GO:0015297 - antiporter activity [Evidence IEA]; GO_function: GO:0015386 - potassium:proton antiporter activity [Evidence IMP] [PMID 15635088]; GO_function: GO:0015385 - sodium:proton antiporter activity [Evidence IEA]; GO_function: GO:0015385 - sodium:proton antiporter activity [Evidence IMP] [PMID 10998367]; GO_function: GO:0015385 - sodium:proton antiporter activity [Evidence IMP] [PMID 15635088]; GO_function: GO:0015299 - solute:proton antiporter activity [Evidence IEA]; GO_process: GO:0006812 - cation transport [Evidence IEA]; GO_process: GO:0030004 - cellular monovalent inorganic cation homeostasis [Evidence IMP] [PMID 10589731]; GO_process: GO:1902600 - hydrogen ion transmembrane transport [Evidence IEA]; GO_process: GO:0006811 - ion transport [Evidence IEA]; GO_process: GO:0071805 - potassium ion transmembrane transport [Evidence IMP] [PMID 15635088]; GO_process: GO:0006813 - potassium ion transport [Evidence IEA]; GO_process: GO:0006885 - regulation of pH [Evidence IEA]; GO_process: GO:0035725 - sodium ion transmembrane transport [Evidence IMP] [PMID 10998367]; GO_process: GO:0035725 - sodium ion transmembrane transport [Evidence IMP] [PMID 15635088]; GO_process: GO:0006814 - sodium ion transport [Evidence IEA,IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0007035 - vacuolar acidification [Evidence IMP] [PMID 10589731]; bifunctional K:H/Na:H antiporter NHX1 397399 NHX1 30035897 NHX1 Sugiyamaella lignohabitans bifunctional K:H/Na:H antiporter NHX1 XP_018733513.1 396173 D 796027 CDS AWJ20_3833 30035898 399759..402416 C 1 NC_031671.1 Component of the SMC5-SMC6 complex; this complex plays a key role in the removal of X-shaped DNA structures that arise between sister chromatids during DNA replication and repair; homologous to S. pombe rad18; GO_component: GO:0030915 - Smc5-Smc6 complex [Evidence IEA]; GO_component: GO:0030915 - Smc5-Smc6 complex [Evidence IDA] [PMID 15738391]; GO_component: GO:0005694 - chromosome [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11927594]; GO_component: GO:0035861 - site of double-strand break [Evidence IDA] [PMID 16892052]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0019789 - SUMO ligase activity [Evidence IDA] [PMID 15738391]; GO_function: GO:0003684 - damaged DNA binding [Evidence IDA] [PMID 16793545]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006310 - DNA recombination [Evidence IEA]; GO_process: GO:0006281 - DNA repair [Evidence IEA,IEA]; GO_process: GO:0006281 - DNA repair [Evidence IDA] [PMID 11927594]; GO_process: GO:0006281 - DNA repair [Evidence IMP] [PMID 15738391]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0051304 - chromosome separation [Evidence IMP] [PMID 15793567]; GO_process: GO:0000724 - double-strand break repair via homologous recombination [Evidence IEA]; GO_process: GO:0000724 - double-strand break repair via homologous recombination [Evidence IMP] [PMID 16892052]; GO_process: GO:0071139 - resolution of recombination intermediates [Evidence IMP] [PMID 20159973]; DNA repair protein SMC6 402416 SMC6 30035898 SMC6 Sugiyamaella lignohabitans DNA repair protein SMC6 XP_018733514.1 399759 D 796027 CDS AWJ20_3834 30035899 402676..403341 C 1 NC_031671.1 Component of the SMC5-SMC6 complex; this complex plays a key role in the removal of X-shaped DNA structures that arise between sister chromatids during DNA replication and repair; homologous to S. pombe rad18; GO_component: GO:0030915 - Smc5-Smc6 complex [Evidence IEA]; GO_component: GO:0030915 - Smc5-Smc6 complex [Evidence IDA] [PMID 15738391]; GO_component: GO:0005694 - chromosome [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11927594]; GO_component: GO:0035861 - site of double-strand break [Evidence IDA] [PMID 16892052]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0019789 - SUMO ligase activity [Evidence IDA] [PMID 15738391]; GO_function: GO:0003684 - damaged DNA binding [Evidence IDA] [PMID 16793545]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006310 - DNA recombination [Evidence IEA]; GO_process: GO:0006281 - DNA repair [Evidence IEA,IEA]; GO_process: GO:0006281 - DNA repair [Evidence IDA] [PMID 11927594]; GO_process: GO:0006281 - DNA repair [Evidence IMP] [PMID 15738391]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0051304 - chromosome separation [Evidence IMP] [PMID 15793567]; GO_process: GO:0000724 - double-strand break repair via homologous recombination [Evidence IEA]; GO_process: GO:0000724 - double-strand break repair via homologous recombination [Evidence IMP] [PMID 16892052]; GO_process: GO:0071139 - resolution of recombination intermediates [Evidence IMP] [PMID 20159973]; DNA repair protein SMC6 403341 SMC6 30035899 SMC6 Sugiyamaella lignohabitans DNA repair protein SMC6 XP_018733515.1 402676 D 796027 CDS AWJ20_3835 30035900 complement(403435..405690) C 1 NC_031671.1 Essential protein involved in vesicle-mediated ER to Golgi transport; binds membranes and functions during vesicle docking to the Golgi; required for assembly of the ER-to-Golgi SNARE complex; GO_component: GO:0012507 - ER to Golgi transport vesicle membrane [Evidence IDA] [PMID 17192843]; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA,IEA]; GO_component: GO:0000139 - Golgi membrane [Evidence IDA] [PMID 17192843]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0031410 - cytoplasmic vesicle [Evidence IEA]; GO_component: GO:0030659 - cytoplasmic vesicle membrane [Evidence IEA]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA,IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0008565 - protein transporter activity [Evidence IEA]; GO_process: GO:0006888 - ER to Golgi vesicle-mediated transport [Evidence IMP] [PMID 8603910]; GO_process: GO:0048211 - Golgi vesicle docking [Evidence IDA] [PMID 9545229]; GO_process: GO:0048193 - Golgi vesicle transport [Evidence IEA]; GO_process: GO:0035493 - SNARE complex assembly [Evidence IMP] [PMID 8603910]; GO_process: GO:0006886 - intracellular protein transport [Evidence IEA]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0048280 - vesicle fusion with Golgi apparatus [Evidence IEA]; Uso1p 405690 USO1 30035900 USO1 Sugiyamaella lignohabitans Uso1p XP_018733516.1 403435 R 796027 CDS AWJ20_3836 30035901 complement(405732..407753) C 1 NC_031671.1 Essential protein involved in vesicle-mediated ER to Golgi transport; binds membranes and functions during vesicle docking to the Golgi; required for assembly of the ER-to-Golgi SNARE complex; GO_component: GO:0012507 - ER to Golgi transport vesicle membrane [Evidence IDA] [PMID 17192843]; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA,IEA]; GO_component: GO:0000139 - Golgi membrane [Evidence IDA] [PMID 17192843]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0031410 - cytoplasmic vesicle [Evidence IEA]; GO_component: GO:0030659 - cytoplasmic vesicle membrane [Evidence IEA]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA,IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0008565 - protein transporter activity [Evidence IEA]; GO_process: GO:0006888 - ER to Golgi vesicle-mediated transport [Evidence IMP] [PMID 8603910]; GO_process: GO:0048211 - Golgi vesicle docking [Evidence IDA] [PMID 9545229]; GO_process: GO:0048193 - Golgi vesicle transport [Evidence IEA]; GO_process: GO:0035493 - SNARE complex assembly [Evidence IMP] [PMID 8603910]; GO_process: GO:0006886 - intracellular protein transport [Evidence IEA]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0048280 - vesicle fusion with Golgi apparatus [Evidence IEA]; Uso1p 407753 USO1 30035901 USO1 Sugiyamaella lignohabitans Uso1p XP_018733517.1 405732 R 796027 CDS AWJ20_3837 30035902 412571..414010 C 1 NC_031671.1 uncharacterized protein 414010 30035902 AWJ20_3837 Sugiyamaella lignohabitans uncharacterized protein XP_018733518.1 412571 D 796027 CDS AWJ20_3838 30035903 complement(414180..420110) C 1 NC_031671.1 Component of the small-subunit (SSU) processome; SSU processome is involved in the biogenesis of the 18S rRNA; GO_component: GO:0030686 - 90S preribosome [Evidence IDA] [PMID 12150911]; GO_component: GO:0030686 - 90S preribosome [Evidence IDA] [PMID 17652137]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 17652137]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 15590835]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 17652137]; GO_component: GO:0005654 - nucleoplasm [Evidence IDA] [PMID 17652137]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0030688 - preribosome, small subunit precursor [Evidence IDA] [PMID 17652137]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0032040 - small-subunit processome [Evidence IDA] [PMID 15590835]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_process: GO:0000480 - endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 15590835]; GO_process: GO:0000480 - endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 17652137]; GO_process: GO:0000447 - endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 15590835]; GO_process: GO:0000447 - endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 17652137]; GO_process: GO:0000472 - endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 15590835]; GO_process: GO:0000472 - endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 17652137]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; Utp20p 420110 UTP20 30035903 UTP20 Sugiyamaella lignohabitans Utp20p XP_018733519.1 414180 R 796027 CDS AWJ20_3839 30035904 complement(420190..421350) C 1 NC_031671.1 uncharacterized protein 421350 30035904 AWJ20_3839 Sugiyamaella lignohabitans uncharacterized protein XP_018733520.1 420190 R 796027 CDS AWJ20_3840 30035906 complement(422530..424269) C 1 NC_031671.1 Major CTP synthase isozyme (see also URA8); catalyzes the ATP-dependent transfer of the amide nitrogen from glutamine to UTP, forming CTP, the final step in de novo biosynthesis of pyrimidines; involved in phospholipid biosynthesis; capable of forming cytoplasmic filaments termed cytoophidium, especially during conditions of glucose depletion; URA7 has a paralog, URA8, that arose from the whole genome duplication; GO_component: GO:0097268 - cytoophidium [Evidence IDA] [PMID 20713603]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0003883 - CTP synthase activity [Evidence IEA,IEA]; GO_function: GO:0003883 - CTP synthase activity [Evidence IMP,ISS] [PMID 1753946]; GO_function: GO:0003883 - CTP synthase activity [Evidence IDA] [PMID 8075080]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0044210 - 'de novo' CTP biosynthetic process [Evidence IEA]; GO_process: GO:0006241 - CTP biosynthetic process [Evidence IDA] [PMID 8075080]; GO_process: GO:0006541 - glutamine metabolic process [Evidence IEA]; GO_process: GO:0008654 - phospholipid biosynthetic process [Evidence IMP] [PMID 9668079]; GO_process: GO:0019856 - pyrimidine nucleobase biosynthetic process [Evidence IMP] [PMID 1753946]; GO_process: GO:0006221 - pyrimidine nucleotide biosynthetic process [Evidence IEA,IEA]; CTP synthase URA7 424269 URA7 30035906 URA7 Sugiyamaella lignohabitans CTP synthase URA7 XP_018733521.1 422530 R 796027 CDS AWJ20_3841 30035907 423019..423783 C 1 NC_031671.1 uncharacterized protein 423783 30035907 AWJ20_3841 Sugiyamaella lignohabitans uncharacterized protein XP_018733522.1 423019 D 796027 CDS AWJ20_3842 30035908 425685..426581 C 1 NC_031671.1 NADPH-dependent aldo-keto reductase; reduces multiple substrates including 2-methylbutyraldehyde and D,L-glyceraldehyde, expression is induced by osmotic and oxidative stress; functionally redundant with other aldo-keto reductases; protein abundance increases in response to DNA replication stress; YPR1 has a paralog, GCY1, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0004032 - alditol:NADP+ 1-oxidoreductase activity [Evidence IDA,ISS] [PMID 11306085]; GO_function: GO:0004090 - carbonyl reductase (NADPH) activity [Evidence IDA] [PMID 19016485]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_process: GO:0042843 - D-xylose catabolic process [Evidence IDA] [PMID 12271459]; GO_process: GO:0019568 - arabinose catabolic process [Evidence IDA,IMP] [PMID 12271459]; GO_process: GO:0034599 - cellular response to oxidative stress [Evidence IGI] [PMID 17919749]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; trifunctional aldehyde reductase/carbonyl reductase (NADPH)/glucose 1-dehydrogenase (NADP(+)) YPR1 426581 YPR1 30035908 YPR1 Sugiyamaella lignohabitans trifunctional aldehyde reductase/carbonyl reductase (NADPH)/glucose 1-dehydrogenase (NADP(+)) YPR1 XP_018733523.1 425685 D 796027 CDS AWJ20_3843 30035909 427253..428629 C 1 NC_031671.1 Cytoplasmic protein required for sporulation; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0007126 - meiotic nuclear division [Evidence IEA]; GO_process: GO:0030435 - sporulation resulting in formation of a cellular spore [Evidence IEA]; Rmd1p 428629 RMD1 30035909 RMD1 Sugiyamaella lignohabitans Rmd1p XP_018733524.1 427253 D 796027 CDS AWJ20_3844 30035910 434804..436258 C 1 NC_031671.1 uncharacterized protein 436258 30035910 AWJ20_3844 Sugiyamaella lignohabitans uncharacterized protein XP_018733525.1 434804 D 796027 CDS AWJ20_3845 30035911 complement(437248..439506) C 1 NC_031671.1 F-box protein required for both the G1/S and G2/M phase transitions; modular substrate specificity factor which associates with core SCF (Cdc53p, Skp1p and Hrt1p/Rbx1p) to form the SCFCdc4 complex; SCFCdc4 acts as a ubiquitin-protein ligase directing ubiquitination of cyclin-dependent kinase (CDK) phosphorylated substrates, such as: Sic1p, Far1p, Cdc6p, Clb6p, and Cln3p; GO_component: GO:0019005 - SCF ubiquitin ligase complex [Evidence IDA,IPI] [PMID 9346238]; GO_component: GO:0019005 - SCF ubiquitin ligase complex [Evidence IDA,IPI] [PMID 9346239]; GO_component: GO:0043224 - nuclear SCF ubiquitin ligase complex [Evidence IDA] [PMID 11080155]; GO_component: GO:0016363 - nuclear matrix [Evidence IDA] [PMID 2244914]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11080155]; GO_function: GO:0050815 - phosphoserine binding [Evidence IDA] [PMID 23314252]; GO_function: GO:0043130 - ubiquitin binding [Evidence IDA] [PMID 21070969]; GO_function: GO:0061630 - ubiquitin protein ligase activity [Evidence IDA] [PMID 9346238]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence IDA] [PMID 9346239]; GO_process: GO:0000082 - G1/S transition of mitotic cell cycle [Evidence IMP] [PMID 10409741]; GO_process: GO:0000086 - G2/M transition of mitotic cell cycle [Evidence IGI,IMP] [PMID 10409741]; GO_process: GO:0000086 - G2/M transition of mitotic cell cycle [Evidence IGI] [PMID 7954792]; GO_process: GO:0031146 - SCF-dependent proteasomal ubiquitin-dependent protein catabolic process [Evidence IDA] [PMID 9346238]; GO_process: GO:0031146 - SCF-dependent proteasomal ubiquitin-dependent protein catabolic process [Evidence IDA] [PMID 9346239]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0007126 - meiotic nuclear division [Evidence IMP] [PMID 328339]; GO_process: GO:0007067 - mitotic nuclear division [Evidence IEA]; GO_process: GO:0016567 - protein ubiquitination [Evidence IEA]; GO_process: GO:0042787 - protein ubiquitination involved in ubiquitin-dependent protein catabolic process [Evidence IDA] [PMID 9346238]; GO_process: GO:0042787 - protein ubiquitination involved in ubiquitin-dependent protein catabolic process [Evidence IDA] [PMID 9346239]; GO_process: GO:0030435 - sporulation resulting in formation of a cellular spore [Evidence IEA]; SCF ubiquitin ligase complex subunit CDC4 439506 CDC4 30035911 CDC4 Sugiyamaella lignohabitans SCF ubiquitin ligase complex subunit CDC4 XP_018733526.1 437248 R 796027 CDS AWJ20_3846 30035912 442775..443782 C 1 NC_031671.1 uncharacterized protein 443782 30035912 AWJ20_3846 Sugiyamaella lignohabitans uncharacterized protein XP_018733527.1 442775 D 796027 CDS AWJ20_3847 30035913 447425..448225 C 1 NC_031671.1 Protein involved in apoptosis; variously described as containing a BCL-2 homology (BH3) domain or as a member of the BAX inhibitor family; reported to promote apoptosis under some conditions and to inhibit it in others; localizes to ER and vacuole; may link the unfolded protein response to apoptosis via regulation of calcium-mediated signaling; translocates to mitochondria under apoptosis-inducing conditions in a process involving Mir1p and Cor1p; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 21673967]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0000324 - fungal-type vacuole [Evidence IDA] [PMID 14562095]; GO_component: GO:0000324 - fungal-type vacuole [Evidence IDA] [PMID 21673659]; GO_component: GO:0000324 - fungal-type vacuole [Evidence IDA] [PMID 21673967]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0031966 - mitochondrial membrane [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 21673659]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006915 - apoptotic process [Evidence IEA]; GO_process: GO:0006915 - apoptotic process [Evidence IMP] [PMID 21673659]; GO_process: GO:0006915 - apoptotic process [Evidence IMP] [PMID 21673967]; GO_process: GO:0019722 - calcium-mediated signaling [Evidence IMP] [PMID 21673967]; GO_process: GO:0030968 - endoplasmic reticulum unfolded protein response [Evidence IMP] [PMID 21673967]; Bxi1p 448225 BXI1 30035913 BXI1 Sugiyamaella lignohabitans Bxi1p XP_018733528.1 447425 D 796027 CDS AWJ20_3848 30035914 complement(448477..450570) C 1 NC_031671.1 acid phosphatase PHO11 450570 PHO11 30035914 PHO11 Sugiyamaella lignohabitans acid phosphatase PHO11 XP_018733529.1 448477 R 796027 CDS AWJ20_3849 30035915 complement(451234..452847) C 1 NC_031671.1 uncharacterized protein 452847 30035915 AWJ20_3849 Sugiyamaella lignohabitans uncharacterized protein XP_018733530.1 451234 R 796027 CDS AWJ20_3850 30035917 complement(453209..455224) C 1 NC_031671.1 Peptide-N4-(N-acetyl-beta- glucosaminyl)asparagineamidase A 455224 30035917 AWJ20_3850 Sugiyamaella lignohabitans Peptide-N4-(N-acetyl-beta- glucosaminyl)asparagineamidase A XP_018733531.1 453209 R 796027 CDS AWJ20_3851 30035918 455956..456753 C 1 NC_031671.1 Orotidine-5'-phosphate (OMP) decarboxylase; catalyzes the sixth enzymatic step in the de novo biosynthesis of pyrimidines, converting OMP into uridine monophosphate (UMP); converts 5-FOA into 5-fluorouracil, a toxic compound; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 18812321]; GO_function: GO:0016831 - carboxy-lyase activity [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016829 - lyase activity [Evidence IEA]; GO_function: GO:0004590 - orotidine-5'-phosphate decarboxylase activity [Evidence IEA,IEA]; GO_function: GO:0004590 - orotidine-5'-phosphate decarboxylase activity [Evidence IDA] [PMID 2061334]; GO_function: GO:0004590 - orotidine-5'-phosphate decarboxylase activity [Evidence IMP] [PMID 4550660]; GO_function: GO:0004590 - orotidine-5'-phosphate decarboxylase activity [Evidence IMP] [PMID 5651325]; GO_process: GO:0044205 - 'de novo' UMP biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0006207 - 'de novo' pyrimidine nucleobase biosynthetic process [Evidence IEA]; GO_process: GO:0006207 - 'de novo' pyrimidine nucleobase biosynthetic process [Evidence IMP] [PMID 4550660]; GO_process: GO:0006207 - 'de novo' pyrimidine nucleobase biosynthetic process [Evidence IMP] [PMID 5651325]; GO_process: GO:0006222 - UMP biosynthetic process [Evidence IDA] [PMID 2061334]; GO_process: GO:0006222 - UMP biosynthetic process [Evidence IMP] [PMID 4550660]; GO_process: GO:0006222 - UMP biosynthetic process [Evidence IMP] [PMID 5651325]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0006221 - pyrimidine nucleotide biosynthetic process [Evidence IEA]; orotidine-5'-phosphate decarboxylase 456753 URA3 30035918 URA3 Sugiyamaella lignohabitans orotidine-5'-phosphate decarboxylase XP_018733532.1 455956 D 796027 CDS AWJ20_3852 30035919 complement(458453..460072) C 1 NC_031671.1 RNA-Dependent ATPase, member of DExD/H-box family; involved in cleavage of site A3 within the ITS1 spacer during rRNA processing; not essential for growth, but deletion causes severe slow-growth phenotype; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 9032262]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 22083961]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004004 - ATP-dependent RNA helicase activity [Evidence IDA] [PMID 23153376]; GO_function: GO:0008026 - ATP-dependent helicase activity [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0008186 - RNA-dependent ATPase activity [Evidence IDA] [PMID 18975973]; GO_function: GO:0008186 - RNA-dependent ATPase activity [Evidence IDA] [PMID 23153376]; GO_function: GO:0004386 - helicase activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0000464 - endonucleolytic cleavage in ITS1 upstream of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 9032262]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; RNA-dependent ATPase DBP3 460072 DBP3 30035919 DBP3 Sugiyamaella lignohabitans RNA-dependent ATPase DBP3 XP_018733533.1 458453 R 796027 CDS AWJ20_3853 30035920 461851..463677 C 1 NC_031671.1 Thiol oxidase required for oxidative protein folding in the ER; essential for maintaining proper redox balance in ER; feedback regulation of Ero1p occurs via reduction and oxidation of Ero1p regulatory bonds; reduced Pdi1p activates Ero1p by direct reduction of Ero1p regulatory bonds; depletion of thiol substrates and accumulation of oxidized Pdi1p results in inactivation of Ero1p by both Pdi1p-mediated oxidation and autonomous oxidation of Ero1p regulatory bonds; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA,IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 9659914]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0016671 - oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor [Evidence IEA]; GO_function: GO:0003756 - protein disulfide isomerase activity [Evidence IEA]; GO_function: GO:0003756 - protein disulfide isomerase activity [Evidence IMP] [PMID 10982384]; GO_function: GO:0016972 - thiol oxidase activity [Evidence IDA] [PMID 16407158]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IGI] [PMID 11584268]; GO_process: GO:0006457 - protein folding [Evidence IMP] [PMID 9659913]; Ero1p 463677 ERO1 30035920 ERO1 Sugiyamaella lignohabitans Ero1p XP_018733534.1 461851 D 796027 CDS AWJ20_3854 30035921 complement(464898..465311) C 1 NC_031671.1 Probable subtilisin-family protease; role in formation of the dityrosine layer of spore walls; localizes to the spore wall and also the nuclear envelope and ER region in mature spores; GO_component: GO:0005619 - ascospore wall [Evidence IDA] [PMID 19779569]; GO_component: GO:0005635 - nuclear envelope [Evidence IDA] [PMID 19779569]; GO_component: GO:0031160 - spore wall [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0042802 - identical protein binding [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_function: GO:0004252 - serine-type endopeptidase activity [Evidence IBA,IEA]; GO_function: GO:0008236 - serine-type peptidase activity [Evidence IEA]; GO_function: GO:0008236 - serine-type peptidase activity [Evidence ISS] [PMID 10592175]; GO_process: GO:0030476 - ascospore wall assembly [Evidence IMP] [PMID 19779569]; GO_process: GO:0043086 - negative regulation of catalytic activity [Evidence IEA]; GO_process: GO:0006508 - proteolysis [Evidence IBA,IEA,IEA]; GO_process: GO:0030435 - sporulation resulting in formation of a cellular spore [Evidence IEA]; Rrt12p 465311 RRT12 30035921 RRT12 Sugiyamaella lignohabitans Rrt12p XP_018733535.1 464898 R 796027 CDS AWJ20_3855 30035922 complement(466442..467893) C 1 NC_031671.1 Peptidyl-prolyl cis/trans-isomerase; activator of the phosphotyrosyl phosphatase activity of PP2A; involved in G1 phase progression, microtubule dynamics, bud morphogenesis and DNA repair; required for rapid reduction of Sgs1p levels in response to rapamycin; subunit of the Tap42p-Sit4p-Rrd1p complex; protein increases in abundance and relative distribution to the nucleus increases upon DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 15150670]; GO_component: GO:0000790 - nuclear chromatin [Evidence IDA] [PMID 21129186]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 15150670]; GO_function: GO:0016853 - isomerase activity [Evidence IEA]; GO_function: GO:0003755 - peptidyl-prolyl cis-trans isomerase activity [Evidence IEA,IEA]; GO_function: GO:0003755 - peptidyl-prolyl cis-trans isomerase activity [Evidence IDA] [PMID 16380387]; GO_function: GO:0019211 - phosphatase activator activity [Evidence IEA]; GO_function: GO:0008601 - protein phosphatase type 2A regulator activity [Evidence IMP] [PMID 12952889]; GO_process: GO:0006281 - DNA repair [Evidence IMP] [PMID 15150670]; GO_process: GO:0006281 - DNA repair [Evidence IMP] [PMID 9705277]; GO_process: GO:0000082 - G1/S transition of mitotic cell cycle [Evidence IPI] [PMID 11134337]; GO_process: GO:0030472 - mitotic spindle organization in nucleus [Evidence IMP] [PMID 11262194]; GO_process: GO:0043085 - positive regulation of catalytic activity [Evidence IEA]; GO_process: GO:0006457 - protein folding [Evidence IEA]; GO_process: GO:0000413 - protein peptidyl-prolyl isomerization [Evidence IEA,IEA]; GO_process: GO:0043618 - regulation of transcription from RNA polymerase II promoter in response to stress [Evidence IMP,IPI] [PMID 21129186]; GO_process: GO:0006970 - response to osmotic stress [Evidence IMP] [PMID 10660069]; peptidylprolyl isomerase RRD1 467893 RRD1 30035922 RRD1 Sugiyamaella lignohabitans peptidylprolyl isomerase RRD1 XP_018733536.1 466442 R 796027 CDS AWJ20_3856 30035923 468646..473577 C 1 NC_031671.1 Essential subunit of the inner ring of the nuclear pore complex (NPC); contributes to nucleocytoplasmic transport; homologous to human NUP205; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0031965 - nuclear membrane [Evidence IEA]; GO_component: GO:0005643 - nuclear pore [Evidence IEA,IEA,IEA]; GO_component: GO:0005643 - nuclear pore [Evidence IDA] [PMID 10684247]; GO_component: GO:0044611 - nuclear pore inner ring [Evidence IDA] [PMID 18046406]; GO_component: GO:0044615 - nuclear pore nuclear basket [Evidence IDA] [PMID 10428845]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_function: GO:0017056 - structural constituent of nuclear pore [Evidence IMP] [PMID 10428845]; GO_process: GO:0051028 - mRNA transport [Evidence IEA]; GO_process: GO:0006999 - nuclear pore organization [Evidence IMP] [PMID 10428845]; GO_process: GO:0006999 - nuclear pore organization [Evidence IMP] [PMID 11121302]; GO_process: GO:0006913 - nucleocytoplasmic transport [Evidence IC] [PMID 10684247]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Nup192p 473577 NUP192 30035923 NUP192 Sugiyamaella lignohabitans Nup192p XP_018733537.1 468646 D 796027 CDS AWJ20_3857 30035924 complement(join(473749..475815,476488..476502)) C 1 NC_031671.1 FG-nucleoporin NSP1 476502 NSP1 30035924 NSP1 Sugiyamaella lignohabitans FG-nucleoporin NSP1 XP_018733538.1 473749 R 796027 CDS AWJ20_3858 30035925 477310..480333 C 1 NC_031671.1 P subunit of the mitochondrial glycine decarboxylase complex; glycine decarboxylase is required for the catabolism of glycine to 5,10-methylene-THF; expression is regulated by levels of 5,10-methylene-THF in the cytoplasm; GO_component: GO:0005960 - glycine cleavage complex [Evidence ISS] [PMID 8830251]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0004375 - glycine dehydrogenase (decarboxylating) activity [Evidence IEA,IEA]; GO_function: GO:0004375 - glycine dehydrogenase (decarboxylating) activity [Evidence IDA] [PMID 320197]; GO_function: GO:0004375 - glycine dehydrogenase (decarboxylating) activity [Evidence IDA] [PMID 8830251]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0030170 - pyridoxal phosphate binding [Evidence IEA]; GO_process: GO:0006546 - glycine catabolic process [Evidence IEA]; GO_process: GO:0019464 - glycine decarboxylation via glycine cleavage system [Evidence IEP,IMP] [PMID 8830251]; GO_process: GO:0006544 - glycine metabolic process [Evidence IEA]; GO_process: GO:0006730 - one-carbon metabolic process [Evidence IGI] [PMID 10871621]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; glycine decarboxylase subunit P 480333 GCV2 30035925 GCV2 Sugiyamaella lignohabitans glycine decarboxylase subunit P XP_018733539.1 477310 D 796027 CDS AWJ20_3859 30035926 482919..483815 C 1 NC_031671.1 2'-O-ribose methyltransferase; methylates the 2'-O-ribose of tRNA-Phe, tRNA-Trp, and tRNA-Leu at positions C32 and N34 of the tRNA anticodon loop; crucial biological role likely modification of tRNA-Phe; interacts with Trm732p and Rtt10p in 2'-O-methylation of C32 and N34 substrate tRNAs, respectively; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11927565]; GO_function: GO:0008168 - methyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0008175 - tRNA methyltransferase activity [Evidence IEA]; GO_function: GO:0008175 - tRNA methyltransferase activity [Evidence IDA] [PMID 11927565]; GO_function: GO:0008175 - tRNA methyltransferase activity [Evidence IMP,ISS] [PMID 9917067]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0001510 - RNA methylation [Evidence IEA]; GO_process: GO:0002181 - cytoplasmic translation [Evidence IMP] [PMID 11927565]; GO_process: GO:0032259 - methylation [Evidence IEA,IEA]; GO_process: GO:0030488 - tRNA methylation [Evidence IDA] [PMID 11927565]; GO_process: GO:0008033 - tRNA processing [Evidence IEA,IEA]; Trm7p 483815 TRM7 30035926 TRM7 Sugiyamaella lignohabitans Trm7p XP_018733540.1 482919 D 796027 CDS AWJ20_3860 30035928 complement(484050..485798) C 1 NC_031671.1 Lysyl-tRNA synthetase; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 330225]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004812 - aminoacyl-tRNA ligase activity [Evidence IEA,IEA]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0004824 - lysine-tRNA ligase activity [Evidence IEA,IEA]; GO_function: GO:0004824 - lysine-tRNA ligase activity [Evidence IDA] [PMID 3888626]; GO_function: GO:0004824 - lysine-tRNA ligase activity [Evidence IMP] [PMID 7628447]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_process: GO:0006430 - lysyl-tRNA aminoacylation [Evidence IEA]; GO_process: GO:0006430 - lysyl-tRNA aminoacylation [Evidence IDA] [PMID 3888626]; GO_process: GO:0006430 - lysyl-tRNA aminoacylation [Evidence IMP] [PMID 7628447]; GO_process: GO:0006418 - tRNA aminoacylation for protein translation [Evidence IEA]; GO_process: GO:0006412 - translation [Evidence IEA]; lysine--tRNA ligase KRS1 485798 KRS1 30035928 KRS1 Sugiyamaella lignohabitans lysine--tRNA ligase KRS1 XP_018733541.1 484050 R 796027 CDS AWJ20_3861 30035929 486426..487697 C 1 NC_031671.1 TFIIF (Transcription Factor II) middle subunit; involved in both transcription initiation and elongation of RNA polymerase II; homologous to human RAP30; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005674 - transcription factor TFIIF complex [Evidence IEA]; GO_component: GO:0005674 - transcription factor TFIIF complex [Evidence IDA] [PMID 12242279]; GO_component: GO:0005674 - transcription factor TFIIF complex [Evidence IDA] [PMID 7995524]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0000991 - core RNA polymerase II binding transcription factor activity [Evidence IDA] [PMID 14749386]; GO_function: GO:0001139 - core RNA polymerase II recruiting transcription factor activity [Evidence IC] [PMID 7995524]; GO_function: GO:0004386 - helicase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0051123 - RNA polymerase II transcriptional preinitiation complex assembly [Evidence IC] [PMID 7995524]; GO_process: GO:0001111 - promoter clearance from RNA polymerase II promoter [Evidence IC] [PMID 7995524]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006368 - transcription elongation from RNA polymerase II promoter [Evidence IDA] [PMID 18362165]; GO_process: GO:0006367 - transcription initiation from RNA polymerase II promoter [Evidence IEA]; GO_process: GO:0006367 - transcription initiation from RNA polymerase II promoter [Evidence IDA] [PMID 1331084]; GO_process: GO:0006367 - transcription initiation from RNA polymerase II promoter [Evidence IDA] [PMID 18362165]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; GO_process: GO:0001174 - transcriptional start site selection at RNA polymerase II promoter [Evidence IMP] [PMID 15572698]; GO_process: GO:0001174 - transcriptional start site selection at RNA polymerase II promoter [Evidence IMP] [PMID 20033062]; transcription factor IIF subunit TFG2 487697 TFG2 30035929 TFG2 Sugiyamaella lignohabitans transcription factor IIF subunit TFG2 XP_018733542.1 486426 D 796027 CDS AWJ20_3862 30035930 490103..491218 C 1 NC_031671.1 AraC family transcriptional regulator 491218 30035930 AWJ20_3862 Sugiyamaella lignohabitans AraC family transcriptional regulator XP_018733543.1 490103 D 796027 CDS AWJ20_3863 30035931 491935..493533 C 1 NC_031671.1 uncharacterized protein 493533 30035931 AWJ20_3863 Sugiyamaella lignohabitans uncharacterized protein XP_018733544.1 491935 D 796027 CDS AWJ20_3864 30035932 494277..496028 C 1 NC_031671.1 serine/threonine protein kinase KIN3 496028 KIN3 30035932 KIN3 Sugiyamaella lignohabitans serine/threonine protein kinase KIN3 XP_018733545.1 494277 D 796027 CDS AWJ20_3865 30035933 complement(496266..497540) C 1 NC_031671.1 Actin; structural protein involved in cell polarization, endocytosis, and other cytoskeletal functions; GO_component: GO:0031011 - Ino80 complex [Evidence IPI] [PMID 10952318]; GO_component: GO:0031011 - Ino80 complex [Evidence IPI] [PMID 24034245]; GO_component: GO:0035267 - NuA4 histone acetyltransferase complex [Evidence IDA] [PMID 10911987]; GO_component: GO:0035267 - NuA4 histone acetyltransferase complex [Evidence IPI] [PMID 15485911]; GO_component: GO:0000812 - Swr1 complex [Evidence IDA] [PMID 14645854]; GO_component: GO:0000812 - Swr1 complex [Evidence IDA] [PMID 14690608]; GO_component: GO:0000812 - Swr1 complex [Evidence IDA] [PMID 16299513]; GO_component: GO:0030479 - actin cortical patch [Evidence IDA] [PMID 3967297]; GO_component: GO:0030479 - actin cortical patch [Evidence IDA] [PMID 6365930]; GO_component: GO:0030479 - actin cortical patch [Evidence IDA] [PMID 8163554]; GO_component: GO:0005884 - actin filament [Evidence IDA] [PMID 6217414]; GO_component: GO:0032432 - actin filament bundle [Evidence IDA] [PMID 3967297]; GO_component: GO:0032432 - actin filament bundle [Evidence IDA] [PMID 6365930]; GO_component: GO:0032432 - actin filament bundle [Evidence IDA] [PMID 8163554]; GO_component: GO:0000142 - cellular bud neck contractile ring [Evidence IDA] [PMID 3967297]; GO_component: GO:0000142 - cellular bud neck contractile ring [Evidence IDA] [PMID 8163554]; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA,IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0004402 - histone acetyltransferase activity [Evidence IDA] [PMID 10911987]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0005200 - structural constituent of cytoskeleton [Evidence IDA] [PMID 6217414]; GO_process: GO:0006281 - DNA repair [Evidence IDA] [PMID 16135807]; GO_process: GO:0000916 - actomyosin contractile ring contraction [Evidence IDA,IMP] [PMID 9732290]; GO_process: GO:0030476 - ascospore wall assembly [Evidence IDA] [PMID 17118118]; GO_process: GO:0007119 - budding cell isotropic bud growth [Evidence TAS] [PMID 10652251]; GO_process: GO:0034599 - cellular response to oxidative stress [Evidence IGI] [PMID 17287397]; GO_process: GO:0001300 - chronological cell aging [Evidence IMP] [PMID 15024029]; GO_process: GO:0006897 - endocytosis [Evidence IMP] [PMID 8590801]; GO_process: GO:0030010 - establishment of cell polarity [Evidence IGI] [PMID 9864365]; GO_process: GO:0000132 - establishment of mitotic spindle orientation [Evidence TAS] [PMID 10652251]; GO_process: GO:0006887 - exocytosis [Evidence TAS] [PMID 10652251]; GO_process: GO:0031505 - fungal-type cell wall organization [Evidence TAS] [PMID 10652251]; GO_process: GO:0016573 - histone acetylation [Evidence IDA] [PMID 10911987]; GO_process: GO:0000001 - mitochondrion inheritance [Evidence TAS] [PMID 10652251]; GO_process: GO:0009306 - protein secretion [Evidence IGI,IMP] [PMID 10793147]; GO_process: GO:0000011 - vacuole inheritance [Evidence IGI,IMP] [PMID 8978821]; GO_process: GO:0030050 - vesicle transport along actin filament [Evidence TAS] [PMID 10652251]; actin 497540 ACT1 30035933 ACT1 Sugiyamaella lignohabitans actin XP_018733546.1 496266 R 796027 CDS AWJ20_3866 30035934 498378..500636 C 1 NC_031671.1 eIF3b subunit of the eukaryotic translation initiation factor 3 (eIF3); subunit of the core complex of eIF3; essential for translation; part of a subcomplex (Prt1p-Rpg1p-Nip1p) that stimulates binding of mRNA and tRNA(i)Met to ribosomes; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IPI] [PMID 9722586]; GO_component: GO:0010494 - cytoplasmic stress granule [Evidence IDA] [PMID 19470581]; GO_component: GO:0016282 - eukaryotic 43S preinitiation complex [Evidence IEA]; GO_component: GO:0033290 - eukaryotic 48S preinitiation complex [Evidence IEA]; GO_component: GO:0033290 - eukaryotic 48S preinitiation complex [Evidence IDA] [PMID 17242201]; GO_component: GO:0005852 - eukaryotic translation initiation factor 3 complex [Evidence IEA,IEA]; GO_component: GO:0005852 - eukaryotic translation initiation factor 3 complex [Evidence IDA,IPI] [PMID 9660829]; GO_component: GO:0005852 - eukaryotic translation initiation factor 3 complex [Evidence IDA,IPI] [PMID 9671501]; GO_component: GO:0043614 - multi-eIF complex [Evidence IDA] [PMID 11018020]; GO_component: GO:0043614 - multi-eIF complex [Evidence IDA] [PMID 15838098]; GO_function: GO:0003723 - RNA binding [Evidence IEA,IEA,IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0003743 - translation initiation factor activity [Evidence IEA,IEA,IEA]; GO_function: GO:0003743 - translation initiation factor activity [Evidence IDA,IPI,ISS] [PMID 7876188]; GO_function: GO:0003743 - translation initiation factor activity [Evidence IDA] [PMID 9671501]; GO_function: GO:0031369 - translation initiation factor binding [Evidence IEA]; GO_process: GO:0001731 - formation of translation preinitiation complex [Evidence IEA]; GO_process: GO:0006446 - regulation of translational initiation [Evidence IEA]; GO_process: GO:0006412 - translation [Evidence IEA]; GO_process: GO:0006413 - translational initiation [Evidence IEA,IEA,IEA]; GO_process: GO:0006413 - translational initiation [Evidence IMP] [PMID 3029094]; GO_process: GO:0006413 - translational initiation [Evidence IDA] [PMID 9671501]; Prt1p 500636 PRT1 30035934 PRT1 Sugiyamaella lignohabitans Prt1p XP_018733547.1 498378 D 796027 CDS AWJ20_3867 30035935 complement(504870..505979) C 1 NC_031671.1 Inosine monophosphate dehydrogenase; catalyzes the rate-limiting step in the de novo synthesis of GTP; member of a four-gene family in S. cerevisiae, constitutively expressed; IMD4 has a paralog, IMD3, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 23222640]; GO_function: GO:0003938 - IMP dehydrogenase activity [Evidence IEA,IEA,IEA]; GO_function: GO:0003938 - IMP dehydrogenase activity [Evidence ISS] [PMID 11003640]; GO_function: GO:0030554 - adenyl nucleotide binding [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_function: GO:0046872 - metal ion binding [Evidence IEA,IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_process: GO:0006177 - GMP biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0006164 - purine nucleotide biosynthetic process [Evidence IEA,IEA]; IMP dehydrogenase IMD4 505979 IMD4 30035935 IMD4 Sugiyamaella lignohabitans IMP dehydrogenase IMD4 XP_018733548.1 504870 R 796027 CDS AWJ20_3868 30035936 complement(506268..506783) C 1 NC_031671.1 Inosine monophosphate dehydrogenase; catalyzes the rate-limiting step in the de novo synthesis of GTP; member of a four-gene family in S. cerevisiae, constitutively expressed; IMD4 has a paralog, IMD3, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 23222640]; GO_function: GO:0003938 - IMP dehydrogenase activity [Evidence IEA,IEA,IEA]; GO_function: GO:0003938 - IMP dehydrogenase activity [Evidence ISS] [PMID 11003640]; GO_function: GO:0030554 - adenyl nucleotide binding [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_function: GO:0046872 - metal ion binding [Evidence IEA,IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_process: GO:0006177 - GMP biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0006164 - purine nucleotide biosynthetic process [Evidence IEA,IEA]; IMP dehydrogenase IMD4 506783 IMD4 30035936 IMD4 Sugiyamaella lignohabitans IMP dehydrogenase IMD4 XP_018733549.1 506268 R 796027 CDS AWJ20_3869 30035937 complement(507742..508815) C 1 NC_031671.1 proteinase A 508815 PEP4 30035937 PEP4 Sugiyamaella lignohabitans proteinase A XP_018733550.1 507742 R 796027 CDS AWJ20_3870 30035939 complement(512551..514062) C 1 NC_031671.1 ser/thr/tyr protein kinase RAD53 514062 30035939 AWJ20_3870 Sugiyamaella lignohabitans ser/thr/tyr protein kinase RAD53 XP_018733551.1 512551 R 796027 CDS AWJ20_3871 30035940 join(517514..517627,518288..519562) C 1 NC_031671.1 uncharacterized protein 519562 30035940 AWJ20_3871 Sugiyamaella lignohabitans uncharacterized protein XP_018733552.1 517514 D 796027 CDS AWJ20_3872 30035941 complement(518294..519583) C 1 NC_031671.1 putative spidroin-1-like 519583 30035941 AWJ20_3872 Sugiyamaella lignohabitans putative spidroin-1-like XP_018733553.1 518294 R 796027 CDS AWJ20_3873 30035942 complement(521620..522333) C 1 NC_031671.1 uncharacterized protein 522333 30035942 AWJ20_3873 Sugiyamaella lignohabitans uncharacterized protein XP_018733554.1 521620 R 796027 CDS AWJ20_3874 30035943 521975..522265 C 1 NC_031671.1 uncharacterized protein 522265 30035943 AWJ20_3874 Sugiyamaella lignohabitans uncharacterized protein XP_018733555.1 521975 D 796027 CDS AWJ20_3875 30035944 525204..526226 C 1 NC_031671.1 Mitochondrial intermembrane space hypothetical protein; GO_component: GO:0019898 - extrinsic component of membrane [Evidence IDA] [PMID 11791739]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IDA] [PMID 22984289]; GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IDA] [PMID 22993211]; GO_component: GO:0031966 - mitochondrial membrane [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 11791739]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 9874242]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; Mpm1p 526226 MPM1 30035944 MPM1 Sugiyamaella lignohabitans Mpm1p XP_018733556.1 525204 D 796027 CDS AWJ20_3876 30035945 527614..528468 C 1 NC_031671.1 Regulatory subunit of protein phosphatase 1 (Glc7p); involved in glycogen metabolism and chromosome segregation; proposed to regulate Glc7p activity via conformational alteration; ortholog of the mammalian protein phosphatase inhibitor 2; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0008047 - enzyme activator activity [Evidence IDA] [PMID 12127071]; GO_function: GO:0004864 - protein phosphatase inhibitor activity [Evidence IEA]; GO_process: GO:0005975 - carbohydrate metabolic process [Evidence IEA]; GO_process: GO:0007059 - chromosome segregation [Evidence IMP] [PMID 7565759]; GO_process: GO:0005978 - glycogen biosynthetic process [Evidence TAS] [PMID 9584086]; GO_process: GO:0005977 - glycogen metabolic process [Evidence IEA]; GO_process: GO:0043086 - negative regulation of catalytic activity [Evidence IEA]; GO_process: GO:0043666 - regulation of phosphoprotein phosphatase activity [Evidence IEA]; GO_process: GO:0009966 - regulation of signal transduction [Evidence IEA]; Glc8p 528468 GLC8 30035945 GLC8 Sugiyamaella lignohabitans Glc8p XP_018733557.1 527614 D 796027 CDS AWJ20_3877 30035946 531013..532137 C 1 NC_031671.1 Beta-tubulin; associates with alpha-tubulin (Tub1p and Tub3p) to form tubulin dimer, which polymerizes to form microtubules; mutation in human ortholog is associated with congenital fibrosis of the extraocular muscles (CFEOM) with polymicrogyria; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005881 - cytoplasmic microtubule [Evidence IC] [PMID 9488492]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA,IEA]; GO_component: GO:0005828 - kinetochore microtubule [Evidence IC] [PMID 9488492]; GO_component: GO:0005874 - microtubule [Evidence IEA,IEA]; GO_component: GO:0005880 - nuclear microtubule [Evidence IC] [PMID 9488492]; GO_component: GO:0043234 - protein complex [Evidence IEA]; GO_component: GO:0005816 - spindle pole body [Evidence IDA] [PMID 9585415]; GO_component: GO:0045298 - tubulin complex [Evidence IDA,IPI] [PMID 9488492]; GO_function: GO:0005525 - GTP binding [Evidence IEA,IEA]; GO_function: GO:0003924 - GTPase activity [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0005200 - structural constituent of cytoskeleton [Evidence IEA]; GO_process: GO:0006184 - GTP catabolic process [Evidence IEA]; GO_process: GO:0045143 - homologous chromosome segregation [Evidence IC] [PMID 9488492]; GO_process: GO:0007017 - microtubule-based process [Evidence IEA]; GO_process: GO:0000070 - mitotic sister chromatid segregation [Evidence IC] [PMID 9488492]; GO_process: GO:0030473 - nuclear migration along microtubule [Evidence IC] [PMID 9488492]; GO_process: GO:0051258 - protein polymerization [Evidence IEA]; GO_process: GO:0046677 - response to antibiotic [Evidence IEA]; beta-tubulin 532137 TUB2 30035946 TUB2 Sugiyamaella lignohabitans beta-tubulin XP_018733558.1 531013 D 796027 CDS AWJ20_3878 30035947 540215..541075 C 1 NC_031671.1 Putative vacuolar Fe2+/Mn2+ transporter; suppresses respiratory deficit of yfh1 mutants, which lack the ortholog of mammalian frataxin, by preventing mitochondrial iron accumulation; relative distribution to the vacuole decreases upon DNA replication stress; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0005794 - Golgi apparatus [Evidence IDA] [PMID 8866476]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA]; GO_component: GO:0000324 - fungal-type vacuole [Evidence IDA] [PMID 23708375]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 11390404]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 22842922]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0015093 - ferrous iron transmembrane transporter activity [Evidence IMP] [PMID 11390404]; GO_function: GO:0005384 - manganese ion transmembrane transporter activity [Evidence IMP] [PMID 11390404]; GO_process: GO:0006874 - cellular calcium ion homeostasis [Evidence IGI,IMP] [PMID 7941738]; GO_process: GO:0006879 - cellular iron ion homeostasis [Evidence IGI,IMP] [PMID 10713071]; GO_process: GO:0030026 - cellular manganese ion homeostasis [Evidence IGI,IMP] [PMID 8866476]; GO_process: GO:0015684 - ferrous iron transport [Evidence IMP] [PMID 11390404]; GO_process: GO:0006828 - manganese ion transport [Evidence IMP] [PMID 11390404]; GO_process: GO:0006810 - transport [Evidence IEA]; Ccc1p 541075 CCC1 30035947 CCC1 Sugiyamaella lignohabitans Ccc1p XP_018733559.1 540215 D 796027 CDS AWJ20_3879 30035948 complement(541768..546084) C 1 NC_031671.1 uncharacterized protein 546084 30035948 AWJ20_3879 Sugiyamaella lignohabitans uncharacterized protein XP_018733560.1 541768 R 796027 CDS AWJ20_3880 30035950 548349..550058 C 1 NC_031671.1 High affinity methionine permease; integral membrane protein with 13 putative membrane-spanning regions; also involved in cysteine uptake; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0005887 - integral component of plasma membrane [Evidence ISS] [PMID 8893857]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA,IEA]; GO_function: GO:0000102 - L-methionine secondary active transmembrane transporter activity [Evidence IDA] [PMID 8893857]; GO_function: GO:0015171 - amino acid transmembrane transporter activity [Evidence IEA]; GO_process: GO:0003333 - amino acid transmembrane transport [Evidence IEA]; GO_process: GO:0006865 - amino acid transport [Evidence IEA]; GO_process: GO:0042883 - cysteine transport [Evidence IDA] [PMID 11330701]; GO_process: GO:0044690 - methionine import [Evidence IGI,IMP] [PMID 8893857]; GO_process: GO:0015821 - methionine transport [Evidence IDA] [PMID 11330701]; GO_process: GO:0000101 - sulfur amino acid transport [Evidence IMP] [PMID 8893857]; GO_process: GO:0006810 - transport [Evidence IEA]; Mup1p 550058 MUP1 30035950 MUP1 Sugiyamaella lignohabitans Mup1p XP_018733561.1 548349 D 796027 CDS AWJ20_3881 30035951 complement(550308..552002) C 1 NC_031671.1 uncharacterized protein 552002 30035951 AWJ20_3881 Sugiyamaella lignohabitans uncharacterized protein XP_018733562.1 550308 R 796027 CDS AWJ20_3882 30035952 complement(552510..553592) C 1 NC_031671.1 Actin; structural protein involved in cell polarization, endocytosis, and other cytoskeletal functions; GO_component: GO:0031011 - Ino80 complex [Evidence IPI] [PMID 10952318]; GO_component: GO:0031011 - Ino80 complex [Evidence IPI] [PMID 24034245]; GO_component: GO:0035267 - NuA4 histone acetyltransferase complex [Evidence IDA] [PMID 10911987]; GO_component: GO:0035267 - NuA4 histone acetyltransferase complex [Evidence IPI] [PMID 15485911]; GO_component: GO:0000812 - Swr1 complex [Evidence IDA] [PMID 14645854]; GO_component: GO:0000812 - Swr1 complex [Evidence IDA] [PMID 14690608]; GO_component: GO:0000812 - Swr1 complex [Evidence IDA] [PMID 16299513]; GO_component: GO:0030479 - actin cortical patch [Evidence IDA] [PMID 3967297]; GO_component: GO:0030479 - actin cortical patch [Evidence IDA] [PMID 6365930]; GO_component: GO:0030479 - actin cortical patch [Evidence IDA] [PMID 8163554]; GO_component: GO:0005884 - actin filament [Evidence IDA] [PMID 6217414]; GO_component: GO:0032432 - actin filament bundle [Evidence IDA] [PMID 3967297]; GO_component: GO:0032432 - actin filament bundle [Evidence IDA] [PMID 6365930]; GO_component: GO:0032432 - actin filament bundle [Evidence IDA] [PMID 8163554]; GO_component: GO:0000142 - cellular bud neck contractile ring [Evidence IDA] [PMID 3967297]; GO_component: GO:0000142 - cellular bud neck contractile ring [Evidence IDA] [PMID 8163554]; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA,IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0004402 - histone acetyltransferase activity [Evidence IDA] [PMID 10911987]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0005200 - structural constituent of cytoskeleton [Evidence IDA] [PMID 6217414]; GO_process: GO:0006281 - DNA repair [Evidence IDA] [PMID 16135807]; GO_process: GO:0000916 - actomyosin contractile ring contraction [Evidence IDA,IMP] [PMID 9732290]; GO_process: GO:0030476 - ascospore wall assembly [Evidence IDA] [PMID 17118118]; GO_process: GO:0007119 - budding cell isotropic bud growth [Evidence TAS] [PMID 10652251]; GO_process: GO:0034599 - cellular response to oxidative stress [Evidence IGI] [PMID 17287397]; GO_process: GO:0001300 - chronological cell aging [Evidence IMP] [PMID 15024029]; GO_process: GO:0006897 - endocytosis [Evidence IMP] [PMID 8590801]; GO_process: GO:0030010 - establishment of cell polarity [Evidence IGI] [PMID 9864365]; GO_process: GO:0000132 - establishment of mitotic spindle orientation [Evidence TAS] [PMID 10652251]; GO_process: GO:0006887 - exocytosis [Evidence TAS] [PMID 10652251]; GO_process: GO:0031505 - fungal-type cell wall organization [Evidence TAS] [PMID 10652251]; GO_process: GO:0016573 - histone acetylation [Evidence IDA] [PMID 10911987]; GO_process: GO:0000001 - mitochondrion inheritance [Evidence TAS] [PMID 10652251]; GO_process: GO:0009306 - protein secretion [Evidence IGI,IMP] [PMID 10793147]; GO_process: GO:0000011 - vacuole inheritance [Evidence IGI,IMP] [PMID 8978821]; GO_process: GO:0030050 - vesicle transport along actin filament [Evidence TAS] [PMID 10652251]; actin 553592 ACT1 30035952 ACT1 Sugiyamaella lignohabitans actin XP_018733563.1 552510 R 796027 CDS AWJ20_3883 30035953 559176..559388 C 1 NC_031671.1 uncharacterized protein 559388 30035953 AWJ20_3883 Sugiyamaella lignohabitans uncharacterized protein XP_018733564.1 559176 D 796027 CDS AWJ20_3884 30035954 562802..566446 C 1 NC_031671.1 Vacuolar Ca2+ ATPase involved in depleting cytosol of Ca2+ ions; prevents growth inhibition by activation of calcineurin in the presence of elevated concentrations of calcium; similar to mammalian PMCA1a; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 24124599]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 7507493]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0005388 - calcium-transporting ATPase activity [Evidence IEA,IEA]; GO_function: GO:0005388 - calcium-transporting ATPase activity [Evidence IMP] [PMID 10431803]; GO_function: GO:0005388 - calcium-transporting ATPase activity [Evidence IGI] [PMID 7507493]; GO_function: GO:0019829 - cation-transporting ATPase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_process: GO:0070588 - calcium ion transmembrane transport [Evidence IEA]; GO_process: GO:0006816 - calcium ion transport [Evidence IEA]; GO_process: GO:0006816 - calcium ion transport [Evidence IMP] [PMID 15280017]; GO_process: GO:0006816 - calcium ion transport [Evidence IMP] [PMID 7507493]; GO_process: GO:0006812 - cation transport [Evidence IEA]; GO_process: GO:0006874 - cellular calcium ion homeostasis [Evidence IMP] [PMID 7507493]; GO_process: GO:0006811 - ion transport [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IMP] [PMID 7507493]; GO_process: GO:0006810 - transport [Evidence IEA]; calcium-transporting ATPase PMC1 566446 PMC1 30035954 PMC1 Sugiyamaella lignohabitans calcium-transporting ATPase PMC1 XP_018733565.1 562802 D 796027 CDS AWJ20_3885 30035955 complement(563746..564084) C 1 NC_031671.1 uncharacterized protein 564084 30035955 AWJ20_3885 Sugiyamaella lignohabitans uncharacterized protein XP_018733566.1 563746 R 796027 CDS AWJ20_3886 30035956 complement(564754..565350) C 1 NC_031671.1 uncharacterized protein 565350 30035956 AWJ20_3886 Sugiyamaella lignohabitans uncharacterized protein XP_018733567.1 564754 R 796027 CDS AWJ20_3887 30035957 complement(567989..569179) C 1 NC_031671.1 Aspartic protease; member of the yapsin family of proteases involved in cell wall growth and maintenance; attached to the plasma membrane via a glycosylphosphatidylinositol (GPI) anchor; YPS1 has a paralog, MKC7, that arose from the whole genome duplication; GO_component: GO:0031225 - anchored component of membrane [Evidence IEA]; GO_component: GO:0009277 - fungal-type cell wall [Evidence IDA] [PMID 10383953]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_function: GO:0004190 - aspartic-type endopeptidase activity [Evidence IEA,IEA]; GO_function: GO:0004190 - aspartic-type endopeptidase activity [Evidence IDA] [PMID 8389368]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_process: GO:0031505 - fungal-type cell wall organization [Evidence IGI] [PMID 16087741]; GO_process: GO:0016485 - protein processing [Evidence IDA] [PMID 8626758]; GO_process: GO:0006508 - proteolysis [Evidence IEA,IEA]; Yps1p 569179 YPS1 30035957 YPS1 Sugiyamaella lignohabitans Yps1p XP_018733568.1 567989 R 796027 CDS AWJ20_3889 30035959 complement(570577..571596) C 1 NC_031671.1 Putative dihydrokaempferol 4-reductase; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0004090 - carbonyl reductase (NADPH) activity [Evidence ISA] [PMID 19577617]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0050662 - coenzyme binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0044237 - cellular metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; carbonyl reductase (NADPH-dependent) 571596 30035959 AWJ20_3889 Sugiyamaella lignohabitans carbonyl reductase (NADPH-dependent) XP_018733569.1 570577 R 796027 CDS AWJ20_3890 30035961 573547..574593 C 1 NC_031671.1 E2-like enzyme; involved in autophagy and the cytoplasm-to-vacuole targeting (Cvt) pathway; plays a role in formation of Atg8p-phosphatidylethanolamine conjugates, which are involved in membrane dynamics during autophagy and Cvt; interaction with Atg8p is regulated by its acetylation by Esa1p (catalytic subunit of NuA4 histone acetyltransferase complex) while attenuation of Atg3 acetylation is mediated by histone deacetylase Rpd3p; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 11149920]; GO_function: GO:0019776 - Atg8 ligase activity [Evidence IMP,ISS] [PMID 11100732]; GO_process: GO:0006501 - C-terminal protein lipidation [Evidence IMP] [PMID 11100732]; GO_process: GO:0006501 - C-terminal protein lipidation [Evidence IDA,IMP] [PMID 15277523]; GO_process: GO:0032258 - CVT pathway [Evidence IMP] [PMID 9023185]; GO_process: GO:0000045 - autophagic vacuole assembly [Evidence IMP] [PMID 11149920]; GO_process: GO:0006914 - autophagy [Evidence IEA]; GO_process: GO:0044805 - late nucleophagy [Evidence IMP] [PMID 22768199]; GO_process: GO:0000422 - mitochondrion degradation [Evidence IMP] [PMID 19793921]; GO_process: GO:0034727 - piecemeal microautophagy of nucleus [Evidence IMP] [PMID 18701704]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Atg3p 574593 ATG3 30035961 ATG3 Sugiyamaella lignohabitans Atg3p XP_018733570.1 573547 D 796027 CDS AWJ20_3891 30035962 576039..579665 C 1 NC_031671.1 Protein involved in sister chromatid condensation and cohesion; colocalizes with cohesin on chromosomes, may function as a protein-protein interaction scaffold; also required during meiosis; relocalizes to the cytosol in response to hypoxia; GO_component: GO:0000794 - condensed nuclear chromosome [Evidence IDA] [PMID 11062262]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 22932476]; GO_component: GO:0000798 - nuclear cohesin complex [Evidence IDA] [PMID 22901742]; GO_component: GO:0034990 - nuclear mitotic cohesin complex [Evidence IDA] [PMID 22912589]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22932476]; GO_function: GO:0005198 - structural molecule activity [Evidence ISS] [PMID 11137006]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0006302 - double-strand break repair [Evidence IMP] [PMID 11448778]; GO_process: GO:0006302 - double-strand break repair [Evidence IMP] [PMID 19736318]; GO_process: GO:0007126 - meiotic nuclear division [Evidence IMP] [PMID 15819623]; GO_process: GO:0007076 - mitotic chromosome condensation [Evidence IMP] [PMID 11062262]; GO_process: GO:0007067 - mitotic nuclear division [Evidence IEA]; GO_process: GO:0007064 - mitotic sister chromatid cohesion [Evidence IMP] [PMID 11062262]; GO_process: GO:0007064 - mitotic sister chromatid cohesion [Evidence IMP] [PMID 14623866]; GO_process: GO:0007129 - synapsis [Evidence IMP] [PMID 19736318]; Pds5p 579665 PDS5 30035962 PDS5 Sugiyamaella lignohabitans Pds5p XP_018733571.1 576039 D 796027 CDS AWJ20_3892 30035963 complement(579889..580893) C 1 NC_031671.1 Essential component of the Rpd3S histone deacetylase complex; interacts with Eaf3p; GO_component: GO:0032221 - Rpd3S complex [Evidence IDA] [PMID 16286007]; GO_component: GO:0032221 - Rpd3S complex [Evidence IDA] [PMID 16286008]; GO_component: GO:0000118 - histone deacetylase complex [Evidence IDA] [PMID 16286008]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0016568 - chromatin modification [Evidence IEA]; GO_process: GO:0016575 - histone deacetylation [Evidence IMP] [PMID 16286007]; GO_process: GO:0060195 - negative regulation of antisense RNA transcription [Evidence IMP] [PMID 21248844]; GO_process: GO:0030174 - regulation of DNA-dependent DNA replication initiation [Evidence IMP] [PMID 19417103]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006368 - transcription elongation from RNA polymerase II promoter [Evidence IGI] [PMID 19948887]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; GO_process: GO:0061587 - transfer RNA gene-mediated silencing [Evidence IMP] [PMID 23707796]; Rco1p 580893 RCO1 30035963 RCO1 Sugiyamaella lignohabitans Rco1p XP_018733572.1 579889 R 796027 CDS AWJ20_3893 30035964 complement(join(583659..584782,585259..585271)) C 1 NC_031671.1 Methionine aminopeptidase; catalyzes the cotranslational removal of N-terminal methionine from nascent polypeptides; function is partially redundant with that of Map1p; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0004177 - aminopeptidase activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA,IEA]; GO_function: GO:0070006 - metalloaminopeptidase activity [Evidence IEA]; GO_function: GO:0070006 - metalloaminopeptidase activity [Evidence IGI,ISA] [PMID 8618900]; GO_function: GO:0008235 - metalloexopeptidase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_process: GO:0070084 - protein initiator methionine removal [Evidence IEA]; GO_process: GO:0035551 - protein initiator methionine removal involved in protein maturation [Evidence IMP] [PMID 11811952]; GO_process: GO:0006508 - proteolysis [Evidence IEA,IEA]; Map2p 585271 MAP2 30035964 MAP2 Sugiyamaella lignohabitans Map2p XP_018733573.1 583659 R 796027 CDS AWJ20_3894 30035965 597377..598729 C 1 NC_031671.1 Mitochondrial ornithine acetyltransferase; catalyzes the fifth step in arginine biosynthesis; also possesses acetylglutamate synthase activity, regenerates acetylglutamate while forming ornithine; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA,IEA]; GO_component: GO:0005759 - mitochondrial matrix [Evidence IDA] [PMID 205532]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0004042 - acetyl-CoA:L-glutamate N-acetyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0004042 - acetyl-CoA:L-glutamate N-acetyltransferase activity [Evidence IDA,IGI] [PMID 9428669]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0004358 - glutamate N-acetyltransferase activity [Evidence IEA,IEA,IEA]; GO_function: GO:0004358 - glutamate N-acetyltransferase activity [Evidence IDA] [PMID 9428669]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016746 - transferase activity, transferring acyl groups [Evidence IEA]; GO_process: GO:0006526 - arginine biosynthetic process [Evidence IEA,IEA,IEA,IEA]; GO_process: GO:0006526 - arginine biosynthetic process [Evidence TAS] [PMID 12603335]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0006592 - ornithine biosynthetic process [Evidence IDA] [PMID 9428669]; glutamate N-acetyltransferase 598729 ARG7 30035965 ARG7 Sugiyamaella lignohabitans glutamate N-acetyltransferase XP_018733574.1 597377 D 796027 CDS AWJ20_3895 30035966 complement(597652..598059) C 1 NC_031671.1 Ecm40p 598059 30035966 AWJ20_3895 Sugiyamaella lignohabitans Ecm40p XP_018733575.1 597652 R 796027 CDS AWJ20_3896 30035967 complement(602256..604001) C 1 NC_031671.1 uncharacterized protein 604001 30035967 AWJ20_3896 Sugiyamaella lignohabitans uncharacterized protein XP_018733576.1 602256 R 796027 CDS AWJ20_3897 30035968 complement(605282..605665) C 1 NC_031671.1 RNA binding protein; part of U3 snoRNP involved in rRNA processing, part of U4/U6-U5 tri-snRNP involved in mRNA splicing, similar to human 15.5K protein; GO_component: GO:0046540 - U4/U6 x U5 tri-snRNP complex [Evidence IDA] [PMID 10377396]; GO_component: GO:0046540 - U4/U6 x U5 tri-snRNP complex [Evidence IDA] [PMID 10449419]; GO_component: GO:0031428 - box C/D snoRNP complex [Evidence IDA] [PMID 11081632]; GO_component: GO:0005730 - nucleolus [Evidence IEA,IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 10684247]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA,IEA]; GO_component: GO:0032040 - small-subunit processome [Evidence IDA] [PMID 12068309]; GO_component: GO:0005681 - spliceosomal complex [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA,IEA]; GO_function: GO:0003723 - RNA binding [Evidence IMP,ISS] [PMID 14730029]; GO_function: GO:0003723 - RNA binding [Evidence IDA] [PMID 17332014]; GO_function: GO:0003723 - RNA binding [Evidence IPI] [PMID 17631273]; GO_process: GO:0008380 - RNA splicing [Evidence IEA]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0000398 - mRNA splicing, via spliceosome [Evidence IPI] [PMID 10377396]; GO_process: GO:0000398 - mRNA splicing, via spliceosome [Evidence IMP] [PMID 11720284]; GO_process: GO:0000398 - mRNA splicing, via spliceosome [Evidence IMP] [PMID 14730029]; GO_process: GO:0000462 - maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 14730029]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA,IEA]; RNA binding protein SNU13 605665 SNU13 30035968 SNU13 Sugiyamaella lignohabitans RNA binding protein SNU13 XP_018733577.1 605282 R 796027 CDS AWJ20_3898 30035969 606664..608376 C 1 NC_031671.1 uncharacterized protein 608376 30035969 AWJ20_3898 Sugiyamaella lignohabitans uncharacterized protein XP_018733578.1 606664 D 796027 CDS AWJ20_3899 30035970 613092..614648 C 1 NC_031671.1 Vacuolar aminopeptidase yscI; zinc metalloproteinase that belongs to the peptidase family M18; often used as a marker protein in studies of autophagy and cytosol to vacuole targeting (CVT) pathway; protein increases in abundance and relative distribution to cytoplasmic foci increases upon DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0000324 - fungal-type vacuole [Evidence IDA] [PMID 1400574]; GO_component: GO:0005773 - vacuole [Evidence IEA,IEA]; GO_function: GO:0004177 - aminopeptidase activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0070006 - metalloaminopeptidase activity [Evidence IDA] [PMID 3882418]; GO_function: GO:0008237 - metallopeptidase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0006508 - proteolysis [Evidence IEA,IEA]; GO_process: GO:0007039 - vacuolar protein catabolic process [Evidence ISS] [PMID 2651436]; GO_process: GO:0007039 - vacuolar protein catabolic process [Evidence ISS] [PMID 2689224]; Ape1p 614648 APE1 30035970 APE1 Sugiyamaella lignohabitans Ape1p XP_018733579.1 613092 D 796027 CDS AWJ20_3900 30035973 complement(614915..616768) C 1 NC_031671.1 Putative paralog of ATR1; but not required for boron tolerance; member of the DHA2 family of drug:H+ antiporters; YOR378W is not an essential gene; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Amf1p 616768 AMF1 30035973 AMF1 Sugiyamaella lignohabitans Amf1p XP_018733580.1 614915 R 796027 CDS AWJ20_3901 30035974 619297..620592 C 1 NC_031671.1 Allantoate permease; ureidosuccinate permease; also transports dipeptides, though with lower affinity than for allantoate and ureidosuccinate; expression is constitutive but sensitive to nitrogen catabolite repression; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IMP,ISS] [PMID 3275614]; GO_function: GO:0015124 - allantoate transmembrane transporter activity [Evidence IMP,ISS] [PMID 3275614]; GO_function: GO:0042936 - dipeptide transporter activity [Evidence IMP] [PMID 16429164]; GO_function: GO:0042936 - dipeptide transporter activity [Evidence IGI,IMP] [PMID 17693598]; GO_function: GO:0005215 - transporter activity [Evidence IEA]; GO_process: GO:0015719 - allantoate transport [Evidence IMP] [PMID 3275614]; GO_process: GO:0042938 - dipeptide transport [Evidence IMP] [PMID 16429164]; GO_process: GO:0042938 - dipeptide transport [Evidence IGI,IMP] [PMID 17693598]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; GO_process: GO:0042939 - tripeptide transport [Evidence IMP] [PMID 16429164]; allantoate permease 620592 DAL5 30035974 DAL5 Sugiyamaella lignohabitans allantoate permease XP_018733581.1 619297 D 796027 CDS AWJ20_3902 30035975 623341..626019 C 1 NC_031671.1 Deadenylation-dependent mRNA-decapping factor; also required for faithful chromosome transmission, maintenance of rDNA locus stability, and protection of mRNA 3'-UTRs from trimming; associated with topoisomerase II; binds to mRNAs under glucose starvation, most often in the 3' UTR; functionally linked to Pab1p; forms cytoplasmic foci upon DNA replication stress; phosphorylation by PKA inhibits P body foci formation; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 23706738]; GO_component: GO:0000932 - cytoplasmic mRNA processing body [Evidence IEA]; GO_component: GO:0000932 - cytoplasmic mRNA processing body [Evidence IDA,IMP] [PMID 12730603]; GO_component: GO:0010494 - cytoplasmic stress granule [Evidence IDA] [PMID 23222640]; GO_component: GO:0022627 - cytosolic small ribosomal subunit [Evidence IDA] [PMID 10779343]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 23706738]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003682 - chromatin binding [Evidence IDA] [PMID 23706738]; GO_function: GO:0003729 - mRNA binding [Evidence IDA,IDA] [PMID 23222640]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0033962 - cytoplasmic mRNA processing body assembly [Evidence IGI,IMP] [PMID 18981231]; GO_process: GO:0000290 - deadenylation-dependent decapping of nuclear-transcribed mRNA [Evidence IMP,IPI] [PMID 10913177]; GO_process: GO:0001731 - formation of translation preinitiation complex [Evidence IMP] [PMID 20832728]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0045947 - negative regulation of translational initiation [Evidence IDA,IMP] [PMID 20832728]; GO_process: GO:0006417 - regulation of translation [Evidence IEA]; GO_process: GO:0006446 - regulation of translational initiation [Evidence IGI,IMP] [PMID 10779343]; Pat1p 626019 PAT1 30035975 PAT1 Sugiyamaella lignohabitans Pat1p XP_018733582.1 623341 D 796027 CDS AWJ20_3903 30035976 626975..627202 C 1 NC_031671.1 Mitochondrial matrix acyl carrier protein; involved in biosynthesis of octanoate, which is a precursor to lipoic acid; activated by phosphopantetheinylation catalyzed by Ppt2p; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0070469 - respiratory chain [Evidence IEA]; GO_function: GO:0000036 - ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process [Evidence ISS] [PMID 8394042]; GO_process: GO:0006633 - fatty acid biosynthetic process [Evidence IEA,IEA,IEA]; GO_process: GO:0006631 - fatty acid metabolic process [Evidence IEA]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0009107 - lipoate biosynthetic process [Evidence IMP] [PMID 9187370]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; Acp1p 627202 ACP1 30035976 ACP1 Sugiyamaella lignohabitans Acp1p XP_018733583.1 626975 D 796027 CDS AWJ20_3904 30035977 629147..630802 C 1 NC_031671.1 Oxalyl-CoA synthetase; capable of catalyzing conversion of oxalate to oxalyl-CoA; catalyzes first step in pathway of oxalate degradation that functions to protect yeast from inhibitory effects of oxalate; peroxisomal protein that binds mRNA; localizes to both peroxisomal peripheral membrane and matrix, expression is highly inducible by oleic acid; similar to E. coli long chain acyl-CoA synthetase; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005782 - peroxisomal matrix [Evidence IEA]; GO_component: GO:0005782 - peroxisomal matrix [Evidence IDA] [PMID 8841414]; GO_component: GO:0005778 - peroxisomal membrane [Evidence IEA]; GO_component: GO:0005778 - peroxisomal membrane [Evidence IDA] [PMID 8841414]; GO_component: GO:0005777 - peroxisome [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 20844764]; GO_function: GO:0050203 - oxalate-CoA ligase activity [Evidence IDA,IMP] [PMID 24291261]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0033611 - oxalate catabolic process [Evidence IDA,IMP] [PMID 24291261]; Pcs60p 630802 PCS60 30035977 PCS60 Sugiyamaella lignohabitans Pcs60p XP_018733584.1 629147 D 796027 CDS AWJ20_3905 30035978 complement(631041..632960) C 1 NC_031671.1 Essential protein involved in ribosome biogenesis; putative ATP-dependent RNA helicase of the DEAD-box protein family; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 9528757]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 15126390]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 17145778]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004004 - ATP-dependent RNA helicase activity [Evidence ISS] [PMID 10322435]; GO_function: GO:0008026 - ATP-dependent helicase activity [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0004386 - helicase activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0000466 - maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 9528757]; GO_process: GO:0000463 - maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 9528757]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; Dbp6p 632960 DBP6 30035978 DBP6 Sugiyamaella lignohabitans Dbp6p XP_018733585.1 631041 R 796027 CDS AWJ20_3906 30035979 635645..637453 C 1 NC_031671.1 Phosphatidylinositol-4-phosphate 5-kinase; involved in actin cytoskeleton organization and cell morphogenesis; multicopy suppressor of stt4 mutation; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9624177]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 9624177]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IEA]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IDA] [PMID 9624177]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IDA] [PMID 9624178]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016307 - phosphatidylinositol phosphate kinase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0031321 - ascospore-type prospore assembly [Evidence IGI] [PMID 19502581]; GO_process: GO:0046488 - phosphatidylinositol metabolic process [Evidence IEA]; GO_process: GO:0046854 - phosphatidylinositol phosphorylation [Evidence IDA] [PMID 9624177]; GO_process: GO:0046854 - phosphatidylinositol phosphorylation [Evidence IDA] [PMID 9624178]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; 1-phosphatidylinositol-4-phosphate 5-kinase 637453 MSS4 30035979 MSS4 Sugiyamaella lignohabitans 1-phosphatidylinositol-4-phosphate 5-kinase XP_018733586.1 635645 D 796027 CDS AWJ20_3907 30035980 complement(655603..658500) C 1 NC_031671.1 polyprotein of non-LTR retrotransposon Zorro 1 and repeat region-related DNA; polyprotein of L1-like non-LTR retrotransposon Zorro 1 658500 POL90 30035980 POL90 Sugiyamaella lignohabitans polyprotein of L1-like non-LTR retrotransposon Zorro 1 XP_018733587.1 655603 R 796027 CDS AWJ20_3909 30035982 664264..665214 C 1 NC_031671.1 uncharacterized protein 665214 30035982 AWJ20_3909 Sugiyamaella lignohabitans uncharacterized protein XP_018733588.1 664264 D 796027 CDS AWJ20_3910 30035984 665497..668793 C 1 NC_031671.1 Subunit of the Nup84p subcomplex of the nuclear pore complex (NPC); contributes to nucleocytoplasmic transport and NPC biogenesis and is involved in establishment of a normal nucleocytoplasmic concentration gradient of the GTPase Gsp1p; also plays roles in several processes that may require localization of genes or chromosomes at the nuclear periphery, including double-strand break repair, transcription and chromatin silencing; homologous to human NUP85 aka NUP75; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0031965 - nuclear membrane [Evidence IEA]; GO_component: GO:0005643 - nuclear pore [Evidence IEA,IEA]; GO_component: GO:0005643 - nuclear pore [Evidence IDA] [PMID 10684247]; GO_component: GO:0031080 - nuclear pore outer ring [Evidence IDA] [PMID 11823431]; GO_component: GO:0031080 - nuclear pore outer ring [Evidence IDA] [PMID 18046406]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_function: GO:0017056 - structural constituent of nuclear pore [Evidence IMP] [PMID 22331846]; GO_process: GO:0006406 - mRNA export from nucleus [Evidence IMP] [PMID 8565072]; GO_process: GO:0006406 - mRNA export from nucleus [Evidence IMP] [PMID 8816998]; GO_process: GO:0051028 - mRNA transport [Evidence IEA]; GO_process: GO:0031081 - nuclear pore distribution [Evidence IMP] [PMID 8565072]; GO_process: GO:0031081 - nuclear pore distribution [Evidence IMP] [PMID 8816998]; GO_process: GO:0045893 - positive regulation of transcription, DNA-templated [Evidence IDA] [PMID 15817685]; GO_process: GO:0006606 - protein import into nucleus [Evidence IMP] [PMID 12730220]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0000055 - ribosomal large subunit export from nucleus [Evidence IMP] [PMID 11071906]; GO_process: GO:0006810 - transport [Evidence IEA]; Nup85p 668793 NUP85 30035984 NUP85 Sugiyamaella lignohabitans Nup85p XP_018733589.1 665497 D 796027 CDS AWJ20_3911 30035985 670651..672309 C 1 NC_031671.1 uncharacterized protein 672309 30035985 AWJ20_3911 Sugiyamaella lignohabitans uncharacterized protein XP_018733590.1 670651 D 796027 CDS AWJ20_3912 30035986 complement(672479..673576) C 1 NC_031671.1 uncharacterized protein 673576 30035986 AWJ20_3912 Sugiyamaella lignohabitans uncharacterized protein XP_018733591.1 672479 R 796027 CDS AWJ20_3913 30035987 673943..675442 C 1 NC_031671.1 Catalytic subunit of the histone acetyltransferase complex (NuA4); acetylates four conserved internal lysines of histone H4 N-terminal tail and can acetylate histone H2A; required for cell cycle progression and transcriptional silencing at the rDNA locus and regulation of autophagy; GO_component: GO:0035267 - NuA4 histone acetyltransferase complex [Evidence IPI] [PMID 10487762]; GO_component: GO:0035267 - NuA4 histone acetyltransferase complex [Evidence IDA] [PMID 10911987]; GO_component: GO:0035267 - NuA4 histone acetyltransferase complex [Evidence IPI] [PMID 15485911]; GO_component: GO:0032777 - Piccolo NuA4 histone acetyltransferase complex [Evidence IDA] [PMID 12782659]; GO_component: GO:0000790 - nuclear chromatin [Evidence IDA] [PMID 10911987]; GO_component: GO:0005724 - nuclear telomeric heterochromatin [Evidence IDA] [PMID 10911987]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_function: GO:0010485 - H4 histone acetyltransferase activity [Evidence IDA] [PMID 12110674]; GO_function: GO:0004402 - histone acetyltransferase activity [Evidence IEA]; GO_function: GO:0004402 - histone acetyltransferase activity [Evidence IMP] [PMID 10487762]; GO_function: GO:0004402 - histone acetyltransferase activity [Evidence IDA] [PMID 17274630]; GO_function: GO:0034212 - peptide N-acetyltransferase activity [Evidence IMP] [PMID 23050233]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups [Evidence IEA]; GO_process: GO:0006281 - DNA repair [Evidence IMP] [PMID 12353039]; GO_process: GO:0006281 - DNA repair [Evidence IDA] [PMID 16135807]; GO_process: GO:0006354 - DNA-templated transcription, elongation [Evidence IDA,IMP] [PMID 15949446]; GO_process: GO:0016568 - chromatin modification [Evidence IEA]; GO_process: GO:0000183 - chromatin silencing at rDNA [Evidence IGI,IMP] [PMID 16436512]; GO_process: GO:0016573 - histone acetylation [Evidence IDA] [PMID 10082517]; GO_process: GO:0016573 - histone acetylation [Evidence IDA] [PMID 10487762]; GO_process: GO:0018394 - peptidyl-lysine acetylation [Evidence IMP] [PMID 23050233]; GO_process: GO:0016239 - positive regulation of macroautophagy [Evidence IMP] [PMID 22539722]; GO_process: GO:0032968 - positive regulation of transcription elongation from RNA polymerase II promoter [Evidence IGI,IMP] [PMID 19822662]; GO_process: GO:0051726 - regulation of cell cycle [Evidence IMP] [PMID 10082517]; GO_process: GO:0034401 - regulation of transcription by chromatin organization [Evidence IMP] [PMID 11867538]; GO_process: GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 11036083]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA,IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; NuA4 histone acetyltransferase complex catalytic subunit ESA1 675442 ESA1 30035987 ESA1 Sugiyamaella lignohabitans NuA4 histone acetyltransferase complex catalytic subunit ESA1 XP_018733592.1 673943 D 796027 CDS AWJ20_3914 30035988 complement(675743..676891) C 1 NC_031671.1 Peptidyl-prolyl cis/trans-isomerase; also activates the phosphotyrosyl phosphatase activity of protein phosphatase 2A (PP2A); regulates G1 phase progression, the osmoresponse, microtubule dynamics; subunit of the Tap42p-Pph21p-Rrd2p complex; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0000159 - protein phosphatase type 2A complex [Evidence IDA] [PMID 17550305]; GO_function: GO:0016853 - isomerase activity [Evidence IEA]; GO_function: GO:0003755 - peptidyl-prolyl cis-trans isomerase activity [Evidence IEA,IEA]; GO_function: GO:0003755 - peptidyl-prolyl cis-trans isomerase activity [Evidence IDA] [PMID 16380387]; GO_function: GO:0019211 - phosphatase activator activity [Evidence IEA]; GO_function: GO:0008601 - protein phosphatase type 2A regulator activity [Evidence IGI,ISS] [PMID 10660069]; GO_function: GO:0008601 - protein phosphatase type 2A regulator activity [Evidence IMP] [PMID 12952889]; GO_process: GO:0030472 - mitotic spindle organization in nucleus [Evidence IMP] [PMID 11262194]; GO_process: GO:0043085 - positive regulation of catalytic activity [Evidence IEA]; GO_process: GO:0006457 - protein folding [Evidence IEA]; GO_process: GO:0000413 - protein peptidyl-prolyl isomerization [Evidence IEA,IEA]; GO_process: GO:0006970 - response to osmotic stress [Evidence IGI,IMP] [PMID 10660069]; peptidylprolyl isomerase RRD2 676891 RRD2 30035988 RRD2 Sugiyamaella lignohabitans peptidylprolyl isomerase RRD2 XP_018733593.1 675743 R 796027 CDS AWJ20_3915 30035989 677182..677685 C 1 NC_031671.1 Catalytic component of UDP-GlcNAc transferase; required for the second step of dolichyl-linked oligosaccharide synthesis; anchored to the ER membrane via interaction with Alg14p; similar to bacterial and human glycosyltransferases; protein abundance increases in response to DNA replication stress; GO_component: GO:0043541 - UDP-N-acetylglucosamine transferase complex [Evidence IPI] [PMID 16100110]; GO_component: GO:0043541 - UDP-N-acetylglucosamine transferase complex [Evidence IPI] [PMID 16100113]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14690591]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 16100110]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 16100113]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA,IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 14562095]; GO_component: GO:0042406 - extrinsic component of endoplasmic reticulum membrane [Evidence IDA] [PMID 16100110]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14690591]; GO_function: GO:0004577 - N-acetylglucosaminyldiphosphodolichol N-acetylglucosaminyltransferase activity [Evidence IEA]; GO_function: GO:0004577 - N-acetylglucosaminyldiphosphodolichol N-acetylglucosaminyltransferase activity [Evidence IMP,ISS] [PMID 15615718]; GO_function: GO:0004577 - N-acetylglucosaminyldiphosphodolichol N-acetylglucosaminyltransferase activity [Evidence IDA,IMP,ISS] [PMID 16100113]; GO_function: GO:0030246 - carbohydrate binding [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA]; GO_function: GO:0016758 - transferase activity, transferring hexosyl groups [Evidence IEA]; GO_process: GO:0005975 - carbohydrate metabolic process [Evidence IEA]; GO_process: GO:0006488 - dolichol-linked oligosaccharide biosynthetic process [Evidence IMP,ISS] [PMID 15615718]; GO_process: GO:0006488 - dolichol-linked oligosaccharide biosynthetic process [Evidence IDA,IMP,ISS] [PMID 16100113]; GO_process: GO:0030259 - lipid glycosylation [Evidence IEA]; N-acetylglucosaminyldiphosphodolichol N-acetylglucosaminyltransferase catalytic subunit ALG13 677685 ALG13 30035989 ALG13 Sugiyamaella lignohabitans N-acetylglucosaminyldiphosphodolichol N-acetylglucosaminyltransferase catalytic subunit ALG13 XP_018733594.1 677182 D 796027 CDS AWJ20_3916 30035990 complement(677907..678563) C 1 NC_031671.1 Protein required for maturation of mitochondrial [4Fe-4S] proteins; functions in a complex with Isa1p and possibly Iba57p; localizes to the mitochondrial intermembrane space, overexpression of ISA2 suppresses grx5 mutations; GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IDA] [PMID 10805735]; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0005506 - iron ion binding [Evidence IDA] [PMID 21987576]; GO_process: GO:0009102 - biotin biosynthetic process [Evidence IGI,IMP] [PMID 17259550]; GO_process: GO:0016226 - iron-sulfur cluster assembly [Evidence IGI,IMP] [PMID 10805735]; Isa2p 678563 ISA2 30035990 ISA2 Sugiyamaella lignohabitans Isa2p XP_018733595.1 677907 R 796027 CDS AWJ20_3917 30035991 679192..680208 C 1 NC_031671.1 uncharacterized protein 680208 30035991 AWJ20_3917 Sugiyamaella lignohabitans uncharacterized protein XP_018733596.1 679192 D 796027 CDS AWJ20_3918 30035992 complement(682735..684348) C 1 NC_031671.1 alkaline phosphatase PHO8 684348 PHO8 30035992 PHO8 Sugiyamaella lignohabitans alkaline phosphatase PHO8 XP_018733597.1 682735 R 796027 CDS AWJ20_3919 30035993 complement(685842..687503) C 1 NC_031671.1 Aromatic aminotransferase I; expression is regulated by general control of amino acid biosynthesis; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0047536 - 2-aminoadipate transaminase activity [Evidence IEA]; GO_function: GO:0047536 - 2-aminoadipate transaminase activity [Evidence IDA] [PMID 19342587]; GO_function: GO:0080130 - L-phenylalanine:2-oxoglutarate aminotransferase activity [Evidence IEA]; GO_function: GO:0008793 - aromatic-amino-acid:2-oxoglutarate aminotransferase activity [Evidence IEA]; GO_function: GO:0008793 - aromatic-amino-acid:2-oxoglutarate aminotransferase activity [Evidence IDA] [PMID 9491082]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0030170 - pyridoxal phosphate binding [Evidence IEA]; GO_function: GO:0008483 - transaminase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0019509 - L-methionine salvage from methylthioadenosine [Evidence IEA]; GO_process: GO:0009094 - L-phenylalanine biosynthetic process [Evidence IEA]; GO_process: GO:0009072 - aromatic amino acid family metabolic process [Evidence IGI,IMP] [PMID 9491083]; GO_process: GO:0009058 - biosynthetic process [Evidence IEA]; GO_process: GO:0019878 - lysine biosynthetic process via aminoadipic acid [Evidence IEA]; GO_process: GO:0006571 - tyrosine biosynthetic process [Evidence IEA]; bifunctional 2-aminoadipate transaminase/aromatic-amino-acid:2-oxoglutarate transaminase 687503 ARO8 30035993 ARO8 Sugiyamaella lignohabitans bifunctional 2-aminoadipate transaminase/aromatic-amino-acid:2-oxoglutarate transaminase XP_018733598.1 685842 R 796027 CDS AWJ20_3920 30035995 complement(687566..687775) C 1 NC_031671.1 uncharacterized protein 687775 30035995 AWJ20_3920 Sugiyamaella lignohabitans uncharacterized protein XP_018733599.1 687566 R 796027 CDS AWJ20_3921 30035996 complement(688549..689145) C 1 NC_031671.1 ARF-like small GTPase of the RAS superfamily; required for recruitment of Arl1p, a GTPase that regulates membrane traffic, to the Golgi apparatus; NatC-catalyzed N-terminal acetylation regulates Golgi membrane association mediated by interaction with membrane receptor, Sys1p; similar to ADP-ribosylation factor and orthologous to mammalian ARFRP1; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA,IEA]; GO_component: GO:0005794 - Golgi apparatus [Evidence IDA] [PMID 15077113]; GO_component: GO:0005794 - Golgi apparatus [Evidence IDA] [PMID 15077114]; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0042175 - nuclear outer membrane-endoplasmic reticulum membrane network [Evidence IDA] [PMID 9920936]; GO_function: GO:0005525 - GTP binding [Evidence IEA,IEA]; GO_function: GO:0003924 - GTPase activity [Evidence IDA,ISS] [PMID 9920936]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0043001 - Golgi to plasma membrane protein transport [Evidence IMP] [PMID 16926193]; GO_process: GO:0006886 - intracellular protein transport [Evidence IMP] [PMID 9920936]; GO_process: GO:0033365 - protein localization to organelle [Evidence IMP] [PMID 12620189]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0007264 - small GTPase mediated signal transduction [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Arf family GTPase ARL3 689145 ARL3 30035996 ARL3 Sugiyamaella lignohabitans Arf family GTPase ARL3 XP_018733600.1 688549 R 796027 CDS AWJ20_3922 30035997 690026..690946 C 1 NC_031671.1 N-succinyl-5-aminoimidazole-4-carboxamide ribotide synthetase; required for 'de novo' purine nucleotide biosynthesis; red pigment accumulates in mutant cells deprived of adenine; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0004639 - phosphoribosylaminoimidazolesuccinocarboxamide synthase activity [Evidence IEA,IEA]; GO_function: GO:0004639 - phosphoribosylaminoimidazolesuccinocarboxamide synthase activity [Evidence IDA] [PMID 1756975]; GO_function: GO:0004639 - phosphoribosylaminoimidazolesuccinocarboxamide synthase activity [Evidence IMP] [PMID 5767024]; GO_function: GO:0004639 - phosphoribosylaminoimidazolesuccinocarboxamide synthase activity [Evidence IMP] [PMID 5767025]; GO_process: GO:0006189 - 'de novo' IMP biosynthetic process [Evidence IEA]; GO_process: GO:0006189 - 'de novo' IMP biosynthetic process [Evidence IDA] [PMID 1756975]; GO_process: GO:0006189 - 'de novo' IMP biosynthetic process [Evidence IMP] [PMID 5767024]; GO_process: GO:0006189 - 'de novo' IMP biosynthetic process [Evidence IMP] [PMID 5767025]; GO_process: GO:0006164 - purine nucleotide biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0006164 - purine nucleotide biosynthetic process [Evidence IDA] [PMID 1756975]; GO_process: GO:0006164 - purine nucleotide biosynthetic process [Evidence IMP] [PMID 5767024]; GO_process: GO:0006164 - purine nucleotide biosynthetic process [Evidence IMP] [PMID 5767025]; phosphoribosylaminoimidazolesuccinocarboxamide synthase 690946 ADE1 30035997 ADE1 Sugiyamaella lignohabitans phosphoribosylaminoimidazolesuccinocarboxamide synthase XP_018733601.1 690026 D 796027 CDS AWJ20_3923 30035998 691740..693089 C 1 NC_031671.1 Mitochondrial type 2C protein phosphatase (PP2C); has similarity to mammalian PP1Ks; involved in mitophagy; null mutant is sensitive to rapamycin and has decreased phosphorylation of the Pda1 subunit of pyruvate dehydrogenase; GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IEA]; GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IDA] [PMID 17166847]; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA]; GO_component: GO:0005759 - mitochondrial matrix [Evidence IDA] [PMID 18180296]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_function: GO:0004741 - [pyruvate dehydrogenase (lipoamide)] phosphatase activity [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0004721 - phosphoprotein phosphatase activity [Evidence IEA]; GO_function: GO:0004722 - protein serine/threonine phosphatase activity [Evidence IDA] [PMID 17002782]; GO_process: GO:0016236 - macroautophagy [Evidence IGI] [PMID 17166847]; GO_process: GO:0000422 - mitochondrion degradation [Evidence IMP] [PMID 17166847]; GO_process: GO:0043085 - positive regulation of catalytic activity [Evidence IMP] [PMID 18180296]; GO_process: GO:0006470 - protein dephosphorylation [Evidence IMP] [PMID 18180296]; type 2C protein phosphatase PTC6 693089 PTC6 30035998 PTC6 Sugiyamaella lignohabitans type 2C protein phosphatase PTC6 XP_018733602.1 691740 D 796027 CDS AWJ20_3924 30035999 complement(702558..705455) C 1 NC_031671.1 polyprotein of non-LTR retrotransposon Zorro 1 and repeat region-related DNA; polyprotein of L1-like non-LTR retrotransposon Zorro 1 705455 POL90 30035999 POL90 Sugiyamaella lignohabitans polyprotein of L1-like non-LTR retrotransposon Zorro 1 XP_018733603.1 702558 R 796027 CDS AWJ20_3925 30036000 complement(717614..718165) C 1 NC_031671.1 uncharacterized protein 718165 30036000 AWJ20_3925 Sugiyamaella lignohabitans uncharacterized protein XP_018733604.1 717614 R 796027 CDS AWJ20_3927 30036002 complement(719248..719544) C 1 NC_031671.1 uncharacterized protein 719544 30036002 AWJ20_3927 Sugiyamaella lignohabitans uncharacterized protein XP_018733605.1 719248 R 796027 CDS AWJ20_3928 30036003 720516..724226 C 1 NC_031671.1 xanthine dehydrogenase/oxidase 724226 AOH2 30036003 AOH2 Sugiyamaella lignohabitans xanthine dehydrogenase/oxidase XP_018733606.1 720516 D 796027 CDS AWJ20_3929 30036004 complement(725372..726289) C 1 NC_031671.1 Sterol deacetylase; component of the sterol acetylation/deacetylation cycle along with Atf2p; active both in the endoplasmic reticulum (ER) and in lipid droplets; integral membrane protein with active site in the ER lumen; green fluorescent protein (GFP)-fusion protein localizes to the ER; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 14562095]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 24868093]; GO_component: GO:0005788 - endoplasmic reticulum lumen [Evidence IDA] [PMID 18034159]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IDA] [PMID 18034159]; GO_component: GO:0005811 - lipid particle [Evidence IDA] [PMID 24868093]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0034084 - steryl deacetylase activity [Evidence IDA,IMP] [PMID 18034159]; GO_process: GO:0009636 - response to toxic substance [Evidence IMP] [PMID 18034159]; GO_process: GO:0034210 - sterol deacetylation [Evidence IMP] [PMID 18034159]; GO_process: GO:0016125 - sterol metabolic process [Evidence IMP] [PMID 18034159]; Say1p 726289 SAY1 30036004 SAY1 Sugiyamaella lignohabitans Say1p XP_018733607.1 725372 R 796027 CDS AWJ20_3930 30036006 728241..729293 C 1 NC_031671.1 uncharacterized protein 729293 30036006 AWJ20_3930 Sugiyamaella lignohabitans uncharacterized protein XP_018733608.1 728241 D 796027 CDS AWJ20_3931 30036007 729621..731246 C 1 NC_031671.1 Putative flavin-dependent monooxygenase; involved in ubiquinone (Coenzyme Q) biosynthesis; localizes to the matrix face of the mitochondrial inner membrane in a large complex with other ubiquinone biosynthetic enzymes; human COX6 can rescue a yeast cox6 mutant and is implicated in steroid-resistant nephrotic syndrome (SRNS); GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IDA] [PMID 12721307]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0004499 - N,N-dimethylaniline monooxygenase activity [Evidence ISA] [PMID 12721307]; GO_function: GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO_function: GO:0004497 - monooxygenase activity [Evidence IEA,IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0016709 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0006744 - ubiquinone biosynthetic process [Evidence IEA,IEA,IEA]; GO_process: GO:0006744 - ubiquinone biosynthetic process [Evidence IMP] [PMID 21944752]; GO_process: GO:0006744 - ubiquinone biosynthetic process [Evidence IMP] [PMID 9266513]; putative N,N-dimethylaniline monooxygenase COQ6 731246 COQ6 30036007 COQ6 Sugiyamaella lignohabitans putative N,N-dimethylaniline monooxygenase COQ6 XP_018733609.1 729621 D 796027 CDS AWJ20_3932 30036008 731869..733311 C 1 NC_031671.1 uncharacterized protein 733311 30036008 AWJ20_3932 Sugiyamaella lignohabitans uncharacterized protein XP_018733610.1 731869 D 796027 CDS AWJ20_3933 30036009 complement(733458..734279) C 1 NC_031671.1 uncharacterized protein 734279 30036009 AWJ20_3933 Sugiyamaella lignohabitans uncharacterized protein XP_018733611.1 733458 R 796027 CDS AWJ20_3934 30036010 736051..737364 C 1 NC_031671.1 Triacylglycerol lipase that is localized to the mitochondria; has lipolytic activity towards triacylglycerols and diacylglycerols when expressed in E. coli; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 19959834]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016788 - hydrolase activity, acting on ester bonds [Evidence IEA]; GO_function: GO:0004806 - triglyceride lipase activity [Evidence IEA]; GO_function: GO:0004806 - triglyceride lipase activity [Evidence IDA,IMP] [PMID 9544243]; GO_process: GO:0006505 - GPI anchor metabolic process [Evidence IEA]; GO_process: GO:0006886 - intracellular protein transport [Evidence IEA]; GO_process: GO:0016042 - lipid catabolic process [Evidence IEA]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0019433 - triglyceride catabolic process [Evidence IMP] [PMID 19959834]; Tgl2p 737364 TGL2 30036010 TGL2 Sugiyamaella lignohabitans Tgl2p XP_018733612.1 736051 D 796027 CDS AWJ20_3935 30036011 complement(737539..738930) C 1 NC_031671.1 Mitochondrial aldehyde dehydrogenase; involved in regulation or biosynthesis of electron transport chain components and acetate formation; activated by K+; utilizes NADP+ as the preferred coenzyme; constitutively expressed; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0004029 - aldehyde dehydrogenase (NAD) activity [Evidence IDA] [PMID 9473035]; GO_function: GO:0004030 - aldehyde dehydrogenase [NAD(P)+] activity [Evidence IEA]; GO_function: GO:0004030 - aldehyde dehydrogenase [NAD(P)+] activity [Evidence IDA] [PMID 9473035]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0016620 - oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor [Evidence IEA]; GO_process: GO:0019413 - acetate biosynthetic process [Evidence IMP] [PMID 15256563]; GO_process: GO:0006068 - ethanol catabolic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; aldehyde dehydrogenase (NAD(P)(+)) ALD5 738930 ALD5 30036011 ALD5 Sugiyamaella lignohabitans aldehyde dehydrogenase (NAD(P)(+)) ALD5 XP_018733613.1 737539 R 796027 CDS AWJ20_3936 30036012 740233..741807 C 1 NC_031671.1 uncharacterized protein 741807 30036012 AWJ20_3936 Sugiyamaella lignohabitans uncharacterized protein XP_018733614.1 740233 D 796027 CDS AWJ20_3937 30036013 complement(742105..743130) C 1 NC_031671.1 uncharacterized protein 743130 30036013 AWJ20_3937 Sugiyamaella lignohabitans uncharacterized protein XP_018733615.1 742105 R 796027 CDS AWJ20_3938 30036014 746553..748787 C 1 NC_031671.1 Largest subunit of the origin recognition complex; involved in directing DNA replication by binding to replication origins; also involved in transcriptional silencing; exhibits ATPase activity; ORC1 has a paralog, SIR3, that arose from the whole genome duplication; GO_component: GO:0031261 - DNA replication preinitiation complex [Evidence IDA] [PMID 9554851]; GO_component: GO:0005664 - nuclear origin of replication recognition complex [Evidence IDA,IMP] [PMID 9372948]; GO_component: GO:0005656 - nuclear pre-replicative complex [Evidence IDA] [PMID 16824194]; GO_component: GO:0005656 - nuclear pre-replicative complex [Evidence IDA] [PMID 9335335]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11168584]; GO_component: GO:0000808 - origin recognition complex [Evidence IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0005524 - ATP binding [Evidence IDA] [PMID 17825064]; GO_function: GO:0005524 - ATP binding [Evidence IMP] [PMID 9038340]; GO_function: GO:0016887 - ATPase activity [Evidence IMP] [PMID 9038340]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0003688 - DNA replication origin binding [Evidence IDA] [PMID 16824194]; GO_function: GO:0003682 - chromatin binding [Evidence IEA]; GO_function: GO:0003682 - chromatin binding [Evidence IDA] [PMID 11168584]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_process: GO:0006260 - DNA replication [Evidence IEA,IEA]; GO_process: GO:0006270 - DNA replication initiation [Evidence IMP] [PMID 16716188]; GO_process: GO:0030466 - chromatin silencing at silent mating-type cassette [Evidence IDA] [PMID 12897051]; GO_process: GO:0030466 - chromatin silencing at silent mating-type cassette [Evidence IDA,IGI] [PMID 16581798]; GO_process: GO:0006267 - pre-replicative complex assembly involved in nuclear cell cycle DNA replication [Evidence IDA] [PMID 16824194]; GO_process: GO:0006267 - pre-replicative complex assembly involved in nuclear cell cycle DNA replication [Evidence IMP] [PMID 9335335]; origin recognition complex subunit 1 748787 ORC1 30036014 ORC1 Sugiyamaella lignohabitans origin recognition complex subunit 1 XP_018733616.1 746553 D 796027 CDS AWJ20_3939 30036015 complement(748898..749689) C 1 NC_031671.1 Phosphatidylinositol/phosphatidylcholine transfer protein; involved in regulating PtdIns, PtdCho, and ceramide metabolism, products of which regulate intracellular transport and UPR; has a role in localization of lipid raft proteins; functionally homologous to mammalian PITPs; SEC14 has a paralog, YKL091C, that arose from the whole genome duplication; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0005794 - Golgi apparatus [Evidence IDA] [PMID 1997207]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA]; GO_component: GO:0000139 - Golgi membrane [Evidence IDA] [PMID 7816798]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 1997207]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 12869188]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 2466847]; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0008525 - phosphatidylcholine transporter activity [Evidence IDA,IMP] [PMID 10488334]; GO_function: GO:0008525 - phosphatidylcholine transporter activity [Evidence IDA] [PMID 10848624]; GO_function: GO:0008525 - phosphatidylcholine transporter activity [Evidence IDA] [PMID 2407740]; GO_function: GO:0008526 - phosphatidylinositol transporter activity [Evidence IDA,IMP] [PMID 10848624]; GO_function: GO:0008526 - phosphatidylinositol transporter activity [Evidence IDA,IMP] [PMID 2215682]; GO_function: GO:0008526 - phosphatidylinositol transporter activity [Evidence IDA] [PMID 2407740]; GO_function: GO:0005215 - transporter activity [Evidence IEA]; GO_process: GO:0043001 - Golgi to plasma membrane protein transport [Evidence IMP] [PMID 10848624]; GO_process: GO:0043001 - Golgi to plasma membrane protein transport [Evidence IMP] [PMID 19129178]; GO_process: GO:0043001 - Golgi to plasma membrane protein transport [Evidence IMP] [PMID 6754086]; GO_process: GO:0006896 - Golgi to vacuole transport [Evidence IGI,IMP] [PMID 18753406]; GO_process: GO:0048194 - Golgi vesicle budding [Evidence IDA] [PMID 9553090]; GO_process: GO:0048194 - Golgi vesicle budding [Evidence IDA] [PMID 9736710]; GO_process: GO:0030437 - ascospore formation [Evidence IMP] [PMID 14528019]; GO_process: GO:2001246 - negative regulation of phosphatidylcholine biosynthetic process [Evidence IDA,IMP] [PMID 7816798]; GO_process: GO:1901352 - negative regulation of phosphatidylglycerol biosynthetic process [Evidence IMP] [PMID 12869188]; GO_process: GO:0046488 - phosphatidylinositol metabolic process [Evidence IGI,IMP] [PMID 10567405]; GO_process: GO:0015914 - phospholipid transport [Evidence IDA] [PMID 10848624]; GO_process: GO:0015914 - phospholipid transport [Evidence IDA,IMP] [PMID 2215682]; GO_process: GO:0015914 - phospholipid transport [Evidence IDA] [PMID 2407740]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; phosphatidylinositol/phosphatidylcholine transfer protein SEC14 749689 SEC14 30036015 SEC14 Sugiyamaella lignohabitans phosphatidylinositol/phosphatidylcholine transfer protein SEC14 XP_018733617.1 748898 R 796027 CDS AWJ20_3940 30036017 751932..753830 C 1 NC_031671.1 Subunit of the Nup84p subcomplex of the nuclear pore complex (NPC); contributes to nucleocytoplasmic transport and NPC biogenesis; also plays roles in several processes that may require localization of genes or chromosomes at the nuclear periphery, including double-strand break repair, transcription and chromatin silencing; homologous to human NUP107; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0031965 - nuclear membrane [Evidence IEA]; GO_component: GO:0005643 - nuclear pore [Evidence IEA,IEA,IEA]; GO_component: GO:0005643 - nuclear pore [Evidence IDA] [PMID 10684247]; GO_component: GO:0031080 - nuclear pore outer ring [Evidence IDA] [PMID 11823431]; GO_component: GO:0031080 - nuclear pore outer ring [Evidence IDA] [PMID 18046406]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_function: GO:0017056 - structural constituent of nuclear pore [Evidence IMP] [PMID 22331846]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IMP] [PMID 12482937]; GO_process: GO:0030466 - chromatin silencing at silent mating-type cassette [Evidence IDA] [PMID 21818277]; GO_process: GO:0006302 - double-strand break repair [Evidence IGI] [PMID 15725626]; GO_process: GO:0006302 - double-strand break repair [Evidence IMP] [PMID 16418532]; GO_process: GO:0006302 - double-strand break repair [Evidence IMP] [PMID 17538013]; GO_process: GO:0006406 - mRNA export from nucleus [Evidence IMP] [PMID 8565072]; GO_process: GO:0031990 - mRNA export from nucleus in response to heat stress [Evidence IMP] [PMID 18258809]; GO_process: GO:0051028 - mRNA transport [Evidence IEA]; GO_process: GO:0035392 - maintenance of chromatin silencing at telomere [Evidence IMP] [PMID 16418532]; GO_process: GO:0031081 - nuclear pore distribution [Evidence IMP] [PMID 8565072]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 22110603]; GO_process: GO:0045893 - positive regulation of transcription, DNA-templated [Evidence IDA,IGI,IMP] [PMID 15817685]; GO_process: GO:0000973 - posttranscriptional tethering of RNA polymerase II gene DNA at nuclear periphery [Evidence IMP] [PMID 20932479]; GO_process: GO:0006606 - protein import into nucleus [Evidence IMP] [PMID 12730220]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0034398 - telomere tethering at nuclear periphery [Evidence IMP] [PMID 16418532]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; Nup84p 753830 NUP84 30036017 NUP84 Sugiyamaella lignohabitans Nup84p XP_018733618.1 751932 D 796027 CDS AWJ20_3942 30036019 complement(join(754376..756696,756882..756945)) C 1 NC_031671.1 Topoisomerase I; nuclear enzyme that relieves torsional strain in DNA by cleaving and re-sealing the phosphodiester backbone; relaxes both positively and negatively supercoiled DNA; functions in replication, transcription, and recombination; role in processing ribonucleoside monophosphates in genomic DNA into irreversible single-strand breaks; GO_component: GO:0005694 - chromosome [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IPI] [PMID 10967121]; GO_component: GO:0005654 - nucleoplasm [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 6088500]; GO_component: GO:0031298 - replication fork protection complex [Evidence IDA] [PMID 16531994]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0003916 - DNA topoisomerase activity [Evidence IEA]; GO_function: GO:0003917 - DNA topoisomerase type I activity [Evidence IEA,IEA]; GO_function: GO:0003917 - DNA topoisomerase type I activity [Evidence IMP] [PMID 2989818]; GO_function: GO:0003917 - DNA topoisomerase type I activity [Evidence IDA] [PMID 6088500]; GO_function: GO:0003918 - DNA topoisomerase type II (ATP-hydrolyzing) activity [Evidence IEA]; GO_function: GO:0031490 - chromatin DNA binding [Evidence IBA]; GO_function: GO:0016853 - isomerase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0006271 - DNA strand elongation involved in DNA replication [Evidence IMP] [PMID 2549254]; GO_process: GO:0006265 - DNA topological change [Evidence IEA]; GO_process: GO:0006265 - DNA topological change [Evidence IMP] [PMID 2989818]; GO_process: GO:0006265 - DNA topological change [Evidence IDA] [PMID 6088500]; GO_process: GO:0006333 - chromatin assembly or disassembly [Evidence IMP] [PMID 9199287]; GO_process: GO:0000183 - chromatin silencing at rDNA [Evidence IMP] [PMID 10082585]; GO_process: GO:0007076 - mitotic chromosome condensation [Evidence IGI,IMP] [PMID 8895658]; GO_process: GO:0007097 - nuclear migration [Evidence IGI,IMP] [PMID 8895658]; GO_process: GO:0000019 - regulation of mitotic recombination [Evidence IMP] [PMID 2902925]; GO_process: GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 1660829]; GO_process: GO:0006368 - transcription elongation from RNA polymerase II promoter [Evidence IMP] [PMID 2840207]; DNA topoisomerase 1 756945 TOP1 30036019 TOP1 Sugiyamaella lignohabitans DNA topoisomerase 1 XP_018733619.1 754376 R 796027 CDS AWJ20_3943 30036020 complement(757564..758625) C 1 NC_031671.1 Mitochondrial protein required for assembly of cytochrome bc1 complex; forms a complex with Cbp6p that binds to mt ribosomes near the polypeptide tunnel exit and promotes efficient translation of the COB mRNA; Cbp3p-Cbp6p complex also interacts with newly synthesized cytochrome b (Cobp) and Cbp4p to promote assembly of Cobp into the cytochrome bc1 complex; Cbp3p-Cbp6p complex is sequestered if assembly of Complex III is blocked, downregulating COB mRNA translation; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 23509072]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0032592 - integral component of mitochondrial membrane [Evidence IDA] [PMID 11522252]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0031966 - mitochondrial membrane [Evidence IEA]; GO_component: GO:0005761 - mitochondrial ribosome [Evidence IDA] [PMID 21670217]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 11522252]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0043022 - ribosome binding [Evidence IDA,IPI] [PMID 21670217]; GO_process: GO:0034551 - mitochondrial respiratory chain complex III assembly [Evidence IMP] [PMID 11522252]; GO_process: GO:0034551 - mitochondrial respiratory chain complex III assembly [Evidence IMP] [PMID 15759116]; GO_process: GO:0070131 - positive regulation of mitochondrial translation [Evidence IMP] [PMID 21670217]; Cbp3p 758625 CBP3 30036020 CBP3 Sugiyamaella lignohabitans Cbp3p XP_018733620.1 757564 R 796027 CDS AWJ20_3944 30036021 758904..759806 C 1 NC_031671.1 Member of conserved ER transmembrane complex; required for efficient folding of proteins in the ER; null mutant displays induction of the unfolded protein response; homologous to worm Y57G7A.10/EMC-2, fly CG17556, human TTC35; GO_component: GO:0072546 - ER membrane protein complex [Evidence IDA] [PMID 19325107]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA,IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 14562095]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0034975 - protein folding in endoplasmic reticulum [Evidence IGI] [PMID 19325107]; Emc2p 759806 EMC2 30036021 EMC2 Sugiyamaella lignohabitans Emc2p XP_018733621.1 758904 D 796027 CDS AWJ20_3945 30036022 complement(760023..760913) C 1 NC_031671.1 Protein that interacts with Tap42p, which regulates PP2A; component of the TOR (target of rapamycin) signaling pathway; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0009968 - negative regulation of signal transduction [Evidence IEA]; GO_process: GO:0007165 - signal transduction [Evidence IMP,IPI] [PMID 11741537]; Tip41p 760913 TIP41 30036022 TIP41 Sugiyamaella lignohabitans Tip41p XP_018733622.1 760023 R 796027 CDS AWJ20_3946 30036023 complement(765914..767086) C 1 NC_031671.1 uncharacterized protein 767086 30036023 AWJ20_3946 Sugiyamaella lignohabitans uncharacterized protein XP_018733623.1 765914 R 796027 CDS AWJ20_3947 30036024 769234..770232 C 1 NC_031671.1 Glyoxylate reductase; null mutation results in increased biomass after diauxic shift; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0051287 - NAD binding [Evidence IEA]; GO_function: GO:0048037 - cofactor binding [Evidence IEA]; GO_function: GO:0047964 - glyoxylate reductase activity [Evidence IEA]; GO_function: GO:0047964 - glyoxylate reductase activity [Evidence IMP] [PMID 17173333]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor [Evidence IEA]; GO_function: GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor [Evidence ISS] [PMID 9341119]; GO_process: GO:0009436 - glyoxylate catabolic process [Evidence IMP] [PMID 17173333]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence ISS] [PMID 9341119]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; Gor1p 770232 GOR1 30036024 GOR1 Sugiyamaella lignohabitans Gor1p XP_018733624.1 769234 D 796027 CDS AWJ20_3948 30036025 complement(770433..771488) C 1 NC_031671.1 uncharacterized protein 771488 30036025 AWJ20_3948 Sugiyamaella lignohabitans uncharacterized protein XP_018733625.1 770433 R 796027 CDS AWJ20_3949 30036026 complement(776972..777658) C 1 NC_031671.1 expressed protein; uncharacterized protein 777658 30036026 AWJ20_3949 Sugiyamaella lignohabitans uncharacterized protein XP_018733626.1 776972 R 796027 CDS AWJ20_3950 30036028 781841..782137 C 1 NC_031671.1 uncharacterized protein 782137 30036028 AWJ20_3950 Sugiyamaella lignohabitans uncharacterized protein XP_018733627.1 781841 D 796027 CDS AWJ20_3951 30036029 783804..787265 C 1 NC_031671.1 Component of glucose deprivation induced stress granules; involved in P-body-dependent granule assembly; similar to human ataxin-2; interacts with Pab1p to regulate mRNA polyadenylation; interacts with Mkt1p to regulate HO translation; protein increases in abundance and relative distribution to the nucleus increases upon DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0010494 - cytoplasmic stress granule [Evidence IDA] [PMID 18981231]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11914276]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005844 - polysome [Evidence IDA] [PMID 15082763]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_process: GO:0006378 - mRNA polyadenylation [Evidence IGI,IMP,IPI] [PMID 9819425]; GO_process: GO:0045727 - positive regulation of translation [Evidence IMP,IPI] [PMID 15082763]; GO_process: GO:0034063 - stress granule assembly [Evidence IMP] [PMID 18981231]; Pbp1p 787265 PBP1 30036029 PBP1 Sugiyamaella lignohabitans Pbp1p XP_018733628.1 783804 D 796027 CDS AWJ20_3952 30036030 787754..789199 C 1 NC_031671.1 uncharacterized protein 789199 30036030 AWJ20_3952 Sugiyamaella lignohabitans uncharacterized protein XP_018733629.1 787754 D 796027 CDS AWJ20_3953 30036031 789406..791118 C 1 NC_031671.1 Component of the core factor (CF) rDNA transcription factor complex; CF is required for transcription of 35S rRNA genes by RNA polymerase I and is composed of Rrn6p, Rrn7p, and Rrn11p; GO_component: GO:0070860 - RNA polymerase I core factor complex [Evidence IDA] [PMID 7958901]; GO_component: GO:0070860 - RNA polymerase I core factor complex [Evidence IDA] [PMID 8702872]; GO_component: GO:0070860 - RNA polymerase I core factor complex [Evidence IDA] [PMID 8887672]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 22362748]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0001164 - RNA polymerase I CORE element sequence-specific DNA binding [Evidence IDA] [PMID 18451108]; GO_function: GO:0001187 - RNA polymerase I CORE element sequence-specific DNA binding transcription factor recruiting transcription factor activity [Evidence IC]; GO_function: GO:0017025 - TBP-class protein binding [Evidence IDA,IPI] [PMID 8702872]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006361 - transcription initiation from RNA polymerase I promoter [Evidence NAS] [PMID 7958901]; GO_process: GO:0042790 - transcription of nuclear large rRNA transcript from RNA polymerase I promoter [Evidence IDA,IMP] [PMID 7958901]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Rrn7p 791118 RRN7 30036031 RRN7 Sugiyamaella lignohabitans Rrn7p XP_018733630.1 789406 D 796027 CDS AWJ20_3954 30036032 complement(791308..792243) C 1 NC_031671.1 Thymidylate synthase; required for de novo biosynthesis of pyrimidine deoxyribonucleotides; expression is induced at G1/S; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 8132557]; GO_function: GO:0008168 - methyltransferase activity [Evidence IEA]; GO_function: GO:0004799 - thymidylate synthase activity [Evidence IEA,IEA]; GO_function: GO:0004799 - thymidylate synthase activity [Evidence IMP] [PMID 334734]; GO_function: GO:0004799 - thymidylate synthase activity [Evidence IDA] [PMID 6287238]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006231 - dTMP biosynthetic process [Evidence IEA]; GO_process: GO:0006231 - dTMP biosynthetic process [Evidence IMP] [PMID 334734]; GO_process: GO:0006231 - dTMP biosynthetic process [Evidence IMP] [PMID 794696]; GO_process: GO:0006235 - dTTP biosynthetic process [Evidence IEA]; GO_process: GO:0032259 - methylation [Evidence IEA]; GO_process: GO:0009165 - nucleotide biosynthetic process [Evidence IEA]; thymidylate synthase 792243 CDC21 30036032 CDC21 Sugiyamaella lignohabitans thymidylate synthase XP_018733631.1 791308 R 796027 CDS AWJ20_3956 30036034 join(798789..799029,799108..802895) C 1 NC_031671.1 protein phosphatase regulator GIP3 802895 GIP3 30036034 GIP3 Sugiyamaella lignohabitans protein phosphatase regulator GIP3 XP_018733632.1 798789 D 796027 CDS AWJ20_3957 30036035 complement(803096..803986) C 1 NC_031671.1 Ribosomal 60S subunit protein L5; homologous to mammalian ribosomal protein L5 and bacterial L18; binds 5S rRNA and is required for 60S subunit assembly; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0022625 - cytosolic large ribosomal subunit [Evidence IDA] [PMID 11983894]; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA,IEA]; GO_function: GO:0008097 - 5S rRNA binding [Evidence IEA]; GO_function: GO:0008097 - 5S rRNA binding [Evidence IDA] [PMID 8764831]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0019843 - rRNA binding [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IC] [PMID 11983894]; GO_process: GO:0002181 - cytoplasmic translation [Evidence IC] [PMID 11983894]; GO_process: GO:0000027 - ribosomal large subunit assembly [Evidence IMP] [PMID 8474444]; GO_process: GO:0006412 - translation [Evidence IEA]; ribosomal 60S subunit protein L5 803986 RPL5 30036035 RPL5 Sugiyamaella lignohabitans ribosomal 60S subunit protein L5 XP_018733633.1 803096 R 796027 CDS AWJ20_3958 30036036 complement(807826..808116) C 1 NC_031671.1 Putative glutamine amidotransferase; has Aft1p-binding motif in the promoter; may be involved in copper and iron homeostasis; YLR126C is not an essential protein; relocalizes from nucleus to cytoplasmic foci upon DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006878 - cellular copper ion homeostasis [Evidence IEP,ISS] [PMID 14534306]; GO_process: GO:0006879 - cellular iron ion homeostasis [Evidence IEP,ISS] [PMID 14534306]; GO_process: GO:0006541 - glutamine metabolic process [Evidence IEA]; putative amidotransferase 808116 30036036 AWJ20_3958 Sugiyamaella lignohabitans putative amidotransferase XP_018733634.1 807826 R 796027 CDS AWJ20_3959 30036037 complement(808285..808620) C 1 NC_031671.1 amidotransferase (predicted) 808620 30036037 AWJ20_3959 Sugiyamaella lignohabitans amidotransferase (predicted) XP_018733635.1 808285 R 796027 CDS AWJ20_3960 30036039 complement(809345..810463) C 1 NC_031671.1 uncharacterized protein 810463 30036039 AWJ20_3960 Sugiyamaella lignohabitans uncharacterized protein XP_018733636.1 809345 R 796027 CDS AWJ20_3961 30036040 complement(811717..812742) C 1 NC_031671.1 Subunit of the telomeric Ku complex (Yku70p-Yku80p); involved in telomere length maintenance, structure and telomere position effect; required for localization of telomerase ribonucleoprotein to nucleus via interaction with the TLC1 guide RNA; relocates to sites of double-strand cleavage to promote nonhomologous end joining during DSB repair; GO_component: GO:0043564 - Ku70:Ku80 complex [Evidence IEA]; GO_component: GO:0043564 - Ku70:Ku80 complex [Evidence IDA] [PMID 8754818]; GO_component: GO:0005694 - chromosome [Evidence IEA]; GO_component: GO:0000781 - chromosome, telomeric region [Evidence IEA,IEA]; GO_component: GO:0000790 - nuclear chromatin [Evidence TAS] [PMID 10367891]; GO_component: GO:0005635 - nuclear envelope [Evidence IDA] [PMID 10638763]; GO_component: GO:0005724 - nuclear telomeric heterochromatin [Evidence TAS] [PMID 12080091]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0004003 - ATP-dependent DNA helicase activity [Evidence IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0003723 - RNA binding [Evidence IDA] [PMID 12975323]; GO_function: GO:0003684 - damaged DNA binding [Evidence IEA]; GO_function: GO:0003684 - damaged DNA binding [Evidence TAS] [PMID 10367891]; GO_function: GO:0004386 - helicase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0042162 - telomeric DNA binding [Evidence IEA]; GO_process: GO:0032508 - DNA duplex unwinding [Evidence IEA]; GO_process: GO:0006310 - DNA recombination [Evidence IEA]; GO_process: GO:0006281 - DNA repair [Evidence IEA]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0006333 - chromatin assembly or disassembly [Evidence IDA] [PMID 11553718]; GO_process: GO:0006342 - chromatin silencing [Evidence IDA,IMP] [PMID 9501103]; GO_process: GO:0030466 - chromatin silencing at silent mating-type cassette [Evidence IGI,IMP] [PMID 18791224]; GO_process: GO:0000727 - double-strand break repair via break-induced replication [Evidence IGI,IMP] [PMID 17321803]; GO_process: GO:0000724 - double-strand break repair via homologous recombination [Evidence IMP] [PMID 11016833]; GO_process: GO:0006303 - double-strand break repair via nonhomologous end joining [Evidence IEA]; GO_process: GO:0006303 - double-strand break repair via nonhomologous end joining [Evidence IMP] [PMID 10908335]; GO_process: GO:0097552 - mitochondrial double-strand break repair via homologous recombination [Evidence IMP] [PMID 22214610]; GO_process: GO:0000723 - telomere maintenance [Evidence IEA]; GO_process: GO:0000723 - telomere maintenance [Evidence IMP] [PMID 10818099]; Yku70p 812742 YKU70 30036040 YKU70 Sugiyamaella lignohabitans Yku70p XP_018733637.1 811717 R 796027 CDS AWJ20_3962 30036041 complement(812890..813144) C 1 NC_031671.1 ATP-dependent DNA helicase II subunit 1 813144 30036041 AWJ20_3962 Sugiyamaella lignohabitans ATP-dependent DNA helicase II subunit 1 XP_018733638.1 812890 R 796027 CDS AWJ20_3963 30036042 814621..820464 C 1 NC_031671.1 DNA polymerase epsilon catalytic subunit 820464 POL2 30036042 POL2 Sugiyamaella lignohabitans DNA polymerase epsilon catalytic subunit XP_018733639.1 814621 D 796027 CDS AWJ20_3964 30036043 complement(820501..820794) C 1 NC_031671.1 Protein that recognizes and binds damaged DNA during NER; subunit of Nucleotide Excision Repair Factor 1 (NEF1); contains zinc finger motif; homolog of human XPA protein; NER stands for nucleotide excision repair; GO_component: GO:0000110 - nucleotide-excision repair factor 1 complex [Evidence IPI] [PMID 8621533]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9852079]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0003684 - damaged DNA binding [Evidence IEA]; GO_function: GO:0003684 - damaged DNA binding [Evidence IDA] [PMID 23925126]; GO_function: GO:0003684 - damaged DNA binding [Evidence IDA] [PMID 8516285]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IDA] [PMID 8516285]; GO_process: GO:0006281 - DNA repair [Evidence IEA]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0006289 - nucleotide-excision repair [Evidence IEA]; GO_process: GO:0000715 - nucleotide-excision repair, DNA damage recognition [Evidence IDA] [PMID 8516285]; Rad14p 820794 RAD14 30036043 RAD14 Sugiyamaella lignohabitans Rad14p XP_018733640.1 820501 R 796027 CDS AWJ20_3965 30036044 822754..823404 C 1 NC_031671.1 Subunit of the origin recognition complex (ORC); ORC directs DNA replication by binding to replication origins and is also involved in transcriptional silencing; GO_component: GO:0031261 - DNA replication preinitiation complex [Evidence IDA] [PMID 9554851]; GO_component: GO:0005664 - nuclear origin of replication recognition complex [Evidence IDA,IMP] [PMID 9372948]; GO_component: GO:0005656 - nuclear pre-replicative complex [Evidence IDA] [PMID 16824194]; GO_component: GO:0005656 - nuclear pre-replicative complex [Evidence IDA] [PMID 9335335]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0000808 - origin recognition complex [Evidence IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0005524 - ATP binding [Evidence IMP] [PMID 9038340]; GO_function: GO:0003688 - DNA replication origin binding [Evidence IDA] [PMID 16824194]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006260 - DNA replication [Evidence IEA,IEA]; GO_process: GO:0006270 - DNA replication initiation [Evidence IMP] [PMID 16716188]; GO_process: GO:0006270 - DNA replication initiation [Evidence IGI,IMP] [PMID 7579692]; GO_process: GO:0030466 - chromatin silencing at silent mating-type cassette [Evidence IDA] [PMID 12897051]; GO_process: GO:0006267 - pre-replicative complex assembly involved in nuclear cell cycle DNA replication [Evidence IDA] [PMID 16824194]; GO_process: GO:0031938 - regulation of chromatin silencing at telomere [Evidence IMP] [PMID 16980387]; origin recognition complex subunit 5 823404 ORC5 30036044 ORC5 Sugiyamaella lignohabitans origin recognition complex subunit 5 XP_018733641.1 822754 D 796027 CDS AWJ20_3966 30036045 complement(823526..825286) C 1 NC_031671.1 Endosomal protein that forms a complex with Hse1p; required for recycling Golgi proteins, forming lumenal membranes and sorting ubiquitinated proteins destined for degradation; has Ubiquitin Interaction Motifs which bind ubiquitin (Ubi4p); GO_component: GO:0033565 - ESCRT-0 complex [Evidence IPI] [PMID 12055639]; GO_component: GO:0005768 - endosome [Evidence IEA]; GO_component: GO:0005768 - endosome [Evidence IDA] [PMID 12055639]; GO_component: GO:0010008 - endosome membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA,IEA]; GO_function: GO:0032266 - phosphatidylinositol-3-phosphate binding [Evidence IDA] [PMID 9702203]; GO_function: GO:0043130 - ubiquitin binding [Evidence IDA] [PMID 12055639]; GO_function: GO:0043130 - ubiquitin binding [Evidence IDA] [PMID 20150893]; GO_process: GO:0006886 - intracellular protein transport [Evidence IEA]; GO_process: GO:0045324 - late endosome to vacuole transport [Evidence IMP] [PMID 12055639]; GO_process: GO:0045053 - protein retention in Golgi apparatus [Evidence IMP] [PMID 8649377]; GO_process: GO:0006623 - protein targeting to vacuole [Evidence IMP,IPI] [PMID 12055639]; ESCRT-0 subunit protein VPS27 825286 VPS27 30036045 VPS27 Sugiyamaella lignohabitans ESCRT-0 subunit protein VPS27 XP_018733642.1 823526 R 796027 CDS AWJ20_3967 30036046 join(825831..825899,826146..826754) C 1 NC_031671.1 Protein with positive role in the multivesicular body sorting pathway; functions and forms a complex with Did2p; recruitment to endosomes is mediated by the Vps2p-Vps24p subcomplex of ESCRT-III; also interacts with Vps4p; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 18032584]; GO_component: GO:0005768 - endosome [Evidence IEA,IEA]; GO_component: GO:0005768 - endosome [Evidence IDA] [PMID 14562095]; GO_component: GO:0005768 - endosome [Evidence IDA] [PMID 18032584]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0032511 - late endosome to vacuole transport via multivesicular body sorting pathway [Evidence IGI] [PMID 18032584]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Ist1p 826754 IST1 30036046 IST1 Sugiyamaella lignohabitans Ist1p XP_018733643.1 825831 D 796027 CDS AWJ20_3968 30036047 complement(826881..827792) C 1 NC_031671.1 Mitochondrial phosphatidate cytidylyltransferase (CDP-DAG synthase); required for cardiolipin biosynthesis; viability of null mutant is strain-dependent; mRNA is targeted to the bud; mutant displays defect in mitochondrial protein import, likely due to altered membrane lipid composition; GO_component: GO:0031314 - extrinsic component of mitochondrial inner membrane [Evidence IDA] [PMID 16790493]; GO_component: GO:0031314 - extrinsic component of mitochondrial inner membrane [Evidence IDA] [PMID 16943180]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA]; GO_component: GO:0005759 - mitochondrial matrix [Evidence IDA] [PMID 16790493]; GO_component: GO:0005759 - mitochondrial matrix [Evidence IDA] [PMID 16943180]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14690591]; GO_function: GO:0004605 - phosphatidate cytidylyltransferase activity [Evidence IDA,IMP] [PMID 23623749]; GO_process: GO:0032049 - cardiolipin biosynthetic process [Evidence IMP] [PMID 19114592]; GO_process: GO:0032049 - cardiolipin biosynthetic process [Evidence IGI] [PMID 20485265]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Tam41p 827792 TAM41 30036047 TAM41 Sugiyamaella lignohabitans Tam41p XP_018733644.1 826881 R 796027 CDS AWJ20_3970 30036050 complement(832165..833886) C 1 NC_031671.1 Phosphoesterase; involved in downregulation of the unfolded protein response (UPR), at least in part via dephosphorylation of Ire1p; dosage-dependent positive regulator of the G1/S phase transition through control of the timing of START; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA,IEA]; GO_function: GO:0016788 - hydrolase activity, acting on ester bonds [Evidence IMP,ISS] [PMID 15590836]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0004721 - phosphoprotein phosphatase activity [Evidence IDA,IMP] [PMID 17673172]; GO_function: GO:0042578 - phosphoric ester hydrolase activity [Evidence IDA] [PMID 16990850]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0030968 - endoplasmic reticulum unfolded protein response [Evidence IGI,IMP] [PMID 16990850]; GO_process: GO:0006470 - protein dephosphorylation [Evidence IDA] [PMID 16990850]; GO_process: GO:0006470 - protein dephosphorylation [Evidence IDA,IMP] [PMID 17673172]; GO_process: GO:0007089 - traversing start control point of mitotic cell cycle [Evidence IMP] [PMID 15590836]; Dcr2p 833886 DCR2 30036050 DCR2 Sugiyamaella lignohabitans Dcr2p XP_018733645.1 832165 R 796027 CDS AWJ20_3971 30036051 complement(834153..834722) C 1 NC_031671.1 Putative PINc domain nuclease; required for early cleavages of 35S pre-rRNA and maturation of 18S rRNA; component of the SSU (small subunit) processome involved in 40S ribosomal subunit biogenesis; copurifies with Faf1p; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 16762320]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 16769905]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0032040 - small-subunit processome [Evidence IEA]; GO_component: GO:0032040 - small-subunit processome [Evidence IDA,IPI] [PMID 16769905]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0000480 - endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 16762320]; GO_process: GO:0000480 - endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 16769905]; GO_process: GO:0000447 - endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 16762320]; GO_process: GO:0000447 - endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 16769905]; GO_process: GO:0000472 - endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 16762320]; GO_process: GO:0000472 - endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 16769905]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; Fcf1p 834722 FCF1 30036051 FCF1 Sugiyamaella lignohabitans Fcf1p XP_018733646.1 834153 R 796027 CDS AWJ20_3972 30036052 835067..837961 C 1 NC_031671.1 tethering complex subunit PEP5 837961 PEP5 30036052 PEP5 Sugiyamaella lignohabitans tethering complex subunit PEP5 XP_018733647.1 835067 D 796027 CDS AWJ20_3973 30036053 complement(838154..840124) C 1 NC_031671.1 Arginyl-tRNA synthetase; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies; YDR341C has a paralog, MSR1, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004812 - aminoacyl-tRNA ligase activity [Evidence IEA,IEA]; GO_function: GO:0004814 - arginine-tRNA ligase activity [Evidence IEA,IEA]; GO_function: GO:0004814 - arginine-tRNA ligase activity [Evidence IDA] [PMID 9622124]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_process: GO:0006420 - arginyl-tRNA aminoacylation [Evidence IEA]; GO_process: GO:0006420 - arginyl-tRNA aminoacylation [Evidence IDA] [PMID 9622124]; GO_process: GO:0006418 - tRNA aminoacylation for protein translation [Evidence IEA]; GO_process: GO:0006412 - translation [Evidence IEA]; arginine--tRNA ligase 840124 30036053 AWJ20_3973 Sugiyamaella lignohabitans arginine--tRNA ligase XP_018733648.1 838154 R 796027 CDS AWJ20_3974 30036054 840468..841616 C 1 NC_031671.1 uncharacterized protein 841616 30036054 AWJ20_3974 Sugiyamaella lignohabitans uncharacterized protein XP_018733649.1 840468 D 796027 CDS AWJ20_3975 30036055 complement(841645..843585) C 1 NC_031671.1 gephyrin 843585 30036055 AWJ20_3975 Sugiyamaella lignohabitans gephyrin XP_018733650.1 841645 R 796027 CDS AWJ20_3976 30036056 844164..845768 C 1 NC_031671.1 Proline permease; required for high-affinity transport of proline; also transports the toxic proline analog azetidine-2-carboxylate (AzC); PUT4 transcription is repressed in ammonia-grown cells; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence ISS] [PMID 10654085]; GO_function: GO:0015193 - L-proline transmembrane transporter activity [Evidence IGI] [PMID 14968425]; GO_function: GO:0015193 - L-proline transmembrane transporter activity [Evidence IMP] [PMID 3552672]; GO_function: GO:0015171 - amino acid transmembrane transporter activity [Evidence IEA]; GO_function: GO:0015175 - neutral amino acid transmembrane transporter activity [Evidence IDA] [PMID 10654085]; GO_process: GO:0003333 - amino acid transmembrane transport [Evidence IEA]; GO_process: GO:0006865 - amino acid transport [Evidence IEA,IEA]; GO_process: GO:0015812 - gamma-aminobutyric acid transport [Evidence IDA,IGI] [PMID 8455553]; GO_process: GO:0015804 - neutral amino acid transport [Evidence IDA] [PMID 10654085]; GO_process: GO:0015824 - proline transport [Evidence IDA] [PMID 10654085]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; proline permease PUT4 845768 PUT4 30036056 PUT4 Sugiyamaella lignohabitans proline permease PUT4 XP_018733651.1 844164 D 796027 CDS AWJ20_3977 30036057 846185..847399 C 1 NC_031671.1 Subunit of the tRNA splicing endonuclease; tRNA splicing endonuclease is composed of Sen2p, Sen15p, Sen34p, and Sen54p; Sen2p contains the active site for tRNA 5' splice site cleavage and has similarity to Sen34p and to Archaeal tRNA splicing endonuclease; GO_component: GO:0012505 - endomembrane system [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IEA,IEA]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IDA,IMP] [PMID 12925762]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IDA] [PMID 16407407]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0000214 - tRNA-intron endonuclease complex [Evidence IEA]; GO_component: GO:0000214 - tRNA-intron endonuclease complex [Evidence IDA] [PMID 9200603]; GO_function: GO:0016829 - lyase activity [Evidence IEA]; GO_function: GO:0004518 - nuclease activity [Evidence IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000213 - tRNA-intron endonuclease activity [Evidence IEA]; GO_function: GO:0000213 - tRNA-intron endonuclease activity [Evidence IMP] [PMID 2182322]; GO_function: GO:0000213 - tRNA-intron endonuclease activity [Evidence IDA] [PMID 9200603]; GO_process: GO:0090501 - RNA phosphodiester bond hydrolysis [Evidence IEA]; GO_process: GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic [Evidence IEA]; GO_process: GO:0090305 - nucleic acid phosphodiester bond hydrolysis [Evidence IEA]; GO_process: GO:0008033 - tRNA processing [Evidence IEA]; GO_process: GO:0006388 - tRNA splicing, via endonucleolytic cleavage and ligation [Evidence IEA]; GO_process: GO:0000379 - tRNA-type intron splice site recognition and cleavage [Evidence IMP] [PMID 2182322]; GO_process: GO:0000379 - tRNA-type intron splice site recognition and cleavage [Evidence IDA] [PMID 9200603]; Sen2p 847399 SEN2 30036057 SEN2 Sugiyamaella lignohabitans Sen2p XP_018733652.1 846185 D 796027 CDS AWJ20_3978 30036058 850123..850623 C 1 NC_031671.1 uncharacterized protein 850623 30036058 AWJ20_3978 Sugiyamaella lignohabitans uncharacterized protein XP_018733653.1 850123 D 796027 CDS AWJ20_3979 30036059 complement(850722..851177) C 1 NC_031671.1 uncharacterized protein 851177 30036059 AWJ20_3979 Sugiyamaella lignohabitans uncharacterized protein XP_018733654.1 850722 R 796027 CDS AWJ20_3980 30036061 complement(852101..852478) C 1 NC_031671.1 splicing factor, SYF2 family 852478 30036061 AWJ20_3980 Sugiyamaella lignohabitans splicing factor, SYF2 family XP_018733655.1 852101 R 796027 CDS AWJ20_3981 30036062 855167..856948 C 1 NC_031671.1 uncharacterized protein 856948 30036062 AWJ20_3981 Sugiyamaella lignohabitans uncharacterized protein XP_018733656.1 855167 D 796027 CDS AWJ20_3982 30036063 857672..860077 C 1 NC_031671.1 Subunit of the SWI/SNF chromatin remodeling complex; involved in transcriptional regulation; functions interdependently in transcriptional activation with Snf2p and Snf6p; relocates to the cytosol under hypoxic conditions; GO_component: GO:0016514 - SWI/SNF complex [Evidence IDA] [PMID 18644858]; GO_component: GO:0016514 - SWI/SNF complex [Evidence IDA] [PMID 8016655]; GO_component: GO:0016514 - SWI/SNF complex [Evidence IDA] [PMID 8127913]; GO_component: GO:0016514 - SWI/SNF complex [Evidence IDA,IMP] [PMID 8159677]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 22932476]; GO_component: GO:0000228 - nuclear chromosome [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 2233708]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22932476]; GO_function: GO:0015616 - DNA translocase activity [Evidence IDA] [PMID 17188033]; GO_function: GO:0001102 - RNA polymerase II activating transcription factor binding [Evidence IPI] [PMID 11865042]; GO_function: GO:0001102 - RNA polymerase II activating transcription factor binding [Evidence IMP,IPI] [PMID 14580348]; GO_process: GO:0000436 - carbon catabolite activation of transcription from RNA polymerase II promoter [Evidence IGI] [PMID 14580348]; GO_process: GO:0006338 - chromatin remodeling [Evidence IEA]; GO_process: GO:0006338 - chromatin remodeling [Evidence IGI,IMP] [PMID 1459453]; GO_process: GO:0000724 - double-strand break repair via homologous recombination [Evidence IMP] [PMID 16024655]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 1339306]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IGI] [PMID 1901413]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 3542227]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0005987 - sucrose catabolic process [Evidence IMP] [PMID 6392017]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Snf5p 860077 SNF5 30036063 SNF5 Sugiyamaella lignohabitans Snf5p XP_018733657.1 857672 D 796027 CDS AWJ20_3983 30036064 complement(860200..861897) C 1 NC_031671.1 Cytoplasmic and mitochondrial histidine tRNA synthetase; efficient mitochondrial localization requires both a presequence and an amino-terminal sequence; mutations in human ortholog HARS2 are associated with Perrault syndrome; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IMP] [PMID 3521891]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IMP] [PMID 3521891]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004812 - aminoacyl-tRNA ligase activity [Evidence IEA,IEA]; GO_function: GO:0004812 - aminoacyl-tRNA ligase activity [Evidence IDA] [PMID 16741232]; GO_function: GO:0004821 - histidine-tRNA ligase activity [Evidence IEA,IEA]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_process: GO:0006427 - histidyl-tRNA aminoacylation [Evidence IEA]; GO_process: GO:0006427 - histidyl-tRNA aminoacylation [Evidence IMP] [PMID 1459448]; GO_process: GO:0006427 - histidyl-tRNA aminoacylation [Evidence IDA] [PMID 16741232]; GO_process: GO:0032543 - mitochondrial translation [Evidence IGI] [PMID 16777356]; GO_process: GO:0006418 - tRNA aminoacylation for protein translation [Evidence IEA]; GO_process: GO:0006412 - translation [Evidence IEA]; histidine--tRNA ligase 861897 HTS1 30036064 HTS1 Sugiyamaella lignohabitans histidine--tRNA ligase XP_018733658.1 860200 R 796027 CDS AWJ20_3984 30036065 862339..863472 C 1 NC_031671.1 TFIIE large subunit; involved in recruitment of RNA polymerase II to the promoter, activation of TFIIH, and promoter opening; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005673 - transcription factor TFIIE complex [Evidence IDA] [PMID 1429681]; GO_component: GO:0005673 - transcription factor TFIIE complex [Evidence IDA] [PMID 7961670]; GO_function: GO:0000993 - RNA polymerase II core binding [Evidence IPI] [PMID 11779853]; GO_function: GO:0000993 - RNA polymerase II core binding [Evidence IDA] [PMID 8702741]; GO_function: GO:0001097 - TFIIH-class transcription factor binding [Evidence IDA] [PMID 8702741]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO_function: GO:0003697 - single-stranded DNA binding [Evidence IDA] [PMID 9271406]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IDA] [PMID 1331084]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IDA] [PMID 1429681]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IDA] [PMID 7961670]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IMP] [PMID 9188494]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IMP] [PMID 9271406]; GO_process: GO:0006367 - transcription initiation from RNA polymerase II promoter [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; GO_process: GO:0001113 - transcriptional open complex formation at RNA polymerase II promoter [Evidence IDA,IGI] [PMID 10973956]; Tfa1p 863472 TFA1 30036065 TFA1 Sugiyamaella lignohabitans Tfa1p XP_018733659.1 862339 D 796027 CDS AWJ20_3985 30036066 complement(864284..866941) C 1 NC_031671.1 uncharacterized protein 866941 30036066 AWJ20_3985 Sugiyamaella lignohabitans uncharacterized protein XP_018733660.1 864284 R 796027 CDS AWJ20_3986 30036067 complement(868717..869025) C 1 NC_031671.1 Proteolipid subunit c of the V0 domain of vacuolar H(+)-ATPase; dicyclohexylcarbodiimide binding subunit; required for vacuolar acidification and important for copper and iron metal ion homeostasis; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016021 - integral component of membrane [Evidence IDA] [PMID 15252052]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0033179 - proton-transporting V-type ATPase, V0 domain [Evidence IEA]; GO_component: GO:0033177 - proton-transporting two-sector ATPase complex, proton-transporting domain [Evidence IEA]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0000220 - vacuolar proton-transporting V-type ATPase, V0 domain [Evidence TAS] [PMID 10224039]; GO_component: GO:0000220 - vacuolar proton-transporting V-type ATPase, V0 domain [Evidence TAS] [PMID 9442887]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0015078 - hydrogen ion transmembrane transporter activity [Evidence IEA]; GO_function: GO:0015078 - hydrogen ion transmembrane transporter activity [Evidence TAS] [PMID 12482875]; GO_process: GO:0015991 - ATP hydrolysis coupled proton transport [Evidence IEA]; GO_process: GO:0006878 - cellular copper ion homeostasis [Evidence IMP] [PMID 9434348]; GO_process: GO:0006879 - cellular iron ion homeostasis [Evidence IMP] [PMID 9434348]; GO_process: GO:0006897 - endocytosis [Evidence IMP] [PMID 2145283]; GO_process: GO:0006811 - ion transport [Evidence IEA]; GO_process: GO:0006623 - protein targeting to vacuole [Evidence IMP] [PMID 2145283]; GO_process: GO:0015992 - proton transport [Evidence IEA]; GO_process: GO:0015992 - proton transport [Evidence TAS] [PMID 12482875]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0007035 - vacuolar acidification [Evidence TAS] [PMID 10224039]; GO_process: GO:0007035 - vacuolar acidification [Evidence TAS] [PMID 9442887]; GO_process: GO:0007033 - vacuole organization [Evidence IMP] [PMID 2145283]; H(+)-transporting V0 sector ATPase subunit c 869025 VMA3 30036067 VMA3 Sugiyamaella lignohabitans H(+)-transporting V0 sector ATPase subunit c XP_018733661.1 868717 R 796027 CDS AWJ20_3987 30036068 complement(870547..871992) C 1 NC_031671.1 Member of the NineTeen Complex (NTC); this complex contains Prp19p and stabilizes U6 snRNA in catalytic forms of the spliceosome containing U2, U5, and U6 snRNAs; GO_component: GO:0000974 - Prp19 complex [Evidence IPI] [PMID 12088152]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005681 - spliceosomal complex [Evidence IEA]; GO_component: GO:0005681 - spliceosomal complex [Evidence IDA] [PMID 11884590]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008380 - RNA splicing [Evidence IEA]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0000398 - mRNA splicing, via spliceosome [Evidence IMP] [PMID 12554883]; Prp46p 871992 PRP46 30036068 PRP46 Sugiyamaella lignohabitans Prp46p XP_018733662.1 870547 R 796027 CDS AWJ20_3988 30036069 884483..885475 C 1 NC_031671.1 Putative prenyltransferase; required for cell viability; proposed to be involved in protein trafficking because tet-repressible mutant shows accumulation of hypoglycosylated forms of CPY; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 11086160]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0005811 - lipid particle [Evidence IEA,IEA]; GO_component: GO:0005811 - lipid particle [Evidence IDA] [PMID 10515935]; GO_component: GO:0005811 - lipid particle [Evidence IDA] [PMID 14690591]; GO_component: GO:0005811 - lipid particle [Evidence IDA] [PMID 24390141]; GO_component: GO:0005811 - lipid particle [Evidence IDA] [PMID 24868093]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005635 - nuclear envelope [Evidence IDA] [PMID 14690591]; GO_component: GO:0031965 - nuclear membrane [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_function: GO:0008834 - di-trans,poly-cis-decaprenylcistransferase activity [Evidence IEA]; GO_function: GO:0004659 - prenyltransferase activity [Evidence ISS] [PMID 14690591]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016765 - transferase activity, transferring alkyl or aryl (other than methyl) groups [Evidence IEA]; GO_process: GO:0006486 - protein glycosylation [Evidence IMP] [PMID 16943325]; Nus1p 885475 NUS1 30036069 NUS1 Sugiyamaella lignohabitans Nus1p XP_018733663.1 884483 D 796027 CDS AWJ20_3989 30036070 885790..888651 C 1 NC_031671.1 Subunit of SEA (Seh1-associated), Npr2/3, and Iml1p complexes; Npr2/3 complex mediates downregulation of TORC1 activity upon amino acid limitation; SEA complex is a coatomer-related complex that associates dynamically with the vacuole; Iml1p complex (Iml1p-Npr2p-Npr3p) is required for non-nitrogen-starvation (NNS)-induced autophagy; required for Npr2p phosphorylation and Iml1p-Npr2p interaction; null mutant shows delayed meiotic DNA replication and double-strand break repair; GO_component: GO:1990130 - Iml1 complex [Evidence IDA] [PMID 21900499]; GO_component: GO:0035859 - Seh1-associated complex [Evidence IDA] [PMID 21454883]; GO_component: GO:0097042 - extrinsic component of fungal-type vacuolar membrane [Evidence IDA] [PMID 21454883]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0034198 - cellular response to amino acid starvation [Evidence IMP] [PMID 19521502]; GO_process: GO:0007126 - meiotic nuclear division [Evidence IEA]; GO_process: GO:0007126 - meiotic nuclear division [Evidence IMP] [PMID 18069899]; GO_process: GO:0032007 - negative regulation of TOR signaling [Evidence IMP] [PMID 19521502]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0007124 - pseudohyphal growth [Evidence IMP] [PMID 24603354]; GO_process: GO:2000785 - regulation of autophagic vacuole assembly [Evidence IMP] [PMID 21900499]; GO_process: GO:0006810 - transport [Evidence IEA]; Npr3p 888651 NPR3 30036070 NPR3 Sugiyamaella lignohabitans Npr3p XP_018733664.1 885790 D 796027 CDS AWJ20_3990 30036072 complement(888921..889427) C 1 NC_031671.1 Ubiquitin-conjugating enzyme that regulates gluconeogenesis; negatively regulates gluconeogenesis by mediating the glucose-induced ubiquitination of fructose-1,6-bisphosphatase (FBPase); cytoplasmic enzyme that catalyzes the ubiquitination of histones in vitro; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 10811607]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0016881 - acid-amino acid ligase activity [Evidence IEA]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence IEA]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence IDA] [PMID 1869573]; GO_process: GO:0045721 - negative regulation of gluconeogenesis [Evidence IMP] [PMID 12686616]; GO_process: GO:0043161 - proteasome-mediated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 12686616]; GO_process: GO:0016567 - protein ubiquitination [Evidence IEA]; GO_process: GO:0042787 - protein ubiquitination involved in ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 10811607]; E2 ubiquitin-conjugating protein UBC8 889427 UBC8 30036072 UBC8 Sugiyamaella lignohabitans E2 ubiquitin-conjugating protein UBC8 XP_018733665.1 888921 R 796027 CDS AWJ20_3991 30036073 890923..892407 C 1 NC_031671.1 Nem1-Spo7 phosphatase regulatory subunit SPO7 892407 SPO7 30036073 SPO7 Sugiyamaella lignohabitans Nem1-Spo7 phosphatase regulatory subunit SPO7 XP_018733666.1 890923 D 796027 CDS AWJ20_3992 30036074 893079..896186 C 1 NC_031671.1 ER membrane localized phosphoryltransferase; adds phosphoethanolamine onto the third mannose residue of the glycosylphosphatidylinositol (GPI) anchor precursor; similar to human PIG-O protein; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence ISS] [PMID 10793139]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0051377 - mannose-ethanolamine phosphotransferase activity [Evidence IMP] [PMID 12441642]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016772 - transferase activity, transferring phosphorus-containing groups [Evidence IMP] [PMID 10793139]; GO_process: GO:0006506 - GPI anchor biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0006506 - GPI anchor biosynthetic process [Evidence IMP] [PMID 10793139]; GO_process: GO:0006506 - GPI anchor biosynthetic process [Evidence IMP] [PMID 12441642]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; Gpi13p 896186 GPI13 30036074 GPI13 Sugiyamaella lignohabitans Gpi13p XP_018733667.1 893079 D 796027 CDS AWJ20_3993 30036075 complement(896334..897368) C 1 NC_031671.1 uncharacterized protein 897368 30036075 AWJ20_3993 Sugiyamaella lignohabitans uncharacterized protein XP_018733668.1 896334 R 796027 CDS AWJ20_3994 30036076 complement(897589..900696) C 1 NC_031671.1 uncharacterized protein 900696 30036076 AWJ20_3994 Sugiyamaella lignohabitans uncharacterized protein XP_018733669.1 897589 R 796027 CDS AWJ20_3995 30036077 complement(901035..903077) C 1 NC_031671.1 uncharacterized protein 903077 30036077 AWJ20_3995 Sugiyamaella lignohabitans uncharacterized protein XP_018733670.1 901035 R 796027 CDS AWJ20_3996 30036078 907621..908304 C 1 NC_031671.1 Integral membrane protein of the early Golgi apparatus and ER; involved in COP II vesicle transport; may also function to promote retention of proteins in the early Golgi compartment; GO_component: GO:0030134 - ER to Golgi transport vesicle [Evidence IDA] [PMID 16957051]; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA,IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 14562095]; GO_component: GO:0030173 - integral component of Golgi membrane [Evidence IDA] [PMID 16107716]; GO_component: GO:0030176 - integral component of endoplasmic reticulum membrane [Evidence IDA] [PMID 16957051]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0097020 - COPII adaptor activity [Evidence IMP,IPI] [PMID 20236934]; GO_process: GO:0006888 - ER to Golgi vesicle-mediated transport [Evidence IDA,IMP] [PMID 16957051]; GO_process: GO:0031505 - fungal-type cell wall organization [Evidence IGI,IMP] [PMID 16107716]; GO_process: GO:0006486 - protein glycosylation [Evidence IMP] [PMID 16107716]; GO_process: GO:0045053 - protein retention in Golgi apparatus [Evidence IMP] [PMID 16107716]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Svp26p 908304 SVP26 30036078 SVP26 Sugiyamaella lignohabitans Svp26p XP_018733671.1 907621 D 796027 CDS AWJ20_3997 30036079 909451..910419 C 1 NC_031671.1 5-phospho-ribosyl-1(alpha)-pyrophosphate synthetase, synthesizes PRPP; which is required for nucleotide, histidine, and tryptophan biosynthesis; one of five related enzymes, which are active as heteromultimeric complexes; PRS2 has a paralog, PRS4, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000287 - magnesium ion binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0004749 - ribose phosphate diphosphokinase activity [Evidence IEA,IEA]; GO_function: GO:0004749 - ribose phosphate diphosphokinase activity [Evidence IGI] [PMID 15280369]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006015 - 5-phosphoribose 1-diphosphate biosynthetic process [Evidence IEA]; GO_process: GO:0006015 - 5-phosphoribose 1-diphosphate biosynthetic process [Evidence IMP] [PMID 10212224]; GO_process: GO:0006015 - 5-phosphoribose 1-diphosphate biosynthetic process [Evidence IGI] [PMID 15280369]; GO_process: GO:0044249 - cellular biosynthetic process [Evidence IEA]; GO_process: GO:0031505 - fungal-type cell wall organization [Evidence IPI] [PMID 15470112]; GO_process: GO:0009165 - nucleotide biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; GO_process: GO:0009156 - ribonucleoside monophosphate biosynthetic process [Evidence IEA]; ribose phosphate diphosphokinase subunit PRS2 910419 PRS2 30036079 PRS2 Sugiyamaella lignohabitans ribose phosphate diphosphokinase subunit PRS2 XP_018733672.1 909451 D 796027 CDS AWJ20_3998 30036080 complement(910743..912932) C 1 NC_031671.1 Protein involved in ER-to-Golgi transport; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 14562095]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 23613772]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0005215 - transporter activity [Evidence IEA]; GO_process: GO:0006888 - ER to Golgi vesicle-mediated transport [Evidence IGI] [PMID 1903839]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; Sly41p 912932 SLY41 30036080 SLY41 Sugiyamaella lignohabitans Sly41p XP_018733673.1 910743 R 796027 CDS AWJ20_3999 30036081 complement(914141..916000) C 1 NC_031671.1 Protein involved in negative regulation of iron regulon transcription; forms an iron independent complex with Fra2p, Grx3p, and Grx4p; cytosolic; mutant fails to repress transcription of iron regulon and is defective in spore formation; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 18281282]; GO_function: GO:0004177 - aminopeptidase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA,IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0008237 - metallopeptidase activity [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_process: GO:0034396 - negative regulation of transcription from RNA polymerase II promoter in response to iron [Evidence IGI,IMP] [PMID 18281282]; GO_process: GO:0006508 - proteolysis [Evidence IEA]; Fra1p 916000 FRA1 30036081 FRA1 Sugiyamaella lignohabitans Fra1p XP_018733674.1 914141 R 796027 CDS AWJ20_4000 30036085 complement(916502..917815) C 1 NC_031671.1 Lanosterol 14-alpha-demethylase; catalyzes the C-14 demethylation of lanosterol to form 4,4''-dimethyl cholesta-8,14,24-triene-3-beta-ol in the ergosterol biosynthesis pathway; member of the cytochrome P450 family; associated and coordinately regulated with the P450 reductase Ncp1p; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 11914276]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 15951236]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_function: GO:0020037 - heme binding [Evidence IEA]; GO_function: GO:0005506 - iron ion binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004497 - monooxygenase activity [Evidence IEA,IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [Evidence IEA]; GO_function: GO:0008398 - sterol 14-demethylase activity [Evidence IEA]; GO_function: GO:0008398 - sterol 14-demethylase activity [Evidence IDA] [PMID 9087488]; GO_process: GO:0070988 - demethylation [Evidence IEA]; GO_process: GO:0006696 - ergosterol biosynthetic process [Evidence IMP] [PMID 200835]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0006694 - steroid biosynthetic process [Evidence IEA]; GO_process: GO:0008202 - steroid metabolic process [Evidence IEA]; GO_process: GO:0016126 - sterol biosynthetic process [Evidence IEA]; sterol 14-demethylase 917815 ERG11 30036085 ERG11 Sugiyamaella lignohabitans sterol 14-demethylase XP_018733675.1 916502 R 796027 CDS AWJ20_4001 30036086 920607..923210 C 1 NC_031671.1 Karyopherin beta; responsible for import of the Toa1p-Toa2p complex into the nucleus; binds to nucleoporins Nup1p and Nup2p; may play a role in regulation of pleiotropic drug resistance; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 10684247]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0005635 - nuclear envelope [Evidence IEA]; GO_component: GO:0005643 - nuclear pore [Evidence IDA] [PMID 10684247]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_function: GO:0008565 - protein transporter activity [Evidence IMP,IPI] [PMID 10525531]; GO_process: GO:0006606 - protein import into nucleus [Evidence IDA,IMP] [PMID 10525531]; GO_process: GO:0008361 - regulation of cell size [Evidence IMP] [PMID 12089449]; GO_process: GO:0006810 - transport [Evidence IEA]; Kap122p 923210 KAP122 30036086 KAP122 Sugiyamaella lignohabitans Kap122p XP_018733676.1 920607 D 796027 CDS AWJ20_4002 30036087 complement(923609..924694) C 1 NC_031671.1 Protein necessary for stability of L-A dsRNA-containing particles; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0044419 - interspecies interaction between organisms [Evidence IMP] [PMID 3551911]; Mak32p 924694 MAK32 30036087 MAK32 Sugiyamaella lignohabitans Mak32p XP_018733677.1 923609 R 796027 CDS AWJ20_4003 30036088 complement(925146..927719) C 1 NC_031671.1 FG-nucleoporin NUP116 927719 NUP116 30036088 NUP116 Sugiyamaella lignohabitans FG-nucleoporin NUP116 XP_018733678.1 925146 R 796027 CDS AWJ20_4004 30036089 complement(927802..928641) C 1 NC_031671.1 FG-nucleoporin NUP116 928641 NUP116 30036089 NUP116 Sugiyamaella lignohabitans FG-nucleoporin NUP116 XP_018733679.1 927802 R 796027 CDS AWJ20_4005 30036090 929516..930553 C 1 NC_031671.1 5' to 3' exonuclease, 5' flap endonuclease; required for Okazaki fragment processing and maturation, for long-patch base-excision repair and large loop repair (LLR), ribonucleotide excision repair; member of the S. pombe RAD2/FEN1 family; relocalizes to the cytosol in response to hypoxia; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 22932476]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 19699691]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005654 - nucleoplasm [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 19699691]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22932476]; GO_function: GO:0008409 - 5'-3' exonuclease activity [Evidence IEA]; GO_function: GO:0008409 - 5'-3' exonuclease activity [Evidence IDA] [PMID 9166764]; GO_function: GO:0017108 - 5'-flap endonuclease activity [Evidence IEA]; GO_function: GO:0017108 - 5'-flap endonuclease activity [Evidence IDA] [PMID 11825897]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0004519 - endonuclease activity [Evidence IEA]; GO_function: GO:0004527 - exonuclease activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016788 - hydrolase activity, acting on ester bonds [Evidence IEA]; GO_function: GO:0000287 - magnesium ion binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004518 - nuclease activity [Evidence IEA,IEA]; GO_process: GO:0000737 - DNA catabolic process, endonucleolytic [Evidence IEA]; GO_process: GO:0006281 - DNA repair [Evidence IEA,IEA]; GO_process: GO:0006260 - DNA replication [Evidence IEA]; GO_process: GO:0043137 - DNA replication, removal of RNA primer [Evidence IEA]; GO_process: GO:0043137 - DNA replication, removal of RNA primer [Evidence IDA] [PMID 16837458]; GO_process: GO:0006284 - base-excision repair [Evidence IEA]; GO_process: GO:0006286 - base-excision repair, base-free sugar-phosphate removal [Evidence IGI,IMP] [PMID 9927726]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0006303 - double-strand break repair via nonhomologous end joining [Evidence IDA] [PMID 15342630]; GO_process: GO:0000734 - gene conversion at mating-type locus, DNA repair synthesis [Evidence IMP] [PMID 10025407]; GO_process: GO:0035753 - maintenance of DNA trinucleotide repeats [Evidence IGI,IMP] [PMID 16079237]; GO_process: GO:0090305 - nucleic acid phosphodiester bond hydrolysis [Evidence IEA,IEA,IEA]; GO_process: GO:0001302 - replicative cell aging [Evidence IMP] [PMID 12024027]; multifunctional nuclease RAD27 930553 RAD27 30036090 RAD27 Sugiyamaella lignohabitans multifunctional nuclease RAD27 XP_018733680.1 929516 D 796027 CDS AWJ20_4006 30036091 931642..932619 C 1 NC_031671.1 Major apurinic/apyrimidinic endonuclease; 3'-repair diesterase; involved in repair of DNA damage by oxidation and alkylating agents; also functions as a 3'-5' exonuclease to repair 7,8-dihydro-8-oxodeoxyguanosine; genetically interacts with NTG1 to maintain mitochondrial genome integrity; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 11238901]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 7690756]; GO_function: GO:0017005 - 3'-tyrosyl-DNA phosphodiesterase activity [Evidence IDA] [PMID 12397185]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0003906 - DNA-(apurinic or apyrimidinic site) lyase activity [Evidence IEA]; GO_function: GO:0003906 - DNA-(apurinic or apyrimidinic site) lyase activity [Evidence IDA] [PMID 12767225]; GO_function: GO:0003906 - DNA-(apurinic or apyrimidinic site) lyase activity [Evidence IMP,ISS] [PMID 1693433]; GO_function: GO:0008311 - double-stranded DNA 3'-5' exodeoxyribonuclease activity [Evidence IDA] [PMID 16024777]; GO_function: GO:0004519 - endonuclease activity [Evidence IEA]; GO_function: GO:0016829 - lyase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0008081 - phosphoric diester hydrolase activity [Evidence IDA] [PMID 3056935]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0000737 - DNA catabolic process, endonucleolytic [Evidence IEA]; GO_process: GO:0006281 - DNA repair [Evidence IEA,IEA]; GO_process: GO:0006284 - base-excision repair [Evidence IDA] [PMID 9295360]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0090305 - nucleic acid phosphodiester bond hydrolysis [Evidence IEA]; DNA-(apurinic or apyrimidinic site) lyase APN1 932619 APN1 30036091 APN1 Sugiyamaella lignohabitans DNA-(apurinic or apyrimidinic site) lyase APN1 XP_018733681.1 931642 D 796027 CDS AWJ20_4007 30036092 933560..935002 C 1 NC_031671.1 arrestin (or S-antigen), N-terminal domain protein 935002 30036092 AWJ20_4007 Sugiyamaella lignohabitans arrestin (or S-antigen), N-terminal domain protein XP_018733682.1 933560 D 796027 CDS AWJ20_4008 30036093 937968..939551 C 1 NC_031671.1 uncharacterized protein 939551 30036093 AWJ20_4008 Sugiyamaella lignohabitans uncharacterized protein XP_018733683.1 937968 D 796027 CDS AWJ20_4009 30036094 940062..940955 C 1 NC_031671.1 NADPH-dependent aldo-keto reductase; reduces multiple substrates including 2-methylbutyraldehyde and D,L-glyceraldehyde, expression is induced by osmotic and oxidative stress; functionally redundant with other aldo-keto reductases; protein abundance increases in response to DNA replication stress; YPR1 has a paralog, GCY1, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0004032 - alditol:NADP+ 1-oxidoreductase activity [Evidence IDA,ISS] [PMID 11306085]; GO_function: GO:0004090 - carbonyl reductase (NADPH) activity [Evidence IDA] [PMID 19016485]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_process: GO:0042843 - D-xylose catabolic process [Evidence IDA] [PMID 12271459]; GO_process: GO:0019568 - arabinose catabolic process [Evidence IDA,IMP] [PMID 12271459]; GO_process: GO:0034599 - cellular response to oxidative stress [Evidence IGI] [PMID 17919749]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; trifunctional aldehyde reductase/carbonyl reductase (NADPH)/glucose 1-dehydrogenase (NADP(+)) YPR1 940955 YPR1 30036094 YPR1 Sugiyamaella lignohabitans trifunctional aldehyde reductase/carbonyl reductase (NADPH)/glucose 1-dehydrogenase (NADP(+)) YPR1 XP_018733684.1 940062 D 796027 CDS AWJ20_4010 30036096 941544..943850 C 1 NC_031671.1 uncharacterized protein 943850 30036096 AWJ20_4010 Sugiyamaella lignohabitans uncharacterized protein XP_018733685.1 941544 D 796027 CDS AWJ20_4011 30036097 complement(946717..948507) C 1 NC_031671.1 replication factor A subunit protein RFA1 948507 RFA1 30036097 RFA1 Sugiyamaella lignohabitans replication factor A subunit protein RFA1 XP_018733686.1 946717 R 796027 CDS AWJ20_4012 30036098 952156..954954 C 1 NC_031671.1 uncharacterized protein 954954 30036098 AWJ20_4012 Sugiyamaella lignohabitans uncharacterized protein XP_018733687.1 952156 D 796027 CDS AWJ20_4013 30036099 970817..972613 C 1 NC_031671.1 Subunit of U3-containing Small Subunit (SSU) processome complex; involved in production of 18S rRNA and assembly of small ribosomal subunit; disrupts silencing when overproduced; mutant has increased aneuploidy tolerance; essential gene; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 12068309]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9611201]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0032040 - small-subunit processome [Evidence IDA] [PMID 12068309]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0000480 - endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 15489292]; GO_process: GO:0000447 - endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 15489292]; GO_process: GO:0000472 - endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 15489292]; GO_process: GO:0000462 - maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 12068309]; GO_process: GO:0000462 - maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 12837249]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; Sas10p 972613 SAS10 30036099 SAS10 Sugiyamaella lignohabitans Sas10p XP_018733688.1 970817 D 796027 CDS AWJ20_4014 30036100 973080..973805 C 1 NC_031671.1 uncharacterized protein 973805 30036100 AWJ20_4014 Sugiyamaella lignohabitans uncharacterized protein XP_018733689.1 973080 D 796027 CDS AWJ20_4015 30036101 join(976058..976133,976176..976879) C 1 NC_031671.1 protein AIM2 976879 AIM2 30036101 AIM2 Sugiyamaella lignohabitans protein AIM2 XP_018733690.1 976058 D 796027 CDS AWJ20_4016 30036102 977848..979965 C 1 NC_031671.1 RNA-binding protein involved in meiosis Mei2 979965 mei2 30036102 mei2 Sugiyamaella lignohabitans RNA-binding protein involved in meiosis Mei2 XP_018733691.1 977848 D 796027 CDS AWJ20_4017 30036103 981659..983995 C 1 NC_031671.1 Protein arginine N-methyltransferase; exhibits septin and Hsl1p-dependent bud neck localization and periodic Hsl1p-dependent phosphorylation; required along with Hsl1p for bud neck recruitment, phosphorylation, and degradation of Swe1p; relocalizes away from bud neck upon DNA replication stress; GO_component: GO:0005935 - cellular bud neck [Evidence IEA]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 10490648]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 10805747]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 22842922]; GO_component: GO:0032174 - cellular bud neck septin collar [Evidence IDA] [PMID 23389636]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_function: GO:0008469 - histone-arginine N-methyltransferase activity [Evidence IEA]; GO_function: GO:0008168 - methyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0035241 - protein-arginine omega-N monomethyltransferase activity [Evidence IDA] [PMID 16426232]; GO_function: GO:0035241 - protein-arginine omega-N monomethyltransferase activity [Evidence IDA] [PMID 18515076]; GO_function: GO:0035243 - protein-arginine omega-N symmetric methyltransferase activity [Evidence IDA] [PMID 18515076]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0000086 - G2/M transition of mitotic cell cycle [Evidence IGI,IMP] [PMID 10490630]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0044257 - cellular protein catabolic process [Evidence IMP] [PMID 23042131]; GO_process: GO:0034969 - histone arginine methylation [Evidence IEA]; GO_process: GO:0032259 - methylation [Evidence IEA]; GO_process: GO:0007067 - mitotic nuclear division [Evidence IEA]; GO_process: GO:0006479 - protein methylation [Evidence IEA]; GO_process: GO:0051726 - regulation of cell cycle [Evidence IMP] [PMID 8647431]; Hsl7p 983995 HSL7 30036103 HSL7 Sugiyamaella lignohabitans Hsl7p XP_018733692.1 981659 D 796027 CDS AWJ20_4018 30036104 complement(990502..993891) C 1 NC_031671.1 RNA binding protein involved in synthesis of both 18S and 5.8S rRNAs; component of both the ribosomal small subunit (SSU) processosome and the 90S preribosome; acts as part of a Mak21p-Noc2p-Rrp5p module that associates with nascent pre-rRNA during transcription and has a role in bigenesis of the large ribosomal subunit; has binding preference for single stranded tracts of U's; relocalizes from nucleolus to nucleus upon DNA replication stress; GO_component: GO:0030686 - 90S preribosome [Evidence IDA] [PMID 12150911]; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 22842922]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 8896463]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0032040 - small-subunit processome [Evidence IDA] [PMID 12068309]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_function: GO:0008266 - poly(U) RNA binding [Evidence IDA] [PMID 16428605]; GO_process: GO:0006396 - RNA processing [Evidence IEA]; GO_process: GO:0000480 - endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 8896463]; GO_process: GO:0000447 - endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 8896463]; GO_process: GO:0000464 - endonucleolytic cleavage in ITS1 upstream of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 8896463]; GO_process: GO:0000472 - endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 8896463]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; Rrp5p 993891 RRP5 30036104 RRP5 Sugiyamaella lignohabitans Rrp5p XP_018733693.1 990502 R 796027 CDS AWJ20_4019 30036105 complement(join(994013..995530,995642..995830)) C 1 NC_031671.1 RNA binding protein involved in synthesis of both 18S and 5.8S rRNAs; component of both the ribosomal small subunit (SSU) processosome and the 90S preribosome; acts as part of a Mak21p-Noc2p-Rrp5p module that associates with nascent pre-rRNA during transcription and has a role in bigenesis of the large ribosomal subunit; has binding preference for single stranded tracts of U's; relocalizes from nucleolus to nucleus upon DNA replication stress; GO_component: GO:0030686 - 90S preribosome [Evidence IDA] [PMID 12150911]; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 22842922]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 8896463]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0032040 - small-subunit processome [Evidence IDA] [PMID 12068309]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_function: GO:0008266 - poly(U) RNA binding [Evidence IDA] [PMID 16428605]; GO_process: GO:0006396 - RNA processing [Evidence IEA]; GO_process: GO:0000480 - endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 8896463]; GO_process: GO:0000447 - endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 8896463]; GO_process: GO:0000464 - endonucleolytic cleavage in ITS1 upstream of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 8896463]; GO_process: GO:0000472 - endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 8896463]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; Rrp5p 995830 RRP5 30036105 RRP5 Sugiyamaella lignohabitans Rrp5p XP_018733694.1 994013 R 796027 CDS AWJ20_4020 30036107 996712..997326 C 1 NC_031671.1 Methionine-S-sulfoxide reductase; involved in the response to oxidative stress; protects iron-sulfur clusters from oxidative inactivation along with MXR2; involved in the regulation of lifespan; reduced activity of human homolog implicated in Alzheimer disease; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 20799725]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0016671 - oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor [Evidence IEA]; GO_function: GO:0008113 - peptide-methionine (S)-S-oxide reductase activity [Evidence IEA,IEA]; GO_function: GO:0008113 - peptide-methionine (S)-S-oxide reductase activity [Evidence IDA,IMP] [PMID 15141092]; GO_function: GO:0008113 - peptide-methionine (S)-S-oxide reductase activity [Evidence IDA,IMP,ISS] [PMID 9275166]; GO_process: GO:0034599 - cellular response to oxidative stress [Evidence IGI,IMP] [PMID 11929995]; GO_process: GO:0034599 - cellular response to oxidative stress [Evidence IMP] [PMID 9275166]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0030091 - protein repair [Evidence IEA]; GO_process: GO:0006979 - response to oxidative stress [Evidence IEA]; Mxr1p 997326 MXR1 30036107 MXR1 Sugiyamaella lignohabitans Mxr1p XP_018733695.1 996712 D 796027 CDS AWJ20_4021 30036108 999749..1000363 C 1 NC_031671.1 uncharacterized protein 1000363 30036108 AWJ20_4021 Sugiyamaella lignohabitans uncharacterized protein XP_018733696.1 999749 D 796027 CDS AWJ20_4022 30036109 complement(1001193..1002584) C 1 NC_031671.1 uncharacterized protein 1002584 30036109 AWJ20_4022 Sugiyamaella lignohabitans uncharacterized protein XP_018733697.1 1001193 R 796027 CDS AWJ20_4023 30036110 1004474..1007383 C 1 NC_031671.1 uncharacterized protein 1007383 30036110 AWJ20_4023 Sugiyamaella lignohabitans uncharacterized protein XP_018733698.1 1004474 D 796027 CDS AWJ20_4024 30036111 1009856..1011643 C 1 NC_031671.1 Hexokinase isoenzyme 2; catalyzes phosphorylation of glucose in the cytosol; predominant hexokinase during growth on glucose; functions in the nucleus to repress expression of HXK1 and GLK1 and to induce expression of its own gene; antiapoptotic; phosphorylation/dephosphorylation at serine-14 by protein kinase Snf1p and protein phosphatase Glc7p-Reg1p regulates nucleocytoplasmic shuttling of Hxk2p; HXK2 has a paralog, HXK1, that arose from the whole genome duplication; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 11311123]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 9563516]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16962558]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11311123]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9563516]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0004396 - hexokinase activity [Evidence IEA,IEA]; GO_function: GO:0004396 - hexokinase activity [Evidence IDA] [PMID 12611889]; GO_function: GO:0004396 - hexokinase activity [Evidence IDA] [PMID 332086]; GO_function: GO:0004396 - hexokinase activity [Evidence IMP] [PMID 6341351]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016773 - phosphotransferase activity, alcohol group as acceptor [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0005975 - carbohydrate metabolic process [Evidence IEA]; GO_process: GO:0046835 - carbohydrate phosphorylation [Evidence IEA,IEA]; GO_process: GO:0032445 - fructose import [Evidence IGI] [PMID 6300872]; GO_process: GO:0006000 - fructose metabolic process [Evidence IMP] [PMID 6300872]; GO_process: GO:0046323 - glucose import [Evidence IGI] [PMID 6300872]; GO_process: GO:0006006 - glucose metabolic process [Evidence IMP] [PMID 6300872]; GO_process: GO:0006096 - glycolytic process [Evidence IEA,IEA]; GO_process: GO:0006096 - glycolytic process [Evidence IDA] [PMID 332086]; GO_process: GO:0006096 - glycolytic process [Evidence IDA,IMP] [PMID 8917466]; GO_process: GO:0019318 - hexose metabolic process [Evidence IEA]; GO_process: GO:0006013 - mannose metabolic process [Evidence IDA] [PMID 332086]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; GO_process: GO:0008361 - regulation of cell size [Evidence IMP] [PMID 12089449]; GO_process: GO:0046015 - regulation of transcription by glucose [Evidence IDA] [PMID 11311123]; GO_process: GO:0001302 - replicative cell aging [Evidence IMP] [PMID 15722108]; hexokinase 2 1011643 HXK2 30036111 HXK2 Sugiyamaella lignohabitans hexokinase 2 XP_018733699.1 1009856 D 796027 CDS AWJ20_4025 30036112 complement(1013454..1015280) C 1 NC_031671.1 Phosphatidylinositol-4-phosphate 5-kinase; involved in actin cytoskeleton organization and cell morphogenesis; multicopy suppressor of stt4 mutation; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9624177]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 9624177]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IEA]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IDA] [PMID 9624177]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IDA] [PMID 9624178]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016307 - phosphatidylinositol phosphate kinase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0031321 - ascospore-type prospore assembly [Evidence IGI] [PMID 19502581]; GO_process: GO:0046488 - phosphatidylinositol metabolic process [Evidence IEA]; GO_process: GO:0046854 - phosphatidylinositol phosphorylation [Evidence IDA] [PMID 9624177]; GO_process: GO:0046854 - phosphatidylinositol phosphorylation [Evidence IDA] [PMID 9624178]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; 1-phosphatidylinositol-4-phosphate 5-kinase 1015280 MSS4 30036112 MSS4 Sugiyamaella lignohabitans 1-phosphatidylinositol-4-phosphate 5-kinase XP_018733700.1 1013454 R 796027 CDS AWJ20_4026 30036113 complement(1030228..1031409) C 1 NC_031671.1 homogentisate 1,2-dioxygenase 1031409 30036113 AWJ20_4026 Sugiyamaella lignohabitans homogentisate 1,2-dioxygenase XP_018733701.1 1030228 R 796027 CDS AWJ20_4027 30036114 1032590..1033435 C 1 NC_031671.1 Mediator of RNA polymerase II transcription subunit 18 1033435 30036114 AWJ20_4027 Sugiyamaella lignohabitans Mediator of RNA polymerase II transcription subunit 18 XP_018733702.1 1032590 D 796027 CDS AWJ20_4028 30036115 complement(1033650..1035482) C 1 NC_031671.1 Component of several different pre-ribosomal particles; forms a complex with Ytm1p and Erb1p that is required for maturation of the large ribosomal subunit; required for exit from G0 and the initiation of cell proliferation; GO_component: GO:0070545 - PeBoW complex [Evidence IDA,IPI] [PMID 16287855]; GO_component: GO:0005730 - nucleolus [Evidence IEA,IEA,IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 10684247]; GO_component: GO:0005654 - nucleoplasm [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 10684247]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IEA]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 11583614]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 23212245]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_function: GO:0043021 - ribonucleoprotein complex binding [Evidence IEA]; GO_process: GO:0044786 - cell cycle DNA replication [Evidence IMP] [PMID 12110181]; GO_process: GO:0000466 - maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IEA]; GO_process: GO:0000463 - maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IEA]; GO_process: GO:0000462 - maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 12837249]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0042273 - ribosomal large subunit biogenesis [Evidence IEA]; GO_process: GO:0042273 - ribosomal large subunit biogenesis [Evidence IDA] [PMID 11911362]; GO_process: GO:0042273 - ribosomal large subunit biogenesis [Evidence IDA] [PMID 16888624]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA,IEA]; Nop7p 1035482 NOP7 30036115 NOP7 Sugiyamaella lignohabitans Nop7p XP_018733703.1 1033650 R 796027 CDS AWJ20_4029 30036116 complement(1038269..1039882) C 1 NC_031671.1 glucose-inactivated glycerol proton symporter STL1 1039882 STL1 30036116 STL1 Sugiyamaella lignohabitans glucose-inactivated glycerol proton symporter STL1 XP_018733704.1 1038269 R 796027 CDS AWJ20_4030 30036118 complement(1042292..1043908) C 1 NC_031671.1 Intracellular sporulation-specific glucoamylase; involved in glycogen degradation; induced during starvation of a/a diploids late in sporulation, but dispensable for sporulation; GO_component: GO:0000324 - fungal-type vacuole [Evidence IDA] [PMID 2493265]; GO_component: GO:0005628 - prospore membrane [Evidence IDA] [PMID 24390141]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0004339 - glucan 1,4-alpha-glucosidase activity [Evidence IEA,IEA]; GO_function: GO:0004339 - glucan 1,4-alpha-glucosidase activity [Evidence IDA] [PMID 2493265]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016798 - hydrolase activity, acting on glycosyl bonds [Evidence IEA]; GO_function: GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]; GO_process: GO:0030437 - ascospore formation [Evidence IEP] [PMID 350852]; GO_process: GO:0005975 - carbohydrate metabolic process [Evidence IEA]; GO_process: GO:0005980 - glycogen catabolic process [Evidence IMP] [PMID 11486014]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0000272 - polysaccharide catabolic process [Evidence IEA]; GO_process: GO:0005976 - polysaccharide metabolic process [Evidence IEA]; GO_process: GO:0030435 - sporulation resulting in formation of a cellular spore [Evidence IEA]; glucan 1,4-alpha-glucosidase 1043908 SGA1 30036118 SGA1 Sugiyamaella lignohabitans glucan 1,4-alpha-glucosidase XP_018733705.1 1042292 R 796027 CDS AWJ20_4031 30036119 1046236..1049613 C 1 NC_031671.1 serine/threonine protein kinase ARK1 1049613 ARK1 30036119 ARK1 Sugiyamaella lignohabitans serine/threonine protein kinase ARK1 XP_018733706.1 1046236 D 796027 CDS AWJ20_4032 30036120 1055708..1056874 C 1 NC_031671.1 Mitochondrial serine protease; required for the processing of various mitochondrial proteins and maintenance of mitochondrial DNA and morphology; belongs to the rhomboid-GlpG superfamily of intramembrane peptidases; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IDA] [PMID 12774122]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_function: GO:0004252 - serine-type endopeptidase activity [Evidence IEA]; GO_function: GO:0004252 - serine-type endopeptidase activity [Evidence IMP] [PMID 12774122]; GO_function: GO:0004252 - serine-type endopeptidase activity [Evidence IMP] [PMID 20558178]; GO_function: GO:0008236 - serine-type peptidase activity [Evidence IEA]; GO_process: GO:0006508 - proteolysis [Evidence IEA,IEA]; GO_process: GO:0010821 - regulation of mitochondrion organization [Evidence IMP] [PMID 11907266]; GO_process: GO:0010821 - regulation of mitochondrion organization [Evidence IMP] [PMID 12707284]; GO_process: GO:0006465 - signal peptide processing [Evidence IMP] [PMID 12417197]; Pcp1p 1056874 PCP1 30036120 PCP1 Sugiyamaella lignohabitans Pcp1p XP_018733707.1 1055708 D 796027 CDS AWJ20_4033 30036121 complement(join(1069797..1071562,1071847..1072009)) C 1 NC_031671.1 Phosphatidylinositol-4-phosphate 5-kinase; involved in actin cytoskeleton organization and cell morphogenesis; multicopy suppressor of stt4 mutation; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9624177]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 9624177]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IEA]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IDA] [PMID 9624177]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IDA] [PMID 9624178]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016307 - phosphatidylinositol phosphate kinase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0031321 - ascospore-type prospore assembly [Evidence IGI] [PMID 19502581]; GO_process: GO:0046488 - phosphatidylinositol metabolic process [Evidence IEA]; GO_process: GO:0046854 - phosphatidylinositol phosphorylation [Evidence IDA] [PMID 9624177]; GO_process: GO:0046854 - phosphatidylinositol phosphorylation [Evidence IDA] [PMID 9624178]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; 1-phosphatidylinositol-4-phosphate 5-kinase 1072009 MSS4 30036121 MSS4 Sugiyamaella lignohabitans 1-phosphatidylinositol-4-phosphate 5-kinase XP_018733708.1 1069797 R 796027 CDS AWJ20_4034 30036122 complement(1073340..1074926) C 1 NC_031671.1 Phosphatidylinositol-4-phosphate 5-kinase; involved in actin cytoskeleton organization and cell morphogenesis; multicopy suppressor of stt4 mutation; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9624177]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 9624177]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IEA]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IDA] [PMID 9624177]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IDA] [PMID 9624178]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016307 - phosphatidylinositol phosphate kinase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0031321 - ascospore-type prospore assembly [Evidence IGI] [PMID 19502581]; GO_process: GO:0046488 - phosphatidylinositol metabolic process [Evidence IEA]; GO_process: GO:0046854 - phosphatidylinositol phosphorylation [Evidence IDA] [PMID 9624177]; GO_process: GO:0046854 - phosphatidylinositol phosphorylation [Evidence IDA] [PMID 9624178]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; 1-phosphatidylinositol-4-phosphate 5-kinase 1074926 MSS4 30036122 MSS4 Sugiyamaella lignohabitans 1-phosphatidylinositol-4-phosphate 5-kinase XP_018733709.1 1073340 R 796027 CDS AWJ20_4035 30036123 complement(1078022..1078540) C 1 NC_031671.1 Ubiquitin-conjugating enzyme involved in ERAD; located at the cytosolic side of the ER membrane; tail region contains a transmembrane segment at the C-terminus; substrate of the ubiquitin-proteasome pathway; ER-associated protein degradation is also known as ERAD; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IDA] [PMID 8396728]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0016881 - acid-amino acid ligase activity [Evidence IEA]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence IEA]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence IMP] [PMID 18191224]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence IDA,IMP] [PMID 8396728]; GO_process: GO:0030433 - ER-associated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 18191224]; GO_process: GO:0030433 - ER-associated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 8393731]; GO_process: GO:0030433 - ER-associated ubiquitin-dependent protein catabolic process [Evidence IGI] [PMID 8396728]; GO_process: GO:0030433 - ER-associated ubiquitin-dependent protein catabolic process [Evidence IGI,IMP] [PMID 8641272]; GO_process: GO:0030433 - ER-associated ubiquitin-dependent protein catabolic process [Evidence IGI,IMP] [PMID 8781238]; GO_process: GO:0006513 - protein monoubiquitination [Evidence IDA,IMP] [PMID 8396728]; GO_process: GO:0000209 - protein polyubiquitination [Evidence IMP] [PMID 19345192]; GO_process: GO:0016567 - protein ubiquitination [Evidence IEA]; E2 ubiquitin-conjugating protein UBC6 1078540 UBC6 30036123 UBC6 Sugiyamaella lignohabitans E2 ubiquitin-conjugating protein UBC6 XP_018733710.1 1078022 R 796027 CDS AWJ20_4037 30036125 complement(1082163..1083047) C 1 NC_031671.1 U4/U6.U5 small nuclear ribonucleoprotein 1083047 30036125 AWJ20_4037 Sugiyamaella lignohabitans U4/U6.U5 small nuclear ribonucleoprotein XP_018733711.1 1082163 R 796027 CDS AWJ20_4038 30036126 1083338..1084726 C 1 NC_031671.1 uncharacterized protein 1084726 30036126 AWJ20_4038 Sugiyamaella lignohabitans uncharacterized protein XP_018733712.1 1083338 D 796027 CDS AWJ20_4039 30036127 complement(join(1084955..1086664,1086873..1086989)) C 1 NC_031671.1 UBX (ubiquitin regulatory X) domain-containing protein; interacts with Cdc48p; UBX7 has a paralog, UBX6, that arose from the whole genome duplication; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA,IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 14562095]; GO_component: GO:0005635 - nuclear envelope [Evidence IDA] [PMID 14755638]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0030435 - sporulation resulting in formation of a cellular spore [Evidence IMP] [PMID 14755638]; GO_process: GO:0006511 - ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 14755638]; Ubx7p 1086989 UBX7 30036127 UBX7 Sugiyamaella lignohabitans Ubx7p XP_018733713.1 1084955 R 796027 CDS AWJ20_4040 30036129 complement(1087593..1089275) C 1 NC_031671.1 Major of three pyruvate decarboxylase isozymes; key enzyme in alcoholic fermentation; decarboxylates pyruvate to acetaldehyde; involved in amino acid catabolism; subject to glucose-, ethanol-, and autoregulation; activated by phosphorylation in response to glucose levels; N-terminally propionylated in vivo; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 2665820]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 16850348]; GO_function: GO:0047433 - branched-chain-2-oxoacid decarboxylase activity [Evidence IMP] [PMID 9546164]; GO_function: GO:0016831 - carboxy-lyase activity [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA,IEA]; GO_function: GO:0016829 - lyase activity [Evidence IEA]; GO_function: GO:0000287 - magnesium ion binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004737 - pyruvate decarboxylase activity [Evidence IEA]; GO_function: GO:0004737 - pyruvate decarboxylase activity [Evidence IDA] [PMID 23423327]; GO_function: GO:0004737 - pyruvate decarboxylase activity [Evidence IDA] [PMID 2404950]; GO_function: GO:0030976 - thiamine pyrophosphate binding [Evidence IEA]; GO_process: GO:0006559 - L-phenylalanine catabolic process [Evidence IEA]; GO_process: GO:0006559 - L-phenylalanine catabolic process [Evidence IGI] [PMID 12499363]; GO_process: GO:0000955 - amino acid catabolic process via Ehrlich pathway [Evidence IEA]; GO_process: GO:0000949 - aromatic amino acid family catabolic process to alcohol via Ehrlich pathway [Evidence IGI] [PMID 12499363]; GO_process: GO:0009083 - branched-chain amino acid catabolic process [Evidence IEA]; GO_process: GO:0019655 - glucose catabolic process to ethanol [Evidence IDA] [PMID 2404950]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0006090 - pyruvate metabolic process [Evidence IDA] [PMID 2404950]; GO_process: GO:0006569 - tryptophan catabolic process [Evidence IEA]; GO_process: GO:0006569 - tryptophan catabolic process [Evidence IGI] [PMID 12499363]; indolepyruvate decarboxylase 1 1089275 PDC1 30036129 PDC1 Sugiyamaella lignohabitans indolepyruvate decarboxylase 1 XP_018733714.1 1087593 R 796027 CDS AWJ20_4041 30036130 complement(1092052..1093860) C 1 NC_031671.1 Phosphatidylinositol-4-phosphate 5-kinase; involved in actin cytoskeleton organization and cell morphogenesis; multicopy suppressor of stt4 mutation; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9624177]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 9624177]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IEA]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IDA] [PMID 9624177]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IDA] [PMID 9624178]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016307 - phosphatidylinositol phosphate kinase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0031321 - ascospore-type prospore assembly [Evidence IGI] [PMID 19502581]; GO_process: GO:0046488 - phosphatidylinositol metabolic process [Evidence IEA]; GO_process: GO:0046854 - phosphatidylinositol phosphorylation [Evidence IDA] [PMID 9624177]; GO_process: GO:0046854 - phosphatidylinositol phosphorylation [Evidence IDA] [PMID 9624178]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; 1-phosphatidylinositol-4-phosphate 5-kinase 1093860 MSS4 30036130 MSS4 Sugiyamaella lignohabitans 1-phosphatidylinositol-4-phosphate 5-kinase XP_018733715.1 1092052 R 796027 CDS AWJ20_4042 30036131 complement(1096481..1096882) C 1 NC_031671.1 Putative phosphomutase; contains a region homologous to the active site of phosphomutases; overexpression suppresses the histidine auxotrophy of an ade3 ade16 ade17 triple mutant and the temperature sensitivity of a tps2 mutant; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0016853 - isomerase activity [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; Pmu1p 1096882 PMU1 30036131 PMU1 Sugiyamaella lignohabitans Pmu1p XP_018733716.1 1096481 R 796027 CDS AWJ20_4043 30036132 1098756..1100837 C 1 NC_031671.1 Polo-like kinase; controls targeting and activation of Rho1p at cell division site via Rholp guanine nucleotide exchange factors; regulates Spc72p; also functions in adaptation to DNA damage during meiosis; has similarity to Xenopus Plx1 and S. pombe Plo1p; possible Cdc28p substrate; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 10594031]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9819423]; GO_component: GO:0000922 - spindle pole [Evidence IDA] [PMID 10594031]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0008047 - enzyme activator activity [Evidence IDA] [PMID 16763112]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0004672 - protein kinase activity [Evidence IEA]; GO_function: GO:0004672 - protein kinase activity [Evidence IDA] [PMID 12637549]; GO_function: GO:0004672 - protein kinase activity [Evidence IDA] [PMID 16319894]; GO_function: GO:0004672 - protein kinase activity [Evidence IDA,IMP] [PMID 17122856]; GO_function: GO:0004672 - protein kinase activity [Evidence IDA,IMP] [PMID 8321244]; GO_function: GO:0004674 - protein serine/threonine kinase activity [Evidence IEA,IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016772 - transferase activity, transferring phosphorus-containing groups [Evidence IEA]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0007067 - mitotic nuclear division [Evidence IEA]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; GO_process: GO:0010696 - positive regulation of spindle pole body separation [Evidence IGI,IMP] [PMID 18500339]; GO_process: GO:0008104 - protein localization [Evidence IMP] [PMID 16763112]; GO_process: GO:0006468 - protein phosphorylation [Evidence IEA]; GO_process: GO:0006468 - protein phosphorylation [Evidence IDA] [PMID 16319894]; GO_process: GO:0006468 - protein phosphorylation [Evidence IDA,IMP] [PMID 17122856]; GO_process: GO:0006468 - protein phosphorylation [Evidence IDA,IMP] [PMID 8321244]; GO_process: GO:0000712 - resolution of meiotic recombination intermediates [Evidence IMP] [PMID 12717442]; GO_process: GO:0090306 - spindle assembly involved in meiosis [Evidence IMP] [PMID 20237423]; GO_process: GO:0070194 - synaptonemal complex disassembly [Evidence IGI] [PMID 18832066]; polo kinase CDC5 1100837 CDC5 30036132 CDC5 Sugiyamaella lignohabitans polo kinase CDC5 XP_018733717.1 1098756 D 796027 CDS AWJ20_4044 30036133 1104184..1104855 C 1 NC_031671.1 transcriptional regulator SIN3 1104855 SIN3 30036133 SIN3 Sugiyamaella lignohabitans transcriptional regulator SIN3 XP_018733718.1 1104184 D 796027 CDS AWJ20_4045 30036134 1105161..1109414 C 1 NC_031671.1 transcriptional regulator SIN3 1109414 SIN3 30036134 SIN3 Sugiyamaella lignohabitans transcriptional regulator SIN3 XP_018733719.1 1105161 D 796027 CDS AWJ20_4046 30036135 complement(1112750..1113700) C 1 NC_031671.1 Palmitoyltransferase with autoacylation activity; required for palmitoylation of amino acid permeases containing a C-terminal Phe-Trp-Cys site; required for modification of Chs3p; member of the DHHC family of putative palmitoyltransferases; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 16647879]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016409 - palmitoyltransferase activity [Evidence IMP] [PMID 16818716]; GO_function: GO:0019706 - protein-cysteine S-palmitoyltransferase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016746 - transferase activity, transferring acyl groups [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0018345 - protein palmitoylation [Evidence IMP] [PMID 16751107]; GO_process: GO:0018345 - protein palmitoylation [Evidence IMP] [PMID 16818716]; Pfa4p 1113700 PFA4 30036135 PFA4 Sugiyamaella lignohabitans Pfa4p XP_018733720.1 1112750 R 796027 CDS AWJ20_4047 30036136 1114610..1116007 C 1 NC_031671.1 Argininosuccinate lyase; catalyzes the final step in the arginine biosynthesis pathway; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 205532]; GO_function: GO:0004056 - argininosuccinate lyase activity [Evidence IEA,IEA]; GO_function: GO:0004056 - argininosuccinate lyase activity [Evidence IDA] [PMID 4578972]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016829 - lyase activity [Evidence IEA]; GO_process: GO:0006526 - arginine biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0042450 - arginine biosynthetic process via ornithine [Evidence IEA]; GO_process: GO:0042450 - arginine biosynthetic process via ornithine [Evidence IDA] [PMID 4578972]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; argininosuccinate lyase ARG4 1116007 ARG4 30036136 ARG4 Sugiyamaella lignohabitans argininosuccinate lyase ARG4 XP_018733721.1 1114610 D 796027 CDS AWJ20_4048 30036137 1117079..1118902 C 1 NC_031671.1 Phosphatidylinositol-4-phosphate 5-kinase; involved in actin cytoskeleton organization and cell morphogenesis; multicopy suppressor of stt4 mutation; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9624177]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 9624177]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IEA]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IDA] [PMID 9624177]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IDA] [PMID 9624178]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016307 - phosphatidylinositol phosphate kinase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0031321 - ascospore-type prospore assembly [Evidence IGI] [PMID 19502581]; GO_process: GO:0046488 - phosphatidylinositol metabolic process [Evidence IEA]; GO_process: GO:0046854 - phosphatidylinositol phosphorylation [Evidence IDA] [PMID 9624177]; GO_process: GO:0046854 - phosphatidylinositol phosphorylation [Evidence IDA] [PMID 9624178]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; 1-phosphatidylinositol-4-phosphate 5-kinase 1118902 MSS4 30036137 MSS4 Sugiyamaella lignohabitans 1-phosphatidylinositol-4-phosphate 5-kinase XP_018733722.1 1117079 D 796027 CDS AWJ20_4049 30036138 1120783..1121862 C 1 NC_031671.1 uncharacterized protein 1121862 30036138 AWJ20_4049 Sugiyamaella lignohabitans uncharacterized protein XP_018733723.1 1120783 D 796027 CDS AWJ20_4050 30036140 1124805..1126031 C 1 NC_031671.1 protein kinase IME2 1126031 IME2 30036140 IME2 Sugiyamaella lignohabitans protein kinase IME2 XP_018733724.1 1124805 D 796027 CDS AWJ20_4051 30036141 complement(1126288..1126947) C 1 NC_031671.1 GTP-binding protein of the Ras superfamily; involved in termination of M-phase; controls actomyosin and septin dynamics during cytokinesis; GO_component: GO:0005816 - spindle pole body [Evidence IDA] [PMID 19154724]; GO_function: GO:0005525 - GTP binding [Evidence IEA,IEA]; GO_function: GO:0003924 - GTPase activity [Evidence IDA] [PMID 12048186]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0005515 - protein binding [Evidence IPI] [PMID 10688190]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0007067 - mitotic nuclear division [Evidence IEA]; GO_process: GO:0007096 - regulation of exit from mitosis [Evidence TAS] [PMID 16039591]; GO_process: GO:0007264 - small GTPase mediated signal transduction [Evidence IEA]; Ras family GTPase TEM1 1126947 TEM1 30036141 TEM1 Sugiyamaella lignohabitans Ras family GTPase TEM1 XP_018733725.1 1126288 R 796027 CDS AWJ20_4052 30036142 1128006..1128641 C 1 NC_031671.1 uncharacterized protein 1128641 30036142 AWJ20_4052 Sugiyamaella lignohabitans uncharacterized protein XP_018733726.1 1128006 D 796027 CDS AWJ20_4053 30036143 1131271..1132494 C 1 NC_031671.1 Acetohydroxyacid reductoisomerase and mtDNA binding protein; involved in branched-chain amino acid biosynthesis and maintenance of wild-type mitochondrial DNA; found in mitochondrial nucleoids; GO_component: GO:0042645 - mitochondrial nucleoid [Evidence IDA] [PMID 10869431]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 18193418]; GO_function: GO:0050662 - coenzyme binding [Evidence IEA]; GO_function: GO:0003690 - double-stranded DNA binding [Evidence IDA] [PMID 18023287]; GO_function: GO:0004455 - ketol-acid reductoisomerase activity [Evidence IEA,IEA]; GO_function: GO:0004455 - ketol-acid reductoisomerase activity [Evidence IMP] [PMID 14124940]; GO_function: GO:0004455 - ketol-acid reductoisomerase activity [Evidence IMP] [PMID 3027658]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor [Evidence IEA]; GO_process: GO:0009082 - branched-chain amino acid biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0009082 - branched-chain amino acid biosynthetic process [Evidence IMP] [PMID 14124940]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0009097 - isoleucine biosynthetic process [Evidence IEA]; GO_process: GO:0000002 - mitochondrial genome maintenance [Evidence IGI] [PMID 18826960]; GO_process: GO:0000002 - mitochondrial genome maintenance [Evidence IMP] [PMID 7621838]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0009099 - valine biosynthetic process [Evidence IEA]; ketol-acid reductoisomerase 1132494 ILV5 30036143 ILV5 Sugiyamaella lignohabitans ketol-acid reductoisomerase XP_018733727.1 1131271 D 796027 CDS AWJ20_4054 30036144 1135285..1137090 C 1 NC_031671.1 Phosphatidylinositol-4-phosphate 5-kinase; involved in actin cytoskeleton organization and cell morphogenesis; multicopy suppressor of stt4 mutation; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9624177]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 9624177]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IEA]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IDA] [PMID 9624177]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IDA] [PMID 9624178]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016307 - phosphatidylinositol phosphate kinase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0031321 - ascospore-type prospore assembly [Evidence IGI] [PMID 19502581]; GO_process: GO:0046488 - phosphatidylinositol metabolic process [Evidence IEA]; GO_process: GO:0046854 - phosphatidylinositol phosphorylation [Evidence IDA] [PMID 9624177]; GO_process: GO:0046854 - phosphatidylinositol phosphorylation [Evidence IDA] [PMID 9624178]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; 1-phosphatidylinositol-4-phosphate 5-kinase 1137090 MSS4 30036144 MSS4 Sugiyamaella lignohabitans 1-phosphatidylinositol-4-phosphate 5-kinase XP_018733728.1 1135285 D 796027 CDS AWJ20_4055 30036145 complement(1138124..1140604) C 1 NC_031671.1 Constituent of 66S pre-ribosomal particles; forms a complex with Nop7p and Ytm1p that is required for maturation of the large ribosomal subunit; required for maturation of the 25S and 5.8S ribosomal RNAs; homologous to mammalian Bop1; GO_component: GO:0070545 - PeBoW complex [Evidence IDA,IPI] [PMID 16287855]; GO_component: GO:0005730 - nucleolus [Evidence IEA,IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005654 - nucleoplasm [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IEA]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 11583614]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 17443350]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 23212245]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0043021 - ribonucleoprotein complex binding [Evidence IEA]; GO_process: GO:0000466 - maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IEA]; GO_process: GO:0000463 - maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IEA]; GO_process: GO:0006364 - rRNA processing [Evidence IEA,IEA]; GO_process: GO:0006364 - rRNA processing [Evidence IMP] [PMID 11522832]; GO_process: GO:0042273 - ribosomal large subunit biogenesis [Evidence IEA]; GO_process: GO:0042273 - ribosomal large subunit biogenesis [Evidence IPI] [PMID 16287855]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA,IEA]; Erb1p 1140604 ERB1 30036145 ERB1 Sugiyamaella lignohabitans Erb1p XP_018733729.1 1138124 R 796027 CDS AWJ20_4056 30036146 1141005..1141865 C 1 NC_031671.1 U2-snRNP associated splicing factor; similar to the mammalian splicing factor SAP49; proposed to function as a U2-snRNP assembly factor along with Hsh155p and binding partner Cus1p; contains two RNA recognition motifs (RRM); GO_component: GO:0005686 - U2 snRNP [Evidence IDA] [PMID 15565172]; GO_component: GO:0005686 - U2 snRNP [Evidence IDA] [PMID 16314500]; GO_component: GO:0071004 - U2-type prespliceosome [Evidence IDA] [PMID 16618970]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IDA] [PMID 9436903]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0000398 - mRNA splicing, via spliceosome [Evidence IPI] [PMID 16314500]; GO_process: GO:0000398 - mRNA splicing, via spliceosome [Evidence IMP,IPI] [PMID 9436903]; Hsh49p 1141865 HSH49 30036146 HSH49 Sugiyamaella lignohabitans Hsh49p XP_018733730.1 1141005 D 796027 CDS AWJ20_4057 30036147 complement(1142101..1143663) C 1 NC_031671.1 Protein involved in mating response; invasive/filamentous growth, and osmotolerance, acts as an adaptor that links G protein-associated Cdc42p-Ste20p complex to the effector Ste11p to modulate signal transduction; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 9742096]; GO_function: GO:0032093 - SAM domain binding [Evidence IDA] [PMID 16337230]; GO_function: GO:0019887 - protein kinase regulator activity [Evidence IDA,IPI] [PMID 10397774]; GO_process: GO:0000161 - MAPK cascade involved in osmosensory signaling pathway [Evidence IMP,IPI] [PMID 9742096]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0007050 - cell cycle arrest [Evidence IEA]; GO_process: GO:0034605 - cellular response to heat [Evidence IMP] [PMID 12455951]; GO_process: GO:0007232 - osmosensory signaling pathway via Sho1 osmosensor [Evidence IMP] [PMID 11370856]; GO_process: GO:0000750 - pheromone-dependent signal transduction involved in conjugation with cellular fusion [Evidence IMP,IPI] [PMID 8793874]; GO_process: GO:0019236 - response to pheromone [Evidence IEA]; GO_process: GO:0007165 - signal transduction [Evidence IEA]; GO_process: GO:0001402 - signal transduction involved in filamentous growth [Evidence IMP,IPI] [PMID 9738877]; Ste50p 1143663 STE50 30036147 STE50 Sugiyamaella lignohabitans Ste50p XP_018733731.1 1142101 R 796027 CDS AWJ20_4058 30036148 complement(1148799..1151465) C 1 NC_031671.1 uncharacterized protein 1151465 30036148 AWJ20_4058 Sugiyamaella lignohabitans uncharacterized protein XP_018733732.1 1148799 R 796027 CDS AWJ20_4059 30036149 1152565..1153131 C 1 NC_031671.1 uncharacterized protein 1153131 30036149 AWJ20_4059 Sugiyamaella lignohabitans uncharacterized protein XP_018733733.1 1152565 D 796027 CDS AWJ20_4060 30036151 complement(1155794..1157035) C 1 NC_031671.1 GDP-mannose pyrophosphorylase (mannose-1-phosphate guanyltransferase); synthesizes GDP-mannose from GTP and mannose-1-phosphate in cell wall biosynthesis; required for normal cell wall structure; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0005525 - GTP binding [Evidence IEA]; GO_function: GO:0004475 - mannose-1-phosphate guanylyltransferase activity [Evidence IEA]; GO_function: GO:0004475 - mannose-1-phosphate guanylyltransferase activity [Evidence IDA,IMP] [PMID 9195935]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016779 - nucleotidyltransferase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA,IEA]; GO_process: GO:0009298 - GDP-mannose biosynthetic process [Evidence IEA]; GO_process: GO:0009298 - GDP-mannose biosynthetic process [Evidence IDA,IMP] [PMID 9195935]; GO_process: GO:0009058 - biosynthetic process [Evidence IEA]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0000032 - cell wall mannoprotein biosynthetic process [Evidence IMP] [PMID 11055399]; GO_process: GO:0006486 - protein glycosylation [Evidence IMP] [PMID 9195935]; mannose-1-phosphate guanylyltransferase 1157035 PSA1 30036151 PSA1 Sugiyamaella lignohabitans mannose-1-phosphate guanylyltransferase XP_018733734.1 1155794 R 796027 CDS AWJ20_4061 30036152 complement(1160690..1162867) C 1 NC_031671.1 Catalytic subunit of the i-AAA protease complex; complex is located in the mitochondrial inner membrane; responsible for degradation of unfolded or misfolded mitochondrial gene products; serves as a nonconventional translocation motor to pull PNPase into the intermembrane space; also has a role in intermembrane space protein folding; mutation causes an elevated rate of mitochondrial turnover; GO_component: GO:0031942 - i-AAA complex [Evidence IDA] [PMID 16267274]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IDA] [PMID 8688560]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 11914276]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004176 - ATP-dependent peptidase activity [Evidence IMP] [PMID 15772085]; GO_function: GO:0004176 - ATP-dependent peptidase activity [Evidence IGI] [PMID 8688560]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004222 - metalloendopeptidase activity [Evidence IEA]; GO_function: GO:0008237 - metallopeptidase activity [Evidence IEA]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_process: GO:0006515 - misfolded or incompletely synthesized protein catabolic process [Evidence IMP] [PMID 18843051]; GO_process: GO:0006457 - protein folding [Evidence IMP] [PMID 22993211]; GO_process: GO:0045041 - protein import into mitochondrial intermembrane space [Evidence IDA,IMP] [PMID 16966379]; GO_process: GO:0051604 - protein maturation [Evidence IMP] [PMID 16966379]; GO_process: GO:0006508 - proteolysis [Evidence IEA,IEA]; i-AAA protease YME1 1162867 YME1 30036152 YME1 Sugiyamaella lignohabitans i-AAA protease YME1 XP_018733735.1 1160690 R 796027 CDS AWJ20_4062 30036153 1161813..1162091 C 1 NC_031671.1 uncharacterized protein 1162091 30036153 AWJ20_4062 Sugiyamaella lignohabitans uncharacterized protein XP_018733736.1 1161813 D 796027 CDS AWJ20_4063 30036154 complement(1170305..1171174) C 1 NC_031671.1 Esterase that can function as an S-formylglutathione hydrolase; non-essential intracellular esterase; may be involved in the detoxification of formaldehyde, which can be metabolized to S-formylglutathione; similar to human esterase D; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 10427036]; GO_function: GO:0018738 - S-formylglutathione hydrolase activity [Evidence IEA,IEA]; GO_function: GO:0018738 - S-formylglutathione hydrolase activity [Evidence IDA] [PMID 10427036]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_process: GO:0046294 - formaldehyde catabolic process [Evidence IEA]; GO_process: GO:0046294 - formaldehyde catabolic process [Evidence IMP] [PMID 10427036]; S-formylglutathione hydrolase 1171174 30036154 AWJ20_4063 Sugiyamaella lignohabitans S-formylglutathione hydrolase XP_018733737.1 1170305 R 796027 CDS AWJ20_4064 30036155 complement(1171610..1173238) C 1 NC_031671.1 Ubiquitin-protein ligase (E3); controls septin dynamics and spindle position checkpoint (SPOC) with ligase Dma1p by regulating recruitment of Elm1p to bud neck; regulates levels of eIF2 subunit Gcd11p, as well as abundance, localization, and ubiquitination of Cdk inhibitory kinase Swe1p; ortholog of human RNF8, similar to human Chfr; contains FHA and RING finger domains; DMA2 has a paralog, DMA1, that arose from the whole genome duplication; GO_component: GO:0032177 - cellular bud neck split septin rings [Evidence IMP] [PMID 23442799]; GO_component: GO:0005934 - cellular bud tip [Evidence IMP] [PMID 23442799]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence IDA,IMP] [PMID 18202552]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0032186 - cellular bud neck septin ring organization [Evidence IGI] [PMID 22570619]; GO_process: GO:0000132 - establishment of mitotic spindle orientation [Evidence IGI] [PMID 15146058]; GO_process: GO:0000132 - establishment of mitotic spindle orientation [Evidence IGI] [PMID 22570619]; GO_process: GO:0007067 - mitotic nuclear division [Evidence IEA]; GO_process: GO:0031578 - mitotic spindle orientation checkpoint [Evidence IGI] [PMID 15146058]; GO_process: GO:0031578 - mitotic spindle orientation checkpoint [Evidence IGI] [PMID 22570619]; GO_process: GO:0051865 - protein autoubiquitination [Evidence IDA] [PMID 18202552]; GO_process: GO:0097271 - protein localization to bud neck [Evidence IGI] [PMID 22570619]; GO_process: GO:0042787 - protein ubiquitination involved in ubiquitin-dependent protein catabolic process [Evidence IGI] [PMID 21562220]; GO_process: GO:0000921 - septin ring assembly [Evidence IGI] [PMID 15146058]; GO_process: GO:0000921 - septin ring assembly [Evidence IGI] [PMID 22570619]; ubiquitin-conjugating protein DMA2 1173238 DMA2 30036155 DMA2 Sugiyamaella lignohabitans ubiquitin-conjugating protein DMA2 XP_018733738.1 1171610 R 796027 CDS AWJ20_4065 30036156 1176319..1177995 C 1 NC_031671.1 Malate synthase, enzyme of the glyoxylate cycle; involved in utilization of non-fermentable carbon sources; expression is subject to carbon catabolite repression; localizes in peroxisomes during growth on oleic acid, otherwise cytosolic; can accept butyryl-CoA as acyl-CoA donor in addition to traditional substrate acetyl-CoA; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 11846793]; GO_component: GO:0009514 - glyoxysome [Evidence IEA,IEA]; GO_component: GO:0005782 - peroxisomal matrix [Evidence IDA] [PMID 11846793]; GO_component: GO:0005777 - peroxisome [Evidence IEA]; GO_component: GO:0005777 - peroxisome [Evidence IDA] [PMID 2211514]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0004474 - malate synthase activity [Evidence IEA,IEA]; GO_function: GO:0004474 - malate synthase activity [Evidence IMP] [PMID 23642236]; GO_function: GO:0004474 - malate synthase activity [Evidence IMP] [PMID 8878673]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006097 - glyoxylate cycle [Evidence IEA,IEA,IEA]; GO_process: GO:0006097 - glyoxylate cycle [Evidence IMP] [PMID 23642236]; GO_process: GO:0006097 - glyoxylate cycle [Evidence IMP] [PMID 8878673]; GO_process: GO:0006099 - tricarboxylic acid cycle [Evidence IEA]; malate synthase MLS1 1177995 MLS1 30036156 MLS1 Sugiyamaella lignohabitans malate synthase MLS1 XP_018733739.1 1176319 D 796027 CDS AWJ20_4066 30036157 complement(1179552..1180280) C 1 NC_031671.1 P-loop ATPase with similarity to human OLA1 and bacterial YchF; identified as specifically interacting with the proteasome; null mutant displays increased translation rate and increased readthrough of premature stop codons; protein abundance increases in response to hydrogen peroxide and to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 10684247]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016887 - ATPase activity [Evidence IEA]; GO_function: GO:0016887 - ATPase activity [Evidence IDA] [PMID 17430889]; GO_function: GO:0005525 - GTP binding [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0043023 - ribosomal large subunit binding [Evidence IEA]; GO_function: GO:0043022 - ribosome binding [Evidence IEA]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; Ola1p 1180280 OLA1 30036157 OLA1 Sugiyamaella lignohabitans Ola1p XP_018733740.1 1179552 R 796027 CDS AWJ20_4067 30036158 complement(1181633..1182160) C 1 NC_031671.1 uncharacterized protein 1182160 30036158 AWJ20_4067 Sugiyamaella lignohabitans uncharacterized protein XP_018733741.1 1181633 R 796027 CDS AWJ20_4068 30036159 complement(1182300..1182536) C 1 NC_031671.1 uncharacterized protein 1182536 30036159 AWJ20_4068 Sugiyamaella lignohabitans uncharacterized protein XP_018733742.1 1182300 R 796027 CDS AWJ20_4069 30036160 complement(1183720..1184400) C 1 NC_031671.1 hypothetical protein; may interact with ribosomes, based on co-purification experiments; member of the ovarian tumor-like (OTU) superfamily of predicted cysteine proteases; shows cytoplasmic localization; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005840 - ribosome [Evidence IDA] [PMID 16702403]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; Otu2p 1184400 OTU2 30036160 OTU2 Sugiyamaella lignohabitans Otu2p XP_018733743.1 1183720 R 796027 CDS AWJ20_4070 30036162 complement(1185162..1187309) C 1 NC_031671.1 Pentatricopeptide repeat-containing protein 1187309 30036162 AWJ20_4070 Sugiyamaella lignohabitans Pentatricopeptide repeat-containing protein XP_018733744.1 1185162 R 796027 CDS AWJ20_4071 30036163 1192110..1194677 C 1 NC_031671.1 uncharacterized protein 1194677 30036163 AWJ20_4071 Sugiyamaella lignohabitans uncharacterized protein XP_018733745.1 1192110 D 796027 CDS AWJ20_4072 30036164 1198660..1200927 C 1 NC_031671.1 Type II integral membrane protein; required for beta-1,6 glucan biosynthesis; putative beta-glucan synthase; localizes to ER, plasma membrane, sites of polarized growth and secretory vesicles; functionally redundant with Skn1p; KRE6 has a paralog, SKN1, that arose from the whole genome duplication; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA]; GO_component: GO:0030176 - integral component of endoplasmic reticulum membrane [Evidence IDA] [PMID 17893149]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IDA] [PMID 7929594]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 21193403]; GO_component: GO:0030427 - site of polarized growth [Evidence IDA] [PMID 21193403]; GO_component: GO:0030133 - transport vesicle [Evidence IDA] [PMID 21193403]; GO_function: GO:0015926 - glucosidase activity [Evidence IMP,ISS] [PMID 10601196]; GO_process: GO:0006078 - (1->6)-beta-D-glucan biosynthetic process [Evidence IMP,ISS] [PMID 7929594]; GO_process: GO:0031505 - fungal-type cell wall organization [Evidence IMP] [PMID 7929594]; beta-glucan synthesis-associated protein KRE6 1200927 KRE6 30036164 KRE6 Sugiyamaella lignohabitans beta-glucan synthesis-associated protein KRE6 XP_018733746.1 1198660 D 796027 CDS AWJ20_4073 30036165 1201629..1202486 C 1 NC_031671.1 Protein involved in iron metabolism in mitochondria; similar to NifU, which is a protein required for the maturation of the Fe/S clusters of nitrogenase in nitrogen-fixing bacteria; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA]; GO_component: GO:0005759 - mitochondrial matrix [Evidence IDA] [PMID 10468587]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0005506 - iron ion binding [Evidence IEA]; GO_function: GO:0051536 - iron-sulfur cluster binding [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006879 - cellular iron ion homeostasis [Evidence IMP,ISS] [PMID 10468587]; GO_process: GO:0006880 - intracellular sequestering of iron ion [Evidence IMP] [PMID 10588895]; GO_process: GO:0016226 - iron-sulfur cluster assembly [Evidence IEA]; GO_process: GO:0016226 - iron-sulfur cluster assembly [Evidence IMP] [PMID 10468587]; GO_process: GO:0016226 - iron-sulfur cluster assembly [Evidence IMP] [PMID 10588895]; GO_process: GO:0016226 - iron-sulfur cluster assembly [Evidence IMP] [PMID 12065597]; Nfu1p 1202486 NFU1 30036165 NFU1 Sugiyamaella lignohabitans Nfu1p XP_018733747.1 1201629 D 796027 CDS AWJ20_4074 30036166 complement(1203033..1205888) C 1 NC_031671.1 Poly(A) binding protein; part of the 3'-end RNA-processing complex, mediates interactions between the 5' cap structure and the 3' mRNA poly(A) tail, involved in control of poly(A) tail length, interacts with translation factor eIF-4G; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 15630021]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 15769879]; GO_component: GO:0010494 - cytoplasmic stress granule [Evidence IDA] [PMID 17908917]; GO_component: GO:0010494 - cytoplasmic stress granule [Evidence IDA] [PMID 18981231]; GO_component: GO:0010494 - cytoplasmic stress granule [Evidence IDA] [PMID 19470581]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11914276]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 15630021]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 15769879]; GO_component: GO:0005840 - ribosome [Evidence IDA] [PMID 8631901]; GO_function: GO:0003723 - RNA binding [Evidence IEA,IEA]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0008143 - poly(A) binding [Evidence IDA,IMP] [PMID 9193001]; GO_function: GO:0008428 - ribonuclease inhibitor activity [Evidence IDA] [PMID 11889048]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0051028 - mRNA transport [Evidence IEA]; GO_process: GO:0060211 - regulation of nuclear-transcribed mRNA poly(A) tail shortening [Evidence IDA,IMP] [PMID 17766253]; GO_process: GO:0006417 - regulation of translation [Evidence IEA]; GO_process: GO:0006446 - regulation of translational initiation [Evidence IDA,IMP] [PMID 10357826]; GO_process: GO:0006810 - transport [Evidence IEA]; polyadenylate-binding protein 1205888 PAB1 30036166 PAB1 Sugiyamaella lignohabitans polyadenylate-binding protein XP_018733748.1 1203033 R 796027 CDS AWJ20_4075 30036167 1209025..1210143 C 1 NC_031671.1 uncharacterized protein 1210143 30036167 AWJ20_4075 Sugiyamaella lignohabitans uncharacterized protein XP_018733749.1 1209025 D 796027 CDS AWJ20_4076 30036168 1211645..1213468 C 1 NC_031671.1 Protein required for inositol prototrophy; required for normal ER membrane biosynthesis; ortholog of the FIT family of proteins involved in triglyceride droplet biosynthesis and homologous to human FIT2; disputed role in the synthesis of inositol phospholipids from inositol; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 14562095]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0008654 - phospholipid biosynthetic process [Evidence IEA]; GO_process: GO:0008654 - phospholipid biosynthetic process [Evidence IMP] [PMID 22927826]; GO_process: GO:0006644 - phospholipid metabolic process [Evidence IMP] [PMID 7706223]; Scs3p 1213468 SCS3 30036168 SCS3 Sugiyamaella lignohabitans Scs3p XP_018733750.1 1211645 D 796027 CDS AWJ20_4077 30036169 1215404..1217140 C 1 NC_031671.1 Putative kinase; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0016773 - phosphotransferase activity, alcohol group as acceptor [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0005975 - carbohydrate metabolic process [Evidence IEA]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; putative phosphotransferase 1217140 30036169 AWJ20_4077 Sugiyamaella lignohabitans putative phosphotransferase XP_018733751.1 1215404 D 796027 CDS AWJ20_4078 30036170 complement(1217345..1220932) C 1 NC_031671.1 MRX complex DNA-binding subunit 1220932 RAD50 30036170 RAD50 Sugiyamaella lignohabitans MRX complex DNA-binding subunit XP_018733752.1 1217345 R 796027 CDS AWJ20_4079 30036171 complement(1225634..1228528) C 1 NC_031671.1 uncharacterized protein 1228528 30036171 AWJ20_4079 Sugiyamaella lignohabitans uncharacterized protein XP_018733753.1 1225634 R 796027 CDS AWJ20_4080 30036173 1230699..1231325 C 1 NC_031671.1 Cyclic nucleotide phosphodiesterase; hydrolyzes ADP-ribose 1'', 2''-cyclic phosphate to ADP-ribose 1''-phosphate; may have a role in tRNA splicing; no detectable phenotype is conferred by null mutation or by overexpression; protein abundance increases in response to DNA replication stress; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA,IEA]; GO_component: GO:0030136 - clathrin-coated vesicle [Evidence IDA] [PMID 14562095]; GO_function: GO:0004113 - 2',3'-cyclic-nucleotide 3'-phosphodiesterase activity [Evidence IEA]; GO_function: GO:0004113 - 2',3'-cyclic-nucleotide 3'-phosphodiesterase activity [Evidence IDA,IMP] [PMID 10734185]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0004112 - cyclic-nucleotide phosphodiesterase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_process: GO:0009187 - cyclic nucleotide metabolic process [Evidence IDA] [PMID 10734185]; Cpd1p 1231325 CPD1 30036173 CPD1 Sugiyamaella lignohabitans Cpd1p XP_018733754.1 1230699 D 796027 CDS AWJ20_4082 30036175 1232891..1234750 C 1 NC_031671.1 uncharacterized protein 1234750 30036175 AWJ20_4082 Sugiyamaella lignohabitans uncharacterized protein XP_018733755.1 1232891 D 796027 CDS AWJ20_4083 30036176 complement(1234947..1235870) C 1 NC_031671.1 8-oxo-dGTP diphosphatase; prevents spontaneous mutagenesis via sanitization of oxidized purine nucleoside triphosphates; can also act as peroxisomal pyrophosphatase with specificity for coenzyme A and CoA derivatives, may function to remove potentially toxic oxidized CoA disulfide from peroxisomes to maintain the capacity for beta-oxidation of fatty acids; nudix hydrolase family member; similar E. coli MutT and human, rat and mouse MTH1; GO_component: GO:0005777 - peroxisome [Evidence IEA,IEA]; GO_component: GO:0005777 - peroxisome [Evidence IDA] [PMID 10922370]; GO_function: GO:0008413 - 8-oxo-7,8-dihydroguanosine triphosphate pyrophosphatase activity [Evidence IDA,IMP] [PMID 15475388]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA,IEA]; GO_function: GO:0016818 - hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides [Evidence IEA]; GO_function: GO:0000287 - magnesium ion binding [Evidence IEA]; GO_function: GO:0030145 - manganese ion binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016462 - pyrophosphatase activity [Evidence IDA] [PMID 10922370]; GO_process: GO:0006281 - DNA repair [Evidence IMP] [PMID 15475388]; GO_process: GO:0009132 - nucleoside diphosphate metabolic process [Evidence IEA]; Pcd1p 1235870 PCD1 30036176 PCD1 Sugiyamaella lignohabitans Pcd1p XP_018733756.1 1234947 R 796027 CDS AWJ20_4084 30036177 1237151..1238761 C 1 NC_031671.1 uncharacterized protein 1238761 30036177 AWJ20_4084 Sugiyamaella lignohabitans uncharacterized protein XP_018733757.1 1237151 D 796027 CDS AWJ20_4085 30036178 complement(1238952..1240472) C 1 NC_031671.1 Mu1-like medium subunit of the AP-1 complex; binds clathrin; involved in clathrin-dependent Golgi protein sorting; the AP-1 complex is the clathrin-associated protein complex; GO_component: GO:0030121 - AP-1 adaptor complex [Evidence IPI,ISS] [PMID 10564262]; GO_component: GO:0030131 - clathrin adaptor complex [Evidence IEA]; GO_component: GO:0030665 - clathrin-coated vesicle membrane [Evidence IEA]; GO_component: GO:0005905 - coated pit [Evidence IEA,IEA]; GO_component: GO:0016023 - cytoplasmic membrane-bounded vesicle [Evidence IEA]; GO_component: GO:0031410 - cytoplasmic vesicle [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0030276 - clathrin binding [Evidence IPI,ISS] [PMID 10564262]; GO_process: GO:0006896 - Golgi to vacuole transport [Evidence IMP] [PMID 17003107]; GO_process: GO:0006886 - intracellular protein transport [Evidence IEA]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IEA]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IPI,ISS] [PMID 10564262]; Apm1p 1240472 APM1 30036178 APM1 Sugiyamaella lignohabitans Apm1p XP_018733758.1 1238952 R 796027 CDS AWJ20_4086 30036179 complement(join(1243377..1245199,1245281..1245305)) C 1 NC_031671.1 Phosphatidylinositol-4-phosphate 5-kinase; involved in actin cytoskeleton organization and cell morphogenesis; multicopy suppressor of stt4 mutation; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9624177]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 9624177]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IEA]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IDA] [PMID 9624177]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IDA] [PMID 9624178]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016307 - phosphatidylinositol phosphate kinase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0031321 - ascospore-type prospore assembly [Evidence IGI] [PMID 19502581]; GO_process: GO:0046488 - phosphatidylinositol metabolic process [Evidence IEA]; GO_process: GO:0046854 - phosphatidylinositol phosphorylation [Evidence IDA] [PMID 9624177]; GO_process: GO:0046854 - phosphatidylinositol phosphorylation [Evidence IDA] [PMID 9624178]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; 1-phosphatidylinositol-4-phosphate 5-kinase 1245305 MSS4 30036179 MSS4 Sugiyamaella lignohabitans 1-phosphatidylinositol-4-phosphate 5-kinase XP_018733759.1 1243377 R 796027 CDS AWJ20_4087 30036180 1247586..1249883 C 1 NC_031671.1 Isopropylmalate isomerase; catalyzes the second step in the leucine biosynthesis pathway; GO_component: GO:0009316 - 3-isopropylmalate dehydratase complex [Evidence IEA]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 4355481]; GO_function: GO:0003861 - 3-isopropylmalate dehydratase activity [Evidence IEA,IEA]; GO_function: GO:0003861 - 3-isopropylmalate dehydratase activity [Evidence IMP] [PMID 5724969]; GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA,IEA]; GO_function: GO:0051536 - iron-sulfur cluster binding [Evidence IEA]; GO_function: GO:0016829 - lyase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_process: GO:0009082 - branched-chain amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0009098 - leucine biosynthetic process [Evidence IEA,IEA,IEA]; GO_process: GO:0009098 - leucine biosynthetic process [Evidence IMP] [PMID 5724969]; GO_process: GO:0009098 - leucine biosynthetic process [Evidence IMP] [PMID 6323436]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; 3-isopropylmalate dehydratase LEU1 1249883 LEU1 30036180 LEU1 Sugiyamaella lignohabitans 3-isopropylmalate dehydratase LEU1 XP_018733760.1 1247586 D 796027 CDS AWJ20_4088 30036181 complement(1250086..1252281) C 1 NC_031671.1 Csc1p 1252281 30036181 AWJ20_4088 Sugiyamaella lignohabitans Csc1p XP_018733761.1 1250086 R 796027 CDS AWJ20_4089 30036182 complement(1254758..1255651) C 1 NC_031671.1 Peptidyl-prolyl cis-trans isomerase (cyclophilin); catalyzes the cis-trans isomerization of peptide bonds N-terminal to proline residues; plays a role in determining prion variants; binds to Hsp82p and contributes to chaperone activity; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 9191025]; GO_function: GO:0016853 - isomerase activity [Evidence IEA]; GO_function: GO:0003755 - peptidyl-prolyl cis-trans isomerase activity [Evidence IEA,IEA,IEA]; GO_function: GO:0003755 - peptidyl-prolyl cis-trans isomerase activity [Evidence IDA] [PMID 10942767]; GO_function: GO:0003755 - peptidyl-prolyl cis-trans isomerase activity [Evidence IDA] [PMID 9191025]; GO_function: GO:0051082 - unfolded protein binding [Evidence IDA] [PMID 10942767]; GO_process: GO:0006457 - protein folding [Evidence IEA,IEA]; GO_process: GO:0006457 - protein folding [Evidence IDA,IPI] [PMID 9927435]; GO_process: GO:0000413 - protein peptidyl-prolyl isomerization [Evidence IEA,IEA,IEA]; GO_process: GO:0042026 - protein refolding [Evidence IDA] [PMID 10942767]; peptidylprolyl isomerase CPR6 1255651 CPR6 30036182 CPR6 Sugiyamaella lignohabitans peptidylprolyl isomerase CPR6 XP_018733762.1 1254758 R 796027 CDS AWJ20_4090 30036184 complement(1256697..1257446) C 1 NC_031671.1 Muscle M-line assembly protein unc-89 1257446 MIF2 30036184 MIF2 Sugiyamaella lignohabitans Muscle M-line assembly protein unc-89 XP_018733763.1 1256697 R 796027 CDS AWJ20_4091 30036185 1258029..1259045 C 1 NC_031671.1 Cardiolipin synthase; produces cardiolipin, which is a phospholipid of the mitochondrial inner membrane that is required for normal mitochondrial membrane potential and function; required to maintain tubular mitochondrial morphology and functions in mitochondrial fusion; also required for normal vacuolar ion homeostasis; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0008808 - cardiolipin synthase activity [Evidence IDA] [PMID 7564918]; GO_function: GO:0008808 - cardiolipin synthase activity [Evidence IMP] [PMID 9614098]; GO_function: GO:0016780 - phosphotransferase activity, for other substituted phosphate groups [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006873 - cellular ion homeostasis [Evidence IMP] [PMID 18799619]; GO_process: GO:0008610 - lipid biosynthetic process [Evidence IDA] [PMID 7564918]; GO_process: GO:0008610 - lipid biosynthetic process [Evidence IMP] [PMID 9614098]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0007006 - mitochondrial membrane organization [Evidence IMP] [PMID 10777514]; GO_process: GO:0008654 - phospholipid biosynthetic process [Evidence IEA,IEA]; cardiolipin synthase 1259045 CRD1 30036185 CRD1 Sugiyamaella lignohabitans cardiolipin synthase XP_018733764.1 1258029 D 796027 CDS AWJ20_4092 30036186 complement(1259270..1260904) C 1 NC_031671.1 Subunit of the cytosolic chaperonin Cct ring complex; related to Tcp1p, required for the assembly of actin and tubulins in vivo; GO_component: GO:0005832 - chaperonin-containing T-complex [Evidence IPI] [PMID 15704212]; GO_component: GO:0005832 - chaperonin-containing T-complex [Evidence IDA] [PMID 16762366]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0051082 - unfolded protein binding [Evidence IEA]; GO_function: GO:0051082 - unfolded protein binding [Evidence IDA] [PMID 16762366]; GO_process: GO:0044267 - cellular protein metabolic process [Evidence IEA]; GO_process: GO:0006457 - protein folding [Evidence IEA]; GO_process: GO:0006457 - protein folding [Evidence IDA] [PMID 16762366]; Cct4p 1260904 CCT4 30036186 CCT4 Sugiyamaella lignohabitans Cct4p XP_018733765.1 1259270 R 796027 CDS AWJ20_4093 30036187 1259382..1260035 C 1 NC_031671.1 uncharacterized protein 1260035 30036187 AWJ20_4093 Sugiyamaella lignohabitans uncharacterized protein XP_018733766.1 1259382 D 796027 CDS AWJ20_4094 30036188 1261573..1262772 C 1 NC_031671.1 Protein involved in nutritional control of the cell cycle; regulates abundance of the translation initiation factor eIF2; ortholog of human D123 protein; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0007346 - regulation of mitotic cell cycle [Evidence IMP] [PMID 15319434]; GO_process: GO:0006417 - regulation of translation [Evidence IGI] [PMID 15319434]; Cdc123p 1262772 CDC123 30036188 CDC123 Sugiyamaella lignohabitans Cdc123p XP_018733767.1 1261573 D 796027 CDS AWJ20_4095 30036189 1263486..1263962 C 1 NC_031671.1 Essential component of the TIM23 complex; with Tim23p, contributes to the architecture and function of the import channel; may link the import motor to the core Translocase of the Inner Mitochondrial membrane (TIM23 complex); GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005744 - mitochondrial inner membrane presequence translocase complex [Evidence IEA]; GO_component: GO:0005744 - mitochondrial inner membrane presequence translocase complex [Evidence IDA] [PMID 15618217]; GO_component: GO:0005744 - mitochondrial inner membrane presequence translocase complex [Evidence IPI] [PMID 7600576]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0015450 - P-P-bond-hydrolysis-driven protein transmembrane transporter activity [Evidence IEA]; GO_function: GO:0015266 - protein channel activity [Evidence IMP] [PMID 11344168]; GO_function: GO:0015266 - protein channel activity [Evidence IMP] [PMID 15618217]; GO_process: GO:0006886 - intracellular protein transport [Evidence IEA]; GO_process: GO:0000002 - mitochondrial genome maintenance [Evidence IGI] [PMID 18826960]; GO_process: GO:0030150 - protein import into mitochondrial matrix [Evidence IMP] [PMID 11344168]; GO_process: GO:0030150 - protein import into mitochondrial matrix [Evidence IMP] [PMID 15618217]; GO_process: GO:0030150 - protein import into mitochondrial matrix [Evidence IMP] [PMID 7600576]; GO_process: GO:0030150 - protein import into mitochondrial matrix [Evidence IMP] [PMID 7919535]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; protein transporter TIM17 1263962 TIM17 30036189 TIM17 Sugiyamaella lignohabitans protein transporter TIM17 XP_018733768.1 1263486 D 796027 CDS AWJ20_4096 30036190 complement(1263503..1263886) C 1 NC_031671.1 uncharacterized protein 1263886 30036190 AWJ20_4096 Sugiyamaella lignohabitans uncharacterized protein XP_018733769.1 1263503 R 796027 CDS AWJ20_4097 30036191 1264627..1266798 C 1 NC_031671.1 uncharacterized protein 1266798 30036191 AWJ20_4097 Sugiyamaella lignohabitans uncharacterized protein XP_018733770.1 1264627 D 796027 CDS AWJ20_4098 30036192 1270742..1271377 C 1 NC_031671.1 uncharacterized protein 1271377 30036192 AWJ20_4098 Sugiyamaella lignohabitans uncharacterized protein XP_018733771.1 1270742 D 796027 CDS AWJ20_4099 30036193 complement(1271985..1272536) C 1 NC_031671.1 uncharacterized protein 1272536 30036193 AWJ20_4099 Sugiyamaella lignohabitans uncharacterized protein XP_018733772.1 1271985 R 796027 CDS AWJ20_4100 30036196 1272978..1274702 C 1 NC_031671.1 tRNA methyltransferase; two forms of the protein are made by alternative translation starts; localizes to both the nucleus and mitochondrion to produce the modified base N2,N2-dimethylguanosine in tRNAs in both compartments; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 7599275]; GO_component: GO:0005635 - nuclear envelope [Evidence IDA] [PMID 7599275]; GO_component: GO:0005637 - nuclear inner membrane [Evidence IEA]; GO_component: GO:0005637 - nuclear inner membrane [Evidence IMP] [PMID 19602197]; GO_component: GO:0005637 - nuclear inner membrane [Evidence IDA] [PMID 7599275]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA,IEA]; GO_function: GO:0008168 - methyltransferase activity [Evidence IEA]; GO_function: GO:0004809 - tRNA (guanine-N2-)-methyltransferase activity [Evidence IEA]; GO_function: GO:0004809 - tRNA (guanine-N2-)-methyltransferase activity [Evidence IDA,IMP] [PMID 9801306]; GO_function: GO:0000049 - tRNA binding [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0032259 - methylation [Evidence IEA]; GO_process: GO:0030488 - tRNA methylation [Evidence IMP] [PMID 2426253]; GO_process: GO:0008033 - tRNA processing [Evidence IEA,IEA]; Trm1p 1274702 TRM1 30036196 TRM1 Sugiyamaella lignohabitans Trm1p XP_018733773.1 1272978 D 796027 CDS AWJ20_4101 30036197 complement(1275145..1278597) C 1 NC_031671.1 Member of the PUF protein family; PUF family is defined by the presence of Pumilio homology domains that confer RNA binding activity; preferentially binds mRNAs encoding nucleolar ribosomal RNA-processing factors; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003729 - mRNA binding [Evidence ISS] [PMID 11101532]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 15024427]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 18327269]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_process: GO:0001308 - negative regulation of chromatin silencing involved in replicative cell aging [Evidence IGI,IMP] [PMID 9150138]; GO_process: GO:0017148 - negative regulation of translation [Evidence IDA] [PMID 20427513]; GO_process: GO:0000288 - nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay [Evidence IGI] [PMID 11101532]; GO_process: GO:0008104 - protein localization [Evidence IMP] [PMID 9150138]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Puf4p 1278597 PUF4 30036197 PUF4 Sugiyamaella lignohabitans Puf4p XP_018733774.1 1275145 R 796027 CDS AWJ20_4102 30036198 complement(1287534..1289027) C 1 NC_031671.1 uncharacterized protein 1289027 30036198 AWJ20_4102 Sugiyamaella lignohabitans uncharacterized protein XP_018733775.1 1287534 R 796027 CDS AWJ20_4103 30036199 complement(1289652..1292459) C 1 NC_031671.1 Plasma membrane H+-ATPase; pumps protons out of the cell; major regulator of cytoplasmic pH and plasma membrane potential; P2-type ATPase; Hsp30p plays a role in Pma1p regulation; interactions with Std1p appear to propagate [GAR+]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0045121 - membrane raft [Evidence IDA] [PMID 10716729]; GO_component: GO:0045121 - membrane raft [Evidence IDA] [PMID 15536122]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 11739806]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 12469340]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 16622836]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0016887 - ATPase activity [Evidence IEA]; GO_function: GO:0019829 - cation-transporting ATPase activity [Evidence IEA]; GO_function: GO:0008553 - hydrogen-exporting ATPase activity, phosphorylative mechanism [Evidence IEA]; GO_function: GO:0008553 - hydrogen-exporting ATPase activity, phosphorylative mechanism [Evidence IDA] [PMID 17912695]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA,IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_process: GO:0006754 - ATP biosynthetic process [Evidence IEA]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0006812 - cation transport [Evidence IEA]; GO_process: GO:1902600 - hydrogen ion transmembrane transport [Evidence IEA]; GO_process: GO:0006811 - ion transport [Evidence IEA]; GO_process: GO:1902906 - proteasome storage granule assembly [Evidence IMP] [PMID 23690178]; GO_process: GO:0015992 - proton transport [Evidence IEA]; GO_process: GO:0015992 - proton transport [Evidence IDA] [PMID 8396147]; GO_process: GO:0006885 - regulation of pH [Evidence IEP] [PMID 8929277]; GO_process: GO:0055085 - transmembrane transport [Evidence IDA] [PMID 8396147]; GO_process: GO:0006810 - transport [Evidence IEA]; H(+)-exporting P2-type ATPase PMA1 1292459 PMA1 30036199 PMA1 Sugiyamaella lignohabitans H(+)-exporting P2-type ATPase PMA1 XP_018733776.1 1289652 R 796027 CDS AWJ20_4104 30036200 complement(1293140..1295671) C 1 NC_031671.1 Ubiquitin-protein ligase; involved in proteasome-dependent degradation of aberrant nuclear proteins; targets substrates with regions of exposed hydrophobicity containing 5 or more contiguous hydrophobic residues; contains intrinsically disordered regions that contribute to substrate recognition; prefers a window of exposed hydrophobicity that causes a particular level of protein insolubility, suggesting that San1p evolved to target highly aggregation-prone proteins; GO_component: GO:0005737 - cytoplasm [Evidence IMP] [PMID 20080635]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 15797381]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence IDA] [PMID 15078868]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence IDA] [PMID 15797381]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0071630 - nucleus-associated proteasomal ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 20080635]; GO_process: GO:0042787 - protein ubiquitination involved in ubiquitin-dependent protein catabolic process [Evidence IDA] [PMID 15078868]; GO_process: GO:0042787 - protein ubiquitination involved in ubiquitin-dependent protein catabolic process [Evidence IDA,IMP] [PMID 15797381]; GO_process: GO:0051788 - response to misfolded protein [Evidence IMP] [PMID 15797381]; ubiquitin-protein ligase SAN1 1295671 SAN1 30036200 SAN1 Sugiyamaella lignohabitans ubiquitin-protein ligase SAN1 XP_018733777.1 1293140 R 796027 CDS AWJ20_4105 30036201 complement(1297314..1297706) C 1 NC_031671.1 Cytosine deaminase; zinc metalloenzyme that catalyzes the hydrolytic deamination of cytosine to uracil; of biomedical interest because it also catalyzes the deamination of 5-fluorocytosine (5FC) to form anticancer drug 5-fluorouracil (5FU); GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0004131 - cytosine deaminase activity [Evidence IEA]; GO_function: GO:0004131 - cytosine deaminase activity [Evidence IDA] [PMID 15535715]; GO_function: GO:0004131 - cytosine deaminase activity [Evidence IDA] [PMID 9000374]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA,IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0044206 - UMP salvage [Evidence IEA]; GO_process: GO:0046087 - cytidine metabolic process [Evidence IMP] [PMID 10501935]; GO_process: GO:0019858 - cytosine metabolic process [Evidence IMP] [PMID 9000374]; GO_process: GO:0008655 - pyrimidine-containing compound salvage [Evidence IMP] [PMID 9000374]; cytosine deaminase 1297706 FCY1 30036201 FCY1 Sugiyamaella lignohabitans cytosine deaminase XP_018733778.1 1297314 R 796027 CDS AWJ20_4106 30036202 complement(1298237..1301596) C 1 NC_031671.1 Vacuolar alpha mannosidase; involved in free oligosaccharide (fOS) degradation; delivered to the vacuole in a novel pathway separate from the secretory pathway; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 3281936]; GO_component: GO:0005773 - vacuole [Evidence IEA,IEA]; GO_function: GO:0004559 - alpha-mannosidase activity [Evidence IEA,IEA]; GO_function: GO:0004559 - alpha-mannosidase activity [Evidence ISS] [PMID 2675832]; GO_function: GO:0004559 - alpha-mannosidase activity [Evidence IDA] [PMID 3281936]; GO_function: GO:0030246 - carbohydrate binding [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016798 - hydrolase activity, acting on glycosyl bonds [Evidence IEA]; GO_function: GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]; GO_function: GO:0015923 - mannosidase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0005975 - carbohydrate metabolic process [Evidence IEA]; GO_process: GO:0044262 - cellular carbohydrate metabolic process [Evidence ISS] [PMID 2675832]; GO_process: GO:0006013 - mannose metabolic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0009313 - oligosaccharide catabolic process [Evidence IMP] [PMID 12723970]; Ams1p 1301596 AMS1 30036202 AMS1 Sugiyamaella lignohabitans Ams1p XP_018733779.1 1298237 R 796027 CDS AWJ20_4107 30036203 complement(1302377..1303492) C 1 NC_031671.1 Fe(II)-dependent sulfonate/alpha-ketoglutarate dioxygenase; involved in sulfonate catabolism for use as a sulfur source; contains sequence that resembles a J domain (typified by the E. coli DnaJ protein); induced by sulphur starvation; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0051213 - dioxygenase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0000907 - sulfonate dioxygenase activity [Evidence IDA] [PMID 10482536]; GO_process: GO:0046306 - alkanesulfonate catabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0044273 - sulfur compound catabolic process [Evidence IMP] [PMID 10482536]; Jlp1p 1303492 JLP1 30036203 JLP1 Sugiyamaella lignohabitans Jlp1p XP_018733780.1 1302377 R 796027 CDS AWJ20_4108 30036204 complement(1303922..1307581) C 1 NC_031671.1 Subunit of the inner ring of the nuclear pore complex (NPC); contributes to NPC assembly and nucleocytoplasmic transport; both Nup170p and NUP157p are similar to human Nup155p; NUP170 has a paralog, NUP157, that arose from the whole genome duplication; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0031965 - nuclear membrane [Evidence IEA]; GO_component: GO:0005643 - nuclear pore [Evidence IEA,IEA,IEA]; GO_component: GO:0005643 - nuclear pore [Evidence IDA] [PMID 10684247]; GO_component: GO:0044611 - nuclear pore inner ring [Evidence IDA] [PMID 18046406]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_function: GO:0017056 - structural constituent of nuclear pore [Evidence IEA]; GO_function: GO:0017056 - structural constituent of nuclear pore [Evidence IMP] [PMID 12509452]; GO_function: GO:0017056 - structural constituent of nuclear pore [Evidence IMP] [PMID 17418788]; GO_function: GO:0017056 - structural constituent of nuclear pore [Evidence IMP] [PMID 19414606]; GO_function: GO:0017056 - structural constituent of nuclear pore [Evidence IGI] [PMID 19414608]; GO_function: GO:0017056 - structural constituent of nuclear pore [Evidence IGI] [PMID 20498018]; GO_process: GO:0007059 - chromosome segregation [Evidence IMP] [PMID 11290711]; GO_process: GO:0070869 - heterochromatin assembly involved in chromatin silencing [Evidence IMP] [PMID 23452847]; GO_process: GO:0051028 - mRNA transport [Evidence IEA]; GO_process: GO:0007094 - mitotic spindle assembly checkpoint [Evidence IGI,IMP,IPI] [PMID 12473689]; GO_process: GO:0051292 - nuclear pore complex assembly [Evidence IGI] [PMID 19414608]; GO_process: GO:0051292 - nuclear pore complex assembly [Evidence IGI] [PMID 20498018]; GO_process: GO:0006913 - nucleocytoplasmic transport [Evidence IEA]; GO_process: GO:0006913 - nucleocytoplasmic transport [Evidence IC] [PMID 10684247]; GO_process: GO:0036228 - protein targeting to nuclear inner membrane [Evidence IMP] [PMID 16929305]; GO_process: GO:0036228 - protein targeting to nuclear inner membrane [Evidence IMP] [PMID 21659568]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Nup170p 1307581 NUP170 30036204 NUP170 Sugiyamaella lignohabitans Nup170p XP_018733781.1 1303922 R 796027 CDS AWJ20_4109 30036205 1309183..1311084 C 1 NC_031671.1 pH sensor molecule, component of the RIM101 pathway; has a role in cell wall construction and alkaline pH response; is glycosylated and phosphorylated; interacts with Dfg16p and Rim9p to form a pH-sensing complex; localization to the plasma membrane is dependent on Dfg16p and Rim9p; has similarity to A. nidulans PalH; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 23019326]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0030437 - ascospore formation [Evidence IMP] [PMID 10821185]; GO_process: GO:0071469 - cellular response to alkalinity [Evidence IMP] [PMID 23019326]; GO_process: GO:0009272 - fungal-type cell wall biogenesis [Evidence IGI,IMP] [PMID 16524906]; GO_process: GO:0001403 - invasive growth in response to glucose limitation [Evidence IMP] [PMID 10821185]; Rim21p 1311084 RIM21 30036205 RIM21 Sugiyamaella lignohabitans Rim21p XP_018733782.1 1309183 D 796027 CDS AWJ20_4110 30036207 complement(1311241..1311726) C 1 NC_031671.1 uncharacterized protein 1311726 30036207 AWJ20_4110 Sugiyamaella lignohabitans uncharacterized protein XP_018733783.1 1311241 R 796027 CDS AWJ20_4111 30036208 complement(1311847..1312758) C 1 NC_031671.1 Subunit of the origin recognition complex (ORC); ORC directs DNA replication by binding to replication origins and is also involved in transcriptional silencing; ORC4 has a paralog, RIF2, that arose from the whole genome duplication; GO_component: GO:0031261 - DNA replication preinitiation complex [Evidence IDA] [PMID 9554851]; GO_component: GO:0005664 - nuclear origin of replication recognition complex [Evidence IDA,IMP] [PMID 9372948]; GO_component: GO:0005656 - nuclear pre-replicative complex [Evidence IDA] [PMID 16824194]; GO_component: GO:0005656 - nuclear pre-replicative complex [Evidence IDA] [PMID 9335335]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0000808 - origin recognition complex [Evidence IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0003688 - DNA replication origin binding [Evidence IDA] [PMID 16824194]; GO_process: GO:0006260 - DNA replication [Evidence IEA,IEA]; GO_process: GO:0006270 - DNA replication initiation [Evidence IMP] [PMID 16716188]; GO_process: GO:0030466 - chromatin silencing at silent mating-type cassette [Evidence IDA] [PMID 12897051]; GO_process: GO:0006267 - pre-replicative complex assembly involved in nuclear cell cycle DNA replication [Evidence IDA] [PMID 16824194]; origin recognition complex subunit 4 1312758 ORC4 30036208 ORC4 Sugiyamaella lignohabitans origin recognition complex subunit 4 XP_018733784.1 1311847 R 796027 CDS AWJ20_4112 30036209 1312948..1314735 C 1 NC_031671.1 uncharacterized protein 1314735 30036209 AWJ20_4112 Sugiyamaella lignohabitans uncharacterized protein XP_018733785.1 1312948 D 796027 CDS AWJ20_4113 30036210 complement(1314842..1315777) C 1 NC_031671.1 uncharacterized protein 1315777 30036210 AWJ20_4113 Sugiyamaella lignohabitans uncharacterized protein XP_018733786.1 1314842 R 796027 CDS AWJ20_4114 30036211 1316743..1317897 C 1 NC_031671.1 Peroxisomal signal receptor for peroxisomal matrix proteins; recognizes the N-terminal nonapeptide signal (PTS2); WD repeat protein; defects in human homolog cause lethal rhizomelic chondrodysplasia punctata (RCDP); GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 15545321]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 7957058]; GO_component: GO:0005777 - peroxisome [Evidence IEA,IEA]; GO_component: GO:0005777 - peroxisome [Evidence IDA] [PMID 15545321]; GO_component: GO:0005777 - peroxisome [Evidence IDA] [PMID 7535304]; GO_function: GO:0005053 - peroxisome matrix targeting signal-2 binding [Evidence IPI] [PMID 8636211]; GO_function: GO:0005053 - peroxisome matrix targeting signal-2 binding [Evidence IDA] [PMID 8670791]; GO_process: GO:0016560 - protein import into peroxisome matrix, docking [Evidence IPI] [PMID 10087260]; GO_process: GO:0016560 - protein import into peroxisome matrix, docking [Evidence IPI] [PMID 9094717]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Pex7p 1317897 PEX7 30036211 PEX7 Sugiyamaella lignohabitans Pex7p XP_018733787.1 1316743 D 796027 CDS AWJ20_4115 30036212 1319321..1319977 C 1 NC_031671.1 Spermidine synthase; involved in biosynthesis of spermidine and also in biosynthesis of pantothenic acid; spermidine is required for growth of wild-type cells; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0004766 - spermidine synthase activity [Evidence IEA]; GO_function: GO:0004766 - spermidine synthase activity [Evidence IMP,ISS] [PMID 9073064]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0015940 - pantothenate biosynthetic process [Evidence IMP] [PMID 11154694]; GO_process: GO:0006596 - polyamine biosynthetic process [Evidence IEA]; GO_process: GO:0008295 - spermidine biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0008295 - spermidine biosynthetic process [Evidence IMP] [PMID 9073064]; spermidine synthase 1319977 SPE3 30036212 SPE3 Sugiyamaella lignohabitans spermidine synthase XP_018733788.1 1319321 D 796027 CDS AWJ20_4116 30036213 1324349..1325254 C 1 NC_031671.1 Citrate synthase; catalyzes the condensation of acetyl coenzyme A and oxaloacetate to form citrate; the rate-limiting enzyme of the TCA cycle; nuclear encoded mitochondrial protein; CIT1 has a paralog, CIT2, that arose from the whole genome duplication; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 11502169]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 11914276]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IPI] [PMID 16962558]; GO_function: GO:0004108 - citrate (Si)-synthase activity [Evidence IEA,IEA]; GO_function: GO:0004108 - citrate (Si)-synthase activity [Evidence IDA,IMP] [PMID 17570335]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0046912 - transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer [Evidence IEA]; GO_process: GO:0046356 - acetyl-CoA catabolic process [Evidence IDA,IMP] [PMID 17570335]; GO_process: GO:0044262 - cellular carbohydrate metabolic process [Evidence IEA]; GO_process: GO:0006101 - citrate metabolic process [Evidence TAS] [PMID 9175438]; GO_process: GO:0006537 - glutamate biosynthetic process [Evidence TAS] [PMID 9175438]; GO_process: GO:0006099 - tricarboxylic acid cycle [Evidence IEA,IEA,IEA]; GO_process: GO:0006099 - tricarboxylic acid cycle [Evidence TAS] [PMID 9175438]; citrate (Si)-synthase CIT1 1325254 CIT1 30036213 CIT1 Sugiyamaella lignohabitans citrate (Si)-synthase CIT1 XP_018733789.1 1324349 D 796027 CDS AWJ20_4117 30036214 complement(1326740..1327636) C 1 NC_031671.1 uncharacterized protein 1327636 30036214 AWJ20_4117 Sugiyamaella lignohabitans uncharacterized protein XP_018733790.1 1326740 R 796027 CDS AWJ20_4118 30036215 complement(1332449..1335502) C 1 NC_031671.1 Cytoplasmic isoleucine-tRNA synthetase; target of the G1-specific inhibitor reveromycin A; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 7619074]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0002161 - aminoacyl-tRNA editing activity [Evidence IEA]; GO_function: GO:0004812 - aminoacyl-tRNA ligase activity [Evidence IEA,IEA]; GO_function: GO:0004822 - isoleucine-tRNA ligase activity [Evidence IEA,IEA]; GO_function: GO:0004822 - isoleucine-tRNA ligase activity [Evidence IDA] [PMID 7619074]; GO_function: GO:0004822 - isoleucine-tRNA ligase activity [Evidence IDA] [PMID 782885]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_process: GO:0006428 - isoleucyl-tRNA aminoacylation [Evidence IEA]; GO_process: GO:0006428 - isoleucyl-tRNA aminoacylation [Evidence IDA] [PMID 782885]; GO_process: GO:0006450 - regulation of translational fidelity [Evidence IEA]; GO_process: GO:0006418 - tRNA aminoacylation for protein translation [Evidence IEA]; GO_process: GO:0006412 - translation [Evidence IEA]; isoleucine--tRNA ligase ILS1 1335502 ILS1 30036215 ILS1 Sugiyamaella lignohabitans isoleucine--tRNA ligase ILS1 XP_018733791.1 1332449 R 796027 CDS AWJ20_4119 30036216 complement(1336438..1338888) C 1 NC_031671.1 uncharacterized protein 1338888 30036216 AWJ20_4119 Sugiyamaella lignohabitans uncharacterized protein XP_018733792.1 1336438 R 796027 CDS AWJ20_4120 30036218 1347097..1352190 C 1 NC_031671.1 Golgi-localized, leucine-zipper domain containing protein; involved in endosome to Golgi transport, organization of the ER, establishing cell polarity, and morphogenesis; detected in highly purified mitochondria in high-throughput studies; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005768 - endosome [Evidence IDA] [PMID 20477991]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005802 - trans-Golgi network [Evidence IDA] [PMID 16301316]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006895 - Golgi to endosome transport [Evidence IMP] [PMID 16301316]; GO_process: GO:0000902 - cell morphogenesis [Evidence IMP,ISS] [PMID 10931277]; GO_process: GO:0007029 - endoplasmic reticulum organization [Evidence IMP] [PMID 16301316]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Dop1p 1352190 DOP1 30036218 DOP1 Sugiyamaella lignohabitans Dop1p XP_018733793.1 1347097 D 796027 CDS AWJ20_4121 30036219 complement(1352554..1353240) C 1 NC_031671.1 S-adenosylmethionine-dependent methyltransferase; subunit of complex with Trm112p that methylates translation release factor Sup45p (eRF1) in the ternary complex eRF1-eRF3-GTP; similar to E.coli PrmC; member of the seven beta-strand family; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0035657 - eRF1 methyltransferase complex [Evidence IPI] [PMID 17008308]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity [Evidence IDA,IMP] [PMID 16321977]; GO_function: GO:0008168 - methyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0008276 - protein methyltransferase activity [Evidence IEA]; GO_function: GO:0008276 - protein methyltransferase activity [Evidence IDA] [PMID 15509572]; GO_function: GO:0008276 - protein methyltransferase activity [Evidence IDA] [PMID 17008308]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0032259 - methylation [Evidence IEA,IEA]; GO_process: GO:0018364 - peptidyl-glutamine methylation [Evidence IDA] [PMID 15509572]; GO_process: GO:0018364 - peptidyl-glutamine methylation [Evidence IDA] [PMID 17008308]; GO_process: GO:0006417 - regulation of translation [Evidence IDA] [PMID 15509572]; GO_process: GO:0006417 - regulation of translation [Evidence IDA] [PMID 16321977]; Mtq2p 1353240 MTQ2 30036219 MTQ2 Sugiyamaella lignohabitans Mtq2p XP_018733794.1 1352554 R 796027 CDS AWJ20_4122 30036220 1354688..1356763 C 1 NC_031671.1 Member of the NineTeen Complex (NTC); this complex contains Prp19p and stabilizes U6 snRNA in catalytic forms of the spliceosome containing U2, U5, and U6 snRNAs; homolog of Drosophila crooked neck protein; interacts with U1 snRNP proteins; GO_component: GO:0000974 - Prp19 complex [Evidence IDA] [PMID 11842115]; GO_component: GO:0071006 - U2-type catalytic step 1 spliceosome [Evidence IDA] [PMID 11105756]; GO_component: GO:0071006 - U2-type catalytic step 1 spliceosome [Evidence IDA] [PMID 11842115]; GO_component: GO:0071007 - U2-type catalytic step 2 spliceosome [Evidence IDA] [PMID 11105756]; GO_component: GO:0071008 - U2-type post-mRNA release spliceosomal complex [Evidence IDA] [PMID 11105756]; GO_component: GO:0071004 - U2-type prespliceosome [Evidence IDA] [PMID 11105756]; GO_component: GO:0000785 - chromatin [Evidence IDA] [PMID 11973290]; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005681 - spliceosomal complex [Evidence IEA]; GO_function: GO:0003688 - DNA replication origin binding [Evidence IDA] [PMID 11973290]; GO_function: GO:0003682 - chromatin binding [Evidence IDA] [PMID 11973290]; GO_function: GO:0000384 - first spliceosomal transesterification activity [Evidence IC] [PMID 11105756]; GO_function: GO:0000384 - first spliceosomal transesterification activity [Evidence IC] [PMID 11842115]; GO_function: GO:0000386 - second spliceosomal transesterification activity [Evidence IC] [PMID 11105756]; GO_process: GO:0006270 - DNA replication initiation [Evidence IMP,IPI] [PMID 11973290]; GO_process: GO:0006396 - RNA processing [Evidence IEA]; GO_process: GO:0008380 - RNA splicing [Evidence IEA]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0000354 - cis assembly of pre-catalytic spliceosome [Evidence IMP,IPI] [PMID 10445879]; GO_process: GO:0000354 - cis assembly of pre-catalytic spliceosome [Evidence IMP] [PMID 12509417]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; Clf1p 1356763 CLF1 30036220 CLF1 Sugiyamaella lignohabitans Clf1p XP_018733795.1 1354688 D 796027 CDS AWJ20_4123 30036221 complement(1356988..1358946) C 1 NC_031671.1 Component of commitment complex; which defines first step in splicing pathway; essential protein that interacts with Mud2p and Prp40p, forming a bridge between the intron ends; also involved in nuclear retention of pre-mRNA; relocalizes to the cytosol in response to hypoxia; GO_component: GO:0000243 - commitment complex [Evidence IDA] [PMID 10376880]; GO_component: GO:0000243 - commitment complex [Evidence IDA] [PMID 9150140]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 22932476]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22932476]; GO_function: GO:0003723 - RNA binding [Evidence IEA,IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0045131 - pre-mRNA branch point binding [Evidence IDA] [PMID 9182766]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0008380 - RNA splicing [Evidence IEA]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0000398 - mRNA splicing, via spliceosome [Evidence IPI] [PMID 9182766]; Msl5p 1358946 MSL5 30036221 MSL5 Sugiyamaella lignohabitans Msl5p XP_018733796.1 1356988 R 796027 CDS AWJ20_4124 30036222 complement(1360872..1363469) C 1 NC_031671.1 uncharacterized protein 1363469 30036222 AWJ20_4124 Sugiyamaella lignohabitans uncharacterized protein XP_018733797.1 1360872 R 796027 CDS AWJ20_4125 30036223 complement(1364083..1366059) C 1 NC_031671.1 NADPH oxidase localized to the perinuclear ER; produces superoxide from NADPH; overexpression causes MCA1 dependent apoptosis; likely involved in superoxide-mediated regulation of the actin cytoskeleton; member of a conserved superfamily of NADPH oxidases (NOX enzymes); has similarity to iron/copper reductases (FRE1-8), particularly Fre8p; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 10341420]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0097038 - perinuclear endoplasmic reticulum [Evidence IDA] [PMID 22586098]; GO_component: GO:0005840 - ribosome [Evidence IDA] [PMID 16702403]; GO_function: GO:0000293 - ferric-chelate reductase activity [Evidence IMP] [PMID 22586098]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0016722 - oxidoreductase activity, oxidizing metal ions [Evidence ISA] [PMID 10341420]; GO_function: GO:0016175 - superoxide-generating NADPH oxidase activity [Evidence IMP] [PMID 22586098]; GO_process: GO:0006915 - apoptotic process [Evidence IGI] [PMID 22586098]; GO_process: GO:0006811 - ion transport [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0032956 - regulation of actin cytoskeleton organization [Evidence IMP] [PMID 22586098]; Aim14p 1366059 AIM14 30036223 AIM14 Sugiyamaella lignohabitans Aim14p XP_018733798.1 1364083 R 796027 CDS AWJ20_4126 30036224 complement(1366833..1367672) C 1 NC_031671.1 uncharacterized protein 1367672 30036224 AWJ20_4126 Sugiyamaella lignohabitans uncharacterized protein XP_018733799.1 1366833 R 796027 CDS AWJ20_4127 30036225 complement(1367969..1370653) C 1 NC_031671.1 Subunit of the mRNA cleavage and polyadenlylation factor (CPF); required for pre-mRNA cleavage, polyadenylation and poly(A) site recognition, 43% similarity with the mammalian CPSF-100 protein; GO_component: GO:0005847 - mRNA cleavage and polyadenylation specificity factor complex [Evidence IEA]; GO_component: GO:0005847 - mRNA cleavage and polyadenylation specificity factor complex [Evidence IPI] [PMID 10523662]; GO_component: GO:0005847 - mRNA cleavage and polyadenylation specificity factor complex [Evidence IDA] [PMID 12819204]; GO_component: GO:0005847 - mRNA cleavage and polyadenylation specificity factor complex [Evidence IPI] [PMID 9099738]; GO_component: GO:0005849 - mRNA cleavage factor complex [Evidence IPI] [PMID 9099738]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0003723 - RNA binding [Evidence IPI] [PMID 9099738]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_process: GO:0006379 - mRNA cleavage [Evidence IEA]; GO_process: GO:0006379 - mRNA cleavage [Evidence IDA] [PMID 11344258]; GO_process: GO:0006378 - mRNA polyadenylation [Evidence IEA]; GO_process: GO:0006378 - mRNA polyadenylation [Evidence IDA] [PMID 11344258]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; Cft2p 1370653 CFT2 30036225 CFT2 Sugiyamaella lignohabitans Cft2p XP_018733800.1 1367969 R 796027 CDS AWJ20_4128 30036226 complement(join(1372690..1373263,1373360..1373892)) C 1 NC_031671.1 Conserved NADPH oxidoreductase containing flavin mononucleotide (FMN); homologous to Oye2p with different ligand binding and catalytic properties; has potential roles in oxidative stress response and programmed cell death; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0010181 - FMN binding [Evidence IEA]; GO_function: GO:0003959 - NADPH dehydrogenase activity [Evidence IEA]; GO_function: GO:0003959 - NADPH dehydrogenase activity [Evidence IDA,ISS] [PMID 7836424]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0018548 - pentaerythritol trinitrate reductase activity [Evidence IEA]; GO_function: GO:0052690 - trichloro-p-hydroquinone reductive dehalogenase activity [Evidence IEA]; GO_process: GO:0006915 - apoptotic process [Evidence IMP] [PMID 17897954]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; Oye3p 1373892 OYE3 30036226 OYE3 Sugiyamaella lignohabitans Oye3p XP_018733801.1 1372690 R 796027 CDS AWJ20_4129 30036227 1374746..1375558 C 1 NC_031671.1 uncharacterized protein 1375558 30036227 AWJ20_4129 Sugiyamaella lignohabitans uncharacterized protein XP_018733802.1 1374746 D 796027 CDS AWJ20_4130 30036229 1376241..1377467 C 1 NC_031671.1 PT repeat family protein 1377467 30036229 AWJ20_4130 Sugiyamaella lignohabitans PT repeat family protein XP_018733803.1 1376241 D 796027 CDS AWJ20_4131 30036230 complement(1378147..1381095) C 1 NC_031671.1 Mitochondrial GTPase, present in complex with Ugo1p and Fzo1p; required for mitochondrial morphology, fusion, and genome maintenance; exists as long and short form with different distributions; ratio of long to short forms is regulated by Psd1p; homolog of human OPA1 involved in autosomal dominant optic atrophy; GO_component: GO:0031314 - extrinsic component of mitochondrial inner membrane [Evidence IDA] [PMID 11038181]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0031304 - intrinsic component of mitochondrial inner membrane [Evidence IDA] [PMID 19505460]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0030061 - mitochondrial crista [Evidence IDA] [PMID 19505460]; GO_component: GO:0097002 - mitochondrial inner boundary membrane [Evidence IDA] [PMID 19505460]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IDA] [PMID 11038181]; GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IDA] [PMID 12707284]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0005525 - GTP binding [Evidence IEA,IEA]; GO_function: GO:0003924 - GTPase activity [Evidence IEA]; GO_function: GO:0003924 - GTPase activity [Evidence ISA] [PMID 11038181]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006184 - GTP catabolic process [Evidence IEA]; GO_process: GO:0061025 - membrane fusion [Evidence IDA] [PMID 22977249]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0008053 - mitochondrial fusion [Evidence IDA] [PMID 12566426]; GO_process: GO:0008053 - mitochondrial fusion [Evidence IMP,IPI] [PMID 12808034]; GO_process: GO:0000002 - mitochondrial genome maintenance [Evidence IMP] [PMID 1532158]; GO_process: GO:0007005 - mitochondrion organization [Evidence IMP] [PMID 15125685]; dynamin-related GTPase MGM1 1381095 MGM1 30036230 MGM1 Sugiyamaella lignohabitans dynamin-related GTPase MGM1 XP_018733804.1 1378147 R 796027 CDS AWJ20_4132 30036231 1382685..1384100 C 1 NC_031671.1 uncharacterized protein 1384100 30036231 AWJ20_4132 Sugiyamaella lignohabitans uncharacterized protein XP_018733805.1 1382685 D 796027 CDS AWJ20_4133 30036232 1386707..1388764 C 1 NC_031671.1 Glycogen synthase; expression induced by glucose limitation, nitrogen starvation, environmental stress, and entry into stationary phase; GSY1 has a paralog, GSY2, that arose from the whole genome duplication; relocalizes from nucleus to cytoplasmic foci upon DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0004373 - glycogen (starch) synthase activity [Evidence IEA,IEA]; GO_function: GO:0004373 - glycogen (starch) synthase activity [Evidence IDA] [PMID 2123485]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA]; GO_process: GO:0005978 - glycogen biosynthetic process [Evidence IEA,IEA,IEA]; GO_process: GO:0005978 - glycogen biosynthetic process [Evidence IGI,IMP,ISS] [PMID 1908457]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; glycogen (starch) synthase GSY1 1388764 GSY1 30036232 GSY1 Sugiyamaella lignohabitans glycogen (starch) synthase GSY1 XP_018733806.1 1386707 D 796027 CDS AWJ20_4135 30036234 1396034..1396909 C 1 NC_031671.1 Epoxide hydrolase; member of the alpha/beta hydrolase fold family; may have a role in detoxification of epoxides; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0004301 - epoxide hydrolase activity [Evidence IDA,ISS] [PMID 15769598]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0009636 - response to toxic substance [Evidence ISS] [PMID 15769598]; epoxide hydrolase 1396909 30036234 AWJ20_4135 Sugiyamaella lignohabitans epoxide hydrolase XP_018733807.1 1396034 D 796027 CDS AWJ20_4136 30036235 1398757..1399701 C 1 NC_031671.1 Citrate and oxoglutarate carrier protein; exports citrate from and imports oxoglutarate into the mitochondrion, causing net export of NADPH reducing equivalents; also associates with mt nucleoids and has a role in replication and segregation of the mt genome; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence ISS] [PMID 9559855]; GO_component: GO:0042645 - mitochondrial nucleoid [Evidence IDA] [PMID 9742088]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 20371607]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0003677 - DNA binding [Evidence IDA] [PMID 9742088]; GO_function: GO:0005371 - tricarboxylate secondary active transmembrane transporter activity [Evidence IDA] [PMID 20371607]; GO_function: GO:0005371 - tricarboxylate secondary active transmembrane transporter activity [Evidence IDA] [PMID 9559855]; GO_process: GO:0015742 - alpha-ketoglutarate transport [Evidence IDA] [PMID 20371607]; GO_process: GO:0006843 - mitochondrial citrate transport [Evidence IDA] [PMID 20371607]; GO_process: GO:0000002 - mitochondrial genome maintenance [Evidence IGI,IMP] [PMID 9742088]; GO_process: GO:0006842 - tricarboxylic acid transport [Evidence IDA] [PMID 9559855]; Yhm2p 1399701 YHM2 30036235 YHM2 Sugiyamaella lignohabitans Yhm2p XP_018733808.1 1398757 D 796027 CDS AWJ20_4137 30036236 complement(1399906..1400814) C 1 NC_031671.1 Assembly factor for the F0 sector of mitochondrial F1F0 ATP synthase; mitochondrial inner membrane protein; interacts genetically with ATP6; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0032592 - integral component of mitochondrial membrane [Evidence IDA] [PMID 2141026]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA,IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IPI] [PMID 14998992]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 22842922]; GO_function: GO:0051082 - unfolded protein binding [Evidence IPI] [PMID 14998992]; GO_process: GO:0033615 - mitochondrial proton-transporting ATP synthase complex assembly [Evidence IEA]; GO_process: GO:0033615 - mitochondrial proton-transporting ATP synthase complex assembly [Evidence IMP,IPI] [PMID 14998992]; Atp10p 1400814 ATP10 30036236 ATP10 Sugiyamaella lignohabitans Atp10p XP_018733809.1 1399906 R 796027 CDS AWJ20_4138 30036237 1404245..1405591 C 1 NC_031671.1 ATP-dependent DNA helicase SGS1 1405591 SGS1 30036237 SGS1 Sugiyamaella lignohabitans ATP-dependent DNA helicase SGS1 XP_018733810.1 1404245 D 796027 CDS AWJ20_4139 30036238 complement(1406419..1409358) C 1 NC_031671.1 Nuclear pore protein; involved in nuclear export of pre-tRNA and in re-export of mature tRNAs after their retrograde import from the cytoplasm; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 18045534]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0016363 - nuclear matrix [Evidence IDA] [PMID 8366091]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0008536 - Ran GTPase binding [Evidence IDA] [PMID 9774653]; GO_function: GO:0000049 - tRNA binding [Evidence IEA]; GO_function: GO:0000049 - tRNA binding [Evidence TAS] [PMID 11959996]; GO_process: GO:0006409 - tRNA export from nucleus [Evidence IMP] [PMID 9802895]; GO_process: GO:0008033 - tRNA processing [Evidence IEA]; GO_process: GO:0071528 - tRNA re-export from nucleus [Evidence IGI] [PMID 20032305]; GO_process: GO:0006810 - transport [Evidence IEA]; Los1p 1409358 LOS1 30036238 LOS1 Sugiyamaella lignohabitans Los1p XP_018733811.1 1406419 R 796027 CDS AWJ20_4140 30036240 1411712..1412611 C 1 NC_031671.1 Methyltransferase required for synthesis of diphthamide; diphthamide is a modified histidine residue of translation elongation factor 2 (Eft1p or Eft2p); not essential for viability; GFP-Dph5p fusion protein localizes to the cytoplasm; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0004164 - diphthine synthase activity [Evidence IEA,IEA]; GO_function: GO:0004164 - diphthine synthase activity [Evidence IMP] [PMID 1508200]; GO_function: GO:0004164 - diphthine synthase activity [Evidence IDA] [PMID 3042777]; GO_function: GO:0008168 - methyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0032259 - methylation [Evidence IEA]; GO_process: GO:0017183 - peptidyl-diphthamide biosynthetic process from peptidyl-histidine [Evidence IEA,IEA]; GO_process: GO:0017183 - peptidyl-diphthamide biosynthetic process from peptidyl-histidine [Evidence IMP] [PMID 1508200]; GO_process: GO:0017183 - peptidyl-diphthamide biosynthetic process from peptidyl-histidine [Evidence IDA] [PMID 3042777]; diphthine synthase 1412611 DPH5 30036240 DPH5 Sugiyamaella lignohabitans diphthine synthase XP_018733812.1 1411712 D 796027 CDS AWJ20_4141 30036241 complement(1412876..1413778) C 1 NC_031671.1 Mitochondrial ribosomal protein of the large subunit; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0005762 - mitochondrial large ribosomal subunit [Evidence IPI] [PMID 12392552]; GO_component: GO:0005762 - mitochondrial large ribosomal subunit [Evidence IDA] [PMID 9151978]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA,IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IPI] [PMID 12392552]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IDA] [PMID 9151978]; GO_process: GO:0032543 - mitochondrial translation [Evidence IC] [PMID 12392552]; GO_process: GO:0032543 - mitochondrial translation [Evidence IC] [PMID 9151978]; GO_process: GO:0006412 - translation [Evidence IEA]; mitochondrial 54S ribosomal protein YmL40 1413778 MRPL40 30036241 MRPL40 Sugiyamaella lignohabitans mitochondrial 54S ribosomal protein YmL40 XP_018733813.1 1412876 R 796027 CDS AWJ20_4142 30036242 1414333..1416297 C 1 NC_031671.1 uncharacterized protein 1416297 30036242 AWJ20_4142 Sugiyamaella lignohabitans uncharacterized protein XP_018733814.1 1414333 D 796027 CDS AWJ20_4143 30036243 complement(1416983..1417936) C 1 NC_031671.1 Regulatory subunit of acetolactate synthase; acetolactate synthase catalyzes the first step of branched-chain amino acid biosynthesis; enhances activity of the Ilv2p catalytic subunit, localizes to mitochondria; GO_component: GO:0005948 - acetolactate synthase complex [Evidence IDA] [PMID 10213630]; GO_component: GO:0042645 - mitochondrial nucleoid [Evidence IDA] [PMID 15692048]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0003984 - acetolactate synthase activity [Evidence IEA]; GO_function: GO:0003984 - acetolactate synthase activity [Evidence IDA] [PMID 8972574]; GO_function: GO:0016597 - amino acid binding [Evidence IEA]; GO_function: GO:0030234 - enzyme regulator activity [Evidence IDA] [PMID 8972574]; GO_process: GO:0009082 - branched-chain amino acid biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0009082 - branched-chain amino acid biosynthetic process [Evidence IDA,ISS] [PMID 8972574]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0009097 - isoleucine biosynthetic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0009099 - valine biosynthetic process [Evidence IEA]; acetolactate synthase regulatory subunit 1417936 ILV6 30036243 ILV6 Sugiyamaella lignohabitans acetolactate synthase regulatory subunit XP_018733815.1 1416983 R 796027 CDS AWJ20_4144 30036244 complement(1425014..1425928) C 1 NC_031671.1 uncharacterized protein 1425928 30036244 AWJ20_4144 Sugiyamaella lignohabitans uncharacterized protein XP_018733816.1 1425014 R 796027 CDS AWJ20_4145 30036245 1427357..1428469 C 1 NC_031671.1 uncharacterized protein 1428469 30036245 AWJ20_4145 Sugiyamaella lignohabitans uncharacterized protein XP_018733817.1 1427357 D 796027 CDS AWJ20_4146 30036246 complement(1429049..1430683) C 1 NC_031671.1 Karyopherin alpha homolog; forms a dimer with karyopherin beta Kap95p to mediate import of nuclear proteins, binds the nuclear localization signal of the substrate during import; involved in cotranslational protein degradation; binds ribosome-bound nascent polypeptides; Srp1p and Sts1p couple proteasomes to nascent polypeptides emerging from the ribosome for cotranslational degradation; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 10725229]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0000176 - nuclear exosome (RNase complex) [Evidence IDA] [PMID 19046973]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 10725229]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11914276]; GO_component: GO:0048471 - perinuclear region of cytoplasm [Evidence IEA]; GO_function: GO:0008565 - protein transporter activity [Evidence IEA]; GO_function: GO:0008565 - protein transporter activity [Evidence IDA] [PMID 7622450]; GO_process: GO:0006606 - protein import into nucleus [Evidence IEA]; GO_process: GO:0006606 - protein import into nucleus [Evidence IMP] [PMID 19141610]; GO_process: GO:0006612 - protein targeting to membrane [Evidence IMP] [PMID 16929305]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; karyopherin alpha 1430683 SRP1 30036246 SRP1 Sugiyamaella lignohabitans karyopherin alpha XP_018733818.1 1429049 R 796027 CDS AWJ20_4148 30036248 1434267..1436228 C 1 NC_031671.1 ATPase involved in protein folding and the response to stress; plays a role in SRP-dependent cotranslational protein-membrane targeting and translocation; member of the heat shock protein 70 (HSP70) family; localized to the cytoplasm; SSA3 has a paralog, SSA4, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 10745074]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0016887 - ATPase activity [Evidence IGI] [PMID 3302682]; GO_function: GO:0016887 - ATPase activity [Evidence ISS] [PMID 8151709]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0051082 - unfolded protein binding [Evidence ISS] [PMID 8151709]; GO_function: GO:0051082 - unfolded protein binding [Evidence IGI] [PMID 9789005]; GO_process: GO:0006616 - SRP-dependent cotranslational protein targeting to membrane, translocation [Evidence IMP] [PMID 8754838]; GO_process: GO:0006515 - misfolded or incompletely synthesized protein catabolic process [Evidence IMP] [PMID 24855027]; GO_process: GO:0006457 - protein folding [Evidence IGI] [PMID 9789005]; GO_process: GO:0006950 - response to stress [Evidence IEA]; Hsp70 family ATPase SSA3 1436228 SSA3 30036248 SSA3 Sugiyamaella lignohabitans Hsp70 family ATPase SSA3 XP_018733819.1 1434267 D 796027 CDS AWJ20_4149 30036249 1437211..1437855 C 1 NC_031671.1 EFY87247|glutathione S-transferase [Metarhizium acridum CQMa 102]; glutathione S-transferase 1437855 GST1 30036249 GST1 Sugiyamaella lignohabitans glutathione S-transferase XP_018733820.1 1437211 D 796027 CDS AWJ20_4150 30036251 complement(1438159..1441302) C 1 NC_031671.1 High affinity Ca2+/Mn2+ P-type ATPase; required for Ca2+ and Mn2+ transport into Golgi; involved in Ca2+ dependent protein sorting and processing; D53A mutant (Mn2+ transporting) is rapamycin sensitive, Q783A mutant (Ca2+ transporting) is rapamycin resistant; Mn2+ transport into Golgi lumen appears to be required for rapamycin sensitivity; mutations in human homolog ATP2C1 cause acantholytic skin condition Hailey-Hailey disease; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA]; GO_component: GO:0000139 - Golgi membrane [Evidence IDA] [PMID 24124599]; GO_component: GO:0000139 - Golgi membrane [Evidence IDA] [PMID 9092527]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0005509 - calcium ion binding [Evidence IDA] [PMID 10545175]; GO_function: GO:0005388 - calcium-transporting ATPase activity [Evidence IEA,IEA]; GO_function: GO:0005388 - calcium-transporting ATPase activity [Evidence IDA,IMP] [PMID 10545175]; GO_function: GO:0005388 - calcium-transporting ATPase activity [Evidence IMP] [PMID 1379856]; GO_function: GO:0019829 - cation-transporting ATPase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0015410 - manganese-transporting ATPase activity [Evidence IDA] [PMID 10801856]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_process: GO:0070588 - calcium ion transmembrane transport [Evidence IEA,IEA]; GO_process: GO:0006816 - calcium ion transport [Evidence IEA,IEA]; GO_process: GO:0006816 - calcium ion transport [Evidence IDA,IMP] [PMID 10545175]; GO_process: GO:0006812 - cation transport [Evidence IEA]; GO_process: GO:0006874 - cellular calcium ion homeostasis [Evidence IGI] [PMID 23569283]; GO_process: GO:0006887 - exocytosis [Evidence IGI] [PMID 1379856]; GO_process: GO:0006811 - ion transport [Evidence IEA]; GO_process: GO:0006828 - manganese ion transport [Evidence IDA] [PMID 10801856]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Ca(2+)/Mn(2+)-transporting P-type ATPase PMR1 1441302 PMR1 30036251 PMR1 Sugiyamaella lignohabitans Ca(2+)/Mn(2+)-transporting P-type ATPase PMR1 XP_018733821.1 1438159 R 796027 CDS AWJ20_4151 30036252 complement(1445320..1446903) C 1 NC_031671.1 Nuclear dsRNA-specific ribonuclease (RNase III); involved in rDNA transcription, rRNA processing and U2 snRNA 3' end formation by cleavage of a stem-loop structure at the 3' end of U2 snRNA; involved in polyadenylation-independent transcription termination; involved in the cell wall stress response, regulating the degradation of cell wall integrity and morphogenesis checkpoint genes; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 15090619]; GO_component: GO:0005654 - nucleoplasm [Evidence IDA] [PMID 15090619]; GO_function: GO:0003723 - RNA binding [Evidence IEA,IEA]; GO_function: GO:0004519 - endonuclease activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0004518 - nuclease activity [Evidence IEA]; GO_function: GO:0004525 - ribonuclease III activity [Evidence IEA,IEA]; GO_function: GO:0004525 - ribonuclease III activity [Evidence IDA] [PMID 15766245]; GO_process: GO:0090501 - RNA phosphodiester bond hydrolysis [Evidence IEA,IEA]; GO_process: GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic [Evidence IEA,IEA]; GO_process: GO:0006396 - RNA processing [Evidence IEA]; GO_process: GO:0034473 - U1 snRNA 3'-end processing [Evidence IMP] [PMID 10508172]; GO_process: GO:0034475 - U4 snRNA 3'-end processing [Evidence IMP] [PMID 10508172]; GO_process: GO:0034476 - U5 snRNA 3'-end processing [Evidence IMP] [PMID 10508172]; GO_process: GO:0034963 - box C/D snoRNA processing [Evidence IMP] [PMID 23201338]; GO_process: GO:0034964 - box H/ACA snoRNA processing [Evidence IMP] [PMID 23201338]; GO_process: GO:0006325 - chromatin organization [Evidence IMP] [PMID 17991894]; GO_process: GO:0006379 - mRNA cleavage [Evidence IDA,IMP] [PMID 17158880]; GO_process: GO:0016075 - rRNA catabolic process [Evidence IEA]; GO_process: GO:0006364 - rRNA processing [Evidence IMP] [PMID 17991894]; GO_process: GO:0009303 - rRNA transcription [Evidence IMP] [PMID 17991894]; GO_process: GO:0060237 - regulation of fungal-type cell wall organization [Evidence IGI,IMP] [PMID 22576366]; GO_process: GO:0030847 - termination of RNA polymerase II transcription, exosome-dependent [Evidence IDA,IMP,IPI] [PMID 19818713]; Rnt1p 1446903 RNT1 30036252 RNT1 Sugiyamaella lignohabitans Rnt1p XP_018733822.1 1445320 R 796027 CDS AWJ20_4152 30036253 1447379..1448014 C 1 NC_031671.1 uncharacterized protein 1448014 30036253 AWJ20_4152 Sugiyamaella lignohabitans uncharacterized protein XP_018733823.1 1447379 D 796027 CDS AWJ20_4153 30036254 complement(1448080..1449990) C 1 NC_031671.1 Protein required for assembly of U2 snRNP into the spliceosome; forms a complex with Hsh49p and Hsh155p; GO_component: GO:0005686 - U2 snRNP [Evidence IDA] [PMID 15565172]; GO_component: GO:0005686 - U2 snRNP [Evidence IDA] [PMID 16314500]; GO_component: GO:0071004 - U2-type prespliceosome [Evidence IDA] [PMID 16618970]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0000398 - mRNA splicing, via spliceosome [Evidence IPI] [PMID 16314500]; GO_process: GO:0000245 - spliceosomal complex assembly [Evidence IDA] [PMID 8566755]; Cus1p 1449990 CUS1 30036254 CUS1 Sugiyamaella lignohabitans Cus1p XP_018733824.1 1448080 R 796027 CDS AWJ20_4154 30036255 1452400..1453398 C 1 NC_031671.1 hypothetical protein; green fluorescent protein (GFP)-fusion protein localizes to the mitochondrion; deletion confers sensitivity to 4-(N-(S-glutathionylacetyl)amino) phenylarsenoxide (GSAO); YOR305W is not an essential gene; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; Rrg7p 1453398 RRG7 30036255 RRG7 Sugiyamaella lignohabitans Rrg7p XP_018733825.1 1452400 D 796027 CDS AWJ20_4155 30036256 complement(1454121..1455590) C 1 NC_031671.1 adhesion and aggregation factor identified by ability to make transformed S. cerevisiae clump and stick to polystyrene beads; adhesion and aggregation factor 1455590 AAF1 30036256 AAF1 Sugiyamaella lignohabitans adhesion and aggregation factor XP_018733826.1 1454121 R 796027 CDS AWJ20_4156 30036257 1460556..1462088 C 1 NC_031671.1 Subunit of heterodimeric nuclear SUMO activating enzyme E1 with Aos1p; activates Smt3p (SUMO) before its conjugation to proteins (sumoylation), which may play a role in protein targeting; essential for viability; GO_component: GO:0031510 - SUMO activating enzyme complex [Evidence IPI] [PMID 9312010]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 7629121]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0019948 - SUMO activating enzyme activity [Evidence IDA,IMP] [PMID 9312010]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0008641 - small protein activating enzyme activity [Evidence IEA]; GO_process: GO:0006464 - cellular protein modification process [Evidence IEA]; GO_process: GO:0016925 - protein sumoylation [Evidence IEA]; GO_process: GO:0016925 - protein sumoylation [Evidence IDA,IMP] [PMID 9312010]; E1 ubiquitin-activating protein UBA2 1462088 UBA2 30036257 UBA2 Sugiyamaella lignohabitans E1 ubiquitin-activating protein UBA2 XP_018733827.1 1460556 D 796027 CDS AWJ20_4157 30036258 complement(1462299..1464053) C 1 NC_031671.1 Subunit of the GPI:protein transamidase complex; removes the GPI-anchoring signal and attaches GPI (glycosylphosphatidylinositol) to proteins in the ER; GO_component: GO:0042765 - GPI-anchor transamidase complex [Evidence IEA]; GO_component: GO:0042765 - GPI-anchor transamidase complex [Evidence IDA] [PMID 11598210]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0003923 - GPI-anchor transamidase activity [Evidence IC] [PMID 11598210]; GO_process: GO:0006506 - GPI anchor biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0016255 - attachment of GPI anchor to protein [Evidence IMP] [PMID 11598210]; GO_process: GO:0016255 - attachment of GPI anchor to protein [Evidence IMP] [PMID 7730400]; Gaa1p 1464053 GAA1 30036258 GAA1 Sugiyamaella lignohabitans Gaa1p XP_018733828.1 1462299 R 796027 CDS AWJ20_4158 30036259 1465423..1465950 C 1 NC_031671.1 uncharacterized protein 1465950 30036259 AWJ20_4158 Sugiyamaella lignohabitans uncharacterized protein XP_018733829.1 1465423 D 796027 CDS AWJ20_4159 30036260 complement(1466276..1468165) C 1 NC_031671.1 Subunit of the membrane-associated retromer complex; essential for endosome-to-Golgi retrograde protein transport; peripheral membrane protein that assembles onto the membrane with Vps5p to promote vesicle formation; required for recruiting the retromer complex to the endosome membranes; GO_component: GO:0012505 - endomembrane system [Evidence IEA]; GO_component: GO:0005768 - endosome [Evidence IPI] [PMID 9700157]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0030904 - retromer complex [Evidence IEA]; GO_component: GO:0030904 - retromer complex [Evidence IMP,IPI] [PMID 9700157]; GO_component: GO:0030905 - retromer complex, outer shell [Evidence IPI] [PMID 9700157]; GO_function: GO:0035091 - phosphatidylinositol binding [Evidence IEA]; GO_function: GO:0032266 - phosphatidylinositol-3-phosphate binding [Evidence IDA] [PMID 11557775]; GO_function: GO:0008565 - protein transporter activity [Evidence IMP,IPI] [PMID 9700157]; GO_process: GO:0015031 - protein transport [Evidence IEA,IEA]; GO_process: GO:0042147 - retrograde transport, endosome to Golgi [Evidence IEA]; GO_process: GO:0042147 - retrograde transport, endosome to Golgi [Evidence IPI] [PMID 9700157]; GO_process: GO:0006810 - transport [Evidence IEA]; Vps17p 1468165 VPS17 30036260 VPS17 Sugiyamaella lignohabitans Vps17p XP_018733830.1 1466276 R 796027 CDS AWJ20_4160 30036262 complement(1468843..1470993) C 1 NC_031671.1 uncharacterized protein 1470993 30036262 AWJ20_4160 Sugiyamaella lignohabitans uncharacterized protein XP_018733831.1 1468843 R 796027 CDS AWJ20_4161 30036263 1472082..1474418 C 1 NC_031671.1 Component of the RSC chromatin remodeling complex; interacts with Rsc3p, Rsc30p, Ldb7p, and Htl1p to form a module important for a broad range of RSC functions; involved in nuclear protein import and maintenance of proper telomere length; GO_component: GO:0016586 - RSC complex [Evidence IDA] [PMID 10619019]; GO_component: GO:0016586 - RSC complex [Evidence IDA] [PMID 12183366]; GO_component: GO:0016586 - RSC complex [Evidence IDA] [PMID 14729968]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11914276]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0015616 - DNA translocase activity [Evidence IDA] [PMID 12183366]; GO_function: GO:0015616 - DNA translocase activity [Evidence IDA] [PMID 16455496]; GO_function: GO:0015616 - DNA translocase activity [Evidence IDA] [PMID 17188033]; GO_function: GO:0015616 - DNA translocase activity [Evidence IDA] [PMID 17918861]; GO_process: GO:0043044 - ATP-dependent chromatin remodeling [Evidence IDA] [PMID 12183366]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IMP] [PMID 12482937]; GO_process: GO:0016568 - chromatin modification [Evidence IEA]; GO_process: GO:0006338 - chromatin remodeling [Evidence IC] [PMID 14729968]; GO_process: GO:0006337 - nucleosome disassembly [Evidence IDA] [PMID 16492771]; GO_process: GO:0006606 - protein import into nucleus [Evidence IMP] [PMID 2556404]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006368 - transcription elongation from RNA polymerase II promoter [Evidence IDA] [PMID 17081996]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Npl6p 1474418 NPL6 30036263 NPL6 Sugiyamaella lignohabitans Npl6p XP_018733832.1 1472082 D 796027 CDS AWJ20_4162 30036264 1475446..1476018 C 1 NC_031671.1 uncharacterized protein 1476018 30036264 AWJ20_4162 Sugiyamaella lignohabitans uncharacterized protein XP_018733833.1 1475446 D 796027 CDS AWJ20_4163 30036265 complement(1476588..1480496) C 1 NC_031671.1 Plasma membrane ATP-binding cassette (ABC) transporter; multidrug transporter mediates export of many different organic anions including oligomycin; homolog of human cystic fibrosis transmembrane receptor (CFTR); GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 9575223]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016887 - ATPase activity [Evidence IEA]; GO_function: GO:0042626 - ATPase activity, coupled to transmembrane movement of substances [Evidence IEA]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_function: GO:0008559 - xenobiotic-transporting ATPase activity [Evidence IDA,IMP] [PMID 23270647]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; GO_process: GO:0042908 - xenobiotic transport [Evidence IDA,IMP] [PMID 23270647]; ATP-binding cassette transporter YOR1 1480496 YOR1 30036265 YOR1 Sugiyamaella lignohabitans ATP-binding cassette transporter YOR1 XP_018733834.1 1476588 R 796027 CDS AWJ20_4164 30036266 1486231..1487604 C 1 NC_031671.1 uncharacterized protein 1487604 30036266 AWJ20_4164 Sugiyamaella lignohabitans uncharacterized protein XP_018733835.1 1486231 D 796027 CDS AWJ20_4165 30036267 1487990..1489969 C 1 NC_031671.1 Neurospora crassa e-Compendium ncu10311.3; CBS/PB1 domain-containing protein 1489969 30036267 AWJ20_4165 Sugiyamaella lignohabitans CBS/PB1 domain-containing protein XP_018733836.1 1487990 D 796027 CDS AWJ20_4166 30036268 complement(1490178..1490930) C 1 NC_031671.1 uncharacterized protein 1490930 30036268 AWJ20_4166 Sugiyamaella lignohabitans uncharacterized protein XP_018733837.1 1490178 R 796027 CDS AWJ20_4167 30036269 complement(1492457..1493227) C 1 NC_031671.1 Putative ferric reductase with similarity to Fre2p; expression induced by low iron levels; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_function: GO:0052851 - ferric-chelate reductase (NADPH) activity [Evidence IEA]; GO_function: GO:0000293 - ferric-chelate reductase activity [Evidence ISA] [PMID 9726978]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0006811 - ion transport [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; Fre5p 1493227 FRE5 30036269 FRE5 Sugiyamaella lignohabitans Fre5p XP_018733838.1 1492457 R 796027 CDS AWJ20_4168 30036270 1495214..1496527 C 1 NC_031671.1 Polyamine oxidase; converts spermine to spermidine, which is required for the essential hypusination modification of translation factor eIF-5A; also involved in pantothenic acid biosynthesis; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_function: GO:0052904 - N1-acetylspermidine:oxygen oxidoreductase (3-acetamidopropanal-forming) activity [Evidence IEA]; GO_function: GO:0052903 - N1-acetylspermine:oxygen oxidoreductase (3-acetamidopropanal-forming) activity [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0046592 - polyamine oxidase activity [Evidence IMP] [PMID 11154694]; GO_function: GO:0046592 - polyamine oxidase activity [Evidence IDA] [PMID 21067138]; GO_function: GO:0052902 - spermidine:oxygen oxidoreductase (3-aminopropanal-forming) activity [Evidence IEA]; GO_function: GO:0052901 - spermine:oxygen oxidoreductase (spermidine-forming) activity [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0015940 - pantothenate biosynthetic process [Evidence IMP] [PMID 11154694]; GO_process: GO:0006598 - polyamine catabolic process [Evidence IGI,IMP] [PMID 12586697]; polyamine oxidase 1496527 FMS1 30036270 FMS1 Sugiyamaella lignohabitans polyamine oxidase XP_018733839.1 1495214 D 796027 CDS AWJ20_4169 30036271 1496890..1497945 C 1 NC_031671.1 Adenine deaminase (adenine aminohydrolase); converts adenine to hypoxanthine; involved in purine salvage; transcriptionally regulated by nutrient levels and growth phase; Aah1p degraded upon entry into quiescence via SCF and the proteasome; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005829 - cytosol [Evidence IBA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0000034 - adenine deaminase activity [Evidence IEA,IEA,IEA]; GO_function: GO:0000034 - adenine deaminase activity [Evidence IDA,IMP] [PMID 1577682]; GO_function: GO:0019239 - deaminase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0006146 - adenine catabolic process [Evidence IEA,IEA]; GO_process: GO:0006146 - adenine catabolic process [Evidence IDA,IMP] [PMID 1577682]; GO_process: GO:0043103 - hypoxanthine salvage [Evidence IEA]; GO_process: GO:0043103 - hypoxanthine salvage [Evidence IDA,IMP] [PMID 1577682]; GO_process: GO:0009117 - nucleotide metabolic process [Evidence IEA]; GO_process: GO:0009168 - purine ribonucleoside monophosphate biosynthetic process [Evidence IEA]; GO_process: GO:0043101 - purine-containing compound salvage [Evidence IDA,IMP] [PMID 1577682]; adenine deaminase 1497945 AAH1 30036271 AAH1 Sugiyamaella lignohabitans adenine deaminase XP_018733840.1 1496890 D 796027 CDS AWJ20_4170 30036273 complement(1498159..1500495) C 1 NC_031671.1 Daughter cell-specific secreted protein with similarity to glucanases; degrades cell wall from the daughter side causing daughter to separate from mother; GO_component: GO:0030428 - cell septum [Evidence IDA] [PMID 12455695]; GO_component: GO:0005618 - cell wall [Evidence IEA,IEA]; GO_component: GO:0005576 - extracellular region [Evidence IEA]; GO_component: GO:0005576 - extracellular region [Evidence ISS] [PMID 11747810]; GO_component: GO:0009277 - fungal-type cell wall [Evidence IDA] [PMID 11935221]; GO_function: GO:0042973 - glucan endo-1,3-beta-D-glucosidase activity [Evidence IGI] [PMID 12455695]; GO_function: GO:0052861 - glucan endo-1,3-beta-glucanase activity, C-3 substituted reducing group [Evidence IEA,IEA]; GO_function: GO:0052862 - glucan endo-1,4-beta-glucanase activity, C-3 substituted reducing group [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016798 - hydrolase activity, acting on glycosyl bonds [Evidence IEA]; GO_process: GO:0016998 - cell wall macromolecule catabolic process [Evidence IEA]; GO_process: GO:0007109 - cytokinesis, completion of separation [Evidence IEP,ISS] [PMID 11747810]; GO_process: GO:0007109 - cytokinesis, completion of separation [Evidence IMP] [PMID 16328626]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; Dse4p 1500495 DSE4 30036273 DSE4 Sugiyamaella lignohabitans Dse4p XP_018733841.1 1498159 R 796027 CDS AWJ20_4171 30036274 1501640..1503223 C 1 NC_031671.1 Myo-inositol transporter; member of the sugar transporter superfamily; expressed constitutively; ITR2 has a paralog, ITR1, that arose from the whole genome duplication; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0016020 - membrane [Evidence ISS] [PMID 2040626]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 16233524]; GO_function: GO:0005365 - myo-inositol transmembrane transporter activity [Evidence IMP,ISS] [PMID 2040626]; GO_function: GO:0022891 - substrate-specific transmembrane transporter activity [Evidence IEA]; GO_function: GO:0022857 - transmembrane transporter activity [Evidence IEA]; GO_function: GO:0005215 - transporter activity [Evidence IEA]; GO_process: GO:0015798 - myo-inositol transport [Evidence IMP] [PMID 2040626]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; myo-inositol transporter ITR2 1503223 ITR2 30036274 ITR2 Sugiyamaella lignohabitans myo-inositol transporter ITR2 XP_018733842.1 1501640 D 796027 CDS AWJ20_4172 30036275 complement(1504609..1505151) C 1 NC_031671.1 Uncharacterized protein 1505151 30036275 AWJ20_4172 Sugiyamaella lignohabitans Uncharacterized protein XP_018733843.1 1504609 R 796027 CDS AWJ20_4173 30036276 1505987..1506469 C 1 NC_031671.1 uncharacterized protein 1506469 30036276 AWJ20_4173 Sugiyamaella lignohabitans uncharacterized protein XP_018733844.1 1505987 D 796027 CDS AWJ20_4174 30036277 1506713..1507192 C 1 NC_031671.1 uncharacterized protein 1507192 30036277 AWJ20_4174 Sugiyamaella lignohabitans uncharacterized protein XP_018733845.1 1506713 D 796027 CDS AWJ20_4175 30036278 1507616..1508338 C 1 NC_031671.1 Essential t-SNARE that mediates fusion of vesicles with the late Golgi; forms a complex with Tlg2p and Vti1p; mediates fusion of endosome-derived vesicles with the late Golgi; binds the docking complex VFT (Vps fifty-three) through interaction with Vps51p; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA,IEA]; GO_component: GO:0031201 - SNARE complex [Evidence IPI] [PMID 10397773]; GO_component: GO:0031901 - early endosome membrane [Evidence IEA]; GO_component: GO:0005768 - endosome [Evidence IEA]; GO_component: GO:0005768 - endosome [Evidence IDA] [PMID 9427746]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0031902 - late endosome membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005802 - trans-Golgi network [Evidence IDA] [PMID 15973437]; GO_function: GO:0005484 - SNAP receptor activity [Evidence IEA]; GO_function: GO:0005484 - SNAP receptor activity [Evidence IDA] [PMID 14981247]; GO_process: GO:0048193 - Golgi vesicle transport [Evidence IEA]; GO_process: GO:0006897 - endocytosis [Evidence IMP] [PMID 9427746]; GO_process: GO:0006886 - intracellular protein transport [Evidence IEA]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0006906 - vesicle fusion [Evidence IDA] [PMID 11739407]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IEA]; Tlg1p 1508338 TLG1 30036278 TLG1 Sugiyamaella lignohabitans Tlg1p XP_018733846.1 1507616 D 796027 CDS AWJ20_4176 30036279 join(1509559..1509592,1509942..1511221) C 1 NC_031671.1 Putative oxidoreductase involved in late endosome to Golgi transport; physical and genetical interactions with Btn2p; null mutant is viable, has extended S phase, and sensitive to expression of top1-T722A allele; similar to human FOXRED1; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 10684247]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 21441304]; GO_component: GO:0005768 - endosome [Evidence IEA]; GO_component: GO:0005770 - late endosome [Evidence IEA]; GO_component: GO:0005770 - late endosome [Evidence IDA] [PMID 21441304]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0042147 - retrograde transport, endosome to Golgi [Evidence IGI,IMP,IPI] [PMID 21441304]; GO_process: GO:0006810 - transport [Evidence IEA]; Tda3p 1511221 TDA3 30036279 TDA3 Sugiyamaella lignohabitans Tda3p XP_018733847.1 1509559 D 796027 CDS AWJ20_4177 30036280 1511744..1513945 C 1 NC_031671.1 Holliday junction resolvase; promotes template switching during break-induced replication (BIR), causing non-reciprocal translocations (NRTs); localization is cell-cycle dependent and regulated by Cdc28p phosphorylation; homolog of human GEN1; similar to S. cerevisiae endonuclease Rth1p; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 19520826]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 19520826]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0008821 - crossover junction endodeoxyribonuclease activity [Evidence IDA,IMP] [PMID 19020614]; GO_function: GO:0004519 - endonuclease activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0004518 - nuclease activity [Evidence IEA,IEA]; GO_function: GO:0000014 - single-stranded DNA endodeoxyribonuclease activity [Evidence ISS] [PMID 9683672]; GO_process: GO:0006281 - DNA repair [Evidence IEA,IEA]; GO_process: GO:0006281 - DNA repair [Evidence IGI] [PMID 20106725]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IGI] [PMID 20106725]; GO_process: GO:0090305 - nucleic acid phosphodiester bond hydrolysis [Evidence IEA,IEA]; Yen1p 1513945 YEN1 30036280 YEN1 Sugiyamaella lignohabitans Yen1p XP_018733848.1 1511744 D 796027 CDS AWJ20_4178 30036281 complement(1514140..1517022) C 1 NC_031671.1 serine/threonine protein kinase PKH2 1517022 PKH2 30036281 PKH2 Sugiyamaella lignohabitans serine/threonine protein kinase PKH2 XP_018733849.1 1514140 R 796027 CDS AWJ20_4182 30036286 complement(1522443..1524062) C 1 NC_031671.1 Vacuolar carboxypeptidase Y (proteinase C, CPY); broad-specificity C-terminal exopeptidase involved in non-specific protein degradation in the vacuole; member of the serine carboxypeptidase family; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 11914276]; GO_component: GO:0000324 - fungal-type vacuole [Evidence IDA] [PMID 14562095]; GO_component: GO:0000324 - fungal-type vacuole [Evidence IDA] [PMID 23708375]; GO_component: GO:0005773 - vacuole [Evidence IEA,IEA,IEA]; GO_function: GO:0004180 - carboxypeptidase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_function: GO:0004185 - serine-type carboxypeptidase activity [Evidence IEA]; GO_function: GO:0004185 - serine-type carboxypeptidase activity [Evidence IDA,IMP] [PMID 8679540]; GO_process: GO:0046938 - phytochelatin biosynthetic process [Evidence IDA,IMP] [PMID 17408619]; GO_process: GO:0006508 - proteolysis [Evidence IEA,IEA]; GO_process: GO:0007039 - vacuolar protein catabolic process [Evidence TAS] [PMID 8789256]; carboxypeptidase C PRC1 1524062 PRC1 30036286 PRC1 Sugiyamaella lignohabitans carboxypeptidase C PRC1 XP_018733850.1 1522443 R 796027 CDS AWJ20_4183 30036287 complement(1524537..1525598) C 1 NC_031671.1 Sumoylated protein localizing to the nuclear periphery of mother cells; localizes to a single spot on the nuclear periphery of mother cells but not daughters; interacts genetically with SMT3; UV-sensitive mutant phenotype and genetic interactions suggest a role in the DNA damage response; GO_component: GO:0005635 - nuclear envelope [Evidence IDA] [PMID 18336552]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006281 - DNA repair [Evidence IEA]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IGI] [PMID 15598824]; GO_process: GO:0016925 - protein sumoylation [Evidence IGI] [PMID 11606525]; GO_process: GO:0010224 - response to UV-B [Evidence IMP] [PMID 11606770]; GO_process: GO:0010224 - response to UV-B [Evidence IMP] [PMID 15598824]; GO_process: GO:0010225 - response to UV-C [Evidence IMP] [PMID 11606770]; GO_process: GO:0010225 - response to UV-C [Evidence IMP] [PMID 15598824]; Wss1p 1525598 WSS1 30036287 WSS1 Sugiyamaella lignohabitans Wss1p XP_018733851.1 1524537 R 796027 CDS AWJ20_4184 30036288 1526916..1531667 C 1 NC_031671.1 Separase, a caspase-like cysteine protease; promotes sister chromatid separation by mediating dissociation of the cohesin Scc1p from chromatin; inhibits protein phosphatase 2A-Cdc55p to promote mitotic exit; inhibited by Pds1p; relative distribution to the nucleus increases upon DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11149918]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11149918]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_component: GO:0005819 - spindle [Evidence IDA] [PMID 11149918]; GO_component: GO:0005816 - spindle pole body [Evidence IEA]; GO_function: GO:0004197 - cysteine-type endopeptidase activity [Evidence IDA] [PMID 11081625]; GO_function: GO:0008234 - cysteine-type peptidase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA,IEA]; GO_process: GO:0006915 - apoptotic process [Evidence IMP] [PMID 18321989]; GO_process: GO:0007059 - chromosome segregation [Evidence IEA]; GO_process: GO:0000070 - mitotic sister chromatid segregation [Evidence IMP,IPI] [PMID 9635435]; GO_process: GO:0034048 - negative regulation of protein phosphatase type 2A activity [Evidence IMP,IPI] [PMID 16713564]; GO_process: GO:0006508 - proteolysis [Evidence IEA,IEA]; GO_process: GO:0007096 - regulation of exit from mitosis [Evidence IGI,IPI] [PMID 12598903]; GO_process: GO:0032888 - regulation of mitotic spindle elongation [Evidence IGI,IMP] [PMID 18430955]; Esp1p 1531667 ESP1 30036288 ESP1 Sugiyamaella lignohabitans Esp1p XP_018733852.1 1526916 D 796027 CDS AWJ20_4185 30036289 1533011..1533751 C 1 NC_031671.1 uncharacterized protein 1533751 30036289 AWJ20_4185 Sugiyamaella lignohabitans uncharacterized protein XP_018733853.1 1533011 D 796027 CDS AWJ20_4186 30036290 complement(1533937..1536861) C 1 NC_031671.1 Protein that exhibits physical and genetic interactions with Rpb8p; Rpb8p is a subunit of RNA polymerases I, II, and III; computational analysis of large-scale protein-protein interaction data suggests a role in chromosome segregation; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; Nnf2p 1536861 NNF2 30036290 NNF2 Sugiyamaella lignohabitans Nnf2p XP_018733854.1 1533937 R 796027 CDS AWJ20_4187 30036291 1538362..1539468 C 1 NC_031671.1 5'-methylthioribose-1-phosphate isomerase; catalyzes the isomerization of 5-methylthioribose-1-phosphate to 5-methylthioribulose-1-phosphate in the methionine salvage pathway; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0046523 - S-methyl-5-thioribose-1-phosphate isomerase activity [Evidence IEA,IEA]; GO_function: GO:0046523 - S-methyl-5-thioribose-1-phosphate isomerase activity [Evidence IDA,ISS] [PMID 15215245]; GO_function: GO:0016853 - isomerase activity [Evidence IEA]; GO_process: GO:0019284 - L-methionine biosynthetic process from S-adenosylmethionine [Evidence IEA]; GO_process: GO:0019509 - L-methionine salvage from methylthioadenosine [Evidence IEA]; GO_process: GO:0019509 - L-methionine salvage from methylthioadenosine [Evidence IMP] [PMID 15215245]; GO_process: GO:0019509 - L-methionine salvage from methylthioadenosine [Evidence IMP] [PMID 18625006]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0044249 - cellular biosynthetic process [Evidence IEA]; GO_process: GO:0044237 - cellular metabolic process [Evidence IEA]; GO_process: GO:0009086 - methionine biosynthetic process [Evidence IEA]; S-methyl-5-thioribose-1-phosphate isomerase MRI1 1539468 MRI1 30036291 MRI1 Sugiyamaella lignohabitans S-methyl-5-thioribose-1-phosphate isomerase MRI1 XP_018733855.1 1538362 D 796027 CDS AWJ20_4188 30036292 complement(1539663..1541465) C 1 NC_031671.1 Alpha-1,2-mannosyltransferase; responsible for addition of the first alpha-1,2-linked mannose to form the branches on the mannan backbone of oligosaccharides, localizes to an early Golgi compartment; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0005794 - Golgi apparatus [Evidence IDA] [PMID 9756928]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0000026 - alpha-1,2-mannosyltransferase activity [Evidence IMP] [PMID 9756928]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006486 - protein glycosylation [Evidence IEA,IEA]; GO_process: GO:0006486 - protein glycosylation [Evidence IMP] [PMID 9756928]; Mnn2p 1541465 MNN2 30036292 MNN2 Sugiyamaella lignohabitans Mnn2p XP_018733856.1 1539663 R 796027 CDS AWJ20_4189 30036293 1543032..1544435 C 1 NC_031671.1 Integral subunit of the pre-mRNA CPF complex; the cleavage and polyadenylation factor (CPF) complex plays an essential role in mRNA 3'-end formation by bridging different processing factors and thereby promoting the assembly of the processing complex; GO_component: GO:0005847 - mRNA cleavage and polyadenylation specificity factor complex [Evidence IDA] [PMID 12819204]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0003723 - RNA binding [Evidence IC] [PMID 12819204]; GO_process: GO:0006379 - mRNA cleavage [Evidence IMP] [PMID 10619842]; GO_process: GO:0006379 - mRNA cleavage [Evidence IDA] [PMID 11344258]; GO_process: GO:0006378 - mRNA polyadenylation [Evidence IMP] [PMID 10619842]; GO_process: GO:0006378 - mRNA polyadenylation [Evidence IDA] [PMID 11344258]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; Pfs2p 1544435 PFS2 30036293 PFS2 Sugiyamaella lignohabitans Pfs2p XP_018733857.1 1543032 D 796027 CDS AWJ20_4190 30036295 complement(1544617..1547094) C 1 NC_031671.1 Dynamin-like GTPase that mediates homotypic ER fusion; has a role in ER morphology; interacts physically and genetically with Yop1p and Rtn1p; functional ortholog of the human atlastin ATL1, defects in which cause a form of the human disease hereditary spastic paraplegia; homolog of Arabidopsis RHD3; GO_component: GO:0032541 - cortical endoplasmic reticulum [Evidence IDA] [PMID 19665976]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 19665976]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0005525 - GTP binding [Evidence IEA,IEA]; GO_function: GO:0003924 - GTPase activity [Evidence IEA]; GO_function: GO:0003924 - GTPase activity [Evidence IMP] [PMID 19665976]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006184 - GTP catabolic process [Evidence IEA]; GO_process: GO:0048309 - endoplasmic reticulum inheritance [Evidence IGI] [PMID 19665976]; GO_process: GO:0016320 - endoplasmic reticulum membrane fusion [Evidence IDA,IGI,IMP] [PMID 22508509]; GO_process: GO:0007029 - endoplasmic reticulum organization [Evidence IEA]; GO_process: GO:0007029 - endoplasmic reticulum organization [Evidence IGI,IGI] [PMID 19665976]; GO_process: GO:0007029 - endoplasmic reticulum organization [Evidence IGI] [PMID 22508509]; GO_process: GO:0061024 - membrane organization [Evidence IGI] [PMID 12427979]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0006950 - response to stress [Evidence IEA]; dynamin-like GTPase SEY1 1547094 SEY1 30036295 SEY1 Sugiyamaella lignohabitans dynamin-like GTPase SEY1 XP_018733858.1 1544617 R 796027 CDS AWJ20_4191 30036296 join(1547054..1547227,1548541..1551624) C 1 NC_031671.1 Plasma membrane hypothetical protein; truncation and overexpression suppresses lethality of G-alpha protein deficiency; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 7592711]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0007165 - signal transduction [Evidence IMP] [PMID 7592711]; Syg1p 1551624 SYG1 30036296 SYG1 Sugiyamaella lignohabitans Syg1p XP_018733859.1 1547054 D 796027 CDS AWJ20_4192 30036297 complement(1551661..1553379) C 1 NC_031671.1 top hit is XP_007344833.1 originated in Auricularia delicata TFB-10046 SS5; beta-glucosidase 1553379 BGL7 30036297 BGL7 Sugiyamaella lignohabitans beta-glucosidase XP_018733860.1 1551661 R 796027 CDS AWJ20_4193 30036298 1553632..1554654 C 1 NC_031671.1 uncharacterized protein 1554654 30036298 AWJ20_4193 Sugiyamaella lignohabitans uncharacterized protein XP_018733861.1 1553632 D 796027 CDS AWJ20_4194 30036299 complement(1554707..1558006) C 1 NC_031671.1 Putative aminophospholipid translocase (flippase); involved in endocytosis and vacuolar biogenesis; localizes to endosomes and the Golgi aparatus; GO_component: GO:0030137 - COPI-coated vesicle [Evidence IDA] [PMID 14562095]; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0005794 - Golgi apparatus [Evidence IDA] [PMID 15314152]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA]; GO_component: GO:0000139 - Golgi membrane [Evidence IDA] [PMID 12960419]; GO_component: GO:0005768 - endosome [Evidence IEA]; GO_component: GO:0005768 - endosome [Evidence IDA] [PMID 15314152]; GO_component: GO:0010008 - endosome membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0015662 - ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism [Evidence ISS] [PMID 9224683]; GO_function: GO:0019829 - cation-transporting ATPase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0000287 - magnesium ion binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_function: GO:0004012 - phospholipid-translocating ATPase activity [Evidence IEA,IEA]; GO_function: GO:0004012 - phospholipid-translocating ATPase activity [Evidence ISS] [PMID 12221123]; GO_process: GO:0006812 - cation transport [Evidence IEA]; GO_process: GO:0006897 - endocytosis [Evidence IMP] [PMID 15314152]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0045332 - phospholipid translocation [Evidence IEA,IEA]; GO_process: GO:0015914 - phospholipid transport [Evidence IEA]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006890 - retrograde vesicle-mediated transport, Golgi to ER [Evidence IMP] [PMID 12960419]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0007033 - vacuole organization [Evidence IMP] [PMID 15314152]; putative aminophospholipid-translocating P4-type ATPase NEO1 1558006 NEO1 30036299 NEO1 Sugiyamaella lignohabitans putative aminophospholipid-translocating P4-type ATPase NEO1 XP_018733862.1 1554707 R 796027 CDS AWJ20_4195 30036300 1558693..1559688 C 1 NC_031671.1 Subunit of the RNA polymerase II mediator complex; associates with core polymerase subunits to form the RNA polymerase II holoenzyme; essential for transcriptional regulation; GO_component: GO:0070847 - core mediator complex [Evidence IDA] [PMID 9891034]; GO_component: GO:0016592 - mediator complex [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0001104 - RNA polymerase II transcription cofactor activity [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence IEA]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IDA] [PMID 9420330]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Med4p 1559688 MED4 30036300 MED4 Sugiyamaella lignohabitans Med4p XP_018733863.1 1558693 D 796027 CDS AWJ20_4196 30036301 1560132..1560809 C 1 NC_031671.1 uncharacterized protein 1560809 30036301 AWJ20_4196 Sugiyamaella lignohabitans uncharacterized protein XP_018733864.1 1560132 D 796027 CDS AWJ20_4197 30036302 complement(1561016..1561906) C 1 NC_031671.1 uncharacterized protein 1561906 30036302 AWJ20_4197 Sugiyamaella lignohabitans uncharacterized protein XP_018733865.1 1561016 R 796027 CDS AWJ20_4198 30036303 complement(1563974..1564591) C 1 NC_031671.1 Essential component of the TIM23 complex; involved in protein import into mitochondrial matrix and inner membrane; with Tim17p, contributes to architecture and function of the import channel; TIM23 complex is short for the translocase of the inner mitochondrial membrane; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005744 - mitochondrial inner membrane presequence translocase complex [Evidence IEA]; GO_component: GO:0005744 - mitochondrial inner membrane presequence translocase complex [Evidence IPI] [PMID 7600576]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 11914276]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0015450 - P-P-bond-hydrolysis-driven protein transmembrane transporter activity [Evidence IEA]; GO_function: GO:0030943 - mitochondrion targeting sequence binding [Evidence IDA,IMP] [PMID 8858146]; GO_function: GO:0015266 - protein channel activity [Evidence IDA] [PMID 11713477]; GO_process: GO:0006886 - intracellular protein transport [Evidence IEA]; GO_process: GO:0030150 - protein import into mitochondrial matrix [Evidence IMP] [PMID 10830167]; GO_process: GO:0030150 - protein import into mitochondrial matrix [Evidence IMP] [PMID 7600576]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; protein transporter TIM23 1564591 TIM23 30036303 TIM23 Sugiyamaella lignohabitans protein transporter TIM23 XP_018733866.1 1563974 R 796027 CDS AWJ20_4199 30036304 complement(1565329..1567344) C 1 NC_031671.1 Gamma-glutamyltranspeptidase; major glutathione-degrading enzyme; involved in detoxification of electrophilic xenobiotics; expression induced mainly by nitrogen starvation; GO_component: GO:0000324 - fungal-type vacuole [Evidence IDA] [PMID 6143574]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0003840 - gamma-glutamyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0003840 - gamma-glutamyltransferase activity [Evidence IMP] [PMID 11672438]; GO_function: GO:0036374 - glutathione hydrolase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016746 - transferase activity, transferring acyl groups [Evidence IEA]; GO_process: GO:0006751 - glutathione catabolic process [Evidence IMP] [PMID 11672438]; GO_process: GO:0006749 - glutathione metabolic process [Evidence IEA,IEA]; GO_process: GO:0006508 - proteolysis [Evidence IEA]; GO_process: GO:0006805 - xenobiotic metabolic process [Evidence IMP] [PMID 16857395]; gamma-glutamyltransferase 1567344 ECM38 30036304 ECM38 Sugiyamaella lignohabitans gamma-glutamyltransferase XP_018733867.1 1565329 R 796027 CDS AWJ20_4200 30036307 complement(1568266..1574097) C 1 NC_031671.1 Catalytic subunit of 1,3-beta-D-glucan synthase; functionally redundant with alternate catalytic subunit Gsc2p; binds to regulatory subunit Rho1p; involved in cell wall synthesis and maintenance; localizes to sites of cell wall remodeling; FKS1 has a paralog, GSC2, that arose from the whole genome duplication; GO_component: GO:0000148 - 1,3-beta-D-glucan synthase complex [Evidence IEA]; GO_component: GO:0000148 - 1,3-beta-D-glucan synthase complex [Evidence IDA] [PMID 7983071]; GO_component: GO:0030479 - actin cortical patch [Evidence IDA] [PMID 11856368]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 11856368]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 8602515]; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 11856368]; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 8602515]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 11856368]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 17507646]; GO_function: GO:0003843 - 1,3-beta-D-glucan synthase activity [Evidence IEA,IEA]; GO_function: GO:0003843 - 1,3-beta-D-glucan synthase activity [Evidence IDA,IMP] [PMID 7528927]; GO_function: GO:0003843 - 1,3-beta-D-glucan synthase activity [Evidence IDA] [PMID 7649185]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA]; GO_process: GO:0006075 - (1->3)-beta-D-glucan biosynthetic process [Evidence IEA]; GO_process: GO:0006075 - (1->3)-beta-D-glucan biosynthetic process [Evidence IDA,IMP] [PMID 7528927]; GO_process: GO:0045807 - positive regulation of endocytosis [Evidence IMP] [PMID 14593073]; GO_process: GO:0008360 - regulation of cell shape [Evidence IEA]; GO_process: GO:0008361 - regulation of cell size [Evidence IMP] [PMID 17302939]; 1,3-beta-D-glucan synthase 1574097 FKS1 30036307 FKS1 Sugiyamaella lignohabitans 1,3-beta-D-glucan synthase XP_018733868.1 1568266 R 796027 CDS AWJ20_4201 30036308 1577995..1579653 C 1 NC_031671.1 Beta-1,3-glucanosyltransferase; required for cell wall assembly and also has a role in transcriptional silencing; localizes to cell surface via a glycosylphosphatidylinositol (GPI) anchor; also found at nuclear periphery; genetic interactions with histone H3 lysine acetyltransferases GCN5 and SAS3 indicate previously unsuspected functions for Gas1 in DNA damage response and cell cycle regulation; GO_component: GO:0030134 - ER to Golgi transport vesicle [Evidence IDA] [PMID 18462190]; GO_component: GO:0031225 - anchored component of membrane [Evidence IEA]; GO_component: GO:0005618 - cell wall [Evidence IEA,IEA]; GO_component: GO:0005621 - cellular bud scar [Evidence IDA] [PMID 19793924]; GO_component: GO:0005576 - extracellular region [Evidence IEA]; GO_component: GO:0009277 - fungal-type cell wall [Evidence IDA] [PMID 15781460]; GO_component: GO:0009277 - fungal-type cell wall [Evidence IDA] [PMID 19793924]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0045121 - membrane raft [Evidence IDA] [PMID 10716729]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0034399 - nuclear periphery [Evidence IDA] [PMID 19541632]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 16622836]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 1824714]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 19793924]; GO_component: GO:0000936 - primary cell septum [Evidence IDA] [PMID 19793924]; GO_function: GO:0042124 - 1,3-beta-glucanosyltransferase activity [Evidence IDA] [PMID 10809732]; GO_function: GO:0042124 - 1,3-beta-glucanosyltransferase activity [Evidence IDA] [PMID 15355340]; GO_function: GO:0042124 - 1,3-beta-glucanosyltransferase activity [Evidence IDA] [PMID 17397106]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0005975 - carbohydrate metabolic process [Evidence IEA]; GO_process: GO:0006342 - chromatin silencing [Evidence IMP,IPI] [PMID 19541632]; GO_process: GO:0030447 - filamentous growth [Evidence IMP] [PMID 15645503]; GO_process: GO:0031505 - fungal-type cell wall organization [Evidence IGI] [PMID 16986442]; GO_process: GO:0031505 - fungal-type cell wall organization [Evidence IMP] [PMID 9515908]; 1,3-beta-glucanosyltransferase GAS1 1579653 GAS1 30036308 GAS1 Sugiyamaella lignohabitans 1,3-beta-glucanosyltransferase GAS1 XP_018733869.1 1577995 D 796027 CDS AWJ20_4202 30036309 complement(1580570..1581457) C 1 NC_031671.1 Protein PXR1 1581457 30036309 AWJ20_4202 Sugiyamaella lignohabitans Protein PXR1 XP_018733870.1 1580570 R 796027 CDS AWJ20_4203 30036310 complement(join(1581844..1584915,1585252..1585425)) C 1 NC_031671.1 Karyopherin/importin that interacts with the nuclear pore complex; acts as the nuclear import receptor for specific proteins, including Pdr1p, Yap1p, Ste12p, and Aft1p; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 9238021]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9238021]; GO_function: GO:0008139 - nuclear localization sequence binding [Evidence IDA] [PMID 11694505]; GO_function: GO:0008565 - protein transporter activity [Evidence IMP,IPI] [PMID 11274141]; GO_process: GO:0006406 - mRNA export from nucleus [Evidence IGI] [PMID 9238021]; GO_process: GO:0006606 - protein import into nucleus [Evidence IMP] [PMID 16651379]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0007088 - regulation of mitosis [Evidence IMP] [PMID 14697200]; GO_process: GO:0060188 - regulation of protein desumoylation [Evidence IMP,IPI] [PMID 17403926]; GO_process: GO:0006810 - transport [Evidence IEA]; Pse1p 1585425 PSE1 30036310 PSE1 Sugiyamaella lignohabitans Pse1p XP_018733871.1 1581844 R 796027 CDS AWJ20_4204 30036311 complement(1592737..1593171) C 1 NC_031671.1 Calcineurin B; regulatory subunit of calcineurin, a Ca++/calmodulin-regulated type 2B protein phosphatase which regulates Crz1p (stress-response transcription factor); other calcineurin subunit encoded by CNA1 and/or CMP1; regulates function of Aly1p alpha-arrestin; myristoylation by Nmt1p reduces calcineurin activity in response to submaximal Ca signals, is needed to prevent constitutive phosphatase activity; protein abundance increases in response to DNA replication stress; GO_component: GO:0005955 - calcineurin complex [Evidence IPI] [PMID 10887154]; GO_component: GO:0005955 - calcineurin complex [Evidence IDA] [PMID 1321337]; GO_function: GO:0005509 - calcium ion binding [Evidence IEA]; GO_function: GO:0005509 - calcium ion binding [Evidence ISS] [PMID 11015619]; GO_function: GO:0004723 - calcium-dependent protein serine/threonine phosphatase activity [Evidence IDA,ISS] [PMID 1321337]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_process: GO:0000754 - adaptation of signaling pathway by response to pheromone involved in conjugation with cellular fusion [Evidence IMP] [PMID 1321337]; GO_process: GO:0006873 - cellular ion homeostasis [Evidence IMP] [PMID 8798496]; GO_process: GO:0031505 - fungal-type cell wall organization [Evidence IGI,IMP] [PMID 7530227]; calcineurin regulatory subunit B 1593171 CNB1 30036311 CNB1 Sugiyamaella lignohabitans calcineurin regulatory subunit B XP_018733872.1 1592737 R 796027 CDS AWJ20_4205 30036312 complement(1596925..1597236) C 1 NC_031671.1 Histone H4; core histone protein required for chromatin assembly and chromosome function; one of two identical histone proteins (see also HHF2); contributes to telomeric silencing; N-terminal domain involved in maintaining genomic integrity; GO_component: GO:0005694 - chromosome [Evidence IEA,IEA]; GO_component: GO:0000788 - nuclear nucleosome [Evidence TAS] [PMID 2275823]; GO_component: GO:0000786 - nucleosome [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0031298 - replication fork protection complex [Evidence IDA] [PMID 16531994]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0003677 - DNA binding [Evidence TAS] [PMID 2275823]; GO_function: GO:0046982 - protein heterodimerization activity [Evidence IEA]; GO_process: GO:0006333 - chromatin assembly or disassembly [Evidence TAS] [PMID 2275823]; GO_process: GO:0034729 - histone H3-K79 methylation [Evidence IMP] [PMID 18158898]; GO_process: GO:0006334 - nucleosome assembly [Evidence IEA]; GO_process: GO:0043935 - sexual sporulation resulting in formation of a cellular spore [Evidence IMP] [PMID 20713519]; GO_process: GO:0061587 - transfer RNA gene-mediated silencing [Evidence IMP] [PMID 23707796]; histone H4 1597236 HHF2 30036312 HHF2 Sugiyamaella lignohabitans histone H4 XP_018733873.1 1596925 R 796027 CDS AWJ20_4206 30036313 1599228..1601102 C 1 NC_031671.1 ubiquitin-specific protease UBP8 1601102 UBP8 30036313 UBP8 Sugiyamaella lignohabitans ubiquitin-specific protease UBP8 XP_018733874.1 1599228 D 796027 CDS AWJ20_4207 30036314 1602457..1603854 C 1 NC_031671.1 uncharacterized protein 1603854 30036314 AWJ20_4207 Sugiyamaella lignohabitans uncharacterized protein XP_018733875.1 1602457 D 796027 CDS AWJ20_4208 30036315 complement(1605309..1606484) C 1 NC_031671.1 uncharacterized protein 1606484 30036315 AWJ20_4208 Sugiyamaella lignohabitans uncharacterized protein XP_018733876.1 1605309 R 796027 CDS AWJ20_4209 30036316 1607828..1608829 C 1 NC_031671.1 Deubiquitylation enzyme that binds to the chaperone-ATPase Cdc48p; may contribute to regulation of protein degradation by deubiquitylating substrates that have been ubiquitylated by Ufd2p; member of the Ovarian Tumor (OTU) family; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0008234 - cysteine-type peptidase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA,IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_function: GO:0004843 - ubiquitin-specific protease activity [Evidence IDA] [PMID 16427015]; GO_process: GO:0016579 - protein deubiquitination [Evidence IDA] [PMID 16427015]; GO_process: GO:0006508 - proteolysis [Evidence IEA]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IMP] [PMID 15755922]; Otu1p 1608829 OTU1 30036316 OTU1 Sugiyamaella lignohabitans Otu1p XP_018733877.1 1607828 D 796027 CDS AWJ20_4210 30036318 complement(1609145..1609600) C 1 NC_031671.1 C2H2-type zinc finger protein required for ribosome assembly; shuttling factor which associates with pre-60S particles in the nucleus, accompanying them to the cytoplasm; cytoplasmic dissociation of Bud20p requires Drg1p; N-terminus harbors a nuclear localization signal (NLS) and a nuclear export signal (NES); cytoplasmic Bud20p is reimported by Kap123-dependent pathway; involved in bud-site selection; diploid mutants display a random budding pattern; similar to human ZNF593; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 23045392]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 23212245]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11452010]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 23212245]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 23045392]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA,IDA] [PMID 23212245]; GO_function: GO:0046872 - metal ion binding [Evidence IEA,IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0043023 - ribosomal large subunit binding [Evidence IDA] [PMID 23045392]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0000282 - cellular bud site selection [Evidence IMP] [PMID 11452010]; GO_process: GO:0000055 - ribosomal large subunit export from nucleus [Evidence IGI,IMP] [PMID 23045392]; GO_process: GO:0000055 - ribosomal large subunit export from nucleus [Evidence IGI,IMP] [PMID 23212245]; Bud20p 1609600 BUD20 30036318 BUD20 Sugiyamaella lignohabitans Bud20p XP_018733878.1 1609145 R 796027 CDS AWJ20_4211 30036319 complement(1611582..1612292) C 1 NC_031671.1 Protein that interacts with the CCT complex to stimulate actin folding; has similarity to phosducins; null mutant lethality is complemented by mouse phosducin-like protein MgcPhLP; CCT is short for chaperonin containing TCP-1; essential gene; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IPI] [PMID 10749875]; GO_function: GO:0031683 - G-protein beta/gamma-subunit complex binding [Evidence IDA] [PMID 10749875]; GO_function: GO:0003779 - actin binding [Evidence IDA,IMP] [PMID 19501098]; GO_process: GO:0009968 - negative regulation of signal transduction [Evidence IEA]; GO_process: GO:0007329 - positive regulation of transcription from RNA polymerase II promoter by pheromones [Evidence IMP,IPI] [PMID 10749875]; GO_process: GO:0006457 - protein folding [Evidence IDA] [PMID 19501098]; GO_process: GO:0019236 - response to pheromone [Evidence IEA]; Plp2p 1612292 PLP2 30036319 PLP2 Sugiyamaella lignohabitans Plp2p XP_018733879.1 1611582 R 796027 CDS AWJ20_4212 30036320 1613376..1615985 C 1 NC_031671.1 Putative transcription factor SEF1 1615985 LEU3 30036320 LEU3 Sugiyamaella lignohabitans Putative transcription factor SEF1 XP_018733880.1 1613376 D 796027 CDS AWJ20_4213 30036321 1622359..1623210 C 1 NC_031671.1 Spore-specific water channel; mediates the transport of water across cell membranes, developmentally controlled; may play a role in spore maturation, probably by allowing water outflow, may be involved in freeze tolerance; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 10092523]; GO_function: GO:0005215 - transporter activity [Evidence IEA]; GO_function: GO:0015250 - water channel activity [Evidence IGI,IMP,ISS] [PMID 9765289]; GO_process: GO:0030437 - ascospore formation [Evidence IMP] [PMID 15583134]; GO_process: GO:0006810 - transport [Evidence IEA,IEA,IEA]; GO_process: GO:0006833 - water transport [Evidence IMP] [PMID 9765289]; Aqy1p 1623210 AQY1 30036321 AQY1 Sugiyamaella lignohabitans Aqy1p XP_018733881.1 1622359 D 796027 CDS AWJ20_4214 30036322 1623955..1624545 C 1 NC_031671.1 uncharacterized protein 1624545 30036322 AWJ20_4214 Sugiyamaella lignohabitans uncharacterized protein XP_018733882.1 1623955 D 796027 CDS AWJ20_4216 30036324 1628542..1630761 C 1 NC_031671.1 DNA-binding transcription factor CRZ1 1630761 CRZ1 30036324 CRZ1 Sugiyamaella lignohabitans DNA-binding transcription factor CRZ1 XP_018733883.1 1628542 D 796027 CDS AWJ20_4217 30036325 complement(1630997..1632346) C 1 NC_031671.1 S-adenosylmethionine-dependent methyltransferase; required for wybutosine formation in phenylalanine-accepting tRNA; member of the seven beta-strand family; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity [Evidence IEA]; GO_function: GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity [Evidence ISS] [PMID 12872006]; GO_function: GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity [Evidence IDA] [PMID 16005430]; GO_function: GO:0008168 - methyltransferase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA,IEA]; GO_function: GO:0016765 - transferase activity, transferring alkyl or aryl (other than methyl) groups [Evidence IDA] [PMID 16642040]; GO_process: GO:0032259 - methylation [Evidence IEA]; GO_process: GO:0030488 - tRNA methylation [Evidence IDA] [PMID 16005430]; GO_process: GO:0008033 - tRNA processing [Evidence IEA]; GO_process: GO:0031591 - wybutosine biosynthetic process [Evidence IEA]; GO_process: GO:0031591 - wybutosine biosynthetic process [Evidence IMP] [PMID 16642040]; GO_process: GO:0031591 - wybutosine biosynthetic process [Evidence IMP] [PMID 17150819]; Trm12p 1632346 TRM12 30036325 TRM12 Sugiyamaella lignohabitans Trm12p XP_018733884.1 1630997 R 796027 CDS AWJ20_4218 30036326 complement(1639114..1640703) C 1 NC_031671.1 Nuclear protein that negatively regulates pseudohyphal differentiation; plays a regulatory role in the cyclic AMP (cAMP)-dependent protein kinase (PKA) signal transduction pathway; relocalizes to the cytosol in response to hypoxia; SOK2 has a paralog, PHD1, that arose from the whole genome duplication; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 22932476]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22932476]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19111667]; GO_function: GO:0003700 - sequence-specific DNA binding transcription factor activity [Evidence IEA]; GO_function: GO:0003700 - sequence-specific DNA binding transcription factor activity [Evidence ISS] [PMID 8524252]; GO_process: GO:0007124 - pseudohyphal growth [Evidence IMP] [PMID 11046133]; GO_process: GO:0007124 - pseudohyphal growth [Evidence IMP] [PMID 8524252]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA,IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Sok2p 1640703 SOK2 30036326 SOK2 Sugiyamaella lignohabitans Sok2p XP_018733885.1 1639114 R 796027 CDS AWJ20_4219 30036327 complement(1646809..1648131) C 1 NC_031671.1 Protein involved in transcription; interacts with RNA polymerase II subunits Rpb2p, Rpb3, and Rpb11p; has similarity to human RPAP1; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14690591]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IMP] [PMID 15282305]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Rba50p 1648131 RBA50 30036327 RBA50 Sugiyamaella lignohabitans Rba50p XP_018733886.1 1646809 R 796027 CDS AWJ20_4220 30036329 1651905..1653509 C 1 NC_031671.1 uncharacterized protein 1653509 30036329 AWJ20_4220 Sugiyamaella lignohabitans uncharacterized protein XP_018733887.1 1651905 D 796027 CDS AWJ20_4221 30036330 1657305..1658654 C 1 NC_031671.1 uncharacterized protein 1658654 30036330 AWJ20_4221 Sugiyamaella lignohabitans uncharacterized protein XP_018733888.1 1657305 D 796027 CDS AWJ20_4222 30036331 complement(1658853..1660541) C 1 NC_031671.1 Subunit of the origin recognition complex (ORC); ORC directs DNA replication by binding to replication origins and is also involved in transcriptional silencing; interacts with Spp1p and with trimethylated histone H3; phosphorylated by Cdc28p; GO_component: GO:0031261 - DNA replication preinitiation complex [Evidence IDA] [PMID 9554851]; GO_component: GO:0005664 - nuclear origin of replication recognition complex [Evidence IDA,IMP] [PMID 9372948]; GO_component: GO:0005656 - nuclear pre-replicative complex [Evidence IDA] [PMID 16824194]; GO_component: GO:0005656 - nuclear pre-replicative complex [Evidence IDA] [PMID 9335335]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0000808 - origin recognition complex [Evidence IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0003688 - DNA replication origin binding [Evidence IDA] [PMID 16824194]; GO_function: GO:0003688 - DNA replication origin binding [Evidence IDA] [PMID 9288745]; GO_function: GO:0003682 - chromatin binding [Evidence IDA] [PMID 9159120]; GO_function: GO:0003682 - chromatin binding [Evidence IDA] [PMID 9288745]; GO_process: GO:0006260 - DNA replication [Evidence IEA,IEA]; GO_process: GO:0006270 - DNA replication initiation [Evidence IMP] [PMID 16716188]; GO_process: GO:0006270 - DNA replication initiation [Evidence IGI,IMP] [PMID 7579692]; GO_process: GO:0030466 - chromatin silencing at silent mating-type cassette [Evidence IDA] [PMID 12897051]; GO_process: GO:0006348 - chromatin silencing at telomere [Evidence IMP] [PMID 16980387]; GO_process: GO:0051568 - histone H3-K4 methylation [Evidence IMP] [PMID 18845545]; GO_process: GO:0006267 - pre-replicative complex assembly involved in nuclear cell cycle DNA replication [Evidence IDA] [PMID 16824194]; origin recognition complex subunit 2 1660541 ORC2 30036331 ORC2 Sugiyamaella lignohabitans origin recognition complex subunit 2 XP_018733889.1 1658853 R 796027 CDS AWJ20_4223 30036332 complement(1661453..1662412) C 1 NC_031671.1 Thiazole synthase; abundant protein involved in the formation of the thiazole moiety of thiamine during thiamine biosynthesis; acts more as a co-substrate rather than an enzyme by providing the sulphur source for thiazole formation; undergoes a single turnover only; required for mitochondrial genome stability in response to DNA damaging agents; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence IEA]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 15544818]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 16850348]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0008198 - ferrous iron binding [Evidence IDA] [PMID 22031445]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_process: GO:0000002 - mitochondrial genome maintenance [Evidence IMP] [PMID 9367751]; GO_process: GO:0006950 - response to stress [Evidence IEA]; GO_process: GO:0009228 - thiamine biosynthetic process [Evidence IEA,IEA,IEA]; GO_process: GO:0009228 - thiamine biosynthetic process [Evidence IMP] [PMID 7941734]; GO_process: GO:0052837 - thiazole biosynthetic process [Evidence IEA]; GO_process: GO:0052837 - thiazole biosynthetic process [Evidence IDA] [PMID 22031445]; thiamine thiazole synthase 1662412 THI4 30036332 THI4 Sugiyamaella lignohabitans thiamine thiazole synthase XP_018733890.1 1661453 R 796027 CDS AWJ20_4224 30036333 complement(1663753..1665657) C 1 NC_031671.1 UV radiation resistance-associated gene protein 1665657 30036333 AWJ20_4224 Sugiyamaella lignohabitans UV radiation resistance-associated gene protein XP_018733891.1 1663753 R 796027 CDS AWJ20_4225 30036334 1668113..1668934 C 1 NC_031671.1 uncharacterized protein 1668934 30036334 AWJ20_4225 Sugiyamaella lignohabitans uncharacterized protein XP_018733892.1 1668113 D 796027 CDS AWJ20_4226 30036335 complement(1672813..1676532) C 1 NC_031671.1 Subunit of the multiprotein cohesin complex; essential protein involved in chromosome segregation and in double-strand DNA break repair; SMC chromosomal ATPase family member, binds DNA with a preference for DNA with secondary structure; GO_component: GO:0005694 - chromosome [Evidence IEA,IEA,IEA]; GO_component: GO:0008278 - cohesin complex [Evidence IEA]; GO_component: GO:0034990 - nuclear mitotic cohesin complex [Evidence IDA] [PMID 9990856]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_function: GO:0003680 - AT DNA binding [Evidence IDA] [PMID 9727028]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016887 - ATPase activity [Evidence ISS] [PMID 7929577]; GO_function: GO:0000217 - DNA secondary structure binding [Evidence IDA] [PMID 9727028]; GO_function: GO:0003682 - chromatin binding [Evidence IEA]; GO_function: GO:0003690 - double-stranded DNA binding [Evidence IDA] [PMID 9727028]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0046982 - protein heterodimerization activity [Evidence IEA]; GO_process: GO:0006310 - DNA recombination [Evidence IEA]; GO_process: GO:0006281 - DNA repair [Evidence IEA]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0051276 - chromosome organization [Evidence IEA]; GO_process: GO:0006302 - double-strand break repair [Evidence IMP] [PMID 11448778]; GO_process: GO:0006302 - double-strand break repair [Evidence IMP] [PMID 15280507]; GO_process: GO:0007067 - mitotic nuclear division [Evidence IEA]; GO_process: GO:0007064 - mitotic sister chromatid cohesion [Evidence IEA]; GO_process: GO:0007064 - mitotic sister chromatid cohesion [Evidence IGI] [PMID 9335333]; GO_process: GO:0000070 - mitotic sister chromatid segregation [Evidence IMP] [PMID 8276886]; cohesin subunit SMC1 1676532 SMC1 30036335 SMC1 Sugiyamaella lignohabitans cohesin subunit SMC1 XP_018733893.1 1672813 R 796027 CDS AWJ20_4227 30036336 1679683..1680840 C 1 NC_031671.1 Fe(II)-dependent sulfonate/alpha-ketoglutarate dioxygenase; involved in sulfonate catabolism for use as a sulfur source; contains sequence that resembles a J domain (typified by the E. coli DnaJ protein); induced by sulphur starvation; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0051213 - dioxygenase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0000907 - sulfonate dioxygenase activity [Evidence IDA] [PMID 10482536]; GO_process: GO:0046306 - alkanesulfonate catabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0044273 - sulfur compound catabolic process [Evidence IMP] [PMID 10482536]; Jlp1p 1680840 JLP1 30036336 JLP1 Sugiyamaella lignohabitans Jlp1p XP_018733894.1 1679683 D 796027 CDS AWJ20_4228 30036337 complement(1680897..1682660) C 1 NC_031671.1 Phospholipase B (lysophospholipase) involved in lipid metabolism; hydrolyzes phosphatidylinositol and phosphatidylserine and displays transacylase activity in vitro; PLB3 has a paralog, PLB1, that arose from the whole genome duplication; GO_component: GO:0031225 - anchored component of membrane [Evidence IEA]; GO_component: GO:0005576 - extracellular region [Evidence IDA] [PMID 10497163]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence ISS] [PMID 10497163]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0004622 - lysophospholipase activity [Evidence IEA]; GO_function: GO:0004622 - lysophospholipase activity [Evidence IMP,ISS] [PMID 10497163]; GO_function: GO:0004620 - phospholipase activity [Evidence IEA]; GO_process: GO:0016042 - lipid catabolic process [Evidence IEA]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0046488 - phosphatidylinositol metabolic process [Evidence IDA,IMP] [PMID 10497163]; GO_process: GO:0006660 - phosphatidylserine catabolic process [Evidence IDA,IMP] [PMID 10497163]; GO_process: GO:0009395 - phospholipid catabolic process [Evidence IEA]; Plb3p 1682660 PLB3 30036337 PLB3 Sugiyamaella lignohabitans Plb3p XP_018733895.1 1680897 R 796027 CDS AWJ20_4229 30036338 complement(1683109..1685295) C 1 NC_031671.1 Transcription factor; activated by proteolytic processing in response to signals from the SPS sensor system for external amino acids; activates transcription of amino acid permease genes; STP2 has a paralog, STP1, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 21127045]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IPI] [PMID 10648791]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 21127045]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0000978 - RNA polymerase II core promoter proximal region sequence-specific DNA binding [Evidence IDA] [PMID 11212916]; GO_function: GO:0001077 - RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription [Evidence IDA,IMP] [PMID 10648791]; GO_function: GO:0001077 - RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription [Evidence IDA,IMP] [PMID 19906648]; GO_function: GO:0046872 - metal ion binding [Evidence IEA,IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19158363]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IGI,IMP,ISS] [PMID 10648791]; Stp2p 1685295 STP2 30036338 STP2 Sugiyamaella lignohabitans Stp2p XP_018733896.1 1683109 R 796027 CDS AWJ20_4230 30036340 complement(1690464..1692017) C 1 NC_031671.1 Putative nucleotide sugar transporter; has similarity to Vrg4p; GO_component: GO:0030137 - COPI-coated vesicle [Evidence IDA] [PMID 14562095]; GO_component: GO:0030663 - COPI-coated vesicle membrane [Evidence IEA]; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA]; GO_component: GO:0031410 - cytoplasmic vesicle [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0005338 - nucleotide-sugar transmembrane transporter activity [Evidence ISS] [PMID 9395539]; GO_process: GO:0015786 - UDP-glucose transport [Evidence IMP] [PMID 18693752]; GO_process: GO:0008643 - carbohydrate transport [Evidence IEA]; GO_process: GO:0015780 - nucleotide-sugar transport [Evidence ISS] [PMID 9395539]; GO_process: GO:0006810 - transport [Evidence IEA]; Ymd8p 1692017 YMD8 30036340 YMD8 Sugiyamaella lignohabitans Ymd8p XP_018733897.1 1690464 R 796027 CDS AWJ20_4231 30036341 1693232..1695415 C 1 NC_031671.1 Putative GPI-anchored aspartic protease; member of the yapsin family of proteases involved in cell wall growth and maintenance; located in the cytoplasm and endoplasmic reticulum; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 14562095]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0004190 - aspartic-type endopeptidase activity [Evidence IEA]; GO_function: GO:0004190 - aspartic-type endopeptidase activity [Evidence ISS] [PMID 10191273]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_process: GO:0031505 - fungal-type cell wall organization [Evidence IGI] [PMID 16087741]; GO_process: GO:0006508 - proteolysis [Evidence IEA,IEA]; Yps7p 1695415 YPS7 30036341 YPS7 Sugiyamaella lignohabitans Yps7p XP_018733898.1 1693232 D 796027 CDS AWJ20_4232 30036342 complement(1695722..1696063) C 1 NC_031671.1 uncharacterized protein 1696063 30036342 AWJ20_4232 Sugiyamaella lignohabitans uncharacterized protein XP_018733899.1 1695722 R 796027 CDS AWJ20_4233 30036343 1700817..1702451 C 1 NC_031671.1 GABA (gamma-aminobutyrate) permease; serves as a GABA transport protein involved in the utilization of GABA as a nitrogen source; catalyzes the transport of putrescine and delta-aminolevulinic acid (ALA); localized to the vacuolar membrane; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 14985124]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0015171 - amino acid transmembrane transporter activity [Evidence IEA]; GO_function: GO:0015495 - gamma-aminobutyric acid:proton symporter activity [Evidence IGI] [PMID 8455553]; GO_function: GO:0015489 - putrescine transmembrane transporter activity [Evidence IGI] [PMID 14985124]; GO_process: GO:0003333 - amino acid transmembrane transport [Evidence IEA]; GO_process: GO:0006865 - amino acid transport [Evidence IEA]; GO_process: GO:0015812 - gamma-aminobutyric acid transport [Evidence IGI] [PMID 14985124]; GO_process: GO:0015812 - gamma-aminobutyric acid transport [Evidence IEP,IGI] [PMID 8455553]; GO_process: GO:0015847 - putrescine transport [Evidence IGI] [PMID 14985124]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IGI] [PMID 8455553]; GO_process: GO:0006810 - transport [Evidence IEA]; Uga4p 1702451 UGA4 30036343 UGA4 Sugiyamaella lignohabitans Uga4p XP_018733900.1 1700817 D 796027 CDS AWJ20_4234 30036344 complement(1702787..1705123) C 1 NC_031671.1 FAD transporter FLC2 1705123 FLC2 30036344 FLC2 Sugiyamaella lignohabitans FAD transporter FLC2 XP_018733901.1 1702787 R 796027 CDS AWJ20_4235 30036345 complement(1707353..1708639) C 1 NC_031671.1 L-ornithine transaminase (OTAse); catalyzes the second step of arginine degradation, expression is dually-regulated by allophanate induction and a specific arginine induction process; not nitrogen catabolite repression sensitive; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 205532]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0004587 - ornithine-oxo-acid transaminase activity [Evidence IEA]; GO_function: GO:0004587 - ornithine-oxo-acid transaminase activity [Evidence IMP] [PMID 3036506]; GO_function: GO:0030170 - pyridoxal phosphate binding [Evidence IEA]; GO_function: GO:0008483 - transaminase activity [Evidence IEA,IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0055129 - L-proline biosynthetic process [Evidence IEA]; GO_process: GO:0006527 - arginine catabolic process [Evidence NAS] [PMID 14263163]; GO_process: GO:0006527 - arginine catabolic process [Evidence IC] [PMID 3036506]; GO_process: GO:0006591 - ornithine metabolic process [Evidence IMP] [PMID 3036506]; ornithine-oxo-acid transaminase 1708639 CAR2 30036345 CAR2 Sugiyamaella lignohabitans ornithine-oxo-acid transaminase XP_018733902.1 1707353 R 796027 CDS AWJ20_4236 30036346 complement(1709771..1711237) C 1 NC_031671.1 uncharacterized protein 1711237 30036346 AWJ20_4236 Sugiyamaella lignohabitans uncharacterized protein XP_018733903.1 1709771 R 796027 CDS AWJ20_4237 30036347 1714370..1717405 C 1 NC_031671.1 GPI inositol deacylase of the endoplasmic reticulum (ER); negatively regulates COPII vesicle formation; prevents production of vesicles with defective subunits; required for proper discrimination between resident ER proteins and Golgi-bound cargo molecules; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 8862519]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016021 - integral component of membrane [Evidence ISS] [PMID 8862519]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016788 - hydrolase activity, acting on ester bonds [Evidence IEA]; GO_function: GO:0050185 - phosphatidylinositol deacylase activity [Evidence IGI] [PMID 14734546]; GO_process: GO:0006888 - ER to Golgi vesicle-mediated transport [Evidence IMP] [PMID 8862519]; GO_process: GO:0030433 - ER-associated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 11673477]; GO_process: GO:0006505 - GPI anchor metabolic process [Evidence IEA]; GO_process: GO:0006505 - GPI anchor metabolic process [Evidence IGI] [PMID 14734546]; GO_process: GO:0006886 - intracellular protein transport [Evidence IEA]; GO_process: GO:0006621 - protein retention in ER lumen [Evidence IMP] [PMID 8862519]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0016050 - vesicle organization [Evidence IGI,IMP] [PMID 8862519]; Bst1p 1717405 BST1 30036347 BST1 Sugiyamaella lignohabitans Bst1p XP_018733904.1 1714370 D 796027 CDS AWJ20_4238 30036348 complement(1718452..1720752) C 1 NC_031671.1 uncharacterized protein 1720752 30036348 AWJ20_4238 Sugiyamaella lignohabitans uncharacterized protein XP_018733905.1 1718452 R 796027 CDS AWJ20_4239 30036349 1725799..1729281 C 1 NC_031671.1 Histidine kinase osmosensor that regulates a MAP kinase cascade; transmembrane protein with an intracellular kinase domain that signals to Ypd1p and Ssk1p, thereby forming a phosphorelay system similar to bacterial two-component regulators; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0005887 - integral component of plasma membrane [Evidence IDA] [PMID 10198019]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 14665464]; GO_component: GO:0005886 - plasma membrane [Evidence ISS] [PMID 8808622]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0009927 - histidine phosphotransfer kinase activity [Evidence IDA,IMP] [PMID 12455952]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0005034 - osmosensor activity [Evidence IDA] [PMID 12821642]; GO_function: GO:0000156 - phosphorelay response regulator activity [Evidence IEA]; GO_function: GO:0000155 - phosphorelay sensor kinase activity [Evidence IEA]; GO_function: GO:0004673 - protein histidine kinase activity [Evidence IEA]; GO_function: GO:0004673 - protein histidine kinase activity [Evidence IDA] [PMID 8808622]; GO_function: GO:0004871 - signal transducer activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016772 - transferase activity, transferring phosphorus-containing groups [Evidence IEA]; GO_process: GO:0035556 - intracellular signal transduction [Evidence IEA]; GO_process: GO:0006469 - negative regulation of protein kinase activity [Evidence IGI,IMP] [PMID 9482735]; GO_process: GO:0007234 - osmosensory signaling via phosphorelay pathway [Evidence IDA] [PMID 8808622]; GO_process: GO:0018106 - peptidyl-histidine phosphorylation [Evidence IDA] [PMID 8808622]; GO_process: GO:0000160 - phosphorelay signal transduction system [Evidence IEA,IEA]; GO_process: GO:0016310 - phosphorylation [Evidence IEA,IEA]; GO_process: GO:0046777 - protein autophosphorylation [Evidence IDA] [PMID 8808622]; GO_process: GO:0007165 - signal transduction [Evidence IEA]; GO_process: GO:0023014 - signal transduction by phosphorylation [Evidence IEA]; Sln1p 1729281 SLN1 30036349 SLN1 Sugiyamaella lignohabitans Sln1p XP_018733906.1 1725799 D 796027 CDS AWJ20_4240 30036351 1730246..1731907 C 1 NC_031671.1 Plasma membrane transporter of the major facilitator superfamily; member of the 12-spanner drug:H(+) antiporter DHA1 family; involved in efflux of fluconazole, diazaborine, benomyl, methotrexate, and other drugs; expression induced in cells treated with the mycotoxin patulin; relocalizes from nucleus to plasma membrane upon DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 10903515]; GO_function: GO:0015238 - drug transmembrane transporter activity [Evidence IEA]; GO_function: GO:0015244 - fluconazole transporter activity [Evidence ISS] [PMID 9235926]; GO_process: GO:0006855 - drug transmembrane transport [Evidence IGI,IMP] [PMID 10572257]; GO_process: GO:0006855 - drug transmembrane transport [Evidence IGI] [PMID 9235926]; GO_process: GO:0015893 - drug transport [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence ISS] [PMID 9235926]; GO_process: GO:0006810 - transport [Evidence IEA]; Flr1p 1731907 FLR1 30036351 FLR1 Sugiyamaella lignohabitans Flr1p XP_018733907.1 1730246 D 796027 CDS AWJ20_4241 30036352 join(1732253..1732340,1732427..1733298) C 1 NC_031671.1 RNA-binding protein, G-patch type (predicted) 1733298 30036352 AWJ20_4241 Sugiyamaella lignohabitans RNA-binding protein, G-patch type (predicted) XP_018733908.1 1732253 D 796027 CDS AWJ20_4242 30036353 complement(1733361..1735283) C 1 NC_031671.1 Mitochondrial hypothetical protein involved in lipid homeostasis; integral membrane protein that localizes to the mitochondrial inner membrane; involved in mitochondrial morphology; non-essential gene which interacts genetically with MDM10, and other members of the ERMES complex; transcription is periodic during the metabolic cycle; homologous to human aarF domain containing kinase, ADCK1; GO_component: GO:0032592 - integral component of mitochondrial membrane [Evidence IDA] [PMID 23781023]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IDA] [PMID 23781023]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0016772 - transferase activity, transferring phosphorus-containing groups [Evidence IEA]; GO_process: GO:0055088 - lipid homeostasis [Evidence IGI] [PMID 23781023]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0007005 - mitochondrion organization [Evidence IGI,IMP] [PMID 23781023]; Mcp2p 1735283 MCP2 30036353 MCP2 Sugiyamaella lignohabitans Mcp2p XP_018733909.1 1733361 R 796027 CDS AWJ20_4243 30036354 1735835..1736410 C 1 NC_031671.1 Mannosyltransferase involved in N-linked protein glycosylation; member of the KRE2/MNT1 mannosyltransferase family; KTR2 has a paralog, YUR1, that arose from the whole genome duplication; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0005794 - Golgi apparatus [Evidence IDA] [PMID 8631921]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_function: GO:0000030 - mannosyltransferase activity [Evidence IEA]; GO_function: GO:0000030 - mannosyltransferase activity [Evidence IDA] [PMID 8631921]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA]; GO_process: GO:0000032 - cell wall mannoprotein biosynthetic process [Evidence IMP] [PMID 8631921]; GO_process: GO:0097502 - mannosylation [Evidence IEA]; GO_process: GO:0006487 - protein N-linked glycosylation [Evidence IMP] [PMID 8631921]; GO_process: GO:0006486 - protein glycosylation [Evidence IEA,IEA]; mannosyltransferase KTR2 1736410 KTR2 30036354 KTR2 Sugiyamaella lignohabitans mannosyltransferase KTR2 XP_018733910.1 1735835 D 796027 CDS AWJ20_4244 30036355 complement(1738238..1738528) C 1 NC_031671.1 RNA polymerase II subunit B32; forms two subunit dissociable complex with Rpb7p; the Rpb4p/Rpb7p subcomplex regulates cellular lifespan via an mRNA decay process; involved in recruitment of 3'-end processing factors to transcribing RNA polymerase II complex and in export of mRNA to cytoplasm under stress conditions; also involved in translation initiation; GO_component: GO:0005665 - DNA-directed RNA polymerase II, core complex [Evidence IDA] [PMID 1331084]; GO_component: GO:0005665 - DNA-directed RNA polymerase II, core complex [Evidence IDA] [PMID 2183013]; GO_component: GO:0005665 - DNA-directed RNA polymerase II, core complex [Evidence IDA] [PMID 2186966]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 12857861]; GO_component: GO:0000932 - cytoplasmic mRNA processing body [Evidence IEA]; GO_component: GO:0000932 - cytoplasmic mRNA processing body [Evidence IDA] [PMID 16357218]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 12857861]; GO_function: GO:0003899 - DNA-directed RNA polymerase activity [Evidence IEA,IEA]; GO_function: GO:0003968 - RNA-directed RNA polymerase activity [Evidence IDA] [PMID 18004386]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0003697 - single-stranded DNA binding [Evidence IDA] [PMID 11087726]; GO_function: GO:0003727 - single-stranded RNA binding [Evidence IDA] [PMID 11087726]; GO_function: GO:0031369 - translation initiation factor binding [Evidence IPI] [PMID 21074047]; GO_process: GO:0006281 - DNA repair [Evidence IEA]; GO_process: GO:0044237 - cellular metabolic process [Evidence IEA]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0031990 - mRNA export from nucleus in response to heat stress [Evidence IMP] [PMID 12857861]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0000288 - nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay [Evidence IMP] [PMID 16357218]; GO_process: GO:0045948 - positive regulation of translational initiation [Evidence IMP] [PMID 21074047]; GO_process: GO:0034402 - recruitment of 3'-end processing factors to RNA polymerase II holoenzyme complex [Evidence IMP] [PMID 18195044]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IMP] [PMID 11577101]; GO_process: GO:0006367 - transcription initiation from RNA polymerase II promoter [Evidence IDA] [PMID 11087726]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; DNA-directed RNA polymerase II subunit RPB4 1738528 RPB4 30036355 RPB4 Sugiyamaella lignohabitans DNA-directed RNA polymerase II subunit RPB4 XP_018733911.1 1738238 R 796027 CDS AWJ20_4245 30036356 join(1739532..1739534,1739864..1740014,1740279..1740448) C 1 NC_031671.1 uncharacterized protein 1740448 30036356 AWJ20_4245 Sugiyamaella lignohabitans uncharacterized protein XP_018733912.1 1739532 D 796027 CDS AWJ20_4246 30036357 complement(1740670..1741362) C 1 NC_031671.1 Nicotinamidase that converts nicotinamide to nicotinic acid; part of the NAD(+) salvage pathway; required for life span extension by calorie restriction; PNC1 expression responds to all known stimuli that extend replicative life span; protein increases in abundance and relative distribution to cytoplasmic foci decreases upon DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 12736687]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 12736687]; GO_component: GO:0005777 - peroxisome [Evidence IEA,IEA]; GO_component: GO:0005777 - peroxisome [Evidence IDA] [PMID 12736687]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0008936 - nicotinamidase activity [Evidence IEA]; GO_function: GO:0008936 - nicotinamidase activity [Evidence ISS] [PMID 11901108]; GO_function: GO:0008936 - nicotinamidase activity [Evidence IMP] [PMID 19381334]; GO_process: GO:0000183 - chromatin silencing at rDNA [Evidence IMP] [PMID 11901108]; GO_process: GO:0006348 - chromatin silencing at telomere [Evidence IMP] [PMID 11901108]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0019358 - nicotinate nucleotide salvage [Evidence ISS] [PMID 11901108]; GO_process: GO:0019363 - pyridine nucleotide biosynthetic process [Evidence IEA]; GO_process: GO:0001302 - replicative cell aging [Evidence IEP,IMP] [PMID 12736687]; nicotinamidase 1741362 PNC1 30036357 PNC1 Sugiyamaella lignohabitans nicotinamidase XP_018733913.1 1740670 R 796027 CDS AWJ20_4247 30036358 1741931..1742560 C 1 NC_031671.1 Highly conserved ATPase of HSP70/DnaK family; essential functional component of the EKC/KEOPS complex, with Bud32p, Cgi121p, Pcc1p, and Gon7p; EKC/KEOPS complex is required for t6A tRNA modification and telomeric TG1-3 recombination; may have role in transcription; GO_component: GO:0000408 - EKC/KEOPS complex [Evidence IDA] [PMID 16564010]; GO_component: GO:0000408 - EKC/KEOPS complex [Evidence IDA] [PMID 16874308]; GO_component: GO:0005694 - chromosome [Evidence IEA]; GO_component: GO:0000781 - chromosome, telomeric region [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0000790 - nuclear chromatin [Evidence IDA] [PMID 16874308]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0031490 - chromatin DNA binding [Evidence IDA] [PMID 16874308]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016746 - transferase activity, transferring acyl groups [Evidence IEA]; GO_function: GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups [Evidence IEA]; GO_process: GO:0051276 - chromosome organization [Evidence IMP] [PMID 18439903]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IPI] [PMID 16874308]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006400 - tRNA modification [Evidence IDA] [PMID 23620299]; GO_process: GO:0008033 - tRNA processing [Evidence IEA]; GO_process: GO:0000723 - telomere maintenance [Evidence IPI] [PMID 16564010]; GO_process: GO:0000722 - telomere maintenance via recombination [Evidence IGI,IMP] [PMID 23390378]; GO_process: GO:0070526 - threonylcarbamoyladenosine biosynthetic process [Evidence IEA]; GO_process: GO:0070525 - threonylcarbamoyladenosine metabolic process [Evidence IMP] [PMID 21183954]; GO_process: GO:0070525 - threonylcarbamoyladenosine metabolic process [Evidence IMP] [PMID 21459853]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Kae1p 1742560 KAE1 30036358 KAE1 Sugiyamaella lignohabitans Kae1p XP_018733914.1 1741931 D 796027 CDS AWJ20_4248 30036359 complement(1743369..1744427) C 1 NC_031671.1 Membrane glycoprotein v-SNARE; involved in retrograde transport from the Golgi to the endoplasmic reticulum (ER); required for N- and O-glycosylation in the Golgi but not in the ER; interacts with the Dsl1p complex through Tip20p; GO_component: GO:0031201 - SNARE complex [Evidence IDA] [PMID 12853481]; GO_component: GO:0031201 - SNARE complex [Evidence IDA] [PMID 12893879]; GO_component: GO:0031201 - SNARE complex [Evidence IDA] [PMID 9214619]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 11914276]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 8334998]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IDA,ISM] [PMID 1537327]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005777 - peroxisome [Evidence IDA] [PMID 19346454]; GO_function: GO:0005484 - SNAP receptor activity [Evidence ISM] [PMID 12853481]; GO_function: GO:0005484 - SNAP receptor activity [Evidence ISM] [PMID 12893879]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006890 - retrograde vesicle-mediated transport, Golgi to ER [Evidence IMP] [PMID 8612273]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0048279 - vesicle fusion with endoplasmic reticulum [Evidence IC] [PMID 8612273]; GO_process: GO:0048279 - vesicle fusion with endoplasmic reticulum [Evidence NAS] [PMID 9214619]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IEA]; Sec20p 1744427 SEC20 30036359 SEC20 Sugiyamaella lignohabitans Sec20p XP_018733915.1 1743369 R 796027 CDS AWJ20_4249 30036360 1744856..1745443 C 1 NC_031671.1 uncharacterized protein 1745443 30036360 AWJ20_4249 Sugiyamaella lignohabitans uncharacterized protein XP_018733916.1 1744856 D 796027 CDS AWJ20_4250 30036362 complement(1745659..1747257) C 1 NC_031671.1 uncharacterized protein 1747257 30036362 AWJ20_4250 Sugiyamaella lignohabitans uncharacterized protein XP_018733917.1 1745659 R 796027 CDS AWJ20_4251 30036363 complement(1747651..1748736) C 1 NC_031671.1 uncharacterized protein 1748736 30036363 AWJ20_4251 Sugiyamaella lignohabitans uncharacterized protein XP_018733918.1 1747651 R 796027 CDS AWJ20_4252 30036364 complement(1751242..1752807) C 1 NC_031671.1 uncharacterized protein 1752807 30036364 AWJ20_4252 Sugiyamaella lignohabitans uncharacterized protein XP_018733919.1 1751242 R 796027 CDS AWJ20_4253 30036365 complement(1756225..1759047) C 1 NC_031671.1 uncharacterized protein 1759047 30036365 AWJ20_4253 Sugiyamaella lignohabitans uncharacterized protein XP_018733920.1 1756225 R 796027 CDS AWJ20_4254 30036366 1760200..1763013 C 1 NC_031671.1 uncharacterized protein 1763013 30036366 AWJ20_4254 Sugiyamaella lignohabitans uncharacterized protein XP_018733921.1 1760200 D 796027 CDS AWJ20_4255 30036367 1765173..1767200 C 1 NC_031671.1 Peripheral protein of cytosolic face of mitochondrial outer membrane; required for mitochondrial fission; interacts with Fis1p and with the dynamin-related GTPase Dnm1p; contains WD repeats; MDV1 has a paralog, CAF4, that arose from the whole genome duplication; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IEA,IEA]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IDA] [PMID 11038180]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IDA] [PMID 11038182]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IDA] [PMID 16407407]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0043130 - ubiquitin binding [Evidence IDA] [PMID 21070969]; GO_process: GO:0000266 - mitochondrial fission [Evidence IGI,IMP] [PMID 11038180]; GO_process: GO:0000266 - mitochondrial fission [Evidence IGI,IMP,IPI] [PMID 11038182]; GO_process: GO:0000266 - mitochondrial fission [Evidence IGI,IMP] [PMID 11038183]; GO_process: GO:0000266 - mitochondrial fission [Evidence IGI,IMP,IPI] [PMID 11179417]; GO_process: GO:0000002 - mitochondrial genome maintenance [Evidence IGI,IMP] [PMID 11038182]; GO_process: GO:0016559 - peroxisome fission [Evidence IGI] [PMID 18445678]; Mdv1p 1767200 MDV1 30036367 MDV1 Sugiyamaella lignohabitans Mdv1p XP_018733922.1 1765173 D 796027 CDS AWJ20_4257 30036369 complement(1768460..1768681) C 1 NC_031671.1 uncharacterized protein 1768681 30036369 AWJ20_4257 Sugiyamaella lignohabitans uncharacterized protein XP_018733923.1 1768460 R 796027 CDS AWJ20_4258 30036370 complement(1769042..1770712) C 1 NC_031671.1 Subunit of the cytosolic chaperonin Cct ring complex; related to Tcp1p, required for the assembly of actin and tubulins in vivo; mutant has increased aneuploidy tolerance; GO_component: GO:0005832 - chaperonin-containing T-complex [Evidence IPI] [PMID 15704212]; GO_component: GO:0005832 - chaperonin-containing T-complex [Evidence IDA] [PMID 16762366]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0051082 - unfolded protein binding [Evidence IEA]; GO_function: GO:0051082 - unfolded protein binding [Evidence IDA] [PMID 16762366]; GO_process: GO:0044267 - cellular protein metabolic process [Evidence IEA]; GO_process: GO:0006457 - protein folding [Evidence IEA]; GO_process: GO:0006457 - protein folding [Evidence IDA] [PMID 16762366]; Cct7p 1770712 CCT7 30036370 CCT7 Sugiyamaella lignohabitans Cct7p XP_018733924.1 1769042 R 796027 CDS AWJ20_4259 30036371 complement(1775737..1776546) C 1 NC_031671.1 Putative subunit of U3-containing 90S preribosome complex; complex is involved in production of 18S rRNA and assembly of small ribosomal subunit; GO_component: GO:0030686 - 90S preribosome [Evidence IDA] [PMID 12150911]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0042274 - ribosomal small subunit biogenesis [Evidence IPI] [PMID 21724601]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; Utp30p 1776546 UTP30 30036371 UTP30 Sugiyamaella lignohabitans Utp30p XP_018733925.1 1775737 R 796027 CDS AWJ20_4260 30036373 1777339..1778802 C 1 NC_031671.1 Proteasome-interacting protein; involved in the assembly of the base subcomplex of the 19S proteasomal regulatory particle (RP); involved in DNA mismatch repair during slow growth; weak similarity to Msh1p; related to human 19S subunit S5b; structural study suggests Hsm3p is a scaffold protein for Rpt1p-Rpt2p complex formation; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 19446323]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 19446323]; GO_component: GO:0008540 - proteasome regulatory particle, base subcomplex [Evidence IDA,IPI] [PMID 19217412]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006281 - DNA repair [Evidence IEA]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0006298 - mismatch repair [Evidence IMP] [PMID 10681183]; GO_process: GO:0070682 - proteasome regulatory particle assembly [Evidence IMP] [PMID 19217412]; GO_process: GO:0070682 - proteasome regulatory particle assembly [Evidence IGI] [PMID 19412159]; GO_process: GO:0070682 - proteasome regulatory particle assembly [Evidence IGI,IMP] [PMID 19446322]; GO_process: GO:0070682 - proteasome regulatory particle assembly [Evidence IGI,IMP] [PMID 19446323]; Hsm3p 1778802 HSM3 30036373 HSM3 Sugiyamaella lignohabitans Hsm3p XP_018733926.1 1777339 D 796027 CDS AWJ20_4261 30036374 complement(1778938..1780374) C 1 NC_031671.1 Component of the Rix1 complex and pre-replicative complexes (pre-RCs); required for processing of ITS2 sequences from 35S pre-rRNA; component of the pre-60S ribosomal particle with the dynein-related AAA-type ATPase Mdn1p; required for pre-RC formation and maintenance during DNA replication licensing; highly conserved protein which contains several WD40 motifs; IPI3 is an essential gene; other members include Rix1p, Ipi1p, and Ipi3p; GO_component: GO:0097344 - Rix1 complex [Evidence IDA] [PMID 14759368]; GO_component: GO:0005656 - nuclear pre-replicative complex [Evidence IDA] [PMID 22421151]; GO_component: GO:0005654 - nucleoplasm [Evidence IDA] [PMID 15528184]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14690591]; GO_function: GO:0003682 - chromatin binding [Evidence IDA] [PMID 22421151]; GO_process: GO:0006267 - pre-replicative complex assembly involved in nuclear cell cycle DNA replication [Evidence IMP] [PMID 22421151]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0006364 - rRNA processing [Evidence IMP] [PMID 14759368]; GO_process: GO:0030174 - regulation of DNA-dependent DNA replication initiation [Evidence IMP] [PMID 22421151]; GO_process: GO:0000027 - ribosomal large subunit assembly [Evidence IMP] [PMID 15528184]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; Ipi3p 1780374 IPI3 30036374 IPI3 Sugiyamaella lignohabitans Ipi3p XP_018733927.1 1778938 R 796027 CDS AWJ20_4262 30036375 1780863..1782143 C 1 NC_031671.1 uncharacterized protein 1782143 30036375 AWJ20_4262 Sugiyamaella lignohabitans uncharacterized protein XP_018733928.1 1780863 D 796027 CDS AWJ20_4263 30036376 complement(1782361..1785597) C 1 NC_031671.1 ATP-dependent 3'-5' RNA helicase of the DExD/H family; involved in nuclear RNA processing and degradation both as a component of TRAMP complex and in TRAMP-independent processes; TRAMP unwinds RNA duplexes, with Mtr4p unwinding activity stimulated by Pap2p/Air2p but not dependent on ongoing polyadenylation; contains an arch domain, with two coiled-coil arms/stalks and a globular fist/KOW domain, which has RNA binding activity and is required for 5.8S rRNA processing; GO_component: GO:0031499 - TRAMP complex [Evidence IDA] [PMID 15828860]; GO_component: GO:0031499 - TRAMP complex [Evidence IDA] [PMID 15935758]; GO_component: GO:0031499 - TRAMP complex [Evidence IDA,IPI] [PMID 15935759]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 16541108]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 15226447]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 8756671]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0034459 - ATP-dependent 3'-5' RNA helicase activity [Evidence IDA,IMP] [PMID 18000032]; GO_function: GO:0034459 - ATP-dependent 3'-5' RNA helicase activity [Evidence IDA] [PMID 18096702]; GO_function: GO:0008026 - ATP-dependent helicase activity [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0004386 - helicase activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016817 - hydrolase activity, acting on acid anhydrides [Evidence IEA]; GO_function: GO:0016818 - hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides [Evidence IEA]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0008143 - poly(A) binding [Evidence IDA] [PMID 18096702]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0034475 - U4 snRNA 3'-end processing [Evidence IMP] [PMID 10508172]; GO_process: GO:0034475 - U4 snRNA 3'-end processing [Evidence IMP] [PMID 10611222]; GO_process: GO:0034476 - U5 snRNA 3'-end processing [Evidence IMP] [PMID 10508172]; GO_process: GO:0000467 - exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 10508172]; GO_process: GO:0000467 - exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 9463390]; GO_process: GO:0043629 - ncRNA polyadenylation [Evidence IDA] [PMID 15828860]; GO_process: GO:0043629 - ncRNA polyadenylation [Evidence IDA] [PMID 15935758]; GO_process: GO:0071031 - nuclear mRNA surveillance of mRNA 3'-end processing [Evidence IGI,IMP] [PMID 17410208]; GO_process: GO:0071042 - nuclear polyadenylation-dependent mRNA catabolic process [Evidence IMP] [PMID 19369424]; GO_process: GO:0071035 - nuclear polyadenylation-dependent rRNA catabolic process [Evidence IMP] [PMID 16374505]; GO_process: GO:0071035 - nuclear polyadenylation-dependent rRNA catabolic process [Evidence IMP] [PMID 18940861]; GO_process: GO:0071038 - nuclear polyadenylation-dependent tRNA catabolic process [Evidence IDA] [PMID 15828860]; GO_process: GO:0071038 - nuclear polyadenylation-dependent tRNA catabolic process [Evidence IDA] [PMID 15935758]; GO_process: GO:0071038 - nuclear polyadenylation-dependent tRNA catabolic process [Evidence IDA] [PMID 17643380]; GO_process: GO:0071038 - nuclear polyadenylation-dependent tRNA catabolic process [Evidence IGI] [PMID 18000032]; GO_process: GO:0071049 - nuclear retention of pre-mRNA with aberrant 3'-ends at the site of transcription [Evidence IGI] [PMID 11586364]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; GO_process: GO:0071051 - polyadenylation-dependent snoRNA 3'-end processing [Evidence IMP] [PMID 10611222]; GO_process: GO:0016075 - rRNA catabolic process [Evidence IMP] [PMID 10508172]; GO_process: GO:0016075 - rRNA catabolic process [Evidence IMP] [PMID 9463390]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; ATP-dependent RNA helicase MTR4 1785597 MTR4 30036376 MTR4 Sugiyamaella lignohabitans ATP-dependent RNA helicase MTR4 XP_018733929.1 1782361 R 796027 CDS AWJ20_4264 30036377 1790754..1792460 C 1 NC_031671.1 serine/threonine protein kinase NPR1 1792460 NPR1 30036377 NPR1 Sugiyamaella lignohabitans serine/threonine protein kinase NPR1 XP_018733930.1 1790754 D 796027 CDS AWJ20_4265 30036378 complement(1793607..1794617) C 1 NC_031671.1 uncharacterized protein 1794617 30036378 AWJ20_4265 Sugiyamaella lignohabitans uncharacterized protein XP_018733931.1 1793607 R 796027 CDS AWJ20_4266 30036379 complement(1795887..1796267) C 1 NC_031671.1 Mitochondrial ribosomal protein of the large subunit; GO_component: GO:0005762 - mitochondrial large ribosomal subunit [Evidence IDA] [PMID 9151978]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA,IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IDA] [PMID 9151978]; GO_process: GO:0032543 - mitochondrial translation [Evidence IC] [PMID 9151978]; GO_process: GO:0006412 - translation [Evidence IEA]; mitochondrial 54S ribosomal protein YmL19 1796267 MRPL19 30036379 MRPL19 Sugiyamaella lignohabitans mitochondrial 54S ribosomal protein YmL19 XP_018733932.1 1795887 R 796027 CDS AWJ20_4267 30036380 1797261..1798520 C 1 NC_031671.1 Mitochondrial serine hydroxymethyltransferase; converts serine to glycine plus 5,10 methylenetetrahydrofolate; involved in generating precursors for purine, pyrimidine, amino acid, and lipid biosynthesis; reverse reaction generates serine; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IMP] [PMID 6271]; GO_component: GO:0005739 - mitochondrion [Evidence IMP] [PMID 9398220]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0004372 - glycine hydroxymethyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0004372 - glycine hydroxymethyltransferase activity [Evidence IMP] [PMID 1100397]; GO_function: GO:0030170 - pyridoxal phosphate binding [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006563 - L-serine metabolic process [Evidence IEA]; GO_process: GO:0006544 - glycine metabolic process [Evidence IEA]; GO_process: GO:0006730 - one-carbon metabolic process [Evidence IEA]; GO_process: GO:0006730 - one-carbon metabolic process [Evidence IMP] [PMID 1100397]; GO_process: GO:0006730 - one-carbon metabolic process [Evidence IGI] [PMID 9398220]; GO_process: GO:0009070 - serine family amino acid biosynthetic process [Evidence IGI] [PMID 9398220]; GO_process: GO:0035999 - tetrahydrofolate interconversion [Evidence IEA]; glycine hydroxymethyltransferase SHM1 1798520 SHM1 30036380 SHM1 Sugiyamaella lignohabitans glycine hydroxymethyltransferase SHM1 XP_018733933.1 1797261 D 796027 CDS AWJ20_4269 30036382 1800472..1803603 C 1 NC_031671.1 Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is processed to make a nucleocapsid-like protein (Gag), reverse transcriptase (RT), protease (PR), and integrase (IN); similar to retroviral genes; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9448009]; GO_component: GO:0000943 - retrotransposon nucleocapsid [Evidence ISS] [PMID 9582191]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA,IEA]; GO_function: GO:0003887 - DNA-directed DNA polymerase activity [Evidence ISS] [PMID 9582191]; GO_function: GO:0003723 - RNA binding [Evidence IEA,IEA]; GO_function: GO:0003723 - RNA binding [Evidence ISS] [PMID 9582191]; GO_function: GO:0004523 - RNA-DNA hybrid ribonuclease activity [Evidence IEA]; GO_function: GO:0003964 - RNA-directed DNA polymerase activity [Evidence IEA,IEA]; GO_function: GO:0003964 - RNA-directed DNA polymerase activity [Evidence ISS] [PMID 9582191]; GO_function: GO:0004190 - aspartic-type endopeptidase activity [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0004519 - endonuclease activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004518 - nuclease activity [Evidence IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016779 - nucleotidyltransferase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence ISS] [PMID 9582191]; GO_function: GO:0004540 - ribonuclease activity [Evidence ISS] [PMID 9582191]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0015074 - DNA integration [Evidence IEA,IEA]; GO_process: GO:0006310 - DNA recombination [Evidence IEA]; GO_process: GO:0006261 - DNA-dependent DNA replication [Evidence IEA,IEA]; GO_process: GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic [Evidence IEA]; GO_process: GO:0006278 - RNA-dependent DNA replication [Evidence IEA,IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0090305 - nucleic acid phosphodiester bond hydrolysis [Evidence IEA]; GO_process: GO:0006508 - proteolysis [Evidence IEA]; GO_process: GO:0032196 - transposition [Evidence IEA]; GO_process: GO:0032197 - transposition, RNA-mediated [Evidence ISS] [PMID 9582191]; GO_process: GO:0019076 - viral release from host cell [Evidence IEA]; gag-pol fusion protein 1803603 30036382 AWJ20_4269 Sugiyamaella lignohabitans gag-pol fusion protein XP_018733934.1 1800472 D 796027 CDS AWJ20_4270 30036384 1804267..1805694 C 1 NC_031671.1 Component of the mitochondrial TIM22 complex; involved in insertion of polytopic proteins into the inner membrane; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0042721 - mitochondrial inner membrane protein insertion complex [Evidence IDA] [PMID 10637294]; GO_component: GO:0042721 - mitochondrial inner membrane protein insertion complex [Evidence IDA] [PMID 10648604]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0015266 - protein channel activity [Evidence IDA] [PMID 12637749]; GO_process: GO:0045039 - protein import into mitochondrial inner membrane [Evidence IGI] [PMID 10637294]; GO_process: GO:0045039 - protein import into mitochondrial inner membrane [Evidence IMP] [PMID 17893242]; GO_process: GO:0045039 - protein import into mitochondrial inner membrane [Evidence IGI,IMP] [PMID 9412462]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Tim54p 1805694 TIM54 30036384 TIM54 Sugiyamaella lignohabitans Tim54p XP_018733935.1 1804267 D 796027 CDS AWJ20_4271 30036385 complement(1805921..1808173) C 1 NC_031671.1 Ubiquitin-specific protease, deubiquitinates Ub-protein moieties; interacts with proteins that function in rRNA production and ribosome biogenesis; stabilizes Rpa190p, the largest subunit of RNAP I, by mediating its deubiquitination; controls PCNA deubiquitylation; may regulate silencing by acting on Sir4p; involved in posttranscriptionally regulating Gap1p and possibly other transporters; localized to the nucleolus; human USP36 is a functional analog of Ubp10p; GO_component: GO:0005694 - chromosome [Evidence IEA]; GO_component: GO:0000781 - chromosome, telomeric region [Evidence IEA,IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 22902402]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 10490600]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11914276]; GO_function: GO:0008234 - cysteine-type peptidase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_function: GO:0004843 - ubiquitin-specific protease activity [Evidence IDA] [PMID 10490600]; GO_process: GO:0006348 - chromatin silencing at telomere [Evidence IMP] [PMID 15721261]; GO_process: GO:0016578 - histone deubiquitination [Evidence IMP] [PMID 22829782]; GO_process: GO:0016579 - protein deubiquitination [Evidence IDA,IMP] [PMID 15721261]; GO_process: GO:0016579 - protein deubiquitination [Evidence IMP] [PMID 22829782]; GO_process: GO:0006508 - proteolysis [Evidence IEA]; GO_process: GO:0006511 - ubiquitin-dependent protein catabolic process [Evidence IEA]; Ubp10p 1808173 UBP10 30036385 UBP10 Sugiyamaella lignohabitans Ubp10p XP_018733936.1 1805921 R 796027 CDS AWJ20_4272 30036386 complement(1808691..1811231) C 1 NC_031671.1 AdoMet-dependent methyltransferase; involved in rRNA processing and 60S ribosomal subunit maturation; methylates G2922 in the tRNA docking site of the large subunit rRNA and in the absence of snR52, U2921; suppressor of PAB1 mutants; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 10556316]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 10648622]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 10556316]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 11583614]; GO_function: GO:0008168 - methyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0016435 - rRNA (guanine) methyltransferase activity [Evidence IMP] [PMID 15546625]; GO_function: GO:0008650 - rRNA (uridine-2'-O-)-methyltransferase activity [Evidence IGI] [PMID 14636587]; GO_function: GO:0008649 - rRNA methyltransferase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0001510 - RNA methylation [Evidence IEA]; GO_process: GO:0000466 - maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 10556316]; GO_process: GO:0000466 - maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 10648622]; GO_process: GO:0000463 - maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 10556316]; GO_process: GO:0000463 - maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 10648622]; GO_process: GO:0032259 - methylation [Evidence IEA,IEA]; GO_process: GO:0031167 - rRNA methylation [Evidence IEA]; GO_process: GO:0031167 - rRNA methylation [Evidence IGI] [PMID 14636587]; GO_process: GO:0031167 - rRNA methylation [Evidence IDA,IGI,IMP] [PMID 15546625]; GO_process: GO:0006364 - rRNA processing [Evidence IEA,IEA]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; Spb1p 1811231 SPB1 30036386 SPB1 Sugiyamaella lignohabitans Spb1p XP_018733937.1 1808691 R 796027 CDS AWJ20_4273 30036387 1819969..1821513 C 1 NC_031671.1 uncharacterized protein 1821513 30036387 AWJ20_4273 Sugiyamaella lignohabitans uncharacterized protein XP_018733938.1 1819969 D 796027 CDS AWJ20_4274 30036388 1822390..1822710 C 1 NC_031671.1 Cytochrome c, isoform 1; electron carrier of the mitochondrial intermembrane space that transfers electrons from ubiquinone-cytochrome c oxidoreductase to cytochrome c oxidase during cellular respiration; mutations in human homolog cause insulin-responsive hyperglycemia; CYC1 has a paralog, CYC7, that arose from the whole genome duplication; GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IEA]; GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IDA] [PMID 9866716]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0070469 - respiratory chain [Evidence IEA]; GO_function: GO:0009055 - electron carrier activity [Evidence IEA]; GO_function: GO:0009055 - electron carrier activity [Evidence IDA] [PMID 18975895]; GO_function: GO:0009055 - electron carrier activity [Evidence IDA] [PMID 7851399]; GO_function: GO:0020037 - heme binding [Evidence IEA]; GO_function: GO:0005506 - iron ion binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_process: GO:0006123 - mitochondrial electron transport, cytochrome c to oxygen [Evidence IDA] [PMID 7851399]; GO_process: GO:0006122 - mitochondrial electron transport, ubiquinol to cytochrome c [Evidence IDA] [PMID 7851399]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; cytochrome c isoform 1 1822710 CYC1 30036388 CYC1 Sugiyamaella lignohabitans cytochrome c isoform 1 XP_018733939.1 1822390 D 796027 CDS AWJ20_4275 30036389 1824146..1827307 C 1 NC_031671.1 Component of the SPS plasma membrane amino acid sensor system; senses external amino acid concentration and transmits intracellular signals that result in regulation of expression of amino acid permease genes; other members are Ssy1p, Ptr3p, and Ssy5p; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 10409731]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 24124599]; GO_function: GO:0015171 - amino acid transmembrane transporter activity [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0003333 - amino acid transmembrane transport [Evidence IEA]; GO_process: GO:0006865 - amino acid transport [Evidence IEA]; GO_process: GO:0043200 - response to amino acid [Evidence IMP] [PMID 10409731]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Ssy1p 1827307 SSY1 30036389 SSY1 Sugiyamaella lignohabitans Ssy1p XP_018733940.1 1824146 D 796027 CDS AWJ20_4276 30036390 complement(1827573..1828286) C 1 NC_031671.1 Member of the NineTeen Complex (NTC); NTC contains Prp19p and stabilizes U6 snRNA in catalytic forms of spliceosome containing U2, U5, and U6 snRNAs; interacts with Prp16p to modulate splicing fidelity; isy1 syf2 cells have defective spindles; GO_component: GO:0000974 - Prp19 complex [Evidence IDA] [PMID 11018040]; GO_component: GO:0071006 - U2-type catalytic step 1 spliceosome [Evidence IDA] [PMID 10094305]; GO_component: GO:0071006 - U2-type catalytic step 1 spliceosome [Evidence IDA] [PMID 11018040]; GO_component: GO:0071007 - U2-type catalytic step 2 spliceosome [Evidence IDA] [PMID 10094305]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0071014 - post-mRNA release spliceosomal complex [Evidence IDA] [PMID 10094305]; GO_component: GO:0071020 - post-spliceosomal complex [Evidence IDA] [PMID 10094305]; GO_component: GO:0005681 - spliceosomal complex [Evidence IEA]; GO_function: GO:0000384 - first spliceosomal transesterification activity [Evidence IGI] [PMID 16103217]; GO_function: GO:0000386 - second spliceosomal transesterification activity [Evidence IC] [PMID 10094305]; GO_process: GO:0008380 - RNA splicing [Evidence IEA]; GO_process: GO:0000350 - generation of catalytic spliceosome for second transesterification step [Evidence IMP] [PMID 10094305]; GO_process: GO:0000389 - mRNA 3'-splice site recognition [Evidence IMP] [PMID 16103217]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; Isy1p 1828286 ISY1 30036390 ISY1 Sugiyamaella lignohabitans Isy1p XP_018733941.1 1827573 R 796027 CDS AWJ20_4277 30036391 1829521..1831113 C 1 NC_031671.1 Myb family protein (predicted) 1831113 30036391 AWJ20_4277 Sugiyamaella lignohabitans Myb family protein (predicted) XP_018733942.1 1829521 D 796027 CDS AWJ20_4278 30036392 1832739..1834244 C 1 NC_031671.1 Cell wall protein with similarity to glucanases; may play a role in conjugation during mating based on its regulation by Ste12p; GO_component: GO:0005618 - cell wall [Evidence IEA,IEA]; GO_component: GO:0005576 - extracellular region [Evidence IEA]; GO_component: GO:0009277 - fungal-type cell wall [Evidence IDA] [PMID 9748433]; GO_function: GO:0042973 - glucan endo-1,3-beta-D-glucosidase activity [Evidence ISS] [PMID 9748433]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016798 - hydrolase activity, acting on glycosyl bonds [Evidence IEA]; GO_function: GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]; GO_process: GO:0005975 - carbohydrate metabolic process [Evidence IEA]; GO_process: GO:0007109 - cytokinesis, completion of separation [Evidence IMP] [PMID 9748433]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; Scw11p 1834244 SCW11 30036392 SCW11 Sugiyamaella lignohabitans Scw11p XP_018733943.1 1832739 D 796027 CDS AWJ20_4279 30036393 complement(1834532..1834849) C 1 NC_031671.1 uncharacterized protein 1834849 30036393 AWJ20_4279 Sugiyamaella lignohabitans uncharacterized protein XP_018733944.1 1834532 R 796027 CDS AWJ20_4280 30036395 complement(1834976..1835692) C 1 NC_031671.1 uncharacterized protein 1835692 30036395 AWJ20_4280 Sugiyamaella lignohabitans uncharacterized protein XP_018733945.1 1834976 R 796027 CDS AWJ20_4281 30036396 1838549..1839943 C 1 NC_031671.1 Aspartic protease; member of the yapsin family of proteases involved in cell wall growth and maintenance; attached to the plasma membrane via a glycosylphosphatidylinositol (GPI) anchor; YPS1 has a paralog, MKC7, that arose from the whole genome duplication; GO_component: GO:0031225 - anchored component of membrane [Evidence IEA]; GO_component: GO:0009277 - fungal-type cell wall [Evidence IDA] [PMID 10383953]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_function: GO:0004190 - aspartic-type endopeptidase activity [Evidence IEA,IEA]; GO_function: GO:0004190 - aspartic-type endopeptidase activity [Evidence IDA] [PMID 8389368]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_process: GO:0031505 - fungal-type cell wall organization [Evidence IGI] [PMID 16087741]; GO_process: GO:0016485 - protein processing [Evidence IDA] [PMID 8626758]; GO_process: GO:0006508 - proteolysis [Evidence IEA,IEA]; Yps1p 1839943 YPS1 30036396 YPS1 Sugiyamaella lignohabitans Yps1p XP_018733946.1 1838549 D 796027 CDS AWJ20_4282 30036397 complement(1840288..1841031) C 1 NC_031671.1 Cytochrome c1; component of the mitochondrial respiratory chain; expression is regulated by the heme-activated, glucose-repressed Hap2p/3p/4p/5p CCAAT-binding complex; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence TAS] [PMID 11279090]; GO_component: GO:0005746 - mitochondrial respiratory chain [Evidence TAS] [PMID 11279090]; GO_component: GO:0005750 - mitochondrial respiratory chain complex III [Evidence IDA] [PMID 10873857]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0070469 - respiratory chain [Evidence IEA]; GO_function: GO:0009055 - electron carrier activity [Evidence IEA]; GO_function: GO:0045153 - electron transporter, transferring electrons within CoQH2-cytochrome c reductase complex activity [Evidence IMP] [PMID 11279090]; GO_function: GO:0020037 - heme binding [Evidence IEA]; GO_function: GO:0005506 - iron ion binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_process: GO:0006122 - mitochondrial electron transport, ubiquinol to cytochrome c [Evidence IMP] [PMID 11279090]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; GO_process: GO:0006119 - oxidative phosphorylation [Evidence TAS] [PMID 11279090]; ubiquinol--cytochrome-c reductase catalytic subunit CYT1 1841031 CYT1 30036397 CYT1 Sugiyamaella lignohabitans ubiquinol--cytochrome-c reductase catalytic subunit CYT1 XP_018733947.1 1840288 R 796027 CDS AWJ20_4283 30036398 1849212..1852604 C 1 NC_031671.1 Phosphatidylinositol 4,5-bisphosphate 5-phosphatase; synaptojanin-like protein with an N-terminal Sac1 domain, plays a role in phosphatidylinositol 4,5-bisphosphate homeostasis and in endocytosis; null mutation confers cold-tolerant growth; GO_component: GO:0030479 - actin cortical patch [Evidence IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 17452534]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IDA] [PMID 9560389]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0004439 - phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity [Evidence IEA]; GO_function: GO:0004439 - phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity [Evidence IDA] [PMID 10224048]; GO_function: GO:0004439 - phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity [Evidence IMP] [PMID 9438131]; GO_function: GO:0004439 - phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity [Evidence IDA,IMP] [PMID 9565610]; GO_function: GO:0042578 - phosphoric ester hydrolase activity [Evidence IEA]; GO_process: GO:0006897 - endocytosis [Evidence IEA]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0046856 - phosphatidylinositol dephosphorylation [Evidence IEA]; GO_process: GO:0046856 - phosphatidylinositol dephosphorylation [Evidence IDA] [PMID 10224048]; GO_process: GO:0046856 - phosphatidylinositol dephosphorylation [Evidence IMP] [PMID 9438131]; GO_process: GO:0046856 - phosphatidylinositol dephosphorylation [Evidence IMP] [PMID 9560389]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; phosphoinositide 5-phosphatase INP51 1852604 INP51 30036398 INP51 Sugiyamaella lignohabitans phosphoinositide 5-phosphatase INP51 XP_018733948.1 1849212 D 796027 CDS AWJ20_4284 30036399 complement(1853650..1856451) C 1 NC_031671.1 uncharacterized protein 1856451 30036399 AWJ20_4284 Sugiyamaella lignohabitans uncharacterized protein XP_018733949.1 1853650 R 796027 CDS AWJ20_4285 30036400 1862103..1864394 C 1 NC_031671.1 uncharacterized protein 1864394 30036400 AWJ20_4285 Sugiyamaella lignohabitans uncharacterized protein XP_018733950.1 1862103 D 796027 CDS AWJ20_4286 30036401 complement(1865520..1867772) C 1 NC_031671.1 tRNA 3'-end processing endonuclease tRNase Z; also localized to mitochondria and interacts genetically with Rex2 exonuclease; homolog of the human candidate prostate cancer susceptibility gene ELAC2; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14690591]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 24249226]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 24249226]; GO_function: GO:0042781 - 3'-tRNA processing endoribonuclease activity [Evidence IDA] [PMID 12711671]; GO_function: GO:0042781 - 3'-tRNA processing endoribonuclease activity [Evidence IDA] [PMID 24249226]; GO_function: GO:0004519 - endonuclease activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA,IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004518 - nuclease activity [Evidence IEA]; GO_process: GO:1990180 - mitochondrial tRNA 3'-end processing [Evidence IDA,IMP] [PMID 24249226]; GO_process: GO:0042780 - tRNA 3'-end processing [Evidence IDA] [PMID 24249226]; GO_process: GO:0034414 - tRNA 3'-trailer cleavage, endonucleolytic [Evidence IDA] [PMID 12711671]; GO_process: GO:0034414 - tRNA 3'-trailer cleavage, endonucleolytic [Evidence IMP] [PMID 24249226]; GO_process: GO:0008033 - tRNA processing [Evidence IEA,IEA]; Trz1p 1867772 TRZ1 30036401 TRZ1 Sugiyamaella lignohabitans Trz1p XP_018733951.1 1865520 R 796027 CDS AWJ20_4287 30036402 1869437..1872109 C 1 NC_031671.1 uncharacterized protein 1872109 30036402 AWJ20_4287 Sugiyamaella lignohabitans uncharacterized protein XP_018733952.1 1869437 D 796027 CDS AWJ20_4288 30036403 1873480..1873869 C 1 NC_031671.1 uncharacterized protein 1873869 30036403 AWJ20_4288 Sugiyamaella lignohabitans uncharacterized protein XP_018733953.1 1873480 D 796027 CDS AWJ20_4289 30036404 1886235..1888196 C 1 NC_031671.1 Essential nuclear envelope integral membrane protein; required for nuclear envelope morphology, nuclear pore complex localization, nuclear export; exhibits synthetic lethal genetic interactions with genes involved in lipid metabolism; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005635 - nuclear envelope [Evidence IDA] [PMID 11483521]; GO_component: GO:0031965 - nuclear membrane [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0044255 - cellular lipid metabolic process [Evidence IGI] [PMID 20016074]; GO_process: GO:0006406 - mRNA export from nucleus [Evidence IEA]; GO_process: GO:0006406 - mRNA export from nucleus [Evidence IMP] [PMID 11483521]; GO_process: GO:0051028 - mRNA transport [Evidence IEA]; GO_process: GO:0006998 - nuclear envelope organization [Evidence IEA]; GO_process: GO:0006611 - protein export from nucleus [Evidence IEA]; GO_process: GO:0006611 - protein export from nucleus [Evidence IMP] [PMID 11483521]; GO_process: GO:0006810 - transport [Evidence IEA]; Brr6p 1888196 BRR6 30036404 BRR6 Sugiyamaella lignohabitans Brr6p XP_018733954.1 1886235 D 796027 CDS AWJ20_4290 30036406 complement(1889251..1889799) C 1 NC_031671.1 Nuclear protein with decapping endonuclease activity; targets mRNAs with unmethylated 7-methylguanosine cap structures and 5'-triphosphates; binds to and stabilizes the exoribonuclease Rat1p; required for pre-rRNA processing; relocalizes to the cytosol in response to hypoxia; homologous to human DOM3Z; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 22932476]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IPI] [PMID 10805743]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 12612077]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22932476]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0034353 - RNA pyrophosphohydrolase activity [Evidence IDA] [PMID 20802481]; GO_function: GO:0030234 - enzyme regulator activity [Evidence IDA] [PMID 10805743]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004518 - nuclease activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:1990174 - phosphodiesterase decapping endonuclease activity [Evidence IDA,IMP] [PMID 20802481]; GO_process: GO:0006353 - DNA-templated transcription, termination [Evidence IEA]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0000466 - maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 10805743]; GO_process: GO:0000463 - maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 10805743]; GO_process: GO:0071035 - nuclear polyadenylation-dependent rRNA catabolic process [Evidence IMP] [PMID 16131592]; GO_process: GO:0000956 - nuclear-transcribed mRNA catabolic process [Evidence IDA,IMP] [PMID 20802481]; GO_process: GO:0090305 - nucleic acid phosphodiester bond hydrolysis [Evidence IEA]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0030846 - termination of RNA polymerase II transcription, poly(A)-coupled [Evidence IMP] [PMID 15565157]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Rai1p 1889799 RAI1 30036406 RAI1 Sugiyamaella lignohabitans Rai1p XP_018733955.1 1889251 R 796027 CDS AWJ20_4291 30036407 1890208..1892316 C 1 NC_031671.1 Nexin-1 homolog; required for localizing membrane proteins from a prevacuolar/late endosomal compartment back to late Golgi; structural component of retromer membrane coat complex; forms a retromer subcomplex with Vps17p; required for recruiting the retromer complex to the endosome membranes; VPS5 has a paralog, YKR078W, that arose from the whole genome duplication; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 9175702]; GO_component: GO:0005768 - endosome [Evidence IEA]; GO_component: GO:0005768 - endosome [Evidence IDA] [PMID 9175702]; GO_component: GO:0005768 - endosome [Evidence IDA] [PMID 9700157]; GO_component: GO:0010008 - endosome membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0030904 - retromer complex [Evidence IEA]; GO_component: GO:0030904 - retromer complex [Evidence IMP,IPI] [PMID 9700157]; GO_component: GO:0030905 - retromer complex, outer shell [Evidence IPI] [PMID 9700157]; GO_function: GO:0035091 - phosphatidylinositol binding [Evidence IEA]; GO_function: GO:0032266 - phosphatidylinositol-3-phosphate binding [Evidence IEA]; GO_function: GO:0032266 - phosphatidylinositol-3-phosphate binding [Evidence IDA] [PMID 11557775]; GO_function: GO:0008565 - protein transporter activity [Evidence IMP,IPI] [PMID 9700157]; GO_process: GO:0045053 - protein retention in Golgi apparatus [Evidence IMP] [PMID 8649377]; GO_process: GO:0015031 - protein transport [Evidence IEA,IEA]; GO_process: GO:0042147 - retrograde transport, endosome to Golgi [Evidence IEA]; GO_process: GO:0042147 - retrograde transport, endosome to Golgi [Evidence IPI] [PMID 9700157]; GO_process: GO:0006810 - transport [Evidence IEA]; Vps5p 1892316 VPS5 30036407 VPS5 Sugiyamaella lignohabitans Vps5p XP_018733956.1 1890208 D 796027 CDS AWJ20_4292 30036408 complement(1893516..1895558) C 1 NC_031671.1 Non-catalytic subunit of N-terminal acetyltransferase of the NatC type; required for replication of dsRNA virus; expression is glucose-repressible; GO_component: GO:0031417 - NatC complex [Evidence IDA] [PMID 10504710]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0004596 - peptide alpha-N-acetyltransferase activity [Evidence IMP] [PMID 11274203]; GO_process: GO:0006474 - N-terminal protein amino acid acetylation [Evidence IMP] [PMID 11274203]; Mak10p 1895558 MAK10 30036408 MAK10 Sugiyamaella lignohabitans Mak10p XP_018733957.1 1893516 R 796027 CDS AWJ20_4293 30036409 complement(join(1896697..1898820,1899621..1900322)) C 1 NC_031671.1 Dynamin-like GTPase required for vacuolar sorting; also involved in actin cytoskeleton organization, endocytosis, late Golgi-retention of some proteins, regulation of peroxisome biogenesis; GO_component: GO:0030479 - actin cortical patch [Evidence IDA] [PMID 20841380]; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA,IEA]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 15550248]; GO_component: GO:0005874 - microtubule [Evidence IEA]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IDA] [PMID 16407407]; GO_component: GO:0005777 - peroxisome [Evidence IDA] [PMID 16520372]; GO_function: GO:0005525 - GTP binding [Evidence IEA,IEA]; GO_function: GO:0003924 - GTPase activity [Evidence IEA]; GO_function: GO:0003924 - GTPase activity [Evidence IDA,ISS] [PMID 8299420]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006184 - GTP catabolic process [Evidence IEA]; GO_process: GO:0030036 - actin cytoskeleton organization [Evidence IGI,IMP,IPI] [PMID 15265985]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0006897 - endocytosis [Evidence IGI,IMP] [PMID 20841380]; GO_process: GO:0060988 - lipid tube assembly [Evidence IDA] [PMID 20841380]; GO_process: GO:0007126 - meiotic nuclear division [Evidence IEA]; GO_process: GO:0016559 - peroxisome fission [Evidence IMP] [PMID 18445678]; GO_process: GO:0007031 - peroxisome organization [Evidence IDA,IGI,IMP] [PMID 12707309]; GO_process: GO:0045053 - protein retention in Golgi apparatus [Evidence IMP] [PMID 8649377]; GO_process: GO:0006623 - protein targeting to vacuole [Evidence IMP] [PMID 8299420]; GO_process: GO:0007034 - vacuolar transport [Evidence IMP] [PMID 8299420]; dynamin-like GTPase VPS1 1900322 VPS1 30036409 VPS1 Sugiyamaella lignohabitans dynamin-like GTPase VPS1 XP_018733958.1 1896697 R 796027 CDS AWJ20_4294 30036410 1902469..1903350 C 1 NC_031671.1 Peroxisomal 2,4-dienoyl-CoA reductase; auxiliary enzyme of fatty acid beta-oxidation; homodimeric enzyme required for growth and sporulation on petroselineate medium; expression induced during late sporulation and in the presence of oleate; GO_component: GO:0005782 - peroxisomal matrix [Evidence IDA] [PMID 9268358]; GO_component: GO:0005777 - peroxisome [Evidence IEA,IEA]; GO_function: GO:0008670 - 2,4-dienoyl-CoA reductase (NADPH) activity [Evidence IEA]; GO_function: GO:0008670 - 2,4-dienoyl-CoA reductase (NADPH) activity [Evidence IDA,ISS] [PMID 9268358]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_process: GO:0030437 - ascospore formation [Evidence IEP,IMP] [PMID 7969036]; GO_process: GO:0009062 - fatty acid catabolic process [Evidence IDA,ISS] [PMID 9268358]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; GO_process: GO:0030435 - sporulation resulting in formation of a cellular spore [Evidence IEA]; Sps19p 1903350 SPS19 30036410 SPS19 Sugiyamaella lignohabitans Sps19p XP_018733959.1 1902469 D 796027 CDS AWJ20_4295 30036411 1905497..1906714 C 1 NC_031671.1 Putative vacuolar membrane transporter for cationic amino acids; likely contributes to amino acid homeostasis by exporting cationic amino acids from the vacuole; member of the PQ-loop family, with seven transmembrane domains; mutant phenotype is functionally complemented by rat PQLC2 vacuolar transporter; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 14562095]; GO_component: GO:0071627 - integral component of fungal-type vacuolar membrane [Evidence IDA] [PMID 23169667]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0015326 - cationic amino acid transmembrane transporter activity [Evidence IMP,ISO] [PMID 23169667]; GO_process: GO:0006865 - amino acid transport [Evidence IEA]; GO_process: GO:0034488 - basic amino acid transmembrane export from vacuole [Evidence IMP,ISO] [PMID 23169667]; GO_process: GO:0006810 - transport [Evidence IEA]; Ypq2p 1906714 YPQ2 30036411 YPQ2 Sugiyamaella lignohabitans Ypq2p XP_018733960.1 1905497 D 796027 CDS AWJ20_4296 30036412 1907089..1908690 C 1 NC_031671.1 Poly(A) polymerase; one of three factors required for mRNA 3'-end polyadenylation, forms multiprotein complex with polyadenylation factor I (PF I), also required for mRNA nuclear export; may also polyadenylate rRNAs; required for gene looping; GO_component: GO:0005847 - mRNA cleavage and polyadenylation specificity factor complex [Evidence IDA] [PMID 12819204]; GO_component: GO:0005654 - nucleoplasm [Evidence IPI] [PMID 8631901]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA,IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016779 - nucleotidyltransferase activity [Evidence IEA]; GO_function: GO:0004652 - polynucleotide adenylyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0004652 - polynucleotide adenylyltransferase activity [Evidence IDA] [PMID 17850751]; GO_function: GO:0004652 - polynucleotide adenylyltransferase activity [Evidence IDA] [PMID 1840648]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0031123 - RNA 3'-end processing [Evidence IEA]; GO_process: GO:0043631 - RNA polyadenylation [Evidence IEA]; GO_process: GO:0006378 - mRNA polyadenylation [Evidence IDA] [PMID 1840648]; GO_process: GO:0006378 - mRNA polyadenylation [Evidence IMP] [PMID 8524265]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0071050 - snoRNA polyadenylation [Evidence IGI] [PMID 18951092]; polynucleotide adenylyltransferase PAP1 1908690 PAP1 30036412 PAP1 Sugiyamaella lignohabitans polynucleotide adenylyltransferase PAP1 XP_018733961.1 1907089 D 796027 CDS AWJ20_4297 30036413 complement(1909221..1910666) C 1 NC_031671.1 Ribosomal lysine methyltransferase; specific for monomethylation of Rpl42ap and Rpl42bp (lysine 55); nuclear SET-domain containing protein; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0008168 - methyltransferase activity [Evidence IEA]; GO_function: GO:0016279 - protein-lysine N-methyltransferase activity [Evidence IGI,IMP] [PMID 18957409]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0032259 - methylation [Evidence IEA]; GO_process: GO:0018026 - peptidyl-lysine monomethylation [Evidence IGI,IMP] [PMID 18957409]; Rkm4p 1910666 RKM4 30036413 RKM4 Sugiyamaella lignohabitans Rkm4p XP_018733962.1 1909221 R 796027 CDS AWJ20_4298 30036414 1911078..1912403 C 1 NC_031671.1 Subunit of the Hat1p-Hat2p histone acetyltransferase complex; required for high affinity binding of the complex to free histone H4, thereby enhancing Hat1p activity; similar to human RbAp46 and 48; has a role in telomeric silencing; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 8858151]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 9575221]; GO_component: GO:0000123 - histone acetyltransferase complex [Evidence IPI] [PMID 14761951]; GO_component: GO:0000123 - histone acetyltransferase complex [Evidence IDA,IPI] [PMID 8858151]; GO_component: GO:0000123 - histone acetyltransferase complex [Evidence IDA] [PMID 9575221]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14761951]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9575221]; GO_function: GO:0004402 - histone acetyltransferase activity [Evidence IDA,IMP] [PMID 8858151]; GO_function: GO:0004402 - histone acetyltransferase activity [Evidence IMP] [PMID 9575221]; GO_function: GO:0042393 - histone binding [Evidence IDA] [PMID 8858151]; GO_process: GO:0006281 - DNA repair [Evidence IEA]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0006333 - chromatin assembly or disassembly [Evidence IDA] [PMID 8858151]; GO_process: GO:0016568 - chromatin modification [Evidence IEA]; GO_process: GO:0006348 - chromatin silencing at telomere [Evidence IGI] [PMID 10982821]; GO_process: GO:0016573 - histone acetylation [Evidence IDA,IMP] [PMID 8858151]; GO_process: GO:0016573 - histone acetylation [Evidence IMP] [PMID 9575221]; Hat2p 1912403 HAT2 30036414 HAT2 Sugiyamaella lignohabitans Hat2p XP_018733963.1 1911078 D 796027 CDS AWJ20_4299 30036415 1912854..1913720 C 1 NC_031671.1 54S ribosomal protein L50, mitochondrial 1913720 30036415 AWJ20_4299 Sugiyamaella lignohabitans 54S ribosomal protein L50, mitochondrial XP_018733964.1 1912854 D 796027 CDS AWJ20_4300 30036418 complement(1913902..1917126) C 1 NC_031671.1 Karyopherin; a carrier protein involved in nuclear import of proteins; importin beta homolog; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 9852143]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0034399 - nuclear periphery [Evidence IDA] [PMID 22842922]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9852143]; GO_function: GO:0008536 - Ran GTPase binding [Evidence IEA]; GO_function: GO:0008565 - protein transporter activity [Evidence IMP] [PMID 9755161]; GO_function: GO:0008565 - protein transporter activity [Evidence IDA] [PMID 9852143]; GO_process: GO:0006886 - intracellular protein transport [Evidence IEA]; GO_process: GO:0006606 - protein import into nucleus [Evidence IMP,ISS] [PMID 9755161]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Nmd5p 1917126 NMD5 30036418 NMD5 Sugiyamaella lignohabitans Nmd5p XP_018733965.1 1913902 R 796027 CDS AWJ20_4301 30036419 1918215..1918988 C 1 NC_031671.1 Isoamyl acetate-hydrolyzing esterase; required in balance with alcohol acetyltransferase to maintain optimal amounts of isoamyl acetate, which is particularly important in sake brewing; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA,IEA]; GO_function: GO:0016788 - hydrolase activity, acting on ester bonds [Evidence IEA]; GO_function: GO:0016788 - hydrolase activity, acting on ester bonds [Evidence IDA] [PMID 10855721]; GO_process: GO:0006083 - acetate metabolic process [Evidence IDA] [PMID 10855721]; GO_process: GO:0016042 - lipid catabolic process [Evidence IEA]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA,IEA]; Iah1p 1918988 IAH1 30036419 IAH1 Sugiyamaella lignohabitans Iah1p XP_018733966.1 1918215 D 796027 CDS AWJ20_4302 30036420 1920775..1921500 C 1 NC_031671.1 uncharacterized protein 1921500 30036420 AWJ20_4302 Sugiyamaella lignohabitans uncharacterized protein XP_018733967.1 1920775 D 796027 CDS AWJ20_4303 30036421 complement(1921755..1922717) C 1 NC_031671.1 uncharacterized protein 1922717 30036421 AWJ20_4303 Sugiyamaella lignohabitans uncharacterized protein XP_018733968.1 1921755 R 796027 CDS AWJ20_4307 30036425 complement(1927292..1929343) C 1 NC_031671.1 pheromone-regulated protein PRM1 1929343 PRM1 30036425 PRM1 Sugiyamaella lignohabitans pheromone-regulated protein PRM1 XP_018733969.1 1927292 R 796027 CDS AWJ20_4308 30036426 complement(1929934..1932174) C 1 NC_031671.1 Mitochondrial inner membrane ATP-binding cassette (ABC) transporter; exports mitochondrially synthesized precursors of iron-sulfur (Fe/S) clusters to the cytosol; GO_component: GO:0016021 - integral component of membrane [Evidence IBA,IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IDA] [PMID 7828591]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016887 - ATPase activity [Evidence IEA]; GO_function: GO:0016887 - ATPase activity [Evidence IDA] [PMID 16754360]; GO_function: GO:0042626 - ATPase activity, coupled to transmembrane movement of substances [Evidence IEA]; GO_function: GO:0042626 - ATPase activity, coupled to transmembrane movement of substances [Evidence IMP,ISS] [PMID 7828591]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0006879 - cellular iron ion homeostasis [Evidence IMP] [PMID 9428742]; GO_process: GO:0006811 - ion transport [Evidence IEA]; GO_process: GO:0055072 - iron ion homeostasis [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IBA,IEA]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; ATP-binding cassette Fe/S cluster precursor transporter ATM1 1932174 ATM1 30036426 ATM1 Sugiyamaella lignohabitans ATP-binding cassette Fe/S cluster precursor transporter ATM1 XP_018733970.1 1929934 R 796027 CDS AWJ20_4309 30036427 complement(1932833..1933690) C 1 NC_031671.1 uncharacterized protein 1933690 30036427 AWJ20_4309 Sugiyamaella lignohabitans uncharacterized protein XP_018733971.1 1932833 R 796027 CDS AWJ20_4310 30036429 complement(1934204..1938676) C 1 NC_031671.1 Trans-golgi network aminophospholipid translocase (flippase); maintains membrane lipid asymmetry in post-Golgi secretory vesicles; localizes to the trans-Golgi network; likely involved in protein transport; type 4 P-type ATPase; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005802 - trans-Golgi network [Evidence IDA] [PMID 17093059]; GO_component: GO:0030140 - trans-Golgi network transport vesicle [Evidence IDA] [PMID 12221123]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0019829 - cation-transporting ATPase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0000287 - magnesium ion binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_function: GO:0004012 - phospholipid-translocating ATPase activity [Evidence IEA,IEA]; GO_function: GO:0004012 - phospholipid-translocating ATPase activity [Evidence IGI,IMP] [PMID 16452632]; GO_process: GO:0006812 - cation transport [Evidence IEA]; GO_process: GO:0006886 - intracellular protein transport [Evidence IGI] [PMID 12221123]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0045332 - phospholipid translocation [Evidence IMP] [PMID 16452632]; GO_process: GO:0015914 - phospholipid transport [Evidence IEA]; aminophospholipid-translocating P4-type ATPase DNF3 1938676 DNF3 30036429 DNF3 Sugiyamaella lignohabitans aminophospholipid-translocating P4-type ATPase DNF3 XP_018733972.1 1934204 R 796027 CDS AWJ20_4311 30036430 1935417..1935698 C 1 NC_031671.1 uncharacterized protein 1935698 30036430 AWJ20_4311 Sugiyamaella lignohabitans uncharacterized protein XP_018733973.1 1935417 D 796027 CDS AWJ20_4312 30036431 complement(1938960..1940012) C 1 NC_031671.1 Trans-golgi network aminophospholipid translocase (flippase); maintains membrane lipid asymmetry in post-Golgi secretory vesicles; localizes to the trans-Golgi network; likely involved in protein transport; type 4 P-type ATPase; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005802 - trans-Golgi network [Evidence IDA] [PMID 17093059]; GO_component: GO:0030140 - trans-Golgi network transport vesicle [Evidence IDA] [PMID 12221123]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0019829 - cation-transporting ATPase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0000287 - magnesium ion binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_function: GO:0004012 - phospholipid-translocating ATPase activity [Evidence IEA,IEA]; GO_function: GO:0004012 - phospholipid-translocating ATPase activity [Evidence IGI,IMP] [PMID 16452632]; GO_process: GO:0006812 - cation transport [Evidence IEA]; GO_process: GO:0006886 - intracellular protein transport [Evidence IGI] [PMID 12221123]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0045332 - phospholipid translocation [Evidence IMP] [PMID 16452632]; GO_process: GO:0015914 - phospholipid transport [Evidence IEA]; aminophospholipid-translocating P4-type ATPase DNF3 1940012 DNF3 30036431 DNF3 Sugiyamaella lignohabitans aminophospholipid-translocating P4-type ATPase DNF3 XP_018733974.1 1938960 R 796027 CDS AWJ20_4313 30036432 1945012..1945314 C 1 NC_031671.1 Ribosomal 60S subunit protein L19A; rpl19a and rpl19b single null mutations result in slow growth, while the double null mutation is lethal; homologous to mammalian ribosomal protein L19, no bacterial homolog; RPL19A has a paralog, RPL19B, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0022625 - cytosolic large ribosomal subunit [Evidence IDA] [PMID 11983894]; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA,IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IC] [PMID 11983894]; GO_process: GO:0002181 - cytoplasmic translation [Evidence IC] [PMID 11983894]; GO_process: GO:0006412 - translation [Evidence IEA]; ribosomal 60S subunit protein L19A 1945314 RPL19A 30036432 RPL19A Sugiyamaella lignohabitans ribosomal 60S subunit protein L19A XP_018733975.1 1945012 D 796027 CDS AWJ20_4314 30036433 1947551..1948150 C 1 NC_031671.1 Conserved NADPH oxidoreductase containing flavin mononucleotide (FMN); responsible for geraniol reduction into citronellol during fermentation; homologous to Oye3p with different ligand binding and catalytic properties; may be involved in sterol metabolism, oxidative stress response, and programmed cell death; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 17897954]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0010181 - FMN binding [Evidence IEA]; GO_function: GO:0003959 - NADPH dehydrogenase activity [Evidence IEA]; GO_function: GO:0003959 - NADPH dehydrogenase activity [Evidence IDA,ISS] [PMID 8454584]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0018548 - pentaerythritol trinitrate reductase activity [Evidence IEA]; GO_function: GO:0052690 - trichloro-p-hydroquinone reductive dehalogenase activity [Evidence IEA]; GO_process: GO:0006915 - apoptotic process [Evidence IMP] [PMID 17897954]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; Oye2p 1948150 OYE2 30036433 OYE2 Sugiyamaella lignohabitans Oye2p XP_018733976.1 1947551 D 796027 CDS AWJ20_4315 30036434 1949423..1949962 C 1 NC_031671.1 Conserved NADPH oxidoreductase containing flavin mononucleotide (FMN); responsible for geraniol reduction into citronellol during fermentation; homologous to Oye3p with different ligand binding and catalytic properties; may be involved in sterol metabolism, oxidative stress response, and programmed cell death; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 17897954]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0010181 - FMN binding [Evidence IEA]; GO_function: GO:0003959 - NADPH dehydrogenase activity [Evidence IEA]; GO_function: GO:0003959 - NADPH dehydrogenase activity [Evidence IDA,ISS] [PMID 8454584]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0018548 - pentaerythritol trinitrate reductase activity [Evidence IEA]; GO_function: GO:0052690 - trichloro-p-hydroquinone reductive dehalogenase activity [Evidence IEA]; GO_process: GO:0006915 - apoptotic process [Evidence IMP] [PMID 17897954]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; Oye2p 1949962 OYE2 30036434 OYE2 Sugiyamaella lignohabitans Oye2p XP_018733977.1 1949423 D 796027 CDS AWJ20_4316 30036435 1950997..1951368 C 1 NC_031671.1 Protein involved in mitochondrial function or organization; null mutant displays elevated frequency of mitochondrial genome loss; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; Aim1p 1951368 AIM1 30036435 AIM1 Sugiyamaella lignohabitans Aim1p XP_018733978.1 1950997 D 796027 CDS AWJ20_4317 30036436 1956643..1957866 C 1 NC_031671.1 uncharacterized protein 1957866 30036436 AWJ20_4317 Sugiyamaella lignohabitans uncharacterized protein XP_018733979.1 1956643 D 796027 CDS AWJ20_4318 30036437 complement(1958970..1961627) C 1 NC_031671.1 Transcription factor targeting filamentation genes and Ty1 expression; Ste12p activation of most filamentation gene promoters depends on Tec1p and Tec1p transcriptional activity is dependent on its association with Ste12p; binds to TCS elements upstream of filamentation genes, which are regulated by Tec1p/Ste12p/Dig1p complex; competes with Dig2p for binding to Ste12p/Dig1p; positive regulator of chronological life span; TEA/ATTS DNA-binding domain family member; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 19218425]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0000978 - RNA polymerase II core promoter proximal region sequence-specific DNA binding [Evidence IDA] [PMID 9036858]; GO_function: GO:0001077 - RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription [Evidence IDA] [PMID 9036858]; GO_function: GO:0001135 - RNA polymerase II transcription factor recruiting transcription factor activity [Evidence IGI,IMP] [PMID 16782869]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19111667]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19158363]; GO_function: GO:0003700 - sequence-specific DNA binding transcription factor activity [Evidence IEA]; GO_process: GO:0001300 - chronological cell aging [Evidence IMP] [PMID 21840851]; GO_process: GO:0001403 - invasive growth in response to glucose limitation [Evidence IMP] [PMID 12455687]; GO_process: GO:0036003 - positive regulation of transcription from RNA polymerase II promoter in response to stress [Evidence IDA] [PMID 9036858]; GO_process: GO:0010527 - positive regulation of transposition, RNA-mediated [Evidence IMP] [PMID 10652102]; GO_process: GO:0007124 - pseudohyphal growth [Evidence IMP] [PMID 8730867]; GO_process: GO:0007124 - pseudohyphal growth [Evidence IDA,IMP] [PMID 9036858]; GO_process: GO:0007124 - pseudohyphal growth [Evidence IMP] [PMID 9055077]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA,IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Tec1p 1961627 TEC1 30036437 TEC1 Sugiyamaella lignohabitans Tec1p XP_018733980.1 1958970 R 796027 CDS AWJ20_4319 30036438 1967187..1968758 C 1 NC_031671.1 Protein involved in bud site selection during bipolar budding; localization requires Rax2p; has similarity to members of the insulin-related peptide superfamily; GO_component: GO:0005935 - cellular bud neck [Evidence IEA]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 14980713]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 15356260]; GO_component: GO:0005934 - cellular bud tip [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016021 - integral component of membrane [Evidence ISS] [PMID 15356260]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0000282 - cellular bud site selection [Evidence IGI] [PMID 11110666]; GO_process: GO:0038032 - termination of G-protein coupled receptor signaling pathway [Evidence IEA]; Rax1p 1968758 RAX1 30036438 RAX1 Sugiyamaella lignohabitans Rax1p XP_018733981.1 1967187 D 796027 CDS AWJ20_4320 30036440 complement(1969550..1971718) C 1 NC_031671.1 RNA polymerase II transcription elongation factor SpELL 1971718 ell1 30036440 ell1 Sugiyamaella lignohabitans RNA polymerase II transcription elongation factor SpELL XP_018733982.1 1969550 R 796027 CDS AWJ20_4321 30036441 complement(1974724..1975791) C 1 NC_031671.1 Putative short-chain dehydrogenase/reductase; YDL114W is not an essential gene; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; short-chain dehydrogenase/reductase 1975791 30036441 AWJ20_4321 Sugiyamaella lignohabitans short-chain dehydrogenase/reductase XP_018733983.1 1974724 R 796027 CDS AWJ20_4322 30036442 complement(1978189..1981404) C 1 NC_031671.1 Histidine kinase osmosensor that regulates a MAP kinase cascade; transmembrane protein with an intracellular kinase domain that signals to Ypd1p and Ssk1p, thereby forming a phosphorelay system similar to bacterial two-component regulators; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0005887 - integral component of plasma membrane [Evidence IDA] [PMID 10198019]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 14665464]; GO_component: GO:0005886 - plasma membrane [Evidence ISS] [PMID 8808622]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0009927 - histidine phosphotransfer kinase activity [Evidence IDA,IMP] [PMID 12455952]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0005034 - osmosensor activity [Evidence IDA] [PMID 12821642]; GO_function: GO:0000156 - phosphorelay response regulator activity [Evidence IEA]; GO_function: GO:0000155 - phosphorelay sensor kinase activity [Evidence IEA]; GO_function: GO:0004673 - protein histidine kinase activity [Evidence IEA]; GO_function: GO:0004673 - protein histidine kinase activity [Evidence IDA] [PMID 8808622]; GO_function: GO:0004871 - signal transducer activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016772 - transferase activity, transferring phosphorus-containing groups [Evidence IEA]; GO_process: GO:0035556 - intracellular signal transduction [Evidence IEA]; GO_process: GO:0006469 - negative regulation of protein kinase activity [Evidence IGI,IMP] [PMID 9482735]; GO_process: GO:0007234 - osmosensory signaling via phosphorelay pathway [Evidence IDA] [PMID 8808622]; GO_process: GO:0018106 - peptidyl-histidine phosphorylation [Evidence IDA] [PMID 8808622]; GO_process: GO:0000160 - phosphorelay signal transduction system [Evidence IEA,IEA]; GO_process: GO:0016310 - phosphorylation [Evidence IEA,IEA]; GO_process: GO:0046777 - protein autophosphorylation [Evidence IDA] [PMID 8808622]; GO_process: GO:0007165 - signal transduction [Evidence IEA]; GO_process: GO:0023014 - signal transduction by phosphorylation [Evidence IEA]; Sln1p 1981404 SLN1 30036442 SLN1 Sugiyamaella lignohabitans Sln1p XP_018733984.1 1978189 R 796027 CDS AWJ20_4324 30036444 1985212..1986825 C 1 NC_031671.1 Putative amidase; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0004040 - amidase activity [Evidence IEA]; GO_function: GO:0004040 - amidase activity [Evidence ISS] [PMID 2263500]; GO_function: GO:0016884 - carbon-nitrogen ligase activity, with glutamine as amido-N-donor [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016811 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides [Evidence IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0008152 - metabolic process [Evidence IEA,IEA,IEA]; Amd2p 1986825 AMD2 30036444 AMD2 Sugiyamaella lignohabitans Amd2p XP_018733985.1 1985212 D 796027 CDS AWJ20_4326 30036446 1989143..1989754 C 1 NC_031671.1 uncharacterized protein 1989754 30036446 AWJ20_4326 Sugiyamaella lignohabitans uncharacterized protein XP_018733986.1 1989143 D 796027 CDS AWJ20_4327 30036447 complement(1989965..1992781) C 1 NC_031671.1 spindle pole body protein Sad1 1992781 sad1 30036447 sad1 Sugiyamaella lignohabitans spindle pole body protein Sad1 XP_018733987.1 1989965 R 796027 CDS AWJ20_4328 30036448 1993816..1995180 C 1 NC_031671.1 uncharacterized protein 1995180 30036448 AWJ20_4328 Sugiyamaella lignohabitans uncharacterized protein XP_018733988.1 1993816 D 796027 CDS AWJ20_4329 30036449 complement(1995398..1998667) C 1 NC_031671.1 Member of an oxysterol-binding protein family; this family has seven members in S. cerevisiae; family members have overlapping, redundant functions in sterol metabolism and collectively perform a function essential for viability; GO_component: GO:0032541 - cortical endoplasmic reticulum [Evidence IDA] [PMID 20008566]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11408574]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_function: GO:0005545 - 1-phosphatidylinositol binding [Evidence ISS] [PMID 11238399]; GO_function: GO:0008289 - lipid binding [Evidence IEA]; GO_function: GO:0008289 - lipid binding [Evidence IDA] [PMID 20008566]; GO_function: GO:0008142 - oxysterol binding [Evidence ISS] [PMID 11238399]; GO_function: GO:0015248 - sterol transporter activity [Evidence IDA] [PMID 20008566]; GO_process: GO:0035621 - ER to Golgi ceramide transport [Evidence IMP] [PMID 24213531]; GO_process: GO:0006897 - endocytosis [Evidence IGI] [PMID 15173322]; GO_process: GO:0006887 - exocytosis [Evidence IGI] [PMID 17004323]; GO_process: GO:0001403 - invasive growth in response to glucose limitation [Evidence IGI] [PMID 12054531]; GO_process: GO:0000742 - karyogamy involved in conjugation with cellular fusion [Evidence IGI] [PMID 12054531]; GO_process: GO:0006869 - lipid transport [Evidence IEA]; GO_process: GO:0030011 - maintenance of cell polarity [Evidence IGI] [PMID 17004323]; GO_process: GO:0010922 - positive regulation of phosphatase activity [Evidence IDA] [PMID 21295699]; GO_process: GO:0007124 - pseudohyphal growth [Evidence IMP] [PMID 12054531]; GO_process: GO:0007124 - pseudohyphal growth [Evidence IMP] [PMID 17082746]; GO_process: GO:0015918 - sterol transport [Evidence IGI,IMP] [PMID 16585271]; GO_process: GO:0015918 - sterol transport [Evidence IDA] [PMID 20008566]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; oxysterol-binding protein related protein OSH3 1998667 OSH3 30036449 OSH3 Sugiyamaella lignohabitans oxysterol-binding protein related protein OSH3 XP_018733989.1 1995398 R 796027 CDS AWJ20_4330 30036451 2000252..2001685 C 1 NC_031671.1 Vacuolar membrane hypothetical protein; is conserved in mammals; predicted to contain eleven transmembrane helices; interacts with Pdr5p, a protein involved in multidrug resistance; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 14562095]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA,IEA]; GO_component: GO:0016020 - membrane [Evidence ISS] [PMID 10637174]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; Tms1p 2001685 TMS1 30036451 TMS1 Sugiyamaella lignohabitans Tms1p XP_018733990.1 2000252 D 796027 CDS AWJ20_4331 30036452 join(2002494..2004681,2004738..2006794) C 1 NC_031671.1 Protein possibly involved in assembly of actin patches; interacts with an actin assembly factor Las17p and with the SH3 domains of Type I myosins Myo3p and Myo5p; localized predominantly to cortical actin patches; GO_component: GO:0030479 - actin cortical patch [Evidence IEA]; GO_component: GO:0030479 - actin cortical patch [Evidence IDA] [PMID 11743162]; GO_component: GO:0030479 - actin cortical patch [Evidence IDA] [PMID 11901111]; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA]; GO_function: GO:0017024 - myosin I binding [Evidence IPI] [PMID 11901111]; GO_process: GO:0030036 - actin cytoskeleton organization [Evidence IGI,IPI] [PMID 11901111]; Bbc1p 2006794 BBC1 30036452 BBC1 Sugiyamaella lignohabitans Bbc1p XP_018733991.1 2002494 D 796027 CDS AWJ20_4332 30036453 2007555..2008709 C 1 NC_031671.1 S-adenosylmethionine synthetase; catalyzes transfer of the adenosyl group of ATP to the sulfur atom of methionine; SAM2 has a paralog, SAM1, that arose from the whole genome duplication; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004478 - methionine adenosyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0004478 - methionine adenosyltransferase activity [Evidence IDA] [PMID 18078345]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006556 - S-adenosylmethionine biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0006556 - S-adenosylmethionine biosynthetic process [Evidence IMP] [PMID 17426150]; GO_process: GO:0006555 - methionine metabolic process [Evidence IMP] [PMID 4585174]; GO_process: GO:0006730 - one-carbon metabolic process [Evidence IEA]; methionine adenosyltransferase SAM2 2008709 SAM2 30036453 SAM2 Sugiyamaella lignohabitans methionine adenosyltransferase SAM2 XP_018733992.1 2007555 D 796027 CDS AWJ20_4333 30036454 2009798..2010586 C 1 NC_031671.1 Bifunctional DRAP deaminase tRNA:pseudouridine synthase; the deaminase catalyzes the third step in riboflavin biosynthesis and the synthase catalyzes formation of pseudouridine at position 32 in cytoplasmic tRNAs; RIB2 has a paralog, PUS9, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence ISM] [PMID 15466869]; GO_function: GO:0043723 - 2,5-diamino-6-ribitylamino-4(3H)-pyrimidinone 5'-phosphate deaminase activity [Evidence IMP] [PMID 4555411]; GO_function: GO:0003723 - RNA binding [Evidence IEA,IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0008835 - diaminohydroxyphosphoribosylaminopyrimidine deaminase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA,IEA]; GO_function: GO:0016853 - isomerase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0009982 - pseudouridine synthase activity [Evidence IEA]; GO_function: GO:0009982 - pseudouridine synthase activity [Evidence IDA,IMP] [PMID 15466869]; GO_function: GO:0009982 - pseudouridine synthase activity [Evidence ISS] [PMID 8710514]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0009451 - RNA modification [Evidence IEA]; GO_process: GO:0001522 - pseudouridine synthesis [Evidence IEA]; GO_process: GO:0009231 - riboflavin biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0009231 - riboflavin biosynthetic process [Evidence IMP] [PMID 4555411]; GO_process: GO:0009231 - riboflavin biosynthetic process [Evidence IMP] [PMID 5366000]; GO_process: GO:0008033 - tRNA processing [Evidence IEA]; GO_process: GO:0031119 - tRNA pseudouridine synthesis [Evidence IDA,IMP] [PMID 15466869]; bifunctional DRAP deaminase/tRNA pseudouridine synthase RIB2 2010586 RIB2 30036454 RIB2 Sugiyamaella lignohabitans bifunctional DRAP deaminase/tRNA pseudouridine synthase RIB2 XP_018733993.1 2009798 D 796027 CDS AWJ20_4334 30036455 2012036..2015407 C 1 NC_031671.1 Karyopherin beta; mediates nuclear import of ribosomal proteins prior to assembly into ribosomes and import of histones H3 and H4; localizes to the nuclear pore, nucleus, and cytoplasm; exhibits genetic interactions with RAI1; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 10684247]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 9238021]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0005643 - nuclear pore [Evidence IEA,IEA]; GO_component: GO:0005643 - nuclear pore [Evidence IDA] [PMID 10684247]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9238021]; GO_function: GO:0008536 - Ran GTPase binding [Evidence IEA]; GO_function: GO:0008139 - nuclear localization sequence binding [Evidence IDA] [PMID 11694505]; GO_function: GO:0008565 - protein transporter activity [Evidence IPI] [PMID 9182759]; GO_function: GO:0008565 - protein transporter activity [Evidence IMP,IPI] [PMID 9321403]; GO_process: GO:0006607 - NLS-bearing protein import into nucleus [Evidence IMP] [PMID 11694505]; GO_process: GO:0006886 - intracellular protein transport [Evidence IEA]; GO_process: GO:0051028 - mRNA transport [Evidence IEA]; GO_process: GO:0006606 - protein import into nucleus [Evidence IMP] [PMID 11352936]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:2000220 - regulation of pseudohyphal growth [Evidence IMP] [PMID 22043304]; GO_process: GO:0006610 - ribosomal protein import into nucleus [Evidence IMP] [PMID 9321403]; GO_process: GO:0006810 - transport [Evidence IEA]; Kap123p 2015407 KAP123 30036455 KAP123 Sugiyamaella lignohabitans Kap123p XP_018733994.1 2012036 D 796027 CDS AWJ20_4335 30036456 2016496..2018064 C 1 NC_031671.1 uncharacterized protein 2018064 30036456 AWJ20_4335 Sugiyamaella lignohabitans uncharacterized protein XP_018733995.1 2016496 D 796027 CDS AWJ20_4336 30036457 2019230..2020396 C 1 NC_031671.1 Mitochondrial ribosomal protein of the large subunit; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0005762 - mitochondrial large ribosomal subunit [Evidence IPI] [PMID 12392552]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA,IEA]; GO_function: GO:0000048 - peptidyltransferase activity [Evidence ISS] [PMID 9445368]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IPI] [PMID 12392552]; GO_process: GO:0032543 - mitochondrial translation [Evidence IC] [PMID 12392552]; GO_process: GO:0006412 - translation [Evidence IEA]; mitochondrial 54S ribosomal protein YmL2 2020396 MRP7 30036457 MRP7 Sugiyamaella lignohabitans mitochondrial 54S ribosomal protein YmL2 XP_018733996.1 2019230 D 796027 CDS AWJ20_4337 30036458 complement(2020594..2022162) C 1 NC_031671.1 Plasma membrane pyridoxine (vitamin B6) transporter; member of the purine-cytosine permease subfamily within the major facilitator superfamily; proton symporter with similarity to Fcy21p, Fcy2p, and Fcy22p; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 12649274]; GO_function: GO:0015205 - nucleobase transmembrane transporter activity [Evidence IEA]; GO_function: GO:0005215 - transporter activity [Evidence IEA]; GO_function: GO:0051183 - vitamin transporter activity [Evidence IDA] [PMID 12649274]; GO_process: GO:0015851 - nucleobase transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; GO_process: GO:0051180 - vitamin transport [Evidence IDA] [PMID 12649274]; Tpn1p 2022162 TPN1 30036458 TPN1 Sugiyamaella lignohabitans Tpn1p XP_018733997.1 2020594 R 796027 CDS AWJ20_4338 30036459 complement(2022990..2024594) C 1 NC_031671.1 uncharacterized protein 2024594 30036459 AWJ20_4338 Sugiyamaella lignohabitans uncharacterized protein XP_018733998.1 2022990 R 796027 CDS AWJ20_4339 30036460 complement(2024998..2025672) C 1 NC_031671.1 UDP-glucose-4-epimerase; catalyzes the interconversion of UDP-galactose and UDP-D-glucose in galactose metabolism; also catalyzes the conversion of alpha-D-glucose or alpha-D-galactose to their beta-anomers; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 14764091]; GO_function: GO:0003978 - UDP-glucose 4-epimerase activity [Evidence IEA,IEA]; GO_function: GO:0003978 - UDP-glucose 4-epimerase activity [Evidence IMP] [PMID 14158615]; GO_function: GO:0003978 - UDP-glucose 4-epimerase activity [Evidence IDA] [PMID 14764091]; GO_function: GO:0004034 - aldose 1-epimerase activity [Evidence IEA]; GO_function: GO:0004034 - aldose 1-epimerase activity [Evidence IDA] [PMID 14764091]; GO_function: GO:0030246 - carbohydrate binding [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA,IEA]; GO_function: GO:0050662 - coenzyme binding [Evidence IEA]; GO_function: GO:0016853 - isomerase activity [Evidence IEA,IEA]; GO_process: GO:0005975 - carbohydrate metabolic process [Evidence IEA,IEA]; GO_process: GO:0044237 - cellular metabolic process [Evidence IEA]; GO_process: GO:0033499 - galactose catabolic process via UDP-galactose [Evidence IMP] [PMID 14158615]; GO_process: GO:0033499 - galactose catabolic process via UDP-galactose [Evidence IDA] [PMID 14764091]; GO_process: GO:0006012 - galactose metabolic process [Evidence IEA,IEA,IEA]; GO_process: GO:0019318 - hexose metabolic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; bifunctional UDP-glucose 4-epimerase/aldose 1-epimerase 2025672 GAL10 30036460 GAL10 Sugiyamaella lignohabitans bifunctional UDP-glucose 4-epimerase/aldose 1-epimerase XP_018733999.1 2024998 R 796027 CDS AWJ20_4340 30036462 2028562..2030778 C 1 NC_031671.1 Coactivator, regulates transcription of ribosomal protein (RP) genes; recruited to RP gene promoters during optimal growth conditions via Fhl1p; subunit of CURI, a complex that coordinates RP production and pre-rRNA processing; regulated by acetylation and phosphorylation at different growth states via TORC1 signaling; IFH1 has a paralog, CRF1, that arose from the whole genome duplication; GO_component: GO:0032545 - CURI complex [Evidence IDA] [PMID 17452446]; GO_component: GO:0000790 - nuclear chromatin [Evidence IDA] [PMID 15620355]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 15466158]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 15466158]; GO_function: GO:0003713 - transcription coactivator activity [Evidence IGI,IMP] [PMID 15620355]; GO_process: GO:0006348 - chromatin silencing at telomere [Evidence IMP] [PMID 9755194]; GO_process: GO:0060963 - positive regulation of ribosomal protein gene transcription from RNA polymerase II promoter [Evidence IMP] [PMID 15616569]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Ifh1p 2030778 IFH1 30036462 IFH1 Sugiyamaella lignohabitans Ifh1p XP_018734000.1 2028562 D 796027 CDS AWJ20_4341 30036463 complement(2031101..2032018) C 1 NC_031671.1 uncharacterized protein 2032018 30036463 AWJ20_4341 Sugiyamaella lignohabitans uncharacterized protein XP_018734001.1 2031101 R 796027 CDS AWJ20_4342 30036464 complement(2032429..2037639) C 1 NC_031671.1 serine/threonine-protein kinase GCN2 2037639 GCN2 30036464 GCN2 Sugiyamaella lignohabitans serine/threonine-protein kinase GCN2 XP_018734002.1 2032429 R 796027 CDS AWJ20_4343 30036465 2043163..2044626 C 1 NC_031671.1 similar to Aspergillus flavus NRRL3357 XP_002376764.1; histidine acid phosphatase, putative 2044626 30036465 AWJ20_4343 Sugiyamaella lignohabitans histidine acid phosphatase, putative XP_018734003.1 2043163 D 796027 CDS AWJ20_4344 30036466 2044980..2046533 C 1 NC_031671.1 Nuclear export factor for the ribosomal pre-60S subunit; shuttling factor which directly binds FG rich nucleoporins and facilities translocation through the nuclear pore complex; interacts directly with Alb1p; responsible for Tif6p recycling defects in the absence of Rei1; associated with the ribosomal export complex; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 12374754]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 16648468]; GO_component: GO:0022625 - cytosolic large ribosomal subunit [Evidence IDA] [PMID 16648468]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 16648468]; GO_component: GO:0005654 - nucleoplasm [Evidence IDA] [PMID 12374754]; GO_component: GO:0005654 - nucleoplasm [Evidence IDA] [PMID 16648468]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 16648468]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 16648468]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 23212245]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0008237 - metallopeptidase activity [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_process: GO:0006508 - proteolysis [Evidence IEA]; GO_process: GO:0000055 - ribosomal large subunit export from nucleus [Evidence IMP] [PMID 16648468]; GO_process: GO:0000055 - ribosomal large subunit export from nucleus [Evidence IGI] [PMID 17803941]; GO_process: GO:0000055 - ribosomal large subunit export from nucleus [Evidence IGI,IMP] [PMID 18077551]; Arx1p 2046533 ARX1 30036466 ARX1 Sugiyamaella lignohabitans Arx1p XP_018734004.1 2044980 D 796027 CDS AWJ20_4345 30036467 2048221..2049789 C 1 NC_031671.1 SAGA complex subunit; has a role in anchoring the deubiquitination module into SAGA and SLIK complexes; involved in preinitiation complex assembly at promoters; relocalizes to the cytosol in response to hypoxia; human ortholog ataxin-7 is associated with spinocerebellar ataxia diseases; mutant displays reduced transcription elongation in the G-less-based run-on (GLRO) assay; GO_component: GO:0071819 - DUBm complex [Evidence IDA] [PMID 20395473]; GO_component: GO:0000124 - SAGA complex [Evidence IDA] [PMID 12052880]; GO_component: GO:0000124 - SAGA complex [Evidence IPI] [PMID 15932941]; GO_component: GO:0000124 - SAGA complex [Evidence IDA] [PMID 17090597]; GO_component: GO:0046695 - SLIK (SAGA-like) complex [Evidence IPI] [PMID 15932941]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 22932476]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22932476]; GO_function: GO:0008047 - enzyme activator activity [Evidence IDA] [PMID 18488019]; GO_function: GO:0008047 - enzyme activator activity [Evidence IMP] [PMID 20434206]; GO_function: GO:0004402 - histone acetyltransferase activity [Evidence IMP] [PMID 15932941]; GO_function: GO:0005198 - structural molecule activity [Evidence IGI,IMP] [PMID 15932941]; GO_process: GO:0016568 - chromatin modification [Evidence IMP] [PMID 15932941]; GO_process: GO:0016568 - chromatin modification [Evidence IMP] [PMID 17090597]; GO_process: GO:0016573 - histone acetylation [Evidence IPI] [PMID 12052880]; GO_process: GO:0016573 - histone acetylation [Evidence IMP] [PMID 15932941]; GO_process: GO:0016578 - histone deubiquitination [Evidence IMP] [PMID 19226466]; GO_process: GO:0006406 - mRNA export from nucleus [Evidence IMP] [PMID 18488019]; GO_process: GO:0045899 - positive regulation of RNA polymerase II transcriptional preinitiation complex assembly [Evidence IMP] [PMID 17090597]; GO_process: GO:0006461 - protein complex assembly [Evidence IMP] [PMID 19226466]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Sgf73p 2049789 SGF73 30036467 SGF73 Sugiyamaella lignohabitans Sgf73p XP_018734005.1 2048221 D 796027 CDS AWJ20_4346 30036468 2054333..2055151 C 1 NC_031671.1 14-3-3 protein, minor isoform; controls proteome at post-transcriptional level, binds proteins and DNA, involved in regulation of many processes including exocytosis, vesicle transport, Ras/MAPK signaling, and rapamycin-sensitive signaling; protein increases in abundance and relative distribution to the nucleus increases upon DNA replication stress; BMH2 has a paralog, BMH1, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 12167636]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 16622836]; GO_function: GO:0003688 - DNA replication origin binding [Evidence IDA] [PMID 12167636]; GO_function: GO:0050815 - phosphoserine binding [Evidence IMP] [PMID 9822578]; GO_function: GO:0019904 - protein domain specific binding [Evidence IEA]; GO_process: GO:0000077 - DNA damage checkpoint [Evidence IMP] [PMID 14704161]; GO_process: GO:0006270 - DNA replication initiation [Evidence IGI] [PMID 19934224]; GO_process: GO:0007265 - Ras protein signal transduction [Evidence IGI] [PMID 9215628]; GO_process: GO:0030437 - ascospore formation [Evidence IGI] [PMID 9215628]; GO_process: GO:0034221 - fungal-type cell wall chitin biosynthetic process [Evidence IGI] [PMID 17559233]; GO_process: GO:0005977 - glycogen metabolic process [Evidence IGI] [PMID 9215628]; GO_process: GO:0043066 - negative regulation of apoptotic process [Evidence IMP] [PMID 22785534]; GO_process: GO:0051436 - negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle [Evidence IPI] [PMID 17030612]; GO_process: GO:0006267 - pre-replicative complex assembly involved in nuclear cell cycle DNA replication [Evidence IGI] [PMID 19934224]; GO_process: GO:0007124 - pseudohyphal growth [Evidence IGI] [PMID 9215628]; GO_process: GO:0001402 - signal transduction involved in filamentous growth [Evidence IGI] [PMID 9215628]; 14-3-3 family protein BMH2 2055151 BMH2 30036468 BMH2 Sugiyamaella lignohabitans 14-3-3 family protein BMH2 XP_018734006.1 2054333 D 796027 CDS AWJ20_4347 30036469 2057461..2058477 C 1 NC_031671.1 G-protein beta subunit and guanine dissociation inhibitor for Gpa2p; ortholog of RACK1 that inhibits translation; core component of the small (40S) ribosomal subunit; regulates P-body formation induced by replication stress; represses Gcn4p in the absence of amino acid starvation; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0022627 - cytosolic small ribosomal subunit [Evidence IDA] [PMID 15340087]; GO_function: GO:0001965 - G-protein alpha-subunit binding [Evidence IPI] [PMID 17591772]; GO_function: GO:0005092 - GDP-dissociation inhibitor activity [Evidence IDA] [PMID 17591772]; GO_function: GO:0004871 - signal transducer activity [Evidence IMP,IPI] [PMID 17591772]; GO_process: GO:0007186 - G-protein coupled receptor signaling pathway [Evidence IMP,IPI] [PMID 17591772]; GO_process: GO:0010255 - glucose mediated signaling pathway [Evidence IMP,IPI] [PMID 17591772]; GO_process: GO:0001403 - invasive growth in response to glucose limitation [Evidence IMP] [PMID 17591772]; GO_process: GO:0017148 - negative regulation of translation [Evidence IMP] [PMID 15340087]; guanine nucleotide-binding protein subunit beta 2058477 ASC1 30036469 ASC1 Sugiyamaella lignohabitans guanine nucleotide-binding protein subunit beta XP_018734007.1 2057461 D 796027 CDS AWJ20_4348 30036470 complement(2058719..2060212) C 1 NC_031671.1 top hit is XP_002839470.1 originated in Tuber melanosporum Mel28; conserved fungal protein; uncharacterized protein 2060212 tam14 30036470 tam14 Sugiyamaella lignohabitans uncharacterized protein XP_018734008.1 2058719 R 796027 CDS AWJ20_4349 30036471 2060611..2061657 C 1 NC_031671.1 One of several homologs of bacterial chaperone DnaJ; located in the ER lumen where it cooperates with Kar2p to mediate maturation of proteins; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005788 - endoplasmic reticulum lumen [Evidence IEA]; GO_component: GO:0005788 - endoplasmic reticulum lumen [Evidence IDA] [PMID 7744969]; GO_function: GO:0051087 - chaperone binding [Evidence IMP,ISS] [PMID 9817751]; GO_function: GO:0031072 - heat shock protein binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0051082 - unfolded protein binding [Evidence IEA]; GO_process: GO:0030433 - ER-associated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 11381090]; GO_process: GO:0006457 - protein folding [Evidence IEA]; GO_process: GO:0034975 - protein folding in endoplasmic reticulum [Evidence IMP] [PMID 9817751]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006986 - response to unfolded protein [Evidence IMP] [PMID 9817751]; GO_process: GO:0006810 - transport [Evidence IEA]; Scj1p 2061657 SCJ1 30036471 SCJ1 Sugiyamaella lignohabitans Scj1p XP_018734009.1 2060611 D 796027 CDS AWJ20_4350 30036473 complement(2061855..2062805) C 1 NC_031671.1 Efm3p 2062805 30036473 AWJ20_4350 Sugiyamaella lignohabitans Efm3p XP_018734010.1 2061855 R 796027 CDS AWJ20_4351 30036474 2065489..2066967 C 1 NC_031671.1 Delta(9) fatty acid desaturase; required for monounsaturated fatty acid synthesis and for normal distribution of mitochondria; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA,IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0030176 - integral component of endoplasmic reticulum membrane [Evidence IDA] [PMID 12475963]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_function: GO:0009055 - electron carrier activity [Evidence IGI,ISA] [PMID 8530368]; GO_function: GO:0020037 - heme binding [Evidence IEA]; GO_function: GO:0005506 - iron ion binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0016717 - oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water [Evidence IEA]; GO_function: GO:0004768 - stearoyl-CoA 9-desaturase activity [Evidence IEA,IEA]; GO_function: GO:0004768 - stearoyl-CoA 9-desaturase activity [Evidence IMP,ISS] [PMID 1978720]; GO_process: GO:0006633 - fatty acid biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0006631 - fatty acid metabolic process [Evidence IEA]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA,IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0006636 - unsaturated fatty acid biosynthetic process [Evidence IMP,ISS] [PMID 1978720]; stearoyl-CoA 9-desaturase 2066967 OLE1 30036474 OLE1 Sugiyamaella lignohabitans stearoyl-CoA 9-desaturase XP_018734011.1 2065489 D 796027 CDS AWJ20_4352 30036475 2068017..2068775 C 1 NC_031671.1 Bifunctional dehydrogenase and ferrochelatase; involved in the biosynthesis of siroheme, a prosthetic group used by sulfite reductase; required for sulfate assimilation and methionine biosynthesis; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0004325 - ferrochelatase activity [Evidence IDA] [PMID 11980703]; GO_function: GO:0016829 - lyase activity [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0043115 - precorrin-2 dehydrogenase activity [Evidence IEA,IEA]; GO_function: GO:0043115 - precorrin-2 dehydrogenase activity [Evidence IDA] [PMID 10051442]; GO_function: GO:0043115 - precorrin-2 dehydrogenase activity [Evidence IDA] [PMID 11980703]; GO_function: GO:0051266 - sirohydrochlorin ferrochelatase activity [Evidence IEA]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0009086 - methionine biosynthetic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0006779 - porphyrin-containing compound biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0019354 - siroheme biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0019354 - siroheme biosynthetic process [Evidence IMP] [PMID 9003798]; GO_process: GO:0000103 - sulfate assimilation [Evidence IMP] [PMID 10051442]; bifunctional precorrin-2 dehydrogenase/sirohydrochlorin ferrochelatase MET8 2068775 MET8 30036475 MET8 Sugiyamaella lignohabitans bifunctional precorrin-2 dehydrogenase/sirohydrochlorin ferrochelatase MET8 XP_018734012.1 2068017 D 796027 CDS AWJ20_4353 30036476 complement(2071121..2072368) C 1 NC_031671.1 Essential protein required for the accumulation of box C/D snoRNA; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14690591]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence NAS] [PMID 12837249]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; GO_process: GO:0016074 - snoRNA metabolic process [Evidence IMP] [PMID 12837249]; Bcd1p 2072368 BCD1 30036476 BCD1 Sugiyamaella lignohabitans Bcd1p XP_018734013.1 2071121 R 796027 CDS AWJ20_4354 30036477 2074720..2076501 C 1 NC_031671.1 hypothetical protein; green fluorescent protein (GFP)-fusion protein localizes to the endoplasmic reticulum; msc7 mutants are defective in directing meiotic recombination events to homologous chromatids; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA,IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 14562095]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0016620 - oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0007131 - reciprocal meiotic recombination [Evidence IMP] [PMID 10511544]; Msc7p 2076501 MSC7 30036477 MSC7 Sugiyamaella lignohabitans Msc7p XP_018734014.1 2074720 D 796027 CDS AWJ20_4355 30036478 complement(2076751..2077491) C 1 NC_031671.1 Mitochondrial ribosome recycling factor; essential for mitochondrial protein synthesis and for the maintenance of the respiratory function of mitochondria; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 12853640]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0003747 - translation release factor activity [Evidence ISO] [PMID 9746366]; GO_process: GO:0032543 - mitochondrial translation [Evidence IMP] [PMID 12853640]; GO_process: GO:0006412 - translation [Evidence IEA,IEA]; Rrf1p 2077491 RRF1 30036478 RRF1 Sugiyamaella lignohabitans Rrf1p XP_018734015.1 2076751 R 796027 CDS AWJ20_4356 30036479 2079043..2079711 C 1 NC_031671.1 Ribosomal 60S subunit protein L10; responsible for joining the 40S and 60S subunits; regulates translation initiation; similar to members of the QM gene family; homologous to mammalian ribosomal protein L10 and bacterial L16; protein abundance increases in response to DNA replication stress; mutations in the human ortholog are associated with development of T-cell acute lymphoblastic leukemia and similar changes in the yeast gene result in ribosome biogenesis defects; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0022625 - cytosolic large ribosomal subunit [Evidence IDA] [PMID 11983894]; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA,IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IC] [PMID 11983894]; GO_process: GO:0002181 - cytoplasmic translation [Evidence IC] [PMID 11983894]; GO_process: GO:0000027 - ribosomal large subunit assembly [Evidence IMP] [PMID 18824477]; GO_process: GO:0000027 - ribosomal large subunit assembly [Evidence IMP] [PMID 9580698]; GO_process: GO:0006412 - translation [Evidence IEA]; GO_process: GO:0006415 - translational termination [Evidence IMP] [PMID 18824477]; ribosomal 60S subunit protein L10 2079711 RPL10 30036479 RPL10 Sugiyamaella lignohabitans ribosomal 60S subunit protein L10 XP_018734016.1 2079043 D 796027 CDS AWJ20_4358 30036481 2081839..2083404 C 1 NC_031671.1 hypothetical protein; mutant sensitive to 6-azauracil (6AU) and mycophenolic acid (MPA); GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; Dlt1p 2083404 DLT1 30036481 DLT1 Sugiyamaella lignohabitans Dlt1p XP_018734017.1 2081839 D 796027 CDS AWJ20_4359 30036482 complement(2083659..2085212) C 1 NC_031671.1 Epsin-like protein required for endocytosis and actin patch assembly; functionally redundant with Ent1p; contains clathrin-binding motif at C-terminus; ENT2 has a paralog, ENT1, that arose from the whole genome duplication; GO_component: GO:0030479 - actin cortical patch [Evidence TAS] [PMID 10652251]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 19053807]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_function: GO:0030276 - clathrin binding [Evidence TAS] [PMID 12461563]; GO_function: GO:0008289 - lipid binding [Evidence IEA]; GO_process: GO:0000147 - actin cortical patch assembly [Evidence IMP] [PMID 10449404]; GO_process: GO:0007015 - actin filament organization [Evidence IMP] [PMID 10449404]; GO_process: GO:0006897 - endocytosis [Evidence IEA]; GO_process: GO:0006897 - endocytosis [Evidence IMP] [PMID 10449404]; Ent2p 2085212 ENT2 30036482 ENT2 Sugiyamaella lignohabitans Ent2p XP_018734018.1 2083659 R 796027 CDS AWJ20_4360 30036484 2088253..2088792 C 1 NC_031671.1 protein AIM2 2088792 AIM2 30036484 AIM2 Sugiyamaella lignohabitans protein AIM2 XP_018734019.1 2088253 D 796027 CDS AWJ20_4361 30036485 2091163..2092527 C 1 NC_031671.1 Putative mannosidase; GPI-anchored membrane protein required for cell wall biosynthesis in bud formation;homologous to Dfg5p; GO_component: GO:0031225 - anchored component of membrane [Evidence IEA]; GO_component: GO:0046658 - anchored component of plasma membrane [Evidence IDA] [PMID 12421307]; GO_component: GO:0005933 - cellular bud [Evidence IDA] [PMID 14562095]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 14562095]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016798 - hydrolase activity, acting on glycosyl bonds [Evidence IEA]; GO_function: GO:0008496 - mannan endo-1,6-alpha-mannosidase activity [Evidence IEA,IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0007117 - budding cell bud growth [Evidence IGI] [PMID 15470258]; GO_process: GO:0016052 - carbohydrate catabolic process [Evidence IEA]; GO_process: GO:0009272 - fungal-type cell wall biogenesis [Evidence IDA] [PMID 12421307]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; Dcw1p 2092527 DCW1 30036485 DCW1 Sugiyamaella lignohabitans Dcw1p XP_018734020.1 2091163 D 796027 CDS AWJ20_4362 30036486 complement(2093419..2094780) C 1 NC_031671.1 Putative mannosidase; GPI-anchored membrane protein required for cell wall biosynthesis in bud formation;homologous to Dfg5p; GO_component: GO:0031225 - anchored component of membrane [Evidence IEA]; GO_component: GO:0046658 - anchored component of plasma membrane [Evidence IDA] [PMID 12421307]; GO_component: GO:0005933 - cellular bud [Evidence IDA] [PMID 14562095]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 14562095]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016798 - hydrolase activity, acting on glycosyl bonds [Evidence IEA]; GO_function: GO:0008496 - mannan endo-1,6-alpha-mannosidase activity [Evidence IEA,IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0007117 - budding cell bud growth [Evidence IGI] [PMID 15470258]; GO_process: GO:0016052 - carbohydrate catabolic process [Evidence IEA]; GO_process: GO:0009272 - fungal-type cell wall biogenesis [Evidence IDA] [PMID 12421307]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; Dcw1p 2094780 DCW1 30036486 DCW1 Sugiyamaella lignohabitans Dcw1p XP_018734021.1 2093419 R 796027 CDS AWJ20_4364 30036488 complement(2096672..2098993) C 1 NC_031671.1 spindle pole body protein Ppc89 2098993 ppc89 30036488 ppc89 Sugiyamaella lignohabitans spindle pole body protein Ppc89 XP_018734022.1 2096672 R 796027 CDS AWJ20_4365 30036489 2099500..2100213 C 1 NC_031671.1 Major orotate phosphoribosyltransferase (OPRTase) isozyme; catalyzes the fifth enzymatic step in de novo biosynthesis of pyrimidines, converting orotate into orotidine-5'-phosphate; URA5 has a paralog, URA10, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0004588 - orotate phosphoribosyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0004588 - orotate phosphoribosyltransferase activity [Evidence IMP] [PMID 4550660]; GO_function: GO:0004588 - orotate phosphoribosyltransferase activity [Evidence IDA] [PMID 9882434]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA]; GO_process: GO:0044205 - 'de novo' UMP biosynthetic process [Evidence IEA]; GO_process: GO:0006207 - 'de novo' pyrimidine nucleobase biosynthetic process [Evidence IMP] [PMID 4550660]; GO_process: GO:0009116 - nucleoside metabolic process [Evidence IEA]; GO_process: GO:0006221 - pyrimidine nucleotide biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0046132 - pyrimidine ribonucleoside biosynthetic process [Evidence IMP] [PMID 4550660]; GO_process: GO:0046132 - pyrimidine ribonucleoside biosynthetic process [Evidence IDA] [PMID 9882434]; orotate phosphoribosyltransferase URA5 2100213 URA5 30036489 URA5 Sugiyamaella lignohabitans orotate phosphoribosyltransferase URA5 XP_018734023.1 2099500 D 796027 CDS AWJ20_4366 30036490 2102663..2104201 C 1 NC_031671.1 acetylglucosaminyltransferase (predicted) 2104201 mug136 30036490 mug136 Sugiyamaella lignohabitans acetylglucosaminyltransferase (predicted) XP_018734024.1 2102663 D 796027 CDS AWJ20_4367 30036491 complement(2104394..2105257) C 1 NC_031671.1 Subunit of the signal recognition particle (SRP); involved in protein targeting to the ER; interacts with Srp54p; homolog of mammalian SRP19; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0048500 - signal recognition particle [Evidence IEA]; GO_component: GO:0005786 - signal recognition particle, endoplasmic reticulum targeting [Evidence IEA]; GO_component: GO:0005786 - signal recognition particle, endoplasmic reticulum targeting [Evidence IDA] [PMID 1313947]; GO_component: GO:0005786 - signal recognition particle, endoplasmic reticulum targeting [Evidence IMP,ISS] [PMID 1313948]; GO_function: GO:0008312 - 7S RNA binding [Evidence IEA]; GO_function: GO:0008312 - 7S RNA binding [Evidence IDA] [PMID 14681587]; GO_process: GO:0006614 - SRP-dependent cotranslational protein targeting to membrane [Evidence IEA]; GO_process: GO:0006617 - SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition [Evidence IMP] [PMID 1313947]; GO_process: GO:0045047 - protein targeting to ER [Evidence IMP] [PMID 1313948]; Sec65p 2105257 SEC65 30036491 SEC65 Sugiyamaella lignohabitans Sec65p XP_018734025.1 2104394 R 796027 CDS AWJ20_4368 30036492 complement(2109154..2109843) C 1 NC_031671.1 protein channel TOM71 2109843 TOM71 30036492 TOM71 Sugiyamaella lignohabitans protein channel TOM71 XP_018734026.1 2109154 R 796027 CDS AWJ20_4369 30036493 complement(2110210..2111316) C 1 NC_031671.1 Sphingolipid alpha-hydroxylase; functions in the alpha-hydroxylation of sphingolipid-associated very long chain fatty acids, has both cytochrome b5-like and hydroxylase/desaturase domains, not essential for growth; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA,IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 14562095]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence ISS] [PMID 9353282]; GO_function: GO:0080132 - fatty acid alpha-hydroxylase activity [Evidence IMP] [PMID 9353282]; GO_function: GO:0080132 - fatty acid alpha-hydroxylase activity [Evidence IMP] [PMID 9559540]; GO_function: GO:0020037 - heme binding [Evidence IEA]; GO_function: GO:0005506 - iron ion binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_process: GO:0006633 - fatty acid biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0006631 - fatty acid metabolic process [Evidence IEA]; GO_process: GO:0006673 - inositolphosphoceramide metabolic process [Evidence IMP] [PMID 16652392]; GO_process: GO:0006673 - inositolphosphoceramide metabolic process [Evidence IMP] [PMID 9353282]; GO_process: GO:0006673 - inositolphosphoceramide metabolic process [Evidence IMP] [PMID 9368039]; GO_process: GO:0006673 - inositolphosphoceramide metabolic process [Evidence IGI,IMP] [PMID 9559540]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0006665 - sphingolipid metabolic process [Evidence IEA]; fatty acid alpha-hydroxylase 2111316 SCS7 30036493 SCS7 Sugiyamaella lignohabitans fatty acid alpha-hydroxylase XP_018734027.1 2110210 R 796027 CDS AWJ20_4371 30036496 2113234..2113947 C 1 NC_031671.1 Ornithine transporter of the mitochondrial inner membrane 2113947 30036496 AWJ20_4371 Sugiyamaella lignohabitans Ornithine transporter of the mitochondrial inner membrane XP_018734028.1 2113234 D 796027 CDS AWJ20_4372 30036497 2115570..2116118 C 1 NC_031671.1 Allantoate permease; ureidosuccinate permease; also transports dipeptides, though with lower affinity than for allantoate and ureidosuccinate; expression is constitutive but sensitive to nitrogen catabolite repression; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IMP,ISS] [PMID 3275614]; GO_function: GO:0015124 - allantoate transmembrane transporter activity [Evidence IMP,ISS] [PMID 3275614]; GO_function: GO:0042936 - dipeptide transporter activity [Evidence IMP] [PMID 16429164]; GO_function: GO:0042936 - dipeptide transporter activity [Evidence IGI,IMP] [PMID 17693598]; GO_function: GO:0005215 - transporter activity [Evidence IEA]; GO_process: GO:0015719 - allantoate transport [Evidence IMP] [PMID 3275614]; GO_process: GO:0042938 - dipeptide transport [Evidence IMP] [PMID 16429164]; GO_process: GO:0042938 - dipeptide transport [Evidence IGI,IMP] [PMID 17693598]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; GO_process: GO:0042939 - tripeptide transport [Evidence IMP] [PMID 16429164]; allantoate permease 2116118 DAL5 30036497 DAL5 Sugiyamaella lignohabitans allantoate permease XP_018734029.1 2115570 D 796027 CDS AWJ20_4373 30036498 2116563..2117369 C 1 NC_031671.1 Putative plasma membrane permease; proposed to be involved in carboxylic acid uptake and repressed by thiamine; substrate of Dbf2p/Mob1p kinase; transcription is altered if mitochondrial dysfunction occurs; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 16850348]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISS] [PMID 10869563]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_function: GO:0005215 - transporter activity [Evidence ISS] [PMID 10869563]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence ISS] [PMID 10869563]; Thi73p 2117369 THI73 30036498 THI73 Sugiyamaella lignohabitans Thi73p XP_018734030.1 2116563 D 796027 CDS AWJ20_4374 30036499 2119348..2120598 C 1 NC_031671.1 uncharacterized protein 2120598 30036499 AWJ20_4374 Sugiyamaella lignohabitans uncharacterized protein XP_018734031.1 2119348 D 796027 CDS AWJ20_4375 30036500 complement(2123358..2124776) C 1 NC_031671.1 NADH-ubiquinone oxidoreductase subunit, mitochondrial precursor 2124776 30036500 AWJ20_4375 Sugiyamaella lignohabitans NADH-ubiquinone oxidoreductase subunit, mitochondrial precursor XP_018734032.1 2123358 R 796027 CDS AWJ20_4376 30036501 complement(2126849..2128852) C 1 NC_031671.1 uncharacterized protein 2128852 30036501 AWJ20_4376 Sugiyamaella lignohabitans uncharacterized protein XP_018734033.1 2126849 R 796027 CDS AWJ20_4377 30036502 2138045..2138467 C 1 NC_031671.1 potential mitochondrial NADH-ubiquinone oxidoreductase complex I,17.2 kD subunit; similar to N. crassa orf (CAD21387); allele of CaO19.1625; putative mitochondrial Complex I, 17.2 kd subunit 2138467 30036502 AWJ20_4377 Sugiyamaella lignohabitans putative mitochondrial Complex I, 17.2 kd subunit XP_018734034.1 2138045 D 796027 CDS AWJ20_4378 30036503 complement(2138712..2139812) C 1 NC_031671.1 Deoxyhypusine synthase; catalyzes formation of deoxyhypusine, the first step in hypusine biosynthesis; triggers posttranslational hypusination of translation elongation factor eIF-5A and regulates its intracellular levels; tetrameric; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0034038 - deoxyhypusine synthase activity [Evidence IEA]; GO_function: GO:0034038 - deoxyhypusine synthase activity [Evidence IDA] [PMID 7629166]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0050983 - deoxyhypusine biosynthetic process from spermidine [Evidence IEA]; GO_process: GO:0008612 - peptidyl-lysine modification to peptidyl-hypusine [Evidence IEA,IEA]; GO_process: GO:0008612 - peptidyl-lysine modification to peptidyl-hypusine [Evidence IDA] [PMID 7629166]; Dys1p 2139812 DYS1 30036503 DYS1 Sugiyamaella lignohabitans Dys1p XP_018734035.1 2138712 R 796027 CDS AWJ20_4379 30036504 2140654..2141421 C 1 NC_031671.1 Adenylate kinase, required for purine metabolism; localized to the cytoplasm and the mitochondria; lacks cleavable signal sequence; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 2850178]; GO_component: GO:0005829 - cytosol [Evidence IEA]; GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IEA]; GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IDA] [PMID 2850178]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004017 - adenylate kinase activity [Evidence IEA,IEA]; GO_function: GO:0004017 - adenylate kinase activity [Evidence IDA] [PMID 15753074]; GO_function: GO:0004017 - adenylate kinase activity [Evidence IDA,IMP] [PMID 18433446]; GO_function: GO:0004017 - adenylate kinase activity [Evidence IMP] [PMID 2850178]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0019205 - nucleobase-containing compound kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016776 - phosphotransferase activity, phosphate group as acceptor [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006172 - ADP biosynthetic process [Evidence IEA]; GO_process: GO:0006172 - ADP biosynthetic process [Evidence IDA] [PMID 2848829]; GO_process: GO:0006270 - DNA replication initiation [Evidence IMP] [PMID 20980819]; GO_process: GO:0006139 - nucleobase-containing compound metabolic process [Evidence IEA]; GO_process: GO:0009117 - nucleotide metabolic process [Evidence IMP] [PMID 2850178]; GO_process: GO:0046939 - nucleotide phosphorylation [Evidence IEA,IEA]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; adenylate kinase ADK1 2141421 ADK1 30036504 ADK1 Sugiyamaella lignohabitans adenylate kinase ADK1 XP_018734036.1 2140654 D 796027 CDS AWJ20_4380 30036506 complement(2141698..2143314) C 1 NC_031671.1 mRNA 3' end processing factor; essential component of cleavage and polyadenylation factor IA (CF IA), involved in pre-mRNA 3' end processing and in transcription termination; binds C-terminal domain of largest subunit of RNA pol II (Rpo21p); required for gene looping; relocalizes to the cytosol in response to hypoxia; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 22932476]; GO_component: GO:0005849 - mRNA cleavage factor complex [Evidence IPI] [PMID 11344258]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22932476]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0000993 - RNA polymerase II core binding [Evidence IDA] [PMID 12727883]; GO_function: GO:0000993 - RNA polymerase II core binding [Evidence IMP,IPI] [PMID 15998810]; GO_function: GO:0003729 - mRNA binding [Evidence IDA,IMP] [PMID 15998810]; GO_process: GO:0006353 - DNA-templated transcription, termination [Evidence IEA]; GO_process: GO:0006379 - mRNA cleavage [Evidence IDA] [PMID 11344258]; GO_process: GO:0006378 - mRNA polyadenylation [Evidence IDA] [PMID 11344258]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006369 - termination of RNA polymerase II transcription [Evidence IDA] [PMID 12727883]; GO_process: GO:0006369 - termination of RNA polymerase II transcription [Evidence IDA,IMP] [PMID 15998810]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Pcf11p 2143314 PCF11 30036506 PCF11 Sugiyamaella lignohabitans Pcf11p XP_018734037.1 2141698 R 796027 CDS AWJ20_4381 30036507 complement(2143721..2144047) C 1 NC_031671.1 mRNA 3' end processing factor 2144047 30036507 AWJ20_4381 Sugiyamaella lignohabitans mRNA 3' end processing factor XP_018734038.1 2143721 R 796027 CDS AWJ20_4382 30036508 2146078..2146872 C 1 NC_031671.1 Mitochondrial GTP/GDP transporter; essential for mitochondrial genome maintenance; has a role in mitochondrial iron transport; member of the mitochondrial carrier family; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence ISS] [PMID 10930523]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0001409 - guanine nucleotide transmembrane transporter activity [Evidence IDA] [PMID 14998997]; GO_process: GO:0006879 - cellular iron ion homeostasis [Evidence IMP] [PMID 14629196]; GO_process: GO:0001408 - guanine nucleotide transport [Evidence IDA] [PMID 14998997]; GO_process: GO:0000002 - mitochondrial genome maintenance [Evidence IMP] [PMID 14998997]; GO_process: GO:0000002 - mitochondrial genome maintenance [Evidence IGI] [PMID 8905928]; GO_process: GO:0055085 - transmembrane transport [Evidence IDA] [PMID 14998997]; GO_process: GO:0006810 - transport [Evidence IEA]; Ggc1p 2146872 GGC1 30036508 GGC1 Sugiyamaella lignohabitans Ggc1p XP_018734039.1 2146078 D 796027 CDS AWJ20_4383 30036509 2147349..2150264 C 1 NC_031671.1 mRNA-binding protein PUF3 2150264 PUF3 30036509 PUF3 Sugiyamaella lignohabitans mRNA-binding protein PUF3 XP_018734040.1 2147349 D 796027 CDS AWJ20_4384 30036510 2167450..2168505 C 1 NC_031671.1 uncharacterized protein 2168505 30036510 AWJ20_4384 Sugiyamaella lignohabitans uncharacterized protein XP_018734041.1 2167450 D 796027 CDS AWJ20_4385 30036511 complement(2168658..2169659) C 1 NC_031671.1 uncharacterized protein 2169659 30036511 AWJ20_4385 Sugiyamaella lignohabitans uncharacterized protein XP_018734042.1 2168658 R 796027 CDS AWJ20_4386 30036512 2170379..2170669 C 1 NC_031671.1 uncharacterized protein 2170669 30036512 AWJ20_4386 Sugiyamaella lignohabitans uncharacterized protein XP_018734043.1 2170379 D 796027 CDS AWJ20_4387 30036513 2172362..2173081 C 1 NC_031671.1 hypothetical protein; has an apparent role in acetylation of N-terminal methionine residues; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0004596 - peptide alpha-N-acetyltransferase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016746 - transferase activity, transferring acyl groups [Evidence IEA]; GO_process: GO:0017196 - N-terminal peptidyl-methionine acetylation [Evidence IMP] [PMID 8175741]; Nat2p 2173081 NAT2 30036513 NAT2 Sugiyamaella lignohabitans Nat2p XP_018734044.1 2172362 D 796027 CDS AWJ20_4388 30036514 complement(2176203..2176940) C 1 NC_031671.1 Cytoplasmic GTPase; forms a heterodimer with Gtr2p to stimulate TORC1 in response to amino acids; component of GSE complex, which is required for sorting of Gap1p; involved in phosphate transport and telomeric silencing; similar to human RagA and RagB; GO_component: GO:0034448 - EGO complex [Evidence IDA] [PMID 16732272]; GO_component: GO:1990131 - Gtr1-Gtr2 GTPase complex [Evidence IPI] [PMID 10388807]; GO_component: GO:1990131 - Gtr1-Gtr2 GTPase complex [Evidence IPI] [PMID 16143306]; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 10388807]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 15885099]; GO_component: GO:0031902 - late endosome membrane [Evidence IDA] [PMID 16732272]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 10388807]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0005525 - GTP binding [Evidence IEA,IEA]; GO_function: GO:0003924 - GTPase activity [Evidence IDA] [PMID 22726655]; GO_function: GO:0003924 - GTPase activity [Evidence IDA] [PMID 23716719]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006184 - GTP catabolic process [Evidence IDA] [PMID 22726655]; GO_process: GO:0006348 - chromatin silencing at telomere [Evidence IMP] [PMID 18258182]; GO_process: GO:0006817 - phosphate ion transport [Evidence IEA]; GO_process: GO:0006817 - phosphate ion transport [Evidence IMP] [PMID 1620108]; GO_process: GO:0032008 - positive regulation of TOR signaling [Evidence IDA,IGI,IMP] [PMID 19748353]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006360 - transcription from RNA polymerase I promoter [Evidence IMP,IPI] [PMID 15937128]; GO_process: GO:0006383 - transcription from RNA polymerase III promoter [Evidence IMP,IPI] [PMID 15937128]; GO_process: GO:0006810 - transport [Evidence IEA]; Rag GTPase GTR1 2176940 GTR1 30036514 GTR1 Sugiyamaella lignohabitans Rag GTPase GTR1 XP_018734045.1 2176203 R 796027 CDS AWJ20_4389 30036515 2178301..2179545 C 1 NC_031671.1 Farnesyl-diphosphate farnesyl transferase (squalene synthase); joins two farnesyl pyrophosphate moieties to form squalene in the sterol biosynthesis pathway; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 14562095]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IDA] [PMID 350878]; GO_component: GO:0043231 - intracellular membrane-bounded organelle [Evidence IEA,IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IDA] [PMID 16407407]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0004310 - farnesyl-diphosphate farnesyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0004310 - farnesyl-diphosphate farnesyltransferase activity [Evidence IDA] [PMID 8157649]; GO_function: GO:0004310 - farnesyl-diphosphate farnesyltransferase activity [Evidence IDA] [PMID 8323279]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0051996 - squalene synthase activity [Evidence IEA]; GO_function: GO:0051996 - squalene synthase activity [Evidence IDA] [PMID 8157649]; GO_function: GO:0051996 - squalene synthase activity [Evidence IDA] [PMID 8323279]; GO_function: GO:0016740 - transferase activity [Evidence IEA,IEA]; GO_function: GO:0016765 - transferase activity, transferring alkyl or aryl (other than methyl) groups [Evidence IEA]; GO_process: GO:0009058 - biosynthetic process [Evidence IEA]; GO_process: GO:0006696 - ergosterol biosynthetic process [Evidence IMP] [PMID 1807826]; GO_process: GO:0006696 - ergosterol biosynthetic process [Evidence IMP] [PMID 200835]; GO_process: GO:0008299 - isoprenoid biosynthetic process [Evidence IEA]; GO_process: GO:0008610 - lipid biosynthetic process [Evidence IEA]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; GO_process: GO:0006694 - steroid biosynthetic process [Evidence IEA]; GO_process: GO:0008202 - steroid metabolic process [Evidence IEA]; GO_process: GO:0016126 - sterol biosynthetic process [Evidence IEA]; bifunctional farnesyl-diphosphate farnesyltransferase/squalene synthase 2179545 ERG9 30036515 ERG9 Sugiyamaella lignohabitans bifunctional farnesyl-diphosphate farnesyltransferase/squalene synthase XP_018734046.1 2178301 D 796027 CDS AWJ20_4390 30036517 complement(2179752..2180648) C 1 NC_031671.1 uncharacterized protein 2180648 30036517 AWJ20_4390 Sugiyamaella lignohabitans uncharacterized protein XP_018734047.1 2179752 R 796027 CDS AWJ20_4391 30036518 2189886..2190818 C 1 NC_031671.1 Protein with a role in ubiquinone (Coenzyme Q) biosynthesis; possibly functioning in stabilization of Coq7p; located on the matrix face of the mitochondrial inner membrane; component of a mitochondrial ubiquinone-synthesizing complex; GO_component: GO:0031314 - extrinsic component of mitochondrial inner membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA,IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IDA] [PMID 11469793]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006744 - ubiquinone biosynthetic process [Evidence IEA,IEA,IEA,IEA]; GO_process: GO:0006744 - ubiquinone biosynthetic process [Evidence IMP] [PMID 11469793]; GO_process: GO:0006744 - ubiquinone biosynthetic process [Evidence IMP] [PMID 9266513]; Coq4p 2190818 COQ4 30036518 COQ4 Sugiyamaella lignohabitans Coq4p XP_018734048.1 2189886 D 796027 CDS AWJ20_4392 30036519 complement(2194235..2195800) C 1 NC_031671.1 Essential evolutionarily-conserved nucleolar protein; component of the box C/D snoRNP complexes that direct 2'-O-methylation of pre-rRNA during its maturation; overexpression causes spindle orientation defects; GO_component: GO:0030686 - 90S preribosome [Evidence IDA] [PMID 12150911]; GO_component: GO:0031428 - box C/D snoRNP complex [Evidence IPI] [PMID 10733567]; GO_component: GO:0031428 - box C/D snoRNP complex [Evidence IDA] [PMID 11081632]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 11914276]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 9372940]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11914276]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0032040 - small-subunit processome [Evidence IDA] [PMID 12068309]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_process: GO:0000154 - rRNA modification [Evidence TAS] [PMID 10690410]; GO_process: GO:0006364 - rRNA processing [Evidence IMP] [PMID 10733567]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; snoRNP complex protein NOP56 2195800 NOP56 30036519 NOP56 Sugiyamaella lignohabitans snoRNP complex protein NOP56 XP_018734049.1 2194235 R 796027 CDS AWJ20_4393 30036520 2196589..2197773 C 1 NC_031671.1 Methionine aminopeptidase; catalyzes the cotranslational removal of N-terminal methionine from nascent polypeptides; function is partially redundant with that of Map2p; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0022626 - cytosolic ribosome [Evidence IEA]; GO_component: GO:0022626 - cytosolic ribosome [Evidence IDA] [PMID 11968008]; GO_function: GO:0004177 - aminopeptidase activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 21124907]; GO_function: GO:0046872 - metal ion binding [Evidence IEA,IEA]; GO_function: GO:0070006 - metalloaminopeptidase activity [Evidence IEA]; GO_function: GO:0070006 - metalloaminopeptidase activity [Evidence IDA] [PMID 2246265]; GO_function: GO:0008235 - metalloexopeptidase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_process: GO:0010629 - negative regulation of gene expression [Evidence IMP] [PMID 21124907]; GO_process: GO:0070084 - protein initiator methionine removal [Evidence IEA]; GO_process: GO:0035551 - protein initiator methionine removal involved in protein maturation [Evidence IMP] [PMID 11811952]; GO_process: GO:0006508 - proteolysis [Evidence IEA,IEA]; Map1p 2197773 MAP1 30036520 MAP1 Sugiyamaella lignohabitans Map1p XP_018734050.1 2196589 D 796027 CDS AWJ20_4394 30036521 complement(2206534..2208135) C 1 NC_031671.1 Subunit of the cytosolic chaperonin Cct ring complex; related to Tcp1p, essential protein that is required for the assembly of actin and tubulins in vivo; contains an ATP-binding motif; GO_component: GO:0005832 - chaperonin-containing T-complex [Evidence IPI] [PMID 15704212]; GO_component: GO:0005832 - chaperonin-containing T-complex [Evidence IDA] [PMID 16762366]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0051082 - unfolded protein binding [Evidence IEA]; GO_function: GO:0051082 - unfolded protein binding [Evidence IDA] [PMID 16762366]; GO_process: GO:0044267 - cellular protein metabolic process [Evidence IEA]; GO_process: GO:0006457 - protein folding [Evidence IEA]; GO_process: GO:0006457 - protein folding [Evidence IDA] [PMID 16762366]; Cct6p 2208135 CCT6 30036521 CCT6 Sugiyamaella lignohabitans Cct6p XP_018734051.1 2206534 R 796027 CDS AWJ20_4395 30036522 2208929..2209555 C 1 NC_031671.1 translin-associated factor TraX, putative 2209555 30036522 AWJ20_4395 Sugiyamaella lignohabitans translin-associated factor TraX, putative XP_018734052.1 2208929 D 796027 CDS AWJ20_4396 30036523 complement(2209793..2210395) C 1 NC_031671.1 Protein UGX2 2210395 30036523 AWJ20_4396 Sugiyamaella lignohabitans Protein UGX2 XP_018734053.1 2209793 R 796027 CDS AWJ20_4397 30036524 2216262..2218670 C 1 NC_031671.1 Transcriptional activator for GABA-dependent induction of GABA genes; binds to DNA elements found in the promoters of target genes and increases their expression in the presence of GABA (gamma-aminobutyrate); zinc finger transcription factor of the Zn(2)-Cys(6) binuclear cluster domain type; localized to the nucleus; examples of GABA genes include UGA1, UGA2, and UGA4; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 19159085]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0000978 - RNA polymerase II core promoter proximal region sequence-specific DNA binding [Evidence IDA] [PMID 12235130]; GO_function: GO:0001077 - RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription [Evidence IDA] [PMID 21515579]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19111667]; GO_function: GO:0000981 - sequence-specific DNA binding RNA polymerase II transcription factor activity [Evidence IEA]; GO_function: GO:0001010 - sequence-specific DNA binding transcription factor recruiting transcription factor activity [Evidence IDA,IGI] [PMID 21515579]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0009450 - gamma-aminobutyric acid catabolic process [Evidence IMP] [PMID 3888627]; GO_process: GO:0001080 - nitrogen catabolite activation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 7899074]; GO_process: GO:0019740 - nitrogen utilization [Evidence IMP] [PMID 7899074]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA,IEA]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Uga3p 2218670 UGA3 30036524 UGA3 Sugiyamaella lignohabitans Uga3p XP_018734054.1 2216262 D 796027 CDS AWJ20_4398 30036525 complement(join(2220434..2220442,2220853..2226492)) C 1 NC_031671.1 Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is processed to make a nucleocapsid-like protein (Gag), reverse transcriptase (RT), protease (PR), and integrase (IN); similar to retroviral genes; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9448009]; GO_component: GO:0000943 - retrotransposon nucleocapsid [Evidence ISS] [PMID 9582191]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA,IEA]; GO_function: GO:0003887 - DNA-directed DNA polymerase activity [Evidence ISS] [PMID 9582191]; GO_function: GO:0003723 - RNA binding [Evidence IEA,IEA]; GO_function: GO:0003723 - RNA binding [Evidence ISS] [PMID 9582191]; GO_function: GO:0004523 - RNA-DNA hybrid ribonuclease activity [Evidence IEA]; GO_function: GO:0003964 - RNA-directed DNA polymerase activity [Evidence IEA,IEA]; GO_function: GO:0003964 - RNA-directed DNA polymerase activity [Evidence ISS] [PMID 9582191]; GO_function: GO:0004190 - aspartic-type endopeptidase activity [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0004519 - endonuclease activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004518 - nuclease activity [Evidence IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016779 - nucleotidyltransferase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence ISS] [PMID 9582191]; GO_function: GO:0004540 - ribonuclease activity [Evidence ISS] [PMID 9582191]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0015074 - DNA integration [Evidence IEA,IEA]; GO_process: GO:0006310 - DNA recombination [Evidence IEA]; GO_process: GO:0006261 - DNA-dependent DNA replication [Evidence IEA,IEA]; GO_process: GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic [Evidence IEA]; GO_process: GO:0006278 - RNA-dependent DNA replication [Evidence IEA,IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0090305 - nucleic acid phosphodiester bond hydrolysis [Evidence IEA]; GO_process: GO:0006508 - proteolysis [Evidence IEA]; GO_process: GO:0032196 - transposition [Evidence IEA]; GO_process: GO:0032197 - transposition, RNA-mediated [Evidence ISS] [PMID 9582191]; GO_process: GO:0019076 - viral release from host cell [Evidence IEA]; gag-pol fusion protein 2226492 30036525 AWJ20_4398 Sugiyamaella lignohabitans gag-pol fusion protein XP_018734055.1 2220434 R 796027 CDS AWJ20_4399 30036526 2227206..2229161 C 1 NC_031671.1 Hydrophilic protein involved in ER/Golgi vesicle trafficking; SM (Sec1/Munc-18) family protein that binds the tSNARE Sed5p and stimulates its assembly into a trans-SNARE membrane-protein complex; GO_component: GO:0030134 - ER to Golgi transport vesicle [Evidence IDA] [PMID 10747087]; GO_component: GO:0000139 - Golgi membrane [Evidence IDA] [PMID 15372079]; GO_component: GO:0031201 - SNARE complex [Evidence IDA] [PMID 15372079]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 10747087]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IGI] [PMID 15958490]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_function: GO:0000149 - SNARE binding [Evidence IDA] [PMID 15958490]; GO_function: GO:0019905 - syntaxin binding [Evidence IDA,IMP] [PMID 12186954]; GO_function: GO:0019905 - syntaxin binding [Evidence IDA] [PMID 15372079]; GO_process: GO:0006888 - ER to Golgi vesicle-mediated transport [Evidence IMP] [PMID 9545229]; GO_process: GO:0035543 - positive regulation of SNARE complex assembly [Evidence IMP] [PMID 12186954]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006890 - retrograde vesicle-mediated transport, Golgi to ER [Evidence IMP] [PMID 15958490]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0006904 - vesicle docking involved in exocytosis [Evidence IEA]; GO_process: GO:0048280 - vesicle fusion with Golgi apparatus [Evidence IMP] [PMID 8636207]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IEA]; Sly1p 2229161 SLY1 30036526 SLY1 Sugiyamaella lignohabitans Sly1p XP_018734056.1 2227206 D 796027 CDS AWJ20_4400 30036529 2230272..2231993 C 1 NC_031671.1 uncharacterized protein 2231993 30036529 AWJ20_4400 Sugiyamaella lignohabitans uncharacterized protein XP_018734057.1 2230272 D 796027 CDS AWJ20_4401 30036530 complement(2232530..2233900) C 1 NC_031671.1 ATP-dependent DNA helicase, also known as pontin; member of the AAA+ and RuvB-like protein families; similar to Rvb2p; conserved component of multiple complexes including the INO80 complex, the Swr1 complex, and the R2TP complex (Rvb1-Rvb2-Tah1-Pih1); involved in multiple processes such as chromatin remodeling, box C/D snoRNP assembly, and RNA polymerase II assembly; GO_component: GO:0070209 - ASTRA complex [Evidence IDA] [PMID 19040720]; GO_component: GO:0031011 - Ino80 complex [Evidence IPI] [PMID 10952318]; GO_component: GO:0031011 - Ino80 complex [Evidence IPI] [PMID 24034245]; GO_component: GO:0097255 - R2TP complex [Evidence IDA] [PMID 15766533]; GO_component: GO:0097255 - R2TP complex [Evidence IPI] [PMID 18268103]; GO_component: GO:0000812 - Swr1 complex [Evidence IPI] [PMID 14645854]; GO_component: GO:0000812 - Swr1 complex [Evidence IPI] [PMID 14690608]; GO_component: GO:0000812 - Swr1 complex [Evidence IDA] [PMID 16299513]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 10684247]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0043140 - ATP-dependent 3'-5' DNA helicase activity [Evidence IDA] [PMID 10952318]; GO_function: GO:0043141 - ATP-dependent 5'-3' DNA helicase activity [Evidence IEA]; GO_function: GO:0043141 - ATP-dependent 5'-3' DNA helicase activity [Evidence IDA] [PMID 18234224]; GO_function: GO:0003678 - DNA helicase activity [Evidence IEA]; GO_function: GO:0004386 - helicase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_process: GO:0032508 - DNA duplex unwinding [Evidence IEA]; GO_process: GO:0006281 - DNA repair [Evidence IEA]; GO_process: GO:0000492 - box C/D snoRNP assembly [Evidence IMP] [PMID 18268103]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0016568 - chromatin modification [Evidence IEA]; GO_process: GO:0006338 - chromatin remodeling [Evidence IPI] [PMID 14690608]; GO_process: GO:0043486 - histone exchange [Evidence IPI] [PMID 14645854]; GO_process: GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 11278922]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; RuvB family ATP-dependent DNA helicase pontin 2233900 RVB1 30036530 RVB1 Sugiyamaella lignohabitans RuvB family ATP-dependent DNA helicase pontin XP_018734058.1 2232530 R 796027 CDS AWJ20_4402 30036531 2234504..2236435 C 1 NC_031671.1 Member of the Sir2 family of NAD(+)-dependent protein deacetylases; involved along with Hst3p in silencing at telomeres, cell cycle progression, radiation resistance, genomic stability and short-chain fatty acid metabolism; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003677 - DNA binding [Evidence ISS] [PMID 7498786]; GO_function: GO:0070403 - NAD+ binding [Evidence IEA]; GO_function: GO:0004407 - histone deacetylase activity [Evidence IMP] [PMID 16815704]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_process: GO:0006348 - chromatin silencing at telomere [Evidence IGI] [PMID 7498786]; GO_process: GO:0016575 - histone deacetylation [Evidence IMP] [PMID 16815704]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0046459 - short-chain fatty acid metabolic process [Evidence IMP] [PMID 12618394]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Hst4p 2236435 HST4 30036531 HST4 Sugiyamaella lignohabitans Hst4p XP_018734059.1 2234504 D 796027 CDS AWJ20_4403 30036532 complement(2236658..2237482) C 1 NC_031671.1 Putative GTPase with a role in biogenesis of RNA pol II and polIII; may be involved in assembly of RNA polymerases II and III and in their transport into the nucleus; may have a role in sister chromatid cohesion; contains a Gly-Pro-Asn motif in the G domain; similar to Npa3p and Gpn2p; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0005525 - GTP binding [Evidence IEA]; GO_function: GO:0005525 - GTP binding [Evidence ISA] [PMID 23267056]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_function: GO:0005048 - signal sequence binding [Evidence ISS] [PMID 14690591]; GO_process: GO:0044376 - RNA polymerase II complex localization to nucleus [Evidence IMP] [PMID 23267056]; GO_process: GO:1990022 - RNA polymerase III complex localization to nucleus [Evidence IMP] [PMID 23267056]; Gpn3p 2237482 GPN3 30036532 GPN3 Sugiyamaella lignohabitans Gpn3p XP_018734060.1 2236658 R 796027 CDS AWJ20_4404 30036533 complement(2237940..2240624) C 1 NC_031671.1 Endoplasmic reticulum zinc transporter; part of a heterodimeric transporter with Zrg17p that transfers zinc from the cytosol to the ER lumen; member of the cation diffusion facilitator family of efflux pumps; localizes to ER and nucleus; mutations affect the cellular distribution of zinc and also confer defects in meiotic recombination between homologous chromatids; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 15277543]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISS] [PMID 11058603]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0031965 - nuclear membrane [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_function: GO:0008324 - cation transmembrane transporter activity [Evidence IEA]; GO_function: GO:0046873 - metal ion transmembrane transporter activity [Evidence ISS] [PMID 11058603]; GO_function: GO:0005385 - zinc ion transmembrane transporter activity [Evidence IMP] [PMID 11058603]; GO_process: GO:0006812 - cation transport [Evidence IEA]; GO_process: GO:0006882 - cellular zinc ion homeostasis [Evidence IMP] [PMID 11058603]; GO_process: GO:0006811 - ion transport [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IMP] [PMID 15277543]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0006829 - zinc ion transport [Evidence IEA]; GO_process: GO:0006829 - zinc ion transport [Evidence IMP] [PMID 15277543]; metal cation transporter MSC2 2240624 MSC2 30036533 MSC2 Sugiyamaella lignohabitans metal cation transporter MSC2 XP_018734061.1 2237940 R 796027 CDS AWJ20_4405 30036534 2241082..2242248 C 1 NC_031671.1 Protein involved in mRNA splicing; contains a consensus nuclear export signal (NES) sequence similar to the consensus sequence recognized by Crm1p; interacts genetically with Prp40p and Tgs1p; contains WD40 repeats; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 19451230]; GO_component: GO:0030532 - small nuclear ribonucleoprotein complex [Evidence IDA] [PMID 19451230]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008380 - RNA splicing [Evidence IEA]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0000398 - mRNA splicing, via spliceosome [Evidence IMP] [PMID 19451230]; Swt21p 2242248 SWT21 30036534 SWT21 Sugiyamaella lignohabitans Swt21p XP_018734062.1 2241082 D 796027 CDS AWJ20_4406 30036535 complement(2242438..2243550) C 1 NC_031671.1 Catalytic subunit of the COP9 signalosome (CSN) complex; acts as an isopeptidase in cleaving the ubiquitin-like protein Nedd8 from SCF ubiquitin ligases; metalloendopeptidase involved in the adaptation to pheromone signaling; GO_component: GO:0008180 - COP9 signalosome [Evidence IEA]; GO_component: GO:0008180 - COP9 signalosome [Evidence IDA] [PMID 12446563]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004222 - metalloendopeptidase activity [Evidence IMP] [PMID 12183637]; GO_function: GO:0008237 - metallopeptidase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_process: GO:0000754 - adaptation of signaling pathway by response to pheromone involved in conjugation with cellular fusion [Evidence IMP] [PMID 12446563]; GO_process: GO:0010388 - cullin deneddylation [Evidence IMP] [PMID 12186635]; GO_process: GO:0010388 - cullin deneddylation [Evidence IMP] [PMID 12446563]; GO_process: GO:0010388 - cullin deneddylation [Evidence IMP] [PMID 24164706]; GO_process: GO:0070452 - positive regulation of ergosterol biosynthetic process [Evidence IMP] [PMID 24164706]; GO_process: GO:0006508 - proteolysis [Evidence IEA]; Rri1p 2243550 RRI1 30036535 RRI1 Sugiyamaella lignohabitans Rri1p XP_018734063.1 2242438 R 796027 CDS AWJ20_4407 30036536 2244772..2247237 C 1 NC_031671.1 uncharacterized protein 2247237 30036536 AWJ20_4407 Sugiyamaella lignohabitans uncharacterized protein XP_018734064.1 2244772 D 796027 CDS AWJ20_4408 30036537 complement(2247390..2248109) C 1 NC_031671.1 Component of glycosylphosphatidylinositol-mannosyltransferase I; essential component; required for the autocatalytic post-translational processing of the protease B precursor Prb1p; localizes to ER in lumenal orientation; homolog of mammalian PIG-X; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 9649520]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0000030 - mannosyltransferase activity [Evidence IMP] [PMID 15635094]; GO_process: GO:0030433 - ER-associated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 16418276]; GO_process: GO:0006506 - GPI anchor biosynthetic process [Evidence IEA,IEA,IEA]; GO_process: GO:0006506 - GPI anchor biosynthetic process [Evidence IMP] [PMID 15635094]; GO_process: GO:0016485 - protein processing [Evidence IMP] [PMID 9649520]; Pbn1p 2248109 PBN1 30036537 PBN1 Sugiyamaella lignohabitans Pbn1p XP_018734065.1 2247390 R 796027 CDS AWJ20_4409 30036538 2250779..2251789 C 1 NC_031671.1 uncharacterized protein 2251789 30036538 AWJ20_4409 Sugiyamaella lignohabitans uncharacterized protein XP_018734066.1 2250779 D 796027 CDS AWJ20_4410 30036540 complement(2252126..2254819) C 1 NC_031671.1 GTPase-activating protein (RhoGAP) for Cdc42p and Rho5p; relocalizes from bud neck to cytoplasm upon DNA replication stress; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 14562095]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 22842922]; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 22842922]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_function: GO:0005096 - GTPase activator activity [Evidence IEA]; GO_function: GO:0005100 - Rho GTPase activator activity [Evidence IDA] [PMID 11591390]; GO_process: GO:0035556 - intracellular signal transduction [Evidence IEA]; GO_process: GO:0043547 - positive regulation of GTPase activity [Evidence IEA]; GO_process: GO:0007165 - signal transduction [Evidence IEA]; GO_process: GO:0007264 - small GTPase mediated signal transduction [Evidence IC,IPI] [PMID 11591390]; Rgd2p 2254819 RGD2 30036540 RGD2 Sugiyamaella lignohabitans Rgd2p XP_018734067.1 2252126 R 796027 CDS AWJ20_4411 30036541 2257298..2260183 C 1 NC_031671.1 Zinc cluster protein proposed to be a transcriptional regulator; regulator involved in the stress response; null mutants have a respiratory deficiency, calcofluor white sensitivity and slightly increased cycloheximide resistance; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19111667]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19158363]; GO_function: GO:0000981 - sequence-specific DNA binding RNA polymerase II transcription factor activity [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence IEA]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA,IEA]; GO_process: GO:0006950 - response to stress [Evidence IEA]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA,IEA]; Asg1p 2260183 ASG1 30036541 ASG1 Sugiyamaella lignohabitans Asg1p XP_018734068.1 2257298 D 796027 CDS AWJ20_4412 30036542 complement(2260396..2262627) C 1 NC_031671.1 GTP cyclohydrolase II; catalyzes the first step of the riboflavin biosynthesis pathway; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0005525 - GTP binding [Evidence IEA]; GO_function: GO:0003935 - GTP cyclohydrolase II activity [Evidence IEA,IEA]; GO_function: GO:0019238 - cyclohydrolase activity [Evidence IGI,IMP] [PMID 4555411]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0009231 - riboflavin biosynthetic process [Evidence IEA,IEA,IEA]; GO_process: GO:0009231 - riboflavin biosynthetic process [Evidence IMP] [PMID 4555411]; GO_process: GO:0009231 - riboflavin biosynthetic process [Evidence IMP] [PMID 5366000]; GTP cyclohydrolase II 2262627 RIB1 30036542 RIB1 Sugiyamaella lignohabitans GTP cyclohydrolase II XP_018734069.1 2260396 R 796027 CDS AWJ20_4413 30036543 2264645..2265148 C 1 NC_031671.1 uncharacterized protein 2265148 30036543 AWJ20_4413 Sugiyamaella lignohabitans uncharacterized protein XP_018734070.1 2264645 D 796027 CDS AWJ20_4414 30036544 complement(2266161..2267450) C 1 NC_031671.1 Methylesterase performing penultimate step of diphthamide biosynthesis; hydrolyzes methylated diphthine to produce diphthine and allows Dph6-catalyzed amidation reaction to occur; deletion leads to resistance to sordarin and accumulation of methylatediphthine; WD40 domain-containing protein; involved in endosomal recycling; forms complex with Rtt10p that functions in retromer-mediated pathway for recycling internalized cell-surface proteins; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 21880895]; GO_component: GO:0005768 - endosome [Evidence IEA,IEA]; GO_component: GO:0005768 - endosome [Evidence IDA] [PMID 21880895]; GO_function: GO:0032451 - demethylase activity [Evidence IDA,IMP] [PMID 24739148]; GO_process: GO:0032456 - endocytic recycling [Evidence IMP] [PMID 21880895]; GO_process: GO:0017183 - peptidyl-diphthamide biosynthetic process from peptidyl-histidine [Evidence IEA]; GO_process: GO:0017183 - peptidyl-diphthamide biosynthetic process from peptidyl-histidine [Evidence IMP] [PMID 22188241]; diphthamide synthase 2267450 RRT2 30036544 RRT2 Sugiyamaella lignohabitans diphthamide synthase XP_018734071.1 2266161 R 796027 CDS AWJ20_4415 30036545 2270766..2271950 C 1 NC_031671.1 Molybdenum cofactor biosynthesis protein A 2271950 30036545 AWJ20_4415 Sugiyamaella lignohabitans Molybdenum cofactor biosynthesis protein A XP_018734072.1 2270766 D 796027 CDS AWJ20_4416 30036546 2272077..2272652 C 1 NC_031671.1 Molybdenum cofactor biosynthesis protein C 2272652 ERP3 30036546 ERP3 Sugiyamaella lignohabitans Molybdenum cofactor biosynthesis protein C XP_018734073.1 2272077 D 796027 CDS AWJ20_4418 30036548 2273945..2274283 C 1 NC_031671.1 one of two genes similar to Amanita muscaria DOPA-dioxygenase; allele of CaO19.8608; putative DOPA-dioxygenase 2274283 DOP98 30036548 DOP98 Sugiyamaella lignohabitans putative DOPA-dioxygenase XP_018734074.1 2273945 D 796027 CDS AWJ20_4419 30036549 2274543..2275703 C 1 NC_031671.1 Protein that facilitates ribosomal subunit dissociation; Dom34-Hbs1 complex and Rli1p have roles in dissociating inactive ribosomes to facilitate translation restart, particularly ribosomes stalled in 3' UTRs; required for RNA cleavage in no-go decay, but reports conflict on endonuclease activity; Pelota ortholog; protein abundance increases in response to DNA replication stress; DOM34 has a paralog, YCL001W-B, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0004519 - endonuclease activity [Evidence IEA]; GO_function: GO:0004521 - endoribonuclease activity [Evidence IDA] [PMID 17889667]; GO_function: GO:0004521 - endoribonuclease activity [Evidence IDA] [PMID 19420139]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004518 - nuclease activity [Evidence IEA]; GO_function: GO:0043022 - ribosome binding [Evidence IDA] [PMID 21623367]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0007126 - meiotic nuclear division [Evidence IEA]; GO_process: GO:0007067 - mitotic nuclear division [Evidence IEA]; GO_process: GO:0070651 - nonfunctional rRNA decay [Evidence IMP] [PMID 19481524]; GO_process: GO:0000294 - nuclear-transcribed mRNA catabolic process, endonucleolytic cleavage-dependent decay [Evidence IDA] [PMID 17889667]; GO_process: GO:0070966 - nuclear-transcribed mRNA catabolic process, no-go decay [Evidence IGI] [PMID 16554824]; GO_process: GO:0070966 - nuclear-transcribed mRNA catabolic process, no-go decay [Evidence IMP] [PMID 19420139]; GO_process: GO:0090305 - nucleic acid phosphodiester bond hydrolysis [Evidence IEA]; GO_process: GO:0045727 - positive regulation of translation [Evidence IMP] [PMID 24424461]; GO_process: GO:0006417 - regulation of translation [Evidence IEA]; GO_process: GO:0032790 - ribosome disassembly [Evidence IDA] [PMID 20947765]; GO_process: GO:0032790 - ribosome disassembly [Evidence IMP] [PMID 22770215]; GO_process: GO:0032790 - ribosome disassembly [Evidence IDA,IMP] [PMID 24424461]; GO_process: GO:0006412 - translation [Evidence IEA]; ribosome dissociation factor DOM34 2275703 DOM34 30036549 DOM34 Sugiyamaella lignohabitans ribosome dissociation factor DOM34 XP_018734075.1 2274543 D 796027 CDS AWJ20_4420 30036551 2276507..2277661 C 1 NC_031671.1 Plasma membrane low glucose sensor, regulates glucose transport; contains 12 predicted transmembrane segments and a long C-terminal tail required for induction of hexose transporters; also senses fructose and mannose; SNF3 has a paralog, RGT2, that arose from the whole genome duplication; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 2406560]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 24124599]; GO_function: GO:0005536 - glucose binding [Evidence TAS] [PMID 10477308]; GO_function: GO:0005355 - glucose transmembrane transporter activity [Evidence TAS] [PMID 10477308]; GO_function: GO:0004872 - receptor activity [Evidence TAS] [PMID 10477308]; GO_function: GO:0022891 - substrate-specific transmembrane transporter activity [Evidence IEA]; GO_function: GO:0022857 - transmembrane transporter activity [Evidence IEA]; GO_function: GO:0005215 - transporter activity [Evidence IEA]; GO_process: GO:0008643 - carbohydrate transport [Evidence IEA]; GO_process: GO:0051594 - detection of glucose [Evidence IGI,IMP] [PMID 8901598]; GO_process: GO:0015755 - fructose transport [Evidence IMP] [PMID 2046678]; GO_process: GO:0015758 - glucose transport [Evidence IMP] [PMID 2046678]; GO_process: GO:0015758 - glucose transport [Evidence IGI] [PMID 9564039]; GO_process: GO:0015761 - mannose transport [Evidence IMP] [PMID 2046678]; GO_process: GO:0045835 - negative regulation of meiosis [Evidence IMP] [PMID 18616605]; GO_process: GO:0007165 - signal transduction [Evidence TAS] [PMID 10477308]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; Snf3p 2277661 SNF3 30036551 SNF3 Sugiyamaella lignohabitans Snf3p XP_018734076.1 2276507 D 796027 CDS AWJ20_4421 30036552 2277959..2278162 C 1 NC_031671.1 uncharacterized protein 2278162 30036552 AWJ20_4421 Sugiyamaella lignohabitans uncharacterized protein XP_018734077.1 2277959 D 796027 CDS AWJ20_4422 30036553 2278558..2279526 C 1 NC_031671.1 uncharacterized protein 2279526 30036553 AWJ20_4422 Sugiyamaella lignohabitans uncharacterized protein XP_018734078.1 2278558 D 796027 CDS AWJ20_4423 30036554 complement(2280776..2281357) C 1 NC_031671.1 ubiquinone biosynthesis protein Coq9 (predicted) 2281357 coq9 30036554 coq9 Sugiyamaella lignohabitans ubiquinone biosynthesis protein Coq9 (predicted) XP_018734079.1 2280776 R 796027 CDS AWJ20_4424 30036555 2282230..2284548 C 1 NC_031671.1 Protein involved in recovery from arrest in response to pheromone; acts in a cell cycle arrest recovery pathway independent from Far1p; interacts with Far3p, Far7p, Far8p, Far9p, and Far11p; potential Cdc28p substrate; FAR10 has a paralog, VPS64, that arose from the whole genome duplication; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 12514182]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 23625923]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0000321 - re-entry into mitotic cell cycle after pheromone arrest [Evidence IGI] [PMID 12588993]; Far10p 2284548 FAR10 30036555 FAR10 Sugiyamaella lignohabitans Far10p XP_018734080.1 2282230 D 796027 CDS AWJ20_4425 30036556 2284858..2285790 C 1 NC_031671.1 Subunit of the mitochondrial (mt) i-AAA protease supercomplex; i-AAA degrades misfolded mitochondrial proteins; forms a subcomplex with Mgr1p that binds to substrates to facilitate proteolysis; required for growth of cells lacking mtDNA; GO_component: GO:0031942 - i-AAA complex [Evidence IDA] [PMID 18843051]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IDA] [PMID 18843051]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0051787 - misfolded protein binding [Evidence IDA] [PMID 18843051]; GO_process: GO:0006515 - misfolded or incompletely synthesized protein catabolic process [Evidence IMP] [PMID 18843051]; Mgr3p 2285790 MGR3 30036556 MGR3 Sugiyamaella lignohabitans Mgr3p XP_018734081.1 2284858 D 796027 CDS AWJ20_4426 30036557 2286204..2286602 C 1 NC_031671.1 uncharacterized protein 2286602 30036557 AWJ20_4426 Sugiyamaella lignohabitans uncharacterized protein XP_018734082.1 2286204 D 796027 CDS AWJ20_4427 30036558 complement(2286888..2287433) C 1 NC_031671.1 uncharacterized protein 2287433 30036558 AWJ20_4427 Sugiyamaella lignohabitans uncharacterized protein XP_018734083.1 2286888 R 796027 CDS AWJ20_4428 30036559 complement(2290605..2291834) C 1 NC_031671.1 Dihydrofolate synthetase, involved in folic acid biosynthesis; catalyzes conversion of dihydropteroate to dihydrofolate in folate coenzyme biosynthesis; FOL3 has a paralog, RMA1, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0008841 - dihydrofolate synthase activity [Evidence IEA]; GO_function: GO:0008841 - dihydrofolate synthase activity [Evidence IMP] [PMID 11731153]; GO_function: GO:0016874 - ligase activity [Evidence IEA,IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0004326 - tetrahydrofolylpolyglutamate synthase activity [Evidence IEA]; GO_process: GO:0009058 - biosynthetic process [Evidence IEA]; GO_process: GO:0006761 - dihydrofolate biosynthetic process [Evidence IEA]; GO_process: GO:0009396 - folic acid-containing compound biosynthetic process [Evidence IEA]; GO_process: GO:0009396 - folic acid-containing compound biosynthetic process [Evidence IMP] [PMID 11731153]; GO_process: GO:0006730 - one-carbon metabolic process [Evidence IEA]; GO_process: GO:0046901 - tetrahydrofolylpolyglutamate biosynthetic process [Evidence IEA]; dihydrofolate synthase 2291834 FOL3 30036559 FOL3 Sugiyamaella lignohabitans dihydrofolate synthase XP_018734084.1 2290605 R 796027 CDS AWJ20_4429 30036560 2293027..2295939 C 1 NC_031671.1 similar to Saccharomyces cerevisiae S288c NP_116617.1; Rpo41p 2295939 RPO41 30036560 RPO41 Sugiyamaella lignohabitans Rpo41p XP_018734085.1 2293027 D 796027 CDS AWJ20_4430 30036562 2297411..2298451 C 1 NC_031671.1 Elongase I, medium-chain acyl elongase; catalyzes carboxy-terminal elongation of unsaturated C12-C16 fatty acyl-CoAs to C16-C18 fatty acids; ELO1 has a paralog, FEN1, that arose from the whole genome duplication; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0016020 - membrane [Evidence ISS] [PMID 8702485]; GO_function: GO:0009922 - fatty acid elongase activity [Evidence IMP] [PMID 12684876]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006633 - fatty acid biosynthetic process [Evidence IEA]; GO_process: GO:0019368 - fatty acid elongation, unsaturated fatty acid [Evidence IMP] [PMID 10850979]; GO_process: GO:0006631 - fatty acid metabolic process [Evidence IEA]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; fatty acid elongase ELO1 2298451 ELO1 30036562 ELO1 Sugiyamaella lignohabitans fatty acid elongase ELO1 XP_018734086.1 2297411 D 796027 CDS AWJ20_4431 30036563 2299717..2301507 C 1 NC_031671.1 glucose-inactivated glycerol proton symporter STL1 2301507 STL1 30036563 STL1 Sugiyamaella lignohabitans glucose-inactivated glycerol proton symporter STL1 XP_018734087.1 2299717 D 796027 CDS AWJ20_4432 30036564 complement(2305254..2305874) C 1 NC_031671.1 Noncatalytic subunit of a tRNA methyltransferase complex; Trm8p and Trm82p comprise an enzyme that catalyzes a methyl-transfer from S-adenosyl-l-methionine to the N(7) atom of guanine at position 46 in tRNA; Trm8 lacks catalytic activity if not bound to Trm82p; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0043527 - tRNA methyltransferase complex [Evidence IDA] [PMID 12403464]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0008168 - methyltransferase activity [Evidence IEA]; GO_function: GO:0008176 - tRNA (guanine-N7-)-methyltransferase activity [Evidence IEA,IEA,IEA]; GO_function: GO:0008176 - tRNA (guanine-N7-)-methyltransferase activity [Evidence IMP] [PMID 12403464]; GO_function: GO:0008176 - tRNA (guanine-N7-)-methyltransferase activity [Evidence IDA] [PMID 17382321]; GO_function: GO:0000049 - tRNA binding [Evidence IEA,IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0036265 - RNA (guanine-N7)-methylation [Evidence IEA,IEA,IEA]; GO_process: GO:0032259 - methylation [Evidence IEA]; GO_process: GO:0030488 - tRNA methylation [Evidence IEA]; GO_process: GO:0030488 - tRNA methylation [Evidence IMP] [PMID 12403464]; GO_process: GO:0030488 - tRNA methylation [Evidence IDA] [PMID 17382321]; GO_process: GO:0006400 - tRNA modification [Evidence IEA]; GO_process: GO:0008033 - tRNA processing [Evidence IEA]; Trm8p 2305874 TRM8 30036564 TRM8 Sugiyamaella lignohabitans Trm8p XP_018734088.1 2305254 R 796027 CDS AWJ20_4433 30036565 2307112..2308890 C 1 NC_031671.1 Vacuolar carboxypeptidase S; expression is induced under low-nitrogen conditions; GO_component: GO:0000328 - fungal-type vacuole lumen [Evidence IDA] [PMID 1569061]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0004180 - carboxypeptidase activity [Evidence IEA]; GO_function: GO:0004180 - carboxypeptidase activity [Evidence IMP] [PMID 2026161]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA,IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004181 - metallocarboxypeptidase activity [Evidence IEA]; GO_function: GO:0008237 - metallopeptidase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0006807 - nitrogen compound metabolic process [Evidence IMP] [PMID 2026161]; GO_process: GO:0006508 - proteolysis [Evidence IEA,IEA]; GO_process: GO:0051603 - proteolysis involved in cellular protein catabolic process [Evidence IMP] [PMID 2026161]; Cps1p 2308890 CPS1 30036565 CPS1 Sugiyamaella lignohabitans Cps1p XP_018734089.1 2307112 D 796027 CDS AWJ20_4434 30036566 complement(2309070..2309897) C 1 NC_031671.1 Bifunctional triacylglycerol lipase and 1-acyl DHAP reductase; NADPH-dependent 1-acyl dihydroxyacetone phosphate reductase involved in phosphatidic acid biosynthesis; lipid droplet triacylglycerol lipase involved in the mobilization of non-polar lipids; found in lipid particles, the endoplasmic reticulum and the mitochondrial outer membrane; required for spore germination; role in cell wall biosynthesis; capable of metabolizing steroid hormones; oleic acid inducible; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA,IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 10617610]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0005811 - lipid particle [Evidence IEA,IEA]; GO_component: GO:0005811 - lipid particle [Evidence IDA] [PMID 10617610]; GO_component: GO:0005811 - lipid particle [Evidence IDA] [PMID 24868093]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IDA] [PMID 16407407]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0000140 - acylglycerone-phosphate reductase activity [Evidence IEA]; GO_function: GO:0000140 - acylglycerone-phosphate reductase activity [Evidence IMP] [PMID 10617610]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0004806 - triglyceride lipase activity [Evidence IDA,IGI,IMP] [PMID 24187129]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; GO_process: GO:0006654 - phosphatidic acid biosynthetic process [Evidence IMP] [PMID 10617610]; GO_process: GO:0019433 - triglyceride catabolic process [Evidence IGI] [PMID 24187129]; acylglycerone-phosphate reductase 2309897 AYR1 30036566 AYR1 Sugiyamaella lignohabitans acylglycerone-phosphate reductase XP_018734090.1 2309070 R 796027 CDS AWJ20_4435 30036567 2310141..2311646 C 1 NC_031671.1 uncharacterized protein 2311646 30036567 AWJ20_4435 Sugiyamaella lignohabitans uncharacterized protein XP_018734091.1 2310141 D 796027 CDS AWJ20_4436 30036568 complement(2311686..2312504) C 1 NC_031671.1 Carboxyl methyltransferase; methylates the C terminus of the protein phosphatase 2A catalytic subunit (Pph21p or Pph22p), which is important for complex formation with regulatory subunits; required for methionine to inhibit autophagy and promote growth; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0008168 - methyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0018423 - protein C-terminal leucine carboxyl O-methyltransferase activity [Evidence IMP] [PMID 11060018]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006481 - C-terminal protein methylation [Evidence IMP] [PMID 11060018]; GO_process: GO:0043623 - cellular protein complex assembly [Evidence IMP] [PMID 11060018]; GO_process: GO:0032259 - methylation [Evidence IEA,IEA]; GO_process: GO:0010506 - regulation of autophagy [Evidence IMP] [PMID 23870128]; Ppm1p 2312504 PPM1 30036568 PPM1 Sugiyamaella lignohabitans Ppm1p XP_018734092.1 2311686 R 796027 CDS AWJ20_4437 30036569 complement(2312541..2312846) C 1 NC_031671.1 uncharacterized protein 2312846 30036569 AWJ20_4437 Sugiyamaella lignohabitans uncharacterized protein XP_018734093.1 2312541 R 796027 CDS AWJ20_4438 30036570 2313368..2314573 C 1 NC_031671.1 uncharacterized protein 2314573 30036570 AWJ20_4438 Sugiyamaella lignohabitans uncharacterized protein XP_018734094.1 2313368 D 796027 CDS AWJ20_4439 30036571 complement(join(2314963..2318539,2318598..2318809)) C 1 NC_031671.1 Component of the Sec13p-Sec31p complex of the COPII vesicle coat; COPII coat is required for vesicle formation in ER to Golgi transport; mutant has increased aneuploidy tolerance; GO_component: GO:0030127 - COPII vesicle coat [Evidence IDA] [PMID 8004676]; GO_component: GO:0012507 - ER to Golgi transport vesicle membrane [Evidence IEA]; GO_component: GO:0031410 - cytoplasmic vesicle [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 19053807]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0005198 - structural molecule activity [Evidence IDA] [PMID 17604721]; GO_process: GO:0090114 - COPII-coated vesicle budding [Evidence IMP] [PMID 12475940]; GO_process: GO:0090114 - COPII-coated vesicle budding [Evidence IDA] [PMID 8223424]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IEA]; Sec31p 2318809 SEC31 30036571 SEC31 Sugiyamaella lignohabitans Sec31p XP_018734095.1 2314963 R 796027 CDS AWJ20_4440 30036573 2319259..2319795 C 1 NC_031671.1 uncharacterized protein 2319795 30036573 AWJ20_4440 Sugiyamaella lignohabitans uncharacterized protein XP_018734096.1 2319259 D 796027 CDS AWJ20_4441 30036574 complement(2321300..2321626) C 1 NC_031671.1 Serine/threonine MAP kinase; involved in regulating maintenance of cell wall integrity, cell cycle progression, and nuclear mRNA retention in heat shock; required for mitophagy and pexophagy; affects recruitment of mitochondria to phagophore assembly site (PAS); plays a role in adaptive response of cells to cold; regulated by the PKC1-mediated signaling pathway; SLT2 has a paralog, KDX1, that arose from the whole genome duplication; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 12361575]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 23924898]; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 12361575]; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 23924898]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 12361575]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 12361575]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 23924898]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004707 - MAP kinase activity [Evidence IEA,IEA]; GO_function: GO:0004707 - MAP kinase activity [Evidence ISS] [PMID 8386319]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0004672 - protein kinase activity [Evidence IEA]; GO_function: GO:0004672 - protein kinase activity [Evidence IDA] [PMID 16319894]; GO_function: GO:0004674 - protein serine/threonine kinase activity [Evidence IEA,IEA]; GO_function: GO:0004674 - protein serine/threonine kinase activity [Evidence IDA] [PMID 20823268]; GO_function: GO:0004674 - protein serine/threonine kinase activity [Evidence IDA] [PMID 24554767]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016772 - transferase activity, transferring phosphorus-containing groups [Evidence IEA]; GO_process: GO:0000165 - MAPK cascade [Evidence IEA,IEA]; GO_process: GO:0030969 - UFP-specific transcription factor mRNA processing involved in endoplasmic reticulum unfolded protein response [Evidence IMP] [PMID 18971375]; GO_process: GO:0000917 - barrier septum assembly [Evidence IGI] [PMID 19633265]; GO_process: GO:0030968 - endoplasmic reticulum unfolded protein response [Evidence IDA,IMP] [PMID 16380504]; GO_process: GO:0009272 - fungal-type cell wall biogenesis [Evidence IGI] [PMID 16524906]; GO_process: GO:0030242 - peroxisome degradation [Evidence IMP] [PMID 20385774]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; GO_process: GO:0006468 - protein phosphorylation [Evidence IEA]; GO_process: GO:0006468 - protein phosphorylation [Evidence IMP] [PMID 14703512]; GO_process: GO:0006468 - protein phosphorylation [Evidence IDA] [PMID 16319894]; GO_process: GO:0006468 - protein phosphorylation [Evidence IMP] [PMID 20219973]; GO_process: GO:0008361 - regulation of cell size [Evidence IMP] [PMID 17302939]; GO_process: GO:0060237 - regulation of fungal-type cell wall organization [Evidence IGI,IMP] [PMID 8386319]; GO_process: GO:0042990 - regulation of transcription factor import into nucleus [Evidence IMP] [PMID 20219973]; GO_process: GO:0001101 - response to acid [Evidence IMP] [PMID 16087742]; GO_process: GO:0007165 - signal transduction [Evidence IMP] [PMID 8386319]; mitogen-activated serine/threonine-protein kinase SLT2 2321626 SLT2 30036574 SLT2 Sugiyamaella lignohabitans mitogen-activated serine/threonine-protein kinase SLT2 XP_018734097.1 2321300 R 796027 CDS AWJ20_4442 30036575 2322706..2323311 C 1 NC_031671.1 uncharacterized protein 2323311 30036575 AWJ20_4442 Sugiyamaella lignohabitans uncharacterized protein XP_018734098.1 2322706 D 796027 CDS AWJ20_4443 30036576 2325220..2325630 C 1 NC_031671.1 Chorismate mutase; catalyzes the conversion of chorismate to prephenate to initiate the tyrosine/phenylalanine-specific branch of aromatic amino acid biosynthesis; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0004106 - chorismate mutase activity [Evidence IEA,IEA]; GO_function: GO:0004106 - chorismate mutase activity [Evidence IDA] [PMID 3027508]; GO_function: GO:0016853 - isomerase activity [Evidence IEA]; GO_process: GO:0009094 - L-phenylalanine biosynthetic process [Evidence IC,IMP] [PMID 3027508]; GO_process: GO:0009073 - aromatic amino acid family biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0046417 - chorismate metabolic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0006571 - tyrosine biosynthetic process [Evidence IC,IMP] [PMID 3027508]; chorismate mutase ARO7 2325630 ARO7 30036576 ARO7 Sugiyamaella lignohabitans chorismate mutase ARO7 XP_018734099.1 2325220 D 796027 CDS AWJ20_4444 30036577 complement(2325865..2326494) C 1 NC_031671.1 Putative mitochondrial inner membrane transporter; proposed role in oleate metabolism and glutamate biosynthesis; member of the mitochondrial carrier (MCF) family; localizes to vacuole in response to H2O2; YMC1 has a paralog, YMC2, that arose from the whole genome duplication; GO_component: GO:0000324 - fungal-type vacuole [Evidence IDA] [PMID 23509072]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16140254]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0005342 - organic acid transmembrane transporter activity [Evidence IGI,ISS] [PMID 16140254]; GO_process: GO:0006839 - mitochondrial transport [Evidence IGI] [PMID 16140254]; GO_process: GO:0006810 - transport [Evidence IEA]; Ymc1p 2326494 YMC1 30036577 YMC1 Sugiyamaella lignohabitans Ymc1p XP_018734100.1 2325865 R 796027 CDS AWJ20_4445 30036578 2328510..2329514 C 1 NC_031671.1 GID Complex regulatory subunit; binds GID Complex in response to glucose through interactions with complex member Vid28p; regulates fructose-1,6-bisphosphatase (FBPase) targeting to the vacuole; promotes proteasome-dependent catabolite degradation of FBPase; peripheral membrane protein located at Vid (vacuole import and degradation) vesicles; GO_component: GO:0034657 - GID complex [Evidence IDA] [PMID 16872538]; GO_component: GO:0034657 - GID complex [Evidence IDA] [PMID 18508925]; GO_component: GO:0016023 - cytoplasmic membrane-bounded vesicle [Evidence IDA] [PMID 9508768]; GO_component: GO:0031410 - cytoplasmic vesicle [Evidence IEA]; GO_component: GO:0030659 - cytoplasmic vesicle membrane [Evidence IEA]; GO_component: GO:0019898 - extrinsic component of membrane [Evidence IDA] [PMID 9508768]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0045721 - negative regulation of gluconeogenesis [Evidence IMP] [PMID 12686616]; GO_process: GO:0043161 - proteasome-mediated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 12686616]; GO_process: GO:0043161 - proteasome-mediated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 15358789]; GO_process: GO:0006623 - protein targeting to vacuole [Evidence IMP] [PMID 12730205]; GO_process: GO:0006623 - protein targeting to vacuole [Evidence IMP] [PMID 9508768]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0007039 - vacuolar protein catabolic process [Evidence IMP] [PMID 15358789]; GO_process: GO:0007039 - vacuolar protein catabolic process [Evidence IMP] [PMID 9508768]; glucose-induced degradation complex subunit VID24 2329514 VID24 30036578 VID24 Sugiyamaella lignohabitans glucose-induced degradation complex subunit VID24 XP_018734101.1 2328510 D 796027 CDS AWJ20_4446 30036579 complement(2329808..2331589) C 1 NC_031671.1 D-lactate dehydrogenase; oxidizes D-lactate to pyruvate, transcription is heme-dependent, repressed by glucose, and derepressed in ethanol or lactate; located in the mitochondrial inner membrane; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IDA] [PMID 9525904]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 11502169]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0004458 - D-lactate dehydrogenase (cytochrome) activity [Evidence IEA]; GO_function: GO:0004458 - D-lactate dehydrogenase (cytochrome) activity [Evidence IMP,ISS] [PMID 8492799]; GO_function: GO:0008762 - UDP-N-acetylmuramate dehydrogenase activity [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0016614 - oxidoreductase activity, acting on CH-OH group of donors [Evidence IEA]; GO_process: GO:0009060 - aerobic respiration [Evidence IMP] [PMID 8492799]; GO_process: GO:0044262 - cellular carbohydrate metabolic process [Evidence IMP] [PMID 8492799]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; Dld1p 2331589 DLD1 30036579 DLD1 Sugiyamaella lignohabitans Dld1p XP_018734102.1 2329808 R 796027 CDS AWJ20_4447 30036580 2332724..2333389 C 1 NC_031671.1 C-4 methyl sterol oxidase; catalyzes the first of three steps required to remove two C-4 methyl groups from an intermediate in ergosterol biosynthesis; mutants accumulate the sterol intermediate 4,4-dimethylzymosterol; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IDA] [PMID 8663358]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 8663358]; GO_function: GO:0000254 - C-4 methylsterol oxidase activity [Evidence IEA]; GO_function: GO:0000254 - C-4 methylsterol oxidase activity [Evidence IDA] [PMID 8663358]; GO_function: GO:0005506 - iron ion binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_process: GO:0006696 - ergosterol biosynthetic process [Evidence IDA] [PMID 8663358]; GO_process: GO:0006633 - fatty acid biosynthetic process [Evidence IEA]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0006694 - steroid biosynthetic process [Evidence IEA]; GO_process: GO:0008202 - steroid metabolic process [Evidence IEA]; GO_process: GO:0016126 - sterol biosynthetic process [Evidence IEA]; methylsterol monooxygenase 2333389 ERG25 30036580 ERG25 Sugiyamaella lignohabitans methylsterol monooxygenase XP_018734103.1 2332724 D 796027 CDS AWJ20_4448 30036581 2338403..2339182 C 1 NC_031671.1 DNA Topoisomerase III; conserved protein that functions in a complex with Sgs1p and Rmi1p to relax single-stranded negatively-supercoiled DNA preferentially; DNA catenation/decatenation activity stimulated by RPA and Sgs1p-Top2p-Rmi1p; involved in telomere stability and regulation of mitotic recombination; GO_component: GO:0031422 - RecQ helicase-Topo III complex [Evidence IPI] [PMID 15889139]; GO_component: GO:0031422 - RecQ helicase-Topo III complex [Evidence IDA] [PMID 15899853]; GO_component: GO:0005694 - chromosome [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IC] [PMID 1324925]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0003916 - DNA topoisomerase activity [Evidence IEA,IEA]; GO_function: GO:0003916 - DNA topoisomerase activity [Evidence IDA] [PMID 22885009]; GO_function: GO:0003917 - DNA topoisomerase type I activity [Evidence IEA,IEA]; GO_function: GO:0003917 - DNA topoisomerase type I activity [Evidence IDA] [PMID 1324925]; GO_function: GO:0016853 - isomerase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006265 - DNA topological change [Evidence IEA]; GO_process: GO:0006265 - DNA topological change [Evidence IDA] [PMID 22885009]; GO_process: GO:0007064 - mitotic sister chromatid cohesion [Evidence IMP] [PMID 17571075]; GO_process: GO:0007131 - reciprocal meiotic recombination [Evidence IGI,IMP] [PMID 1328869]; GO_process: GO:0000018 - regulation of DNA recombination [Evidence IMP] [PMID 1328869]; GO_process: GO:0007004 - telomere maintenance via telomerase [Evidence IMP] [PMID 7708702]; DNA topoisomerase 3 2339182 TOP3 30036581 TOP3 Sugiyamaella lignohabitans DNA topoisomerase 3 XP_018734104.1 2338403 D 796027 CDS AWJ20_4449 30036582 2339215..2340084 C 1 NC_031671.1 DNA Topoisomerase III; conserved protein that functions in a complex with Sgs1p and Rmi1p to relax single-stranded negatively-supercoiled DNA preferentially; DNA catenation/decatenation activity stimulated by RPA and Sgs1p-Top2p-Rmi1p; involved in telomere stability and regulation of mitotic recombination; GO_component: GO:0031422 - RecQ helicase-Topo III complex [Evidence IPI] [PMID 15889139]; GO_component: GO:0031422 - RecQ helicase-Topo III complex [Evidence IDA] [PMID 15899853]; GO_component: GO:0005694 - chromosome [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IC] [PMID 1324925]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0003916 - DNA topoisomerase activity [Evidence IEA,IEA]; GO_function: GO:0003916 - DNA topoisomerase activity [Evidence IDA] [PMID 22885009]; GO_function: GO:0003917 - DNA topoisomerase type I activity [Evidence IEA,IEA]; GO_function: GO:0003917 - DNA topoisomerase type I activity [Evidence IDA] [PMID 1324925]; GO_function: GO:0016853 - isomerase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006265 - DNA topological change [Evidence IEA]; GO_process: GO:0006265 - DNA topological change [Evidence IDA] [PMID 22885009]; GO_process: GO:0007064 - mitotic sister chromatid cohesion [Evidence IMP] [PMID 17571075]; GO_process: GO:0007131 - reciprocal meiotic recombination [Evidence IGI,IMP] [PMID 1328869]; GO_process: GO:0000018 - regulation of DNA recombination [Evidence IMP] [PMID 1328869]; GO_process: GO:0007004 - telomere maintenance via telomerase [Evidence IMP] [PMID 7708702]; DNA topoisomerase 3 2340084 TOP3 30036582 TOP3 Sugiyamaella lignohabitans DNA topoisomerase 3 XP_018734105.1 2339215 D 796027 CDS AWJ20_4450 30036584 complement(2340212..2342455) C 1 NC_031671.1 FG-nucleoporin NUP42 2342455 NUP42 30036584 NUP42 Sugiyamaella lignohabitans FG-nucleoporin NUP42 XP_018734106.1 2340212 R 796027 CDS AWJ20_4451 30036585 complement(2344753..2345187) C 1 NC_031671.1 uncharacterized protein 2345187 30036585 AWJ20_4451 Sugiyamaella lignohabitans uncharacterized protein XP_018734107.1 2344753 R 796027 CDS AWJ20_4452 30036586 complement(2345937..2347082) C 1 NC_031671.1 putative esterase 2347082 30036586 AWJ20_4452 Sugiyamaella lignohabitans putative esterase XP_018734108.1 2345937 R 796027 CDS AWJ20_4453 30036587 complement(2348096..2349337) C 1 NC_031671.1 D-serine dehydratase (aka D-serine ammonia-lyase); converts D-serine to pyruvate and ammonia by a reaction dependent on pyridoxal 5'-phosphate and zinc; may play a role in D-serine detoxification; L-serine is not a substrate; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0008721 - D-serine ammonia-lyase activity [Evidence IEA]; GO_function: GO:0008721 - D-serine ammonia-lyase activity [Evidence IDA] [PMID 17869212]; GO_function: GO:0008721 - D-serine ammonia-lyase activity [Evidence IDA] [PMID 17937657]; GO_function: GO:0016829 - lyase activity [Evidence IEA]; GO_process: GO:0070178 - D-serine metabolic process [Evidence IMP] [PMID 17937657]; D-serine ammonia-lyase DSD1 2349337 DSD1 30036587 DSD1 Sugiyamaella lignohabitans D-serine ammonia-lyase DSD1 XP_018734109.1 2348096 R 796027 CDS AWJ20_4454 30036588 complement(2349925..2351553) C 1 NC_031671.1 lysine methyltransferase Set8 (predicted) 2351553 set8 30036588 set8 Sugiyamaella lignohabitans lysine methyltransferase Set8 (predicted) XP_018734110.1 2349925 R 796027 CDS AWJ20_4455 30036589 2351971..2352708 C 1 NC_031671.1 eIF3j component of translation initiation factor 3 (eIF3); dual function protein involved in translation initiation as a substoichiometric component (eIF3j) of eIF3; required for processing of 20S pre-rRNA; required at post-transcriptional step for efficient retrotransposition; absence results in decreased Ty1 Gag:GFP protein levels; binds to eIF3 subunits Rpg1p and Prt1p and 18S rRNA; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA,IEA]; GO_component: GO:0016282 - eukaryotic 43S preinitiation complex [Evidence IEA]; GO_component: GO:0033290 - eukaryotic 48S preinitiation complex [Evidence IEA]; GO_component: GO:0005852 - eukaryotic translation initiation factor 3 complex [Evidence IEA,IEA]; GO_component: GO:0005852 - eukaryotic translation initiation factor 3 complex [Evidence IPI] [PMID 11179233]; GO_function: GO:0003743 - translation initiation factor activity [Evidence IEA,IEA,IEA]; GO_function: GO:0003743 - translation initiation factor activity [Evidence IPI,ISS] [PMID 11179233]; GO_process: GO:0002181 - cytoplasmic translation [Evidence IPI,ISS] [PMID 11179233]; GO_process: GO:0001731 - formation of translation preinitiation complex [Evidence IEA]; GO_process: GO:0000462 - maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 11560931]; GO_process: GO:0006446 - regulation of translational initiation [Evidence IEA]; GO_process: GO:0006412 - translation [Evidence IEA]; GO_process: GO:0006413 - translational initiation [Evidence IEA,IEA]; Hcr1p 2352708 HCR1 30036589 HCR1 Sugiyamaella lignohabitans Hcr1p XP_018734111.1 2351971 D 796027 CDS AWJ20_4456 30036590 complement(2354132..2356783) C 1 NC_031671.1 Csc1p 2356783 30036590 AWJ20_4456 Sugiyamaella lignohabitans Csc1p XP_018734112.1 2354132 R 796027 CDS AWJ20_4457 30036591 complement(2357336..2360158) C 1 NC_031671.1 mRNA cleavage and polyadenylation specificity factor complex associated protein 2360158 30036591 AWJ20_4457 Sugiyamaella lignohabitans mRNA cleavage and polyadenylation specificity factor complex associated protein XP_018734113.1 2357336 R 796027 CDS AWJ20_4458 30036592 2362866..2365043 C 1 NC_031671.1 Mitochondrial transcription elongation factor; DEAD-box protein; required for efficient splicing of mitochondrial Group I and II introns; non-polar RNA helicase that also facilities strand annealing; promotes RNA folding by stabilizing an early assembly intermediate; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA]; GO_component: GO:0005759 - mitochondrial matrix [Evidence IMP] [PMID 2535893]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004004 - ATP-dependent RNA helicase activity [Evidence IDA] [PMID 17081564]; GO_function: GO:0008026 - ATP-dependent helicase activity [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IDA] [PMID 17081564]; GO_function: GO:0033592 - RNA strand annealing activity [Evidence IDA] [PMID 17081564]; GO_function: GO:0004386 - helicase activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0000372 - Group I intron splicing [Evidence IMP] [PMID 15618406]; GO_process: GO:0000373 - Group II intron splicing [Evidence IMP] [PMID 15618406]; GO_process: GO:0000373 - Group II intron splicing [Evidence IDA] [PMID 17081564]; GO_process: GO:0034337 - RNA folding [Evidence IMP] [PMID 21045551]; GO_process: GO:0008380 - RNA splicing [Evidence IEA]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0006417 - regulation of translation [Evidence IEA]; GO_process: GO:0006392 - transcription elongation from mitochondrial promoter [Evidence IDA,IMP] [PMID 24732805]; Mss116p 2365043 MSS116 30036592 MSS116 Sugiyamaella lignohabitans Mss116p XP_018734114.1 2362866 D 796027 CDS AWJ20_4459 30036593 complement(2365325..2366908) C 1 NC_031671.1 Putative RNA binding hypothetical protein; localizes to stress granules induced by glucose deprivation; predicted to be involved in ribosome biogenesis; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0010494 - cytoplasmic stress granule [Evidence IDA] [PMID 18981231]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; Nrp1p 2366908 NRP1 30036593 NRP1 Sugiyamaella lignohabitans Nrp1p XP_018734115.1 2365325 R 796027 CDS AWJ20_4460 30036595 2368160..2370664 C 1 NC_031671.1 Phosphatidylinositol (PI) 3-kinase that synthesizes PI-3-phosphate; forms membrane-associated signal transduction complex with Vps15p to regulate protein sorting; activated by the GTP-bound form of Gpa1p; a fraction is localized, with Vps15p, to nuclear pores at nucleus-vacuole junctions and may facilitate transcription elongation for genes positioned at the nuclear periphery; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA,IEA]; GO_component: GO:0005768 - endosome [Evidence IEA]; GO_component: GO:0005768 - endosome [Evidence IDA] [PMID 16421251]; GO_component: GO:0010008 - endosome membrane [Evidence IEA]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 16421251]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 19001347]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005643 - nuclear pore [Evidence IDA] [PMID 23335340]; GO_component: GO:0071561 - nucleus-vacuole junction [Evidence IDA] [PMID 23335340]; GO_component: GO:0005777 - peroxisome [Evidence IDA] [PMID 21121900]; GO_component: GO:0034271 - phosphatidylinositol 3-kinase complex I [Evidence IDA] [PMID 11157979]; GO_component: GO:0034272 - phosphatidylinositol 3-kinase complex II [Evidence IDA] [PMID 11157979]; GO_component: GO:0000407 - pre-autophagosomal structure [Evidence IDA] [PMID 16421251]; GO_function: GO:0016303 - 1-phosphatidylinositol-3-kinase activity [Evidence IEA,IEA]; GO_function: GO:0016303 - 1-phosphatidylinositol-3-kinase activity [Evidence IDA] [PMID 7989323]; GO_function: GO:0016303 - 1-phosphatidylinositol-3-kinase activity [Evidence IDA,IMP] [PMID 8385367]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016773 - phosphotransferase activity, alcohol group as acceptor [Evidence IEA]; GO_function: GO:0004672 - protein kinase activity [Evidence IDA] [PMID 7989323]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016772 - transferase activity, transferring phosphorus-containing groups [Evidence IEA]; GO_process: GO:0030242 - peroxisome degradation [Evidence IMP] [PMID 21121900]; GO_process: GO:0046854 - phosphatidylinositol phosphorylation [Evidence IEA]; GO_process: GO:0046854 - phosphatidylinositol phosphorylation [Evidence IDA] [PMID 7989323]; GO_process: GO:0046854 - phosphatidylinositol phosphorylation [Evidence IDA,IMP] [PMID 8385367]; GO_process: GO:0036092 - phosphatidylinositol-3-phosphate biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0048015 - phosphatidylinositol-mediated signaling [Evidence IEA]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; GO_process: GO:0032968 - positive regulation of transcription elongation from RNA polymerase II promoter [Evidence IMP] [PMID 23335340]; GO_process: GO:0006468 - protein phosphorylation [Evidence IDA] [PMID 7989323]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; phosphatidylinositol 3-kinase VPS34 2370664 VPS34 30036595 VPS34 Sugiyamaella lignohabitans phosphatidylinositol 3-kinase VPS34 XP_018734116.1 2368160 D 796027 CDS AWJ20_4461 30036596 complement(2370798..2371934) C 1 NC_031671.1 Bifunctional alcohol dehydrogenase and formaldehyde dehydrogenase; formaldehyde dehydrogenase activity is glutathione-dependent; functions in formaldehyde detoxification and formation of long chain and complex alcohols, regulated by Hog1p-Sko1p; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0051903 - S-(hydroxymethyl)glutathione dehydrogenase activity [Evidence IEA,IEA]; GO_function: GO:0051903 - S-(hydroxymethyl)glutathione dehydrogenase activity [Evidence IDA] [PMID 8483449]; GO_function: GO:0004022 - alcohol dehydrogenase (NAD) activity [Evidence IEA]; GO_function: GO:0004022 - alcohol dehydrogenase (NAD) activity [Evidence IMP] [PMID 12499363]; GO_function: GO:0004022 - alcohol dehydrogenase (NAD) activity [Evidence IDA] [PMID 8483449]; GO_function: GO:0033833 - hydroxymethylfurfural reductase (NADH) activity [Evidence IMP] [PMID 16652391]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0000947 - amino acid catabolic process to alcohol via Ehrlich pathway [Evidence IGI] [PMID 12499363]; GO_process: GO:0006069 - ethanol oxidation [Evidence IEA]; GO_process: GO:0046294 - formaldehyde catabolic process [Evidence IDA] [PMID 8483449]; GO_process: GO:0033859 - furaldehyde metabolic process [Evidence IMP] [PMID 16652391]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; bifunctional alcohol dehydrogenase/S-(hydroxymethyl)glutathione dehydrogenase 2371934 SFA1 30036596 SFA1 Sugiyamaella lignohabitans bifunctional alcohol dehydrogenase/S-(hydroxymethyl)glutathione dehydrogenase XP_018734117.1 2370798 R 796027 CDS AWJ20_4462 30036597 2370879..2371415 C 1 NC_031671.1 uncharacterized protein 2371415 30036597 AWJ20_4462 Sugiyamaella lignohabitans uncharacterized protein XP_018734118.1 2370879 D 796027 CDS AWJ20_4463 30036598 complement(2372588..2373310) C 1 NC_031671.1 Subunit of the CoA-Synthesizing Protein Complex (CoA-SPC); subunits of this complex are: Cab2p, Cab3p, Cab4p, Cab5p, Sis2p and Vhs3p; probable dephospho-CoA kinase (DPCK) that catalyzes the last step in coenzyme A biosynthesis; null mutant lethality is complemented by E. coli coaE (encoding DPCK); detected in purified mitochondria in high-throughput studies; also localized to lipid droplets; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA,IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 14690591]; GO_component: GO:0005811 - lipid particle [Evidence IDA] [PMID 24868093]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005635 - nuclear envelope [Evidence IDA] [PMID 14690591]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004140 - dephospho-CoA kinase activity [Evidence IEA,IEA]; GO_function: GO:0004140 - dephospho-CoA kinase activity [Evidence ISS] [PMID 10592175]; GO_function: GO:0004140 - dephospho-CoA kinase activity [Evidence ISS] [PMID 14690591]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0015937 - coenzyme A biosynthetic process [Evidence IEA,IEA,IEA]; GO_process: GO:0015937 - coenzyme A biosynthetic process [Evidence ISS] [PMID 10592175]; GO_process: GO:0015937 - coenzyme A biosynthetic process [Evidence IGI] [PMID 19266201]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; putative dephospho-CoA kinase 2373310 CAB5 30036598 CAB5 Sugiyamaella lignohabitans putative dephospho-CoA kinase XP_018734119.1 2372588 R 796027 CDS AWJ20_4464 30036599 2374449..2377097 C 1 NC_031671.1 2-dehydropantoate 2-reductase; part of the pantothenic acid pathway, structurally homologous to E. coli panE; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0008677 - 2-dehydropantoate 2-reductase activity [Evidence IEA,IEA]; GO_function: GO:0008677 - 2-dehydropantoate 2-reductase activity [Evidence ISS] [PMID 11154694]; GO_function: GO:0050661 - NADP binding [Evidence IEA]; GO_function: GO:0050662 - coenzyme binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0015940 - pantothenate biosynthetic process [Evidence IEA,IEA,IEA]; GO_process: GO:0015940 - pantothenate biosynthetic process [Evidence ISS] [PMID 11154694]; 2-dehydropantoate 2-reductase PAN5 2377097 PAN5 30036599 PAN5 Sugiyamaella lignohabitans 2-dehydropantoate 2-reductase PAN5 XP_018734120.1 2374449 D 796027 CDS AWJ20_4465 30036600 complement(2377286..2378401) C 1 NC_031671.1 Ribosomal protein lysine methyltransferase; responsible for trimethylation of the lysine residue at position 3 of Rpl12Ap and Rpl12Bp; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0008168 - methyltransferase activity [Evidence IEA]; GO_function: GO:0016279 - protein-lysine N-methyltransferase activity [Evidence IDA] [PMID 17005568]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0032259 - methylation [Evidence IEA]; GO_process: GO:0018026 - peptidyl-lysine monomethylation [Evidence IDA] [PMID 17005568]; GO_process: GO:0018023 - peptidyl-lysine trimethylation [Evidence IMP] [PMID 17005568]; Rkm2p 2378401 RKM2 30036600 RKM2 Sugiyamaella lignohabitans Rkm2p XP_018734121.1 2377286 R 796027 CDS AWJ20_4466 30036601 2379023..2379430 C 1 NC_031671.1 uncharacterized protein 2379430 30036601 AWJ20_4466 Sugiyamaella lignohabitans uncharacterized protein XP_018734122.1 2379023 D 796027 CDS AWJ20_4467 30036602 2379826..2385129 C 1 NC_031671.1 E3 ubiquitin ligase (N-recognin); heterodimerizes with Rad6p to ubiquitinate substrates in the N-end rule pathway; role in endoplasmic reticulum-associated protein degradation (ERAD) in the absence of canonical ER membrane ligases or after stress; major role in targeting misfolded cytosolic proteins for degradation; regulates peptide transport via Cup9p ubiquitination; mutation in human UBR1 causes Johansson-Blizzard Syndrome (JBS); GO_component: GO:0005737 - cytoplasm [Evidence IGI,IMP] [PMID 20080635]; GO_component: GO:0008540 - proteasome regulatory particle, base subcomplex [Evidence IPI] [PMID 10688918]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence IEA]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence IMP] [PMID 10581257]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0030433 - ER-associated ubiquitin-dependent protein catabolic process [Evidence IGI,IMP] [PMID 23988329]; GO_process: GO:0071629 - cytoplasm-associated proteasomal ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 20080635]; GO_process: GO:0071629 - cytoplasm-associated proteasomal ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 22670231]; GO_process: GO:0030163 - protein catabolic process [Evidence IEA]; GO_process: GO:0000209 - protein polyubiquitination [Evidence IMP] [PMID 10581257]; GO_process: GO:0000209 - protein polyubiquitination [Evidence IMP] [PMID 2209542]; GO_process: GO:0016567 - protein ubiquitination [Evidence IEA]; GO_process: GO:0090089 - regulation of dipeptide transport [Evidence IMP] [PMID 9427760]; GO_process: GO:1990116 - ribosome-associated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 23358411]; GO_process: GO:0071596 - ubiquitin-dependent protein catabolic process via the N-end rule pathway [Evidence IMP] [PMID 2209542]; E3 ubiquitin-protein ligase UBR1 2385129 UBR1 30036602 UBR1 Sugiyamaella lignohabitans E3 ubiquitin-protein ligase UBR1 XP_018734123.1 2379826 D 796027 CDS AWJ20_4468 30036603 complement(2385618..2386805) C 1 NC_031671.1 Cytoplasmic tyrosyl-tRNA synthetase; required for cytoplasmic protein synthesis; interacts with positions 34 and 35 of the tRNATyr anticodon; mutations in human ortholog YARS are associated with Charcot-Marie-Tooth (CMT) neuropathies; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11359929]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA,IMP,ISS] [PMID 11359929]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004812 - aminoacyl-tRNA ligase activity [Evidence IEA,IEA]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_function: GO:0004831 - tyrosine-tRNA ligase activity [Evidence IEA,IEA]; GO_function: GO:0004831 - tyrosine-tRNA ligase activity [Evidence IDA] [PMID 782885]; GO_function: GO:0004831 - tyrosine-tRNA ligase activity [Evidence IDA,ISS] [PMID 8509419]; GO_process: GO:0006418 - tRNA aminoacylation for protein translation [Evidence IEA]; GO_process: GO:0006412 - translation [Evidence IEA]; GO_process: GO:0006437 - tyrosyl-tRNA aminoacylation [Evidence IEA]; GO_process: GO:0006437 - tyrosyl-tRNA aminoacylation [Evidence IDA] [PMID 782885]; GO_process: GO:0006437 - tyrosyl-tRNA aminoacylation [Evidence IDA] [PMID 8509419]; tyrosine--tRNA ligase TYS1 2386805 TYS1 30036603 TYS1 Sugiyamaella lignohabitans tyrosine--tRNA ligase TYS1 XP_018734124.1 2385618 R 796027 CDS AWJ20_4469 30036604 2387178..2387471 C 1 NC_031671.1 mago nashi protein 2387471 30036604 AWJ20_4469 Sugiyamaella lignohabitans mago nashi protein XP_018734125.1 2387178 D 796027 CDS AWJ20_4470 30036606 2387508..2387765 C 1 NC_031671.1 mago nashi protein 2387765 30036606 AWJ20_4470 Sugiyamaella lignohabitans mago nashi protein XP_018734126.1 2387508 D 796027 CDS AWJ20_4471 30036607 2388876..2390291 C 1 NC_031671.1 fun thirty related protein Fft1 2390291 30036607 AWJ20_4471 Sugiyamaella lignohabitans fun thirty related protein Fft1 XP_018734127.1 2388876 D 796027 CDS AWJ20_4472 30036608 2390625..2392220 C 1 NC_031671.1 DNA-dependent ATPase FUN30 2392220 FUN30 30036608 FUN30 Sugiyamaella lignohabitans DNA-dependent ATPase FUN30 XP_018734128.1 2390625 D 796027 CDS AWJ20_4473 30036609 2393514..2394632 C 1 NC_031671.1 Protein required for modification of wobble nucleosides in tRNA; acts with Elongator complex, Kti11p, and Kti12p; has a potential role in regulatory interactions between microtubules and the cell cycle; GO_component: GO:0005737 - cytoplasm [Evidence IPI] [PMID 13680156]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 18466297]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0007117 - budding cell bud growth [Evidence IGI,IMP] [PMID 13680156]; GO_process: GO:0000226 - microtubule cytoskeleton organization [Evidence IGI,IMP] [PMID 13680156]; GO_process: GO:0007017 - microtubule-based process [Evidence IGI,ISS] [PMID 8070652]; GO_process: GO:0002098 - tRNA wobble uridine modification [Evidence IMP] [PMID 18755837]; Ats1p 2394632 ATS1 30036609 ATS1 Sugiyamaella lignohabitans Ats1p XP_018734129.1 2393514 D 796027 CDS AWJ20_4474 30036610 2395693..2397702 C 1 NC_031671.1 serine/threonine protein kinase CDC7 2397702 CDC7 30036610 CDC7 Sugiyamaella lignohabitans serine/threonine protein kinase CDC7 XP_018734130.1 2395693 D 796027 CDS AWJ20_4475 30036611 2397989..2398939 C 1 NC_031671.1 Pre-mRNA-splicing factor CWC21 2398939 30036611 AWJ20_4475 Sugiyamaella lignohabitans Pre-mRNA-splicing factor CWC21 XP_018734131.1 2397989 D 796027 CDS AWJ20_4476 30036612 complement(2399040..2400572) C 1 NC_031671.1 Succinate semialdehyde dehydrogenase; involved in the utilization of gamma-aminobutyrate (GABA) as a nitrogen source; part of the 4-aminobutyrate and glutamate degradation pathways; localized to the cytoplasm; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0016620 - oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor [Evidence IEA]; GO_function: GO:0009013 - succinate-semialdehyde dehydrogenase [NAD(P)+] activity [Evidence IEA,IEA]; GO_function: GO:0009013 - succinate-semialdehyde dehydrogenase [NAD(P)+] activity [Evidence IMP,ISS] [PMID 11031268]; GO_function: GO:0009013 - succinate-semialdehyde dehydrogenase [NAD(P)+] activity [Evidence IMP] [PMID 3888627]; GO_process: GO:0034599 - cellular response to oxidative stress [Evidence IMP] [PMID 11031268]; GO_process: GO:0009450 - gamma-aminobutyric acid catabolic process [Evidence IEA,IEA]; GO_process: GO:0009450 - gamma-aminobutyric acid catabolic process [Evidence IEP,IMP,ISS] [PMID 11031268]; GO_process: GO:0009450 - gamma-aminobutyric acid catabolic process [Evidence IMP] [PMID 3888627]; GO_process: GO:0006540 - glutamate decarboxylation to succinate [Evidence IGI,IMP,ISS] [PMID 11031268]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; succinate-semialdehyde dehydrogenase (NAD(P)(+)) 2400572 UGA2 30036612 UGA2 Sugiyamaella lignohabitans succinate-semialdehyde dehydrogenase (NAD(P)(+)) XP_018734132.1 2399040 R 796027 CDS AWJ20_4477 30036613 complement(2401082..2402569) C 1 NC_031671.1 High affinity nicotinic acid plasma membrane permease; responsible for uptake of low levels of nicotinic acid; expression of the gene increases in the absence of extracellular nicotinic acid or para-aminobenzoate (PABA); GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0005887 - integral component of plasma membrane [Evidence ISS] [PMID 9678606]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0015663 - nicotinamide mononucleotide transmembrane transporter activity [Evidence IMP] [PMID 10869563]; GO_process: GO:0015890 - nicotinamide mononucleotide transport [Evidence IEP,IMP] [PMID 10869563]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Tna1p 2402569 TNA1 30036613 TNA1 Sugiyamaella lignohabitans Tna1p XP_018734133.1 2401082 R 796027 CDS AWJ20_4478 30036614 complement(2403328..2405571) C 1 NC_031671.1 uncharacterized protein 2405571 30036614 AWJ20_4478 Sugiyamaella lignohabitans uncharacterized protein XP_018734134.1 2403328 R 796027 CDS AWJ20_4479 30036615 2406896..2408935 C 1 NC_031671.1 Transketolase; catalyzes conversion of xylulose-5-phosphate and ribose-5-phosphate to sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate in the pentose phosphate pathway; needed for synthesis of aromatic amino acids; TKL1 has a paralog, TKL2, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence ISS] [PMID 2843500]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0004802 - transketolase activity [Evidence IEA,IEA]; GO_function: GO:0004802 - transketolase activity [Evidence IMP,ISS] [PMID 8226984]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0006098 - pentose-phosphate shunt [Evidence IMP] [PMID 8299150]; GO_process: GO:0006098 - pentose-phosphate shunt [Evidence TAS] [PMID 8534086]; transketolase TKL1 2408935 TKL1 30036615 TKL1 Sugiyamaella lignohabitans transketolase TKL1 XP_018734135.1 2406896 D 796027 CDS AWJ20_4480 30036617 complement(2409994..2412699) C 1 NC_031671.1 Essential component of the conserved oligomeric Golgi complex; a cytosolic tethering complex (Cog1p through Cog8p) that functions in protein trafficking to mediate fusion of transport vesicles to Golgi compartments; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA]; GO_component: GO:0017119 - Golgi transport complex [Evidence IPI] [PMID 11703943]; GO_component: GO:0005801 - cis-Golgi network [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_function: GO:0008565 - protein transporter activity [Evidence TAS] [PMID 12077121]; GO_process: GO:0032258 - CVT pathway [Evidence IMP] [PMID 20065092]; GO_process: GO:0006888 - ER to Golgi vesicle-mediated transport [Evidence IGI] [PMID 10512869]; GO_process: GO:0006891 - intra-Golgi vesicle-mediated transport [Evidence IGI,IPI] [PMID 11703943]; GO_process: GO:0006886 - intracellular protein transport [Evidence IEA]; GO_process: GO:0016236 - macroautophagy [Evidence IMP] [PMID 20065092]; GO_process: GO:0030242 - peroxisome degradation [Evidence IMP] [PMID 20065092]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0000301 - retrograde transport, vesicle recycling within Golgi [Evidence IMP] [PMID 11703943]; GO_process: GO:0006810 - transport [Evidence IEA]; Cog3p 2412699 COG3 30036617 COG3 Sugiyamaella lignohabitans Cog3p XP_018734136.1 2409994 R 796027 CDS AWJ20_4481 30036618 2413693..2414547 C 1 NC_031671.1 Prephenate dehydrogenase involved in tyrosine biosynthesis; expression is dependent on phenylalanine levels; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0004665 - prephenate dehydrogenase (NADP+) activity [Evidence IEA,IEA]; GO_function: GO:0008977 - prephenate dehydrogenase activity [Evidence IEA]; GO_function: GO:0008977 - prephenate dehydrogenase activity [Evidence ISS] [PMID 2697638]; GO_process: GO:0009073 - aromatic amino acid family biosynthetic process [Evidence IEA]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0006571 - tyrosine biosynthetic process [Evidence IEA,IEA,IEA]; GO_process: GO:0006570 - tyrosine metabolic process [Evidence NAS] [PMID 11752249]; pprephenate dehydrogenase (NADP(+)) 2414547 TYR1 30036618 TYR1 Sugiyamaella lignohabitans pprephenate dehydrogenase (NADP(+)) XP_018734137.1 2413693 D 796027 CDS AWJ20_4482 30036619 complement(2415080..2416276) C 1 NC_031671.1 Nucleolar S-adenosylmethionine-dependent rRNA methyltransferase; methylates adenine (m1A) of the large subunit (LSU) rRNA at position 645; involved in pre-rRNA cleavage at site A2; mutation is synthetically lethal with a gar1 mutation; deletion disrupts telomere maintenance by influencing the expression of neighboring gene STN1; GO_component: GO:0005694 - chromosome [Evidence IEA]; GO_component: GO:0000781 - chromosome, telomeric region [Evidence IEA,IEA]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 10864042]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 23180764]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_function: GO:0008168 - methyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0016433 - rRNA (adenine) methyltransferase activity [Evidence ISS] [PMID 10864042]; GO_function: GO:0016433 - rRNA (adenine) methyltransferase activity [Evidence IMP] [PMID 23180764]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0032259 - methylation [Evidence IEA]; GO_process: GO:0031167 - rRNA methylation [Evidence IMP] [PMID 23180764]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0006364 - rRNA processing [Evidence IGI,IMP] [PMID 10864042]; GO_process: GO:0042273 - ribosomal large subunit biogenesis [Evidence IGI] [PMID 23180764]; Rrp8p 2416276 RRP8 30036619 RRP8 Sugiyamaella lignohabitans Rrp8p XP_018734138.1 2415080 R 796027 CDS AWJ20_4483 30036620 2417733..2418506 C 1 NC_031671.1 uncharacterized protein 2418506 30036620 AWJ20_4483 Sugiyamaella lignohabitans uncharacterized protein XP_018734139.1 2417733 D 796027 CDS AWJ20_4484 30036621 complement(2418677..2418976) C 1 NC_031671.1 uncharacterized protein 2418976 30036621 AWJ20_4484 Sugiyamaella lignohabitans uncharacterized protein XP_018734140.1 2418677 R 796027 CDS AWJ20_4485 30036622 2419676..2420620 C 1 NC_031671.1 NASP family CENP-A chaperone 2420620 sim3 30036622 sim3 Sugiyamaella lignohabitans NASP family CENP-A chaperone XP_018734141.1 2419676 D 796027 CDS AWJ20_4486 30036623 2420785..2421168 C 1 NC_031671.1 uncharacterized protein 2421168 30036623 AWJ20_4486 Sugiyamaella lignohabitans uncharacterized protein XP_018734142.1 2420785 D 796027 CDS AWJ20_4487 30036624 2424725..2426413 C 1 NC_031671.1 uncharacterized protein 2426413 30036624 AWJ20_4487 Sugiyamaella lignohabitans uncharacterized protein XP_018734143.1 2424725 D 796027 CDS AWJ20_4488 30036625 complement(join(2426716..2427564,2427670..2427672)) C 1 NC_031671.1 Component of the SSU processome; SSU processome is required for pre-18S rRNA processing; interacts with Mpp10p; member of a superfamily of proteins that contain a sigma(70)-like motif and associate with RNAs; GO_component: GO:0030686 - 90S preribosome [Evidence IDA] [PMID 12150911]; GO_component: GO:0034457 - Mpp10 complex [Evidence IDA] [PMID 17515605]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0032040 - small-subunit processome [Evidence IDA] [PMID 12068309]; GO_component: GO:0032040 - small-subunit processome [Evidence IDA] [PMID 12242301]; GO_function: GO:0042134 - rRNA primary transcript binding [Evidence IPI] [PMID 11864606]; GO_function: GO:0043047 - single-stranded telomeric DNA binding [Evidence IDA] [PMID 17803460]; GO_function: GO:0030515 - snoRNA binding [Evidence IDA] [PMID 15489263]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0006364 - rRNA processing [Evidence TAS] [PMID 10690410]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; Imp4p 2427672 IMP4 30036625 IMP4 Sugiyamaella lignohabitans Imp4p XP_018734144.1 2426716 R 796027 CDS AWJ20_4489 30036626 join(2428600..2429021,2429261..2431943) C 1 NC_031671.1 ATP-dependent RNA helicase of the SFI superfamily; involved in nonsense mediated mRNA decay; required for efficient translation termination at nonsense codons and targeting of NMD substrates to P-bodies; binds to the small ribosomal subunit via an interaction with Rps26; forms cytoplasmic foci upon DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14763985]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005844 - polysome [Evidence TAS] [PMID 10098411]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004004 - ATP-dependent RNA helicase activity [Evidence TAS] [PMID 10322435]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0008186 - RNA-dependent ATPase activity [Evidence TAS] [PMID 10322435]; GO_function: GO:0004386 - helicase activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence TAS] [PMID 10098411]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_function: GO:0043024 - ribosomal small subunit binding [Evidence IDA] [PMID 23801788]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0006310 - DNA recombination [Evidence IMP] [PMID 23390378]; GO_process: GO:0030466 - chromatin silencing at silent mating-type cassette [Evidence IGI] [PMID 16157874]; GO_process: GO:0008298 - intracellular mRNA localization [Evidence IMP] [PMID 16777600]; GO_process: GO:0000956 - nuclear-transcribed mRNA catabolic process [Evidence IMP] [PMID 16285926]; GO_process: GO:0070478 - nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay [Evidence IGI] [PMID 12769863]; GO_process: GO:0070478 - nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay [Evidence IGI,IMP] [PMID 12881429]; GO_process: GO:0000184 - nuclear-transcribed mRNA catabolic process, nonsense-mediated decay [Evidence IEA,IEA]; GO_process: GO:0000184 - nuclear-transcribed mRNA catabolic process, nonsense-mediated decay [Evidence TAS] [PMID 10098411]; GO_process: GO:0016567 - protein ubiquitination [Evidence IDA,IMP,IPI] [PMID 18676617]; GO_process: GO:0006449 - regulation of translational termination [Evidence TAS] [PMID 10098411]; GO_process: GO:0006452 - translational frameshifting [Evidence IMP] [PMID 15388879]; ATP-dependent RNA helicase NAM7 2431943 NAM7 30036626 NAM7 Sugiyamaella lignohabitans ATP-dependent RNA helicase NAM7 XP_018734145.1 2428600 D 796027 CDS AWJ20_4490 30036628 complement(join(2436134..2437738,2437805..2438263)) C 1 NC_031671.1 S-antigen, putative 2438263 30036628 AWJ20_4490 Sugiyamaella lignohabitans S-antigen, putative XP_018734146.1 2436134 R 796027 CDS AWJ20_4491 30036629 complement(join(2438819..2440996,2441780..2442226)) C 1 NC_031671.1 midasin (predicted) 2442226 30036629 AWJ20_4491 Sugiyamaella lignohabitans midasin (predicted) XP_018734147.1 2438819 R 796027 CDS AWJ20_4492 30036630 2446880..2451157 C 1 NC_031671.1 GTPase activating factor for Rsr1p/Bud1p; plays a role in spindle position checkpoint distinct from its role in bud site selection; required for both axial and bipolar budding patterns; mutants exhibit random budding in all cell types; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 10444589]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IBA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0031235 - intrinsic component of the cytoplasmic side of the plasma membrane [Evidence IBA]; GO_component: GO:0005628 - prospore membrane [Evidence IDA] [PMID 24390141]; GO_function: GO:0005096 - GTPase activator activity [Evidence IEA,IEA]; GO_function: GO:0005099 - Ras GTPase activator activity [Evidence IBA]; GO_function: GO:0005099 - Ras GTPase activator activity [Evidence IDA] [PMID 8371782]; GO_process: GO:0007120 - axial cellular bud site selection [Evidence IMP] [PMID 2065354]; GO_process: GO:0007120 - axial cellular bud site selection [Evidence IMP] [PMID 22558355]; GO_process: GO:0007121 - bipolar cellular bud site selection [Evidence IMP] [PMID 2065354]; GO_process: GO:0007163 - establishment or maintenance of cell polarity [Evidence IMP] [PMID 23783029]; GO_process: GO:0030447 - filamentous growth [Evidence IMP] [PMID 15645503]; GO_process: GO:0036267 - invasive filamentous growth [Evidence IMP] [PMID 23783029]; GO_process: GO:0031578 - mitotic spindle orientation checkpoint [Evidence IMP] [PMID 22558355]; GO_process: GO:0046580 - negative regulation of Ras protein signal transduction [Evidence IBA]; GO_process: GO:0043547 - positive regulation of GTPase activity [Evidence IEA,IEA]; GO_process: GO:0032320 - positive regulation of Ras GTPase activity [Evidence IBA]; GO_process: GO:0051056 - regulation of small GTPase mediated signal transduction [Evidence IEA]; GO_process: GO:0007165 - signal transduction [Evidence IEA]; Bud2p 2451157 BUD2 30036630 BUD2 Sugiyamaella lignohabitans Bud2p XP_018734148.1 2446880 D 796027 CDS AWJ20_4493 30036631 complement(2451551..2454400) C 1 NC_031671.1 uncharacterized protein 2454400 30036631 AWJ20_4493 Sugiyamaella lignohabitans uncharacterized protein XP_018734149.1 2451551 R 796027 CDS AWJ20_4494 30036632 complement(2457174..2457710) C 1 NC_031671.1 uncharacterized protein 2457710 30036632 AWJ20_4494 Sugiyamaella lignohabitans uncharacterized protein XP_018734150.1 2457174 R 796027 CDS AWJ20_4495 30036633 2458838..2459821 C 1 NC_031671.1 Topoisomerase II; relieves torsional strain in DNA by cleaving and re-sealing the phosphodiester backbone of both positively and negatively supercoiled DNA; cleaves complementary strands; localizes to axial cores in meiosis; required for replication slow zone (RSZ) breakage following Mec1p inactivation; GO_component: GO:0097047 - DNA replication termination region [Evidence IPI] [PMID 20797631]; GO_component: GO:0009330 - DNA topoisomerase complex (ATP-hydrolyzing) [Evidence IBA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 6088500]; GO_component: GO:0000795 - synaptonemal complex [Evidence IDA] [PMID 1315786]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0003916 - DNA topoisomerase activity [Evidence IEA]; GO_function: GO:0003918 - DNA topoisomerase type II (ATP-hydrolyzing) activity [Evidence IEA,IEA]; GO_function: GO:0003918 - DNA topoisomerase type II (ATP-hydrolyzing) activity [Evidence IDA] [PMID 6088500]; GO_function: GO:0003918 - DNA topoisomerase type II (ATP-hydrolyzing) activity [Evidence IDA] [PMID 6323017]; GO_function: GO:0008094 - DNA-dependent ATPase activity [Evidence IBA]; GO_function: GO:0016853 - isomerase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA,IEA]; GO_process: GO:0006259 - DNA metabolic process [Evidence IEA]; GO_process: GO:0006271 - DNA strand elongation involved in DNA replication [Evidence IMP] [PMID 2549254]; GO_process: GO:0006265 - DNA topological change [Evidence IEA]; GO_process: GO:0006265 - DNA topological change [Evidence IDA] [PMID 6088500]; GO_process: GO:0006268 - DNA unwinding involved in DNA replication [Evidence IMP] [PMID 24062159]; GO_process: GO:0006333 - chromatin assembly or disassembly [Evidence IMP] [PMID 9199287]; GO_process: GO:0031055 - chromatin remodeling at centromere [Evidence IMP] [PMID 18701701]; GO_process: GO:0044774 - mitotic DNA integrity checkpoint [Evidence IMP] [PMID 16651657]; GO_process: GO:0007131 - reciprocal meiotic recombination [Evidence IMP] [PMID 2156624]; GO_process: GO:0000019 - regulation of mitotic recombination [Evidence IMP] [PMID 2902925]; GO_process: GO:0097046 - replication fork progression beyond termination site [Evidence IMP] [PMID 20797631]; GO_process: GO:0000712 - resolution of meiotic recombination intermediates [Evidence IBA]; GO_process: GO:0000819 - sister chromatid segregation [Evidence IBA]; DNA topoisomerase 2 2459821 TOP2 30036633 TOP2 Sugiyamaella lignohabitans DNA topoisomerase 2 XP_018734151.1 2458838 D 796027 CDS AWJ20_4496 30036634 2460004..2463867 C 1 NC_031671.1 Topoisomerase II; relieves torsional strain in DNA by cleaving and re-sealing the phosphodiester backbone of both positively and negatively supercoiled DNA; cleaves complementary strands; localizes to axial cores in meiosis; required for replication slow zone (RSZ) breakage following Mec1p inactivation; GO_component: GO:0097047 - DNA replication termination region [Evidence IPI] [PMID 20797631]; GO_component: GO:0009330 - DNA topoisomerase complex (ATP-hydrolyzing) [Evidence IBA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 6088500]; GO_component: GO:0000795 - synaptonemal complex [Evidence IDA] [PMID 1315786]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0003916 - DNA topoisomerase activity [Evidence IEA]; GO_function: GO:0003918 - DNA topoisomerase type II (ATP-hydrolyzing) activity [Evidence IEA,IEA]; GO_function: GO:0003918 - DNA topoisomerase type II (ATP-hydrolyzing) activity [Evidence IDA] [PMID 6088500]; GO_function: GO:0003918 - DNA topoisomerase type II (ATP-hydrolyzing) activity [Evidence IDA] [PMID 6323017]; GO_function: GO:0008094 - DNA-dependent ATPase activity [Evidence IBA]; GO_function: GO:0016853 - isomerase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA,IEA]; GO_process: GO:0006259 - DNA metabolic process [Evidence IEA]; GO_process: GO:0006271 - DNA strand elongation involved in DNA replication [Evidence IMP] [PMID 2549254]; GO_process: GO:0006265 - DNA topological change [Evidence IEA]; GO_process: GO:0006265 - DNA topological change [Evidence IDA] [PMID 6088500]; GO_process: GO:0006268 - DNA unwinding involved in DNA replication [Evidence IMP] [PMID 24062159]; GO_process: GO:0006333 - chromatin assembly or disassembly [Evidence IMP] [PMID 9199287]; GO_process: GO:0031055 - chromatin remodeling at centromere [Evidence IMP] [PMID 18701701]; GO_process: GO:0044774 - mitotic DNA integrity checkpoint [Evidence IMP] [PMID 16651657]; GO_process: GO:0007131 - reciprocal meiotic recombination [Evidence IMP] [PMID 2156624]; GO_process: GO:0000019 - regulation of mitotic recombination [Evidence IMP] [PMID 2902925]; GO_process: GO:0097046 - replication fork progression beyond termination site [Evidence IMP] [PMID 20797631]; GO_process: GO:0000712 - resolution of meiotic recombination intermediates [Evidence IBA]; GO_process: GO:0000819 - sister chromatid segregation [Evidence IBA]; DNA topoisomerase 2 2463867 TOP2 30036634 TOP2 Sugiyamaella lignohabitans DNA topoisomerase 2 XP_018734152.1 2460004 D 796027 CDS AWJ20_4497 30036635 complement(2465001..2466143) C 1 NC_031671.1 uncharacterized protein 2466143 30036635 AWJ20_4497 Sugiyamaella lignohabitans uncharacterized protein XP_018734153.1 2465001 R 796027 CDS AWJ20_4498 30036636 2470929..2472470 C 1 NC_031671.1 retrotransposon-derived protein PEG10 isoform 1 2472470 30036636 AWJ20_4498 Sugiyamaella lignohabitans retrotransposon-derived protein PEG10 isoform 1 XP_018734154.1 2470929 D 796027 CDS AWJ20_4499 30036637 2481696..2483465 C 1 NC_031671.1 Putative transcription factor containing a C2H2 zinc finger; mutation affects transcriptional regulation of genes involved in growth on non-fermentable carbon sources, response to salt stress and cell wall biosynthesis; USV1 has a paralog, RGM1, that arose from the whole genome duplication; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 18667581]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA,IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19111667]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19158363]; GO_process: GO:0000436 - carbon catabolite activation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 18667581]; GO_process: GO:0061416 - regulation of transcription from RNA polymerase II promoter in response to salt stress [Evidence IMP] [PMID 18667581]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Usv1p 2483465 USV1 30036637 USV1 Sugiyamaella lignohabitans Usv1p XP_018734155.1 2481696 D 796027 CDS AWJ20_4500 30036640 complement(2485505..2488303) C 1 NC_031671.1 Gamma subunit of coatomer; coatomer is a heptameric protein complex that together with Arf1p forms the COPI coat; involved in ER to Golgi transport of selective cargo; GO_component: GO:0030126 - COPI vesicle coat [Evidence IEA]; GO_component: GO:0030126 - COPI vesicle coat [Evidence IDA] [PMID 1461285]; GO_component: GO:0030663 - COPI-coated vesicle membrane [Evidence IEA]; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0031410 - cytoplasmic vesicle [Evidence IEA]; GO_component: GO:0005768 - endosome [Evidence IEA,IEA]; GO_component: GO:0005768 - endosome [Evidence IDA] [PMID 17101773]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0030117 - membrane coat [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0005198 - structural molecule activity [Evidence IEA]; GO_process: GO:0006888 - ER to Golgi vesicle-mediated transport [Evidence IMP] [PMID 1461285]; GO_process: GO:0006886 - intracellular protein transport [Evidence IEA]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006890 - retrograde vesicle-mediated transport, Golgi to ER [Evidence IMP] [PMID 8001155]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IEA,IEA]; Sec21p 2488303 SEC21 30036640 SEC21 Sugiyamaella lignohabitans Sec21p XP_018734156.1 2485505 R 796027 CDS AWJ20_4501 30036641 2490137..2490691 C 1 NC_031671.1 uncharacterized protein 2490691 30036641 AWJ20_4501 Sugiyamaella lignohabitans uncharacterized protein XP_018734157.1 2490137 D 796027 CDS AWJ20_4502 30036642 2494111..2495370 C 1 NC_031671.1 Aspartic protease; member of the yapsin family of proteases involved in cell wall growth and maintenance; attached to the plasma membrane via a glycosylphosphatidylinositol (GPI) anchor; GO_component: GO:0031225 - anchored component of membrane [Evidence IEA]; GO_component: GO:0046658 - anchored component of plasma membrane [Evidence IDA,IPI] [PMID 11016834]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_function: GO:0004190 - aspartic-type endopeptidase activity [Evidence IEA,IEA]; GO_function: GO:0004190 - aspartic-type endopeptidase activity [Evidence IDA,ISS] [PMID 10191273]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_process: GO:0031505 - fungal-type cell wall organization [Evidence IGI] [PMID 16087741]; GO_process: GO:0006508 - proteolysis [Evidence IEA,IEA]; Yps3p 2495370 YPS3 30036642 YPS3 Sugiyamaella lignohabitans Yps3p XP_018734158.1 2494111 D 796027 CDS AWJ20_4503 30036643 complement(2499060..2500847) C 1 NC_031671.1 Dihydroxyacetone kinase; required for detoxification of dihydroxyacetone (DHA); involved in stress adaptation; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004371 - glycerone kinase activity [Evidence IEA,IEA]; GO_function: GO:0004371 - glycerone kinase activity [Evidence IDA] [PMID 12401799]; GO_function: GO:0004371 - glycerone kinase activity [Evidence ISS] [PMID 9038161]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0050354 - triokinase activity [Evidence IEA]; GO_process: GO:0019588 - anaerobic glycerol catabolic process [Evidence IEA]; GO_process: GO:0097237 - cellular response to toxic substance [Evidence IMP] [PMID 12401799]; GO_process: GO:0019563 - glycerol catabolic process [Evidence ISS] [PMID 9038161]; GO_process: GO:0006071 - glycerol metabolic process [Evidence IEA,IEA]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; Dak1p 2500847 DAK1 30036643 DAK1 Sugiyamaella lignohabitans Dak1p XP_018734159.1 2499060 R 796027 CDS AWJ20_4504 30036644 2501542..2501976 C 1 NC_031671.1 uncharacterized protein 2501976 30036644 AWJ20_4504 Sugiyamaella lignohabitans uncharacterized protein XP_018734160.1 2501542 D 796027 CDS AWJ20_4505 30036645 2502835..2504454 C 1 NC_031671.1 uncharacterized protein 2504454 30036645 AWJ20_4505 Sugiyamaella lignohabitans uncharacterized protein XP_018734161.1 2502835 D 796027 CDS AWJ20_4506 30036646 2509307..2510023 C 1 NC_031671.1 uncharacterized protein 2510023 30036646 AWJ20_4506 Sugiyamaella lignohabitans uncharacterized protein XP_018734162.1 2509307 D 796027 CDS AWJ20_4507 30036647 2511106..2511696 C 1 NC_031671.1 Mitochondrial ribosomal protein of the large subunit; overproduction suppresses mutations in the COX2 leader peptide-encoding region; GO_component: GO:0005762 - mitochondrial large ribosomal subunit [Evidence IPI] [PMID 12392552]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IPI] [PMID 12392552]; GO_process: GO:0032543 - mitochondrial translation [Evidence IC] [PMID 12392552]; mitochondrial 54S ribosomal protein YmL36 2511696 MRPL36 30036647 MRPL36 Sugiyamaella lignohabitans mitochondrial 54S ribosomal protein YmL36 XP_018734163.1 2511106 D 796027 CDS AWJ20_4508 30036648 2512212..2512643 C 1 NC_031671.1 17-kDa component of the U4/U6aU5 tri-snRNP; plays an essential role in pre-mRNA splicing, orthologue of hDIM1, the human U5-specific 15-kDa protein; GO_component: GO:0046540 - U4/U6 x U5 tri-snRNP complex [Evidence IDA] [PMID 10377396]; GO_component: GO:0046540 - U4/U6 x U5 tri-snRNP complex [Evidence IDA] [PMID 10449419]; GO_component: GO:0005682 - U5 snRNP [Evidence IDA] [PMID 11720284]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005681 - spliceosomal complex [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008380 - RNA splicing [Evidence IEA]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0000398 - mRNA splicing, via spliceosome [Evidence IPI] [PMID 10377396]; GO_process: GO:0000398 - mRNA splicing, via spliceosome [Evidence IMP] [PMID 10610776]; GO_process: GO:0000398 - mRNA splicing, via spliceosome [Evidence IMP] [PMID 11720284]; GO_process: GO:0007067 - mitotic nuclear division [Evidence IEA,IEA]; Dib1p 2512643 DIB1 30036648 DIB1 Sugiyamaella lignohabitans Dib1p XP_018734164.1 2512212 D 796027 CDS AWJ20_4509 30036649 2514663..2515097 C 1 NC_031671.1 Cytosolic aspartate aminotransferase involved in nitrogen metabolism; localizes to peroxisomes in oleate-grown cells; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 9288922]; GO_component: GO:0005777 - peroxisome [Evidence IEA,IEA]; GO_component: GO:0005777 - peroxisome [Evidence IDA,IMP] [PMID 9288922]; GO_function: GO:0004069 - L-aspartate:2-oxoglutarate aminotransferase activity [Evidence IEA]; GO_function: GO:0004069 - L-aspartate:2-oxoglutarate aminotransferase activity [Evidence IDA] [PMID 1859361]; GO_function: GO:0004069 - L-aspartate:2-oxoglutarate aminotransferase activity [Evidence IMP] [PMID 9288922]; GO_function: GO:0080130 - L-phenylalanine:2-oxoglutarate aminotransferase activity [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0030170 - pyridoxal phosphate binding [Evidence IEA]; GO_function: GO:0008483 - transaminase activity [Evidence IEA,IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006532 - aspartate biosynthetic process [Evidence IMP] [PMID 15780654]; GO_process: GO:0006532 - aspartate biosynthetic process [Evidence IMP] [PMID 9288922]; GO_process: GO:0009058 - biosynthetic process [Evidence IEA]; GO_process: GO:0006520 - cellular amino acid metabolic process [Evidence IEA]; aspartate transaminase AAT2 2515097 AAT2 30036649 AAT2 Sugiyamaella lignohabitans aspartate transaminase AAT2 XP_018734165.1 2514663 D 796027 CDS AWJ20_4510 30036651 2515415..2515891 C 1 NC_031671.1 Cytosolic aspartate aminotransferase involved in nitrogen metabolism; localizes to peroxisomes in oleate-grown cells; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 9288922]; GO_component: GO:0005777 - peroxisome [Evidence IEA,IEA]; GO_component: GO:0005777 - peroxisome [Evidence IDA,IMP] [PMID 9288922]; GO_function: GO:0004069 - L-aspartate:2-oxoglutarate aminotransferase activity [Evidence IEA]; GO_function: GO:0004069 - L-aspartate:2-oxoglutarate aminotransferase activity [Evidence IDA] [PMID 1859361]; GO_function: GO:0004069 - L-aspartate:2-oxoglutarate aminotransferase activity [Evidence IMP] [PMID 9288922]; GO_function: GO:0080130 - L-phenylalanine:2-oxoglutarate aminotransferase activity [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0030170 - pyridoxal phosphate binding [Evidence IEA]; GO_function: GO:0008483 - transaminase activity [Evidence IEA,IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006532 - aspartate biosynthetic process [Evidence IMP] [PMID 15780654]; GO_process: GO:0006532 - aspartate biosynthetic process [Evidence IMP] [PMID 9288922]; GO_process: GO:0009058 - biosynthetic process [Evidence IEA]; GO_process: GO:0006520 - cellular amino acid metabolic process [Evidence IEA]; aspartate transaminase AAT2 2515891 AAT2 30036651 AAT2 Sugiyamaella lignohabitans aspartate transaminase AAT2 XP_018734166.1 2515415 D 796027 CDS AWJ20_4511 30036652 complement(2516198..2516947) C 1 NC_031671.1 uncharacterized protein 2516947 30036652 AWJ20_4511 Sugiyamaella lignohabitans uncharacterized protein XP_018734167.1 2516198 R 796027 CDS AWJ20_4512 30036653 2521259..2522800 C 1 NC_031671.1 retrotransposon-derived protein PEG10 isoform 1 2522800 30036653 AWJ20_4512 Sugiyamaella lignohabitans retrotransposon-derived protein PEG10 isoform 1 XP_018734168.1 2521259 D 796027 CDS AWJ20_4513 30036654 2529254..2530786 C 1 NC_031671.1 uncharacterized protein 2530786 30036654 AWJ20_4513 Sugiyamaella lignohabitans uncharacterized protein XP_018734169.1 2529254 D 796027 CDS AWJ20_4514 30036655 complement(2531090..2532160) C 1 NC_031671.1 Mitogen-activated serine/threonine protein kinase involved in mating; phosphoactivated by Ste7p; substrates include Ste12p, Far1p, Bni1p, Sst2p; inhibits invasive growth during mating by phosphorylating Tec1p, promoting its; inhibits recruitment of Ste5p, Cdc42p-mediated asymmetry and mating morphogenesis; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 10233162]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 11781566]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 17952059]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 10233162]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 18417610]; GO_component: GO:0042597 - periplasmic space [Evidence IEA,IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004707 - MAP kinase activity [Evidence IEA,IEA]; GO_function: GO:0004707 - MAP kinase activity [Evidence IDA] [PMID 15620357]; GO_function: GO:0004707 - MAP kinase activity [Evidence IDA] [PMID 8384702]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0004672 - protein kinase activity [Evidence IEA]; GO_function: GO:0004672 - protein kinase activity [Evidence IDA] [PMID 16319894]; GO_function: GO:0004674 - protein serine/threonine kinase activity [Evidence IEA,IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016772 - transferase activity, transferring phosphorus-containing groups [Evidence IEA]; GO_process: GO:0000165 - MAPK cascade [Evidence IEA,IEA]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0007050 - cell cycle arrest [Evidence IMP] [PMID 10049917]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0000746 - conjugation [Evidence IEA]; GO_process: GO:0001403 - invasive growth in response to glucose limitation [Evidence IMP] [PMID 10652102]; GO_process: GO:0001403 - invasive growth in response to glucose limitation [Evidence IMP] [PMID 15620357]; GO_process: GO:0001403 - invasive growth in response to glucose limitation [Evidence IMP] [PMID 8001818]; GO_process: GO:0007067 - mitotic nuclear division [Evidence IEA]; GO_process: GO:0043409 - negative regulation of MAPK cascade [Evidence IPI] [PMID 16424299]; GO_process: GO:0010526 - negative regulation of transposition, RNA-mediated [Evidence IMP] [PMID 9566871]; GO_process: GO:0000750 - pheromone-dependent signal transduction involved in conjugation with cellular fusion [Evidence IDA] [PMID 15620357]; GO_process: GO:0000750 - pheromone-dependent signal transduction involved in conjugation with cellular fusion [Evidence IDA] [PMID 8384702]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; GO_process: GO:0046827 - positive regulation of protein export from nucleus [Evidence IMP] [PMID 22588722]; GO_process: GO:0006468 - protein phosphorylation [Evidence IEA]; GO_process: GO:0006468 - protein phosphorylation [Evidence IDA] [PMID 16319894]; GO_process: GO:0006468 - protein phosphorylation [Evidence IDA] [PMID 22588722]; GO_process: GO:0006468 - protein phosphorylation [Evidence IDA] [PMID 8384702]; mitogen-activated serine/threonine-protein kinase FUS3 2532160 FUS3 30036655 FUS3 Sugiyamaella lignohabitans mitogen-activated serine/threonine-protein kinase FUS3 XP_018734170.1 2531090 R 796027 CDS AWJ20_4515 30036656 2535258..2535737 C 1 NC_031671.1 Ribosomal 60S subunit protein L24B; not essential for translation but may be required for normal translation rate; homologous to mammalian ribosomal protein L24, no bacterial homolog; RPL24B has a paralog, RPL24A, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0022625 - cytosolic large ribosomal subunit [Evidence IDA] [PMID 11983894]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IDA] [PMID 6337137]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IC] [PMID 11983894]; GO_process: GO:0002181 - cytoplasmic translation [Evidence IC] [PMID 11983894]; ribosomal 60S subunit protein L24B 2535737 RPL24B 30036656 RPL24B Sugiyamaella lignohabitans ribosomal 60S subunit protein L24B XP_018734171.1 2535258 D 796027 CDS AWJ20_4516 30036657 2536390..2536974 C 1 NC_031671.1 uncharacterized protein 2536974 30036657 AWJ20_4516 Sugiyamaella lignohabitans uncharacterized protein XP_018734172.1 2536390 D 796027 CDS AWJ20_4517 30036658 complement(2537041..2538393) C 1 NC_031671.1 uncharacterized protein 2538393 30036658 AWJ20_4517 Sugiyamaella lignohabitans uncharacterized protein XP_018734173.1 2537041 R 796027 CDS AWJ20_4518 30036659 2540248..2543100 C 1 NC_031671.1 Microtubule-associated protein (MAP) of the XMAP215/Dis1 family; regulates microtubule dynamics during spindle orientation and metaphase chromosome alignment; interacts with spindle pole body component Spc72p; GO_component: GO:0005938 - cell cortex [Evidence IDA] [PMID 11511347]; GO_component: GO:0000778 - condensed nuclear chromosome kinetochore [Evidence IDA] [PMID 11511347]; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA]; GO_component: GO:0000776 - kinetochore [Evidence IDA] [PMID 11553724]; GO_component: GO:0005874 - microtubule [Evidence IEA]; GO_component: GO:0005819 - spindle [Evidence IEA]; GO_component: GO:0005876 - spindle microtubule [Evidence IDA] [PMID 11511347]; GO_component: GO:0005816 - spindle pole body [Evidence IEA]; GO_component: GO:0005816 - spindle pole body [Evidence IDA] [PMID 9606209]; GO_function: GO:0008017 - microtubule binding [Evidence IMP] [PMID 11553724]; GO_function: GO:0005200 - structural constituent of cytoskeleton [Evidence IPI] [PMID 9606209]; GO_process: GO:0007020 - microtubule nucleation [Evidence IPI] [PMID 9153752]; GO_process: GO:0030472 - mitotic spindle organization in nucleus [Evidence IGI] [PMID 11756468]; Stu2p 2543100 STU2 30036659 STU2 Sugiyamaella lignohabitans Stu2p XP_018734174.1 2540248 D 796027 CDS AWJ20_4519 30036660 complement(2543324..2544097) C 1 NC_031671.1 Mitochondrial protein that interacts with frataxin (Yfh1p); putative ortholog of mammalian electron transfer flavoprotein complex subunit ETF-beta; may have a role in oxidative stress response; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0009055 - electron carrier activity [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; Cir1p 2544097 CIR1 30036660 CIR1 Sugiyamaella lignohabitans Cir1p XP_018734175.1 2543324 R 796027 CDS AWJ20_4520 30036662 2545547..2546404 C 1 NC_031671.1 ATP-binding hypothetical protein; crystal structure resembles that of E.coli pantothenate kinase and other small kinases; null mutant is sensitive to expression of the top1-T722A allele; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0005524 - ATP binding [Evidence IDA] [PMID 14997573]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; Tda10p 2546404 TDA10 30036662 TDA10 Sugiyamaella lignohabitans Tda10p XP_018734176.1 2545547 D 796027 CDS AWJ20_4521 30036663 2547158..2547805 C 1 NC_031671.1 uncharacterized protein 2547805 30036663 AWJ20_4521 Sugiyamaella lignohabitans uncharacterized protein XP_018734177.1 2547158 D 796027 CDS AWJ20_4522 30036664 2548493..2550112 C 1 NC_031671.1 Putative transporter; member of a family of seven S. cerevisiae genes (AVT1-7) related to vesicular GABA-glycine transporters; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 11274162]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0005215 - transporter activity [Evidence ISS] [PMID 11274162]; GO_process: GO:0006865 - amino acid transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence ISS] [PMID 11274162]; Avt2p 2550112 AVT2 30036664 AVT2 Sugiyamaella lignohabitans Avt2p XP_018734178.1 2548493 D 796027 CDS AWJ20_4523 30036665 complement(2548963..2549253) C 1 NC_031671.1 formin (bud-site selection/polarity protein), putative 2549253 30036665 AWJ20_4523 Sugiyamaella lignohabitans formin (bud-site selection/polarity protein), putative XP_018734179.1 2548963 R 796027 CDS AWJ20_4524 30036666 complement(2551204..2553150) C 1 NC_031671.1 Subunit of a replication-pausing checkpoint complex; Tof1p-Mrc1p-Csm3p acts at the stalled replication fork to promote sister chromatid cohesion after DNA damage, facilitating gap repair of damaged DNA; interacts with the MCM helicase; relocalizes to the cytosol in response to hypoxia; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 22932476]; GO_component: GO:0000228 - nuclear chromosome [Evidence IPI] [PMID 12944972]; GO_component: GO:0043596 - nuclear replication fork [Evidence IDA] [PMID 16103218]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22932476]; GO_component: GO:0031298 - replication fork protection complex [Evidence IDA] [PMID 16531994]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006281 - DNA repair [Evidence IEA]; GO_process: GO:0006281 - DNA repair [Evidence IGI,IMP] [PMID 16219777]; GO_process: GO:0006260 - DNA replication [Evidence IMP] [PMID 16137625]; GO_process: GO:0000076 - DNA replication checkpoint [Evidence IMP,IPI] [PMID 12944972]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0043570 - maintenance of DNA repeat elements [Evidence IMP] [PMID 18321795]; GO_process: GO:0007126 - meiotic nuclear division [Evidence IEA]; GO_process: GO:0007064 - mitotic sister chromatid cohesion [Evidence IGI,IMP] [PMID 14742714]; GO_process: GO:0007064 - mitotic sister chromatid cohesion [Evidence IGI,IMP] [PMID 17483413]; GO_process: GO:0008156 - negative regulation of DNA replication [Evidence IEA]; GO_process: GO:0043111 - replication fork arrest [Evidence IMP] [PMID 16103218]; GO_process: GO:0043111 - replication fork arrest [Evidence IMP] [PMID 16418273]; GO_process: GO:0043111 - replication fork arrest [Evidence IMP] [PMID 17652453]; GO_process: GO:0048478 - replication fork protection [Evidence IMP] [PMID 16418273]; GO_process: GO:0048478 - replication fork protection [Evidence IMP] [PMID 18632578]; Tof1p 2553150 TOF1 30036666 TOF1 Sugiyamaella lignohabitans Tof1p XP_018734180.1 2551204 R 796027 CDS AWJ20_4525 30036667 complement(2553465..2554604) C 1 NC_031671.1 Subunit of a replication-pausing checkpoint complex; Tof1p-Mrc1p-Csm3p acts at the stalled replication fork to promote sister chromatid cohesion after DNA damage, facilitating gap repair of damaged DNA; interacts with the MCM helicase; relocalizes to the cytosol in response to hypoxia; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 22932476]; GO_component: GO:0000228 - nuclear chromosome [Evidence IPI] [PMID 12944972]; GO_component: GO:0043596 - nuclear replication fork [Evidence IDA] [PMID 16103218]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22932476]; GO_component: GO:0031298 - replication fork protection complex [Evidence IDA] [PMID 16531994]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006281 - DNA repair [Evidence IEA]; GO_process: GO:0006281 - DNA repair [Evidence IGI,IMP] [PMID 16219777]; GO_process: GO:0006260 - DNA replication [Evidence IMP] [PMID 16137625]; GO_process: GO:0000076 - DNA replication checkpoint [Evidence IMP,IPI] [PMID 12944972]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0043570 - maintenance of DNA repeat elements [Evidence IMP] [PMID 18321795]; GO_process: GO:0007126 - meiotic nuclear division [Evidence IEA]; GO_process: GO:0007064 - mitotic sister chromatid cohesion [Evidence IGI,IMP] [PMID 14742714]; GO_process: GO:0007064 - mitotic sister chromatid cohesion [Evidence IGI,IMP] [PMID 17483413]; GO_process: GO:0008156 - negative regulation of DNA replication [Evidence IEA]; GO_process: GO:0043111 - replication fork arrest [Evidence IMP] [PMID 16103218]; GO_process: GO:0043111 - replication fork arrest [Evidence IMP] [PMID 16418273]; GO_process: GO:0043111 - replication fork arrest [Evidence IMP] [PMID 17652453]; GO_process: GO:0048478 - replication fork protection [Evidence IMP] [PMID 16418273]; GO_process: GO:0048478 - replication fork protection [Evidence IMP] [PMID 18632578]; Tof1p 2554604 TOF1 30036667 TOF1 Sugiyamaella lignohabitans Tof1p XP_018734181.1 2553465 R 796027 CDS AWJ20_4526 30036668 complement(2554962..2555483) C 1 NC_031671.1 5'-methylthioribulose-1-phosphate dehydratase; acts in the methionine salvage pathway; potential Smt3p sumoylation substrate; expression downregulated by caspofungin and deletion mutant is caspofungin resistant; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0016829 - lyase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA,IEA]; GO_function: GO:0046570 - methylthioribulose 1-phosphate dehydratase activity [Evidence IEA,IEA]; GO_function: GO:0046570 - methylthioribulose 1-phosphate dehydratase activity [Evidence IMP] [PMID 18625006]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0019284 - L-methionine biosynthetic process from S-adenosylmethionine [Evidence IEA]; GO_process: GO:0019509 - L-methionine salvage from methylthioadenosine [Evidence IEA,IEA]; GO_process: GO:0019509 - L-methionine salvage from methylthioadenosine [Evidence IMP] [PMID 18625006]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0009086 - methionine biosynthetic process [Evidence IEA]; methylthioribulose 1-phosphate dehydratase MDE1 2555483 MDE1 30036668 MDE1 Sugiyamaella lignohabitans methylthioribulose 1-phosphate dehydratase MDE1 XP_018734182.1 2554962 R 796027 CDS AWJ20_4527 30036669 complement(2555526..2555732) C 1 NC_031671.1 5'-methylthioribulose-1-phosphate dehydratase; acts in the methionine salvage pathway; potential Smt3p sumoylation substrate; expression downregulated by caspofungin and deletion mutant is caspofungin resistant; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0016829 - lyase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA,IEA]; GO_function: GO:0046570 - methylthioribulose 1-phosphate dehydratase activity [Evidence IEA,IEA]; GO_function: GO:0046570 - methylthioribulose 1-phosphate dehydratase activity [Evidence IMP] [PMID 18625006]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0019284 - L-methionine biosynthetic process from S-adenosylmethionine [Evidence IEA]; GO_process: GO:0019509 - L-methionine salvage from methylthioadenosine [Evidence IEA,IEA]; GO_process: GO:0019509 - L-methionine salvage from methylthioadenosine [Evidence IMP] [PMID 18625006]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0009086 - methionine biosynthetic process [Evidence IEA]; methylthioribulose 1-phosphate dehydratase MDE1 2555732 MDE1 30036669 MDE1 Sugiyamaella lignohabitans methylthioribulose 1-phosphate dehydratase MDE1 XP_018734183.1 2555526 R 796027 CDS AWJ20_4528 30036670 2556299..2558479 C 1 NC_031671.1 E3 ubiquitin ligase; forms heterodimer with Rad6p to monoubiquinate histone H2B-K123, which is required for the subsequent methylation of histone H3-K4 and H3-K79; required for DSBR, transcription, silencing, and checkpoint control; interacts with RNA-binding protein Npl3p, linking histone ubiquitination to mRNA processing; Bre1p-dependent histone ubiquitination promotes pre-mRNA splicing; GO_component: GO:0000790 - nuclear chromatin [Evidence IDA] [PMID 12876294]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0003688 - DNA replication origin binding [Evidence IDA] [PMID 23103252]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA,IEA]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence IDA,IMP] [PMID 19531475]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0016568 - chromatin modification [Evidence IEA]; GO_process: GO:0006348 - chromatin silencing at telomere [Evidence IMP] [PMID 12535539]; GO_process: GO:0000724 - double-strand break repair via homologous recombination [Evidence IGI] [PMID 16783014]; GO_process: GO:0010390 - histone monoubiquitination [Evidence IMP] [PMID 12535538]; GO_process: GO:0010390 - histone monoubiquitination [Evidence IMP] [PMID 12535539]; GO_process: GO:0016574 - histone ubiquitination [Evidence IMP] [PMID 23103252]; GO_process: GO:0031573 - intra-S DNA damage checkpoint [Evidence IMP] [PMID 15632126]; GO_process: GO:0042138 - meiotic DNA double-strand break formation [Evidence IMP] [PMID 15280549]; GO_process: GO:0031571 - mitotic G1 DNA damage checkpoint [Evidence IMP] [PMID 16166626]; GO_process: GO:0031571 - mitotic G1 DNA damage checkpoint [Evidence IMP] [PMID 16783014]; GO_process: GO:0016567 - protein ubiquitination [Evidence IEA]; GO_process: GO:0030174 - regulation of DNA-dependent DNA replication initiation [Evidence IMP] [PMID 23103252]; GO_process: GO:0000722 - telomere maintenance via recombination [Evidence IGI] [PMID 23390378]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IGI] [PMID 15632065]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IPI] [PMID 19531475]; E3 ubiquitin-protein ligase BRE1 2558479 BRE1 30036670 BRE1 Sugiyamaella lignohabitans E3 ubiquitin-protein ligase BRE1 XP_018734184.1 2556299 D 796027 CDS AWJ20_4529 30036671 complement(2558736..2559620) C 1 NC_031671.1 Putative mitochondrial inner membrane transporter; proposed role in oleate metabolism and glutamate biosynthesis; member of the mitochondrial carrier (MCF) family; localizes to vacuole in response to H2O2; YMC1 has a paralog, YMC2, that arose from the whole genome duplication; GO_component: GO:0000324 - fungal-type vacuole [Evidence IDA] [PMID 23509072]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16140254]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0005342 - organic acid transmembrane transporter activity [Evidence IGI,ISS] [PMID 16140254]; GO_process: GO:0006839 - mitochondrial transport [Evidence IGI] [PMID 16140254]; GO_process: GO:0006810 - transport [Evidence IEA]; Ymc1p 2559620 YMC1 30036671 YMC1 Sugiyamaella lignohabitans Ymc1p XP_018734185.1 2558736 R 796027 CDS AWJ20_4530 30036673 2562350..2563387 C 1 NC_031671.1 Sensor-transducer of the stress-activated PKC1-MPK1 kinase pathway; involved in maintenance of cell wall integrity; required for mitophagy; involved in organization of the actin cytoskeleton; secretory pathway Wsc1p is required for the arrest of secretion response; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 17761172]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 19053807]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 9391108]; GO_function: GO:0004888 - transmembrane signaling receptor activity [Evidence IGI,ISS] [PMID 10430578]; GO_process: GO:0007266 - Rho protein signal transduction [Evidence IMP] [PMID 10348843]; GO_process: GO:0007266 - Rho protein signal transduction [Evidence IMP] [PMID 10508863]; GO_process: GO:0030036 - actin cytoskeleton organization [Evidence IMP] [PMID 10508863]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0030010 - establishment of cell polarity [Evidence IMP] [PMID 10508863]; GO_process: GO:0030010 - establishment of cell polarity [Evidence IMP] [PMID 24326069]; GO_process: GO:0031505 - fungal-type cell wall organization [Evidence IMP] [PMID 10348843]; GO_process: GO:0030242 - peroxisome degradation [Evidence IMP] [PMID 20385774]; GO_process: GO:0045807 - positive regulation of endocytosis [Evidence IMP] [PMID 14593073]; GO_process: GO:0045807 - positive regulation of endocytosis [Evidence IMP] [PMID 24326069]; GO_process: GO:0009408 - response to heat [Evidence IMP] [PMID 10348843]; GO_process: GO:0009408 - response to heat [Evidence IMP] [PMID 10508863]; GO_process: GO:0006970 - response to osmotic stress [Evidence IGI] [PMID 14871941]; GO_process: GO:0006950 - response to stress [Evidence IEA]; Slg1p 2563387 SLG1 30036673 SLG1 Sugiyamaella lignohabitans Slg1p XP_018734186.1 2562350 D 796027 CDS AWJ20_4531 30036674 2564764..2565354 C 1 NC_031671.1 Phosphatidylserine synthase; functions in phospholipid biosynthesis; catalyzes the reaction CDP-diaclyglycerol + L-serine = CMP + L-1-phosphatidylserine, transcriptionally repressed by myo-inositol and choline; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 2002005]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IDA] [PMID 6274497]; GO_component: GO:0043231 - intracellular membrane-bounded organelle [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IEA,IEA]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IDA] [PMID 3005242]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0031090 - organelle membrane [Evidence IEA]; GO_function: GO:0003882 - CDP-diacylglycerol-serine O-phosphatidyltransferase activity [Evidence IEA]; GO_function: GO:0003882 - CDP-diacylglycerol-serine O-phosphatidyltransferase activity [Evidence IDA] [PMID 6088519]; GO_function: GO:0003882 - CDP-diacylglycerol-serine O-phosphatidyltransferase activity [Evidence IMP] [PMID 6988386]; GO_function: GO:0016780 - phosphotransferase activity, for other substituted phosphate groups [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0006646 - phosphatidylethanolamine biosynthetic process [Evidence IEA]; GO_process: GO:0006659 - phosphatidylserine biosynthetic process [Evidence IDA] [PMID 6088519]; GO_process: GO:0006659 - phosphatidylserine biosynthetic process [Evidence IMP] [PMID 6988386]; GO_process: GO:0008654 - phospholipid biosynthetic process [Evidence IEA,IEA]; CDP-diacylglycerol-serine O-phosphatidyltransferase 2565354 CHO1 30036674 CHO1 Sugiyamaella lignohabitans CDP-diacylglycerol-serine O-phosphatidyltransferase XP_018734187.1 2564764 D 796027 CDS AWJ20_4532 30036675 2566956..2569379 C 1 NC_031671.1 Phosphoinositide PI4,5P(2) binding protein, forms a complex with Slm2p; acts downstream of Mss4p in a pathway regulating actin cytoskeleton organization in response to stress; phosphorylated by the TORC2 complex; protein abundance increases in response to DNA replication stress; SLM1 has a paralog, SLM2, that arose from the whole genome duplication; GO_component: GO:0031932 - TORC2 complex [Evidence IPI] [PMID 15689497]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0032126 - eisosome [Evidence IDA] [PMID 21451250]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0045121 - membrane raft [Evidence IDA] [PMID 19064668]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 15372071]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 15689497]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 16622836]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 17101780]; GO_function: GO:0005546 - phosphatidylinositol-4,5-bisphosphate binding [Evidence IDA] [PMID 15689497]; GO_function: GO:0005546 - phosphatidylinositol-4,5-bisphosphate binding [Evidence IDA] [PMID 21119626]; GO_function: GO:0046625 - sphingolipid binding [Evidence IDA] [PMID 21119626]; GO_process: GO:0031929 - TOR signaling [Evidence IPI] [PMID 15689497]; GO_process: GO:0030036 - actin cytoskeleton organization [Evidence IGI] [PMID 15372071]; GO_process: GO:0030036 - actin cytoskeleton organization [Evidence IGI] [PMID 15689497]; GO_process: GO:0051017 - actin filament bundle assembly [Evidence IGI] [PMID 15689497]; GO_process: GO:0070941 - eisosome assembly [Evidence IGI] [PMID 21451250]; GO_process: GO:0016197 - endosomal transport [Evidence IGI] [PMID 21451250]; GO_process: GO:0030950 - establishment or maintenance of actin cytoskeleton polarity [Evidence IPI] [PMID 15689497]; GO_process: GO:0001558 - regulation of cell growth [Evidence IGI,IPI] [PMID 15689497]; Slm1p 2569379 SLM1 30036675 SLM1 Sugiyamaella lignohabitans Slm1p XP_018734188.1 2566956 D 796027 CDS AWJ20_4533 30036676 complement(2569633..2571219) C 1 NC_031671.1 Alpha-1,2-mannosyltransferase; catalyzes sequential addition of the two terminal alpha 1,2-mannose residues to the Man5GlcNAc2-PP-dolichol intermediate during asparagine-linked glycosylation in the ER; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IDA] [PMID 11278778]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0004377 - GDP-Man:Man3GlcNAc2-PP-Dol alpha-1,2-mannosyltransferase activity [Evidence IEA]; GO_function: GO:0000026 - alpha-1,2-mannosyltransferase activity [Evidence IGI] [PMID 11278778]; GO_function: GO:0000026 - alpha-1,2-mannosyltransferase activity [Evidence IDA] [PMID 16878994]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA]; GO_process: GO:0009058 - biosynthetic process [Evidence IEA]; GO_process: GO:0097502 - mannosylation [Evidence IEA]; GO_process: GO:0006490 - oligosaccharide-lipid intermediate biosynthetic process [Evidence IDA] [PMID 16878994]; GO_process: GO:0006486 - protein glycosylation [Evidence IEA]; GO_process: GO:0006486 - protein glycosylation [Evidence IGI] [PMID 11278778]; alpha-1,2-mannosyltransferase ALG11 2571219 ALG11 30036676 ALG11 Sugiyamaella lignohabitans alpha-1,2-mannosyltransferase ALG11 XP_018734189.1 2569633 R 796027 CDS AWJ20_4534 30036677 complement(2572037..2572489) C 1 NC_031671.1 Component of the mitotic exit network; associates with and is required for the activation and Cdc15p-dependent phosphorylation of the Dbf2p kinase; required for cytokinesis and cell separation; component of the CCR4 transcriptional complex; relocalizes from cytoplasm to the nuclear periphery upon DNA replication stress; GO_component: GO:0005935 - cellular bud neck [Evidence IEA]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 11434459]; GO_component: GO:0005694 - chromosome [Evidence IEA]; GO_component: GO:0000775 - chromosome, centromeric region [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA]; GO_component: GO:0034399 - nuclear periphery [Evidence IDA] [PMID 22842922]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005816 - spindle pole body [Evidence IEA]; GO_component: GO:0005816 - spindle pole body [Evidence IDA] [PMID 11434459]; GO_function: GO:0019207 - kinase regulator activity [Evidence IDA] [PMID 11404483]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0006468 - protein phosphorylation [Evidence IDA] [PMID 11404483]; GO_process: GO:0007096 - regulation of exit from mitosis [Evidence TAS] [PMID 11404483]; Mob1p 2572489 MOB1 30036677 MOB1 Sugiyamaella lignohabitans Mob1p XP_018734190.1 2572037 R 796027 CDS AWJ20_4535 30036678 2574470..2576221 C 1 NC_031671.1 hypothetical protein; proposed to be involved in responding to environmental stresses; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; Fmp40p 2576221 FMP40 30036678 FMP40 Sugiyamaella lignohabitans Fmp40p XP_018734191.1 2574470 D 796027 CDS AWJ20_4536 30036679 2581042..2583876 C 1 NC_031671.1 ATP-dependent Lon protease; involved in degradation of misfolded proteins in mitochondria; required for biogenesis and maintenance of mitochondria; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA,IEA]; GO_component: GO:0005759 - mitochondrial matrix [Evidence IMP] [PMID 8146662]; GO_component: GO:0005759 - mitochondrial matrix [Evidence IMP] [PMID 8276800]; GO_component: GO:0042645 - mitochondrial nucleoid [Evidence IBA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA,IEA]; GO_function: GO:0004176 - ATP-dependent peptidase activity [Evidence IEA,IEA]; GO_function: GO:0004176 - ATP-dependent peptidase activity [Evidence IMP] [PMID 8146662]; GO_function: GO:0004176 - ATP-dependent peptidase activity [Evidence IMP] [PMID 8276800]; GO_function: GO:0016887 - ATPase activity [Evidence IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0070361 - mitochondrial light strand promoter anti-sense binding [Evidence IBA]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO_function: GO:0004252 - serine-type endopeptidase activity [Evidence IEA,IEA]; GO_function: GO:0008236 - serine-type peptidase activity [Evidence IEA]; GO_function: GO:0003697 - single-stranded DNA binding [Evidence IBA]; GO_function: GO:0003727 - single-stranded RNA binding [Evidence IBA]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA,IEA]; GO_process: GO:0034599 - cellular response to oxidative stress [Evidence IBA,IEA]; GO_process: GO:0051131 - chaperone-mediated protein complex assembly [Evidence IEA]; GO_process: GO:0051131 - chaperone-mediated protein complex assembly [Evidence IGI] [PMID 8810243]; GO_process: GO:0006515 - misfolded or incompletely synthesized protein catabolic process [Evidence IEA,IEA]; GO_process: GO:0006515 - misfolded or incompletely synthesized protein catabolic process [Evidence IMP] [PMID 16336126]; GO_process: GO:0006515 - misfolded or incompletely synthesized protein catabolic process [Evidence IGI,IMP] [PMID 7957078]; GO_process: GO:0007005 - mitochondrion organization [Evidence IBA]; GO_process: GO:0070407 - oxidation-dependent protein catabolic process [Evidence IBA,IEA]; GO_process: GO:0030163 - protein catabolic process [Evidence IEA]; GO_process: GO:0051260 - protein homooligomerization [Evidence IBA]; GO_process: GO:0006508 - proteolysis [Evidence IEA,IEA]; GO_process: GO:0090296 - regulation of mitochondrial DNA replication [Evidence IEA]; GO_process: GO:0001666 - response to hypoxia [Evidence IBA]; ATP-dependent Lon protease PIM1 2583876 PIM1 30036679 PIM1 Sugiyamaella lignohabitans ATP-dependent Lon protease PIM1 XP_018734192.1 2581042 D 796027 CDS AWJ20_4537 30036680 2585187..2585597 C 1 NC_031671.1 G protein gamma subunit; forms a dimer with Ste4p to activate the mating signaling pathway, forms a heterotrimer with Gpa1p and Ste4p to dampen signaling; C-terminus is palmitoylated and farnesylated, which are required for normal signaling; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 8995254]; GO_component: GO:0005834 - heterotrimeric G-protein complex [Evidence IEA]; GO_component: GO:0005834 - heterotrimeric G-protein complex [Evidence IMP] [PMID 2105453]; GO_component: GO:0005834 - heterotrimeric G-protein complex [Evidence IDA] [PMID 8995254]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 8995254]; GO_function: GO:0004871 - signal transducer activity [Evidence IEA,IEA]; GO_function: GO:0004871 - signal transducer activity [Evidence IMP] [PMID 2107073]; GO_process: GO:0007186 - G-protein coupled receptor signaling pathway [Evidence IEA]; GO_process: GO:0031684 - heterotrimeric G-protein complex cycle [Evidence IMP] [PMID 2107073]; GO_process: GO:0000750 - pheromone-dependent signal transduction involved in conjugation with cellular fusion [Evidence IMP] [PMID 3151178]; GO_process: GO:0019236 - response to pheromone [Evidence IEA]; GO_process: GO:0007165 - signal transduction [Evidence IEA]; Ste18p 2585597 STE18 30036680 STE18 Sugiyamaella lignohabitans Ste18p XP_018734193.1 2585187 D 796027 CDS AWJ20_4538 30036681 complement(2586053..2587744) C 1 NC_031671.1 Asparagine synthetase; catalyzes the synthesis of L-asparagine from L-aspartate in the asparagine biosynthetic pathway; ASN2 has a paralog, ASN1, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0004066 - asparagine synthase (glutamine-hydrolyzing) activity [Evidence IEA,IEA]; GO_function: GO:0004066 - asparagine synthase (glutamine-hydrolyzing) activity [Evidence IDA] [PMID 6105958]; GO_function: GO:0004066 - asparagine synthase (glutamine-hydrolyzing) activity [Evidence ISS] [PMID 8951815]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0070981 - L-asparagine biosynthetic process [Evidence IEA]; GO_process: GO:0006529 - asparagine biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0006529 - asparagine biosynthetic process [Evidence IGI] [PMID 8951815]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0006541 - glutamine metabolic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; asparagine synthase (glutamine-hydrolyzing) 2 2587744 ASN2 30036681 ASN2 Sugiyamaella lignohabitans asparagine synthase (glutamine-hydrolyzing) 2 XP_018734194.1 2586053 R 796027 CDS AWJ20_4539 30036682 complement(2588215..2589162) C 1 NC_031671.1 uncharacterized protein 2589162 30036682 AWJ20_4539 Sugiyamaella lignohabitans uncharacterized protein XP_018734195.1 2588215 R 796027 CDS AWJ20_4540 30036684 complement(2591367..2592065) C 1 NC_031671.1 uncharacterized protein 2592065 30036684 AWJ20_4540 Sugiyamaella lignohabitans uncharacterized protein XP_018734196.1 2591367 R 796027 CDS AWJ20_4541 30036685 complement(2595127..2597244) C 1 NC_031671.1 Hsp90 chaperone; redundant in function with Hsc82p; required for pheromone signaling, negative regulation of Hsf1p; docks with Tom70p for mitochondrial preprotein delivery; promotes telomerase DNA binding, nucleotide addition; protein abundance increases in response to DNA replication stress; contains two acid-rich unstructured regions that promote solubility of chaperone-substrate complexes; HSP82 has a paralog, HSC82, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0042623 - ATPase activity, coupled [Evidence IDA] [PMID 12235160]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0051082 - unfolded protein binding [Evidence IEA]; GO_function: GO:0051082 - unfolded protein binding [Evidence IDA] [PMID 10564510]; GO_process: GO:0006458 - 'de novo' protein folding [Evidence IDA] [PMID 10564510]; GO_process: GO:0006458 - 'de novo' protein folding [Evidence IMP] [PMID 9371781]; GO_process: GO:0000492 - box C/D snoRNP assembly [Evidence IMP] [PMID 18268103]; GO_process: GO:0032212 - positive regulation of telomere maintenance via telomerase [Evidence IDA,IMP,IPI] [PMID 17954556]; GO_process: GO:0043248 - proteasome assembly [Evidence IDA,IGI,IMP] [PMID 12853471]; GO_process: GO:0006457 - protein folding [Evidence IEA]; GO_process: GO:0042026 - protein refolding [Evidence IMP] [PMID 9371781]; GO_process: GO:0006626 - protein targeting to mitochondrion [Evidence IPI] [PMID 12526792]; GO_process: GO:0006970 - response to osmotic stress [Evidence IMP] [PMID 16487343]; GO_process: GO:0006950 - response to stress [Evidence IEA,IEA]; Hsp90 family chaperone HSP82 2597244 HSP82 30036685 HSP82 Sugiyamaella lignohabitans Hsp90 family chaperone HSP82 XP_018734197.1 2595127 R 796027 CDS AWJ20_4542 30036686 2597860..2599134 C 1 NC_031671.1 putative proteoglycan 4 2599134 30036686 AWJ20_4542 Sugiyamaella lignohabitans putative proteoglycan 4 XP_018734198.1 2597860 D 796027 CDS AWJ20_4543 30036687 complement(join(2597940..2598538,2599217..2602097)) C 1 NC_031671.1 Protein required for the nuclear import and biogenesis of RNA pol II; conflicting evidence on whether null mutant is viable with elongated buds, or inviable; interacts with Rpb2, Rpb3, Nup116p, Nup100p and components of the R2TP complex (Rvb1p, Rvb2p, Pih1p); similar to human TMCO7 gene; GO_component: GO:0005622 - intracellular [Evidence IDA] [PMID 23438601]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0044376 - RNA polymerase II complex localization to nucleus [Evidence IMP,IPI] [PMID 23438601]; Rtp1p 2602097 RTP1 30036687 RTP1 Sugiyamaella lignohabitans Rtp1p XP_018734199.1 2597940 R 796027 CDS AWJ20_4544 30036688 complement(join(2602332..2603426,2603540..2603560)) C 1 NC_031671.1 P-loop ATPase with similarity to human OLA1 and bacterial YchF; identified as specifically interacting with the proteasome; null mutant displays increased translation rate and increased readthrough of premature stop codons; protein abundance increases in response to hydrogen peroxide and to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 10684247]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016887 - ATPase activity [Evidence IEA]; GO_function: GO:0016887 - ATPase activity [Evidence IDA] [PMID 17430889]; GO_function: GO:0005525 - GTP binding [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0043023 - ribosomal large subunit binding [Evidence IEA]; GO_function: GO:0043022 - ribosome binding [Evidence IEA]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; Ola1p 2603560 OLA1 30036688 OLA1 Sugiyamaella lignohabitans Ola1p XP_018734200.1 2602332 R 796027 CDS AWJ20_4545 30036689 complement(2604471..2604992) C 1 NC_031671.1 Rab family GTPase; Ras-like GTP binding protein involved in the secretory pathway, required for fusion of endosome-derived vesicles with the late Golgi, maturation of the vacuolar carboxypeptidase Y; resides temporarily at the Golgi, dissociates into cytosol upon arrival of the Rab GTPaseYpt32p, which also functions in the late Golgi; Golgi-localized form is bound to GTP, while cytosolic form is GDP-bound; homolog of the mammalian Rab6; GO_component: GO:0005794 - Golgi apparatus [Evidence IDA] [PMID 24194547]; GO_component: GO:0005801 - cis-Golgi network [Evidence IDA] [PMID 24924636]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 24924636]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_function: GO:0005525 - GTP binding [Evidence IEA,IEA]; GO_function: GO:0003924 - GTPase activity [Evidence IDA] [PMID 11210571]; GO_function: GO:0003924 - GTPase activity [Evidence ISS] [PMID 9433126]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006886 - intracellular protein transport [Evidence IGI] [PMID 10990452]; GO_process: GO:0015031 - protein transport [Evidence IEA,IEA]; GO_process: GO:0042147 - retrograde transport, endosome to Golgi [Evidence IMP] [PMID 11160819]; GO_process: GO:0007264 - small GTPase mediated signal transduction [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Rab family GTPase YPT6 2604992 YPT6 30036689 YPT6 Sugiyamaella lignohabitans Rab family GTPase YPT6 XP_018734201.1 2604471 R 796027 CDS AWJ20_4546 30036690 2608339..2609799 C 1 NC_031671.1 uncharacterized protein 2609799 30036690 AWJ20_4546 Sugiyamaella lignohabitans uncharacterized protein XP_018734202.1 2608339 D 796027 CDS AWJ20_4547 30036691 join(2611314..2611508,2611630..2614149) C 1 NC_031671.1 Phosphatase subunit of the trehalose-6-P synthase/phosphatase complex; involved in synthesis of the storage carbohydrate trehalose; expression is induced by stress conditions and repressed by the Ras-cAMP pathway; protein abundance increases in response to DNA replication stress; GO_component: GO:0005946 - alpha,alpha-trehalose-phosphate synthase complex (UDP-forming) [Evidence IGI,IMP,IPI] [PMID 9837904]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0004805 - trehalose-phosphatase activity [Evidence IEA]; GO_function: GO:0004805 - trehalose-phosphatase activity [Evidence IMP] [PMID 8444170]; GO_process: GO:0034605 - cellular response to heat [Evidence IMP] [PMID 8203161]; GO_process: GO:0034605 - cellular response to heat [Evidence IDA] [PMID 8444170]; GO_process: GO:0016311 - dephosphorylation [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0006950 - response to stress [Evidence IEA]; GO_process: GO:0005992 - trehalose biosynthetic process [Evidence IEA]; GO_process: GO:0005992 - trehalose biosynthetic process [Evidence IMP] [PMID 8203161]; GO_process: GO:0005992 - trehalose biosynthetic process [Evidence IMP] [PMID 8444170]; trehalose-phosphatase TPS2 2614149 TPS2 30036691 TPS2 Sugiyamaella lignohabitans trehalose-phosphatase TPS2 XP_018734203.1 2611314 D 796027 CDS AWJ20_4548 30036692 complement(2614347..2616632) C 1 NC_031671.1 Positive regulator of genes in multiple nitrogen degradation pathways; contains DNA binding domain but does not appear to bind the dodecanucleotide sequence present in the promoter region of many genes involved in allantoin catabolism; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IC] [PMID 20581295]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0001128 - RNA polymerase II transcription coactivator activity involved in preinitiation complex assembly [Evidence IDA,IMP] [PMID 21515579]; GO_function: GO:0001190 - RNA polymerase II transcription factor binding transcription factor activity involved in positive regulation of transcription [Evidence IPI] [PMID 10906145]; GO_function: GO:0001190 - RNA polymerase II transcription factor binding transcription factor activity involved in positive regulation of transcription [Evidence IMP] [PMID 17603098]; GO_function: GO:0001135 - RNA polymerase II transcription factor recruiting transcription factor activity [Evidence IDA,IMP] [PMID 21515579]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0000981 - sequence-specific DNA binding RNA polymerase II transcription factor activity [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0001080 - nitrogen catabolite activation of transcription from RNA polymerase II promoter [Evidence IPI] [PMID 10906145]; GO_process: GO:0001080 - nitrogen catabolite activation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 7899074]; GO_process: GO:1901717 - positive regulation of gamma-aminobutyric acid catabolic process [Evidence IMP] [PMID 2406136]; GO_process: GO:1901714 - positive regulation of urea catabolic process [Evidence IMP] [PMID 2406136]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA,IEA]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA,IEA]; Dal81p 2616632 DAL81 30036692 DAL81 Sugiyamaella lignohabitans Dal81p XP_018734204.1 2614347 R 796027 CDS AWJ20_4549 30036693 2617496..2618332 C 1 NC_031671.1 Subunit of heteropentameric Replication factor C (RF-C); which is a DNA binding protein and ATPase that acts as a clamp loader of the proliferating cell nuclear antigen (PCNA) processivity factor for DNA polymerases delta and epsilon; relocalizes to the cytosol in response to hypoxia; GO_component: GO:0031390 - Ctf18 RFC-like complex [Evidence IPI] [PMID 11389843]; GO_component: GO:0005663 - DNA replication factor C complex [Evidence IDA,ISS] [PMID 8063832]; GO_component: GO:0031391 - Elg1 RFC-like complex [Evidence IPI] [PMID 12909721]; GO_component: GO:0031391 - Elg1 RFC-like complex [Evidence IPI] [PMID 12912927]; GO_component: GO:0031389 - Rad17 RFC-like complex [Evidence IDA] [PMID 12604797]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 22932476]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22932476]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0003689 - DNA clamp loader activity [Evidence IDA] [PMID 12604797]; GO_function: GO:0003689 - DNA clamp loader activity [Evidence IDA] [PMID 8995429]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_process: GO:0006260 - DNA replication [Evidence IEA,IEA]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0006272 - leading strand elongation [Evidence IDA] [PMID 1346062]; GO_process: GO:0006298 - mismatch repair [Evidence TAS] [PMID 10072354]; GO_process: GO:0007062 - sister chromatid cohesion [Evidence IPI] [PMID 11389843]; replication factor C subunit 4 2618332 RFC4 30036693 RFC4 Sugiyamaella lignohabitans replication factor C subunit 4 XP_018734205.1 2617496 D 796027 CDS AWJ20_4551 30036696 2622458..2623657 C 1 NC_031671.1 Ceramide synthase component; involved in synthesis of ceramide from C26(acyl)-coenzyme A and dihydrosphingosine or phytosphingosine, functionally equivalent to Lac1p; forms ER foci upon DNA replication stress; homolog of human CERS2, a tumor metastasis suppressor gene whose silencing enahnces invasion/metastasis of prostate cancer cells; LAG1 has a paralog, LAC1, that arose from the whole genome duplication; GO_component: GO:0061576 - acyl-CoA ceramide synthase complex [Evidence IDA] [PMID 15692566]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 11914276]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 14562095]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 22842922]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0050291 - sphingosine N-acyltransferase activity [Evidence IEA]; GO_function: GO:0050291 - sphingosine N-acyltransferase activity [Evidence IMP] [PMID 11387200]; GO_function: GO:0050291 - sphingosine N-acyltransferase activity [Evidence IMP] [PMID 11694577]; GO_function: GO:0050291 - sphingosine N-acyltransferase activity [Evidence IDA] [PMID 15692566]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0046513 - ceramide biosynthetic process [Evidence IMP] [PMID 11694577]; GO_process: GO:0046513 - ceramide biosynthetic process [Evidence IDA] [PMID 15692566]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0001302 - replicative cell aging [Evidence IEP,IMP] [PMID 8195187]; sphingosine N-acyltransferase LAG1 2623657 LAG1 30036696 LAG1 Sugiyamaella lignohabitans sphingosine N-acyltransferase LAG1 XP_018734206.1 2622458 D 796027 CDS AWJ20_4552 30036697 complement(2623923..2624918) C 1 NC_031671.1 osmosensor SHO1 2624918 SHO1 30036697 SHO1 Sugiyamaella lignohabitans osmosensor SHO1 XP_018734207.1 2623923 R 796027 CDS AWJ20_4553 30036698 complement(2627204..2628136) C 1 NC_031671.1 Vacuolar aspartate and glutamate exporter; member of a family of seven genes (AVT1-7) related to vesicular GABA-glycine transporters; involved in compartmentalizing acidic amino acids in response to nitrogen starvation; AVT6 has a paralog, AVT5, that arose from the whole genome duplication; GO_component: GO:0000324 - fungal-type vacuole [Evidence IDA] [PMID 11274162]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 20118605]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0015183 - L-aspartate transmembrane transporter activity [Evidence IMP] [PMID 11274162]; GO_function: GO:0005313 - L-glutamate transmembrane transporter activity [Evidence IMP] [PMID 11274162]; GO_function: GO:0005215 - transporter activity [Evidence ISS] [PMID 11274162]; GO_process: GO:0032974 - amino acid transmembrane export from vacuole [Evidence IMP] [PMID 11274162]; GO_process: GO:0006865 - amino acid transport [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IMP] [PMID 11274162]; GO_process: GO:0006810 - transport [Evidence IEA]; Avt6p 2628136 AVT6 30036698 AVT6 Sugiyamaella lignohabitans Avt6p XP_018734208.1 2627204 R 796027 CDS AWJ20_4554 30036699 2628951..2630252 C 1 NC_031671.1 Nucleolar protein; involved in biogenesis of the 60S subunit of the ribosome; interacts with rRNA processing factors Cbf5p and Nop2p and with the nucleolar proteins Nop17p and Nip7p; null mutant is viable but growth is severely impaired; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 10684247]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 16043506]; GO_component: GO:0005654 - nucleoplasm [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 10684247]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11914276]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 16043506]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0019843 - rRNA binding [Evidence IDA] [PMID 16128814]; GO_process: GO:0000463 - maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 15686447]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0006364 - rRNA processing [Evidence IMP] [PMID 16128814]; GO_process: GO:0000055 - ribosomal large subunit export from nucleus [Evidence IMP] [PMID 16043506]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; Nop53p 2630252 NOP53 30036699 NOP53 Sugiyamaella lignohabitans Nop53p XP_018734209.1 2628951 D 796027 CDS AWJ20_4555 30036700 complement(2630381..2631619) C 1 NC_031671.1 uncharacterized protein 2631619 30036700 AWJ20_4555 Sugiyamaella lignohabitans uncharacterized protein XP_018734210.1 2630381 R 796027 CDS AWJ20_4556 30036701 2632814..2635729 C 1 NC_031671.1 Splicing factor that reanneals snRNPs during spliceosome recycling; reanneals U4 and U6 snRNPs; GO_component: GO:0005688 - U6 snRNP [Evidence IDA] [PMID 11720284]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0017070 - U6 snRNA binding [Evidence IDA] [PMID 20181740]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0017069 - snRNA binding [Evidence IPI] [PMID 16410014]; GO_process: GO:0008380 - RNA splicing [Evidence IEA]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0000245 - spliceosomal complex assembly [Evidence IMP] [PMID 10022888]; GO_process: GO:0000244 - spliceosomal tri-snRNP complex assembly [Evidence IDA] [PMID 9452384]; Prp24p 2635729 PRP24 30036701 PRP24 Sugiyamaella lignohabitans Prp24p XP_018734211.1 2632814 D 796027 CDS AWJ20_4557 30036702 complement(2635789..2640549) C 1 NC_031671.1 Scaffold protein; assists in association of the proteasome core particle with the regulatory particle; inhibits proteasomal ATPase activity; degraded by the mature proteasome after assembly; contains HEAT-like repeats; protein increases in abundance and relocalizes from nucleus to cytoplasm upon DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 20620957]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_component: GO:0000502 - proteasome complex [Evidence IEA]; GO_component: GO:0000502 - proteasome complex [Evidence IDA] [PMID 12408819]; GO_function: GO:0032947 - protein complex scaffold [Evidence IDA] [PMID 20620957]; GO_process: GO:0043248 - proteasome assembly [Evidence IDA] [PMID 20620957]; Ecm29p 2640549 ECM29 30036702 ECM29 Sugiyamaella lignohabitans Ecm29p XP_018734212.1 2635789 R 796027 CDS AWJ20_4558 30036703 2646532..2648226 C 1 NC_031671.1 Cytoplasmic protein required for replication of Brome mosaic virus; S. cerevisiae is a model system for studying replication of positive-strand RNA viruses in their natural hosts; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0005097 - Rab GTPase activator activity [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0032851 - positive regulation of Rab GTPase activity [Evidence IEA]; GO_process: GO:0032313 - regulation of Rab GTPase activity [Evidence IEA]; Oca5p 2648226 OCA5 30036703 OCA5 Sugiyamaella lignohabitans Oca5p XP_018734213.1 2646532 D 796027 CDS AWJ20_4559 30036704 complement(2648741..2650222) C 1 NC_031671.1 Subunit of the alpha-1,6 mannosyltransferase complex; type II membrane protein; has a role in retention of glycosyltransferases in the Golgi; involved in osmotic sensitivity and resistance to aminonitrophenyl propanediol; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0000137 - Golgi cis cisterna [Evidence IDA] [PMID 9430634]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA]; GO_component: GO:0000136 - alpha-1,6-mannosyltransferase complex [Evidence IPI] [PMID 9430634]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0000009 - alpha-1,6-mannosyltransferase activity [Evidence IDA] [PMID 10037752]; GO_function: GO:0000030 - mannosyltransferase activity [Evidence ISS] [PMID 9434768]; GO_process: GO:0006487 - protein N-linked glycosylation [Evidence IDA,IMP] [PMID 9430634]; Anp1p 2650222 ANP1 30036704 ANP1 Sugiyamaella lignohabitans Anp1p XP_018734214.1 2648741 R 796027 CDS AWJ20_4560 30036706 2652438..2653994 C 1 NC_031671.1 Splicing factor associated with the spliceosome; contains a U-box, a motif found in a class of ubiquitin ligases, and a WD40 domain; relocalizes to the cytosol in response to hypoxia; GO_component: GO:0000974 - Prp19 complex [Evidence IDA] [PMID 8194532]; GO_component: GO:0071006 - U2-type catalytic step 1 spliceosome [Evidence IDA] [PMID 8248176]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 22932476]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11914276]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22932476]; GO_component: GO:0005681 - spliceosomal complex [Evidence IEA]; GO_component: GO:0000151 - ubiquitin ligase complex [Evidence IEA]; GO_function: GO:0000384 - first spliceosomal transesterification activity [Evidence IC] [PMID 8248176]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence IEA]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence IDA,IMP] [PMID 12627222]; GO_process: GO:0006281 - DNA repair [Evidence IEA]; GO_process: GO:0008380 - RNA splicing [Evidence IEA]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0000349 - generation of catalytic spliceosome for first transesterification step [Evidence IMP] [PMID 12970570]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0016567 - protein ubiquitination [Evidence IEA]; E3 ubiquitin-protein ligase PRP19 2653994 PRP19 30036706 PRP19 Sugiyamaella lignohabitans E3 ubiquitin-protein ligase PRP19 XP_018734215.1 2652438 D 796027 CDS AWJ20_4561 30036707 complement(2654246..2657515) C 1 NC_031671.1 uncharacterized protein 2657515 30036707 AWJ20_4561 Sugiyamaella lignohabitans uncharacterized protein XP_018734216.1 2654246 R 796027 CDS AWJ20_4562 30036708 complement(2662790..2664160) C 1 NC_031671.1 uncharacterized protein 2664160 30036708 AWJ20_4562 Sugiyamaella lignohabitans uncharacterized protein XP_018734217.1 2662790 R 796027 CDS AWJ20_4563 30036709 2664782..2666131 C 1 NC_031671.1 uncharacterized protein 2666131 30036709 AWJ20_4563 Sugiyamaella lignohabitans uncharacterized protein XP_018734218.1 2664782 D 796027 CDS AWJ20_4564 30036710 2666532..2667500 C 1 NC_031671.1 Mitochondrial ribosomal protein of the large subunit; GO_component: GO:0015934 - large ribosomal subunit [Evidence IEA]; GO_component: GO:0005762 - mitochondrial large ribosomal subunit [Evidence IPI] [PMID 12392552]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA,IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IPI] [PMID 12392552]; GO_process: GO:0032543 - mitochondrial translation [Evidence IC] [PMID 12392552]; GO_process: GO:0006412 - translation [Evidence IEA]; mitochondrial 54S ribosomal protein YmL22 2667500 MRPL22 30036710 MRPL22 Sugiyamaella lignohabitans mitochondrial 54S ribosomal protein YmL22 XP_018734219.1 2666532 D 796027 CDS AWJ20_4565 30036711 2670416..2672110 C 1 NC_031671.1 Phosphatidylinositol 3-phosphate (PI3P) phosphatase; involved in various protein sorting pathways, including CVT targeting and endosome to vacuole transport; has similarity to the conserved myotubularin dual specificity phosphatase family; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 21124907]; GO_function: GO:0016791 - phosphatase activity [Evidence IEA]; GO_function: GO:0004438 - phosphatidylinositol-3-phosphatase activity [Evidence IEA]; GO_function: GO:0004438 - phosphatidylinositol-3-phosphatase activity [Evidence IMP] [PMID 10900271]; GO_function: GO:0004438 - phosphatidylinositol-3-phosphatase activity [Evidence IMP] [PMID 15169871]; GO_function: GO:0004725 - protein tyrosine phosphatase activity [Evidence IEA]; GO_process: GO:0016311 - dephosphorylation [Evidence IEA]; GO_process: GO:0035335 - peptidyl-tyrosine dephosphorylation [Evidence IEA]; GO_process: GO:0046856 - phosphatidylinositol dephosphorylation [Evidence IMP] [PMID 10900271]; GO_process: GO:0046856 - phosphatidylinositol dephosphorylation [Evidence IGI,IMP] [PMID 15169871]; phosphatidylinositol-3-phosphatase YMR1 2672110 YMR1 30036711 YMR1 Sugiyamaella lignohabitans phosphatidylinositol-3-phosphatase YMR1 XP_018734220.1 2670416 D 796027 CDS AWJ20_4566 30036712 complement(2672443..2673036) C 1 NC_031671.1 Endoplasmic reticulum packaging chaperone; required for incorporation of amino acid permeases into COPII coated vesicles for transport to the cell surface; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0030176 - integral component of endoplasmic reticulum membrane [Evidence IDA,ISS] [PMID 1423607]; GO_component: GO:0030176 - integral component of endoplasmic reticulum membrane [Evidence IDA] [PMID 15623581]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 19053807]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0051082 - unfolded protein binding [Evidence IMP,IPI] [PMID 10564255]; GO_function: GO:0051082 - unfolded protein binding [Evidence IMP] [PMID 15623581]; GO_process: GO:0006888 - ER to Golgi vesicle-mediated transport [Evidence IGI,IPI] [PMID 10564255]; GO_process: GO:0006457 - protein folding [Evidence IMP] [PMID 15623581]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Shr3p 2673036 SHR3 30036712 SHR3 Sugiyamaella lignohabitans Shr3p XP_018734221.1 2672443 R 796027 CDS AWJ20_4567 30036713 complement(2679164..2679835) C 1 NC_031671.1 uncharacterized protein 2679835 30036713 AWJ20_4567 Sugiyamaella lignohabitans uncharacterized protein XP_018734222.1 2679164 R 796027 CDS AWJ20_4568 30036714 complement(2680153..2680914) C 1 NC_031671.1 Protein component of the small (40S) ribosomal subunit; has apurinic/apyrimidinic (AP) endonuclease activity; essential for viability; homologous to mammalian ribosomal protein S3 and bacterial S3; GO_component: GO:0030686 - 90S preribosome [Evidence IDA] [PMID 12150911]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0022627 - cytosolic small ribosomal subunit [Evidence IDA] [PMID 18782943]; GO_component: GO:0022627 - cytosolic small ribosomal subunit [Evidence IDA] [PMID 3533916]; GO_component: GO:0022627 - cytosolic small ribosomal subunit [Evidence IDA] [PMID 385049]; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0030688 - preribosome, small subunit precursor [Evidence IDA] [PMID 16738661]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA,IEA]; GO_component: GO:0015935 - small ribosomal subunit [Evidence IEA]; GO_function: GO:0003906 - DNA-(apurinic or apyrimidinic site) lyase activity [Evidence IDA] [PMID 11561734]; GO_function: GO:0003723 - RNA binding [Evidence IEA,IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IDA] [PMID 18782943]; GO_process: GO:0002181 - cytoplasmic translation [Evidence IC] [PMID 18782943]; GO_process: GO:0002181 - cytoplasmic translation [Evidence IC] [PMID 3533916]; GO_process: GO:0002181 - cytoplasmic translation [Evidence IC] [PMID 385049]; GO_process: GO:0006407 - rRNA export from nucleus [Evidence IMP] [PMID 16246728]; GO_process: GO:0000056 - ribosomal small subunit export from nucleus [Evidence IGI] [PMID 22570489]; GO_process: GO:0006412 - translation [Evidence IEA]; ribosomal 40S subunit protein S3 2680914 RPS3 30036714 RPS3 Sugiyamaella lignohabitans ribosomal 40S subunit protein S3 XP_018734223.1 2680153 R 796027 CDS AWJ20_4569 30036715 2681834..2683393 C 1 NC_031671.1 Poly(A) binding protein; part of the 3'-end RNA-processing complex, mediates interactions between the 5' cap structure and the 3' mRNA poly(A) tail, involved in control of poly(A) tail length, interacts with translation factor eIF-4G; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 15630021]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 15769879]; GO_component: GO:0010494 - cytoplasmic stress granule [Evidence IDA] [PMID 17908917]; GO_component: GO:0010494 - cytoplasmic stress granule [Evidence IDA] [PMID 18981231]; GO_component: GO:0010494 - cytoplasmic stress granule [Evidence IDA] [PMID 19470581]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11914276]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 15630021]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 15769879]; GO_component: GO:0005840 - ribosome [Evidence IDA] [PMID 8631901]; GO_function: GO:0003723 - RNA binding [Evidence IEA,IEA]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0008143 - poly(A) binding [Evidence IDA,IMP] [PMID 9193001]; GO_function: GO:0008428 - ribonuclease inhibitor activity [Evidence IDA] [PMID 11889048]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0051028 - mRNA transport [Evidence IEA]; GO_process: GO:0060211 - regulation of nuclear-transcribed mRNA poly(A) tail shortening [Evidence IDA,IMP] [PMID 17766253]; GO_process: GO:0006417 - regulation of translation [Evidence IEA]; GO_process: GO:0006446 - regulation of translational initiation [Evidence IDA,IMP] [PMID 10357826]; GO_process: GO:0006810 - transport [Evidence IEA]; polyadenylate-binding protein 2683393 PAB1 30036715 PAB1 Sugiyamaella lignohabitans polyadenylate-binding protein XP_018734224.1 2681834 D 796027 CDS AWJ20_4570 30036717 complement(2683946..2685550) C 1 NC_031671.1 Non-essential hypothetical protein; involved in signal transduction and the genotoxic response; induced rapidly in response to treatment with 8-methoxypsoralen and UVA irradiation; relocalizes from ER to cytoplasm upon DNA replication stress; ECM3 has a paralog, YNL095C, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 14562095]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 22842922]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0016887 - ATPase activity [Evidence ISS] [PMID 9200815]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; putative ATPase ECM3 2685550 ECM3 30036717 ECM3 Sugiyamaella lignohabitans putative ATPase ECM3 XP_018734225.1 2683946 R 796027 CDS AWJ20_4571 30036718 2687167..2689527 C 1 NC_031671.1 Phosphatidate phosphatase, converts phosphatidate to diacylglycerol; App1p, Pah1p, Dpp1p, and Lpp1p are responsible for all the phosphatidate phosphatase activity; component of cortical actin patches; interacts with components of endocytic pathway; GO_component: GO:0030479 - actin cortical patch [Evidence IEA]; GO_component: GO:0030479 - actin cortical patch [Evidence IDA] [PMID 11489916]; GO_component: GO:0015629 - actin cytoskeleton [Evidence IPI] [PMID 10992286]; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0008195 - phosphatidate phosphatase activity [Evidence IEA]; GO_function: GO:0008195 - phosphatidate phosphatase activity [Evidence IDA,IMP] [PMID 23071111]; GO_function: GO:0008195 - phosphatidate phosphatase activity [Evidence IDA] [PMID 23335564]; GO_process: GO:0030036 - actin cytoskeleton organization [Evidence IPI] [PMID 10992286]; GO_process: GO:0044255 - cellular lipid metabolic process [Evidence IMP] [PMID 23071111]; GO_process: GO:0016311 - dephosphorylation [Evidence IEA]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; phosphatidate phosphatase APP1 2689527 APP1 30036718 APP1 Sugiyamaella lignohabitans phosphatidate phosphatase APP1 XP_018734226.1 2687167 D 796027 CDS AWJ20_4572 30036719 2692376..2693248 C 1 NC_031671.1 Major ADP/ATP carrier of the mitochondrial inner membrane; exchanges cytosolic ADP for mitochondrially synthesized ATP; also imports heme and ATP; phosphorylated; required for viability in many lab strains that carry a sal1 mutation; PET9 has a paralog, AAC3, that arose from the whole genome duplication; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA,IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IDA] [PMID 795470]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IPI] [PMID 16962558]; GO_function: GO:0005471 - ATP:ADP antiporter activity [Evidence IDA] [PMID 8476415]; GO_function: GO:0005215 - transporter activity [Evidence IEA]; GO_process: GO:0015866 - ADP transport [Evidence IDA] [PMID 8476415]; GO_process: GO:0015867 - ATP transport [Evidence IDA] [PMID 8476415]; GO_process: GO:0009060 - aerobic respiration [Evidence IMP] [PMID 2167309]; GO_process: GO:0009061 - anaerobic respiration [Evidence IGI] [PMID 1915842]; GO_process: GO:0006915 - apoptotic process [Evidence IMP] [PMID 17822411]; GO_process: GO:0015886 - heme transport [Evidence IMP,IPI] [PMID 18728780]; GO_process: GO:0006839 - mitochondrial transport [Evidence IMP] [PMID 2167309]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IDA] [PMID 8476415]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; ADP/ATP carrier protein PET9 2693248 PET9 30036719 PET9 Sugiyamaella lignohabitans ADP/ATP carrier protein PET9 XP_018734227.1 2692376 D 796027 CDS AWJ20_4573 30036720 2694684..2697731 C 1 NC_031671.1 uncharacterized protein 2697731 30036720 AWJ20_4573 Sugiyamaella lignohabitans uncharacterized protein XP_018734228.1 2694684 D 796027 CDS AWJ20_4574 30036721 2698405..2700816 C 1 NC_031671.1 Mitochondrial inner membrane m-AAA protease component; mediates degradation of misfolded or unassembled proteins; also required for correct assembly of mitochondrial enzyme complexes; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0005745 - m-AAA complex [Evidence IDA] [PMID 8681382]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0097002 - mitochondrial inner boundary membrane [Evidence IDA] [PMID 19019989]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IDA] [PMID 7929327]; GO_component: GO:0031966 - mitochondrial membrane [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 11914276]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0005524 - ATP binding [Evidence IDA] [PMID 19748354]; GO_function: GO:0016887 - ATPase activity [Evidence IDA,IMP] [PMID 19748354]; GO_function: GO:0016887 - ATPase activity [Evidence ISS] [PMID 7929327]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004222 - metalloendopeptidase activity [Evidence IEA]; GO_function: GO:0008237 - metallopeptidase activity [Evidence IEA]; GO_function: GO:0008237 - metallopeptidase activity [Evidence IMP] [PMID 8681382]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_function: GO:0005515 - protein binding [Evidence IPI] [PMID 19748354]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0006461 - protein complex assembly [Evidence IMP] [PMID 8681382]; GO_process: GO:0045041 - protein import into mitochondrial intermembrane space [Evidence TAS] [PMID 12417197]; GO_process: GO:0006508 - proteolysis [Evidence IEA,IEA]; GO_process: GO:0006508 - proteolysis [Evidence IMP] [PMID 8681382]; GO_process: GO:0006465 - signal peptide processing [Evidence IMP] [PMID 12417197]; m-AAA protease subunit YTA12 2700816 YTA12 30036721 YTA12 Sugiyamaella lignohabitans m-AAA protease subunit YTA12 XP_018734229.1 2698405 D 796027 CDS AWJ20_4575 30036722 complement(2699151..2699588) C 1 NC_031671.1 uncharacterized protein 2699588 30036722 AWJ20_4575 Sugiyamaella lignohabitans uncharacterized protein XP_018734230.1 2699151 R 796027 CDS AWJ20_4576 30036723 complement(2701494..2703056) C 1 NC_031671.1 similar to hypothetical protein; allele of CaO19.13270; putative zinc finger protein 2703056 NRG1 30036723 NRG1 Sugiyamaella lignohabitans putative zinc finger protein XP_018734231.1 2701494 R 796027 CDS AWJ20_4577 30036724 2707094..2708059 C 1 NC_031671.1 microtubule-binding protein BIM1 2708059 BIM1 30036724 BIM1 Sugiyamaella lignohabitans microtubule-binding protein BIM1 XP_018734232.1 2707094 D 796027 CDS AWJ20_4578 30036725 complement(2708601..2709344) C 1 NC_031671.1 Ribosomal 40S subunit protein S0A; required for maturation of 18S rRNA along with Rps0Bp; deletion of either RPS0 gene reduces growth rate, deletion of both genes is lethal; homologous to human ribosomal protein SA and bacterial S2; RPS0A has a paralog, RPS0B, that arose from the whole genome duplication; GO_component: GO:0030686 - 90S preribosome [Evidence IDA] [PMID 12150911]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0022627 - cytosolic small ribosomal subunit [Evidence IEA]; GO_component: GO:0022627 - cytosolic small ribosomal subunit [Evidence IDA] [PMID 8626693]; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA,IEA]; GO_component: GO:0015935 - small ribosomal subunit [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IEA,IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IDA] [PMID 8626693]; GO_process: GO:0002181 - cytoplasmic translation [Evidence IMP] [PMID 8626693]; GO_process: GO:0002181 - cytoplasmic translation [Evidence IMP] [PMID 9973221]; GO_process: GO:0000447 - endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 14627813]; GO_process: GO:0000461 - endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 14627813]; GO_process: GO:0006407 - rRNA export from nucleus [Evidence IGI] [PMID 16246728]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0000028 - ribosomal small subunit assembly [Evidence IEA]; GO_process: GO:0000028 - ribosomal small subunit assembly [Evidence IMP] [PMID 8626693]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; GO_process: GO:0006412 - translation [Evidence IEA,IEA]; ribosomal 40S subunit protein S0A 2709344 RPS0A 30036725 RPS0A Sugiyamaella lignohabitans ribosomal 40S subunit protein S0A XP_018734233.1 2708601 R 796027 CDS AWJ20_4579 30036726 complement(2714649..2715227) C 1 NC_031671.1 Protein component of the small (40S) ribosomal subunit; interacts with Kti11p; deletion causes hypersensitivity to zymocin; homologous to mammalian ribosomal protein S7, no bacterial homolog; RPS7A has a paralog, RPS7B, that arose from the whole genome duplication; GO_component: GO:0030686 - 90S preribosome [Evidence IDA] [PMID 12150911]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0022627 - cytosolic small ribosomal subunit [Evidence IBA]; GO_component: GO:0022627 - cytosolic small ribosomal subunit [Evidence NAS] [PMID 9559554]; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA,IEA]; GO_component: GO:0032040 - small-subunit processome [Evidence IDA] [PMID 15590835]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence NAS] [PMID 9559554]; GO_process: GO:0002181 - cytoplasmic translation [Evidence NAS] [PMID 9559554]; GO_process: GO:0006364 - rRNA processing [Evidence IBA,IEA]; GO_process: GO:0042274 - ribosomal small subunit biogenesis [Evidence IBA]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IGI] [PMID 16246728]; GO_process: GO:0006412 - translation [Evidence IEA]; ribosomal 40S subunit protein S7A 2715227 RPS7A 30036726 RPS7A Sugiyamaella lignohabitans ribosomal 40S subunit protein S7A XP_018734234.1 2714649 R 796027 CDS AWJ20_4580 30036728 complement(2715738..2717111) C 1 NC_031671.1 Beta-1,3-glucanosyltransferase; required for cell wall assembly and also has a role in transcriptional silencing; localizes to cell surface via a glycosylphosphatidylinositol (GPI) anchor; also found at nuclear periphery; genetic interactions with histone H3 lysine acetyltransferases GCN5 and SAS3 indicate previously unsuspected functions for Gas1 in DNA damage response and cell cycle regulation; GO_component: GO:0030134 - ER to Golgi transport vesicle [Evidence IDA] [PMID 18462190]; GO_component: GO:0031225 - anchored component of membrane [Evidence IEA]; GO_component: GO:0005618 - cell wall [Evidence IEA,IEA]; GO_component: GO:0005621 - cellular bud scar [Evidence IDA] [PMID 19793924]; GO_component: GO:0005576 - extracellular region [Evidence IEA]; GO_component: GO:0009277 - fungal-type cell wall [Evidence IDA] [PMID 15781460]; GO_component: GO:0009277 - fungal-type cell wall [Evidence IDA] [PMID 19793924]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0045121 - membrane raft [Evidence IDA] [PMID 10716729]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0034399 - nuclear periphery [Evidence IDA] [PMID 19541632]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 16622836]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 1824714]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 19793924]; GO_component: GO:0000936 - primary cell septum [Evidence IDA] [PMID 19793924]; GO_function: GO:0042124 - 1,3-beta-glucanosyltransferase activity [Evidence IDA] [PMID 10809732]; GO_function: GO:0042124 - 1,3-beta-glucanosyltransferase activity [Evidence IDA] [PMID 15355340]; GO_function: GO:0042124 - 1,3-beta-glucanosyltransferase activity [Evidence IDA] [PMID 17397106]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0005975 - carbohydrate metabolic process [Evidence IEA]; GO_process: GO:0006342 - chromatin silencing [Evidence IMP,IPI] [PMID 19541632]; GO_process: GO:0030447 - filamentous growth [Evidence IMP] [PMID 15645503]; GO_process: GO:0031505 - fungal-type cell wall organization [Evidence IGI] [PMID 16986442]; GO_process: GO:0031505 - fungal-type cell wall organization [Evidence IMP] [PMID 9515908]; 1,3-beta-glucanosyltransferase GAS1 2717111 GAS1 30036728 GAS1 Sugiyamaella lignohabitans 1,3-beta-glucanosyltransferase GAS1 XP_018734235.1 2715738 R 796027 CDS AWJ20_4581 30036729 complement(join(2718433..2721009,2721084..2721131)) C 1 NC_031671.1 uncharacterized protein 2721131 30036729 AWJ20_4581 Sugiyamaella lignohabitans uncharacterized protein XP_018734236.1 2718433 R 796027 CDS AWJ20_4582 30036730 complement(2721530..2723809) C 1 NC_031671.1 uncharacterized protein 2723809 30036730 AWJ20_4582 Sugiyamaella lignohabitans uncharacterized protein XP_018734237.1 2721530 R 796027 CDS AWJ20_4583 30036731 complement(2724494..2726104) C 1 NC_031671.1 glycoside hydrolase family 35 protein 2726104 30036731 AWJ20_4583 Sugiyamaella lignohabitans glycoside hydrolase family 35 protein XP_018734238.1 2724494 R 796027 CDS AWJ20_4584 30036732 2726526..2728148 C 1 NC_031671.1 beta-galactosidase 2728148 30036732 AWJ20_4584 Sugiyamaella lignohabitans beta-galactosidase XP_018734239.1 2726526 D 796027 CDS AWJ20_4585 30036733 complement(2728533..2729387) C 1 NC_031671.1 hexose transporter HXT15 2729387 HXT15 30036733 HXT15 Sugiyamaella lignohabitans hexose transporter HXT15 XP_018734240.1 2728533 R 796027 CDS AWJ20_4586 30036734 complement(2729426..2729995) C 1 NC_031671.1 glucose-inactivated glycerol proton symporter STL1 2729995 STL1 30036734 STL1 Sugiyamaella lignohabitans glucose-inactivated glycerol proton symporter STL1 XP_018734241.1 2729426 R 796027 CDS AWJ20_4587 30036735 2731471..2732364 C 1 NC_031671.1 uncharacterized protein 2732364 30036735 AWJ20_4587 Sugiyamaella lignohabitans uncharacterized protein XP_018734242.1 2731471 D 796027 CDS AWJ20_4588 30036736 2736543..2739098 C 1 NC_031671.1 Oligopeptide transporter; member of the OPT family, with potential orthologs in S. pombe and C. albicans; also plays a role in formation of mature vacuoles; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0005887 - integral component of plasma membrane [Evidence IC] [PMID 9643541]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_function: GO:0015198 - oligopeptide transporter activity [Evidence IDA,ISS] [PMID 9643541]; GO_process: GO:0006857 - oligopeptide transport [Evidence IDA,ISS] [PMID 9643541]; GO_process: GO:0015833 - peptide transport [Evidence IEA]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0042144 - vacuole fusion, non-autophagic [Evidence IMP] [PMID 19767828]; Opt2p 2739098 OPT2 30036736 OPT2 Sugiyamaella lignohabitans Opt2p XP_018734243.1 2736543 D 796027 CDS AWJ20_4589 30036737 2739449..2742892 C 1 NC_031671.1 ATP binding cassette protein; cosediments with polysomes and is required for biogenesis of the small ribosomal subunit; Asn/Gln-rich rich region supports [NU+] prion formation and susceptibility to [PSI+] prion induction; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 23222640]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005844 - polysome [Evidence IDA] [PMID 19806183]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 23212245]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0005524 - ATP binding [Evidence ISS] [PMID 12110682]; GO_function: GO:0016887 - ATPase activity [Evidence IEA]; GO_function: GO:0016887 - ATPase activity [Evidence ISS] [PMID 12110682]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0051028 - mRNA transport [Evidence IEA]; GO_process: GO:0016973 - poly(A)+ mRNA export from nucleus [Evidence ISS] [PMID 12110682]; GO_process: GO:0042274 - ribosomal small subunit biogenesis [Evidence IMP] [PMID 19806183]; GO_process: GO:0006810 - transport [Evidence IEA]; New1p 2742892 NEW1 30036737 NEW1 Sugiyamaella lignohabitans New1p XP_018734244.1 2739449 D 796027 CDS AWJ20_4590 30036739 complement(2743022..2743840) C 1 NC_031671.1 uncharacterized protein 2743840 30036739 AWJ20_4590 Sugiyamaella lignohabitans uncharacterized protein XP_018734245.1 2743022 R 796027 CDS AWJ20_4591 30036740 2744634..2745035 C 1 NC_031671.1 uncharacterized protein 2745035 30036740 AWJ20_4591 Sugiyamaella lignohabitans uncharacterized protein XP_018734246.1 2744634 D 796027 CDS AWJ20_4592 30036741 complement(2745304..2746527) C 1 NC_031671.1 Putative metal transporter involved in mitochondrial iron accumulation; MMT2 has a paralog, MMT1, that arose from the whole genome duplication; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016021 - integral component of membrane [Evidence ISS] [PMID 9353309]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0031966 - mitochondrial membrane [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 9353309]; GO_function: GO:0008324 - cation transmembrane transporter activity [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006812 - cation transport [Evidence IEA]; GO_process: GO:0006879 - cellular iron ion homeostasis [Evidence IEA]; GO_process: GO:0006879 - cellular iron ion homeostasis [Evidence IGI,IMP] [PMID 9353309]; GO_process: GO:0006811 - ion transport [Evidence IEA]; GO_process: GO:0055072 - iron ion homeostasis [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Mmt2p 2746527 MMT2 30036741 MMT2 Sugiyamaella lignohabitans Mmt2p XP_018734247.1 2745304 R 796027 CDS AWJ20_4593 30036742 complement(2747206..2749467) C 1 NC_031671.1 uncharacterized protein 2749467 30036742 AWJ20_4593 Sugiyamaella lignohabitans uncharacterized protein XP_018734248.1 2747206 R 796027 CDS AWJ20_4594 30036743 complement(2749531..2752437) C 1 NC_031671.1 Subunit of the Snt2C complex; physically associates with Snt2p and Rpd3p; along with Snt2p, recruits Rpd3p to a small number of promoters; also colocalizes with Snt2p, independently of Rpd3p, to promoters of stress response genes in response to oxidative stress; contains ATP/GTP-binding site motif A; null mutant exhibits increased cellular volume, large drooping buds with elongated necks; relative distribution to the nucleus increases upon DNA replication stress; GO_component: GO:0070211 - Snt2C complex [Evidence IDA] [PMID 19040720]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0034599 - cellular response to oxidative stress [Evidence IMP] [PMID 23878396]; Ecm5p 2752437 ECM5 30036743 ECM5 Sugiyamaella lignohabitans Ecm5p XP_018734249.1 2749531 R 796027 CDS AWJ20_4595 30036744 complement(2753375..2754001) C 1 NC_031671.1 DNA damage-responsive protein; expression is increased in response to heat-shock stress or treatments that produce DNA lesions; contains multiple repeats of the amino acid sequence NNNDSYGS; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0016887 - ATPase activity [Evidence IDA] [PMID 8444852]; GO_function: GO:0003924 - GTPase activity [Evidence IDA] [PMID 8444852]; GO_process: GO:0006281 - DNA repair [Evidence IDA,IMP] [PMID 2111448]; GO_process: GO:0006950 - response to stress [Evidence IEA]; DNA damage-responsive protein 48 2754001 DDR48 30036744 DDR48 Sugiyamaella lignohabitans DNA damage-responsive protein 48 XP_018734250.1 2753375 R 796027 CDS AWJ20_4596 30036745 2757703..2759595 C 1 NC_031671.1 Phospholipase B (lysophospholipase) involved in lipid metabolism; displays transacylase activity in vitro; overproduction confers resistance to lysophosphatidylcholine; GO_component: GO:0031225 - anchored component of membrane [Evidence IEA]; GO_component: GO:0005618 - cell wall [Evidence IEA,IEA]; GO_component: GO:0005576 - extracellular region [Evidence IEA]; GO_component: GO:0005576 - extracellular region [Evidence IDA] [PMID 10497163]; GO_component: GO:0009277 - fungal-type cell wall [Evidence IDA] [PMID 10383953]; GO_component: GO:0009277 - fungal-type cell wall [Evidence IDA] [PMID 15781460]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0004622 - lysophospholipase activity [Evidence IEA]; GO_function: GO:0004622 - lysophospholipase activity [Evidence IDA,IMP,ISS] [PMID 10497163]; GO_function: GO:0004620 - phospholipase activity [Evidence IEA]; GO_process: GO:0006650 - glycerophospholipid metabolic process [Evidence IDA,IGI,IMP] [PMID 10497163]; GO_process: GO:0016042 - lipid catabolic process [Evidence IEA]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0009395 - phospholipid catabolic process [Evidence IEA]; Plb2p 2759595 PLB2 30036745 PLB2 Sugiyamaella lignohabitans Plb2p XP_018734251.1 2757703 D 796027 CDS AWJ20_4597 30036746 complement(2759870..2760211) C 1 NC_031671.1 Mitochondrial protein required for outer membrane protein import; cooperates with Tom70p to import the subset of proteins with multiple alpha-helical transmembrane segments, including Ugo1p, Tom20p, and others; present in a complex with Mim2p in the outer membrane that may create a local environment to facilitate membrane insertion of substrate proteins; also has a role in assembly of Tom20p into the TOM complex; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0031307 - integral component of mitochondrial outer membrane [Evidence IDA] [PMID 15608614]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IEA,IEA,IEA]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IDA] [PMID 15326197]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0070096 - mitochondrial outer membrane translocase complex assembly [Evidence IMP] [PMID 15608614]; GO_process: GO:0070096 - mitochondrial outer membrane translocase complex assembly [Evidence IMP] [PMID 17974559]; GO_process: GO:0045040 - protein import into mitochondrial outer membrane [Evidence IMP] [PMID 21825073]; GO_process: GO:0045040 - protein import into mitochondrial outer membrane [Evidence IMP] [PMID 21825074]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Mim1p 2760211 MIM1 30036746 MIM1 Sugiyamaella lignohabitans Mim1p XP_018734252.1 2759870 R 796027 CDS AWJ20_4598 30036747 2760635..2761792 C 1 NC_031671.1 Subunit of the Hat1p-Hat2p histone acetyltransferase complex; required for high affinity binding of the complex to free histone H4, thereby enhancing Hat1p activity; similar to human RbAp46 and 48; has a role in telomeric silencing; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 8858151]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 9575221]; GO_component: GO:0000123 - histone acetyltransferase complex [Evidence IPI] [PMID 14761951]; GO_component: GO:0000123 - histone acetyltransferase complex [Evidence IDA,IPI] [PMID 8858151]; GO_component: GO:0000123 - histone acetyltransferase complex [Evidence IDA] [PMID 9575221]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14761951]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9575221]; GO_function: GO:0004402 - histone acetyltransferase activity [Evidence IDA,IMP] [PMID 8858151]; GO_function: GO:0004402 - histone acetyltransferase activity [Evidence IMP] [PMID 9575221]; GO_function: GO:0042393 - histone binding [Evidence IDA] [PMID 8858151]; GO_process: GO:0006281 - DNA repair [Evidence IEA]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0006333 - chromatin assembly or disassembly [Evidence IDA] [PMID 8858151]; GO_process: GO:0016568 - chromatin modification [Evidence IEA]; GO_process: GO:0006348 - chromatin silencing at telomere [Evidence IGI] [PMID 10982821]; GO_process: GO:0016573 - histone acetylation [Evidence IDA,IMP] [PMID 8858151]; GO_process: GO:0016573 - histone acetylation [Evidence IMP] [PMID 9575221]; Hat2p 2761792 HAT2 30036747 HAT2 Sugiyamaella lignohabitans Hat2p XP_018734253.1 2760635 D 796027 CDS AWJ20_4599 30036748 complement(2762025..2763458) C 1 NC_031671.1 Long-chain base-1-phosphate phosphatase; specific for dihydrosphingosine-1-phosphate, regulates ceramide and long-chain base phosphates levels, involved in incorporation of exogenous long chain bases in sphingolipids; LCB3 has a paralog, YSR3, that arose from the whole genome duplication; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 10477278]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0042392 - sphingosine-1-phosphate phosphatase activity [Evidence TAS] [PMID 11278643]; GO_function: GO:0042392 - sphingosine-1-phosphate phosphatase activity [Evidence IDA] [PMID 9353337]; GO_process: GO:0019722 - calcium-mediated signaling [Evidence IMP] [PMID 11278643]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0030148 - sphingolipid biosynthetic process [Evidence TAS] [PMID 10563329]; GO_process: GO:0006665 - sphingolipid metabolic process [Evidence IEA]; sphinganine kinase LCB3 2763458 LCB3 30036748 LCB3 Sugiyamaella lignohabitans sphinganine kinase LCB3 XP_018734254.1 2762025 R 796027 CDS AWJ20_4600 30036751 2764924..2765853 C 1 NC_031671.1 GTP-binding protein of the rho subfamily of Ras-like proteins; involved in establishment of cell polarity; regulates protein kinase C (Pkc1p) and the cell wall synthesizing enzyme 1,3-beta-glucan synthase (Fks1p and Gsc2p); GO_component: GO:0000148 - 1,3-beta-D-glucan synthase complex [Evidence IDA] [PMID 8602515]; GO_component: GO:0005794 - Golgi apparatus [Evidence IDA] [PMID 1918143]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 8195291]; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 8195291]; GO_component: GO:0005768 - endosome [Evidence IEA]; GO_component: GO:0010008 - endosome membrane [Evidence IEA]; GO_component: GO:0000131 - incipient cellular bud site [Evidence IDA] [PMID 8195291]; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 12660244]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IDA] [PMID 16407407]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005778 - peroxisomal membrane [Evidence IEA]; GO_component: GO:0005777 - peroxisome [Evidence IEA]; GO_component: GO:0005777 - peroxisome [Evidence IDA] [PMID 15596542]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 16622836]; GO_function: GO:0005525 - GTP binding [Evidence IEA,IEA]; GO_function: GO:0003924 - GTPase activity [Evidence IDA] [PMID 11591390]; GO_function: GO:0003924 - GTPase activity [Evidence IDA] [PMID 7962098]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0030036 - actin cytoskeleton organization [Evidence IMP] [PMID 15596542]; GO_process: GO:0031532 - actin cytoskeleton reorganization [Evidence IGI,IPI] [PMID 8947028]; GO_process: GO:0007117 - budding cell bud growth [Evidence IGI,IMP] [PMID 8195291]; GO_process: GO:0045807 - positive regulation of endocytosis [Evidence IMP] [PMID 14593073]; GO_process: GO:0090037 - positive regulation of protein kinase C signaling [Evidence IDA,IMP] [PMID 8621575]; GO_process: GO:0090037 - positive regulation of protein kinase C signaling [Evidence IGI,IPI] [PMID 8846785]; GO_process: GO:0008361 - regulation of cell size [Evidence IMP] [PMID 17302939]; GO_process: GO:0090334 - regulation of cell wall (1->3)-beta-D-glucan biosynthetic process [Evidence IMP] [PMID 8602514]; GO_process: GO:0090334 - regulation of cell wall (1->3)-beta-D-glucan biosynthetic process [Evidence IDA,IMP] [PMID 8602515]; GO_process: GO:0090334 - regulation of cell wall (1->3)-beta-D-glucan biosynthetic process [Evidence IDA,IMP] [PMID 8662910]; GO_process: GO:0060178 - regulation of exocyst localization [Evidence IMP] [PMID 11283608]; GO_process: GO:0060237 - regulation of fungal-type cell wall organization [Evidence IMP] [PMID 8621575]; GO_process: GO:0032880 - regulation of protein localization [Evidence IMP] [PMID 10893184]; GO_process: GO:0032889 - regulation of vacuole fusion, non-autophagic [Evidence IMP] [PMID 11598008]; GO_process: GO:0007264 - small GTPase mediated signal transduction [Evidence IEA]; GO_process: GO:0007264 - small GTPase mediated signal transduction [Evidence IDA] [PMID 8621575]; GO_process: GO:0007264 - small GTPase mediated signal transduction [Evidence IGI] [PMID 8846785]; Rho family GTPase RHO1 2765853 RHO1 30036751 RHO1 Sugiyamaella lignohabitans Rho family GTPase RHO1 XP_018734255.1 2764924 D 796027 CDS AWJ20_4601 30036752 2766832..2767485 C 1 NC_031671.1 uncharacterized protein 2767485 30036752 AWJ20_4601 Sugiyamaella lignohabitans uncharacterized protein XP_018734256.1 2766832 D 796027 CDS AWJ20_4602 30036753 2768436..2770007 C 1 NC_031671.1 Hexadecenal dehydrogenase; involved in the conversion of sphingosine 1-phosphate breakdown product hexadecenal to hexadecenoic acid; located in the mitochondrial outer membrane and also in lipid particles; has similarity to ALDH3A2, a human fatty aldehyde dehydrogenase (FALDH) mutated in Sjogren-Larsson syndrome, a neurocutaneous disorder; GO_component: GO:0005768 - endosome [Evidence IEA]; GO_component: GO:0005768 - endosome [Evidence IDA] [PMID 14562095]; GO_component: GO:0010008 - endosome membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0031307 - integral component of mitochondrial outer membrane [Evidence IDA] [PMID 16689936]; GO_component: GO:0005811 - lipid particle [Evidence IDA] [PMID 14562095]; GO_component: GO:0005811 - lipid particle [Evidence IDA] [PMID 24868093]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IEA,IEA]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IDA] [PMID 16407407]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0004028 - 3-chloroallyl aldehyde dehydrogenase activity [Evidence ISS] [PMID 16407407]; GO_function: GO:0004029 - aldehyde dehydrogenase (NAD) activity [Evidence IEA]; GO_function: GO:0004030 - aldehyde dehydrogenase [NAD(P)+] activity [Evidence IEA]; GO_function: GO:0047770 - carboxylate reductase activity [Evidence IMP] [PMID 22633490]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0016620 - oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor [Evidence IEA]; GO_process: GO:0006081 - cellular aldehyde metabolic process [Evidence IEA]; GO_process: GO:0006081 - cellular aldehyde metabolic process [Evidence IC] [PMID 16407407]; GO_process: GO:0006081 - cellular aldehyde metabolic process [Evidence IMP] [PMID 22633490]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; Hfd1p 2770007 HFD1 30036753 HFD1 Sugiyamaella lignohabitans Hfd1p XP_018734257.1 2768436 D 796027 CDS AWJ20_4603 30036754 2770180..2771883 C 1 NC_031671.1 Splicing factor; component of the U4/U6-U5 snRNP complex; GO_component: GO:0046540 - U4/U6 x U5 tri-snRNP complex [Evidence IEA]; GO_component: GO:0046540 - U4/U6 x U5 tri-snRNP complex [Evidence IDA] [PMID 10377396]; GO_component: GO:0046540 - U4/U6 x U5 tri-snRNP complex [Evidence IDA] [PMID 10449419]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005681 - spliceosomal complex [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008380 - RNA splicing [Evidence IEA]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0000398 - mRNA splicing, via spliceosome [Evidence IEA]; GO_process: GO:0000398 - mRNA splicing, via spliceosome [Evidence IPI] [PMID 10377396]; GO_process: GO:0000387 - spliceosomal snRNP assembly [Evidence IDA,IMP] [PMID 9199293]; GO_process: GO:0000244 - spliceosomal tri-snRNP complex assembly [Evidence IEA]; Prp31p 2771883 PRP31 30036754 PRP31 Sugiyamaella lignohabitans Prp31p XP_018734258.1 2770180 D 796027 CDS AWJ20_4605 30036756 complement(9063..9809) D 1 NC_031673.1 uncharacterized protein 9809 30036756 AWJ20_4605 Sugiyamaella lignohabitans uncharacterized protein XP_018736140.1 9063 R 796027 CDS AWJ20_4606 30036757 complement(10902..14051) D 1 NC_031673.1 allele of CaO19.8194; polyprotein of L1-like non-LTR retrotransposon Zorro 3 14051 POL92 30036757 POL92 Sugiyamaella lignohabitans polyprotein of L1-like non-LTR retrotransposon Zorro 3 XP_018736141.1 10902 R 796027 CDS AWJ20_4608 30036759 16659..18428 D 1 NC_031673.1 Cystathionine gamma-synthase, converts cysteine into cystathionine; STR2 has a paralog, YML082W, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0003962 - cystathionine gamma-synthase activity [Evidence IEA]; GO_function: GO:0003962 - cystathionine gamma-synthase activity [Evidence IMP] [PMID 10821189]; GO_function: GO:0030170 - pyridoxal phosphate binding [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0009086 - methionine biosynthetic process [Evidence IEA]; GO_process: GO:0006790 - sulfur compound metabolic process [Evidence IMP] [PMID 10821189]; GO_process: GO:0019346 - transsulfuration [Evidence IMP] [PMID 10821189]; Str2p 18428 STR2 30036759 STR2 Sugiyamaella lignohabitans Str2p XP_018736142.1 16659 D 796027 CDS AWJ20_4609 30036760 complement(20297..20980) D 1 NC_031673.1 uncharacterized protein 20980 30036760 AWJ20_4609 Sugiyamaella lignohabitans uncharacterized protein XP_018736143.1 20297 R 796027 CDS AWJ20_4610 30036762 22086..23129 D 1 NC_031673.1 Allantoicase; converts allantoate to urea and ureidoglycolate in the second step of allantoin degradation; expression sensitive to nitrogen catabolite repression and induced by allophanate, an intermediate in allantoin degradation; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0004037 - allantoicase activity [Evidence IEA,IEA]; GO_function: GO:0004037 - allantoicase activity [Evidence ISS] [PMID 1916277]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_process: GO:0000256 - allantoin catabolic process [Evidence IEA,IEA]; GO_process: GO:0000256 - allantoin catabolic process [Evidence IMP] [PMID 1916277]; GO_process: GO:0006144 - purine nucleobase metabolic process [Evidence IEA]; allantoicase 23129 DAL2 30036762 DAL2 Sugiyamaella lignohabitans allantoicase XP_018736144.1 22086 D 796027 CDS AWJ20_4611 30036763 complement(25250..27241) D 1 NC_031673.1 Alpha-1,2-mannosidase; involved in ER-associated protein degradation (ERAD); catalyzes the removal of one mannose residue from a glycosylated protein, converting the modification from Man9GlcNAc to Man8GlcNAc; catalyzes the last step in glycoprotein maturation in the ER and is critical for ER protein degradation; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 8864657]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_function: GO:0005509 - calcium ion binding [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016798 - hydrolase activity, acting on glycosyl bonds [Evidence IEA]; GO_function: GO:0004571 - mannosyl-oligosaccharide 1,2-alpha-mannosidase activity [Evidence IEA,IEA]; GO_function: GO:0004571 - mannosyl-oligosaccharide 1,2-alpha-mannosidase activity [Evidence IDA] [PMID 12090241]; GO_function: GO:0004571 - mannosyl-oligosaccharide 1,2-alpha-mannosidase activity [Evidence IMP] [PMID 1714453]; GO_function: GO:0004571 - mannosyl-oligosaccharide 1,2-alpha-mannosidase activity [Evidence IMP] [PMID 8439291]; GO_function: GO:0004571 - mannosyl-oligosaccharide 1,2-alpha-mannosidase activity [Evidence IDA] [PMID 8910350]; GO_process: GO:0030433 - ER-associated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 8905927]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0035977 - protein deglycosylation involved in glycoprotein catabolic process [Evidence IMP] [PMID 9732283]; GO_process: GO:0006486 - protein glycosylation [Evidence IEA]; mannosyl-oligosaccharide 1,2-alpha-mannosidase 27241 MNS1 30036763 MNS1 Sugiyamaella lignohabitans mannosyl-oligosaccharide 1,2-alpha-mannosidase XP_018736145.1 25250 R 796027 CDS AWJ20_4612 30036764 complement(28542..29183) D 1 NC_031673.1 peptidase family M20 protein 29183 30036764 AWJ20_4612 Sugiyamaella lignohabitans peptidase family M20 protein XP_018736146.1 28542 R 796027 CDS AWJ20_4613 30036765 30080..30913 D 1 NC_031673.1 uncharacterized protein 30913 30036765 AWJ20_4613 Sugiyamaella lignohabitans uncharacterized protein XP_018736147.1 30080 D 796027 CDS AWJ20_4614 30036766 32007..33749 D 1 NC_031673.1 DNA polymerase IV; undergoes pair-wise interactions with Dnl4p-Lif1p and Rad27p to mediate repair of DNA double-strand breaks by non-homologous end joining (NHEJ); homologous to mammalian DNA polymerase beta; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence TAS] [PMID 9745046]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA,IEA,IEA]; GO_function: GO:0003887 - DNA-directed DNA polymerase activity [Evidence TAS] [PMID 9745046]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016779 - nucleotidyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006281 - DNA repair [Evidence IEA,IEA]; GO_process: GO:0006261 - DNA-dependent DNA replication [Evidence IEA,IEA,IEA]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0006302 - double-strand break repair [Evidence IDA] [PMID 12235149]; GO_process: GO:0006303 - double-strand break repair via nonhomologous end joining [Evidence IDA,IMP] [PMID 10438542]; GO_process: GO:0006303 - double-strand break repair via nonhomologous end joining [Evidence IDA] [PMID 15342630]; Pol4p 33749 POL4 30036766 POL4 Sugiyamaella lignohabitans Pol4p XP_018736148.1 32007 D 796027 CDS AWJ20_4615 30036767 join(37366..37399,37772..38799) D 1 NC_031673.1 phosphatidylinositol-binding protein SCS2 38799 SCS2 30036767 SCS2 Sugiyamaella lignohabitans phosphatidylinositol-binding protein SCS2 XP_018736149.1 37366 D 796027 CDS AWJ20_4616 30036768 complement(39107..40453) D 1 NC_031673.1 Methionine aminopeptidase; catalyzes the cotranslational removal of N-terminal methionine from nascent polypeptides; function is partially redundant with that of Map1p; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0004177 - aminopeptidase activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA,IEA]; GO_function: GO:0070006 - metalloaminopeptidase activity [Evidence IEA]; GO_function: GO:0070006 - metalloaminopeptidase activity [Evidence IGI,ISA] [PMID 8618900]; GO_function: GO:0008235 - metalloexopeptidase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_process: GO:0070084 - protein initiator methionine removal [Evidence IEA]; GO_process: GO:0035551 - protein initiator methionine removal involved in protein maturation [Evidence IMP] [PMID 11811952]; GO_process: GO:0006508 - proteolysis [Evidence IEA,IEA]; Map2p 40453 MAP2 30036768 MAP2 Sugiyamaella lignohabitans Map2p XP_018736150.1 39107 R 796027 CDS AWJ20_4617 30036769 complement(41803..43146) D 1 NC_031673.1 Maltose permease; high-affinity maltose transporter (alpha-glucoside transporter); encoded in the MAL3 complex locus; member of the 12 transmembrane domain superfamily of sugar transporters; functional in genomic reference strain S288C; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA,IEA]; GO_function: GO:0005352 - alpha-glucoside:proton symporter activity [Evidence ISS] [PMID 18179544]; GO_function: GO:0022891 - substrate-specific transmembrane transporter activity [Evidence IEA]; GO_function: GO:0022857 - transmembrane transporter activity [Evidence IEA]; GO_function: GO:0005215 - transporter activity [Evidence IEA]; GO_process: GO:0000017 - alpha-glucoside transport [Evidence ISS] [PMID 18179544]; GO_process: GO:0008643 - carbohydrate transport [Evidence IEA]; GO_process: GO:0000023 - maltose metabolic process [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; Mal31p 43146 MAL31 30036769 MAL31 Sugiyamaella lignohabitans Mal31p XP_018736151.1 41803 R 796027 CDS AWJ20_4618 30036770 44455..45597 D 1 NC_031673.1 sphingolipid delta-4 desaturase 45597 DES1 30036770 DES1 Sugiyamaella lignohabitans sphingolipid delta-4 desaturase XP_018736152.1 44455 D 796027 CDS AWJ20_4619 30036771 48199..49290 D 1 NC_031673.1 cyclin Pch1 49290 30036771 AWJ20_4619 Sugiyamaella lignohabitans cyclin Pch1 XP_018736153.1 48199 D 796027 CDS AWJ20_4620 30036773 50474..53815 D 1 NC_031673.1 chromatin-binding protein RAD9 53815 RAD9 30036773 RAD9 Sugiyamaella lignohabitans chromatin-binding protein RAD9 XP_018736154.1 50474 D 796027 CDS AWJ20_4621 30036774 58577..62152 D 1 NC_031673.1 Transcription factor that regulates acetate production; green fluorescent protein (GFP)-fusion protein localizes to the nucleus; null mutant is sensitive to expression of the top1-T722A allele; not an essential gene; TDA9 has a paralog, RSF2, that arose from the whole genome duplication; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA,IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 16785442]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA,IDA] [PMID 19111667]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19158363]; GO_process: GO:0019413 - acetate biosynthetic process [Evidence IMP] [PMID 23240040]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Tda9p 62152 TDA9 30036774 TDA9 Sugiyamaella lignohabitans Tda9p XP_018736155.1 58577 D 796027 CDS AWJ20_4622 30036775 complement(62322..66023) D 1 NC_031673.1 uncharacterized protein 66023 30036775 AWJ20_4622 Sugiyamaella lignohabitans uncharacterized protein XP_018736156.1 62322 R 796027 CDS AWJ20_4623 30036776 complement(66204..66434) D 1 NC_031673.1 uncharacterized protein 66434 30036776 AWJ20_4623 Sugiyamaella lignohabitans uncharacterized protein XP_018736157.1 66204 R 796027 CDS AWJ20_4624 30036777 69670..71322 D 1 NC_031673.1 uncharacterized protein 71322 30036777 AWJ20_4624 Sugiyamaella lignohabitans uncharacterized protein XP_018736158.1 69670 D 796027 CDS AWJ20_4625 30036778 join(73083..73152,73371..74557) D 1 NC_031673.1 3-phosphoglycerate kinase; catalyzes transfer of high-energy phosphoryl groups from the acyl phosphate of 1,3-bisphosphoglycerate to ADP to produce ATP; key enzyme in glycolysis and gluconeogenesis; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16962558]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 16622836]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0004618 - phosphoglycerate kinase activity [Evidence IEA,IEA]; GO_function: GO:0004618 - phosphoglycerate kinase activity [Evidence IDA] [PMID 6254992]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006094 - gluconeogenesis [Evidence IMP] [PMID 400791]; GO_process: GO:0006096 - glycolytic process [Evidence IEA,IEA,IEA]; GO_process: GO:0006096 - glycolytic process [Evidence IMP] [PMID 400791]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; phosphoglycerate kinase 74557 PGK1 30036778 PGK1 Sugiyamaella lignohabitans phosphoglycerate kinase XP_018736159.1 73083 D 796027 CDS AWJ20_4626 30036779 76568..79138 D 1 NC_031673.1 GTPase-activating protein (GAP) for yeast Rab family members; involved in ER to Golgi trafficking; exhibits GAP activity toward Ypt1p that is stimulated by Gyl1p, also acts on Sec4p; interacts with Gyl1p, Rvs161p and Rvs167p; involved in recruiting Rvs167p to the bud tip during polarized growth; relocalizes from bud neck to cytoplasm upon DNA replication stress; GYP5 has a paralog, GYL1, that arose from the whole genome duplication; GO_component: GO:0005798 - Golgi-associated vesicle [Evidence IDA] [PMID 15331637]; GO_component: GO:0005933 - cellular bud [Evidence IEA]; GO_component: GO:0005935 - cellular bud neck [Evidence IEA]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 15331637]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 22842922]; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 15331637]; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 22842922]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 12189143]; GO_component: GO:0000131 - incipient cellular bud site [Evidence IDA] [PMID 15331637]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 15331637]; GO_function: GO:0005096 - GTPase activator activity [Evidence IEA]; GO_function: GO:0005097 - Rab GTPase activator activity [Evidence IEA]; GO_function: GO:0005097 - Rab GTPase activator activity [Evidence IGI,IPI,ISS] [PMID 12189143]; GO_function: GO:0005097 - Rab GTPase activator activity [Evidence IGI,IPI] [PMID 15802519]; GO_process: GO:0006888 - ER to Golgi vesicle-mediated transport [Evidence IGI,IPI] [PMID 15802519]; GO_process: GO:0006887 - exocytosis [Evidence IEA]; GO_process: GO:0043547 - positive regulation of GTPase activity [Evidence IEA]; GO_process: GO:0032851 - positive regulation of Rab GTPase activity [Evidence IEA]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0032313 - regulation of Rab GTPase activity [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IEA]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IGI] [PMID 12189143]; Gyp5p 79138 GYP5 30036779 GYP5 Sugiyamaella lignohabitans Gyp5p XP_018736160.1 76568 D 796027 CDS AWJ20_4627 30036780 80554..81120 D 1 NC_031673.1 Subunit of the membrane-associated retromer complex; endosomal protein; essential for endosome-to-Golgi retrograde transport; forms a subcomplex with Vps35p and Vps26p that selects cargo proteins for endosome-to-Golgi retrieval; GO_component: GO:0005768 - endosome [Evidence IPI] [PMID 9700157]; GO_component: GO:0030904 - retromer complex [Evidence IMP,IPI] [PMID 9700157]; GO_component: GO:0030906 - retromer complex, inner shell [Evidence IPI] [PMID 9700157]; GO_function: GO:0008565 - protein transporter activity [Evidence IMP,IPI] [PMID 9700157]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0042147 - retrograde transport, endosome to Golgi [Evidence IPI] [PMID 9700157]; GO_process: GO:0006810 - transport [Evidence IEA]; Vps29p 81120 VPS29 30036780 VPS29 Sugiyamaella lignohabitans Vps29p XP_018736161.1 80554 D 796027 CDS AWJ20_4628 30036781 complement(82014..83429) D 1 NC_031673.1 Cytosolic serine hydroxymethyltransferase; converts serine to glycine plus 5,10 methylenetetrahydrofolate; major isoform involved in generating precursors for purine, pyrimidine, amino acid, and lipid biosynthesis; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 12700234]; GO_component: GO:0005737 - cytoplasm [Evidence IMP] [PMID 8132653]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 19053807]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 16622836]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0004372 - glycine hydroxymethyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0004372 - glycine hydroxymethyltransferase activity [Evidence IMP] [PMID 8132653]; GO_function: GO:0004372 - glycine hydroxymethyltransferase activity [Evidence IMP] [PMID 9398220]; GO_function: GO:0030170 - pyridoxal phosphate binding [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006563 - L-serine metabolic process [Evidence IEA]; GO_process: GO:0006544 - glycine metabolic process [Evidence IEA]; GO_process: GO:0006730 - one-carbon metabolic process [Evidence IEA]; GO_process: GO:0006730 - one-carbon metabolic process [Evidence IMP] [PMID 8132653]; GO_process: GO:0006730 - one-carbon metabolic process [Evidence IGI,IMP] [PMID 9398220]; GO_process: GO:0035999 - tetrahydrofolate interconversion [Evidence IEA]; glycine hydroxymethyltransferase SHM2 83429 SHM2 30036781 SHM2 Sugiyamaella lignohabitans glycine hydroxymethyltransferase SHM2 XP_018736162.1 82014 R 796027 CDS AWJ20_4629 30036782 complement(84309..85184) D 1 NC_031673.1 uncharacterized protein 85184 30036782 AWJ20_4629 Sugiyamaella lignohabitans uncharacterized protein XP_018736163.1 84309 R 796027 CDS AWJ20_4630 30036784 88864..91776 D 1 NC_031673.1 uncharacterized protein 91776 30036784 AWJ20_4630 Sugiyamaella lignohabitans uncharacterized protein XP_018736164.1 88864 D 796027 CDS AWJ20_4631 30036785 92091..93134 D 1 NC_031673.1 Hsp90 cochaperone; interacts with the Ssa group of the cytosolic Hsp70 chaperones and activates Ssa1p ATPase activity; interacts with Hsp90 chaperones and inhibits their ATPase activity; homolog of mammalian Hop; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IPI] [PMID 12525481]; GO_function: GO:0042030 - ATPase inhibitor activity [Evidence IDA] [PMID 21170051]; GO_function: GO:0030544 - Hsp70 protein binding [Evidence IDA] [PMID 12716905]; GO_function: GO:0051879 - Hsp90 protein binding [Evidence IDA] [PMID 12525481]; GO_function: GO:0051879 - Hsp90 protein binding [Evidence IDA] [PMID 9927435]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 21124907]; GO_process: GO:0006457 - protein folding [Evidence IGI,IMP] [PMID 8972212]; GO_process: GO:0006950 - response to stress [Evidence IEA]; Hsp90 cochaperone STI1 93134 STI1 30036785 STI1 Sugiyamaella lignohabitans Hsp90 cochaperone STI1 XP_018736165.1 92091 D 796027 CDS AWJ20_4632 30036786 93618..94421 D 1 NC_031673.1 Negative regulator of eIF2 kinase Gcn2p; competes with Gcn2p for binding to Gcn1p; may contribute to regulation of translation in response to starvation via regulation of Gcn2p; binds to monomeric actin and to ribosomes and polyribosomes; ortholog of mammalian IMPACT; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005844 - polysome [Evidence IDA] [PMID 22404850]; GO_component: GO:0005840 - ribosome [Evidence IDA] [PMID 22404850]; GO_function: GO:0003779 - actin binding [Evidence IEA]; GO_function: GO:0003785 - actin monomer binding [Evidence IDA] [PMID 15126500]; GO_function: GO:0004860 - protein kinase inhibitor activity [Evidence IMP] [PMID 15126500]; GO_function: GO:0043022 - ribosome binding [Evidence IDA] [PMID 22404850]; GO_process: GO:0001933 - negative regulation of protein phosphorylation [Evidence IMP] [PMID 15126500]; GO_process: GO:0006417 - regulation of translation [Evidence IEA]; Yih1p 94421 YIH1 30036786 YIH1 Sugiyamaella lignohabitans Yih1p XP_018736166.1 93618 D 796027 CDS AWJ20_4633 30036787 95708..98530 D 1 NC_031673.1 Conserved 90S pre-ribosomal component; essential for proper endonucleolytic cleavage of the 35 S rRNA precursor at A0, A1, and A2 sites; contains eight WD-repeats; PWP2 deletion leads to defects in cell cycle and bud morphogenesis; GO_component: GO:0030686 - 90S preribosome [Evidence IDA] [PMID 12150911]; GO_component: GO:0030686 - 90S preribosome [Evidence IDA] [PMID 15231838]; GO_component: GO:0034388 - Pwp2p-containing subcomplex of 90S preribosome [Evidence IDA] [PMID 15231838]; GO_component: GO:0034388 - Pwp2p-containing subcomplex of 90S preribosome [Evidence IDA] [PMID 17515605]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 8804409]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 12068309]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 12150911]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0032040 - small-subunit processome [Evidence IDA] [PMID 12068309]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_function: GO:0030515 - snoRNA binding [Evidence IPI] [PMID 12068309]; GO_process: GO:0007109 - cytokinesis, completion of separation [Evidence IMP] [PMID 8804409]; GO_process: GO:0000480 - endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 15231838]; GO_process: GO:0000480 - endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 15489292]; GO_process: GO:0000480 - endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 15590835]; GO_process: GO:0000447 - endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 15231838]; GO_process: GO:0000447 - endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 15489292]; GO_process: GO:0000447 - endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 15590835]; GO_process: GO:0000472 - endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 15231838]; GO_process: GO:0000472 - endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 15489292]; GO_process: GO:0000472 - endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 15590835]; GO_process: GO:0030010 - establishment of cell polarity [Evidence IMP] [PMID 8804409]; GO_process: GO:0000462 - maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 12068309]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; Pwp2p 98530 PWP2 30036787 PWP2 Sugiyamaella lignohabitans Pwp2p XP_018736167.1 95708 D 796027 CDS AWJ20_4634 30036788 99978..101096 D 1 NC_031673.1 Essential hypothetical protein; with orthologs in Ashbya gossypii and Candida albicans; similar to human ATXN10, mutations in which cause spinocerebellar ataxia type 10; codon usage corresponds to that observed for yeast genes expressed at low levels; relative distribution to the nucleus increases upon DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0009088 - threonine biosynthetic process [Evidence IEA]; Ctr86p 101096 CTR86 30036788 CTR86 Sugiyamaella lignohabitans Ctr86p XP_018736168.1 99978 D 796027 CDS AWJ20_4635 30036789 complement(101252..103252) D 1 NC_031673.1 uncharacterized protein 103252 30036789 AWJ20_4635 Sugiyamaella lignohabitans uncharacterized protein XP_018736169.1 101252 R 796027 CDS AWJ20_4636 30036790 complement(104652..106517) D 1 NC_031673.1 uncharacterized protein 106517 30036790 AWJ20_4636 Sugiyamaella lignohabitans uncharacterized protein XP_018736170.1 104652 R 796027 CDS AWJ20_4637 30036791 108419..109786 D 1 NC_031673.1 Gamma-glutamyl phosphate reductase; catalyzes the second step in proline biosynthesis; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0050661 - NADP binding [Evidence IEA]; GO_function: GO:0004350 - glutamate-5-semialdehyde dehydrogenase activity [Evidence IEA,IEA]; GO_function: GO:0004350 - glutamate-5-semialdehyde dehydrogenase activity [Evidence IDA] [PMID 12513997]; GO_function: GO:0004350 - glutamate-5-semialdehyde dehydrogenase activity [Evidence IGI] [PMID 2824433]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0016620 - oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor [Evidence IEA]; GO_process: GO:0055129 - L-proline biosynthetic process [Evidence IEA]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0006561 - proline biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0006561 - proline biosynthetic process [Evidence TAS] [PMID 11084050]; GO_process: GO:0006561 - proline biosynthetic process [Evidence IDA] [PMID 12513997]; glutamate-5-semialdehyde dehydrogenase 109786 PRO2 30036791 PRO2 Sugiyamaella lignohabitans glutamate-5-semialdehyde dehydrogenase XP_018736171.1 108419 D 796027 CDS AWJ20_4638 30036792 complement(109973..112303) D 1 NC_031673.1 Trans-golgi network aminophospholipid translocase (flippase); maintains membrane lipid asymmetry in post-Golgi secretory vesicles; contributes to clathrin-coated vesicle formation and endocytosis; subject to auto-inhibition by its C-terminal tail; mutations in human homolog ATP8B1 result in liver disease; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005802 - trans-Golgi network [Evidence IDA] [PMID 10601336]; GO_component: GO:0005802 - trans-Golgi network [Evidence IDA] [PMID 12221123]; GO_component: GO:0005802 - trans-Golgi network [Evidence IDA] [PMID 15090616]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0019829 - cation-transporting ATPase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0000287 - magnesium ion binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_function: GO:0004012 - phospholipid-translocating ATPase activity [Evidence IEA,IEA]; GO_function: GO:0004012 - phospholipid-translocating ATPase activity [Evidence IGI] [PMID 15090616]; GO_function: GO:0004012 - phospholipid-translocating ATPase activity [Evidence IMP] [PMID 15249668]; GO_function: GO:0004012 - phospholipid-translocating ATPase activity [Evidence IGI,IMP] [PMID 16452632]; GO_function: GO:0004012 - phospholipid-translocating ATPase activity [Evidence IMP] [PMID 8633245]; GO_process: GO:0006812 - cation transport [Evidence IEA]; GO_process: GO:0032456 - endocytic recycling [Evidence IMP] [PMID 24272750]; GO_process: GO:0006897 - endocytosis [Evidence IGI] [PMID 12631737]; GO_process: GO:0006897 - endocytosis [Evidence IGI] [PMID 16195350]; GO_process: GO:0006886 - intracellular protein transport [Evidence IGI] [PMID 12221123]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0045332 - phospholipid translocation [Evidence IMP] [PMID 15249668]; GO_process: GO:0045332 - phospholipid translocation [Evidence IMP] [PMID 16452632]; GO_process: GO:0015914 - phospholipid transport [Evidence IEA]; GO_process: GO:0006892 - post-Golgi vesicle-mediated transport [Evidence IGI,IMP] [PMID 10601336]; GO_process: GO:0000028 - ribosomal small subunit assembly [Evidence IMP] [PMID 8247005]; aminophospholipid-translocating P4-type ATPase DRS2 112303 DRS2 30036792 DRS2 Sugiyamaella lignohabitans aminophospholipid-translocating P4-type ATPase DRS2 XP_018736172.1 109973 R 796027 CDS AWJ20_4639 30036793 complement(112477..114270) D 1 NC_031673.1 Trans-golgi network aminophospholipid translocase (flippase); maintains membrane lipid asymmetry in post-Golgi secretory vesicles; contributes to clathrin-coated vesicle formation and endocytosis; subject to auto-inhibition by its C-terminal tail; mutations in human homolog ATP8B1 result in liver disease; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005802 - trans-Golgi network [Evidence IDA] [PMID 10601336]; GO_component: GO:0005802 - trans-Golgi network [Evidence IDA] [PMID 12221123]; GO_component: GO:0005802 - trans-Golgi network [Evidence IDA] [PMID 15090616]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0019829 - cation-transporting ATPase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0000287 - magnesium ion binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_function: GO:0004012 - phospholipid-translocating ATPase activity [Evidence IEA,IEA]; GO_function: GO:0004012 - phospholipid-translocating ATPase activity [Evidence IGI] [PMID 15090616]; GO_function: GO:0004012 - phospholipid-translocating ATPase activity [Evidence IMP] [PMID 15249668]; GO_function: GO:0004012 - phospholipid-translocating ATPase activity [Evidence IGI,IMP] [PMID 16452632]; GO_function: GO:0004012 - phospholipid-translocating ATPase activity [Evidence IMP] [PMID 8633245]; GO_process: GO:0006812 - cation transport [Evidence IEA]; GO_process: GO:0032456 - endocytic recycling [Evidence IMP] [PMID 24272750]; GO_process: GO:0006897 - endocytosis [Evidence IGI] [PMID 12631737]; GO_process: GO:0006897 - endocytosis [Evidence IGI] [PMID 16195350]; GO_process: GO:0006886 - intracellular protein transport [Evidence IGI] [PMID 12221123]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0045332 - phospholipid translocation [Evidence IMP] [PMID 15249668]; GO_process: GO:0045332 - phospholipid translocation [Evidence IMP] [PMID 16452632]; GO_process: GO:0015914 - phospholipid transport [Evidence IEA]; GO_process: GO:0006892 - post-Golgi vesicle-mediated transport [Evidence IGI,IMP] [PMID 10601336]; GO_process: GO:0000028 - ribosomal small subunit assembly [Evidence IMP] [PMID 8247005]; aminophospholipid-translocating P4-type ATPase DRS2 114270 DRS2 30036793 DRS2 Sugiyamaella lignohabitans aminophospholipid-translocating P4-type ATPase DRS2 XP_018736173.1 112477 R 796027 CDS AWJ20_4640 30036795 121028..122083 D 1 NC_031673.1 Subunit of a Golgi mannosyltransferase complex; complex mediates elongation of the polysaccharide mannan backbone; membrane protein of the mannosyltransferase family; other members of the complex are Anp1p, Mnn9p, Mnn11p, and Hoc1p; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA,IEA]; GO_component: GO:0000136 - alpha-1,6-mannosyltransferase complex [Evidence IDA] [PMID 10037752]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0000009 - alpha-1,6-mannosyltransferase activity [Evidence IDA] [PMID 10037752]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA]; GO_function: GO:0016758 - transferase activity, transferring hexosyl groups [Evidence IEA]; GO_process: GO:0000917 - barrier septum assembly [Evidence IMP] [PMID 16034811]; GO_process: GO:0000032 - cell wall mannoprotein biosynthetic process [Evidence IMP] [PMID 10037752]; GO_process: GO:0006487 - protein N-linked glycosylation [Evidence IMP] [PMID 23210626]; GO_process: GO:0006487 - protein N-linked glycosylation [Evidence IMP] [PMID 8991513]; Mnn10p 122083 MNN10 30036795 MNN10 Sugiyamaella lignohabitans Mnn10p XP_018736174.1 121028 D 796027 CDS AWJ20_4641 30036796 complement(123523..124443) D 1 NC_031673.1 Protein proposed to be involved in vacuolar functions; mutant shows defect in CPY processing and defects in vacuolar morphology; has similarity to oxidoreductases, found in lipid particles; required for replication of Brome mosaic virus in S. cerevisiae, a model system for studying replication of positive-strand RNA viruses in their natural hosts; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0005811 - lipid particle [Evidence IEA,IEA]; GO_component: GO:0005811 - lipid particle [Evidence IDA] [PMID 14562095]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence ISS] [PMID 8972580]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; GO_process: GO:0006624 - vacuolar protein processing [Evidence IMP] [PMID 21912603]; GO_process: GO:0007033 - vacuole organization [Evidence IMP] [PMID 21912603]; Env9p 124443 ENV9 30036796 ENV9 Sugiyamaella lignohabitans Env9p XP_018736175.1 123523 R 796027 CDS AWJ20_4642 30036797 126168..130211 D 1 NC_031673.1 Subunit of the SWI/SNF chromatin remodeling complex; regulates transcription by remodeling chromatin; required for transcription of many genes, including ADH1, ADH2, GAL1, HO, INO1 and SUC2; can form the prion [SWI+]; human homolog ARID1A is a candidate tumor suppressor gene in breast cancer; GO_component: GO:0016514 - SWI/SNF complex [Evidence IDA] [PMID 18644858]; GO_component: GO:0016514 - SWI/SNF complex [Evidence IDA] [PMID 8016655]; GO_component: GO:0016514 - SWI/SNF complex [Evidence IDA] [PMID 8127913]; GO_component: GO:0016514 - SWI/SNF complex [Evidence IDA,IMP] [PMID 8159677]; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 3143101]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0015616 - DNA translocase activity [Evidence IDA] [PMID 17188033]; GO_function: GO:0001102 - RNA polymerase II activating transcription factor binding [Evidence IPI] [PMID 11865042]; GO_function: GO:0001102 - RNA polymerase II activating transcription factor binding [Evidence IMP,IPI] [PMID 14580348]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_process: GO:0043044 - ATP-dependent chromatin remodeling [Evidence IDA] [PMID 8016655]; GO_process: GO:0006261 - DNA-dependent DNA replication [Evidence IMP] [PMID 10198436]; GO_process: GO:0000436 - carbon catabolite activation of transcription from RNA polymerase II promoter [Evidence IGI] [PMID 14580348]; GO_process: GO:0044109 - cellular alcohol catabolic process [Evidence IMP] [PMID 1339306]; GO_process: GO:0031496 - positive regulation of mating type switching [Evidence IMP] [PMID 6436497]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 1339306]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 3542227]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 8016655]; GO_process: GO:0061412 - positive regulation of transcription from RNA polymerase II promoter in response to amino acid starvation [Evidence IMP] [PMID 10549298]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0005987 - sucrose catabolic process [Evidence IMP] [PMID 1339306]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Swi1p 130211 SWI1 30036797 SWI1 Sugiyamaella lignohabitans Swi1p XP_018736176.1 126168 D 796027 CDS AWJ20_4643 30036798 complement(130280..133468) D 1 NC_031673.1 ssDNA endodeoxyribonuclease RAD1 133468 RAD1 30036798 RAD1 Sugiyamaella lignohabitans ssDNA endodeoxyribonuclease RAD1 XP_018736177.1 130280 R 796027 CDS AWJ20_4644 30036799 134318..136012 D 1 NC_031673.1 Peroxisomal integral membrane peroxin; involved in the regulation of peroxisomal size, number and distribution; genetic interactions suggest that Pex28p and Pex29p act at steps upstream of those mediated by Pex30p, Pex31p, and Pex32p; forms ER foci upon DNA replication stress; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005778 - peroxisomal membrane [Evidence IEA]; GO_component: GO:0005778 - peroxisomal membrane [Evidence IDA] [PMID 12707309]; GO_component: GO:0005777 - peroxisome [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0007031 - peroxisome organization [Evidence IEA]; GO_process: GO:0007031 - peroxisome organization [Evidence IDA,IGI,IMP] [PMID 12707309]; Pex29p 136012 PEX29 30036799 PEX29 Sugiyamaella lignohabitans Pex29p XP_018736178.1 134318 D 796027 CDS AWJ20_4645 30036800 complement(136122..140093) D 1 NC_031673.1 Formylglycinamidine-ribonucleotide (FGAM)-synthetase; catalyzes a step in the 'de novo' purine nucleotide biosynthetic pathway; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0004642 - phosphoribosylformylglycinamidine synthase activity [Evidence IEA,IEA]; GO_function: GO:0004642 - phosphoribosylformylglycinamidine synthase activity [Evidence IMP] [PMID 9331966]; GO_process: GO:0006189 - 'de novo' IMP biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0006189 - 'de novo' IMP biosynthetic process [Evidence IC] [PMID 9331966]; GO_process: GO:0006541 - glutamine metabolic process [Evidence IEA]; GO_process: GO:0006164 - purine nucleotide biosynthetic process [Evidence IEA]; GO_process: GO:0006164 - purine nucleotide biosynthetic process [Evidence IMP] [PMID 1743513]; phosphoribosylformylglycinamidine synthase 140093 ADE6 30036800 ADE6 Sugiyamaella lignohabitans phosphoribosylformylglycinamidine synthase XP_018736179.1 136122 R 796027 CDS AWJ20_4646 30036801 140749..141036 D 1 NC_031673.1 uncharacterized protein 141036 30036801 AWJ20_4646 Sugiyamaella lignohabitans uncharacterized protein XP_018736180.1 140749 D 796027 CDS AWJ20_4647 30036802 142946..143905 D 1 NC_031673.1 Twinfilin; highly conserved actin monomer-sequestering protein involved in regulation of the cortical actin cytoskeleton; coordinates actin filament severing and monomer sequestering at sites of rapid actin turnover; composed of two cofilin-like regions, localizes actin monomers to sites of rapid filament assembly; GO_component: GO:0030479 - actin cortical patch [Evidence TAS] [PMID 10652251]; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA,IEA]; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 19053807]; GO_function: GO:0003779 - actin binding [Evidence IEA,IEA]; GO_function: GO:0051015 - actin filament binding [Evidence IDA] [PMID 16569665]; GO_function: GO:0003785 - actin monomer binding [Evidence IDA] [PMID 9700161]; GO_process: GO:0044396 - actin cortical patch organization [Evidence IMP] [PMID 16569665]; GO_process: GO:0030042 - actin filament depolymerization [Evidence IDA] [PMID 16569665]; GO_process: GO:0007015 - actin filament organization [Evidence IDA,IMP] [PMID 16569665]; GO_process: GO:0051014 - actin filament severing [Evidence IDA,IMP] [PMID 16569665]; GO_process: GO:0030837 - negative regulation of actin filament polymerization [Evidence IEA]; GO_process: GO:0042989 - sequestering of actin monomers [Evidence IDA] [PMID 9700161]; Twf1p 143905 TWF1 30036802 TWF1 Sugiyamaella lignohabitans Twf1p XP_018736181.1 142946 D 796027 CDS AWJ20_4648 30036803 complement(144144..144980) D 1 NC_031673.1 Mitochondrial succinate-fumarate transporter; transports succinate into and fumarate out of the mitochondrion; required for ethanol and acetate utilization; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence ISS] [PMID 7908717]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0005469 - succinate:fumarate antiporter activity [Evidence IDA] [PMID 9395087]; GO_process: GO:0015741 - fumarate transport [Evidence IDA] [PMID 9395087]; GO_process: GO:0015744 - succinate transport [Evidence IDA] [PMID 9395087]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Sfc1p 144980 SFC1 30036803 SFC1 Sugiyamaella lignohabitans Sfc1p XP_018736182.1 144144 R 796027 CDS AWJ20_4649 30036804 150734..152857 D 1 NC_031673.1 Component of the RSC chromatin remodeling complex; DNA-binding protein involved in the synthesis of rRNA and in transcriptional repression and activation of genes regulated by the Target of Rapamycin (TOR) pathway; GO_component: GO:0016586 - RSC complex [Evidence IDA] [PMID 10619019]; GO_component: GO:0016586 - RSC complex [Evidence IDA] [PMID 11931764]; GO_component: GO:0016586 - RSC complex [Evidence IDA] [PMID 12183366]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0015616 - DNA translocase activity [Evidence IDA] [PMID 12183366]; GO_function: GO:0015616 - DNA translocase activity [Evidence IDA] [PMID 16455496]; GO_function: GO:0015616 - DNA translocase activity [Evidence IDA] [PMID 17188033]; GO_function: GO:0015616 - DNA translocase activity [Evidence IDA] [PMID 17918861]; GO_function: GO:0003682 - chromatin binding [Evidence IPI] [PMID 11931764]; GO_process: GO:0043044 - ATP-dependent chromatin remodeling [Evidence IDA,IDA] [PMID 12183366]; GO_process: GO:0000086 - G2/M transition of mitotic cell cycle [Evidence IMP] [PMID 17542652]; GO_process: GO:0070301 - cellular response to hydrogen peroxide [Evidence IDA] [PMID 11931764]; GO_process: GO:0016568 - chromatin modification [Evidence IEA]; GO_process: GO:0006338 - chromatin remodeling [Evidence IPI] [PMID 11931764]; GO_process: GO:0006337 - nucleosome disassembly [Evidence IDA] [PMID 16492771]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0009303 - rRNA transcription [Evidence IMP] [PMID 11931764]; GO_process: GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 11931764]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA,IEA]; GO_process: GO:0006368 - transcription elongation from RNA polymerase II promoter [Evidence IDA] [PMID 17081996]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; GO_process: GO:0061587 - transfer RNA gene-mediated silencing [Evidence IMP] [PMID 23707796]; Rsc9p 152857 RSC9 30036804 RSC9 Sugiyamaella lignohabitans Rsc9p XP_018736183.1 150734 D 796027 CDS AWJ20_4650 30036806 155378..155926 D 1 NC_031673.1 uncharacterized protein 155926 30036806 AWJ20_4650 Sugiyamaella lignohabitans uncharacterized protein XP_018736184.1 155378 D 796027 CDS AWJ20_4651 30036807 complement(158555..159265) D 1 NC_031673.1 uncharacterized protein 159265 30036807 AWJ20_4651 Sugiyamaella lignohabitans uncharacterized protein XP_018736185.1 158555 R 796027 CDS AWJ20_4652 30036808 160555..162177 D 1 NC_031673.1 uncharacterized protein 162177 30036808 AWJ20_4652 Sugiyamaella lignohabitans uncharacterized protein XP_018736186.1 160555 D 796027 CDS AWJ20_4653 30036809 complement(162426..162887) D 1 NC_031673.1 Cytochrome c oxidase subunit; required for assembly of the Complex III-Complex IV supercomplex, and for assembly of Cox13p and Rcf2p into cytochrome c oxidase; similar to Rcf2p, and either Rcf1p or Rcf2p is required for late-stage assembly of the Cox12p and Cox13p subunits and for cytochrome c oxidase activity; required for growth under hypoxic conditions; member of the hypoxia induced gene family; C. elegans and human orthologs are functional in yeast; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0031305 - integral component of mitochondrial inner membrane [Evidence IDA] [PMID 22310663]; GO_component: GO:0031305 - integral component of mitochondrial inner membrane [Evidence IDA] [PMID 22342701]; GO_component: GO:0031305 - integral component of mitochondrial inner membrane [Evidence IDA] [PMID 22405070]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0031966 - mitochondrial membrane [Evidence IEA]; GO_component: GO:0097249 - mitochondrial respiratory chain supercomplex [Evidence IDA] [PMID 22310663]; GO_component: GO:0097249 - mitochondrial respiratory chain supercomplex [Evidence IDA] [PMID 22342701]; GO_component: GO:0097249 - mitochondrial respiratory chain supercomplex [Evidence IDA] [PMID 22405070]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0033617 - mitochondrial respiratory chain complex IV assembly [Evidence IGI] [PMID 22310663]; GO_process: GO:0097250 - mitochondrial respiratory chain supercomplex assembly [Evidence IMP] [PMID 22342701]; GO_process: GO:0097250 - mitochondrial respiratory chain supercomplex assembly [Evidence IMP] [PMID 22405070]; Rcf1p 162887 RCF1 30036809 RCF1 Sugiyamaella lignohabitans Rcf1p XP_018736187.1 162426 R 796027 CDS AWJ20_4654 30036810 complement(163421..163678) D 1 NC_031673.1 Guanylate kinase; converts GMP to GDP; required for growth and mannose outer chain elongation of cell wall N-linked glycoproteins; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0004385 - guanylate kinase activity [Evidence IEA,IEA]; GO_function: GO:0004385 - guanylate kinase activity [Evidence IDA] [PMID 1334480]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0046037 - GMP metabolic process [Evidence TAS] [PMID 11035032]; GO_process: GO:0046939 - nucleotide phosphorylation [Evidence IEA,IEA]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; GO_process: GO:0006163 - purine nucleotide metabolic process [Evidence IEA]; guanylate kinase 163678 GUK1 30036810 GUK1 Sugiyamaella lignohabitans guanylate kinase XP_018736188.1 163421 R 796027 CDS AWJ20_4655 30036811 164583..165614 D 1 NC_031673.1 uncharacterized protein 165614 30036811 AWJ20_4655 Sugiyamaella lignohabitans uncharacterized protein XP_018736189.1 164583 D 796027 CDS AWJ20_4656 30036812 168708..170060 D 1 NC_031673.1 Phosphatidylinositol transfer protein; has a potential role in regulating lipid and fatty acid metabolism under heme-depleted conditions; interacts specifically with thioredoxin peroxidase; may have a role in oxidative stress resistance; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 12869188]; GO_component: GO:0005768 - endosome [Evidence IEA,IEA]; GO_component: GO:0005768 - endosome [Evidence IDA] [PMID 10848624]; GO_component: GO:0005768 - endosome [Evidence IDA] [PMID 12869188]; GO_component: GO:0005811 - lipid particle [Evidence IDA] [PMID 17803462]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005628 - prospore membrane [Evidence IDA] [PMID 24390141]; GO_function: GO:0008525 - phosphatidylcholine transporter activity [Evidence IDA] [PMID 10848624]; GO_function: GO:0008526 - phosphatidylinositol transporter activity [Evidence IDA] [PMID 10848624]; GO_process: GO:0043001 - Golgi to plasma membrane protein transport [Evidence IGI] [PMID 10848624]; GO_process: GO:0006893 - Golgi to plasma membrane transport [Evidence IGI] [PMID 16126894]; GO_process: GO:0016042 - lipid catabolic process [Evidence IEA]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0006869 - lipid transport [Evidence IEA]; GO_process: GO:0045717 - negative regulation of fatty acid biosynthetic process [Evidence IDA,IGI,IMP] [PMID 17803462]; GO_process: GO:1901352 - negative regulation of phosphatidylglycerol biosynthetic process [Evidence IGI] [PMID 12869188]; GO_process: GO:0046488 - phosphatidylinositol metabolic process [Evidence IGI] [PMID 16262726]; GO_process: GO:0009395 - phospholipid catabolic process [Evidence IEA]; GO_process: GO:0015914 - phospholipid transport [Evidence IDA] [PMID 10848624]; GO_process: GO:2001247 - positive regulation of phosphatidylcholine biosynthetic process [Evidence IGI] [PMID 12869188]; GO_process: GO:0006810 - transport [Evidence IEA]; Csr1p 170060 CSR1 30036812 CSR1 Sugiyamaella lignohabitans Csr1p XP_018736190.1 168708 D 796027 CDS AWJ20_4657 30036813 172055..172846 D 1 NC_031673.1 uncharacterized protein 172846 30036813 AWJ20_4657 Sugiyamaella lignohabitans uncharacterized protein XP_018736191.1 172055 D 796027 CDS AWJ20_4658 30036814 174040..174744 D 1 NC_031673.1 Plasma membrane riboflavin transporter; facilitates the uptake of vitamin B2; required for FAD-dependent processes; sequence similarity to mammalian monocarboxylate permeases, however mutants are not deficient in monocarboxylate transport; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 16204239]; GO_function: GO:0008028 - monocarboxylic acid transmembrane transporter activity [Evidence IGI,IMP] [PMID 11536335]; GO_function: GO:0032217 - riboflavin transporter activity [Evidence IGI] [PMID 16204239]; GO_process: GO:0032218 - riboflavin transport [Evidence IGI] [PMID 16204239]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Mch5p 174744 MCH5 30036814 MCH5 Sugiyamaella lignohabitans Mch5p XP_018736192.1 174040 D 796027 CDS AWJ20_4659 30036815 174814..175548 D 1 NC_031673.1 Plasma membrane riboflavin transporter; facilitates the uptake of vitamin B2; required for FAD-dependent processes; sequence similarity to mammalian monocarboxylate permeases, however mutants are not deficient in monocarboxylate transport; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 16204239]; GO_function: GO:0008028 - monocarboxylic acid transmembrane transporter activity [Evidence IGI,IMP] [PMID 11536335]; GO_function: GO:0032217 - riboflavin transporter activity [Evidence IGI] [PMID 16204239]; GO_process: GO:0032218 - riboflavin transport [Evidence IGI] [PMID 16204239]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Mch5p 175548 MCH5 30036815 MCH5 Sugiyamaella lignohabitans Mch5p XP_018736193.1 174814 D 796027 CDS AWJ20_4660 30036817 complement(177061..177663) D 1 NC_031673.1 Putative phosphomutase; contains a region homologous to the active site of phosphomutases; overexpression suppresses the histidine auxotrophy of an ade3 ade16 ade17 triple mutant and the temperature sensitivity of a tps2 mutant; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0016853 - isomerase activity [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; Pmu1p 177663 PMU1 30036817 PMU1 Sugiyamaella lignohabitans Pmu1p XP_018736194.1 177061 R 796027 CDS AWJ20_4662 30036818 181907..182890 D 1 NC_031673.1 Negative regulator of the H(+)-ATPase Pma1p; stress-responsive protein; hydrophobic plasma membrane localized; induced by heat shock, ethanol treatment, weak organic acid, glucose limitation, and entry into stationary phase; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 1535043]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 16622836]; GO_component: GO:0005886 - plasma membrane [Evidence ISS] [PMID 8319300]; GO_function: GO:0005216 - ion channel activity [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEP] [PMID 10206703]; GO_process: GO:0071361 - cellular response to ethanol [Evidence IEP] [PMID 10206703]; GO_process: GO:0034605 - cellular response to heat [Evidence IEP] [PMID 10206703]; GO_process: GO:0070301 - cellular response to hydrogen peroxide [Evidence IEP] [PMID 10206703]; GO_process: GO:0071470 - cellular response to osmotic stress [Evidence IEP] [PMID 10206703]; GO_process: GO:0034220 - ion transmembrane transport [Evidence IEA]; GO_process: GO:0006811 - ion transport [Evidence IEA]; GO_process: GO:0032780 - negative regulation of ATPase activity [Evidence IMP] [PMID 9250391]; GO_process: GO:0006950 - response to stress [Evidence IEA]; Hsp30p 182890 HSP30 30036818 HSP30 Sugiyamaella lignohabitans Hsp30p XP_018736195.1 181907 D 796027 CDS AWJ20_4663 30036819 complement(183038..184132) D 1 NC_031673.1 DNA N-glycosylase and apurinic/apyrimidinic (AP) lyase; involved in base excision repair, localizes to the nucleus; sumoylated; NTG2 has a paralog, NTG1, that arose from the whole genome duplication; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 10471279]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 19029246]; GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA,IEA]; GO_function: GO:0003906 - DNA-(apurinic or apyrimidinic site) lyase activity [Evidence IEA]; GO_function: GO:0003906 - DNA-(apurinic or apyrimidinic site) lyase activity [Evidence IDA] [PMID 14500818]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016798 - hydrolase activity, acting on glycosyl bonds [Evidence IEA]; GO_function: GO:0051536 - iron-sulfur cluster binding [Evidence IEA]; GO_function: GO:0016829 - lyase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0000703 - oxidized pyrimidine nucleobase lesion DNA N-glycosylase activity [Evidence IDA,ISS] [PMID 9020769]; GO_process: GO:0000737 - DNA catabolic process, endonucleolytic [Evidence IEA]; GO_process: GO:0006281 - DNA repair [Evidence IEA,IEA]; GO_process: GO:0006284 - base-excision repair [Evidence IEA]; GO_process: GO:0006284 - base-excision repair [Evidence IDA] [PMID 14500818]; GO_process: GO:0006285 - base-excision repair, AP site formation [Evidence IDA] [PMID 9826748]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; bifunctional N-glycosylase/AP lyase NTG2 184132 NTG2 30036819 NTG2 Sugiyamaella lignohabitans bifunctional N-glycosylase/AP lyase NTG2 XP_018736196.1 183038 R 796027 CDS AWJ20_4664 30036820 complement(184427..186664) D 1 NC_031673.1 CCR4-NOT core exoribonuclease subunit CCR4 186664 CCR4 30036820 CCR4 Sugiyamaella lignohabitans CCR4-NOT core exoribonuclease subunit CCR4 XP_018736197.1 184427 R 796027 CDS AWJ20_4665 30036821 189102..189683 D 1 NC_031673.1 Thioredoxin peroxidase; acts as both a ribosome-associated and free cytoplasmic antioxidant; self-associates to form high-molecular weight chaperone complex under oxidative stress; deletion causes mutator phenotype; protein abundance increases and forms cytoplasmic foci during DNA replication stress; chaperone activity is essential for growth under zinc deficiency; required for telomere length maintenance; TSA1 has a paralog, TSA2, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 10681558]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 8344960]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 18271751]; GO_component: GO:0005844 - polysome [Evidence IDA] [PMID 18271751]; GO_function: GO:0016209 - antioxidant activity [Evidence IEA,IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0004601 - peroxidase activity [Evidence IEA]; GO_function: GO:0051920 - peroxiredoxin activity [Evidence IEA,IEA]; GO_function: GO:0051920 - peroxiredoxin activity [Evidence IDA] [PMID 17210445]; GO_function: GO:0043022 - ribosome binding [Evidence IDA] [PMID 18271751]; GO_function: GO:0008379 - thioredoxin peroxidase activity [Evidence IDA,IMP] [PMID 7961686]; GO_function: GO:0008379 - thioredoxin peroxidase activity [Evidence IDA,IMP] [PMID 9799566]; GO_function: GO:0051082 - unfolded protein binding [Evidence IMP] [PMID 16251355]; GO_process: GO:0000077 - DNA damage checkpoint [Evidence IGI] [PMID 19851444]; GO_process: GO:0042262 - DNA protection [Evidence IMP] [PMID 19543365]; GO_process: GO:0045454 - cell redox homeostasis [Evidence IDA,IMP] [PMID 8344960]; GO_process: GO:0045454 - cell redox homeostasis [Evidence IMP] [PMID 9799566]; GO_process: GO:0034599 - cellular response to oxidative stress [Evidence IGI] [PMID 15051715]; GO_process: GO:0034599 - cellular response to oxidative stress [Evidence IMP] [PMID 18271751]; GO_process: GO:0034599 - cellular response to oxidative stress [Evidence IDA,IMP] [PMID 8344960]; GO_process: GO:0061077 - chaperone-mediated protein folding [Evidence IMP] [PMID 24022485]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0006457 - protein folding [Evidence IMP] [PMID 16251355]; GO_process: GO:0001302 - replicative cell aging [Evidence IMP] [PMID 20729566]; GO_process: GO:0033194 - response to hydroperoxide [Evidence IMP] [PMID 15210711]; thioredoxin peroxidase TSA1 189683 TSA1 30036821 TSA1 Sugiyamaella lignohabitans thioredoxin peroxidase TSA1 XP_018736198.1 189102 D 796027 CDS AWJ20_4666 30036822 complement(189995..193624) D 1 NC_031673.1 Integral vacuolar membrane protein; involved in vacuole inheritance and morphology; activates Fab1p kinase activity under basal conditions and also after hyperosmotic shock; GO_component: GO:0070772 - PAS complex [Evidence IDA,IPI] [PMID 19037259]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 9372916]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IDA] [PMID 9372916]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005774 - vacuolar membrane [Evidence IDA] [PMID 19037259]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0033674 - positive regulation of kinase activity [Evidence IGI] [PMID 11950935]; GO_process: GO:0010513 - positive regulation of phosphatidylinositol biosynthetic process [Evidence IGI] [PMID 11950935]; Vac7p 193624 VAC7 30036822 VAC7 Sugiyamaella lignohabitans Vac7p XP_018736199.1 189995 R 796027 CDS AWJ20_4667 30036823 195708..198686 D 1 NC_031673.1 tyrosine protein kinase SWE1 198686 SWE1 30036823 SWE1 Sugiyamaella lignohabitans tyrosine protein kinase SWE1 XP_018736200.1 195708 D 796027 CDS AWJ20_4668 30036824 198718..199479 D 1 NC_031673.1 tyrosine protein kinase SWE1 199479 SWE1 30036824 SWE1 Sugiyamaella lignohabitans tyrosine protein kinase SWE1 XP_018736201.1 198718 D 796027 CDS AWJ20_4669 30036825 202093..205500 D 1 NC_031673.1 Negative regulator of WASP-Arp23 complex; involved in endocytic site formation; directly inhibits Las17p stimulation of Arp23 complex-mediated actin assembly in vitro; may regulate assembly and disassembly of the septin ring; colocalizes and interacts with septin subunits; potential role in actin cytoskeletal organization; GO_component: GO:0005935 - cellular bud neck [Evidence IEA]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 11014808]; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 11014808]; GO_component: GO:0001400 - mating projection base [Evidence IDA] [PMID 11014808]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 19053807]; GO_component: GO:0005628 - prospore membrane [Evidence IDA] [PMID 24390141]; GO_function: GO:0004857 - enzyme inhibitor activity [Evidence IDA] [PMID 19962315]; GO_process: GO:0000147 - actin cortical patch assembly [Evidence IMP] [PMID 19776351]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0006897 - endocytosis [Evidence IEA]; GO_process: GO:0043086 - negative regulation of catalytic activity [Evidence IDA] [PMID 19962315]; GO_process: GO:0032185 - septin cytoskeleton organization [Evidence IGI,IMP,IPI] [PMID 18791237]; Syp1p 205500 SYP1 30036825 SYP1 Sugiyamaella lignohabitans Syp1p XP_018736202.1 202093 D 796027 CDS AWJ20_4670 30036827 complement(205760..206533) D 1 NC_031673.1 ribosome biosynthesis protein MAK16 206533 MAK16 30036827 MAK16 Sugiyamaella lignohabitans ribosome biosynthesis protein MAK16 XP_018736203.1 205760 R 796027 CDS AWJ20_4671 30036828 208769..211453 D 1 NC_031673.1 uncharacterized protein 211453 30036828 AWJ20_4671 Sugiyamaella lignohabitans uncharacterized protein XP_018736204.1 208769 D 796027 CDS AWJ20_4672 30036829 212643..217349 D 1 NC_031673.1 Rho GTPase activating protein (RhoGAP); involved in control of the cytoskeleton organization; targets the essential Rho-GTPase Cdc42p, which controls establishment and maintenance of cell polarity, including bud-site assembly; GO_component: GO:0005938 - cell cortex [Evidence IDA] [PMID 17914457]; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 17914457]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 17914457]; GO_component: GO:0000131 - incipient cellular bud site [Evidence IDA] [PMID 17914457]; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 17914457]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 19053807]; GO_function: GO:0005096 - GTPase activator activity [Evidence IEA]; GO_function: GO:0005100 - Rho GTPase activator activity [Evidence IDA] [PMID 12455995]; GO_function: GO:0005100 - Rho GTPase activator activity [Evidence IGI,IPI] [PMID 7498791]; GO_function: GO:0005100 - Rho GTPase activator activity [Evidence IDA] [PMID 8227021]; GO_function: GO:0005100 - Rho GTPase activator activity [Evidence IDA] [PMID 8300560]; GO_function: GO:0035091 - phosphatidylinositol binding [Evidence IEA]; GO_function: GO:0032266 - phosphatidylinositol-3-phosphate binding [Evidence IDA] [PMID 11557775]; GO_process: GO:0030010 - establishment of cell polarity [Evidence IMP] [PMID 8013906]; GO_process: GO:0035024 - negative regulation of Rho protein signal transduction [Evidence IGI,IMP,IPI] [PMID 17914457]; GO_process: GO:0043547 - positive regulation of GTPase activity [Evidence IEA]; GO_process: GO:0031106 - septin ring organization [Evidence IGI] [PMID 14517318]; GO_process: GO:0007165 - signal transduction [Evidence IEA]; Bem3p 217349 BEM3 30036829 BEM3 Sugiyamaella lignohabitans Bem3p XP_018736205.1 212643 D 796027 CDS AWJ20_4673 30036830 complement(217620..218831) D 1 NC_031673.1 Protein involved in biosynthesis of the coenzyme lipoic acid; has similarity to E. coli lipoic acid synthase; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 11914276]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA,IEA,IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0051536 - iron-sulfur cluster binding [Evidence IEA,IEA]; GO_function: GO:0016992 - lipoate synthase activity [Evidence IEA,IEA,IEA]; GO_function: GO:0016992 - lipoate synthase activity [Evidence ISA] [PMID 8349643]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016783 - sulfurtransferase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0009107 - lipoate biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0009249 - protein lipoylation [Evidence IEA]; GO_process: GO:0009249 - protein lipoylation [Evidence IMP] [PMID 19570983]; putative lipoate synthase 218831 LIP5 30036830 LIP5 Sugiyamaella lignohabitans putative lipoate synthase XP_018736206.1 217620 R 796027 CDS AWJ20_4674 30036831 218227..218514 D 1 NC_031673.1 uncharacterized protein 218514 30036831 AWJ20_4674 Sugiyamaella lignohabitans uncharacterized protein XP_018736207.1 218227 D 796027 CDS AWJ20_4675 30036832 222116..223063 D 1 NC_031673.1 Arginase, catabolizes arginine to ornithine and urea; expression responds to both induction by arginine and nitrogen catabolite repression; disruption decreases production of carcinogen ethyl carbamate during wine fermentation and also enhances freeze tolerance; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 205532]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 19053807]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0004053 - arginase activity [Evidence IEA,IEA]; GO_function: GO:0004053 - arginase activity [Evidence IMP] [PMID 14582193]; GO_function: GO:0004053 - arginase activity [Evidence IDA] [PMID 2404017]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016813 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines [Evidence IEA]; GO_function: GO:0030145 - manganese ion binding [Evidence IDA] [PMID 1939179]; GO_function: GO:0046872 - metal ion binding [Evidence IEA,IEA]; GO_function: GO:0090369 - ornithine carbamoyltransferase inhibitor activity [Evidence IDA,IMP] [PMID 12679340]; GO_function: GO:0008270 - zinc ion binding [Evidence IDA] [PMID 1939179]; GO_process: GO:0019547 - arginine catabolic process to ornithine [Evidence IMP] [PMID 14582193]; GO_process: GO:0019547 - arginine catabolic process to ornithine [Evidence IDA] [PMID 2404017]; GO_process: GO:0006525 - arginine metabolic process [Evidence IEA,IEA]; GO_process: GO:0090368 - regulation of ornithine metabolic process [Evidence IDA,IMP] [PMID 12679340]; GO_process: GO:0000050 - urea cycle [Evidence IEA]; arginase 223063 CAR1 30036832 CAR1 Sugiyamaella lignohabitans arginase XP_018736208.1 222116 D 796027 CDS AWJ20_4676 30036833 complement(225880..228504) D 1 NC_031673.1 Trichostatin A-insensitive homodimeric histone deacetylase (HDAC); specificity in vitro for histones H3, H4, H2A, and H2B; similar to Hda1p, Rpd3p, Hos1p, and Hos2p; deletion results in increased histone acetylation at rDNA repeats; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11914276]; GO_component: GO:0005628 - prospore membrane [Evidence IDA] [PMID 24390141]; GO_function: GO:0032041 - NAD-dependent histone deacetylase activity (H3-K14 specific) [Evidence IEA]; GO_function: GO:0097372 - NAD-dependent histone deacetylase activity (H3-K18 specific) [Evidence IEA]; GO_function: GO:0046969 - NAD-dependent histone deacetylase activity (H3-K9 specific) [Evidence IEA]; GO_function: GO:0046970 - NAD-dependent histone deacetylase activity (H4-K16 specific) [Evidence IEA]; GO_function: GO:0004407 - histone deacetylase activity [Evidence IDA] [PMID 10535926]; GO_function: GO:0031078 - histone deacetylase activity (H3-K14 specific) [Evidence IEA]; GO_function: GO:0032129 - histone deacetylase activity (H3-K9 specific) [Evidence IEA]; GO_function: GO:0034739 - histone deacetylase activity (H4-K16 specific) [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_process: GO:0016568 - chromatin modification [Evidence IEA]; GO_process: GO:0070932 - histone H3 deacetylation [Evidence IEA]; GO_process: GO:0070933 - histone H4 deacetylation [Evidence IEA]; GO_process: GO:0016575 - histone deacetylation [Evidence IDA] [PMID 10535926]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 17706600]; GO_process: GO:0000083 - regulation of transcription involved in G1/S transition of mitotic cell cycle [Evidence IGI,IPI] [PMID 19823668]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Hos3p 228504 HOS3 30036833 HOS3 Sugiyamaella lignohabitans Hos3p XP_018736209.1 225880 R 796027 CDS AWJ20_4677 30036834 229381..230076 D 1 NC_031673.1 uncharacterized protein 230076 30036834 AWJ20_4677 Sugiyamaella lignohabitans uncharacterized protein XP_018736210.1 229381 D 796027 CDS AWJ20_4678 30036835 complement(230292..232610) D 1 NC_031673.1 Alpha-1,2-specific exomannosidase of the endoplasmic reticulum; in complex with Pdi1p, generates a Man7GlcNac2 oligosaccharide signal on glycoproteins destined for ubiquitin-proteasome degradation; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005788 - endoplasmic reticulum lumen [Evidence IEA]; GO_component: GO:0005788 - endoplasmic reticulum lumen [Evidence IDA] [PMID 19279007]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0004559 - alpha-mannosidase activity [Evidence IEA]; GO_function: GO:0005509 - calcium ion binding [Evidence IEA]; GO_function: GO:0030246 - carbohydrate binding [Evidence IMP,ISS] [PMID 11375935]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016798 - hydrolase activity, acting on glycosyl bonds [Evidence IEA]; GO_function: GO:0004571 - mannosyl-oligosaccharide 1,2-alpha-mannosidase activity [Evidence IEA]; GO_function: GO:0004571 - mannosyl-oligosaccharide 1,2-alpha-mannosidase activity [Evidence IMP] [PMID 19124653]; GO_process: GO:0030433 - ER-associated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 11254655]; GO_process: GO:0030433 - ER-associated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 11375935]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0006986 - response to unfolded protein [Evidence IEA]; alpha-1,2-mannosidase MNL1 232610 MNL1 30036835 MNL1 Sugiyamaella lignohabitans alpha-1,2-mannosidase MNL1 XP_018736211.1 230292 R 796027 CDS AWJ20_4679 30036836 235127..235852 D 1 NC_031673.1 Protein component of the small (40S) ribosomal subunit; mutation affects 20S pre-rRNA processing; homologous to mammalian ribosomal protein S4, no bacterial homolog; RPS4A has a paralog, RPS4B, that arose from the whole genome duplication; GO_component: GO:0030686 - 90S preribosome [Evidence IDA] [PMID 12150911]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0022627 - cytosolic small ribosomal subunit [Evidence IDA] [PMID 6814480]; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA,IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA,IEA]; GO_function: GO:0019843 - rRNA binding [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IDA] [PMID 6814480]; GO_process: GO:0002181 - cytoplasmic translation [Evidence IC] [PMID 6814480]; GO_process: GO:0006412 - translation [Evidence IEA]; ribosomal 40S subunit protein S4A 235852 RPS4A 30036836 RPS4A Sugiyamaella lignohabitans ribosomal 40S subunit protein S4A XP_018736212.1 235127 D 796027 CDS AWJ20_4680 30036838 complement(236320..238320) D 1 NC_031673.1 uncharacterized protein 238320 30036838 AWJ20_4680 Sugiyamaella lignohabitans uncharacterized protein XP_018736213.1 236320 R 796027 CDS AWJ20_4681 30036839 240136..241248 D 1 NC_031673.1 Protein with a role in mitochondrial DNA recombinational repair; also involved in interstrand cross-link repair; binds to and catalyzes the annealing of single-stranded mtDNA; oligomerizes to form rings and filaments; related to Rad52-type recombination proteins, with limited overall similarity but sharing conserved functionally important residues; component of the mitochondrial nucleoid, required for the repair of oxidative mtDNA damage; GO_component: GO:0000262 - mitochondrial chromosome [Evidence IEA]; GO_component: GO:0042645 - mitochondrial nucleoid [Evidence IEA,IEA]; GO_component: GO:0042645 - mitochondrial nucleoid [Evidence IDA] [PMID 10209025]; GO_component: GO:0042645 - mitochondrial nucleoid [Evidence IDA] [PMID 10869431]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0003697 - single-stranded DNA binding [Evidence IDA,IMP] [PMID 22948312]; GO_process: GO:0006281 - DNA repair [Evidence IEA]; GO_process: GO:0006281 - DNA repair [Evidence IMP] [PMID 10209025]; GO_process: GO:0000733 - DNA strand renaturation [Evidence IDA] [PMID 22027892]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0036297 - interstrand cross-link repair [Evidence IGI] [PMID 22912599]; GO_process: GO:0000002 - mitochondrial genome maintenance [Evidence IEA]; GO_process: GO:0000725 - recombinational repair [Evidence IMP] [PMID 22027892]; Mgm101p 241248 MGM101 30036839 MGM101 Sugiyamaella lignohabitans Mgm101p XP_018736214.1 240136 D 796027 CDS AWJ20_4682 30036840 241986..243131 D 1 NC_031673.1 uncharacterized protein 243131 30036840 AWJ20_4682 Sugiyamaella lignohabitans uncharacterized protein XP_018736215.1 241986 D 796027 CDS AWJ20_4683 30036841 244559..244903 D 1 NC_031673.1 uncharacterized protein 244903 30036841 AWJ20_4683 Sugiyamaella lignohabitans uncharacterized protein XP_018736216.1 244559 D 796027 CDS AWJ20_4684 30036842 247121..247855 D 1 NC_031673.1 Cytochrome c oxidase subunit; has a role in assembly of respiratory supercomplexes; similar to Rcf1p, and either Rcf1p or Rcf2p is required for late-stage assembly of the Cox12p and Cox13p subunits and for cytochrome c oxidase activity; associates with the cytochrome c oxidase - cytochrome bc1 supercomplex; null mutant accumulates reactive oxygen species; member of the conserved hypoxia induced gene family; C. elegans homolog is functional in yeast; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0031305 - integral component of mitochondrial inner membrane [Evidence IDA] [PMID 22342701]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0031966 - mitochondrial membrane [Evidence IEA]; GO_component: GO:0097249 - mitochondrial respiratory chain supercomplex [Evidence IDA] [PMID 22310663]; GO_component: GO:0097249 - mitochondrial respiratory chain supercomplex [Evidence IDA] [PMID 22342701]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0033617 - mitochondrial respiratory chain complex IV assembly [Evidence IGI] [PMID 22310663]; Rcf2p 247855 RCF2 30036842 RCF2 Sugiyamaella lignohabitans Rcf2p XP_018736217.1 247121 D 796027 CDS AWJ20_4685 30036843 complement(248524..249822) D 1 NC_031673.1 Mitochondrial translation elongation factor Tu; comprises both GTPase and guanine nucleotide exchange factor activities, while these activities are found in separate proteins in S. pombe and humans; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0005759 - mitochondrial matrix [Evidence ISS] [PMID 6353412]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0005525 - GTP binding [Evidence IEA,IEA]; GO_function: GO:0003924 - GTPase activity [Evidence IEA]; GO_function: GO:0003924 - GTPase activity [Evidence IGI] [PMID 15695360]; GO_function: GO:0003924 - GTPase activity [Evidence IDA] [PMID 3301847]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0003746 - translation elongation factor activity [Evidence IEA,IEA]; GO_function: GO:0003746 - translation elongation factor activity [Evidence IGI] [PMID 15695360]; GO_function: GO:0003746 - translation elongation factor activity [Evidence IDA] [PMID 3301847]; GO_function: GO:0003746 - translation elongation factor activity [Evidence ISS] [PMID 6353412]; GO_process: GO:0006184 - GTP catabolic process [Evidence IEA]; GO_process: GO:0032543 - mitochondrial translation [Evidence IGI] [PMID 15695360]; GO_process: GO:0032543 - mitochondrial translation [Evidence IGI] [PMID 16777356]; GO_process: GO:0070125 - mitochondrial translational elongation [Evidence ISA] [PMID 3905388]; GO_process: GO:0006412 - translation [Evidence IEA]; GO_process: GO:0006414 - translational elongation [Evidence IEA,IEA,IEA]; translation elongation factor Tu 249822 TUF1 30036843 TUF1 Sugiyamaella lignohabitans translation elongation factor Tu XP_018736218.1 248524 R 796027 CDS AWJ20_4686 30036844 256171..257940 D 1 NC_031673.1 Vacuolar carboxypeptidase Y (proteinase C, CPY); broad-specificity C-terminal exopeptidase involved in non-specific protein degradation in the vacuole; member of the serine carboxypeptidase family; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 11914276]; GO_component: GO:0000324 - fungal-type vacuole [Evidence IDA] [PMID 14562095]; GO_component: GO:0000324 - fungal-type vacuole [Evidence IDA] [PMID 23708375]; GO_component: GO:0005773 - vacuole [Evidence IEA,IEA,IEA]; GO_function: GO:0004180 - carboxypeptidase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_function: GO:0004185 - serine-type carboxypeptidase activity [Evidence IEA]; GO_function: GO:0004185 - serine-type carboxypeptidase activity [Evidence IDA,IMP] [PMID 8679540]; GO_process: GO:0046938 - phytochelatin biosynthetic process [Evidence IDA,IMP] [PMID 17408619]; GO_process: GO:0006508 - proteolysis [Evidence IEA,IEA]; GO_process: GO:0007039 - vacuolar protein catabolic process [Evidence TAS] [PMID 8789256]; carboxypeptidase C PRC1 257940 PRC1 30036844 PRC1 Sugiyamaella lignohabitans carboxypeptidase C PRC1 XP_018736219.1 256171 D 796027 CDS AWJ20_4687 30036845 complement(258967..259344) D 1 NC_031673.1 uncharacterized protein 259344 30036845 AWJ20_4687 Sugiyamaella lignohabitans uncharacterized protein XP_018736220.1 258967 R 796027 CDS AWJ20_4688 30036846 complement(262449..264314) D 1 NC_031673.1 Regulatory subunit A of the heterotrimeric PP2A complex; the heterotrimeric protein phosphatase 2A (PP2A) complex also contains regulatory subunit Cdc55p and either catalytic subunit Pph21p or Pph22p; required for cell morphogenesis and transcription by RNA polymerase III; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 12388751]; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 12388751]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 12388751]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 12388751]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 12388751]; GO_component: GO:0000159 - protein phosphatase type 2A complex [Evidence IDA] [PMID 17550305]; GO_component: GO:0005816 - spindle pole body [Evidence IDA] [PMID 12388751]; GO_function: GO:0004722 - protein serine/threonine phosphatase activity [Evidence IDA,IMP] [PMID 17550305]; GO_process: GO:0007094 - mitotic spindle assembly checkpoint [Evidence IMP] [PMID 9001215]; GO_process: GO:0006417 - regulation of translation [Evidence IMP] [PMID 10329624]; protein phosphatase 2A structural subunit TPD3 264314 TPD3 30036846 TPD3 Sugiyamaella lignohabitans protein phosphatase 2A structural subunit TPD3 XP_018736221.1 262449 R 796027 CDS AWJ20_4689 30036847 267515..268207 D 1 NC_031673.1 NADH dehydrogenase (ubiquinone) Fe-S protein 8 268207 NUO1 30036847 NUO1 Sugiyamaella lignohabitans NADH dehydrogenase (ubiquinone) Fe-S protein 8 XP_018736222.1 267515 D 796027 CDS AWJ20_4690 30036849 complement(join(275781..276779,276898..276900)) D 1 NC_031673.1 uncharacterized protein 276900 30036849 AWJ20_4690 Sugiyamaella lignohabitans uncharacterized protein XP_018736223.1 275781 R 796027 CDS AWJ20_4691 30036850 complement(278236..279282) D 1 NC_031673.1 uncharacterized protein 279282 30036850 AWJ20_4691 Sugiyamaella lignohabitans uncharacterized protein XP_018736224.1 278236 R 796027 CDS AWJ20_4692 30036851 complement(280105..280569) D 1 NC_031673.1 uncharacterized protein 280569 30036851 AWJ20_4692 Sugiyamaella lignohabitans uncharacterized protein XP_018736225.1 280105 R 796027 CDS AWJ20_4693 30036852 complement(281151..281639) D 1 NC_031673.1 uncharacterized protein 281639 30036852 AWJ20_4693 Sugiyamaella lignohabitans uncharacterized protein XP_018736226.1 281151 R 796027 CDS AWJ20_4694 30036853 complement(284118..285305) D 1 NC_031673.1 Mitochondrial protein of the mitochondrial carrier family; high affinity pyridoxal 5'-phosphate transporter; involved in mitochondrial iron homeostasis and in activating mitochondrial Sod2p by facilitating insertion of an essential manganese cofactor; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 12890866]; GO_function: GO:0016530 - metallochaperone activity [Evidence IMP] [PMID 12890866]; GO_function: GO:0030170 - pyridoxal phosphate binding [Evidence IDA] [PMID 24184947]; GO_process: GO:0006828 - manganese ion transport [Evidence IMP] [PMID 12890866]; GO_process: GO:0006810 - transport [Evidence IEA]; Mtm1p 285305 MTM1 30036853 MTM1 Sugiyamaella lignohabitans Mtm1p XP_018736227.1 284118 R 796027 CDS AWJ20_4695 30036854 287332..291078 D 1 NC_031673.1 Subunit of TORC1; TORC1 is a rapamycin-sensitive complex involved in growth control that contains Tor1p or Tor2p, Lst8p and Tco89p; contains four HEAT repeats and seven WD-40 repeats; may act as a scaffold protein to couple TOR and its effectors; GO_component: GO:0031931 - TORC1 complex [Evidence IEA]; GO_component: GO:0031931 - TORC1 complex [Evidence IPI] [PMID 12408816]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 14562095]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 16394584]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 17560372]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 16394584]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0043130 - ubiquitin binding [Evidence IDA] [PMID 21070969]; GO_process: GO:0031929 - TOR signaling [Evidence IEA]; GO_process: GO:0031929 - TOR signaling [Evidence IC] [PMID 12408816]; GO_process: GO:0009267 - cellular response to starvation [Evidence IMP] [PMID 12408816]; GO_process: GO:0001558 - regulation of cell growth [Evidence IPI] [PMID 12408816]; Kog1p 291078 KOG1 30036854 KOG1 Sugiyamaella lignohabitans Kog1p XP_018736228.1 287332 D 796027 CDS AWJ20_4696 30036855 complement(291263..292501) D 1 NC_031673.1 Component of the GSE complex; GSE is required for proper sorting of amino acid permease Gap1p; required for ribosomal small subunit export from nucleus; required for growth at low temperature; GO_component: GO:0034448 - EGO complex [Evidence IDA] [PMID 16732272]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 16888326]; GO_component: GO:0031902 - late endosome membrane [Evidence IDA] [PMID 16732272]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 16888326]; GO_component: GO:0030688 - preribosome, small subunit precursor [Evidence IDA] [PMID 16738661]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0034599 - cellular response to oxidative stress [Evidence IMP] [PMID 15611164]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006970 - response to osmotic stress [Evidence IMP] [PMID 15611164]; GO_process: GO:0042274 - ribosomal small subunit biogenesis [Evidence IMP] [PMID 15611164]; GO_process: GO:0000056 - ribosomal small subunit export from nucleus [Evidence IGI,IMP] [PMID 16888326]; GO_process: GO:0006810 - transport [Evidence IEA]; Ltv1p 292501 LTV1 30036855 LTV1 Sugiyamaella lignohabitans Ltv1p XP_018736229.1 291263 R 796027 CDS AWJ20_4697 30036856 complement(292889..295288) D 1 NC_031673.1 Vacuolar transporter; exports large neutral amino acids from the vacuole; member of a family of seven S. cerevisiae genes (AVT1-7) related to vesicular GABA-glycine transporters; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IMP] [PMID 11274162]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0015186 - L-glutamine transmembrane transporter activity [Evidence IGI,IMP] [PMID 11274162]; GO_function: GO:0015188 - L-isoleucine transmembrane transporter activity [Evidence IGI,IMP] [PMID 11274162]; GO_function: GO:0005302 - L-tyrosine transmembrane transporter activity [Evidence IGI,IMP] [PMID 11274162]; GO_function: GO:0005215 - transporter activity [Evidence ISS] [PMID 11274162]; GO_process: GO:0032974 - amino acid transmembrane export from vacuole [Evidence IGI,IMP] [PMID 11274162]; GO_process: GO:0006865 - amino acid transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Avt3p 295288 AVT3 30036856 AVT3 Sugiyamaella lignohabitans Avt3p XP_018736230.1 292889 R 796027 CDS AWJ20_4698 30036857 complement(296807..297172) D 1 NC_031673.1 RNA polymerase III subunit C25; required for transcription initiation; forms a heterodimer with Rpc17p; paralog of Rpb7p; GO_component: GO:0005666 - DNA-directed RNA polymerase III complex [Evidence IDA] [PMID 10611227]; GO_component: GO:0005666 - DNA-directed RNA polymerase III complex [Evidence IDA] [PMID 3905793]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0003899 - DNA-directed RNA polymerase activity [Evidence IEA,IEA]; GO_function: GO:0001056 - RNA polymerase III activity [Evidence IDA] [PMID 3905793]; GO_process: GO:0042797 - tRNA transcription from RNA polymerase III promoter [Evidence IMP] [PMID 15612920]; GO_process: GO:0042797 - tRNA transcription from RNA polymerase III promoter [Evidence IDA] [PMID 3905793]; GO_process: GO:0042797 - tRNA transcription from RNA polymerase III promoter [Evidence IMP] [PMID 8065349]; GO_process: GO:0006384 - transcription initiation from RNA polymerase III promoter [Evidence IMP] [PMID 15612920]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; DNA-directed RNA polymerase III subunit RPC25 297172 RPC25 30036857 RPC25 Sugiyamaella lignohabitans DNA-directed RNA polymerase III subunit RPC25 XP_018736231.1 296807 R 796027 CDS AWJ20_4699 30036858 299330..301162 D 1 NC_031673.1 Flavoprotein subunit of succinate dehydrogenase; couples the oxidation of succinate to the transfer of electrons to ubiquinone as part of the TCA cycle and the mitochondrial respiratory chain; FAD binding to Sdh1p is required for the assembly of the succinate dehydrogenase subunits; SDH1 has a paralog, YJL045W, that arose from the whole genome duplication; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0031966 - mitochondrial membrane [Evidence IDA] [PMID 1939170]; GO_component: GO:0005749 - mitochondrial respiratory chain complex II [Evidence IDA] [PMID 9822678]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 2826438]; GO_function: GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO_function: GO:0050660 - flavin adenine dinucleotide binding [Evidence IDA] [PMID 18279395]; GO_function: GO:0050660 - flavin adenine dinucleotide binding [Evidence IMP] [PMID 1939170]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0016627 - oxidoreductase activity, acting on the CH-CH group of donors [Evidence IEA]; GO_function: GO:0008177 - succinate dehydrogenase (ubiquinone) activity [Evidence IEA]; GO_function: GO:0008177 - succinate dehydrogenase (ubiquinone) activity [Evidence IDA] [PMID 13445213]; GO_function: GO:0008177 - succinate dehydrogenase (ubiquinone) activity [Evidence IGI,IMP] [PMID 16232921]; GO_function: GO:0008177 - succinate dehydrogenase (ubiquinone) activity [Evidence IMP] [PMID 197391]; GO_function: GO:0008177 - succinate dehydrogenase (ubiquinone) activity [Evidence IMP] [PMID 9730279]; GO_process: GO:0045333 - cellular respiration [Evidence IGI,IMP] [PMID 16232921]; GO_process: GO:0045333 - cellular respiration [Evidence IGI,IMP] [PMID 9730279]; GO_process: GO:0022900 - electron transport chain [Evidence IEA]; GO_process: GO:0006121 - mitochondrial electron transport, succinate to ubiquinone [Evidence IDA] [PMID 2826438]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0006099 - tricarboxylic acid cycle [Evidence IEA,IEA,IEA]; GO_process: GO:0006099 - tricarboxylic acid cycle [Evidence IC] [PMID 13445213]; succinate dehydrogenase flavoprotein subunit SDH1 301162 SDH1 30036858 SDH1 Sugiyamaella lignohabitans succinate dehydrogenase flavoprotein subunit SDH1 XP_018736232.1 299330 D 796027 CDS AWJ20_4700 30036861 301515..302012 D 1 NC_031673.1 Subunit of the GINS complex (Sld5p, Psf1p, Psf2p, Psf3p); complex is localized to DNA replication origins and implicated in assembly of the DNA replication machinery; GO_component: GO:0031261 - DNA replication preinitiation complex [Evidence IGI,IMP] [PMID 12730134]; GO_component: GO:0000811 - GINS complex [Evidence IPI] [PMID 12730134]; GO_component: GO:0000811 - GINS complex [Evidence IPI] [PMID 12768207]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0031298 - replication fork protection complex [Evidence IDA] [PMID 16531994]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006260 - DNA replication [Evidence IEA]; GO_process: GO:0006261 - DNA-dependent DNA replication [Evidence IMP] [PMID 12730134]; GO_process: GO:0006261 - DNA-dependent DNA replication [Evidence IMP] [PMID 12768207]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0000727 - double-strand break repair via break-induced replication [Evidence IMP] [PMID 20516198]; Psf1p 302012 PSF1 30036861 PSF1 Sugiyamaella lignohabitans Psf1p XP_018736233.1 301515 D 796027 CDS AWJ20_4701 30036862 303013..304329 D 1 NC_031673.1 ATPase of the 19S regulatory particle of the 26S proteasome; one of six ATPases of the regulatory particle; involved in the degradation of ubiquitinated substrates; required for optimal CDC20 transcription; interacts with Rpn12p and Ubr1p; mutant has aneuploidy tolerance; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0000502 - proteasome complex [Evidence IEA]; GO_component: GO:0008540 - proteasome regulatory particle, base subcomplex [Evidence IDA] [PMID 9741626]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016887 - ATPase activity [Evidence ISS] [PMID 7754704]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_process: GO:0045899 - positive regulation of RNA polymerase II transcriptional preinitiation complex assembly [Evidence IMP] [PMID 19843524]; GO_process: GO:0045732 - positive regulation of protein catabolic process [Evidence IDA] [PMID 15135049]; GO_process: GO:0070682 - proteasome regulatory particle assembly [Evidence IMP] [PMID 19412160]; GO_process: GO:0030163 - protein catabolic process [Evidence IEA]; GO_process: GO:0006511 - ubiquitin-dependent protein catabolic process [Evidence IPI] [PMID 15135049]; proteasome regulatory particle base subunit RPT1 304329 RPT1 30036862 RPT1 Sugiyamaella lignohabitans proteasome regulatory particle base subunit RPT1 XP_018736234.1 303013 D 796027 CDS AWJ20_4703 30036864 complement(304987..306528) D 1 NC_031673.1 RNA lariat debranching enzyme; catalyzes debranching of lariat introns formed during pre-mRNA splicing; required for efficient Ty1 transposition; knockdown of human homolog Dbr1 rescues toxicity of RNA-binding proteins TDP-43 and FUS which are implicated in amyotrophic lateral sclerosis (ALS), suggests potential therapeutic target for ALS and related TDP-43 proteinopathies; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IC] [PMID 1850323]; GO_function: GO:0008419 - RNA lariat debranching enzyme activity [Evidence IDA,IMP] [PMID 1850323]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA,IEA]; GO_function: GO:0016788 - hydrolase activity, acting on ester bonds [Evidence IEA]; GO_process: GO:0006401 - RNA catabolic process [Evidence IDA,IMP] [PMID 1850323]; GO_process: GO:0006397 - mRNA processing [Evidence IEA,IEA]; GO_process: GO:0000398 - mRNA splicing, via spliceosome [Evidence IMP] [PMID 24919400]; GO_process: GO:0007124 - pseudohyphal growth [Evidence IMP] [PMID 9055077]; GO_process: GO:0016074 - snoRNA metabolic process [Evidence IMP] [PMID 9740128]; GO_process: GO:0032197 - transposition, RNA-mediated [Evidence IMP] [PMID 10652222]; Dbr1p 306528 DBR1 30036864 DBR1 Sugiyamaella lignohabitans Dbr1p XP_018736235.1 304987 R 796027 CDS AWJ20_4704 30036865 307101..308591 D 1 NC_031673.1 Essential protein that is a component of 90S preribosomes; may be involved in rRNA processing; multicopy suppressor of sensitivity to Brefeldin A; expression is induced during lag phase and also by cold shock; GO_component: GO:0030686 - 90S preribosome [Evidence IDA] [PMID 12150911]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 15590835]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006364 - rRNA processing [Evidence IMP] [PMID 15590835]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IEA]; Bfr2p 308591 BFR2 30036865 BFR2 Sugiyamaella lignohabitans Bfr2p XP_018736236.1 307101 D 796027 CDS AWJ20_4705 30036866 complement(311296..311814) D 1 NC_031673.1 Mitochondrial NADH-cytochrome b5 reductase; involved in ergosterol biosynthesis; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0031307 - integral component of mitochondrial outer membrane [Evidence IDA] [PMID 16689936]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IEA]; GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IDA] [PMID 8001120]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IEA,IEA]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IDA] [PMID 16407407]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IDA] [PMID 8001120]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0004128 - cytochrome-b5 reductase activity, acting on NAD(P)H [Evidence IEA]; GO_function: GO:0004128 - cytochrome-b5 reductase activity, acting on NAD(P)H [Evidence IDA] [PMID 8001120]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_process: GO:0034599 - cellular response to oxidative stress [Evidence IMP] [PMID 11420140]; GO_process: GO:0006696 - ergosterol biosynthetic process [Evidence IDA] [PMID 10622712]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; Mcr1p 311814 MCR1 30036866 MCR1 Sugiyamaella lignohabitans Mcr1p XP_018736237.1 311296 R 796027 CDS AWJ20_4706 30036867 314138..314962 D 1 NC_031673.1 NADHX dehydratase; converts (S)-NADHX to NADH in an ATP-dependent manner; homologous to Carkd in mammals, and the C-terminal domain of YjeF in E.coli; enzyme is widespread in eukaryotes, prokaryotes and archaea; YKL151C promoter contains STREs (stress response elements) and expression is induced by heat shock or methyl methanesulfonate; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0047453 - ATP-dependent NAD(P)H-hydrate dehydratase activity [Evidence IEA,IEA]; GO_function: GO:0047453 - ATP-dependent NAD(P)H-hydrate dehydratase activity [Evidence IDA] [PMID 21994945]; GO_function: GO:0016829 - lyase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0046496 - nicotinamide nucleotide metabolic process [Evidence IEA]; GO_process: GO:0046496 - nicotinamide nucleotide metabolic process [Evidence IDA] [PMID 21994945]; NADHX dehydratase 314962 30036867 AWJ20_4706 Sugiyamaella lignohabitans NADHX dehydratase XP_018736238.1 314138 D 796027 CDS AWJ20_4707 30036868 complement(315195..315932) D 1 NC_031673.1 uncharacterized protein 315932 30036868 AWJ20_4707 Sugiyamaella lignohabitans uncharacterized protein XP_018736239.1 315195 R 796027 CDS AWJ20_4708 30036869 complement(316979..317716) D 1 NC_031673.1 Basic helix-loop-helix (bHLH) protein; forms homodimer to bind E-box consensus sequence CACGTG present at MET gene promoters and centromere DNA element I (CDEI); affects nucleosome positioning at this motif; associates with other transcription factors such as Met4p and Isw1p to mediate transcriptional activation or repression; associates with kinetochore proteins, required for chromosome segregation; protein abundance increases in response to DNA replication stress; GO_component: GO:0005694 - chromosome [Evidence IEA]; GO_component: GO:0000775 - chromosome, centromeric region [Evidence IEA,IEA]; GO_component: GO:0000775 - chromosome, centromeric region [Evidence IDA] [PMID 9407032]; GO_component: GO:0000776 - kinetochore [Evidence IPI] [PMID 11070082]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11914276]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0001102 - RNA polymerase II activating transcription factor binding [Evidence IMP] [PMID 20935143]; GO_function: GO:0001102 - RNA polymerase II activating transcription factor binding [Evidence IPI] [PMID 8665859]; GO_function: GO:0000978 - RNA polymerase II core promoter proximal region sequence-specific DNA binding [Evidence IDA] [PMID 7891681]; GO_function: GO:0000978 - RNA polymerase II core promoter proximal region sequence-specific DNA binding [Evidence IDA] [PMID 9894911]; GO_function: GO:0001078 - RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription [Evidence IDA] [PMID 15302821]; GO_function: GO:0001077 - RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription [Evidence IDA] [PMID 7891681]; GO_function: GO:0001103 - RNA polymerase II repressing transcription factor binding [Evidence IDA] [PMID 12820973]; GO_function: GO:0001076 - RNA polymerase II transcription factor binding transcription factor activity [Evidence IMP] [PMID 12820973]; GO_function: GO:0001076 - RNA polymerase II transcription factor binding transcription factor activity [Evidence IMP] [PMID 20935143]; GO_function: GO:0019237 - centromeric DNA binding [Evidence IDA] [PMID 11222754]; GO_function: GO:0019237 - centromeric DNA binding [Evidence IDA] [PMID 2057354]; GO_function: GO:0019237 - centromeric DNA binding [Evidence IDA] [PMID 2249662]; GO_function: GO:0019237 - centromeric DNA binding [Evidence IDA] [PMID 9407032]; GO_function: GO:0046983 - protein dimerization activity [Evidence IEA]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19111667]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19158363]; GO_process: GO:0006338 - chromatin remodeling [Evidence IDA] [PMID 15111622]; GO_process: GO:0006338 - chromatin remodeling [Evidence IMP] [PMID 21131275]; GO_process: GO:0006338 - chromatin remodeling [Evidence IMP] [PMID 2249662]; GO_process: GO:0006338 - chromatin remodeling [Evidence IMP] [PMID 7891681]; GO_process: GO:0007059 - chromosome segregation [Evidence IMP] [PMID 2057354]; GO_process: GO:0007059 - chromosome segregation [Evidence IMP] [PMID 2185892]; GO_process: GO:0007059 - chromosome segregation [Evidence IMP] [PMID 2188087]; GO_process: GO:0007059 - chromosome segregation [Evidence IGI] [PMID 9584087]; GO_process: GO:0061427 - negative regulation of ceramide biosynthetic process by negative regulation of transcription from RNA Polymerase II promoter [Evidence IMP] [PMID 15302821]; GO_process: GO:0000122 - negative regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 10921921]; GO_process: GO:0000122 - negative regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 22696683]; GO_process: GO:1900375 - positive regulation of inositol biosynthetic process by positive regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 17351075]; GO_process: GO:1900375 - positive regulation of inositol biosynthetic process by positive regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 20935143]; GO_process: GO:1900478 - positive regulation of sulfate assimilation by positive regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 7601277]; GO_process: GO:1900478 - positive regulation of sulfate assimilation by positive regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 7891681]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 22696683]; GO_process: GO:0061432 - regulation of transcription from RNA polymerase II promoter in response to methionine [Evidence IMP] [PMID 7891681]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Cbf1p 317716 CBF1 30036869 CBF1 Sugiyamaella lignohabitans Cbf1p XP_018736240.1 316979 R 796027 CDS AWJ20_4710 30036872 complement(319055..321037) D 1 NC_031673.1 Subunit of the condensin complex; required for chromosome condensation and for clustering of tRNA genes at the nucleolus; may influence multiple aspects of chromosome transmission; GO_component: GO:0005694 - chromosome [Evidence IEA,IEA]; GO_component: GO:0000796 - condensin complex [Evidence IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0000799 - nuclear condensin complex [Evidence IPI,ISS] [PMID 10749931]; GO_component: GO:0000799 - nuclear condensin complex [Evidence IDA] [PMID 10811823]; GO_component: GO:0000799 - nuclear condensin complex [Evidence IPI,ISS] [PMID 7698648]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 10749931]; GO_function: GO:0003682 - chromatin binding [Evidence IGI] [PMID 11864994]; GO_process: GO:0006268 - DNA unwinding involved in DNA replication [Evidence IMP] [PMID 24062159]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0030261 - chromosome condensation [Evidence IEA]; GO_process: GO:0007076 - mitotic chromosome condensation [Evidence IEA]; GO_process: GO:0007076 - mitotic chromosome condensation [Evidence IGI,IMP] [PMID 10749931]; GO_process: GO:0007076 - mitotic chromosome condensation [Evidence IMP] [PMID 10811823]; GO_process: GO:0007076 - mitotic chromosome condensation [Evidence IMP] [PMID 7698648]; GO_process: GO:0007067 - mitotic nuclear division [Evidence IEA]; GO_process: GO:0000070 - mitotic sister chromatid segregation [Evidence IMP] [PMID 10749931]; GO_process: GO:0070058 - tRNA gene clustering [Evidence IMP] [PMID 18708579]; Brn1p 321037 BRN1 30036872 BRN1 Sugiyamaella lignohabitans Brn1p XP_018736241.1 319055 R 796027 CDS AWJ20_4711 30036873 321891..323192 D 1 NC_031673.1 mRNA (N6-adenosine)-methyltransferase 323192 IME4 30036873 IME4 Sugiyamaella lignohabitans mRNA (N6-adenosine)-methyltransferase XP_018736242.1 321891 D 796027 CDS AWJ20_4712 30036874 324452..327079 D 1 NC_031673.1 Ubiquitin-protein ligase; forms a complex with Elc1p that polyubiquitylates monoubiquitylated RNA polymerase II to trigger its proteolysis; cullin family member with similarity to Cdc53p and human CUL3; GO_component: GO:0031463 - Cul3-RING ubiquitin ligase complex [Evidence IDA] [PMID 16675952]; GO_component: GO:0031463 - Cul3-RING ubiquitin ligase complex [Evidence IMP] [PMID 17296727]; GO_component: GO:0031461 - cullin-RING ubiquitin ligase complex [Evidence IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0031625 - ubiquitin protein ligase binding [Evidence IEA]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence IDA] [PMID 12676951]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence IDA] [PMID 16675952]; GO_process: GO:0016567 - protein ubiquitination [Evidence IEA]; GO_process: GO:0042787 - protein ubiquitination involved in ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 17296727]; GO_process: GO:0006511 - ubiquitin-dependent protein catabolic process [Evidence IEA]; GO_process: GO:0006511 - ubiquitin-dependent protein catabolic process [Evidence IC] [PMID 12676951]; GO_process: GO:0006511 - ubiquitin-dependent protein catabolic process [Evidence ISS] [PMID 9531531]; cullin CUL3 327079 CUL3 30036874 CUL3 Sugiyamaella lignohabitans cullin CUL3 XP_018736243.1 324452 D 796027 CDS AWJ20_4713 30036875 complement(327291..328283) D 1 NC_031673.1 uncharacterized protein 328283 30036875 AWJ20_4713 Sugiyamaella lignohabitans uncharacterized protein XP_018736244.1 327291 R 796027 CDS AWJ20_4714 30036876 complement(330502..330918) D 1 NC_031673.1 Ribosomal protein 51 (rp51) of the small (40s) subunit; homologous to mammalian ribosomal protein S17, no bacterial homolog; RPS17B has a paralog, RPS17A, that arose from the whole genome duplication; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0022627 - cytosolic small ribosomal subunit [Evidence IBA]; GO_component: GO:0022627 - cytosolic small ribosomal subunit [Evidence NAS] [PMID 9559554]; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA,IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence NAS] [PMID 9559554]; GO_process: GO:0002181 - cytoplasmic translation [Evidence NAS] [PMID 9559554]; GO_process: GO:0000028 - ribosomal small subunit assembly [Evidence IMP] [PMID 3915776]; GO_process: GO:0006412 - translation [Evidence IEA]; GO_process: GO:0006414 - translational elongation [Evidence IBA]; ribosomal 40S subunit protein S17B 330918 RPS17B 30036876 RPS17B Sugiyamaella lignohabitans ribosomal 40S subunit protein S17B XP_018736245.1 330502 R 796027 CDS AWJ20_4715 30036877 332839..334332 D 1 NC_031673.1 chromatin-binding transcription regulator ADA2 334332 ADA2 30036877 ADA2 Sugiyamaella lignohabitans chromatin-binding transcription regulator ADA2 XP_018736246.1 332839 D 796027 CDS AWJ20_4716 30036878 complement(334548..335276) D 1 NC_031673.1 uncharacterized protein 335276 30036878 AWJ20_4716 Sugiyamaella lignohabitans uncharacterized protein XP_018736247.1 334548 R 796027 CDS AWJ20_4717 30036879 complement(337729..338937) D 1 NC_031673.1 Nucleolar protein; component of the small subunit (SSU) processome containing the U3 snoRNA that is involved in processing of pre-18S rRNA; GO_component: GO:0030686 - 90S preribosome [Evidence IDA] [PMID 12150911]; GO_component: GO:0034388 - Pwp2p-containing subcomplex of 90S preribosome [Evidence IDA] [PMID 15231838]; GO_component: GO:0034388 - Pwp2p-containing subcomplex of 90S preribosome [Evidence IDA] [PMID 17515605]; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 12068309]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 12150911]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0032040 - small-subunit processome [Evidence IDA] [PMID 12068309]; GO_function: GO:0030515 - snoRNA binding [Evidence IPI] [PMID 12068309]; GO_process: GO:0006396 - RNA processing [Evidence IEA]; GO_process: GO:0000480 - endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 15489292]; GO_process: GO:0000447 - endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 15489292]; GO_process: GO:0000472 - endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 15489292]; GO_process: GO:0000462 - maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 12068309]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; Utp6p 338937 UTP6 30036879 UTP6 Sugiyamaella lignohabitans Utp6p XP_018736248.1 337729 R 796027 CDS AWJ20_4718 30036880 339974..341797 D 1 NC_031673.1 Putative paralog of ATR1; but not required for boron tolerance; member of the DHA2 family of drug:H+ antiporters; YOR378W is not an essential gene; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Amf1p 341797 AMF1 30036880 AMF1 Sugiyamaella lignohabitans Amf1p XP_018736249.1 339974 D 796027 CDS AWJ20_4719 30036881 complement(join(343594..345933,346144..346173)) D 1 NC_031673.1 serine/threonine protein kinase YPK1 346173 YPK1 30036881 YPK1 Sugiyamaella lignohabitans serine/threonine protein kinase YPK1 XP_018736250.1 343594 R 796027 CDS AWJ20_4720 30036883 352921..356430 D 1 NC_031673.1 protein kinase HSL1 356430 HSL1 30036883 HSL1 Sugiyamaella lignohabitans protein kinase HSL1 XP_018736251.1 352921 D 796027 CDS AWJ20_4721 30036884 356877..358460 D 1 NC_031673.1 Mitochondrial ribosomal component of the small subunit; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0005763 - mitochondrial small ribosomal subunit [Evidence IPI] [PMID 11278769]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA,IEA]; GO_function: GO:0019843 - rRNA binding [Evidence IEA,IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IPI] [PMID 11278769]; GO_process: GO:0032543 - mitochondrial translation [Evidence IC] [PMID 11278769]; mitochondrial 37S ribosomal protein NAM9 358460 NAM9 30036884 NAM9 Sugiyamaella lignohabitans mitochondrial 37S ribosomal protein NAM9 XP_018736252.1 356877 D 796027 CDS AWJ20_4722 30036885 complement(join(358683..360369,360614..360675)) D 1 NC_031673.1 CAP (cyclase-associated protein); N-terminus binds adenylate cyclase and facilitates activation by RAS; N-terminus forms novel hexameric star-shaped shuriken structures that directly catalyze cofilin-mediated severing of actin filaments; C-terminus, in physically and genetically separate activity, binds and recycles cofilin bound, ADP-actin monomers, facilitating regulation of actin dynamics and cell morphogenesis; GO_component: GO:0030479 - actin cortical patch [Evidence IEA]; GO_component: GO:0030479 - actin cortical patch [Evidence IDA] [PMID 8552082]; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 19053807]; GO_function: GO:0003779 - actin binding [Evidence IEA,IEA]; GO_function: GO:0003779 - actin binding [Evidence IDA] [PMID 19201756]; GO_function: GO:0008179 - adenylate cyclase binding [Evidence IDA] [PMID 2184942]; GO_process: GO:0007265 - Ras protein signal transduction [Evidence IMP] [PMID 9774417]; GO_process: GO:0030036 - actin cytoskeleton organization [Evidence IEA]; GO_process: GO:0007015 - actin filament organization [Evidence IDA,IMP] [PMID 19201756]; GO_process: GO:0051014 - actin filament severing [Evidence IDA] [PMID 23135996]; GO_process: GO:0000902 - cell morphogenesis [Evidence IEA]; GO_process: GO:0007010 - cytoskeleton organization [Evidence IEA]; Srv2p 360675 SRV2 30036885 SRV2 Sugiyamaella lignohabitans Srv2p XP_018736253.1 358683 R 796027 CDS AWJ20_4723 30036886 361197..363431 D 1 NC_031673.1 Nuclear actin-related protein involved in chromatin remodeling; component of chromatin-remodeling enzyme complexes; promotes nucleosome shifts in the 3 prime direction; GO_component: GO:0031011 - Ino80 complex [Evidence IEA]; GO_component: GO:0031011 - Ino80 complex [Evidence IDA,IMP] [PMID 12887900]; GO_component: GO:0031011 - Ino80 complex [Evidence IDA] [PMID 15525518]; GO_component: GO:0031011 - Ino80 complex [Evidence IPI] [PMID 24034245]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 10923024]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11011149]; GO_function: GO:0043140 - ATP-dependent 3'-5' DNA helicase activity [Evidence IDA] [PMID 10952318]; GO_process: GO:0006281 - DNA repair [Evidence IEA]; GO_process: GO:0006338 - chromatin remodeling [Evidence IMP] [PMID 12887900]; GO_process: GO:0006338 - chromatin remodeling [Evidence IPI] [PMID 15525518]; GO_process: GO:0042766 - nucleosome mobilization [Evidence IDA] [PMID 12887900]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA,IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Arp5p 363431 ARP5 30036886 ARP5 Sugiyamaella lignohabitans Arp5p XP_018736254.1 361197 D 796027 CDS AWJ20_4725 30036888 complement(364114..365994) D 1 NC_031673.1 S-adenosyl-L-methionine-dependent tRNA: m5C-methyltransferase; methylates cytosine to m5C at several positions in tRNAs and intron-containing pre-tRNAs; increases proportion of tRNALeu(CAA) with m5C at wobble position in response to hydrogen peroxide, causing selective translation of mRNA from genes enriched in TTG codon; loss of NCL1 confers hypersensitivity to oxidative stress; similar to Nop2p and human proliferation associated nucleolar protein p120; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9767141]; GO_function: GO:0003723 - RNA binding [Evidence IEA,IEA]; GO_function: GO:0008168 - methyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0016428 - tRNA (cytosine-5-)-methyltransferase activity [Evidence IEA]; GO_function: GO:0016428 - tRNA (cytosine-5-)-methyltransferase activity [Evidence IDA] [PMID 10445884]; GO_function: GO:0000049 - tRNA binding [Evidence IEA]; GO_function: GO:0000049 - tRNA binding [Evidence IDA] [PMID 17567576]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0070301 - cellular response to hydrogen peroxide [Evidence IMP] [PMID 22760636]; GO_process: GO:0032259 - methylation [Evidence IEA]; GO_process: GO:0030488 - tRNA methylation [Evidence IDA] [PMID 10445884]; GO_process: GO:0008033 - tRNA processing [Evidence IEA]; GO_process: GO:0002127 - wobble base cytosine methylation [Evidence IMP] [PMID 22760636]; Ncl1p 365994 NCL1 30036888 NCL1 Sugiyamaella lignohabitans Ncl1p XP_018736255.1 364114 R 796027 CDS AWJ20_4726 30036889 366366..367721 D 1 NC_031673.1 Subunit of tRNA (1-methyladenosine) methyltransferase with Gcd14p; required for the modification of the adenine at position 58 in tRNAs, especially tRNAi-Met; first identified as a negative regulator of GCN4 expression; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9851972]; GO_component: GO:0031515 - tRNA (m1A) methyltransferase complex [Evidence IDA,IPI] [PMID 10779558]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0016429 - tRNA (adenine-N1-)-methyltransferase activity [Evidence IDA] [PMID 10779558]; GO_function: GO:0003743 - translation initiation factor activity [Evidence IEA]; GO_process: GO:0006446 - regulation of translational initiation [Evidence IEA]; GO_process: GO:0030488 - tRNA methylation [Evidence IDA] [PMID 10779558]; GO_process: GO:0008033 - tRNA processing [Evidence IEA]; GO_process: GO:0006413 - translational initiation [Evidence IEA]; Gcd10p 367721 GCD10 30036889 GCD10 Sugiyamaella lignohabitans Gcd10p XP_018736256.1 366366 D 796027 CDS AWJ20_4727 30036890 complement(367873..368628) D 1 NC_031673.1 S-adenosylmethionine-dependent methyltransferase; methylates translational release factor Mrf1p; similar to E.coli PrmC; is not an essential gene; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_function: GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity [Evidence IDA,IMP] [PMID 16321977]; GO_function: GO:0008168 - methyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0008276 - protein methyltransferase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0032259 - methylation [Evidence IEA]; GO_process: GO:0006479 - protein methylation [Evidence IEA]; GO_process: GO:0006451 - translational readthrough [Evidence IGI] [PMID 16321977]; Mtq1p 368628 MTQ1 30036890 MTQ1 Sugiyamaella lignohabitans Mtq1p XP_018736257.1 367873 R 796027 CDS AWJ20_4728 30036891 369392..370609 D 1 NC_031673.1 Putative cysteine synthase; localized to the mitochondrial outer membrane; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IDA] [PMID 16407407]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0004124 - cysteine synthase activity [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0019344 - cysteine biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0006535 - cysteine biosynthetic process from serine [Evidence IEA]; putative cysteine synthase 370609 30036891 AWJ20_4728 Sugiyamaella lignohabitans putative cysteine synthase XP_018736258.1 369392 D 796027 CDS AWJ20_4729 30036892 complement(370763..371788) D 1 NC_031673.1 Catalytic subunit of protein phosphatase 2A (PP2A); functionally redundant with Pph22p; methylated at C terminus; forms alternate complexes with several regulatory subunits; involved in signal transduction and regulation of mitosis; forms nuclear foci upon DNA replication stress; PPH21 has a paralog, PPH22, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_component: GO:0000159 - protein phosphatase type 2A complex [Evidence IDA] [PMID 17550305]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA,IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004721 - phosphoprotein phosphatase activity [Evidence IEA,IEA]; GO_function: GO:0004722 - protein serine/threonine phosphatase activity [Evidence IMP] [PMID 2176150]; GO_process: GO:0000082 - G1/S transition of mitotic cell cycle [Evidence IGI] [PMID 12518319]; GO_process: GO:0007015 - actin filament organization [Evidence TAS] [PMID 9001215]; GO_process: GO:0007117 - budding cell bud growth [Evidence TAS] [PMID 9001215]; GO_process: GO:0007094 - mitotic spindle assembly checkpoint [Evidence IPI] [PMID 9001215]; GO_process: GO:0006470 - protein dephosphorylation [Evidence TAS] [PMID 9001215]; GO_process: GO:0006417 - regulation of translation [Evidence IPI] [PMID 10329624]; phosphoprotein phosphatase 2A catalytic subunit PPH21 371788 PPH21 30036892 PPH21 Sugiyamaella lignohabitans phosphoprotein phosphatase 2A catalytic subunit PPH21 XP_018736259.1 370763 R 796027 CDS AWJ20_4730 30036894 374864..376864 D 1 NC_031673.1 Subunit (61/68 kDa) of TFIID and SAGA complexes; involved in RNA polymerase II transcription initiation and in chromatin modification, similar to histone H2A; GO_component: GO:0000124 - SAGA complex [Evidence IDA] [PMID 9674426]; GO_component: GO:0046695 - SLIK (SAGA-like) complex [Evidence IDA] [PMID 12446794]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005669 - transcription factor TFIID complex [Evidence IEA]; GO_component: GO:0005669 - transcription factor TFIID complex [Evidence IDA] [PMID 10788514]; GO_component: GO:0005669 - transcription factor TFIID complex [Evidence IDA] [PMID 15448131]; GO_function: GO:0001102 - RNA polymerase II activating transcription factor binding [Evidence IDA,IPI] [PMID 12501245]; GO_function: GO:0001075 - RNA polymerase II core promoter sequence-specific DNA binding transcription factor activity involved in preinitiation complex assembly [Evidence IC]; GO_function: GO:0017025 - TBP-class protein binding [Evidence IDA] [PMID 10751405]; GO_function: GO:0003682 - chromatin binding [Evidence IDA] [PMID 10817999]; GO_function: GO:0003682 - chromatin binding [Evidence IDA] [PMID 12600943]; GO_function: GO:0032947 - protein complex scaffold [Evidence IMP] [PMID 9674426]; GO_function: GO:0046982 - protein heterodimerization activity [Evidence IEA]; GO_process: GO:0006352 - DNA-templated transcription, initiation [Evidence IEA]; GO_process: GO:0051123 - RNA polymerase II transcriptional preinitiation complex assembly [Evidence IMP] [PMID 12600943]; GO_process: GO:0051123 - RNA polymerase II transcriptional preinitiation complex assembly [Evidence IMP] [PMID 12840001]; GO_process: GO:0016568 - chromatin modification [Evidence IDA,IMP] [PMID 9674426]; GO_process: GO:0016573 - histone acetylation [Evidence IDA] [PMID 9674426]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IMP] [PMID 10751405]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IMP] [PMID 11561287]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IDA] [PMID 12138208]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IMP] [PMID 12582246]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IDA] [PMID 15448131]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Taf12p 376864 TAF12 30036894 TAF12 Sugiyamaella lignohabitans Taf12p XP_018736260.1 374864 D 796027 CDS AWJ20_4731 30036895 complement(377202..377861) D 1 NC_031673.1 uncharacterized protein 377861 30036895 AWJ20_4731 Sugiyamaella lignohabitans uncharacterized protein XP_018736261.1 377202 R 796027 CDS AWJ20_4732 30036896 379854..380492 D 1 NC_031673.1 One of four subunits of the ESCRT-III complex; involved in the sorting of transmembrane proteins into the multivesicular body (MVB) pathway; recruited from the cytoplasm to endosomal membranes; ESCRT-III stands for endosomal sorting complex required for transport III; GO_component: GO:0000815 - ESCRT III complex [Evidence IDA] [PMID 12194857]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 9606181]; GO_component: GO:0005768 - endosome [Evidence IEA]; GO_component: GO:0010008 - endosome membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0005515 - protein binding [Evidence IPI] [PMID 15086794]; GO_process: GO:0071454 - cellular response to anoxia [Evidence IMP] [PMID 20402793]; GO_process: GO:0070676 - intralumenal vesicle formation [Evidence IMP] [PMID 19234443]; GO_process: GO:0045324 - late endosome to vacuole transport [Evidence IMP] [PMID 9606181]; GO_process: GO:0015031 - protein transport [Evidence IEA,IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0043162 - ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway [Evidence IC] [PMID 15086794]; ESCRT-III subunit protein SNF7 380492 SNF7 30036896 SNF7 Sugiyamaella lignohabitans ESCRT-III subunit protein SNF7 XP_018736262.1 379854 D 796027 CDS AWJ20_4733 30036897 complement(380498..382045) D 1 NC_031673.1 cis-Golgi t-SNARE syntaxin; required for vesicular transport between the ER and the Golgi complex; binds at least 9 SNARE proteins; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA]; GO_component: GO:0031201 - SNARE complex [Evidence IDA] [PMID 11001058]; GO_component: GO:0031201 - SNARE complex [Evidence IDA] [PMID 11959998]; GO_component: GO:0005801 - cis-Golgi network [Evidence IDA] [PMID 9725919]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IDA] [PMID 1400588]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA,IEA]; GO_function: GO:0005484 - SNAP receptor activity [Evidence IEA]; GO_function: GO:0005484 - SNAP receptor activity [Evidence IDA] [PMID 11001058]; GO_function: GO:0005484 - SNAP receptor activity [Evidence IDA] [PMID 11959998]; GO_process: GO:0006888 - ER to Golgi vesicle-mediated transport [Evidence IMP] [PMID 9545229]; GO_process: GO:0006891 - intra-Golgi vesicle-mediated transport [Evidence IMP] [PMID 7596416]; GO_process: GO:0006886 - intracellular protein transport [Evidence IEA]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0006906 - vesicle fusion [Evidence IDA] [PMID 11001046]; GO_process: GO:0048280 - vesicle fusion with Golgi apparatus [Evidence IMP] [PMID 9545229]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IEA]; Sed5p 382045 SED5 30036897 SED5 Sugiyamaella lignohabitans Sed5p XP_018736263.1 380498 R 796027 CDS AWJ20_4734 30036898 383190..384938 D 1 NC_031673.1 uncharacterized protein 384938 30036898 AWJ20_4734 Sugiyamaella lignohabitans uncharacterized protein XP_018736264.1 383190 D 796027 CDS AWJ20_4735 30036899 386967..387689 D 1 NC_031673.1 uncharacterized protein 387689 30036899 AWJ20_4735 Sugiyamaella lignohabitans uncharacterized protein XP_018736265.1 386967 D 796027 CDS AWJ20_4736 30036900 complement(387936..388418) D 1 NC_031673.1 Mitochondrial ribosomal protein of the small subunit; GO_component: GO:0005763 - mitochondrial small ribosomal subunit [Evidence IPI] [PMID 11278769]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IPI] [PMID 11278769]; GO_process: GO:0032543 - mitochondrial translation [Evidence IC] [PMID 11278769]; mitochondrial 37S ribosomal protein RSM24 388418 RSM24 30036900 RSM24 Sugiyamaella lignohabitans mitochondrial 37S ribosomal protein RSM24 XP_018736266.1 387936 R 796027 CDS AWJ20_4737 30036901 389936..390820 D 1 NC_031673.1 Mitochondrial ribosomal protein of the small subunit; has similarity to E. coli S7 ribosomal protein; GO_component: GO:0005763 - mitochondrial small ribosomal subunit [Evidence IPI] [PMID 11278769]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IPI] [PMID 11278769]; GO_process: GO:0032543 - mitochondrial translation [Evidence IC] [PMID 11278769]; GO_process: GO:0006412 - translation [Evidence IEA]; mitochondrial 37S ribosomal protein RSM7 390820 RSM7 30036901 RSM7 Sugiyamaella lignohabitans mitochondrial 37S ribosomal protein RSM7 XP_018736267.1 389936 D 796027 CDS AWJ20_4738 30036902 join(393587..393694,393767..394708) D 1 NC_031673.1 Chromatin associated high mobility group (HMG) family member; involved in genome maintenance; rDNA-binding component of the Pol I transcription system; associates with a 5'-3' DNA helicase and Fpr1p, a prolyl isomerase; relocalizes to the cytosol in response to hypoxia; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 8969238]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 22932476]; GO_component: GO:0000790 - nuclear chromatin [Evidence IDA] [PMID 16612005]; GO_component: GO:0000790 - nuclear chromatin [Evidence IDA] [PMID 17646381]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 12374750]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22932476]; GO_component: GO:0032040 - small-subunit processome [Evidence IDA] [PMID 22553361]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0008301 - DNA binding, bending [Evidence IDA] [PMID 15507436]; GO_function: GO:0008301 - DNA binding, bending [Evidence IDA] [PMID 16533046]; GO_function: GO:0003690 - double-stranded DNA binding [Evidence IDA] [PMID 15507436]; GO_function: GO:0003690 - double-stranded DNA binding [Evidence IDA] [PMID 16533046]; GO_function: GO:0000400 - four-way junction DNA binding [Evidence IDA] [PMID 15507436]; GO_function: GO:0000400 - four-way junction DNA binding [Evidence IDA] [PMID 16533046]; GO_process: GO:0060962 - regulation of ribosomal protein gene transcription from RNA polymerase II promoter [Evidence IMP] [PMID 17875934]; GO_process: GO:0060962 - regulation of ribosomal protein gene transcription from RNA polymerase II promoter [Evidence IGI,IMP] [PMID 18187511]; GO_process: GO:0034401 - regulation of transcription by chromatin organization [Evidence IDA] [PMID 18451108]; GO_process: GO:0006356 - regulation of transcription from RNA polymerase I promoter [Evidence IGI] [PMID 12374750]; GO_process: GO:0006356 - regulation of transcription from RNA polymerase I promoter [Evidence IMP] [PMID 16612005]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Hmo1p 394708 HMO1 30036902 HMO1 Sugiyamaella lignohabitans Hmo1p XP_018736268.1 393587 D 796027 CDS AWJ20_4739 30036903 400511..402397 D 1 NC_031673.1 Acyl-CoA:sterol acyltransferase; endoplasmic reticulum enzyme that contributes the major sterol esterification activity in the presence of oxygen; ARE2 has a paralog, ARE1, that arose from the whole genome duplication; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 10672016]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0008374 - O-acyltransferase activity [Evidence IEA]; GO_function: GO:0034736 - cholesterol O-acyltransferase activity [Evidence IEA]; GO_function: GO:0034737 - ergosterol O-acyltransferase activity [Evidence IGI,IMP] [PMID 10672016]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016746 - transferase activity, transferring acyl groups [Evidence IEA]; GO_process: GO:0008204 - ergosterol metabolic process [Evidence IGI,IMP] [PMID 10672016]; Are2p 402397 ARE2 30036903 ARE2 Sugiyamaella lignohabitans Are2p XP_018736269.1 400511 D 796027 CDS AWJ20_4740 30036905 complement(403065..404108) D 1 NC_031673.1 uncharacterized protein 404108 30036905 AWJ20_4740 Sugiyamaella lignohabitans uncharacterized protein XP_018736270.1 403065 R 796027 CDS AWJ20_4741 30036906 complement(404681..406552) D 1 NC_031673.1 kinase-regulated stress-responsive transcription factor SKN7 406552 SKN7 30036906 SKN7 Sugiyamaella lignohabitans kinase-regulated stress-responsive transcription factor SKN7 XP_018736271.1 404681 R 796027 CDS AWJ20_4742 30036907 complement(412627..414981) D 1 NC_031673.1 serine/threonine protein kinase SCH9 414981 SCH9 30036907 SCH9 Sugiyamaella lignohabitans serine/threonine protein kinase SCH9 XP_018736272.1 412627 R 796027 CDS AWJ20_4743 30036908 complement(417173..418498) D 1 NC_031673.1 Mannosyltransferase; involved in asparagine-linked glycosylation in the endoplasmic reticulum (ER); essential for viability, mutation is functionally complemented by human ortholog; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IPI] [PMID 15044395]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISS] [PMID 2182636]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0019187 - beta-1,4-mannosyltransferase activity [Evidence IDA] [PMID 6368538]; GO_function: GO:0004578 - chitobiosyldiphosphodolichol beta-mannosyltransferase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA,IEA]; GO_process: GO:0009058 - biosynthetic process [Evidence IEA]; GO_process: GO:0097502 - mannosylation [Evidence IEA]; GO_process: GO:0006490 - oligosaccharide-lipid intermediate biosynthetic process [Evidence IMP] [PMID 7037780]; GO_process: GO:0006487 - protein N-linked glycosylation [Evidence IMP] [PMID 6369318]; GO_process: GO:0006486 - protein glycosylation [Evidence IEA]; chitobiosyldiphosphodolichol beta-1,4 mannosyltransferase 418498 ALG1 30036908 ALG1 Sugiyamaella lignohabitans chitobiosyldiphosphodolichol beta-1,4 mannosyltransferase XP_018736273.1 417173 R 796027 CDS AWJ20_4744 30036909 complement(419425..420120) D 1 NC_031673.1 calmodulin 420120 30036909 AWJ20_4744 Sugiyamaella lignohabitans calmodulin XP_018736274.1 419425 R 796027 CDS AWJ20_4745 30036910 419597..420163 D 1 NC_031673.1 Calmodulin; Ca++ binding protein that regulates Ca++ independent processes (mitosis, bud growth, actin organization, endocytosis, etc.) and Ca++ dependent processes (stress-activated pathways), targets include Nuf1p, Myo2p and calcineurin; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 1639847]; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 1639847]; GO_component: GO:0005823 - central plaque of spindle pole body [Evidence IDA] [PMID 8601600]; GO_component: GO:0005823 - central plaque of spindle pole body [Evidence IDA] [PMID 8886974]; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA]; GO_component: GO:0000131 - incipient cellular bud site [Evidence IDA] [PMID 1639847]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 1639847]; GO_component: GO:0005816 - spindle pole body [Evidence IEA]; GO_function: GO:0005509 - calcium ion binding [Evidence IEA]; GO_function: GO:0005509 - calcium ion binding [Evidence IDA] [PMID 3533275]; GO_function: GO:0005509 - calcium ion binding [Evidence IDA] [PMID 8461293]; GO_function: GO:0048306 - calcium-dependent protein binding [Evidence IDA] [PMID 1321337]; GO_function: GO:0048306 - calcium-dependent protein binding [Evidence IPI] [PMID 9756868]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0005515 - protein binding [Evidence IPI] [PMID 10749918]; GO_function: GO:0005515 - protein binding [Evidence IPI] [PMID 7925277]; GO_function: GO:0005515 - protein binding [Evidence IPI] [PMID 8247006]; GO_function: GO:0005515 - protein binding [Evidence IPI] [PMID 8294515]; GO_function: GO:0005515 - protein binding [Evidence IPI] [PMID 9450989]; GO_process: GO:0006607 - NLS-bearing protein import into nucleus [Evidence IMP] [PMID 17878171]; GO_process: GO:0007114 - cell budding [Evidence IMP] [PMID 8310294]; GO_process: GO:0007010 - cytoskeleton organization [Evidence IMP] [PMID 8310294]; GO_process: GO:0000742 - karyogamy involved in conjugation with cellular fusion [Evidence IGI,IMP] [PMID 12836012]; GO_process: GO:0016237 - microautophagy [Evidence IMP] [PMID 16055436]; GO_process: GO:0006661 - phosphatidylinositol biosynthetic process [Evidence IGI,IMP] [PMID 12079494]; GO_process: GO:0006898 - receptor-mediated endocytosis [Evidence IMP] [PMID 7988551]; GO_process: GO:0006898 - receptor-mediated endocytosis [Evidence IMP] [PMID 9450989]; GO_process: GO:0051300 - spindle pole body organization [Evidence IMP] [PMID 1469052]; GO_process: GO:0042991 - transcription factor import into nucleus [Evidence IMP] [PMID 17878171]; GO_process: GO:0042144 - vacuole fusion, non-autophagic [Evidence IDA,IMP] [PMID 9859992]; calmodulin 420163 CMD1 30036910 CMD1 Sugiyamaella lignohabitans calmodulin XP_018736275.1 419597 D 796027 CDS AWJ20_4746 30036911 join(424057..424204,424335..427372) D 1 NC_031673.1 uncharacterized protein 427372 30036911 AWJ20_4746 Sugiyamaella lignohabitans uncharacterized protein XP_018736276.1 424057 D 796027 CDS AWJ20_4747 30036912 428316..429392 D 1 NC_031673.1 uncharacterized protein 429392 30036912 AWJ20_4747 Sugiyamaella lignohabitans uncharacterized protein XP_018736277.1 428316 D 796027 CDS AWJ20_4748 30036913 complement(429684..431108) D 1 NC_031673.1 Putative SCF-ubiquitin ligase F-box protein; based on both genetic and physical interactions and sequence similarity; identified in association with Cdc53p, Skp1p and Ubi4 in large and small-scale studies; GO_component: GO:0019005 - SCF ubiquitin ligase complex [Evidence IDA] [PMID 10582239]; GO_component: GO:0019005 - SCF ubiquitin ligase complex [Evidence IDA,IPI] [PMID 14747994]; GO_component: GO:0019005 - SCF ubiquitin ligase complex [Evidence IPI] [PMID 17141224]; GO_function: GO:0030674 - protein binding, bridging [Evidence ISA] [PMID 10582239]; GO_function: GO:0030674 - protein binding, bridging [Evidence ISA] [PMID 9635407]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence ISA] [PMID 10582239]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence ISA] [PMID 9635407]; GO_process: GO:0031146 - SCF-dependent proteasomal ubiquitin-dependent protein catabolic process [Evidence IGI,ISA] [PMID 10582239]; GO_process: GO:0031146 - SCF-dependent proteasomal ubiquitin-dependent protein catabolic process [Evidence ISA] [PMID 9635407]; GO_process: GO:0071406 - cellular response to methylmercury [Evidence IMP] [PMID 17141224]; GO_process: GO:0016567 - protein ubiquitination [Evidence IEA]; SCF ubiquitin ligase complex subunit HRT3 431108 HRT3 30036913 HRT3 Sugiyamaella lignohabitans SCF ubiquitin ligase complex subunit HRT3 XP_018736278.1 429684 R 796027 CDS AWJ20_4749 30036914 434099..436300 D 1 NC_031673.1 Component of the polarisome; functions in actin cytoskeletal organization during polarized growth; acts as a scaffold for Mkk1p and Mpk1p cell wall integrity signaling components; potential Cdc28p substrate; coding sequence contains length polymorphisms in different strains; SPA2 has a paralog, SPH1, that arose from the whole genome duplication; GO_component: GO:0005938 - cell cortex [Evidence IDA] [PMID 23673619]; GO_component: GO:0051286 - cell tip [Evidence IEA]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 9214378]; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 12361575]; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 2647769]; GO_component: GO:0000131 - incipient cellular bud site [Evidence IDA] [PMID 9214378]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 2647769]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 9214378]; GO_component: GO:0000133 - polarisome [Evidence IDA] [PMID 9632790]; GO_function: GO:0005078 - MAP-kinase scaffold activity [Evidence IDA,IMP] [PMID 12361575]; GO_process: GO:0007121 - bipolar cellular bud site selection [Evidence IMP] [PMID 8909546]; GO_process: GO:0007118 - budding cell apical bud growth [Evidence IGI,IMP] [PMID 10866679]; GO_process: GO:0030010 - establishment of cell polarity [Evidence IMP] [PMID 8013906]; GO_process: GO:0030010 - establishment of cell polarity [Evidence IMP] [PMID 8909546]; GO_process: GO:0036267 - invasive filamentous growth [Evidence IGI] [PMID 9443897]; GO_process: GO:0031382 - mating projection assembly [Evidence IGI] [PMID 9443897]; GO_process: GO:2000251 - positive regulation of actin cytoskeleton reorganization [Evidence IGI,IMP] [PMID 12857882]; GO_process: GO:2000251 - positive regulation of actin cytoskeleton reorganization [Evidence IMP] [PMID 19633059]; GO_process: GO:0007124 - pseudohyphal growth [Evidence IMP] [PMID 9055077]; GO_process: GO:0007124 - pseudohyphal growth [Evidence IMP] [PMID 9443897]; GO_process: GO:0008360 - regulation of cell shape [Evidence IEA]; GO_process: GO:0031384 - regulation of initiation of mating projection growth [Evidence IMP] [PMID 14734532]; GO_process: GO:0032880 - regulation of protein localization [Evidence IMP] [PMID 10085294]; GO_process: GO:0032880 - regulation of protein localization [Evidence IMP] [PMID 11740491]; GO_process: GO:0032880 - regulation of protein localization [Evidence IMP] [PMID 12857882]; GO_process: GO:0032880 - regulation of protein localization [Evidence IMP] [PMID 16166638]; GO_process: GO:0032880 - regulation of protein localization [Evidence IMP] [PMID 8909546]; GO_process: GO:0032880 - regulation of protein localization [Evidence IMP] [PMID 9571251]; GO_process: GO:0032880 - regulation of protein localization [Evidence IMP] [PMID 9632790]; GO_process: GO:0031385 - regulation of termination of mating projection growth [Evidence IMP] [PMID 14734532]; Spa2p 436300 SPA2 30036914 SPA2 Sugiyamaella lignohabitans Spa2p XP_018736279.1 434099 D 796027 CDS AWJ20_4750 30036916 436538..437770 D 1 NC_031673.1 Component of the polarisome; functions in actin cytoskeletal organization during polarized growth; acts as a scaffold for Mkk1p and Mpk1p cell wall integrity signaling components; potential Cdc28p substrate; coding sequence contains length polymorphisms in different strains; SPA2 has a paralog, SPH1, that arose from the whole genome duplication; GO_component: GO:0005938 - cell cortex [Evidence IDA] [PMID 23673619]; GO_component: GO:0051286 - cell tip [Evidence IEA]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 9214378]; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 12361575]; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 2647769]; GO_component: GO:0000131 - incipient cellular bud site [Evidence IDA] [PMID 9214378]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 2647769]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 9214378]; GO_component: GO:0000133 - polarisome [Evidence IDA] [PMID 9632790]; GO_function: GO:0005078 - MAP-kinase scaffold activity [Evidence IDA,IMP] [PMID 12361575]; GO_process: GO:0007121 - bipolar cellular bud site selection [Evidence IMP] [PMID 8909546]; GO_process: GO:0007118 - budding cell apical bud growth [Evidence IGI,IMP] [PMID 10866679]; GO_process: GO:0030010 - establishment of cell polarity [Evidence IMP] [PMID 8013906]; GO_process: GO:0030010 - establishment of cell polarity [Evidence IMP] [PMID 8909546]; GO_process: GO:0036267 - invasive filamentous growth [Evidence IGI] [PMID 9443897]; GO_process: GO:0031382 - mating projection assembly [Evidence IGI] [PMID 9443897]; GO_process: GO:2000251 - positive regulation of actin cytoskeleton reorganization [Evidence IGI,IMP] [PMID 12857882]; GO_process: GO:2000251 - positive regulation of actin cytoskeleton reorganization [Evidence IMP] [PMID 19633059]; GO_process: GO:0007124 - pseudohyphal growth [Evidence IMP] [PMID 9055077]; GO_process: GO:0007124 - pseudohyphal growth [Evidence IMP] [PMID 9443897]; GO_process: GO:0008360 - regulation of cell shape [Evidence IEA]; GO_process: GO:0031384 - regulation of initiation of mating projection growth [Evidence IMP] [PMID 14734532]; GO_process: GO:0032880 - regulation of protein localization [Evidence IMP] [PMID 10085294]; GO_process: GO:0032880 - regulation of protein localization [Evidence IMP] [PMID 11740491]; GO_process: GO:0032880 - regulation of protein localization [Evidence IMP] [PMID 12857882]; GO_process: GO:0032880 - regulation of protein localization [Evidence IMP] [PMID 16166638]; GO_process: GO:0032880 - regulation of protein localization [Evidence IMP] [PMID 8909546]; GO_process: GO:0032880 - regulation of protein localization [Evidence IMP] [PMID 9571251]; GO_process: GO:0032880 - regulation of protein localization [Evidence IMP] [PMID 9632790]; GO_process: GO:0031385 - regulation of termination of mating projection growth [Evidence IMP] [PMID 14734532]; Spa2p 437770 SPA2 30036916 SPA2 Sugiyamaella lignohabitans Spa2p XP_018736280.1 436538 D 796027 CDS AWJ20_4751 30036917 complement(438011..439675) D 1 NC_031673.1 Putative amidase; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0004040 - amidase activity [Evidence IEA]; GO_function: GO:0004040 - amidase activity [Evidence ISS] [PMID 2263500]; GO_function: GO:0016884 - carbon-nitrogen ligase activity, with glutamine as amido-N-donor [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016811 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides [Evidence IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0008152 - metabolic process [Evidence IEA,IEA,IEA]; Amd2p 439675 AMD2 30036917 AMD2 Sugiyamaella lignohabitans Amd2p XP_018736281.1 438011 R 796027 CDS AWJ20_4752 30036918 complement(442508..442924) D 1 NC_031673.1 Putative gluconokinase; sequence similarity to bacterial and human gluconokinase; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm; upregulated by deletion of the RNAP-II associated factor, PAF1; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0046316 - gluconokinase activity [Evidence IEA]; GO_function: GO:0016301 - kinase activity [Evidence IEA,IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0046177 - D-gluconate catabolic process [Evidence IEA]; GO_process: GO:0019521 - D-gluconate metabolic process [Evidence IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0005975 - carbohydrate metabolic process [Evidence IEA]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; gluconokinase 442924 30036918 AWJ20_4752 Sugiyamaella lignohabitans gluconokinase XP_018736282.1 442508 R 796027 CDS AWJ20_4753 30036919 complement(443791..444552) D 1 NC_031673.1 Mitochondrial ribosomal protein of the large subunit; GO_component: GO:0005762 - mitochondrial large ribosomal subunit [Evidence IPI] [PMID 12392552]; GO_component: GO:0005762 - mitochondrial large ribosomal subunit [Evidence IDA] [PMID 9151978]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0004525 - ribonuclease III activity [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IPI] [PMID 12392552]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IDA] [PMID 9151978]; GO_process: GO:0090501 - RNA phosphodiester bond hydrolysis [Evidence IEA]; GO_process: GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic [Evidence IEA]; GO_process: GO:0006396 - RNA processing [Evidence IEA]; GO_process: GO:0032543 - mitochondrial translation [Evidence IC] [PMID 12392552]; GO_process: GO:0032543 - mitochondrial translation [Evidence IC] [PMID 9151978]; mitochondrial 54S ribosomal protein YmL15 444552 MRPL15 30036919 MRPL15 Sugiyamaella lignohabitans mitochondrial 54S ribosomal protein YmL15 XP_018736283.1 443791 R 796027 CDS AWJ20_4754 30036920 445059..446798 D 1 NC_031673.1 RNA-dependent ATPase; involved in pre-rRNA processing at sites A0, A1, and A2, and in control of cell cycle progression; contains two upstream open reading frames (uORFs) in 5' untranslated region which regulate translation; GO_component: GO:0030686 - 90S preribosome [Evidence IDA] [PMID 12150911]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 9154839]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004004 - ATP-dependent RNA helicase activity [Evidence IDA] [PMID 23153376]; GO_function: GO:0008026 - ATP-dependent helicase activity [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0008186 - RNA-dependent ATPase activity [Evidence IDA] [PMID 18975973]; GO_function: GO:0008186 - RNA-dependent ATPase activity [Evidence IDA] [PMID 23153376]; GO_function: GO:0004386 - helicase activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0000480 - endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 9154839]; GO_process: GO:0000447 - endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 9154839]; GO_process: GO:0000472 - endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 9154839]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; GO_process: GO:0048254 - snoRNA localization [Evidence IMP] [PMID 18833290]; RNA-dependent ATPase ROK1 446798 ROK1 30036920 ROK1 Sugiyamaella lignohabitans RNA-dependent ATPase ROK1 XP_018736284.1 445059 D 796027 CDS AWJ20_4755 30036921 complement(447044..447526) D 1 NC_031673.1 Subunit g of the mitochondrial F1F0 ATP synthase; reversibly phosphorylated on two residues; unphosphorylated form is required for dimerization of the ATP synthase complex, which in turn determines oligomerization of the complex and the shape of inner membrane cristae; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0031966 - mitochondrial membrane [Evidence IEA]; GO_component: GO:0000276 - mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) [Evidence IEA]; GO_component: GO:0000276 - mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) [Evidence IMP,IPI,ISS] [PMID 10336613]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0045263 - proton-transporting ATP synthase complex, coupling factor F(o) [Evidence IEA]; GO_function: GO:0015078 - hydrogen ion transmembrane transporter activity [Evidence IEA]; GO_function: GO:0046933 - proton-transporting ATP synthase activity, rotational mechanism [Evidence IDA] [PMID 20691145]; GO_function: GO:0005198 - structural molecule activity [Evidence IMP,IPI] [PMID 9857174]; GO_process: GO:0006754 - ATP biosynthetic process [Evidence IEA]; GO_process: GO:0015986 - ATP synthesis coupled proton transport [Evidence IEA]; GO_process: GO:0015986 - ATP synthesis coupled proton transport [Evidence IMP,ISS] [PMID 10336613]; GO_process: GO:0015986 - ATP synthesis coupled proton transport [Evidence IDA] [PMID 20691145]; GO_process: GO:0015986 - ATP synthesis coupled proton transport [Evidence IMP,IPI] [PMID 9857174]; GO_process: GO:0042407 - cristae formation [Evidence IMP] [PMID 19528297]; GO_process: GO:0006811 - ion transport [Evidence IEA]; GO_process: GO:0006461 - protein complex assembly [Evidence IMP] [PMID 17761666]; GO_process: GO:0035786 - protein complex oligomerization [Evidence IMP] [PMID 16551625]; GO_process: GO:0015992 - proton transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; F1F0 ATP synthase subunit g 447526 ATP20 30036921 ATP20 Sugiyamaella lignohabitans F1F0 ATP synthase subunit g XP_018736285.1 447044 R 796027 CDS AWJ20_4756 30036922 448978..450198 D 1 NC_031673.1 uncharacterized protein 450198 30036922 AWJ20_4756 Sugiyamaella lignohabitans uncharacterized protein XP_018736286.1 448978 D 796027 CDS AWJ20_4757 30036923 450577..452274 D 1 NC_031673.1 Flavin-containing monooxygenase; localized to the cytoplasmic face of the ER membrane; catalyzes oxidation of biological thiols to maintain the ER redox buffer ratio for correct folding of disulfide-bonded proteins; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IDA] [PMID 10077572]; GO_function: GO:0004499 - N,N-dimethylaniline monooxygenase activity [Evidence IEA]; GO_function: GO:0004499 - N,N-dimethylaniline monooxygenase activity [Evidence IDA] [PMID 10600176]; GO_function: GO:0050661 - NADP binding [Evidence IEA]; GO_function: GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO_function: GO:0004497 - monooxygenase activity [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0006457 - protein folding [Evidence IDA] [PMID 10077572]; Fmo1p 452274 FMO1 30036923 FMO1 Sugiyamaella lignohabitans Fmo1p XP_018736287.1 450577 D 796027 CDS AWJ20_4758 30036924 452728..454086 D 1 NC_031673.1 Dihydrouridine synthase; member of a widespread family of conserved proteins including Smm1p, Dus3p, and Dus4p; modifies pre-tRNA(Phe) at U17; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0017150 - tRNA dihydrouridine synthase activity [Evidence IEA]; GO_function: GO:0017150 - tRNA dihydrouridine synthase activity [Evidence IDA] [PMID 12003496]; GO_function: GO:0017150 - tRNA dihydrouridine synthase activity [Evidence IMP] [PMID 14970222]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0002943 - tRNA dihydrouridine synthesis [Evidence IEA]; GO_process: GO:0006400 - tRNA modification [Evidence IDA] [PMID 12003496]; GO_process: GO:0006400 - tRNA modification [Evidence IMP] [PMID 14970222]; GO_process: GO:0008033 - tRNA processing [Evidence IEA,IEA]; Dus1p 454086 DUS1 30036924 DUS1 Sugiyamaella lignohabitans Dus1p XP_018736288.1 452728 D 796027 CDS AWJ20_4759 30036925 complement(455674..456630) D 1 NC_031673.1 complexed with Cdc5 protein Cwf15 456630 cwf15 30036925 cwf15 Sugiyamaella lignohabitans complexed with Cdc5 protein Cwf15 XP_018736289.1 455674 R 796027 CDS AWJ20_4760 30036927 459024..460070 D 1 NC_031673.1 Protein involved in the HOG (high osmolarity glycerol) pathway; negatively regulates Hog1p by recruitment of phosphatase Ptc1p the Pbs2p-Hog1p complex; interacts with Bck1p and down regulates the cell wall integrity pathway; found in the nucleus and cytoplasm, contains an SH3 domain and a Ptc1p binding domain (PBM); GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14573466]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11914276]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006972 - hyperosmotic response [Evidence IMP,IPI] [PMID 14685261]; GO_process: GO:0000200 - inactivation of MAPK activity involved in cell wall organization or biogenesis [Evidence IMP,IPI] [PMID 22570491]; GO_process: GO:0006469 - negative regulation of protein kinase activity [Evidence IDA] [PMID 14685261]; GO_process: GO:0009408 - response to heat [Evidence IMP] [PMID 14573466]; Nbp2p 460070 NBP2 30036927 NBP2 Sugiyamaella lignohabitans Nbp2p XP_018736290.1 459024 D 796027 CDS AWJ20_4761 30036928 complement(460379..461458) D 1 NC_031673.1 uncharacterized protein 461458 30036928 AWJ20_4761 Sugiyamaella lignohabitans uncharacterized protein XP_018736291.1 460379 R 796027 CDS AWJ20_4762 30036929 complement(461752..464247) D 1 NC_031673.1 Largest subunit (p90) of the Chromatin Assembly Complex (CAF-1); chromatin assembly by CAF-1 is important for multiple processes including silencing at telomeres, mating type loci, and rDNA; maintenance of kinetochore structure; deactivation of the DNA damage checkpoint after DNA repair; and chromatin dynamics during transcription; GO_component: GO:0033186 - CAF-1 complex [Evidence IDA] [PMID 9030687]; GO_component: GO:0000775 - chromosome, centromeric region [Evidence IDA] [PMID 11782447]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9030688]; GO_function: GO:0042393 - histone binding [Evidence IDA] [PMID 16503640]; GO_process: GO:0006335 - DNA replication-dependent nucleosome assembly [Evidence IDA] [PMID 9030687]; GO_process: GO:0006335 - DNA replication-dependent nucleosome assembly [Evidence IMP] [PMID 9030688]; Rlf2p 464247 RLF2 30036929 RLF2 Sugiyamaella lignohabitans Rlf2p XP_018736292.1 461752 R 796027 CDS AWJ20_4763 30036930 complement(465594..468080) D 1 NC_031673.1 hypothetical protein involved in vacuolar protein sorting; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_function: GO:0004177 - aminopeptidase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0008237 - metallopeptidase activity [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0008233 - peptidase activity [Evidence IEA,IEA]; GO_process: GO:0006623 - protein targeting to vacuole [Evidence IMP] [PMID 12134085]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006508 - proteolysis [Evidence IEA,IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Vps70p 468080 VPS70 30036930 VPS70 Sugiyamaella lignohabitans Vps70p XP_018736293.1 465594 R 796027 CDS AWJ20_4764 30036931 complement(468452..471052) D 1 NC_031673.1 structure-specific endonuclease subunit 471052 slx4 30036931 slx4 Sugiyamaella lignohabitans structure-specific endonuclease subunit XP_018736294.1 468452 R 796027 CDS AWJ20_4765 30036932 complement(471658..472089) D 1 NC_031673.1 Cytoplasmic peptidyl-prolyl cis-trans isomerase (cyclophilin); catalyzes the cis-trans isomerization of peptide bonds N-terminal to proline residues; binds the drug cyclosporin A; N-terminally propionylated in vivo; protein abundance increases in response to DNA replication stress; GO_component: GO:0034967 - Set3 complex [Evidence IDA] [PMID 11711434]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0000118 - histone deacetylase complex [Evidence IPI] [PMID 15643056]; GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IEA]; GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IDA] [PMID 22984289]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 15643056]; GO_function: GO:0016018 - cyclosporin A binding [Evidence IMP] [PMID 7515500]; GO_function: GO:0016853 - isomerase activity [Evidence IEA]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_function: GO:0042277 - peptide binding [Evidence IEA]; GO_function: GO:0003755 - peptidyl-prolyl cis-trans isomerase activity [Evidence IEA,IEA,IEA]; GO_function: GO:0003755 - peptidyl-prolyl cis-trans isomerase activity [Evidence IDA] [PMID 2687115]; GO_process: GO:0030437 - ascospore formation [Evidence IMP] [PMID 15643056]; GO_process: GO:0044267 - cellular protein metabolic process [Evidence IMP] [PMID 11641409]; GO_process: GO:0044267 - cellular protein metabolic process [Evidence IMP] [PMID 12242280]; GO_process: GO:0016575 - histone deacetylation [Evidence IDA] [PMID 11711434]; GO_process: GO:0045836 - positive regulation of meiosis [Evidence IGI,IMP] [PMID 15643056]; GO_process: GO:0006457 - protein folding [Evidence IEA,IEA]; GO_process: GO:0000413 - protein peptidyl-prolyl isomerization [Evidence IEA,IEA,IEA]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; peptidylprolyl isomerase CPR1 472089 CPR1 30036932 CPR1 Sugiyamaella lignohabitans peptidylprolyl isomerase CPR1 XP_018736295.1 471658 R 796027 CDS AWJ20_4766 30036933 477114..478451 D 1 NC_031673.1 Protein containing an N-terminal epsin-like domain; involved in clathrin recruitment and traffic between the Golgi and endosomes; associates with the clathrin adaptor Gga2p; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA,IEA]; GO_component: GO:0030479 - actin cortical patch [Evidence TAS] [PMID 10652251]; GO_component: GO:0030125 - clathrin vesicle coat [Evidence IDA] [PMID 12483220]; GO_component: GO:0030665 - clathrin-coated vesicle membrane [Evidence IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0031410 - cytoplasmic vesicle [Evidence IEA]; GO_component: GO:0005768 - endosome [Evidence IDA] [PMID 12967568]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0030276 - clathrin binding [Evidence IDA] [PMID 12967568]; GO_function: GO:0008289 - lipid binding [Evidence IEA]; GO_function: GO:0080025 - phosphatidylinositol-3,5-bisphosphate binding [Evidence IDA] [PMID 14630930]; GO_function: GO:0032266 - phosphatidylinositol-3-phosphate binding [Evidence IDA] [PMID 14630930]; GO_function: GO:0005515 - protein binding [Evidence IPI] [PMID 12483220]; GO_process: GO:0006895 - Golgi to endosome transport [Evidence IMP] [PMID 12483220]; GO_process: GO:0000147 - actin cortical patch assembly [Evidence ISS] [PMID 10449404]; GO_process: GO:0030036 - actin cytoskeleton organization [Evidence IMP] [PMID 12967568]; GO_process: GO:0007015 - actin filament organization [Evidence ISS] [PMID 10449404]; GO_process: GO:0034498 - early endosome to Golgi transport [Evidence IGI] [PMID 20658963]; GO_process: GO:0032511 - late endosome to vacuole transport via multivesicular body sorting pathway [Evidence IMP] [PMID 15107463]; GO_process: GO:0071985 - multivesicular body sorting pathway [Evidence IMP] [PMID 12967568]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Ent3p 478451 ENT3 30036933 ENT3 Sugiyamaella lignohabitans Ent3p XP_018736296.1 477114 D 796027 CDS AWJ20_4767 30036934 complement(join(478679..479334,479500..479569)) D 1 NC_031673.1 Highly-acidic RWD domain-containing hypothetical protein; cytoplasmic; forms a complex with Rbg2p; interacts with Rbg1p and Gcn1p; associates with translating ribosomes; putative intrinsically unstructured protein; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005844 - polysome [Evidence IDA] [PMID 19448108]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0002181 - cytoplasmic translation [Evidence IGI] [PMID 21076151]; Gir2p 479569 GIR2 30036934 GIR2 Sugiyamaella lignohabitans Gir2p XP_018736297.1 478679 R 796027 CDS AWJ20_4768 30036935 480189..482804 D 1 NC_031673.1 Muscle M-line assembly protein unc-89 482804 MIF2 30036935 MIF2 Sugiyamaella lignohabitans Muscle M-line assembly protein unc-89 XP_018736298.1 480189 D 796027 CDS AWJ20_4769 30036936 483229..485949 D 1 NC_031673.1 Essential helicase component of heterohexameric MCM2-7 complexes; MCM2-7 complexes bind pre-replication complexes on DNA and melt DNA prior to replication; forms an Mcm4p-6p-7p subcomplex; shows nuclear accumulation in G1; homolog of S. pombe Cdc21p; GO_component: GO:0031261 - DNA replication preinitiation complex [Evidence IDA] [PMID 9554851]; GO_component: GO:0042555 - MCM complex [Evidence IEA]; GO_component: GO:0042555 - MCM complex [Evidence IDA] [PMID 12480933]; GO_component: GO:0097373 - MCM core complex [Evidence IDA] [PMID 13679365]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 10559985]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 10704410]; GO_component: GO:0005656 - nuclear pre-replicative complex [Evidence IDA] [PMID 16824194]; GO_component: GO:0005656 - nuclear pre-replicative complex [Evidence IDA] [PMID 9335335]; GO_component: GO:0043596 - nuclear replication fork [Evidence IDA] [PMID 16103218]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 10559985]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 10704410]; GO_component: GO:0031298 - replication fork protection complex [Evidence IDA] [PMID 16531994]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0043140 - ATP-dependent 3'-5' DNA helicase activity [Evidence IDA] [PMID 13679365]; GO_function: GO:0004003 - ATP-dependent DNA helicase activity [Evidence IDA] [PMID 15723534]; GO_function: GO:1990163 - ATP-dependent four-way junction helicase activity [Evidence IDA] [PMID 13679365]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0003678 - DNA helicase activity [Evidence IEA]; GO_function: GO:0003678 - DNA helicase activity [Evidence IDA] [PMID 18657510]; GO_function: GO:0003688 - DNA replication origin binding [Evidence IDA] [PMID 11756674]; GO_function: GO:0003688 - DNA replication origin binding [Evidence IDA] [PMID 16824194]; GO_function: GO:0004386 - helicase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0003697 - single-stranded DNA binding [Evidence IMP] [PMID 17895243]; GO_function: GO:0017116 - single-stranded DNA-dependent ATP-dependent DNA helicase activity [Evidence IDA] [PMID 18657510]; GO_function: GO:0043142 - single-stranded DNA-dependent ATPase activity [Evidence IDA] [PMID 15723534]; GO_process: GO:0006260 - DNA replication [Evidence IEA,IEA]; GO_process: GO:0006270 - DNA replication initiation [Evidence IEA]; GO_process: GO:0006270 - DNA replication initiation [Evidence IGI] [PMID 2044962]; GO_process: GO:0006271 - DNA strand elongation involved in DNA replication [Evidence IMP] [PMID 10834843]; GO_process: GO:0006268 - DNA unwinding involved in DNA replication [Evidence IDA] [PMID 13679365]; GO_process: GO:0006268 - DNA unwinding involved in DNA replication [Evidence IDA] [PMID 15723534]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0000727 - double-strand break repair via break-induced replication [Evidence IMP] [PMID 20516198]; GO_process: GO:0033260 - nuclear cell cycle DNA replication [Evidence IMP] [PMID 10834843]; GO_process: GO:0033260 - nuclear cell cycle DNA replication [Evidence IMP] [PMID 2044962]; GO_process: GO:0006267 - pre-replicative complex assembly involved in nuclear cell cycle DNA replication [Evidence IDA] [PMID 16824194]; GO_process: GO:0006267 - pre-replicative complex assembly involved in nuclear cell cycle DNA replication [Evidence IPI] [PMID 9335335]; MCM DNA helicase complex subunit MCM4 485949 MCM4 30036936 MCM4 Sugiyamaella lignohabitans MCM DNA helicase complex subunit MCM4 XP_018736299.1 483229 D 796027 CDS AWJ20_4770 30036938 complement(486060..488579) D 1 NC_031673.1 Mitochondrial membrane protein; coordinates expression of mitochondrially-encoded genes; may facilitate delivery of mRNA to membrane-bound translation machinery; GO_component: GO:0016021 - integral component of membrane [Evidence IDA] [PMID 8917313]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IDA] [PMID 8917313]; GO_component: GO:0042645 - mitochondrial nucleoid [Evidence IDA] [PMID 12637560]; GO_component: GO:0042645 - mitochondrial nucleoid [Evidence IDA] [PMID 15692048]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0009060 - aerobic respiration [Evidence IMP] [PMID 8917313]; GO_process: GO:0032543 - mitochondrial translation [Evidence IMP] [PMID 12637560]; GO_process: GO:0006412 - translation [Evidence IEA]; Sls1p 488579 SLS1 30036938 SLS1 Sugiyamaella lignohabitans Sls1p XP_018736300.1 486060 R 796027 CDS AWJ20_4771 30036939 488843..490696 D 1 NC_031673.1 RNA polymerase I upstream activation factor complex subunit Rrn5 490696 rrn5 30036939 rrn5 Sugiyamaella lignohabitans RNA polymerase I upstream activation factor complex subunit Rrn5 XP_018736301.1 488843 D 796027 CDS AWJ20_4772 30036940 492519..494135 D 1 NC_031673.1 Chitin transglycosylase; functions in the transfer of chitin to beta(1-6) and beta(1-3) glucans in the cell wall; similar and functionally redundant to Utr2; localizes to sites of polarized growth; expression induced by cell wall stress; GO_component: GO:0031225 - anchored component of membrane [Evidence IEA]; GO_component: GO:0005618 - cell wall [Evidence IEA,IEA,IEA]; GO_component: GO:0005576 - extracellular region [Evidence IEA]; GO_component: GO:0009277 - fungal-type cell wall [Evidence IDA] [PMID 10757808]; GO_component: GO:0009277 - fungal-type cell wall [Evidence IDA] [PMID 15781460]; GO_component: GO:0000131 - incipient cellular bud site [Evidence IDA] [PMID 10757808]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016798 - hydrolase activity, acting on glycosyl bonds [Evidence IEA,IEA]; GO_function: GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]; GO_function: GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IGI,IMP] [PMID 18694928]; GO_function: GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IDA] [PMID 23919454]; GO_process: GO:0005975 - carbohydrate metabolic process [Evidence IEA]; GO_process: GO:0006037 - cell wall chitin metabolic process [Evidence IGI,IMP] [PMID 18694928]; GO_process: GO:0071555 - cell wall organization [Evidence IEA]; GO_process: GO:0031505 - fungal-type cell wall organization [Evidence IGI,IMP] [PMID 18694928]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; Crh1p 494135 CRH1 30036940 CRH1 Sugiyamaella lignohabitans Crh1p XP_018736302.1 492519 D 796027 CDS AWJ20_4773 30036941 complement(494344..495246) D 1 NC_031673.1 uncharacterized protein 495246 30036941 AWJ20_4773 Sugiyamaella lignohabitans uncharacterized protein XP_018736303.1 494344 R 796027 CDS AWJ20_4774 30036942 complement(496087..497916) D 1 NC_031673.1 DNA-binding transcription repressor ASH1 497916 ASH1 30036942 ASH1 Sugiyamaella lignohabitans DNA-binding transcription repressor ASH1 XP_018736304.1 496087 R 796027 CDS AWJ20_4775 30036943 501045..501920 D 1 NC_031673.1 uncharacterized protein 501920 30036943 AWJ20_4775 Sugiyamaella lignohabitans uncharacterized protein XP_018736305.1 501045 D 796027 CDS AWJ20_4776 30036944 complement(502142..502729) D 1 NC_031673.1 Cytoplasmic RNA-binding protein; contains an RNA recognition motif (RRM); may have a role in mRNA translation, as suggested by genetic interactions with genes encoding proteins involved in translational initiation; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 10764794]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0008143 - poly(A) binding [Evidence IDA] [PMID 10764794]; GO_process: GO:0016071 - mRNA metabolic process [Evidence IGI] [PMID 10764794]; Sgn1p 502729 SGN1 30036944 SGN1 Sugiyamaella lignohabitans Sgn1p XP_018736306.1 502142 R 796027 CDS AWJ20_4777 30036945 505064..505726 D 1 NC_031673.1 uncharacterized protein 505726 30036945 AWJ20_4777 Sugiyamaella lignohabitans uncharacterized protein XP_018736307.1 505064 D 796027 CDS AWJ20_4778 30036946 complement(506179..508368) D 1 NC_031673.1 Mitochondrial ribosomal protein of the small subunit; also predicted to be an S-adenosylmethionine-dependent methyltransferase; GO_component: GO:0005763 - mitochondrial small ribosomal subunit [Evidence IPI] [PMID 11278769]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA]; GO_function: GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity [Evidence ISM] [PMID 19351663]; GO_function: GO:0008168 - methyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IPI] [PMID 11278769]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0032259 - methylation [Evidence IEA]; GO_process: GO:0032543 - mitochondrial translation [Evidence IC] [PMID 11278769]; GO_process: GO:0006412 - translation [Evidence IEA]; mitochondrial 37S ribosomal protein RSM22 508368 RSM22 30036946 RSM22 Sugiyamaella lignohabitans mitochondrial 37S ribosomal protein RSM22 XP_018736308.1 506179 R 796027 CDS AWJ20_4779 30036947 508852..509604 D 1 NC_031673.1 Putative serine hydrolase; likely target of Cyc8p-Tup1p-Rfx1p transcriptional regulation; sequence is similar to S. cerevisiae Fsh1p and Fsh2p and the human candidate tumor suppressor OVCA2; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; Fsh3p 509604 FSH3 30036947 FSH3 Sugiyamaella lignohabitans Fsh3p XP_018736309.1 508852 D 796027 CDS AWJ20_4780 30036949 complement(511059..514622) D 1 NC_031673.1 Protein required for proper cell fusion and cell morphology; functions in a complex with Kel2p to negatively regulate mitotic exit, interacts with Tem1p and Lte1p; localizes to regions of polarized growth; potential Cdc28p substrate; KEL1 has a paralog, KEL2, that arose from the whole genome duplication; GO_component: GO:0005938 - cell cortex [Evidence IDA] [PMID 23673619]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 9786949]; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 9786949]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 19053807]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 9786949]; GO_component: GO:0005628 - prospore membrane [Evidence IDA] [PMID 24390141]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0000755 - cytogamy [Evidence IGI,IMP,IPI] [PMID 9786949]; GO_process: GO:0001100 - negative regulation of exit from mitosis [Evidence IMP,IPI] [PMID 12234925]; GO_process: GO:0008360 - regulation of cell shape [Evidence IMP] [PMID 9786949]; Kel1p 514622 KEL1 30036949 KEL1 Sugiyamaella lignohabitans Kel1p XP_018736310.1 511059 R 796027 CDS AWJ20_4781 30036950 complement(514937..515938) D 1 NC_031673.1 uncharacterized protein 515938 30036950 AWJ20_4781 Sugiyamaella lignohabitans uncharacterized protein XP_018736311.1 514937 R 796027 CDS AWJ20_4782 30036951 complement(521591..522196) D 1 NC_031673.1 zinc-coordinating transcription factor SFP1 522196 SFP1 30036951 SFP1 Sugiyamaella lignohabitans zinc-coordinating transcription factor SFP1 XP_018736312.1 521591 R 796027 CDS AWJ20_4783 30036952 complement(529692..532442) D 1 NC_031673.1 Putative ATP-dependent permease of the ABC transporter family; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 11914276]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 19001347]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016887 - ATPase activity [Evidence IEA]; GO_function: GO:0042626 - ATPase activity, coupled to transmembrane movement of substances [Evidence ISS] [PMID 9020838]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence ISS] [PMID 9020838]; GO_process: GO:0006810 - transport [Evidence IEA]; putative ATP-dependent permease ADP1 532442 ADP1 30036952 ADP1 Sugiyamaella lignohabitans putative ATP-dependent permease ADP1 XP_018736313.1 529692 R 796027 CDS AWJ20_4784 30036953 complement(536380..537141) D 1 NC_031673.1 uncharacterized protein 537141 30036953 AWJ20_4784 Sugiyamaella lignohabitans uncharacterized protein XP_018736314.1 536380 R 796027 CDS AWJ20_4785 30036954 complement(537264..537707) D 1 NC_031673.1 uncharacterized protein 537707 30036954 AWJ20_4785 Sugiyamaella lignohabitans uncharacterized protein XP_018736315.1 537264 R 796027 CDS AWJ20_4786 30036955 complement(538006..539226) D 1 NC_031673.1 uncharacterized protein 539226 30036955 AWJ20_4786 Sugiyamaella lignohabitans uncharacterized protein XP_018736316.1 538006 R 796027 CDS AWJ20_4787 30036956 548268..551057 D 1 NC_031673.1 Auxilin-like protein involved in vesicular transport; clathrin-binding protein required for uncoating of clathrin-coated vesicles; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IDA] [PMID 11553703]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0030276 - clathrin binding [Evidence IDA] [PMID 16687570]; GO_function: GO:0043130 - ubiquitin binding [Evidence IDA] [PMID 18948116]; GO_process: GO:0072318 - clathrin coat disassembly [Evidence IMP] [PMID 11146663]; GO_process: GO:0048309 - endoplasmic reticulum inheritance [Evidence IMP] [PMID 11553703]; GO_process: GO:0032781 - positive regulation of ATPase activity [Evidence IDA] [PMID 16687570]; Swa2p 551057 SWA2 30036956 SWA2 Sugiyamaella lignohabitans Swa2p XP_018736317.1 548268 D 796027 CDS AWJ20_4788 30036957 complement(551288..553303) D 1 NC_031673.1 Subunit of TFIIH and nucleotide excision repair factor 3 complexes; required for nucleotide excision repair, target for transcriptional activators; relocalizes to the cytosol in response to hypoxia; GO_component: GO:0000439 - core TFIIH complex [Evidence IEA]; GO_component: GO:0000439 - core TFIIH complex [Evidence IDA] [PMID 14500720]; GO_component: GO:0000439 - core TFIIH complex [Evidence IDA] [PMID 19818408]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 22932476]; GO_component: GO:0005675 - holo TFIIH complex [Evidence IDA] [PMID 19818408]; GO_component: GO:0000112 - nucleotide-excision repair factor 3 complex [Evidence IDA] [PMID 8855246]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22932476]; GO_function: GO:0000990 - core RNA polymerase binding transcription factor activity [Evidence IC] [PMID 19818408]; GO_function: GO:0032266 - phosphatidylinositol-3-phosphate binding [Evidence IDA] [PMID 15909982]; GO_function: GO:0010314 - phosphatidylinositol-5-phosphate binding [Evidence IDA] [PMID 15909982]; GO_process: GO:0006281 - DNA repair [Evidence IEA]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0006289 - nucleotide-excision repair [Evidence IEA]; GO_process: GO:0006289 - nucleotide-excision repair [Evidence IMP] [PMID 7891722]; GO_process: GO:0070816 - phosphorylation of RNA polymerase II C-terminal domain [Evidence IDA] [PMID 19450536]; GO_process: GO:0070816 - phosphorylation of RNA polymerase II C-terminal domain [Evidence IDA] [PMID 19679665]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006360 - transcription from RNA polymerase I promoter [Evidence IMP] [PMID 12015980]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IDA] [PMID 19818408]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA,IEA]; TFIIH/NER complex subunit TFB1 553303 TFB1 30036957 TFB1 Sugiyamaella lignohabitans TFIIH/NER complex subunit TFB1 XP_018736318.1 551288 R 796027 CDS AWJ20_4789 30036958 553633..555303 D 1 NC_031673.1 Hsp70 protein that interacts with Zuo1p (a DnaJ homolog); interacts with Zuo1p to form a ribosome-associated complex that binds the ribosome via the Zuo1p subunit; also involved in pleiotropic drug resistance via sequential activation of PDR1 and PDR5; binds ATP; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 10792726]; GO_component: GO:0005844 - polysome [Evidence IDA] [PMID 16413483]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0051082 - unfolded protein binding [Evidence IGI,IPI] [PMID 11054575]; GO_function: GO:0051082 - unfolded protein binding [Evidence ISS] [PMID 9488429]; GO_process: GO:0002181 - cytoplasmic translation [Evidence IGI,IPI] [PMID 11054575]; GO_process: GO:0002181 - cytoplasmic translation [Evidence IGI,IMP] [PMID 11929994]; GO_process: GO:0006364 - rRNA processing [Evidence IMP] [PMID 20368619]; GO_process: GO:0006450 - regulation of translational fidelity [Evidence IMP] [PMID 15456889]; GO_process: GO:0006452 - translational frameshifting [Evidence IMP] [PMID 16607023]; Ssz1p 555303 SSZ1 30036958 SSZ1 Sugiyamaella lignohabitans Ssz1p XP_018736319.1 553633 D 796027 CDS AWJ20_4790 30036960 complement(555554..558037) D 1 NC_031673.1 Subunit of a heterodimeric peroxisomal ABC transport complex; required for import of long-chain fatty acids into peroxisomes; similarity to human adrenoleukodystrophy transporter ABCD1 and ABCD2 and ALD-related proteins; mutations in ABCD1 cause X-linked adrenoleukodystrophy (X-ALD), a peroxisomal disorder; complex also includes Pxa2p; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0005779 - integral component of peroxisomal membrane [Evidence IDA] [PMID 8670886]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005778 - peroxisomal membrane [Evidence IEA]; GO_component: GO:0005777 - peroxisome [Evidence IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016887 - ATPase activity [Evidence IEA]; GO_function: GO:0042626 - ATPase activity, coupled to transmembrane movement of substances [Evidence IEA]; GO_function: GO:0042626 - ATPase activity, coupled to transmembrane movement of substances [Evidence IMP,ISS] [PMID 8670886]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0015908 - fatty acid transport [Evidence IMP] [PMID 8670886]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; ATP-binding cassette long-chain fatty acid transporter PXA1 558037 PXA1 30036960 PXA1 Sugiyamaella lignohabitans ATP-binding cassette long-chain fatty acid transporter PXA1 XP_018736320.1 555554 R 796027 CDS AWJ20_4792 30036962 complement(558873..561473) D 1 NC_031673.1 Potassium transporter that mediates K+ influx; activates high-affinity Ca2+ influx system (HACS) during mating pheromone response; expression up-regulated in response to alpha factor; localized to sites of polarized growth; member of a fungal-specific gene family; potential Cdc28p substrate; KCH1 has a paralog, PRM6, that arose from the whole genome duplication; GO_component: GO:0000324 - fungal-type vacuole [Evidence IDA] [PMID 14562095]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0005887 - integral component of plasma membrane [Evidence IDA] [PMID 23204190]; GO_component: GO:0005937 - mating projection [Evidence IDA] [PMID 23204190]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0015079 - potassium ion transmembrane transporter activity [Evidence IDA] [PMID 23204190]; GO_process: GO:0071805 - potassium ion transmembrane transport [Evidence IDA] [PMID 23204190]; Kch1p 561473 KCH1 30036962 KCH1 Sugiyamaella lignohabitans Kch1p XP_018736321.1 558873 R 796027 CDS AWJ20_4793 30036963 565732..567987 D 1 NC_031673.1 Protein O-mannosyltransferase; transfers mannose residues from dolichyl phosphate-D-mannose to protein serine/threonine residues; appears to form homodimers in vivo and does not complex with other Pmt proteins; target for new antifungals; GO_component: GO:0097586 - dolichyl-phosphate-mannose-protein mannosyltransferase Pmt4p homodimer complex [Evidence IPI] [PMID 12551906]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_function: GO:0004169 - dolichyl-phosphate-mannose-protein mannosyltransferase activity [Evidence IEA]; GO_function: GO:0004169 - dolichyl-phosphate-mannose-protein mannosyltransferase activity [Evidence IDA,IMP] [PMID 21956107]; GO_function: GO:0004169 - dolichyl-phosphate-mannose-protein mannosyltransferase activity [Evidence IMP,ISS] [PMID 8585318]; GO_function: GO:0000030 - mannosyltransferase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA]; GO_process: GO:0006493 - protein O-linked glycosylation [Evidence IEA]; GO_process: GO:0006493 - protein O-linked glycosylation [Evidence IMP,ISS] [PMID 8585318]; GO_process: GO:0035269 - protein O-linked mannosylation [Evidence IMP] [PMID 18182384]; GO_process: GO:0035269 - protein O-linked mannosylation [Evidence IMP] [PMID 21231968]; GO_process: GO:1900101 - regulation of endoplasmic reticulum unfolded protein response [Evidence IGI] [PMID 21231968]; Pmt4p 567987 PMT4 30036963 PMT4 Sugiyamaella lignohabitans Pmt4p XP_018736322.1 565732 D 796027 CDS AWJ20_4794 30036964 569415..570353 D 1 NC_031673.1 Subunit of TFIIH and nucleotide excision repair factor 3 complexes; involved in transcription initiation, required for nucleotide excision repair; ring finger protein similar to mammalian CAK and TFIIH subunit; GO_component: GO:0070985 - TFIIK complex [Evidence IDA] [PMID 19818408]; GO_component: GO:0005675 - holo TFIIH complex [Evidence IDA] [PMID 19818408]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_function: GO:0000990 - core RNA polymerase binding transcription factor activity [Evidence IC] [PMID 19818408]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0006289 - nucleotide-excision repair [Evidence IMP] [PMID 10681587]; GO_process: GO:0070816 - phosphorylation of RNA polymerase II C-terminal domain [Evidence IDA] [PMID 19450536]; GO_process: GO:0070816 - phosphorylation of RNA polymerase II C-terminal domain [Evidence IDA] [PMID 19679665]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IDA] [PMID 19818408]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; TFIIH/NER complex subunit TFB3 570353 TFB3 30036964 TFB3 Sugiyamaella lignohabitans TFIIH/NER complex subunit TFB3 XP_018736323.1 569415 D 796027 CDS AWJ20_4795 30036965 571975..572736 D 1 NC_031673.1 Vacuolar protein; presumably functions within the endosomal-vacuolar trafficking pathway, affecting events that determine whether plasma membrane proteins are degraded or routed to the plasma membrane; RCR2 has a paralog, RCR1, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0000324 - fungal-type vacuole [Evidence IDA] [PMID 14562095]; GO_component: GO:0000324 - fungal-type vacuole [Evidence IDA] [PMID 17287526]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISS] [PMID 15590673]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0031982 - vesicle [Evidence IDA] [PMID 17287526]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IGI] [PMID 17287526]; Rcr2p 572736 RCR2 30036965 RCR2 Sugiyamaella lignohabitans Rcr2p XP_018736324.1 571975 D 796027 CDS AWJ20_4796 30036966 complement(573354..574247) D 1 NC_031673.1 GTP-cyclohydrolase I; catalyzes the first step in the folic acid biosynthetic pathway; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0005525 - GTP binding [Evidence IEA]; GO_function: GO:0003934 - GTP cyclohydrolase I activity [Evidence IEA,IEA]; GO_function: GO:0003934 - GTP cyclohydrolase I activity [Evidence IMP] [PMID 8573145]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0035998 - 7,8-dihydroneopterin 3'-triphosphate biosynthetic process [Evidence IEA]; GO_process: GO:0046656 - folic acid biosynthetic process [Evidence IEA]; GO_process: GO:0009396 - folic acid-containing compound biosynthetic process [Evidence IMP] [PMID 8573145]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0046654 - tetrahydrofolate biosynthetic process [Evidence IEA]; GTP cyclohydrolase I 574247 FOL2 30036966 FOL2 Sugiyamaella lignohabitans GTP cyclohydrolase I XP_018736325.1 573354 R 796027 CDS AWJ20_4797 30036967 complement(577671..578729) D 1 NC_031673.1 Cytoplasmic protein containing a zinc finger domain; sequence similarity to that of Type I J-proteins; computational analysis of large-scale protein-protein interaction data suggests a possible role in actin patch assembly; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11489916]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; Hua1p 578729 HUA1 30036967 HUA1 Sugiyamaella lignohabitans Hua1p XP_018736326.1 577671 R 796027 CDS AWJ20_4799 30036969 complement(586370..587032) D 1 NC_031673.1 uncharacterized protein 587032 30036969 AWJ20_4799 Sugiyamaella lignohabitans uncharacterized protein XP_018736327.1 586370 R 796027 CDS AWJ20_4802 30036974 complement(595567..597051) D 1 NC_031673.1 Gamma-aminobutyrate (GABA) transaminase; also known as 4-aminobutyrate aminotransferase; involved in the 4-aminobutyrate and glutamate degradation pathways; required for normal oxidative stress tolerance and nitrogen utilization; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 23740823]; GO_function: GO:0003867 - 4-aminobutyrate transaminase activity [Evidence IEA,IEA]; GO_function: GO:0003867 - 4-aminobutyrate transaminase activity [Evidence IMP] [PMID 3888627]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0030170 - pyridoxal phosphate binding [Evidence IEA]; GO_function: GO:0008483 - transaminase activity [Evidence IEA,IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0009450 - gamma-aminobutyric acid catabolic process [Evidence IMP] [PMID 3888627]; GO_process: GO:0009448 - gamma-aminobutyric acid metabolic process [Evidence IEA]; 4-aminobutyrate transaminase 597051 UGA1 30036974 UGA1 Sugiyamaella lignohabitans 4-aminobutyrate transaminase XP_018736328.1 595567 R 796027 CDS AWJ20_4803 30036975 complement(598643..601018) D 1 NC_031673.1 histone methyltransferase SET2 601018 SET2 30036975 SET2 Sugiyamaella lignohabitans histone methyltransferase SET2 XP_018736329.1 598643 R 796027 CDS AWJ20_4804 30036976 complement(601398..602336) D 1 NC_031673.1 uncharacterized protein 602336 30036976 AWJ20_4804 Sugiyamaella lignohabitans uncharacterized protein XP_018736330.1 601398 R 796027 CDS AWJ20_4805 30036977 complement(604056..604766) D 1 NC_031673.1 Protein that binds tRNA and methionyl- and glutamyl-tRNA synthetases; involved in tRNA delivery, stimulating catalysis, and ensuring localization; also binds quadruplex nucleic acids; protein abundance increases in response to DNA replication stress; methionyl-tRNA synthetase is Mes1p; glutamyl-tRNA synthetase is Gus1p; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11726524]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 15710377]; GO_component: GO:0017102 - methionyl glutamyl tRNA synthetase complex [Evidence IMP,IPI] [PMID 9659920]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0008047 - enzyme activator activity [Evidence IDA] [PMID 11069915]; GO_function: GO:0080025 - phosphatidylinositol-3,5-bisphosphate binding [Evidence IDA] [PMID 16343487]; GO_function: GO:0032266 - phosphatidylinositol-3-phosphate binding [Evidence IDA] [PMID 16343487]; GO_function: GO:0000049 - tRNA binding [Evidence IEA,IEA]; GO_function: GO:0000049 - tRNA binding [Evidence IMP,IPI] [PMID 11726524]; GO_process: GO:0051351 - positive regulation of ligase activity [Evidence IDA] [PMID 11069915]; GO_process: GO:0006418 - tRNA aminoacylation for protein translation [Evidence IMP] [PMID 9659920]; Arc1p 604766 ARC1 30036977 ARC1 Sugiyamaella lignohabitans Arc1p XP_018736331.1 604056 R 796027 CDS AWJ20_4806 30036978 605389..608388 D 1 NC_031673.1 uncharacterized protein 608388 30036978 AWJ20_4806 Sugiyamaella lignohabitans uncharacterized protein XP_018736332.1 605389 D 796027 CDS AWJ20_4807 30036979 complement(608637..609689) D 1 NC_031673.1 Subunit of TFIIH complex; involved in transcription initiation, similar to 34 kDa subunit of human TFIIH; interacts with Ssl1p; GO_component: GO:0000439 - core TFIIH complex [Evidence IEA]; GO_component: GO:0000439 - core TFIIH complex [Evidence IDA] [PMID 14500720]; GO_component: GO:0000439 - core TFIIH complex [Evidence IDA] [PMID 19818408]; GO_component: GO:0005675 - holo TFIIH complex [Evidence IDA] [PMID 19818408]; GO_component: GO:0000112 - nucleotide-excision repair factor 3 complex [Evidence IPI] [PMID 10681587]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0000990 - core RNA polymerase binding transcription factor activity [Evidence IC] [PMID 19818408]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_process: GO:0006281 - DNA repair [Evidence IEA]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0006289 - nucleotide-excision repair [Evidence IEA]; GO_process: GO:0006289 - nucleotide-excision repair [Evidence IMP] [PMID 10506223]; GO_process: GO:0070816 - phosphorylation of RNA polymerase II C-terminal domain [Evidence IDA] [PMID 19450536]; GO_process: GO:0070816 - phosphorylation of RNA polymerase II C-terminal domain [Evidence IDA] [PMID 19679665]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA,IEA]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IDA] [PMID 19818408]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; TFIIH/NER complex subunit TFB4 609689 TFB4 30036979 TFB4 Sugiyamaella lignohabitans TFIIH/NER complex subunit TFB4 XP_018736333.1 608637 R 796027 CDS AWJ20_4808 30036980 complement(610680..611036) D 1 NC_031673.1 Mitochondrial ribosomal protein of the large subunit; GO_component: GO:0005762 - mitochondrial large ribosomal subunit [Evidence IDA] [PMID 2060626]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IDA] [PMID 2060626]; GO_process: GO:0032543 - mitochondrial translation [Evidence IC] [PMID 2060626]; GO_process: GO:0030435 - sporulation resulting in formation of a cellular spore [Evidence IEA]; mitochondrial 54S ribosomal protein YmL37 611036 MRPL37 30036980 MRPL37 Sugiyamaella lignohabitans mitochondrial 54S ribosomal protein YmL37 XP_018736334.1 610680 R 796027 CDS AWJ20_4809 30036981 614858..617515 D 1 NC_031673.1 Integral plasma membrane protein; involved in the synthesis of the glycosylphosphatidylinositol (GPI) core structure; mutations affect cell wall integrity; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0030176 - integral component of endoplasmic reticulum membrane [Evidence IDA] [PMID 10329735]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0005887 - integral component of plasma membrane [Evidence IDA] [PMID 10329735]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0051377 - mannose-ethanolamine phosphotransferase activity [Evidence IMP] [PMID 15452134]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IMP] [PMID 10329735]; GO_process: GO:0006506 - GPI anchor biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0006506 - GPI anchor biosynthetic process [Evidence IMP] [PMID 10329735]; GO_process: GO:0006506 - GPI anchor biosynthetic process [Evidence IMP] [PMID 15452134]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; Las21p 617515 LAS21 30036981 LAS21 Sugiyamaella lignohabitans Las21p XP_018736335.1 614858 D 796027 CDS AWJ20_4810 30036983 619169..620080 D 1 NC_031673.1 Subunit (90 kDa) of TFIID and SAGA complexes; involved in RNA polymerase II transcription initiation and in chromatin modification; GO_component: GO:0000124 - SAGA complex [Evidence IDA] [PMID 9674426]; GO_component: GO:0046695 - SLIK (SAGA-like) complex [Evidence IDA] [PMID 12446794]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005669 - transcription factor TFIID complex [Evidence IDA] [PMID 10788514]; GO_component: GO:0005669 - transcription factor TFIID complex [Evidence IDA] [PMID 15448131]; GO_function: GO:0001075 - RNA polymerase II core promoter sequence-specific DNA binding transcription factor activity involved in preinitiation complex assembly [Evidence IC] [PMID 15448131]; GO_function: GO:0003682 - chromatin binding [Evidence IDA] [PMID 12600943]; GO_function: GO:0032947 - protein complex scaffold [Evidence IMP] [PMID 11585915]; GO_function: GO:0043130 - ubiquitin binding [Evidence IDA] [PMID 21070969]; GO_process: GO:0051123 - RNA polymerase II transcriptional preinitiation complex assembly [Evidence IC] [PMID 10788514]; GO_process: GO:0016568 - chromatin modification [Evidence IDA] [PMID 9674426]; GO_process: GO:0016573 - histone acetylation [Evidence IDA] [PMID 9674426]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA,IEA]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IDA] [PMID 12138208]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IDA] [PMID 15448131]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Taf5p 620080 TAF5 30036983 TAF5 Sugiyamaella lignohabitans Taf5p XP_018736336.1 619169 D 796027 CDS AWJ20_4811 30036984 620369..621115 D 1 NC_031673.1 Mitochondrial ribosomal protein of the large subunit; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0005762 - mitochondrial large ribosomal subunit [Evidence IDA] [PMID 1544898]; GO_component: GO:0005762 - mitochondrial large ribosomal subunit [Evidence IDA] [PMID 9151978]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA,IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IDA] [PMID 1544898]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IDA] [PMID 9151978]; GO_process: GO:0032543 - mitochondrial translation [Evidence IMP] [PMID 1544898]; GO_process: GO:0032543 - mitochondrial translation [Evidence IC] [PMID 9151978]; GO_process: GO:0006412 - translation [Evidence IEA]; mitochondrial 54S ribosomal protein YmL41 621115 MRP20 30036984 MRP20 Sugiyamaella lignohabitans mitochondrial 54S ribosomal protein YmL41 XP_018736337.1 620369 D 796027 CDS AWJ20_4812 30036985 complement(join(621264..624717,625288..625349)) D 1 NC_031673.1 uncharacterized protein 625349 30036985 AWJ20_4812 Sugiyamaella lignohabitans uncharacterized protein XP_018736338.1 621264 R 796027 CDS AWJ20_4813 30036986 625102..626079 D 1 NC_031673.1 uncharacterized protein 626079 30036986 AWJ20_4813 Sugiyamaella lignohabitans uncharacterized protein XP_018736339.1 625102 D 796027 CDS AWJ20_4814 30036987 627019..628272 D 1 NC_031673.1 Putative mannosyltransferase involved in protein glycosylation; member of the KRE2/MNT1 mannosyltransferase family of type II membrane proteins with a short cytoplasmic N-terminus, a membrane-spanning region and a highly conserved catalytic lumenal domain; GO_component: GO:0005794 - Golgi apparatus [Evidence ISS] [PMID 7975899]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA,IEA]; GO_function: GO:0000030 - mannosyltransferase activity [Evidence IEA]; GO_function: GO:0000030 - mannosyltransferase activity [Evidence ISS] [PMID 7975899]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA]; GO_process: GO:0097502 - mannosylation [Evidence IEA]; GO_process: GO:0006487 - protein N-linked glycosylation [Evidence ISS] [PMID 7975899]; GO_process: GO:0006486 - protein glycosylation [Evidence IEA]; Ktr4p 628272 KTR4 30036987 KTR4 Sugiyamaella lignohabitans Ktr4p XP_018736340.1 627019 D 796027 CDS AWJ20_4815 30036988 complement(628441..629946) D 1 NC_031673.1 Actin cortical patch component; interacts with the actin depolymerizing factor cofilin; inhibits elongation of aged ADP-actin filaments decorated with cofilin to maintain a high level of assembly-competent actin species; required to restrict cofilin localization to cortical patches; contains WD repeats; protein increases in abundance and relocalizes from cytoplasm to plasma membrane upon DNA replication stress; GO_component: GO:0030479 - actin cortical patch [Evidence IEA]; GO_component: GO:0030479 - actin cortical patch [Evidence IDA] [PMID 10366597]; GO_component: GO:0005884 - actin filament [Evidence IDA] [PMID 23333351]; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA,IEA]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 19053807]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11914276]; GO_function: GO:0003779 - actin binding [Evidence IEA]; GO_function: GO:0003779 - actin binding [Evidence IPI] [PMID 7719850]; GO_process: GO:0030042 - actin filament depolymerization [Evidence IGI,IPI] [PMID 10366597]; GO_process: GO:0051016 - barbed-end actin filament capping [Evidence IMP] [PMID 23333351]; GO_process: GO:0006970 - response to osmotic stress [Evidence TAS] [PMID 10652251]; Aip1p 629946 AIP1 30036988 AIP1 Sugiyamaella lignohabitans Aip1p XP_018736341.1 628441 R 796027 CDS AWJ20_4816 30036989 complement(634464..634883) D 1 NC_031673.1 Allantoate permease; ureidosuccinate permease; also transports dipeptides, though with lower affinity than for allantoate and ureidosuccinate; expression is constitutive but sensitive to nitrogen catabolite repression; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IMP,ISS] [PMID 3275614]; GO_function: GO:0015124 - allantoate transmembrane transporter activity [Evidence IMP,ISS] [PMID 3275614]; GO_function: GO:0042936 - dipeptide transporter activity [Evidence IMP] [PMID 16429164]; GO_function: GO:0042936 - dipeptide transporter activity [Evidence IGI,IMP] [PMID 17693598]; GO_function: GO:0005215 - transporter activity [Evidence IEA]; GO_process: GO:0015719 - allantoate transport [Evidence IMP] [PMID 3275614]; GO_process: GO:0042938 - dipeptide transport [Evidence IMP] [PMID 16429164]; GO_process: GO:0042938 - dipeptide transport [Evidence IGI,IMP] [PMID 17693598]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; GO_process: GO:0042939 - tripeptide transport [Evidence IMP] [PMID 16429164]; allantoate permease 634883 DAL5 30036989 DAL5 Sugiyamaella lignohabitans allantoate permease XP_018736342.1 634464 R 796027 CDS AWJ20_4817 30036990 complement(634933..636057) D 1 NC_031673.1 Allantoate permease; ureidosuccinate permease; also transports dipeptides, though with lower affinity than for allantoate and ureidosuccinate; expression is constitutive but sensitive to nitrogen catabolite repression; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IMP,ISS] [PMID 3275614]; GO_function: GO:0015124 - allantoate transmembrane transporter activity [Evidence IMP,ISS] [PMID 3275614]; GO_function: GO:0042936 - dipeptide transporter activity [Evidence IMP] [PMID 16429164]; GO_function: GO:0042936 - dipeptide transporter activity [Evidence IGI,IMP] [PMID 17693598]; GO_function: GO:0005215 - transporter activity [Evidence IEA]; GO_process: GO:0015719 - allantoate transport [Evidence IMP] [PMID 3275614]; GO_process: GO:0042938 - dipeptide transport [Evidence IMP] [PMID 16429164]; GO_process: GO:0042938 - dipeptide transport [Evidence IGI,IMP] [PMID 17693598]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; GO_process: GO:0042939 - tripeptide transport [Evidence IMP] [PMID 16429164]; allantoate permease 636057 DAL5 30036990 DAL5 Sugiyamaella lignohabitans allantoate permease XP_018736343.1 634933 R 796027 CDS AWJ20_4818 30036991 complement(637482..638501) D 1 NC_031673.1 Allantoate permease; ureidosuccinate permease; also transports dipeptides, though with lower affinity than for allantoate and ureidosuccinate; expression is constitutive but sensitive to nitrogen catabolite repression; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IMP,ISS] [PMID 3275614]; GO_function: GO:0015124 - allantoate transmembrane transporter activity [Evidence IMP,ISS] [PMID 3275614]; GO_function: GO:0042936 - dipeptide transporter activity [Evidence IMP] [PMID 16429164]; GO_function: GO:0042936 - dipeptide transporter activity [Evidence IGI,IMP] [PMID 17693598]; GO_function: GO:0005215 - transporter activity [Evidence IEA]; GO_process: GO:0015719 - allantoate transport [Evidence IMP] [PMID 3275614]; GO_process: GO:0042938 - dipeptide transport [Evidence IMP] [PMID 16429164]; GO_process: GO:0042938 - dipeptide transport [Evidence IGI,IMP] [PMID 17693598]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; GO_process: GO:0042939 - tripeptide transport [Evidence IMP] [PMID 16429164]; allantoate permease 638501 DAL5 30036991 DAL5 Sugiyamaella lignohabitans allantoate permease XP_018736344.1 637482 R 796027 CDS AWJ20_4819 30036992 641504..642994 D 1 NC_031673.1 Nucleolar protein; component of the small subunit (SSU) processome containing the U3 snoRNA that is involved in processing of pre-18S rRNA; GO_component: GO:0030686 - 90S preribosome [Evidence IDA] [PMID 12150911]; GO_component: GO:0005730 - nucleolus [Evidence IEA,IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 12068309]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0033553 - rDNA heterochromatin [Evidence IDA] [PMID 15489292]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0032040 - small-subunit processome [Evidence IDA] [PMID 12068309]; GO_component: GO:0034455 - t-UTP complex [Evidence IDA] [PMID 17515605]; GO_function: GO:0030515 - snoRNA binding [Evidence IPI] [PMID 12068309]; GO_process: GO:0000462 - maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 12068309]; GO_process: GO:0045943 - positive regulation of transcription from RNA polymerase I promoter [Evidence IMP] [PMID 15489292]; GO_process: GO:0006364 - rRNA processing [Evidence IEA,IEA]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Utp15p 642994 UTP15 30036992 UTP15 Sugiyamaella lignohabitans Utp15p XP_018736345.1 641504 D 796027 CDS AWJ20_4820 30036994 complement(643490..644761) D 1 NC_031673.1 uncharacterized protein 644761 30036994 AWJ20_4820 Sugiyamaella lignohabitans uncharacterized protein XP_018736346.1 643490 R 796027 CDS AWJ20_4821 30036995 645086..647341 D 1 NC_031673.1 Mitochondrial protein required for the stability of Oli1p (Atp9p) mRNA; also required for the Oli1p ring formation; YMR098C is not an essential gene; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IDA] [PMID 18216280]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0048255 - mRNA stabilization [Evidence IEA]; GO_process: GO:0048255 - mRNA stabilization [Evidence IMP] [PMID 18216280]; GO_process: GO:0033615 - mitochondrial proton-transporting ATP synthase complex assembly [Evidence IMP] [PMID 18216280]; Atp25p 647341 ATP25 30036995 ATP25 Sugiyamaella lignohabitans Atp25p XP_018736347.1 645086 D 796027 CDS AWJ20_4822 30036996 648028..648597 D 1 NC_031673.1 uncharacterized protein 648597 30036996 AWJ20_4822 Sugiyamaella lignohabitans uncharacterized protein XP_018736348.1 648028 D 796027 CDS AWJ20_4823 30036997 complement(648892..649743) D 1 NC_031673.1 Protein that plays a role in modification of tRNA wobble nucleosides; protein plays role in tRNA wobble nucleoside modification with Elongator complex; involved in sensitivity to G1 arrest induced by zymocin; interacts with chromatin throughout the genome; also interacts with Cdc19p; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 12139626]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 12139626]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0003682 - chromatin binding [Evidence IDA] [PMID 15772087]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0016049 - cell growth [Evidence IPI] [PMID 12139626]; GO_process: GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence IGI] [PMID 15772087]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0002098 - tRNA wobble uridine modification [Evidence IMP] [PMID 18755837]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Kti12p 649743 KTI12 30036997 KTI12 Sugiyamaella lignohabitans Kti12p XP_018736349.1 648892 R 796027 CDS AWJ20_4824 30036998 650295..651395 D 1 NC_031673.1 Putative GTPase peripheral to the mitochondrial inner membrane; essential for respiratory competence, likely functions in assembly of the large ribosomal subunit, has homologs in plants and animals; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IDA] [PMID 12808030]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0005525 - GTP binding [Evidence IEA,IEA]; GO_function: GO:0003924 - GTPase activity [Evidence ISA] [PMID 12808030]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0032543 - mitochondrial translation [Evidence IGI,IMP] [PMID 12808030]; putative GTPase MTG1 651395 MTG1 30036998 MTG1 Sugiyamaella lignohabitans putative GTPase MTG1 XP_018736350.1 650295 D 796027 CDS AWJ20_4825 30036999 654564..654869 D 1 NC_031673.1 nucleoporin POM33 654869 POM33 30036999 POM33 Sugiyamaella lignohabitans nucleoporin POM33 XP_018736351.1 654564 D 796027 CDS AWJ20_4826 30037000 655610..656128 D 1 NC_031673.1 Acireductone dioxygenease involved in the methionine salvage pathway; ortholog of human MTCBP-1; transcribed as polycistronic mRNA with YMR010W and regulated post-transcriptionally by RNase III (Rnt1p) cleavage; ADI1 mRNA is induced in heat shock conditions; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0010308 - acireductone dioxygenase (Ni2+-requiring) activity [Evidence IMP] [PMID 15938715]; GO_function: GO:0010309 - acireductone dioxygenase [iron(II)-requiring] activity [Evidence IEA,IEA,IEA]; GO_function: GO:0051213 - dioxygenase activity [Evidence IEA]; GO_function: GO:0005506 - iron ion binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_process: GO:0019509 - L-methionine salvage from methylthioadenosine [Evidence IEA,IEA,IEA]; GO_process: GO:0019509 - L-methionine salvage from methylthioadenosine [Evidence IGI,IMP,ISS] [PMID 15938715]; GO_process: GO:0019509 - L-methionine salvage from methylthioadenosine [Evidence IMP] [PMID 18625006]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0009086 - methionine biosynthetic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; acireductone dioxygenase (Ni2+-requiring) 656128 ADI1 30037000 ADI1 Sugiyamaella lignohabitans acireductone dioxygenase (Ni2+-requiring) XP_018736352.1 655610 D 796027 CDS AWJ20_4827 30037001 663078..665963 D 1 NC_031673.1 Component of the GARP (Golgi-associated retrograde protein) complex; GARP is required for the recycling of proteins from endosomes to the late Golgi, and for mitosis after DNA damage induced checkpoint arrest; required for vacuolar protein sorting; members of the GARP complex are Vps51p-Vps52p-Vps53p-Vps54p; GO_component: GO:0000938 - GARP complex [Evidence IPI] [PMID 10637310]; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA,IEA]; GO_component: GO:0005794 - Golgi apparatus [Evidence IDA] [PMID 10637310]; GO_component: GO:0005794 - Golgi apparatus [Evidence TAS] [PMID 11689439]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005768 - endosome [Evidence IEA]; GO_component: GO:0010008 - endosome membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006896 - Golgi to vacuole transport [Evidence IMP] [PMID 10637310]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0042147 - retrograde transport, endosome to Golgi [Evidence IDA] [PMID 12686613]; GO_process: GO:0006810 - transport [Evidence IEA]; Vps53p 665963 VPS53 30037001 VPS53 Sugiyamaella lignohabitans Vps53p XP_018736353.1 663078 D 796027 CDS AWJ20_4828 30037002 complement(666271..667101) D 1 NC_031673.1 Subunit of the RES complex; RES complex is required for nuclear retention of unspliced pre-mRNAs; acts in the same pathway as Pml39p and Mlp1p; GO_component: GO:0070274 - RES complex [Evidence IDA] [PMID 15565172]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008380 - RNA splicing [Evidence IEA]; GO_process: GO:0006406 - mRNA export from nucleus [Evidence IMP] [PMID 15565172]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0000398 - mRNA splicing, via spliceosome [Evidence IDA] [PMID 15565172]; GO_process: GO:0051237 - maintenance of RNA location [Evidence IMP] [PMID 16162818]; Pml1p 667101 PML1 30037002 PML1 Sugiyamaella lignohabitans Pml1p XP_018736354.1 666271 R 796027 CDS AWJ20_4829 30037003 667803..670199 D 1 NC_031673.1 DEAD box RNA helicase; high-copy number suppression of a U14 snoRNA processing mutant suggests an involvement in 18S rRNA synthesis; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IC] [PMID 16209945]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004004 - ATP-dependent RNA helicase activity [Evidence IMP] [PMID 16209945]; GO_function: GO:0004004 - ATP-dependent RNA helicase activity [Evidence IDA] [PMID 23153376]; GO_function: GO:0008026 - ATP-dependent helicase activity [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0008186 - RNA-dependent ATPase activity [Evidence IDA] [PMID 18975973]; GO_function: GO:0008186 - RNA-dependent ATPase activity [Evidence IDA] [PMID 23153376]; GO_function: GO:0004386 - helicase activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0006364 - rRNA processing [Evidence IMP] [PMID 16209945]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; RNA-dependent ATPase HCA4 670199 HCA4 30037003 HCA4 Sugiyamaella lignohabitans RNA-dependent ATPase HCA4 XP_018736355.1 667803 D 796027 CDS AWJ20_4830 30037005 671459..672370 D 1 NC_031673.1 DNA 3'-phosphatase; functions in repair of endogenous damage of double-stranded DNA, activity is specific for removal of 3' phosphates at strand breaks; similar to the l-2-haloacid dehalogenase superfamily; homolog of human polynucleotide kinase/3'-phosphatase; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IC] [PMID 11278831]; GO_component: GO:0005634 - nucleus [Evidence IC] [PMID 15222769]; GO_function: GO:0003690 - double-stranded DNA binding [Evidence IDA] [PMID 15222769]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046403 - polynucleotide 3'-phosphatase activity [Evidence IEA]; GO_function: GO:0046403 - polynucleotide 3'-phosphatase activity [Evidence IDA] [PMID 11278831]; GO_function: GO:0046403 - polynucleotide 3'-phosphatase activity [Evidence IMP] [PMID 15222769]; GO_process: GO:0006281 - DNA repair [Evidence IEA]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0006302 - double-strand break repair [Evidence IGI,IMP] [PMID 11585902]; GO_process: GO:0098506 - polynucleotide 3' dephosphorylation [Evidence IEA]; Tpp1p 672370 TPP1 30037005 TPP1 Sugiyamaella lignohabitans Tpp1p XP_018736356.1 671459 D 796027 CDS AWJ20_4831 30037006 complement(672801..673370) D 1 NC_031673.1 Ribosomal 60S subunit protein L9B; homologous to mammalian ribosomal protein L9 and bacterial L6; RPL9B has a paralog, RPL9A, that arose from a single-locus duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0022625 - cytosolic large ribosomal subunit [Evidence IDA] [PMID 18782943]; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA,IEA]; GO_function: GO:0019843 - rRNA binding [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IDA] [PMID 18782943]; GO_process: GO:0002181 - cytoplasmic translation [Evidence IDA] [PMID 18782943]; GO_process: GO:0006412 - translation [Evidence IEA]; ribosomal 60S subunit protein L9B 673370 RPL9B 30037006 RPL9B Sugiyamaella lignohabitans ribosomal 60S subunit protein L9B XP_018736357.1 672801 R 796027 CDS AWJ20_4832 30037007 673083..673424 D 1 NC_031673.1 uncharacterized protein 673424 30037007 AWJ20_4832 Sugiyamaella lignohabitans uncharacterized protein XP_018736358.1 673083 D 796027 CDS AWJ20_4833 30037008 674426..675199 D 1 NC_031673.1 uncharacterized protein 675199 30037008 AWJ20_4833 Sugiyamaella lignohabitans uncharacterized protein XP_018736359.1 674426 D 796027 CDS AWJ20_4834 30037009 complement(675471..677702) D 1 NC_031673.1 uncharacterized protein 677702 30037009 AWJ20_4834 Sugiyamaella lignohabitans uncharacterized protein XP_018736360.1 675471 R 796027 CDS AWJ20_4835 30037010 682334..683296 D 1 NC_031673.1 Guanine nucleotide exchange factor for Gpa1p; amplifies G protein signaling; subunit of the GET complex, which is involved in Golgi to ER trafficking and insertion of proteins into the ER membrane; has low-level ATPase activity; protein abundance increases in response to DNA replication stress; GO_component: GO:0043529 - GET complex [Evidence IEA]; GO_component: GO:0043529 - GET complex [Evidence IPI] [PMID 16269340]; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA,IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 14562095]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA,IEA]; GO_function: GO:0016887 - ATPase activity [Evidence IEA]; GO_function: GO:0016887 - ATPase activity [Evidence IDA] [PMID 12680698]; GO_function: GO:0005085 - guanyl-nucleotide exchange factor activity [Evidence IDA] [PMID 18261907]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0000750 - pheromone-dependent signal transduction involved in conjugation with cellular fusion [Evidence IMP] [PMID 18261907]; GO_process: GO:0006620 - posttranslational protein targeting to membrane [Evidence IDA] [PMID 20850366]; GO_process: GO:0045048 - protein insertion into ER membrane [Evidence IEA]; GO_process: GO:0045048 - protein insertion into ER membrane [Evidence IMP] [PMID 18724936]; GO_process: GO:0046685 - response to arsenic-containing substance [Evidence IEA]; GO_process: GO:0009408 - response to heat [Evidence IMP] [PMID 12680698]; GO_process: GO:0010038 - response to metal ion [Evidence IMP] [PMID 12680698]; GO_process: GO:0006890 - retrograde vesicle-mediated transport, Golgi to ER [Evidence IDA,IGI,IMP] [PMID 16269340]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IEA]; guanine nucleotide exchange factor GET3 683296 GET3 30037010 GET3 Sugiyamaella lignohabitans guanine nucleotide exchange factor GET3 XP_018736361.1 682334 D 796027 CDS AWJ20_4836 30037011 complement(683565..685508) D 1 NC_031673.1 uncharacterized protein 685508 30037011 AWJ20_4836 Sugiyamaella lignohabitans uncharacterized protein XP_018736362.1 683565 R 796027 CDS AWJ20_4837 30037012 complement(686796..688427) D 1 NC_031673.1 Endosomal subunit of membrane-associated retromer complex; required for retrograde transport; receptor that recognizes retrieval signals on cargo proteins, forms subcomplex with Vps26p and Vps29p that selects cargo proteins for retrieval; interacts with Ypt7p; GO_component: GO:0005768 - endosome [Evidence IPI] [PMID 9700157]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 22593205]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0030904 - retromer complex [Evidence IEA]; GO_component: GO:0030904 - retromer complex [Evidence IMP,IPI] [PMID 9700157]; GO_component: GO:0030906 - retromer complex, inner shell [Evidence IPI] [PMID 9700157]; GO_function: GO:0008565 - protein transporter activity [Evidence IMP,IPI] [PMID 9700157]; GO_process: GO:0045053 - protein retention in Golgi apparatus [Evidence IMP] [PMID 8649377]; GO_process: GO:0015031 - protein transport [Evidence IEA,IEA]; GO_process: GO:0042147 - retrograde transport, endosome to Golgi [Evidence IEA]; GO_process: GO:0042147 - retrograde transport, endosome to Golgi [Evidence IPI] [PMID 9700157]; GO_process: GO:0006810 - transport [Evidence IEA]; Vps35p 688427 VPS35 30037012 VPS35 Sugiyamaella lignohabitans Vps35p XP_018736363.1 686796 R 796027 CDS AWJ20_4838 30037013 complement(join(688514..688525,688614..689552)) D 1 NC_031673.1 Endosomal subunit of membrane-associated retromer complex; required for retrograde transport; receptor that recognizes retrieval signals on cargo proteins, forms subcomplex with Vps26p and Vps29p that selects cargo proteins for retrieval; interacts with Ypt7p; GO_component: GO:0005768 - endosome [Evidence IPI] [PMID 9700157]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 22593205]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0030904 - retromer complex [Evidence IEA]; GO_component: GO:0030904 - retromer complex [Evidence IMP,IPI] [PMID 9700157]; GO_component: GO:0030906 - retromer complex, inner shell [Evidence IPI] [PMID 9700157]; GO_function: GO:0008565 - protein transporter activity [Evidence IMP,IPI] [PMID 9700157]; GO_process: GO:0045053 - protein retention in Golgi apparatus [Evidence IMP] [PMID 8649377]; GO_process: GO:0015031 - protein transport [Evidence IEA,IEA]; GO_process: GO:0042147 - retrograde transport, endosome to Golgi [Evidence IEA]; GO_process: GO:0042147 - retrograde transport, endosome to Golgi [Evidence IPI] [PMID 9700157]; GO_process: GO:0006810 - transport [Evidence IEA]; Vps35p 689552 VPS35 30037013 VPS35 Sugiyamaella lignohabitans Vps35p XP_018736364.1 688514 R 796027 CDS AWJ20_4839 30037014 complement(692048..694123) D 1 NC_031673.1 uncharacterized protein 694123 30037014 AWJ20_4839 Sugiyamaella lignohabitans uncharacterized protein XP_018736365.1 692048 R 796027 CDS AWJ20_4840 30037016 694829..696511 D 1 NC_031673.1 hypothetical protein that associates with ribosomes; has a putative RNA binding domain; in mammals the corresponding protein, eIF2D, has been shown to possess translation initiation factor activity; GO_component: GO:0005840 - ribosome [Evidence IDA] [PMID 16702403]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence ISS] [PMID 10093218]; GO_function: GO:0003743 - translation initiation factor activity [Evidence IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0006413 - translational initiation [Evidence IEA]; Tma64p 696511 TMA64 30037016 TMA64 Sugiyamaella lignohabitans Tma64p XP_018736366.1 694829 D 796027 CDS AWJ20_4841 30037017 complement(696676..698139) D 1 NC_031673.1 Transmembrane protein; subunit of the glycosylphosphatidylinositol transamidase complex that adds GPIs to newly synthesized proteins; human PIG-S homolog; GO_component: GO:0042765 - GPI-anchor transamidase complex [Evidence IEA]; GO_component: GO:0042765 - GPI-anchor transamidase complex [Evidence IDA] [PMID 15939668]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 15075373]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IDA] [PMID 15939668]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0003923 - GPI-anchor transamidase activity [Evidence IMP,ISS] [PMID 11483512]; GO_process: GO:0006506 - GPI anchor biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0016255 - attachment of GPI anchor to protein [Evidence IEA]; GO_process: GO:0016255 - attachment of GPI anchor to protein [Evidence IMP,ISS] [PMID 11483512]; Gpi17p 698139 GPI17 30037017 GPI17 Sugiyamaella lignohabitans Gpi17p XP_018736367.1 696676 R 796027 CDS AWJ20_4842 30037018 698456..699388 D 1 NC_031673.1 Mitochondrial ribosomal protein of the large subunit; GO_component: GO:0015934 - large ribosomal subunit [Evidence IEA]; GO_component: GO:0005762 - mitochondrial large ribosomal subunit [Evidence IPI] [PMID 12392552]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IPI] [PMID 12392552]; GO_process: GO:0032543 - mitochondrial translation [Evidence IC] [PMID 12392552]; GO_process: GO:0006412 - translation [Evidence IEA]; mitochondrial 54S ribosomal protein MRPL1 699388 MRPL1 30037018 MRPL1 Sugiyamaella lignohabitans mitochondrial 54S ribosomal protein MRPL1 XP_018736368.1 698456 D 796027 CDS AWJ20_4843 30037019 703912..704730 D 1 NC_031673.1 uncharacterized protein 704730 30037019 AWJ20_4843 Sugiyamaella lignohabitans uncharacterized protein XP_018736369.1 703912 D 796027 CDS AWJ20_4844 30037020 705691..707355 D 1 NC_031673.1 Phosphoglucomutase; catalyzes the conversion from glucose-1-phosphate to glucose-6-phosphate, which is a key step in hexose metabolism; functions as the acceptor for a Glc-phosphotransferase; protein abundance increases in response to DNA replication stress; PGM2 has a paralog, PGM1, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 8385141]; GO_component: GO:0005829 - cytosol [Evidence IBA]; GO_function: GO:0016868 - intramolecular transferase activity, phosphotransferases [Evidence IEA]; GO_function: GO:0016853 - isomerase activity [Evidence IEA]; GO_function: GO:0000287 - magnesium ion binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004614 - phosphoglucomutase activity [Evidence IEA]; GO_function: GO:0004614 - phosphoglucomutase activity [Evidence IMP] [PMID 13887540]; GO_function: GO:0004614 - phosphoglucomutase activity [Evidence IMP] [PMID 2138705]; GO_function: GO:0004614 - phosphoglucomutase activity [Evidence IGI,IMP,ISS] [PMID 8119301]; GO_process: GO:0006011 - UDP-glucose metabolic process [Evidence IGI] [PMID 9252577]; GO_process: GO:0005975 - carbohydrate metabolic process [Evidence IEA,IEA]; GO_process: GO:0006874 - cellular calcium ion homeostasis [Evidence IMP] [PMID 10681519]; GO_process: GO:0006874 - cellular calcium ion homeostasis [Evidence IGI,IMP] [PMID 15252028]; GO_process: GO:0030003 - cellular cation homeostasis [Evidence IMP] [PMID 15164360]; GO_process: GO:0019388 - galactose catabolic process [Evidence IMP] [PMID 13887540]; GO_process: GO:0019388 - galactose catabolic process [Evidence IMP] [PMID 14264884]; GO_process: GO:0019388 - galactose catabolic process [Evidence IGI,IMP] [PMID 8119301]; GO_process: GO:0019255 - glucose 1-phosphate metabolic process [Evidence IMP] [PMID 10681519]; GO_process: GO:0019255 - glucose 1-phosphate metabolic process [Evidence IGI,IMP,ISS] [PMID 8119301]; GO_process: GO:0051156 - glucose 6-phosphate metabolic process [Evidence ISS] [PMID 8119301]; GO_process: GO:0006006 - glucose metabolic process [Evidence IEA]; GO_process: GO:0005978 - glycogen biosynthetic process [Evidence IGI] [PMID 9252577]; GO_process: GO:0005992 - trehalose biosynthetic process [Evidence IGI] [PMID 9252577]; phosphoglucomutase PGM2 707355 PGM2 30037020 PGM2 Sugiyamaella lignohabitans phosphoglucomutase PGM2 XP_018736370.1 705691 D 796027 CDS AWJ20_4845 30037021 complement(707575..709068) D 1 NC_031673.1 Subunit of the telomeric Ku complex (Yku70p-Yku80p); involved in telomere length maintenance, structure and telomere position effect; required for localization of telomerase ribonucleoprotein via interaction with the TLC1 guide RNA; relocates to sites of double-strand cleavage to promote nonhomologous end joining during DSB repair; GO_component: GO:0043564 - Ku70:Ku80 complex [Evidence IEA]; GO_component: GO:0043564 - Ku70:Ku80 complex [Evidence IDA] [PMID 8754818]; GO_component: GO:0005694 - chromosome [Evidence IEA]; GO_component: GO:0000781 - chromosome, telomeric region [Evidence IEA,IEA]; GO_component: GO:0000790 - nuclear chromatin [Evidence TAS] [PMID 10367891]; GO_component: GO:0005724 - nuclear telomeric heterochromatin [Evidence TAS] [PMID 12080091]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0004003 - ATP-dependent DNA helicase activity [Evidence IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0003677 - DNA binding [Evidence IDA] [PMID 16166630]; GO_function: GO:0003723 - RNA binding [Evidence IDA] [PMID 12975323]; GO_function: GO:0003684 - damaged DNA binding [Evidence IEA]; GO_function: GO:0003684 - damaged DNA binding [Evidence TAS] [PMID 10367891]; GO_function: GO:0004386 - helicase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0042162 - telomeric DNA binding [Evidence IEA]; GO_function: GO:0042162 - telomeric DNA binding [Evidence IDA] [PMID 17656141]; GO_process: GO:0032508 - DNA duplex unwinding [Evidence IEA]; GO_process: GO:0006310 - DNA recombination [Evidence IEA,IEA]; GO_process: GO:0006281 - DNA repair [Evidence IEA]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0006333 - chromatin assembly or disassembly [Evidence IDA] [PMID 11553718]; GO_process: GO:0006342 - chromatin silencing [Evidence IDA,IMP] [PMID 9501103]; GO_process: GO:0007535 - donor selection [Evidence IDA,IMP] [PMID 16166630]; GO_process: GO:0007535 - donor selection [Evidence IGI,IMP] [PMID 16809780]; GO_process: GO:0000724 - double-strand break repair via homologous recombination [Evidence IMP] [PMID 11016833]; GO_process: GO:0006303 - double-strand break repair via nonhomologous end joining [Evidence IEA]; GO_process: GO:0034502 - protein localization to chromosome [Evidence IGI] [PMID 18716325]; GO_process: GO:0000723 - telomere maintenance [Evidence IEA]; GO_process: GO:0000723 - telomere maintenance [Evidence IMP] [PMID 10818099]; Yku80p 709068 YKU80 30037021 YKU80 Sugiyamaella lignohabitans Yku80p XP_018736371.1 707575 R 796027 CDS AWJ20_4846 30037022 complement(join(709547..709550,709779..709792,710159..711244)) D 1 NC_031673.1 Galactose-1-phosphate uridyl transferase; synthesizes glucose-1-phosphate and UDP-galactose from UDP-D-glucose and alpha-D-galactose-1-phosphate in the second step of galactose catabolism; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 10993714]; GO_function: GO:0008108 - UDP-glucose:hexose-1-phosphate uridylyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0008108 - UDP-glucose:hexose-1-phosphate uridylyltransferase activity [Evidence IMP] [PMID 14158615]; GO_function: GO:0008108 - UDP-glucose:hexose-1-phosphate uridylyltransferase activity [Evidence IDA] [PMID 387754]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016779 - nucleotidyltransferase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0005975 - carbohydrate metabolic process [Evidence IEA]; GO_process: GO:0033499 - galactose catabolic process via UDP-galactose [Evidence IMP] [PMID 14158615]; GO_process: GO:0033499 - galactose catabolic process via UDP-galactose [Evidence IDA] [PMID 387754]; GO_process: GO:0006012 - galactose metabolic process [Evidence IEA,IEA,IEA]; UDP-glucose:hexose-1-phosphate uridylyltransferase 711244 GAL7 30037022 GAL7 Sugiyamaella lignohabitans UDP-glucose:hexose-1-phosphate uridylyltransferase XP_018736372.1 709547 R 796027 CDS AWJ20_4847 30037023 complement(711932..712681) D 1 NC_031673.1 Subunit of the GINS complex (Sld5p, Psf1p, Psf2p, Psf3p); complex is localized to DNA replication origins and implicated in assembly of the DNA replication machinery; GO_component: GO:0031261 - DNA replication preinitiation complex [Evidence IGI,IMP] [PMID 12730134]; GO_component: GO:0000811 - GINS complex [Evidence IPI] [PMID 12730134]; GO_component: GO:0000811 - GINS complex [Evidence IPI] [PMID 12768207]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0031298 - replication fork protection complex [Evidence IDA] [PMID 16531994]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006260 - DNA replication [Evidence IEA]; GO_process: GO:0006261 - DNA-dependent DNA replication [Evidence IMP] [PMID 12730134]; GO_process: GO:0006261 - DNA-dependent DNA replication [Evidence IMP] [PMID 12768207]; GO_process: GO:0000727 - double-strand break repair via break-induced replication [Evidence IMP] [PMID 20516198]; Sld5p 712681 SLD5 30037023 SLD5 Sugiyamaella lignohabitans Sld5p XP_018736373.1 711932 R 796027 CDS AWJ20_4848 30037024 713518..715242 D 1 NC_031673.1 uncharacterized protein 715242 30037024 AWJ20_4848 Sugiyamaella lignohabitans uncharacterized protein XP_018736374.1 713518 D 796027 CDS AWJ20_4849 30037025 complement(715649..717979) D 1 NC_031673.1 uncharacterized protein 717979 30037025 AWJ20_4849 Sugiyamaella lignohabitans uncharacterized protein XP_018736375.1 715649 R 796027 CDS AWJ20_4850 30037027 719318..720154 D 1 NC_031673.1 Protein essential for meiotic DNA replication and sporulation; cytoplasmic protein; subunit of the MIS complex which controls mRNA methylation during during the induction of sporulation; also interacts with Orc2p, which is a component of the origin recognition complex; GO_component: GO:0036396 - MIS complex [Evidence IDA,IPI] [PMID 22685417]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_function: GO:0005515 - protein binding [Evidence IPI] [PMID 22685417]; GO_process: GO:0080009 - mRNA methylation [Evidence IGI,IMP] [PMID 22685417]; GO_process: GO:0007126 - meiotic nuclear division [Evidence IEA]; GO_process: GO:0007126 - meiotic nuclear division [Evidence IMP] [PMID 22685417]; GO_process: GO:2000221 - negative regulation of pseudohyphal growth [Evidence IMP] [PMID 22685417]; GO_process: GO:0006279 - premeiotic DNA replication [Evidence IGI] [PMID 11238403]; GO_process: GO:0006279 - premeiotic DNA replication [Evidence IMP] [PMID 9504908]; GO_process: GO:0030435 - sporulation resulting in formation of a cellular spore [Evidence IEA]; Mum2p 720154 MUM2 30037027 MUM2 Sugiyamaella lignohabitans Mum2p XP_018736376.1 719318 D 796027 CDS AWJ20_4851 30037028 complement(720467..722287) D 1 NC_031673.1 uncharacterized protein 722287 30037028 AWJ20_4851 Sugiyamaella lignohabitans uncharacterized protein XP_018736377.1 720467 R 796027 CDS AWJ20_4852 30037029 complement(722631..723776) D 1 NC_031673.1 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) synthase; catalyzes the first step in aromatic amino acid biosynthesis and is feedback-inhibited by phenylalanine or high concentration of tyrosine or tryptophan; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003849 - 3-deoxy-7-phosphoheptulonate synthase activity [Evidence IEA,IEA]; GO_function: GO:0003849 - 3-deoxy-7-phosphoheptulonate synthase activity [Evidence IDA] [PMID 2880280]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0009073 - aromatic amino acid family biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0009058 - biosynthetic process [Evidence IEA]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0009423 - chorismate biosynthetic process [Evidence IEA]; GO_process: GO:0009423 - chorismate biosynthetic process [Evidence TAS] [PMID 1943992]; GO_process: GO:0006950 - response to stress [Evidence IEA]; 3-deoxy-7-phosphoheptulonate synthase ARO3 723776 ARO3 30037029 ARO3 Sugiyamaella lignohabitans 3-deoxy-7-phosphoheptulonate synthase ARO3 XP_018736378.1 722631 R 796027 CDS AWJ20_4853 30037030 725223..726275 D 1 NC_031673.1 uncharacterized protein 726275 30037030 AWJ20_4853 Sugiyamaella lignohabitans uncharacterized protein XP_018736379.1 725223 D 796027 CDS AWJ20_4854 30037031 complement(726495..728198) D 1 NC_031673.1 Protein with WD-40 repeats involved in rRNA processing; associates with trans-acting ribosome biogenesis factors; similar to beta-transducin superfamily; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005730 - nucleolus [Evidence IPI] [PMID 15588312]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006364 - rRNA processing [Evidence IMP,ISS] [PMID 15588312]; Pwp1p 728198 PWP1 30037031 PWP1 Sugiyamaella lignohabitans Pwp1p XP_018736380.1 726495 R 796027 CDS AWJ20_4855 30037032 730157..732340 D 1 NC_031673.1 Phosphatidylinositol-4-phosphate 5-kinase; involved in actin cytoskeleton organization and cell morphogenesis; multicopy suppressor of stt4 mutation; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9624177]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 9624177]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IEA]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IDA] [PMID 9624177]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IDA] [PMID 9624178]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016307 - phosphatidylinositol phosphate kinase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0031321 - ascospore-type prospore assembly [Evidence IGI] [PMID 19502581]; GO_process: GO:0046488 - phosphatidylinositol metabolic process [Evidence IEA]; GO_process: GO:0046854 - phosphatidylinositol phosphorylation [Evidence IDA] [PMID 9624177]; GO_process: GO:0046854 - phosphatidylinositol phosphorylation [Evidence IDA] [PMID 9624178]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; 1-phosphatidylinositol-4-phosphate 5-kinase 732340 MSS4 30037032 MSS4 Sugiyamaella lignohabitans 1-phosphatidylinositol-4-phosphate 5-kinase XP_018736381.1 730157 D 796027 CDS AWJ20_4856 30037033 734400..735878 D 1 NC_031673.1 N-myristoyl transferase; catalyzes the cotranslational, covalent attachment of myristic acid to the N-terminal glycine residue of several proteins involved in cellular growth and signal transduction; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 1544917]; GO_function: GO:0004379 - glycylpeptide N-tetradecanoyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0004379 - glycylpeptide N-tetradecanoyltransferase activity [Evidence IMP] [PMID 8955162]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016746 - transferase activity, transferring acyl groups [Evidence IEA]; GO_process: GO:0018008 - N-terminal peptidyl-glycine N-myristoylation [Evidence TAS] [PMID 10570244]; GO_process: GO:0006499 - N-terminal protein myristoylation [Evidence IEA]; GO_process: GO:0001302 - replicative cell aging [Evidence IMP] [PMID 10921902]; glycylpeptide N-tetradecanoyltransferase NMT1 735878 NMT1 30037033 NMT1 Sugiyamaella lignohabitans glycylpeptide N-tetradecanoyltransferase NMT1 XP_018736382.1 734400 D 796027 CDS AWJ20_4857 30037034 complement(736235..736729) D 1 NC_031673.1 Subunit Va of cytochrome c oxidase; cytochrome c oxidase is the terminal member of the mitochondrial inner membrane electron transport chain; Cox5Ap is predominantly expressed during aerobic growth while its isoform Vb (Cox5Bp) is expressed during anaerobic growth; COX5A has a paralog, COX5B, that arose from the whole genome duplication; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005751 - mitochondrial respiratory chain complex IV [Evidence IPI] [PMID 1331058]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0004129 - cytochrome-c oxidase activity [Evidence IEA,IEA]; GO_function: GO:0004129 - cytochrome-c oxidase activity [Evidence IMP] [PMID 1847916]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_process: GO:1902600 - hydrogen ion transmembrane transport [Evidence IEA,IEA]; GO_process: GO:0006123 - mitochondrial electron transport, cytochrome c to oxygen [Evidence IDA] [PMID 1331058]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; cytochrome c oxidase subunit Va 736729 COX5A 30037034 COX5A Sugiyamaella lignohabitans cytochrome c oxidase subunit Va XP_018736383.1 736235 R 796027 CDS AWJ20_4858 30037035 740999..742726 D 1 NC_031673.1 High affinity methionine permease; integral membrane protein with 13 putative membrane-spanning regions; also involved in cysteine uptake; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0005887 - integral component of plasma membrane [Evidence ISS] [PMID 8893857]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA,IEA]; GO_function: GO:0000102 - L-methionine secondary active transmembrane transporter activity [Evidence IDA] [PMID 8893857]; GO_function: GO:0015171 - amino acid transmembrane transporter activity [Evidence IEA]; GO_process: GO:0003333 - amino acid transmembrane transport [Evidence IEA]; GO_process: GO:0006865 - amino acid transport [Evidence IEA]; GO_process: GO:0042883 - cysteine transport [Evidence IDA] [PMID 11330701]; GO_process: GO:0044690 - methionine import [Evidence IGI,IMP] [PMID 8893857]; GO_process: GO:0015821 - methionine transport [Evidence IDA] [PMID 11330701]; GO_process: GO:0000101 - sulfur amino acid transport [Evidence IMP] [PMID 8893857]; GO_process: GO:0006810 - transport [Evidence IEA]; Mup1p 742726 MUP1 30037035 MUP1 Sugiyamaella lignohabitans Mup1p XP_018736384.1 740999 D 796027 CDS AWJ20_4859 30037036 complement(742984..745986) D 1 NC_031673.1 serine/threonine protein kinase PSK2 745986 PSK2 30037036 PSK2 Sugiyamaella lignohabitans serine/threonine protein kinase PSK2 XP_018736385.1 742984 R 796027 CDS AWJ20_4860 30037038 752760..756962 D 1 NC_031673.1 Protein with a role in endocytosis and vacuole integrity; peripheral membrane protein; interacts with and negatively regulates Arl1p; localizes to the endosome; member of the Sec7p family of proteins; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA]; GO_component: GO:0005829 - cytosol [Evidence TAS] [PMID 12052896]; GO_component: GO:0005768 - endosome [Evidence IDA] [PMID 12052896]; GO_component: GO:0019898 - extrinsic component of membrane [Evidence IDA] [PMID 12052896]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005802 - trans-Golgi network [Evidence IDA] [PMID 16301316]; GO_function: GO:0005085 - guanyl-nucleotide exchange factor activity [Evidence IGI,IPI,ISS] [PMID 12052896]; GO_process: GO:0006895 - Golgi to endosome transport [Evidence IMP] [PMID 16301316]; GO_process: GO:0006897 - endocytosis [Evidence IMP] [PMID 12052896]; GO_process: GO:0006623 - protein targeting to vacuole [Evidence IMP] [PMID 12134085]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IMP,ISS] [PMID 11169758]; Mon2p 756962 MON2 30037038 MON2 Sugiyamaella lignohabitans Mon2p XP_018736386.1 752760 D 796027 CDS AWJ20_4861 30037039 complement(757091..760846) D 1 NC_031673.1 Chitin synthase III; catalyzes the transfer of N-acetylglucosamine (GlcNAc) to chitin; required for synthesis of the majority of cell wall chitin, the chitin ring during bud emergence, and spore wall chitosan; contains overlapping di-leucine and di-acidic signals that mediate, respectively, intracellular trafficking by AP-1 and trafficking to plasma membrane by exomer complex; requires AP-3 complex for its intracellular retention; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 15470103]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 8909536]; GO_component: GO:0045009 - chitosome [Evidence IDA] [PMID 8970154]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 9008706]; GO_component: GO:0000131 - incipient cellular bud site [Evidence IDA] [PMID 15470103]; GO_component: GO:0000131 - incipient cellular bud site [Evidence IDA] [PMID 9008706]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 19053807]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005628 - prospore membrane [Evidence IDA] [PMID 15755916]; GO_function: GO:0004100 - chitin synthase activity [Evidence IEA]; GO_function: GO:0004100 - chitin synthase activity [Evidence IMP] [PMID 9760183]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA]; GO_function: GO:0016758 - transferase activity, transferring hexosyl groups [Evidence IEA]; GO_process: GO:0030476 - ascospore wall assembly [Evidence IMP] [PMID 1293886]; GO_process: GO:0034221 - fungal-type cell wall chitin biosynthetic process [Evidence TAS] [PMID 7565410]; chitin synthase CHS3 760846 CHS3 30037039 CHS3 Sugiyamaella lignohabitans chitin synthase CHS3 XP_018736387.1 757091 R 796027 CDS AWJ20_4862 30037040 complement(763153..763563) D 1 NC_031673.1 uncharacterized protein 763563 30037040 AWJ20_4862 Sugiyamaella lignohabitans uncharacterized protein XP_018736388.1 763153 R 796027 CDS AWJ20_4863 30037041 complement(764663..766093) D 1 NC_031673.1 Mitochondrial aspartyl-tRNA synthetase; required for acylation of aspartyl-tRNA; yeast and bacterial aspartyl-, asparaginyl-, and lysyl-tRNA synthetases contain regions with high sequence similarity, suggesting a common ancestral gene; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IMP,ISS] [PMID 2668951]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004812 - aminoacyl-tRNA ligase activity [Evidence IEA,IEA]; GO_function: GO:0004815 - aspartate-tRNA ligase activity [Evidence IEA]; GO_function: GO:0004815 - aspartate-tRNA ligase activity [Evidence IMP,ISA] [PMID 2668951]; GO_function: GO:0016874 - ligase activity [Evidence IEA,IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_process: GO:0070146 - mitochondrial aspartyl-tRNA aminoacylation [Evidence IGI] [PMID 10710420]; GO_process: GO:0070146 - mitochondrial aspartyl-tRNA aminoacylation [Evidence IMP] [PMID 2668951]; GO_process: GO:0006418 - tRNA aminoacylation for protein translation [Evidence IEA]; GO_process: GO:0006412 - translation [Evidence IEA]; aspartate--tRNA ligase MSD1 766093 MSD1 30037041 MSD1 Sugiyamaella lignohabitans aspartate--tRNA ligase MSD1 XP_018736389.1 764663 R 796027 CDS AWJ20_4864 30037042 767860..768792 D 1 NC_031673.1 Metalloprotease subunit of 19S regulatory particle; part of 26S proteasome lid; couples the deubiquitination and degradation of proteasome substrates; involved, independent of catalytic activity, in fission of mitochondria and peroxisomes; protein abundance increases in response to DNA replication stress; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 19773362]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 19773362]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 15210724]; GO_component: GO:0000502 - proteasome complex [Evidence IEA]; GO_component: GO:0008541 - proteasome regulatory particle, lid subcomplex [Evidence IDA] [PMID 11742986]; GO_component: GO:0008541 - proteasome regulatory particle, lid subcomplex [Evidence IDA] [PMID 9741626]; GO_component: GO:0034515 - proteasome storage granule [Evidence IDA] [PMID 18504300]; GO_function: GO:0008234 - cysteine-type peptidase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0008237 - metallopeptidase activity [Evidence ISS] [PMID 12183636]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_function: GO:0004843 - ubiquitin-specific protease activity [Evidence IMP] [PMID 12183636]; GO_function: GO:0004843 - ubiquitin-specific protease activity [Evidence IMP] [PMID 12353037]; GO_process: GO:0000266 - mitochondrial fission [Evidence IMP] [PMID 19773362]; GO_process: GO:0016559 - peroxisome fission [Evidence IMP] [PMID 19773362]; GO_process: GO:0043161 - proteasome-mediated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 12183636]; GO_process: GO:0016579 - protein deubiquitination [Evidence IMP] [PMID 12183636]; GO_process: GO:0016579 - protein deubiquitination [Evidence IGI] [PMID 14581483]; GO_process: GO:0006508 - proteolysis [Evidence IEA]; proteasome regulatory particle lid subunit RPN11 768792 RPN11 30037042 RPN11 Sugiyamaella lignohabitans proteasome regulatory particle lid subunit RPN11 XP_018736390.1 767860 D 796027 CDS AWJ20_4865 30037043 complement(769241..771364) D 1 NC_031673.1 Member of the heat shock protein 70 (HSP70) family; may be involved in protein folding; localized to the cytoplasm; SSE2 has a paralog, SSE1, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0000774 - adenyl-nucleotide exchange factor activity [Evidence IDA] [PMID 16688212]; GO_function: GO:0005516 - calmodulin binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006457 - protein folding [Evidence ISS] [PMID 8406043]; GO_process: GO:0042026 - protein refolding [Evidence IGI] [PMID 16688211]; GO_process: GO:0006950 - response to stress [Evidence IEA]; adenyl-nucleotide exchange factor SSE2 771364 SSE2 30037043 SSE2 Sugiyamaella lignohabitans adenyl-nucleotide exchange factor SSE2 XP_018736391.1 769241 R 796027 CDS AWJ20_4866 30037044 complement(771842..773323) D 1 NC_031673.1 Substrate-recruiting cofactor of the Cdc48p-Npl4p-Ufd1p segregase; assists Cdc48p in the dislocation of misfolded, polyubiquitinated ERAD substrates that are subsequently delivered to the proteasome for degradation; also involved in the regulated destruction of resident ER membrane proteins, such as HMG-CoA reductase (Hmg1/2p) and cytoplasmic proteins (Fbp1p); role in mobilizing membrane bound transcription factors by regulated ubiquitin/proteasome-dependent processing (RUP); GO_component: GO:0034098 - Cdc48p-Npl4p-Ufd1p AAA ATPase complex [Evidence IDA] [PMID 11598205]; GO_component: GO:0034098 - Cdc48p-Npl4p-Ufd1p AAA ATPase complex [Evidence IDA] [PMID 11733065]; GO_component: GO:0036266 - Cdc48p-Npl4p-Vms1p AAA ATPase complex [Evidence IDA] [PMID 21070972]; GO_component: GO:0000837 - Doa10p ubiquitin ligase complex [Evidence IDA] [PMID 16873066]; GO_component: GO:0000839 - Hrd1p ubiquitin ligase ERAD-L complex [Evidence IDA] [PMID 16873065]; GO_component: GO:0000839 - Hrd1p ubiquitin ligase ERAD-L complex [Evidence IDA] [PMID 16873066]; GO_component: GO:1990112 - RQC complex [Evidence IDA] [PMID 23178123]; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0031965 - nuclear membrane [Evidence IEA]; GO_component: GO:0042175 - nuclear outer membrane-endoplasmic reticulum membrane network [Evidence IDA] [PMID 11598205]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_component: GO:0048471 - perinuclear region of cytoplasm [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0071712 - ER-associated misfolded protein catabolic process [Evidence IMP] [PMID 11740563]; GO_process: GO:0071712 - ER-associated misfolded protein catabolic process [Evidence IMP] [PMID 11813000]; GO_process: GO:0030433 - ER-associated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 11739805]; GO_process: GO:0071629 - cytoplasm-associated proteasomal ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 18812321]; GO_process: GO:0051028 - mRNA transport [Evidence IEA]; GO_process: GO:0072671 - mitochondria-associated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 21070972]; GO_process: GO:0051228 - mitotic spindle disassembly [Evidence IMP] [PMID 14636562]; GO_process: GO:0070651 - nonfunctional rRNA decay [Evidence IMP] [PMID 22505030]; GO_process: GO:1900182 - positive regulation of protein localization to nucleus [Evidence IMP] [PMID 11598205]; GO_process: GO:1900182 - positive regulation of protein localization to nucleus [Evidence IMP] [PMID 11733065]; GO_process: GO:0043161 - proteasome-mediated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 20206597]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0030970 - retrograde protein transport, ER to cytosol [Evidence IMP] [PMID 11740563]; GO_process: GO:1990116 - ribosome-associated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 23358411]; GO_process: GO:0006810 - transport [Evidence IEA]; Npl4p 773323 NPL4 30037044 NPL4 Sugiyamaella lignohabitans Npl4p XP_018736392.1 771842 R 796027 CDS AWJ20_4867 30037045 complement(774150..776045) D 1 NC_031673.1 bromodomain containing protein 1, Bdc1 776045 bdc1 30037045 bdc1 Sugiyamaella lignohabitans bromodomain containing protein 1, Bdc1 XP_018736393.1 774150 R 796027 CDS AWJ20_4868 30037046 777130..777489 D 1 NC_031673.1 Sec63 complex subunit SEC66 777489 SEC66 30037046 SEC66 Sugiyamaella lignohabitans Sec63 complex subunit SEC66 XP_018736394.1 777130 D 796027 CDS AWJ20_4869 30037047 complement(780196..784647) D 1 NC_031673.1 GYF domain protein; involved in COPII vesicle formation; interacts with the Sec23p/Sec24p subcomplex; overexpression suppresses the temperature sensitivity of a myo2 mutant; similar to S. pombe Mpd2; SMY2 has a paralog, SYH1, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0000932 - cytoplasmic mRNA processing body [Evidence IDA] [PMID 17804396]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IDA] [PMID 17973654]; GO_component: GO:0019898 - extrinsic component of membrane [Evidence IDA] [PMID 17973654]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006888 - ER to Golgi vesicle-mediated transport [Evidence IGI,IPI] [PMID 17973654]; Smy2p 784647 SMY2 30037047 SMY2 Sugiyamaella lignohabitans Smy2p XP_018736395.1 780196 R 796027 CDS AWJ20_4870 30037049 785371..787437 D 1 NC_031673.1 Conserved zinc-finger domain protein involved in pre-mRNA splicing; critical for splicing of nearly all intron-containing genes; required for assembly of U4 snRNA into the U4/U6 particle; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 10022888]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005681 - spliceosomal complex [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0008380 - RNA splicing [Evidence IEA]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0000398 - mRNA splicing, via spliceosome [Evidence IDA] [PMID 10022888]; GO_process: GO:0000245 - spliceosomal complex assembly [Evidence IDA] [PMID 24681967]; GO_process: GO:0006511 - ubiquitin-dependent protein catabolic process [Evidence IEA]; Sad1p 787437 SAD1 30037049 SAD1 Sugiyamaella lignohabitans Sad1p XP_018736396.1 785371 D 796027 CDS AWJ20_4871 30037050 complement(788160..788480) D 1 NC_031673.1 Chaperone required for correct maturation of the 20S proteasome; short-lived chaperone; may inhibit premature dimerization of proteasome half-mers; degraded by proteasome upon completion of its assembly; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11922673]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11922673]; GO_component: GO:0000502 - proteasome complex [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IDA] [PMID 10975253]; GO_process: GO:0043248 - proteasome assembly [Evidence IGI] [PMID 17431397]; GO_process: GO:0043248 - proteasome assembly [Evidence IMP] [PMID 9491890]; GO_process: GO:0006511 - ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 9491890]; Ump1p 788480 UMP1 30037050 UMP1 Sugiyamaella lignohabitans Ump1p XP_018736397.1 788160 R 796027 CDS AWJ20_4872 30037051 789365..790984 D 1 NC_031673.1 Mitochondrial type 2C protein phosphatase (PP2C); involved in regulation of pyruvate dehydrogenase activity by dephosphorylating the serine 133 of the Pda1p subunit; localizes to the intermembrane space and is imported via the presequence pathway and processed by the inner membrane protease (Imp1p-Imp2p); acts in concert with kinases Pkp1p and Pkp2p and phosphatase Ptc6p; GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IEA]; GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IDA] [PMID 22984289]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16643908]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0004741 - [pyruvate dehydrogenase (lipoamide)] phosphatase activity [Evidence IEA]; GO_function: GO:0004741 - [pyruvate dehydrogenase (lipoamide)] phosphatase activity [Evidence ISS] [PMID 16643908]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004721 - phosphoprotein phosphatase activity [Evidence IEA]; GO_function: GO:0004722 - protein serine/threonine phosphatase activity [Evidence IEA]; GO_function: GO:0004722 - protein serine/threonine phosphatase activity [Evidence IDA,ISS] [PMID 10580002]; GO_process: GO:0043085 - positive regulation of catalytic activity [Evidence IMP] [PMID 18180296]; GO_process: GO:0006470 - protein dephosphorylation [Evidence IEA]; GO_process: GO:0006470 - protein dephosphorylation [Evidence IDA] [PMID 10580002]; GO_process: GO:0050790 - regulation of catalytic activity [Evidence IMP] [PMID 16643908]; type 2C protein phosphatase PTC5 790984 PTC5 30037051 PTC5 Sugiyamaella lignohabitans type 2C protein phosphatase PTC5 XP_018736398.1 789365 D 796027 CDS AWJ20_4873 30037052 complement(791263..792141) D 1 NC_031673.1 Glucose-6-phosphate 1-epimerase (hexose-6-phosphate mutarotase); likely involved in carbohydrate metabolism; GFP-fusion protein localizes to both the nucleus and cytoplasm and is induced in response to the DNA-damaging agent MMS; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0030246 - carbohydrate binding [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0047938 - glucose-6-phosphate 1-epimerase activity [Evidence IEA]; GO_function: GO:0047938 - glucose-6-phosphate 1-epimerase activity [Evidence IDA] [PMID 16857670]; GO_function: GO:0016853 - isomerase activity [Evidence IEA,IEA]; GO_process: GO:0005975 - carbohydrate metabolic process [Evidence IEA]; GO_process: GO:0044262 - cellular carbohydrate metabolic process [Evidence IC] [PMID 16857670]; glucose-6-phosphate 1-epimerase 792141 30037052 AWJ20_4873 Sugiyamaella lignohabitans glucose-6-phosphate 1-epimerase XP_018736399.1 791263 R 796027 CDS AWJ20_4874 30037053 793841..795592 D 1 NC_031673.1 Ferrioxamine B transporter; member of the ARN family of transporters that specifically recognize siderophore-iron chelates; transcription is induced during iron deprivation and diauxic shift; potentially phosphorylated by Cdc28p; GO_component: GO:0016023 - cytoplasmic membrane-bounded vesicle [Evidence IDA] [PMID 10748025]; GO_component: GO:0005768 - endosome [Evidence IEA]; GO_component: GO:0005768 - endosome [Evidence IDA] [PMID 19469713]; GO_component: GO:0010008 - endosome membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0015344 - siderophore uptake transmembrane transporter activity [Evidence IMP,ISS] [PMID 9884238]; GO_process: GO:0006879 - cellular iron ion homeostasis [Evidence IDA,IMP] [PMID 9884238]; GO_process: GO:0006811 - ion transport [Evidence IEA]; GO_process: GO:0055072 - iron ion homeostasis [Evidence IEA]; GO_process: GO:0015891 - siderophore transport [Evidence IMP] [PMID 9884238]; GO_process: GO:0055085 - transmembrane transport [Evidence IMP] [PMID 9884238]; GO_process: GO:0006810 - transport [Evidence IEA]; Sit1p 795592 SIT1 30037053 SIT1 Sugiyamaella lignohabitans Sit1p XP_018736400.1 793841 D 796027 CDS AWJ20_4875 30037054 799253..800890 D 1 NC_031673.1 uncharacterized protein 800890 30037054 AWJ20_4875 Sugiyamaella lignohabitans uncharacterized protein XP_018736401.1 799253 D 796027 CDS AWJ20_4876 30037055 complement(800776..801924) D 1 NC_031673.1 uncharacterized protein 801924 30037055 AWJ20_4876 Sugiyamaella lignohabitans uncharacterized protein XP_018736402.1 800776 R 796027 CDS AWJ20_4877 30037056 complement(802480..802965) D 1 NC_031673.1 Endosomal Rab family GTPase; required for endocytic transport and sorting of vacuolar hydrolases; required for endosomal localization of the CORVET complex; required with YPT52 for MVB biogenesis and sorting; involved in autophagy and ionic stress tolerance; geranylgeranylation required for membrane association; protein abundance increases in response to DNA replication stress; mammalian Rab5 homolog; VPS21 has a paralog, YPT53, that arose from the whole genome duplication; GO_component: GO:0005768 - endosome [Evidence IEA]; GO_component: GO:0010008 - endosome membrane [Evidence IEA]; GO_component: GO:0005770 - late endosome [Evidence IMP] [PMID 11872141]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0031966 - mitochondrial membrane [Evidence IEA]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IDA] [PMID 16407407]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0005525 - GTP binding [Evidence IEA,IEA]; GO_function: GO:0003924 - GTPase activity [Evidence IDA] [PMID 11210571]; GO_function: GO:0003924 - GTPase activity [Evidence IMP] [PMID 8163546]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006895 - Golgi to endosome transport [Evidence IGI,IMP] [PMID 22748138]; GO_process: GO:0006895 - Golgi to endosome transport [Evidence IGI,IMP] [PMID 23612966]; GO_process: GO:0006897 - endocytosis [Evidence IMP] [PMID 8163546]; GO_process: GO:0032511 - late endosome to vacuole transport via multivesicular body sorting pathway [Evidence IGI] [PMID 22748138]; GO_process: GO:0036258 - multivesicular body assembly [Evidence IGI] [PMID 22748138]; GO_process: GO:0036010 - protein localization to endosome [Evidence IGI] [PMID 23264632]; GO_process: GO:0006623 - protein targeting to vacuole [Evidence IMP] [PMID 8163546]; GO_process: GO:0015031 - protein transport [Evidence IEA,IEA]; GO_process: GO:0007264 - small GTPase mediated signal transduction [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0000011 - vacuole inheritance [Evidence IMP] [PMID 1493335]; Rab family GTPase VPS21 802965 VPS21 30037056 VPS21 Sugiyamaella lignohabitans Rab family GTPase VPS21 XP_018736403.1 802480 R 796027 CDS AWJ20_4878 30037057 complement(806682..808730) D 1 NC_031673.1 uncharacterized protein 808730 30037057 AWJ20_4878 Sugiyamaella lignohabitans uncharacterized protein XP_018736404.1 806682 R 796027 CDS AWJ20_4879 30037058 811385..813019 D 1 NC_031673.1 Isocitrate lyase; catalyzes the formation of succinate and glyoxylate from isocitrate, a key reaction of the glyoxylate cycle; expression of ICL1 is induced by growth on ethanol and repressed by growth on glucose; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0004451 - isocitrate lyase activity [Evidence IEA,IEA]; GO_function: GO:0004451 - isocitrate lyase activity [Evidence IMP,ISS] [PMID 1551398]; GO_function: GO:0016829 - lyase activity [Evidence IEA]; GO_process: GO:0019752 - carboxylic acid metabolic process [Evidence IEA]; GO_process: GO:0006097 - glyoxylate cycle [Evidence IEA,IEA]; GO_process: GO:0006097 - glyoxylate cycle [Evidence TAS] [PMID 11092862]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0006099 - tricarboxylic acid cycle [Evidence IEA]; isocitrate lyase 1 813019 ICL1 30037058 ICL1 Sugiyamaella lignohabitans isocitrate lyase 1 XP_018736405.1 811385 D 796027 CDS AWJ20_4880 30037060 816619..818925 D 1 NC_031673.1 GTPase-activating protein (RhoGAP) for Rho3p and Rho4p; possibly involved in control of actin cytoskeleton organization; GO_component: GO:0030479 - actin cortical patch [Evidence IDA] [PMID 10931290]; GO_component: GO:0005933 - cellular bud [Evidence IDA] [PMID 10931290]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 19053807]; GO_component: GO:0005628 - prospore membrane [Evidence IDA] [PMID 24390141]; GO_function: GO:0005096 - GTPase activator activity [Evidence IEA]; GO_function: GO:0005100 - Rho GTPase activator activity [Evidence IDA,IGI] [PMID 10526184]; GO_function: GO:0080025 - phosphatidylinositol-3,5-bisphosphate binding [Evidence IDA,IMP] [PMID 18845541]; GO_function: GO:0032266 - phosphatidylinositol-3-phosphate binding [Evidence IDA,IMP] [PMID 18845541]; GO_function: GO:0005546 - phosphatidylinositol-4,5-bisphosphate binding [Evidence IDA] [PMID 21215255]; GO_function: GO:0070273 - phosphatidylinositol-4-phosphate binding [Evidence IDA,IMP] [PMID 18845541]; GO_function: GO:0010314 - phosphatidylinositol-5-phosphate binding [Evidence IDA,IMP] [PMID 18845541]; GO_process: GO:0007231 - osmosensory signaling pathway [Evidence IGI] [PMID 10590461]; GO_process: GO:0043547 - positive regulation of GTPase activity [Evidence IEA]; GO_process: GO:0001101 - response to acid [Evidence IMP] [PMID 16087742]; GO_process: GO:0007165 - signal transduction [Evidence IEA]; Rgd1p 818925 RGD1 30037060 RGD1 Sugiyamaella lignohabitans Rgd1p XP_018736406.1 816619 D 796027 CDS AWJ20_4881 30037061 complement(819143..821929) D 1 NC_031673.1 Ubiquitin-protein ligase; forms a complex with Elc1p that polyubiquitylates monoubiquitylated RNA polymerase II to trigger its proteolysis; cullin family member with similarity to Cdc53p and human CUL3; GO_component: GO:0031463 - Cul3-RING ubiquitin ligase complex [Evidence IDA] [PMID 16675952]; GO_component: GO:0031463 - Cul3-RING ubiquitin ligase complex [Evidence IMP] [PMID 17296727]; GO_component: GO:0031461 - cullin-RING ubiquitin ligase complex [Evidence IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0031625 - ubiquitin protein ligase binding [Evidence IEA]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence IDA] [PMID 12676951]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence IDA] [PMID 16675952]; GO_process: GO:0016567 - protein ubiquitination [Evidence IEA]; GO_process: GO:0042787 - protein ubiquitination involved in ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 17296727]; GO_process: GO:0006511 - ubiquitin-dependent protein catabolic process [Evidence IEA]; GO_process: GO:0006511 - ubiquitin-dependent protein catabolic process [Evidence IC] [PMID 12676951]; GO_process: GO:0006511 - ubiquitin-dependent protein catabolic process [Evidence ISS] [PMID 9531531]; cullin CUL3 821929 CUL3 30037061 CUL3 Sugiyamaella lignohabitans cullin CUL3 XP_018736407.1 819143 R 796027 CDS AWJ20_4882 30037062 825460..826128 D 1 NC_031673.1 Core component of transport protein particle (TRAPP) complexes I-III; TRAPP complexes are related multimeric guanine nucleotide-exchange factor for the GTPase Ypt1p, regulating ER-Golgi traffic (TRAPPI), intra-Golgi traffic (TRAPPII), endosome-Golgi traffic (TRAPPII and III) and autophagy (TRAPPIII); GO_component: GO:0005794 - Golgi apparatus [Evidence IEA,IEA]; GO_component: GO:1990070 - TRAPPI protein complex [Evidence IDA] [PMID 11239471]; GO_component: GO:1990071 - TRAPPII protein complex [Evidence IDA] [PMID 11239471]; GO_component: GO:1990072 - TRAPPIII protein complex [Evidence IDA] [PMID 20375281]; GO_component: GO:0005801 - cis-Golgi network [Evidence IDA] [PMID 19843283]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA,IEA]; GO_component: GO:0000407 - pre-autophagosomal structure [Evidence IEA]; GO_component: GO:0005802 - trans-Golgi network [Evidence IDA] [PMID 19843283]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006888 - ER to Golgi vesicle-mediated transport [Evidence IGI] [PMID 9564032]; GO_process: GO:0006914 - autophagy [Evidence IEA]; GO_process: GO:0006461 - protein complex assembly [Evidence IGI] [PMID 19843283]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IEA]; Trs33p 826128 TRS33 30037062 TRS33 Sugiyamaella lignohabitans Trs33p XP_018736408.1 825460 D 796027 CDS AWJ20_4883 30037063 complement(826385..827491) D 1 NC_031673.1 putative tyrosine protein phosphatase OCA1 827491 OCA1 30037063 OCA1 Sugiyamaella lignohabitans putative tyrosine protein phosphatase OCA1 XP_018736409.1 826385 R 796027 CDS AWJ20_4884 30037064 complement(829550..830287) D 1 NC_031673.1 GTPase involved in G-protein signaling in adenylate cyclase activation; plays a role in cell proliferation; localized to the plasma membrane; homolog of mammalian RAS proto-oncogenes; relative distribution to the nucleus increases upon DNA replication stress; RAS1 has a paralog, RAS2, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 20162532]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 3513173]; GO_function: GO:0005525 - GTP binding [Evidence IEA,IEA]; GO_function: GO:0003924 - GTPase activity [Evidence IDA] [PMID 14674766]; GO_function: GO:0003924 - GTPase activity [Evidence IMP] [PMID 6327067]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006184 - GTP catabolic process [Evidence IEA]; GO_process: GO:0007189 - adenylate cyclase-activating G-protein coupled receptor signaling pathway [Evidence IDA] [PMID 3891097]; GO_process: GO:0045762 - positive regulation of adenylate cyclase activity [Evidence IGI] [PMID 2981630]; GO_process: GO:0045762 - positive regulation of adenylate cyclase activity [Evidence IGI] [PMID 3891097]; GO_process: GO:0097271 - protein localization to bud neck [Evidence IGI] [PMID 12782684]; GO_process: GO:0001302 - replicative cell aging [Evidence IMP] [PMID 8034612]; GO_process: GO:0007165 - signal transduction [Evidence IEA]; GO_process: GO:0007264 - small GTPase mediated signal transduction [Evidence IEA]; Ras family GTPase RAS1 830287 RAS1 30037064 RAS1 Sugiyamaella lignohabitans Ras family GTPase RAS1 XP_018736410.1 829550 R 796027 CDS AWJ20_4885 30037065 complement(838397..840295) D 1 NC_031673.1 Component of the Rpd3L histone deacetylase complex; involved in transcriptional regulation of PHO5; affects termination of snoRNAs and cryptic unstable transcripts (CUTs); C-terminus has similarity to human candidate tumor suppressor p33(ING1) and its isoform ING3; GO_component: GO:0033698 - Rpd3L complex [Evidence IDA] [PMID 16286007]; GO_component: GO:0033698 - Rpd3L complex [Evidence IDA] [PMID 16286008]; GO_component: GO:0033698 - Rpd3L complex [Evidence IDA] [PMID 16314178]; GO_component: GO:0033698 - Rpd3L complex [Evidence IDA] [PMID 19040720]; GO_component: GO:0070210 - Rpd3L-Expanded complex [Evidence IDA] [PMID 19040720]; GO_component: GO:0000118 - histone deacetylase complex [Evidence IDA] [PMID 12672825]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11914276]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0035064 - methylated histone binding [Evidence IDA] [PMID 16728974]; GO_function: GO:0035064 - methylated histone binding [Evidence IDA] [PMID 17142463]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0016568 - chromatin modification [Evidence IEA,IEA]; GO_process: GO:0016568 - chromatin modification [Evidence IMP,IPI,ISS] [PMID 10805724]; GO_process: GO:0061188 - negative regulation of chromatin silencing at rDNA [Evidence IMP] [PMID 16286008]; GO_process: GO:0061186 - negative regulation of chromatin silencing at silent mating-type cassette [Evidence IMP] [PMID 16286008]; GO_process: GO:0031939 - negative regulation of chromatin silencing at telomere [Evidence IMP] [PMID 16286008]; GO_process: GO:0031939 - negative regulation of chromatin silencing at telomere [Evidence IMP] [PMID 16314178]; GO_process: GO:0031939 - negative regulation of chromatin silencing at telomere [Evidence IMP] [PMID 19372273]; GO_process: GO:0016479 - negative regulation of transcription from RNA polymerase I promoter [Evidence IMP] [PMID 19270272]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 17210643]; GO_process: GO:0061408 - positive regulation of transcription from RNA polymerase II promoter in response to heat stress [Evidence IMP] [PMID 20398213]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Pho23p 840295 PHO23 30037065 PHO23 Sugiyamaella lignohabitans Pho23p XP_018736411.1 838397 R 796027 CDS AWJ20_4886 30037066 840788..842791 D 1 NC_031673.1 Peripheral mitochondrial inner membrane protein; may facilitate use of unformylated tRNA-Met in mitochondrial translation initiation; stabilizes the bicistronic AAP1-ATP6 mRNA; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0019898 - extrinsic component of membrane [Evidence IDA] [PMID 14742425]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IDA] [PMID 14742425]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0016071 - mRNA metabolic process [Evidence IMP] [PMID 14742425]; GO_process: GO:0070124 - mitochondrial translational initiation [Evidence IGI] [PMID 19843529]; Aep3p 842791 AEP3 30037066 AEP3 Sugiyamaella lignohabitans Aep3p XP_018736412.1 840788 D 796027 CDS AWJ20_4887 30037067 846302..849751 D 1 NC_031673.1 Vacuolar membrane protein; transits through the biosynthetic vacuolar protein sorting pathway, involved in sphingolipid metabolism; cells lacking Ncr1p exhibit high levels of long chain bases (LCB), similar to the accumulation of high amounts of lipids observed in patients with Neimann-Pick C, a disease caused by loss-of-function mutations in NPC1, the functional ortholog of Ncr1p; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 14562095]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 16138904]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0008158 - hedgehog receptor activity [Evidence IEA]; GO_function: GO:0046624 - sphingolipid transporter activity [Evidence IMP] [PMID 14970192]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0006869 - lipid transport [Evidence IEA]; GO_process: GO:0007165 - signal transduction [Evidence IEA]; GO_process: GO:0006665 - sphingolipid metabolic process [Evidence IEA]; GO_process: GO:0006665 - sphingolipid metabolic process [Evidence IMP] [PMID 14970192]; GO_process: GO:0006810 - transport [Evidence IEA]; Ncr1p 849751 NCR1 30037067 NCR1 Sugiyamaella lignohabitans Ncr1p XP_018736413.1 846302 D 796027 CDS AWJ20_4889 30037069 850799..851839 D 1 NC_031673.1 Nuclear SAM-dependent mono- and asymmetric methyltransferase; modifies hnRNPs, including Npl3p and Hrp1p, affecting their activity and nuclear export; methylates U1 snRNP protein Snp1p and ribosomal protein Rps2p; interacts genetically with genes encoding components of Rpd3(L) and this interaction is important for Rpd3 recruitment to the subtelomeric region; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 8668183]; GO_function: GO:0008168 - methyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0035242 - protein-arginine omega-N asymmetric methyltransferase activity [Evidence IDA,IMP] [PMID 8647869]; GO_function: GO:0035241 - protein-arginine omega-N monomethyltransferase activity [Evidence IDA,IMP] [PMID 8647869]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006406 - mRNA export from nucleus [Evidence IGI] [PMID 10952997]; GO_process: GO:0006406 - mRNA export from nucleus [Evidence IGI] [PMID 8668183]; GO_process: GO:0032259 - methylation [Evidence IEA]; GO_process: GO:0060567 - negative regulation of DNA-templated transcription, termination [Evidence IMP] [PMID 20053728]; GO_process: GO:0018216 - peptidyl-arginine methylation [Evidence IMP] [PMID 18515076]; GO_process: GO:0018216 - peptidyl-arginine methylation [Evidence IMP] [PMID 20035717]; GO_process: GO:0018216 - peptidyl-arginine methylation [Evidence IDA] [PMID 22997150]; GO_process: GO:0018216 - peptidyl-arginine methylation [Evidence IDA,IMP] [PMID 8647869]; GO_process: GO:0032968 - positive regulation of transcription elongation from RNA polymerase II promoter [Evidence IMP] [PMID 20053728]; GO_process: GO:0006479 - protein methylation [Evidence IEA]; protein-arginine omega-N methyltransferase HMT1 851839 HMT1 30037069 HMT1 Sugiyamaella lignohabitans protein-arginine omega-N methyltransferase HMT1 XP_018736414.1 850799 D 796027 CDS AWJ20_4890 30037071 complement(852123..855020) D 1 NC_031673.1 Vacuolar membrane cation-chloride cotransporter (CCC); likely mediates K+ and Cl- cotransport into the vacuole; has a role in potassium homeostasis and salt tolerance; similar to mammalian electroneutral Na(+)-(K+)-C1- cotransporter family; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 19001347]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0031166 - integral component of vacuolar membrane [Evidence IDA] [PMID 23022132]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA,IEA]; GO_function: GO:0015379 - potassium:chloride symporter activity [Evidence IMP,ISA] [PMID 23022132]; GO_process: GO:0055075 - potassium ion homeostasis [Evidence IGI] [PMID 23022132]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0034486 - vacuolar transmembrane transport [Evidence IMP] [PMID 23022132]; Vhc1p 855020 VHC1 30037071 VHC1 Sugiyamaella lignohabitans Vhc1p XP_018736415.1 852123 R 796027 CDS AWJ20_4891 30037072 complement(855368..856006) D 1 NC_031673.1 Vacuolar membrane cation-chloride cotransporter (CCC); likely mediates K+ and Cl- cotransport into the vacuole; has a role in potassium homeostasis and salt tolerance; similar to mammalian electroneutral Na(+)-(K+)-C1- cotransporter family; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 19001347]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0031166 - integral component of vacuolar membrane [Evidence IDA] [PMID 23022132]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA,IEA]; GO_function: GO:0015379 - potassium:chloride symporter activity [Evidence IMP,ISA] [PMID 23022132]; GO_process: GO:0055075 - potassium ion homeostasis [Evidence IGI] [PMID 23022132]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0034486 - vacuolar transmembrane transport [Evidence IMP] [PMID 23022132]; Vhc1p 856006 VHC1 30037072 VHC1 Sugiyamaella lignohabitans Vhc1p XP_018736416.1 855368 R 796027 CDS AWJ20_4892 30037073 complement(857008..858786) D 1 NC_031673.1 Methyltransferase; catalyzes the transfer of a methyl group from S-adenosylmethionine to the GpppN terminus of capped mRNA; nuclear protein that relocalizes to the cytosol in response to hypoxia; GO_component: GO:0016591 - DNA-directed RNA polymerase II, holoenzyme [Evidence IPI] [PMID 11018011]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 22932476]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IPI] [PMID 11018011]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22932476]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0004482 - mRNA (guanine-N7-)-methyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0004482 - mRNA (guanine-N7-)-methyltransferase activity [Evidence IDA,ISS] [PMID 7623811]; GO_function: GO:0008168 - methyltransferase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006370 - 7-methylguanosine mRNA capping [Evidence IEA,IEA]; GO_process: GO:0006370 - 7-methylguanosine mRNA capping [Evidence IDA] [PMID 7623811]; GO_process: GO:0036265 - RNA (guanine-N7)-methylation [Evidence IEA,IEA]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0032259 - methylation [Evidence IEA]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IMP] [PMID 14967145]; Abd1p 858786 ABD1 30037073 ABD1 Sugiyamaella lignohabitans Abd1p XP_018736417.1 857008 R 796027 CDS AWJ20_4893 30037074 complement(865737..866093) D 1 NC_031673.1 COX assembly mitochondrial protein 866093 CMC1 30037074 CMC1 Sugiyamaella lignohabitans COX assembly mitochondrial protein XP_018736418.1 865737 R 796027 CDS AWJ20_4894 30037075 866778..867416 D 1 NC_031673.1 spindle pole body protein Spc24 867416 spc24 30037075 spc24 Sugiyamaella lignohabitans spindle pole body protein Spc24 XP_018736419.1 866778 D 796027 CDS AWJ20_4895 30037076 complement(867689..869290) D 1 NC_031673.1 Uncharacterized protein YKL098W 869290 30037076 AWJ20_4895 Sugiyamaella lignohabitans Uncharacterized protein YKL098W XP_018736420.1 867689 R 796027 CDS AWJ20_4896 30037077 869640..870392 D 1 NC_031673.1 Subunit of U3-containing Small Subunit (SSU) processome complex; involved in production of 18S rRNA and assembly of small ribosomal subunit; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 12068309]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0032040 - small-subunit processome [Evidence IEA]; GO_component: GO:0032040 - small-subunit processome [Evidence IDA] [PMID 12068309]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0000480 - endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 15489292]; GO_process: GO:0000447 - endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 15489292]; GO_process: GO:0000472 - endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 15489292]; GO_process: GO:0006364 - rRNA processing [Evidence IEA,IEA]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; Utp11p 870392 UTP11 30037077 UTP11 Sugiyamaella lignohabitans Utp11p XP_018736421.1 869640 D 796027 CDS AWJ20_4897 30037078 complement(871443..873332) D 1 NC_031673.1 ATP-dependent RNA helicase; involved in the biogenesis of 40S and 60S ribosome subunits; localizes to both the nuclear periphery and nucleolus; highly enriched in nuclear pore complex fractions; constituent of 66S pre-ribosomal particles; GO_component: GO:0030686 - 90S preribosome [Evidence IDA] [PMID 12150911]; GO_component: GO:0005635 - nuclear envelope [Evidence IDA] [PMID 10684247]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 10684247]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 15049817]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 11583614]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 17443350]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004004 - ATP-dependent RNA helicase activity [Evidence IDA] [PMID 15718299]; GO_function: GO:0008026 - ATP-dependent helicase activity [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IDA] [PMID 15718299]; GO_function: GO:0008186 - RNA-dependent ATPase activity [Evidence IDA] [PMID 15718299]; GO_function: GO:0004386 - helicase activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0000463 - maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 23788678]; GO_process: GO:0000462 - maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 15049817]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0006364 - rRNA processing [Evidence IMP] [PMID 15242642]; GO_process: GO:0042273 - ribosomal large subunit biogenesis [Evidence IMP] [PMID 15049817]; GO_process: GO:0042273 - ribosomal large subunit biogenesis [Evidence IMP] [PMID 23788678]; GO_process: GO:0042274 - ribosomal small subunit biogenesis [Evidence IMP] [PMID 15049817]; GO_process: GO:0042274 - ribosomal small subunit biogenesis [Evidence IMP] [PMID 23788678]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; ATP-dependent RNA helicase HAS1 873332 HAS1 30037078 HAS1 Sugiyamaella lignohabitans ATP-dependent RNA helicase HAS1 XP_018736422.1 871443 R 796027 CDS AWJ20_4898 30037079 875646..877121 D 1 NC_031673.1 ATP-dependent RNA helicase; component of the mitochondrial degradosome along with the RNase Dss1p; the degradosome associates with the ribosome and mediates RNA turnover; also required during splicing of the COX1 AI5_beta intron; GO_component: GO:0000262 - mitochondrial chromosome [Evidence IDA] [PMID 21911497]; GO_component: GO:0045025 - mitochondrial degradosome [Evidence IDA] [PMID 12426313]; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004004 - ATP-dependent RNA helicase activity [Evidence IDA] [PMID 12426313]; GO_function: GO:0004004 - ATP-dependent RNA helicase activity [Evidence IDA] [PMID 17658549]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0008859 - exoribonuclease II activity [Evidence IDA] [PMID 17658549]; GO_function: GO:0004386 - helicase activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016817 - hydrolase activity, acting on acid anhydrides [Evidence IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0000372 - Group I intron splicing [Evidence IGI] [PMID 20064926]; GO_process: GO:0006264 - mitochondrial DNA replication [Evidence IMP] [PMID 21911497]; GO_process: GO:0000957 - mitochondrial RNA catabolic process [Evidence IMP] [PMID 12426313]; Suv3p 877121 SUV3 30037079 SUV3 Sugiyamaella lignohabitans Suv3p XP_018736423.1 875646 D 796027 CDS AWJ20_4899 30037080 877948..878958 D 1 NC_031673.1 Essential component of the Arp2/3 complex; Arp2/3 is a highly conserved actin nucleation center required for the motility and integrity of actin patches; involved in endocytosis and membrane growth and polarity; required for efficient Golgi-to-ER trafficking in COPI mutants; GO_component: GO:0005885 - Arp2/3 protein complex [Evidence IEA]; GO_component: GO:0005885 - Arp2/3 protein complex [Evidence IDA] [PMID 10377407]; GO_component: GO:0030479 - actin cortical patch [Evidence IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 11248049]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0005524 - ATP binding [Evidence IDA,IMP] [PMID 15657399]; GO_function: GO:0016887 - ATPase activity [Evidence IMP] [PMID 16862144]; GO_function: GO:0003779 - actin binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006200 - ATP catabolic process [Evidence IMP] [PMID 16862144]; GO_process: GO:0034314 - Arp2/3 complex-mediated actin nucleation [Evidence IEA]; GO_process: GO:0034314 - Arp2/3 complex-mediated actin nucleation [Evidence IMP] [PMID 16862144]; GO_process: GO:0032258 - CVT pathway [Evidence IMP] [PMID 18287533]; GO_process: GO:0007015 - actin filament organization [Evidence IMP] [PMID 10377407]; GO_process: GO:0030476 - ascospore wall assembly [Evidence IMP] [PMID 17118118]; GO_process: GO:0051654 - establishment of mitochondrion localization [Evidence IMP] [PMID 16107558]; GO_process: GO:0000001 - mitochondrion inheritance [Evidence IMP,IPI] [PMID 11248049]; GO_process: GO:0030833 - regulation of actin filament polymerization [Evidence IEA]; actin-related protein 2 878958 ARP2 30037080 ARP2 Sugiyamaella lignohabitans actin-related protein 2 XP_018736424.1 877948 D 796027 CDS AWJ20_4900 30037083 complement(879174..880973) D 1 NC_031673.1 uncharacterized protein 880973 30037083 AWJ20_4900 Sugiyamaella lignohabitans uncharacterized protein XP_018736425.1 879174 R 796027 CDS AWJ20_4902 30037085 884710..885375 D 1 NC_031673.1 checkpoint clamp complex protein Hus1 885375 hus1 30037085 hus1 Sugiyamaella lignohabitans checkpoint clamp complex protein Hus1 XP_018736426.1 884710 D 796027 CDS AWJ20_4903 30037086 complement(885684..886841) D 1 NC_031673.1 3-phosphoserine aminotransferase; catalyzes the formation of phosphoserine from 3-phosphohydroxypyruvate, required for serine and glycine biosynthesis; regulated by the general control of amino acid biosynthesis mediated by Gcn4p; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0004648 - O-phospho-L-serine:2-oxoglutarate aminotransferase activity [Evidence IEA,IEA]; GO_function: GO:0004648 - O-phospho-L-serine:2-oxoglutarate aminotransferase activity [Evidence IMP,ISS] [PMID 8017107]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0030170 - pyridoxal phosphate binding [Evidence IEA]; GO_function: GO:0008483 - transaminase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006564 - L-serine biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0006564 - L-serine biosynthetic process [Evidence IMP,ISS] [PMID 8017107]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0009113 - purine nucleobase biosynthetic process [Evidence IMP] [PMID 10509016]; GO_process: GO:0009070 - serine family amino acid biosynthetic process [Evidence IMP] [PMID 1326413]; O-phospho-L-serine:2-oxoglutarate transaminase 886841 SER1 30037086 SER1 Sugiyamaella lignohabitans O-phospho-L-serine:2-oxoglutarate transaminase XP_018736427.1 885684 R 796027 CDS AWJ20_4904 30037087 888611..889315 D 1 NC_031673.1 uncharacterized protein 889315 30037087 AWJ20_4904 Sugiyamaella lignohabitans uncharacterized protein XP_018736428.1 888611 D 796027 CDS AWJ20_4905 30037088 complement(889958..890764) D 1 NC_031673.1 Methyltransferase; methylates residue G1575 of 18S rRNA; required for rRNA processing and nuclear export of 40S ribosomal subunits independently of methylation activity; diploid mutant displays random budding pattern; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 18332120]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity [Evidence ISS] [PMID 9873020]; GO_function: GO:0008168 - methyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0016435 - rRNA (guanine) methyltransferase activity [Evidence IMP] [PMID 18332120]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0000282 - cellular bud site selection [Evidence IMP] [PMID 11452010]; GO_process: GO:0000447 - endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 18332120]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0032259 - methylation [Evidence IEA]; GO_process: GO:0070476 - rRNA (guanine-N7)-methylation [Evidence IMP] [PMID 18332120]; GO_process: GO:0000056 - ribosomal small subunit export from nucleus [Evidence IMP] [PMID 18332120]; Bud23p 890764 BUD23 30037088 BUD23 Sugiyamaella lignohabitans Bud23p XP_018736429.1 889958 R 796027 CDS AWJ20_4906 30037089 complement(892332..893027) D 1 NC_031673.1 Subunit E of the V1 domain of the vacuolar H+-ATPase (V-ATPase); V-ATPase is an electrogenic proton pump found throughout the endomembrane system; V1 domain has eight subunits; required for the V1 domain to assemble onto the vacuolar membrane; protein abundance increases in response to DNA replication stress; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence TAS] [PMID 11717306]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 23708375]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0033178 - proton-transporting two-sector ATPase complex, catalytic domain [Evidence IEA]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0000221 - vacuolar proton-transporting V-type ATPase, V1 domain [Evidence IDA] [PMID 16774922]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0046961 - proton-transporting ATPase activity, rotational mechanism [Evidence IEA]; GO_function: GO:0046961 - proton-transporting ATPase activity, rotational mechanism [Evidence TAS] [PMID 10224039]; GO_function: GO:0046961 - proton-transporting ATPase activity, rotational mechanism [Evidence TAS] [PMID 9442887]; GO_process: GO:0015991 - ATP hydrolysis coupled proton transport [Evidence IEA]; GO_process: GO:0006811 - ion transport [Evidence IEA]; GO_process: GO:0015992 - proton transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0007035 - vacuolar acidification [Evidence TAS] [PMID 10224039]; GO_process: GO:0007035 - vacuolar acidification [Evidence TAS] [PMID 9442887]; H(+)-transporting V1 sector ATPase subunit E 893027 VMA4 30037089 VMA4 Sugiyamaella lignohabitans H(+)-transporting V1 sector ATPase subunit E XP_018736430.1 892332 R 796027 CDS AWJ20_4907 30037090 894757..895827 D 1 NC_031673.1 uncharacterized protein 895827 30037090 AWJ20_4907 Sugiyamaella lignohabitans uncharacterized protein XP_018736431.1 894757 D 796027 CDS AWJ20_4908 30037091 899325..900770 D 1 NC_031673.1 Phosphatidylinositol transfer protein; has a potential role in regulating lipid and fatty acid metabolism under heme-depleted conditions; interacts specifically with thioredoxin peroxidase; may have a role in oxidative stress resistance; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 12869188]; GO_component: GO:0005768 - endosome [Evidence IEA,IEA]; GO_component: GO:0005768 - endosome [Evidence IDA] [PMID 10848624]; GO_component: GO:0005768 - endosome [Evidence IDA] [PMID 12869188]; GO_component: GO:0005811 - lipid particle [Evidence IDA] [PMID 17803462]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005628 - prospore membrane [Evidence IDA] [PMID 24390141]; GO_function: GO:0008525 - phosphatidylcholine transporter activity [Evidence IDA] [PMID 10848624]; GO_function: GO:0008526 - phosphatidylinositol transporter activity [Evidence IDA] [PMID 10848624]; GO_process: GO:0043001 - Golgi to plasma membrane protein transport [Evidence IGI] [PMID 10848624]; GO_process: GO:0006893 - Golgi to plasma membrane transport [Evidence IGI] [PMID 16126894]; GO_process: GO:0016042 - lipid catabolic process [Evidence IEA]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0006869 - lipid transport [Evidence IEA]; GO_process: GO:0045717 - negative regulation of fatty acid biosynthetic process [Evidence IDA,IGI,IMP] [PMID 17803462]; GO_process: GO:1901352 - negative regulation of phosphatidylglycerol biosynthetic process [Evidence IGI] [PMID 12869188]; GO_process: GO:0046488 - phosphatidylinositol metabolic process [Evidence IGI] [PMID 16262726]; GO_process: GO:0009395 - phospholipid catabolic process [Evidence IEA]; GO_process: GO:0015914 - phospholipid transport [Evidence IDA] [PMID 10848624]; GO_process: GO:2001247 - positive regulation of phosphatidylcholine biosynthetic process [Evidence IGI] [PMID 12869188]; GO_process: GO:0006810 - transport [Evidence IEA]; Csr1p 900770 CSR1 30037091 CSR1 Sugiyamaella lignohabitans Csr1p XP_018736432.1 899325 D 796027 CDS AWJ20_4909 30037092 903030..905768 D 1 NC_031673.1 Delta adaptin-like subunit of the clathrin associated protein complex; functions in transport of alkaline phosphatase to the vacuole via the alternate pathway; suppressor of loss of casein kinase 1 function; the clathrin associated protein complex is also known as AP-3; GO_component: GO:0030123 - AP-3 adaptor complex [Evidence IMP] [PMID 9250663]; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA,IEA,IEA]; GO_component: GO:0030665 - clathrin-coated vesicle membrane [Evidence IEA]; GO_component: GO:0031410 - cytoplasmic vesicle [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0030117 - membrane coat [Evidence IEA]; GO_function: GO:0005515 - protein binding [Evidence IPI] [PMID 10559961]; GO_function: GO:0008565 - protein transporter activity [Evidence IEA]; GO_process: GO:0006896 - Golgi to vacuole transport [Evidence IMP] [PMID 9335339]; GO_process: GO:0006886 - intracellular protein transport [Evidence IEA]; GO_process: GO:0006623 - protein targeting to vacuole [Evidence IMP] [PMID 17895371]; GO_process: GO:0015031 - protein transport [Evidence IEA,IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IEA]; Apl5p 905768 APL5 30037092 APL5 Sugiyamaella lignohabitans Apl5p XP_018736433.1 903030 D 796027 CDS AWJ20_4910 30037094 906218..907750 D 1 NC_031673.1 Protein that stimulates strand exchange; stimulates strand exchange by facilitating Rad51p binding to single-stranded DNA; anneals complementary single-stranded DNA; involved in the repair of double-strand breaks in DNA during vegetative growth and meiosis and UV induced sister chromatid recombination; GO_component: GO:0000228 - nuclear chromosome [Evidence IDA] [PMID 12766777]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11459964]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_function: GO:0000150 - recombinase activity [Evidence IDA] [PMID 15205482]; GO_process: GO:0006277 - DNA amplification [Evidence IMP] [PMID 23271978]; GO_process: GO:0000730 - DNA recombinase assembly [Evidence IDA] [PMID 11459983]; GO_process: GO:0006310 - DNA recombination [Evidence IEA,IEA]; GO_process: GO:0006281 - DNA repair [Evidence IEA,IEA]; GO_process: GO:0000733 - DNA strand renaturation [Evidence IDA] [PMID 9619627]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0000727 - double-strand break repair via break-induced replication [Evidence IMP] [PMID 17096599]; GO_process: GO:0000724 - double-strand break repair via homologous recombination [Evidence IMP] [PMID 17096599]; GO_process: GO:0000724 - double-strand break repair via homologous recombination [Evidence IMP] [PMID 24190138]; GO_process: GO:0045002 - double-strand break repair via single-strand annealing [Evidence IGI] [PMID 11606529]; GO_process: GO:0000709 - meiotic joint molecule formation [Evidence IGI,IMP] [PMID 18313389]; GO_process: GO:0006301 - postreplication repair [Evidence IMP] [PMID 7038396]; GO_process: GO:0000722 - telomere maintenance via recombination [Evidence IMP] [PMID 11238918]; recombinase RAD52 907750 RAD52 30037094 RAD52 Sugiyamaella lignohabitans recombinase RAD52 XP_018736434.1 906218 D 796027 CDS AWJ20_4911 30037095 complement(907976..908749) D 1 NC_031673.1 Beta subunit of the translation initiation factor eIF2B; the guanine-nucleotide exchange factor for eIF2; activity subsequently regulated by phosphorylated eIF2; first identified as a negative regulator of GCN4 expression; GO_component: GO:0005851 - eukaryotic translation initiation factor 2B complex [Evidence IDA,IGI,IPI] [PMID 8336705]; GO_component: GO:0005851 - eukaryotic translation initiation factor 2B complex [Evidence IMP] [PMID 8441423]; GO_component: GO:0005851 - eukaryotic translation initiation factor 2B complex [Evidence IDA,IPI] [PMID 8506384]; GO_component: GO:0032045 - guanyl-nucleotide exchange factor complex [Evidence IPI] [PMID 8336705]; GO_component: GO:0032045 - guanyl-nucleotide exchange factor complex [Evidence IDA] [PMID 8506384]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0030234 - enzyme regulator activity [Evidence IGI] [PMID 8164676]; GO_function: GO:0030234 - enzyme regulator activity [Evidence IGI,IPI] [PMID 8887689]; GO_function: GO:0030234 - enzyme regulator activity [Evidence IMP] [PMID 9032257]; GO_function: GO:0005085 - guanyl-nucleotide exchange factor activity [Evidence IPI] [PMID 8336705]; GO_function: GO:0005085 - guanyl-nucleotide exchange factor activity [Evidence IDA] [PMID 8506384]; GO_function: GO:0003743 - translation initiation factor activity [Evidence IEA]; GO_function: GO:0003743 - translation initiation factor activity [Evidence IGI,IPI] [PMID 8336705]; GO_process: GO:0044237 - cellular metabolic process [Evidence IEA]; GO_process: GO:0006417 - regulation of translation [Evidence IEA]; GO_process: GO:0006446 - regulation of translational initiation [Evidence IGI] [PMID 8164676]; GO_process: GO:0006446 - regulation of translational initiation [Evidence IDA] [PMID 8506384]; GO_process: GO:0006446 - regulation of translational initiation [Evidence IGI,IPI] [PMID 8887689]; GO_process: GO:0006446 - regulation of translational initiation [Evidence IMP] [PMID 9032257]; GO_process: GO:0006412 - translation [Evidence IEA]; GO_process: GO:0006413 - translational initiation [Evidence IEA]; translation initiation factor eIF2B subunit beta 908749 GCD7 30037095 GCD7 Sugiyamaella lignohabitans translation initiation factor eIF2B subunit beta XP_018736435.1 907976 R 796027 CDS AWJ20_4912 30037096 909623..910453 D 1 NC_031673.1 uncharacterized protein 910453 30037096 AWJ20_4912 Sugiyamaella lignohabitans uncharacterized protein XP_018736436.1 909623 D 796027 CDS AWJ20_4913 30037097 911509..912012 D 1 NC_031673.1 Monocarboxylate/proton symporter of the plasma membrane; transport activity is dependent on the pH gradient across the membrane; mediates high-affinity uptake of carbon sources lactate, pyuvate, and acetate, and also of the micronutrient selenite, whose structure mimics that of monocarboxylates; expression and localization are tightly regulated, with transcription repression, mRNA degradation, and protein endocytosis and degradation all occurring in the presence of glucose; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 17710650]; GO_function: GO:0015144 - carbohydrate transmembrane transporter activity [Evidence IEA]; GO_function: GO:0015355 - secondary active monocarboxylate transmembrane transporter activity [Evidence IMP] [PMID 17710650]; GO_function: GO:0097079 - selenite:proton symporter activity [Evidence IMP] [PMID 20861301]; GO_function: GO:0022857 - transmembrane transporter activity [Evidence IEA]; GO_process: GO:0034219 - carbohydrate transmembrane transport [Evidence IEA]; GO_process: GO:0035879 - plasma membrane lactate transport [Evidence IMP] [PMID 10198029]; GO_process: GO:0035879 - plasma membrane lactate transport [Evidence IMP] [PMID 17710650]; GO_process: GO:0006849 - plasma membrane pyruvate transport [Evidence IMP] [PMID 17710650]; GO_process: GO:0097080 - plasma membrane selenite transport [Evidence IMP] [PMID 20861301]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Jen1p 912012 JEN1 30037097 JEN1 Sugiyamaella lignohabitans Jen1p XP_018736437.1 911509 D 796027 CDS AWJ20_4914 30037098 912067..913065 D 1 NC_031673.1 Monocarboxylate/proton symporter of the plasma membrane; transport activity is dependent on the pH gradient across the membrane; mediates high-affinity uptake of carbon sources lactate, pyuvate, and acetate, and also of the micronutrient selenite, whose structure mimics that of monocarboxylates; expression and localization are tightly regulated, with transcription repression, mRNA degradation, and protein endocytosis and degradation all occurring in the presence of glucose; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 17710650]; GO_function: GO:0015144 - carbohydrate transmembrane transporter activity [Evidence IEA]; GO_function: GO:0015355 - secondary active monocarboxylate transmembrane transporter activity [Evidence IMP] [PMID 17710650]; GO_function: GO:0097079 - selenite:proton symporter activity [Evidence IMP] [PMID 20861301]; GO_function: GO:0022857 - transmembrane transporter activity [Evidence IEA]; GO_process: GO:0034219 - carbohydrate transmembrane transport [Evidence IEA]; GO_process: GO:0035879 - plasma membrane lactate transport [Evidence IMP] [PMID 10198029]; GO_process: GO:0035879 - plasma membrane lactate transport [Evidence IMP] [PMID 17710650]; GO_process: GO:0006849 - plasma membrane pyruvate transport [Evidence IMP] [PMID 17710650]; GO_process: GO:0097080 - plasma membrane selenite transport [Evidence IMP] [PMID 20861301]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Jen1p 913065 JEN1 30037098 JEN1 Sugiyamaella lignohabitans Jen1p XP_018736438.1 912067 D 796027 CDS AWJ20_4915 30037099 913920..914177 D 1 NC_031673.1 uncharacterized protein 914177 30037099 AWJ20_4915 Sugiyamaella lignohabitans uncharacterized protein XP_018736439.1 913920 D 796027 CDS AWJ20_4916 30037100 complement(914375..915817) D 1 NC_031673.1 Component of U4/U6-U5 snRNP complex; involved in second catalytic step of splicing; participates in spliceosomal assembly through its interaction with U1 snRNA; largest and most evolutionarily conserved protein of the spliceosome; mutations in its human ortholog, PRPF8, cause Retinitis pigmentosa and missplicing in Myelodysplastic syndrome; GO_component: GO:0046540 - U4/U6 x U5 tri-snRNP complex [Evidence IDA] [PMID 10377396]; GO_component: GO:0046540 - U4/U6 x U5 tri-snRNP complex [Evidence IDA] [PMID 10449419]; GO_component: GO:0046540 - U4/U6 x U5 tri-snRNP complex [Evidence IDA] [PMID 17934474]; GO_component: GO:0005682 - U5 snRNP [Evidence IDA] [PMID 11720284]; GO_component: GO:0005682 - U5 snRNP [Evidence IDA] [PMID 11720285]; GO_component: GO:0005682 - U5 snRNP [Evidence IDA] [PMID 17934474]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 17934474]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005681 - spliceosomal complex [Evidence IEA,IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA,IEA]; GO_function: GO:0030619 - U1 snRNA binding [Evidence IDA] [PMID 23393194]; GO_function: GO:0030620 - U2 snRNA binding [Evidence IDA] [PMID 23393194]; GO_function: GO:0030623 - U5 snRNA binding [Evidence IEA]; GO_function: GO:0030623 - U5 snRNA binding [Evidence IDA] [PMID 23393194]; GO_function: GO:0030623 - U5 snRNA binding [Evidence IDA] [PMID 9848662]; GO_function: GO:0017070 - U6 snRNA binding [Evidence IEA]; GO_function: GO:0017070 - U6 snRNA binding [Evidence IDA] [PMID 23393194]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0097157 - pre-mRNA intronic binding [Evidence IDA] [PMID 23393194]; GO_function: GO:0000386 - second spliceosomal transesterification activity [Evidence IMP] [PMID 17626844]; GO_process: GO:0008380 - RNA splicing [Evidence IEA]; GO_process: GO:0000350 - generation of catalytic spliceosome for second transesterification step [Evidence IMP] [PMID 22408182]; GO_process: GO:0000389 - mRNA 3'-splice site recognition [Evidence IMP] [PMID 10628969]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0000398 - mRNA splicing, via spliceosome [Evidence IEA]; GO_process: GO:0000244 - spliceosomal tri-snRNP complex assembly [Evidence IMP] [PMID 17934474]; GO_process: GO:0000244 - spliceosomal tri-snRNP complex assembly [Evidence IDA] [PMID 23393194]; U4/U6-U5 snRNP complex component PRP8 915817 PRP8 30037100 PRP8 Sugiyamaella lignohabitans U4/U6-U5 snRNP complex component PRP8 XP_018736440.1 914375 R 796027 CDS AWJ20_4917 30037101 complement(916027..921720) D 1 NC_031673.1 Component of U4/U6-U5 snRNP complex; involved in second catalytic step of splicing; participates in spliceosomal assembly through its interaction with U1 snRNA; largest and most evolutionarily conserved protein of the spliceosome; mutations in its human ortholog, PRPF8, cause Retinitis pigmentosa and missplicing in Myelodysplastic syndrome; GO_component: GO:0046540 - U4/U6 x U5 tri-snRNP complex [Evidence IDA] [PMID 10377396]; GO_component: GO:0046540 - U4/U6 x U5 tri-snRNP complex [Evidence IDA] [PMID 10449419]; GO_component: GO:0046540 - U4/U6 x U5 tri-snRNP complex [Evidence IDA] [PMID 17934474]; GO_component: GO:0005682 - U5 snRNP [Evidence IDA] [PMID 11720284]; GO_component: GO:0005682 - U5 snRNP [Evidence IDA] [PMID 11720285]; GO_component: GO:0005682 - U5 snRNP [Evidence IDA] [PMID 17934474]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 17934474]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005681 - spliceosomal complex [Evidence IEA,IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA,IEA]; GO_function: GO:0030619 - U1 snRNA binding [Evidence IDA] [PMID 23393194]; GO_function: GO:0030620 - U2 snRNA binding [Evidence IDA] [PMID 23393194]; GO_function: GO:0030623 - U5 snRNA binding [Evidence IEA]; GO_function: GO:0030623 - U5 snRNA binding [Evidence IDA] [PMID 23393194]; GO_function: GO:0030623 - U5 snRNA binding [Evidence IDA] [PMID 9848662]; GO_function: GO:0017070 - U6 snRNA binding [Evidence IEA]; GO_function: GO:0017070 - U6 snRNA binding [Evidence IDA] [PMID 23393194]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0097157 - pre-mRNA intronic binding [Evidence IDA] [PMID 23393194]; GO_function: GO:0000386 - second spliceosomal transesterification activity [Evidence IMP] [PMID 17626844]; GO_process: GO:0008380 - RNA splicing [Evidence IEA]; GO_process: GO:0000350 - generation of catalytic spliceosome for second transesterification step [Evidence IMP] [PMID 22408182]; GO_process: GO:0000389 - mRNA 3'-splice site recognition [Evidence IMP] [PMID 10628969]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0000398 - mRNA splicing, via spliceosome [Evidence IEA]; GO_process: GO:0000244 - spliceosomal tri-snRNP complex assembly [Evidence IMP] [PMID 17934474]; GO_process: GO:0000244 - spliceosomal tri-snRNP complex assembly [Evidence IDA] [PMID 23393194]; U4/U6-U5 snRNP complex component PRP8 921720 PRP8 30037101 PRP8 Sugiyamaella lignohabitans U4/U6-U5 snRNP complex component PRP8 XP_018736441.1 916027 R 796027 CDS AWJ20_4918 30037102 complement(926261..927481) D 1 NC_031673.1 Protein required for localizing proteasomes to the nucleus; involved in cotranslational protein degradation; mediates interaction between nuclear import factor Srp1p and the proteasome; Sts1p and Srp1p couple proteasomes to nascent polypeptides emerging from the ribosome for cotranslational degradation; involved in ubiquitin-mediated protein degradation; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 10913188]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0007059 - chromosome segregation [Evidence IMP] [PMID 8065366]; GO_process: GO:0071630 - nucleus-associated proteasomal ubiquitin-dependent protein catabolic process [Evidence IEA]; GO_process: GO:0071630 - nucleus-associated proteasomal ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 21075847]; GO_process: GO:0031144 - proteasome localization [Evidence IEA]; GO_process: GO:0031144 - proteasome localization [Evidence IMP] [PMID 21075847]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Sts1p 927481 STS1 30037102 STS1 Sugiyamaella lignohabitans Sts1p XP_018736442.1 926261 R 796027 CDS AWJ20_4919 30037103 join(928588..928674,928835..930895) D 1 NC_031673.1 Threonyl-tRNA synthetase; essential cytoplasmic protein; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IMP] [PMID 2995918]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004812 - aminoacyl-tRNA ligase activity [Evidence IEA,IEA]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0016876 - ligase activity, forming aminoacyl-tRNA and related compounds [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_function: GO:0004829 - threonine-tRNA ligase activity [Evidence IEA,IEA]; GO_function: GO:0004829 - threonine-tRNA ligase activity [Evidence ISA] [PMID 2995918]; GO_function: GO:0004829 - threonine-tRNA ligase activity [Evidence IDA] [PMID 8143729]; GO_process: GO:0002181 - cytoplasmic translation [Evidence IMP] [PMID 10471698]; GO_process: GO:0043039 - tRNA aminoacylation [Evidence IEA]; GO_process: GO:0006418 - tRNA aminoacylation for protein translation [Evidence IEA]; GO_process: GO:0006435 - threonyl-tRNA aminoacylation [Evidence IEA]; GO_process: GO:0006435 - threonyl-tRNA aminoacylation [Evidence ISA] [PMID 2995918]; GO_process: GO:0006435 - threonyl-tRNA aminoacylation [Evidence IDA] [PMID 8143729]; GO_process: GO:0006412 - translation [Evidence IEA]; threonine--tRNA ligase THS1 930895 THS1 30037103 THS1 Sugiyamaella lignohabitans threonine--tRNA ligase THS1 XP_018736443.1 928588 D 796027 CDS AWJ20_4920 30037105 complement(931120..932925) D 1 NC_031673.1 WD40 repeat-containing subunit of Set3C histone deacetylase complex; complex represses early/middle sporulation genes; antagonizes telomeric silencing; binds specifically to the Sir4p N-terminus; GO_component: GO:0070210 - Rpd3L-Expanded complex [Evidence IDA] [PMID 19040720]; GO_component: GO:0034967 - Set3 complex [Evidence IDA] [PMID 11711434]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9651685]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0016568 - chromatin modification [Evidence IEA]; GO_process: GO:0016575 - histone deacetylation [Evidence IDA] [PMID 11711434]; GO_process: GO:0031939 - negative regulation of chromatin silencing at telomere [Evidence IMP,IPI] [PMID 9651685]; GO_process: GO:0045835 - negative regulation of meiosis [Evidence IPI] [PMID 11711434]; GO_process: GO:0032874 - positive regulation of stress-activated MAPK cascade [Evidence IMP] [PMID 18487345]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IMP] [PMID 19379692]; Sif2p 932925 SIF2 30037105 SIF2 Sugiyamaella lignohabitans Sif2p XP_018736444.1 931120 R 796027 CDS AWJ20_4921 30037106 934139..936700 D 1 NC_031673.1 Exocyst subunit with dual roles in exocytosis and spliceosome assembly; subunit of the the exocyst complex which mediates polarized targeting and tethering of post-Golgi secretory vesicles to active sites of exocytosis at the plasma membrane (PM) prior to SNARE-mediated fusion; required for exocyst assembly and targeting the complex to specific sites on the bud tip PM; associates the U1 snRNP; role in pre-mRNA splicing and prespliceosome formation; possible Cdc28 substrate; GO_component: GO:0005933 - cellular bud [Evidence IEA]; GO_component: GO:0005935 - cellular bud neck [Evidence IEA]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 10438536]; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 10438536]; GO_component: GO:0031410 - cytoplasmic vesicle [Evidence IEA]; GO_component: GO:0000145 - exocyst [Evidence IDA] [PMID 10438536]; GO_component: GO:0000131 - incipient cellular bud site [Evidence IDA] [PMID 10438536]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 19053807]; GO_component: GO:0005628 - prospore membrane [Evidence IDA] [PMID 24390141]; GO_component: GO:0030133 - transport vesicle [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006893 - Golgi to plasma membrane transport [Evidence IMP] [PMID 10438536]; GO_process: GO:0006893 - Golgi to plasma membrane transport [Evidence IMP] [PMID 15788396]; GO_process: GO:0001927 - exocyst assembly [Evidence IMP] [PMID 15788396]; GO_process: GO:0051601 - exocyst localization [Evidence IMP] [PMID 15788396]; GO_process: GO:0006887 - exocytosis [Evidence IEA]; GO_process: GO:0006887 - exocytosis [Evidence IGI,IMP] [PMID 10438536]; GO_process: GO:0006887 - exocytosis [Evidence IMP] [PMID 15788396]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0000245 - spliceosomal complex assembly [Evidence IMP,IPI] [PMID 11425851]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0090522 - vesicle tethering involved in exocytosis [Evidence IC] [PMID 10438536]; Exo84p 936700 EXO84 30037106 EXO84 Sugiyamaella lignohabitans Exo84p XP_018736445.1 934139 D 796027 CDS AWJ20_4922 30037107 complement(937041..938000) D 1 NC_031673.1 Non-essential sumoylated hypothetical protein; similar to components of human SWI/SNF complex including SMRD3; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm, nucleus and nucleolus; TRI1 has a paralog, UAF30, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Tri1p 938000 TRI1 30037107 TRI1 Sugiyamaella lignohabitans Tri1p XP_018736446.1 937041 R 796027 CDS AWJ20_4923 30037108 complement(join(938658..940304,940996..941835)) D 1 NC_031673.1 Subunit of the CoA-Synthesizing Protein Complex (CoA-SPC); subunits of this complex are: Cab2p, Cab3p, Cab4p, Cab5p, Sis2p and Vhs3p; probable phosphopantothenoylcysteine synthetase (PPCS), which catalyzes the second step of coenzyme A biosynthesis from pantothenate; null mutant lethality is complemented by E. coli coaBC (encoding a bifunctional enzyme with PPCS activity); GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14690591]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14690591]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0004632 - phosphopantothenate--cysteine ligase activity [Evidence IEA]; GO_function: GO:0004632 - phosphopantothenate--cysteine ligase activity [Evidence ISS] [PMID 11923312]; GO_process: GO:0015937 - coenzyme A biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0015937 - coenzyme A biosynthetic process [Evidence ISS] [PMID 11923312]; GO_process: GO:0015937 - coenzyme A biosynthetic process [Evidence IGI] [PMID 19266201]; phosphopantothenate--cysteine ligase CAB2 941835 CAB2 30037108 CAB2 Sugiyamaella lignohabitans phosphopantothenate--cysteine ligase CAB2 XP_018736447.1 938658 R 796027 CDS AWJ20_4924 30037109 949197..950243 D 1 NC_031673.1 Poly (A)+ RNA-binding protein; abundant mRNP-component protein that binds mRNA and is required for stability of many mRNAs; component of glucose deprivation induced stress granules, involved in P-body-dependent granule assembly; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 8413212]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 8413213]; GO_component: GO:0000932 - cytoplasmic mRNA processing body [Evidence IDA] [PMID 23222640]; GO_component: GO:0010494 - cytoplasmic stress granule [Evidence IDA] [PMID 18981231]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 8413212]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 15964806]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_function: GO:0003729 - mRNA binding [Evidence IDA,IMP] [PMID 8413212]; GO_function: GO:0003729 - mRNA binding [Evidence IDA,IMP] [PMID 8413213]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0008266 - poly(U) RNA binding [Evidence IDA] [PMID 8413213]; GO_process: GO:0000184 - nuclear-transcribed mRNA catabolic process, nonsense-mediated decay [Evidence IDA] [PMID 10892745]; GO_process: GO:0043488 - regulation of mRNA stability [Evidence IMP] [PMID 15964806]; GO_process: GO:0034063 - stress granule assembly [Evidence IMP] [PMID 18981231]; Pub1p 950243 PUB1 30037109 PUB1 Sugiyamaella lignohabitans Pub1p XP_018736448.1 949197 D 796027 CDS AWJ20_4925 30037110 951662..953401 D 1 NC_031673.1 Ubiquitin-specific protease; removes ubiquitin from ubiquitinated proteins; cleaves at the C terminus of ubiquitin fusions irrespective of their size; capable of cleaving polyubiquitin chains; GO_component: GO:0005737 - cytoplasm [Evidence IC] [PMID 1429680]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 15635103]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 15635103]; GO_function: GO:0008234 - cysteine-type peptidase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_function: GO:0004843 - ubiquitin-specific protease activity [Evidence IDA] [PMID 1429680]; GO_process: GO:0016579 - protein deubiquitination [Evidence IDA] [PMID 1429680]; GO_process: GO:0016579 - protein deubiquitination [Evidence IDA] [PMID 2050695]; GO_process: GO:0006508 - proteolysis [Evidence IEA]; GO_process: GO:0006511 - ubiquitin-dependent protein catabolic process [Evidence IEA]; Ubp1p 953401 UBP1 30037110 UBP1 Sugiyamaella lignohabitans Ubp1p XP_018736449.1 951662 D 796027 CDS AWJ20_4926 30037111 complement(954209..955822) D 1 NC_031673.1 Glycerol kinase; converts glycerol to glycerol-3-phosphate; glucose repression of expression is mediated by Adr1p and Ino2p-Ino4p; derepression of expression on non-fermentable carbon sources is mediated by Opi1p and Rsf1p; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 17054397]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0004370 - glycerol kinase activity [Evidence IEA,IEA]; GO_function: GO:0004370 - glycerol kinase activity [Evidence IMP,ISS] [PMID 8358828]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016773 - phosphotransferase activity, alcohol group as acceptor [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0005975 - carbohydrate metabolic process [Evidence IEA]; GO_process: GO:0019563 - glycerol catabolic process [Evidence IEA]; GO_process: GO:0006071 - glycerol metabolic process [Evidence IEA]; GO_process: GO:0006071 - glycerol metabolic process [Evidence TAS] [PMID 8358828]; GO_process: GO:0006072 - glycerol-3-phosphate metabolic process [Evidence IEA]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; glycerol kinase 955822 GUT1 30037111 GUT1 Sugiyamaella lignohabitans glycerol kinase XP_018736450.1 954209 R 796027 CDS AWJ20_4927 30037112 complement(961417..962115) D 1 NC_031673.1 uncharacterized protein 962115 30037112 AWJ20_4927 Sugiyamaella lignohabitans uncharacterized protein XP_018736451.1 961417 R 796027 CDS AWJ20_4928 30037113 963337..963648 D 1 NC_031673.1 Mpc1p 963648 FMP37 30037113 FMP37 Sugiyamaella lignohabitans Mpc1p XP_018736452.1 963337 D 796027 CDS AWJ20_4929 30037114 complement(963887..964933) D 1 NC_031673.1 uncharacterized protein 964933 30037114 AWJ20_4929 Sugiyamaella lignohabitans uncharacterized protein XP_018736453.1 963887 R 796027 CDS AWJ20_4930 30037116 complement(965985..967706) D 1 NC_031673.1 uncharacterized protein 967706 30037116 AWJ20_4930 Sugiyamaella lignohabitans uncharacterized protein XP_018736454.1 965985 R 796027 CDS AWJ20_4931 30037117 complement(968037..968618) D 1 NC_031673.1 Mitochondrial phosphatidylglycerophosphatase (PGP phosphatase); dephosphorylates phosphatidylglycerolphosphate to generate phosphatidylglycerol, an essential step during cardiolipin biosynthesis; null mutant is sensitive to tunicamycin, DTT; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005759 - mitochondrial matrix [Evidence IDA] [PMID 20485265]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0008962 - phosphatidylglycerophosphatase activity [Evidence IEA]; GO_function: GO:0008962 - phosphatidylglycerophosphatase activity [Evidence IDA,IGI,IMP] [PMID 20485265]; GO_process: GO:0032049 - cardiolipin biosynthetic process [Evidence IMP] [PMID 20485265]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0006655 - phosphatidylglycerol biosynthetic process [Evidence IEA]; GO_process: GO:0008654 - phospholipid biosynthetic process [Evidence IEA]; GO_process: GO:0046838 - phosphorylated carbohydrate dephosphorylation [Evidence IMP] [PMID 20485265]; Gep4p 968618 GEP4 30037117 GEP4 Sugiyamaella lignohabitans Gep4p XP_018736455.1 968037 R 796027 CDS AWJ20_4932 30037118 complement(972542..973846) D 1 NC_031673.1 uncharacterized protein 973846 30037118 AWJ20_4932 Sugiyamaella lignohabitans uncharacterized protein XP_018736456.1 972542 R 796027 CDS AWJ20_4933 30037119 complement(975920..979045) D 1 NC_031673.1 DNA-binding transcription factor CRZ1 979045 CRZ1 30037119 CRZ1 Sugiyamaella lignohabitans DNA-binding transcription factor CRZ1 XP_018736457.1 975920 R 796027 CDS AWJ20_4934 30037120 982375..984192 D 1 NC_031673.1 Subunit of GID Complex that binds directly to central component Vid30p; GID complex is involved in proteasome-dependent catabolite inactivation of fructose-1,6-bisphosphatase; Gid7p contains six WD40 repeats; computational analysis suggests that Gid7p and Moh1p have similar functions; GO_component: GO:0034657 - GID complex [Evidence IDA] [PMID 18508925]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0045721 - negative regulation of gluconeogenesis [Evidence IMP] [PMID 12686616]; GO_process: GO:0043161 - proteasome-mediated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 12686616]; glucose-induced degradation complex subunit GID7 984192 GID7 30037120 GID7 Sugiyamaella lignohabitans glucose-induced degradation complex subunit GID7 XP_018736458.1 982375 D 796027 CDS AWJ20_4935 30037121 complement(984745..986340) D 1 NC_031673.1 D-Arabinono-1,4-lactone oxidase; catalyzes the final step in biosynthesis of dehydro-D-arabinono-1,4-lactone, which is protective against oxidative stress; GO_component: GO:0031307 - integral component of mitochondrial outer membrane [Evidence IDA] [PMID 16689936]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0031966 - mitochondrial membrane [Evidence IEA]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IDA] [PMID 16407407]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 10094636]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0003885 - D-arabinono-1,4-lactone oxidase activity [Evidence IEA,IEA]; GO_function: GO:0003885 - D-arabinono-1,4-lactone oxidase activity [Evidence IDA] [PMID 10094636]; GO_function: GO:0008762 - UDP-N-acetylmuramate dehydrogenase activity [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0016614 - oxidoreductase activity, acting on CH-OH group of donors [Evidence IEA]; GO_function: GO:0016899 - oxidoreductase activity, acting on the CH-OH group of donors, oxygen as acceptor [Evidence IEA]; GO_process: GO:0009058 - biosynthetic process [Evidence IEA]; GO_process: GO:0034599 - cellular response to oxidative stress [Evidence IMP] [PMID 10094636]; GO_process: GO:0070485 - dehydro-D-arabinono-1,4-lactone biosynthetic process [Evidence IMP] [PMID 10094636]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; D-arabinono-1,4-lactone oxidase 986340 ALO1 30037121 ALO1 Sugiyamaella lignohabitans D-arabinono-1,4-lactone oxidase XP_018736459.1 984745 R 796027 CDS AWJ20_4936 30037122 986836..988308 D 1 NC_031673.1 uncharacterized protein 988308 30037122 AWJ20_4936 Sugiyamaella lignohabitans uncharacterized protein XP_018736460.1 986836 D 796027 CDS AWJ20_4937 30037123 994711..996717 D 1 NC_031673.1 phosphate transporter PHO84 996717 PHO84 30037123 PHO84 Sugiyamaella lignohabitans phosphate transporter PHO84 XP_018736461.1 994711 D 796027 CDS AWJ20_4938 30037124 complement(998023..998436) D 1 NC_031673.1 Putative checkpoint factor in transcription; binds to U2 snRNA and Prp11p; may be involved in U2 snRNA folding; contains two RNA recognition motifs (RRMs); GO_component: GO:0005686 - U2 snRNP [Evidence TAS] [PMID 11804584]; GO_component: GO:0005681 - spliceosomal complex [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IMP,ISS] [PMID 9710584]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0008380 - RNA splicing [Evidence IEA]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0000398 - mRNA splicing, via spliceosome [Evidence IGI,IPI] [PMID 9710584]; Cus2p 998436 CUS2 30037124 CUS2 Sugiyamaella lignohabitans Cus2p XP_018736462.1 998023 R 796027 CDS AWJ20_4939 30037125 complement(998592..999323) D 1 NC_031673.1 Putative checkpoint factor in transcription; binds to U2 snRNA and Prp11p; may be involved in U2 snRNA folding; contains two RNA recognition motifs (RRMs); GO_component: GO:0005686 - U2 snRNP [Evidence TAS] [PMID 11804584]; GO_component: GO:0005681 - spliceosomal complex [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IMP,ISS] [PMID 9710584]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0008380 - RNA splicing [Evidence IEA]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0000398 - mRNA splicing, via spliceosome [Evidence IGI,IPI] [PMID 9710584]; Cus2p 999323 CUS2 30037125 CUS2 Sugiyamaella lignohabitans Cus2p XP_018736463.1 998592 R 796027 CDS AWJ20_4940 30037127 complement(999602..1001269) D 1 NC_031673.1 Polyamine transporter of the major facilitator superfamily; member of the 12-spanner drug:H(+) antiporter DHA1 family; specific for spermine; localizes to the plasma membrane; TPO3 has a paralog, TPO2, that arose from the whole genome duplication; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IMP] [PMID 11171066]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 12562762]; GO_function: GO:0015297 - antiporter activity [Evidence IEA]; GO_function: GO:0000297 - spermine transmembrane transporter activity [Evidence IMP] [PMID 11171066]; GO_process: GO:0000296 - spermine transport [Evidence IMP] [PMID 11171066]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Tpo3p 1001269 TPO3 30037127 TPO3 Sugiyamaella lignohabitans Tpo3p XP_018736464.1 999602 R 796027 CDS AWJ20_4941 30037128 complement(1003096..1003914) D 1 NC_031673.1 hydrophobic surface binding protein A 1003914 30037128 AWJ20_4941 Sugiyamaella lignohabitans hydrophobic surface binding protein A XP_018736465.1 1003096 R 796027 CDS AWJ20_4942 30037129 complement(1010664..1012022) D 1 NC_031673.1 uncharacterized protein 1012022 30037129 AWJ20_4942 Sugiyamaella lignohabitans uncharacterized protein XP_018736466.1 1010664 R 796027 CDS AWJ20_4943 30037130 complement(1016263..1019097) D 1 NC_031673.1 mitogen-activated protein kinase kinase kinase STE11 1019097 STE11 30037130 STE11 Sugiyamaella lignohabitans mitogen-activated protein kinase kinase kinase STE11 XP_018736467.1 1016263 R 796027 CDS AWJ20_4944 30037131 1023031..1025604 D 1 NC_031673.1 Nucleotide excision repair (NER) protein; binds damaged DNA during NER; binds DNA in an ATP-dependent manner (with Rad7p) during NER; required for NER of non-transcribed chromatin; subunit of Nucleotide Excision Repair Factor 4 (NEF4) and the Elongin-Cullin-Socs (ECS) ligase complex; GO_component: GO:0031463 - Cul3-RING ubiquitin ligase complex [Evidence IDA] [PMID 16675952]; GO_component: GO:0000113 - nucleotide-excision repair factor 4 complex [Evidence IDA] [PMID 9497356]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0008094 - DNA-dependent ATPase activity [Evidence IDA] [PMID 9497356]; GO_function: GO:0003684 - damaged DNA binding [Evidence IDA] [PMID 9497356]; GO_function: GO:0004386 - helicase activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA,IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence IDA] [PMID 16675952]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0006281 - DNA repair [Evidence IEA]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0000715 - nucleotide-excision repair, DNA damage recognition [Evidence IDA,IMP] [PMID 15177043]; GO_process: GO:0042787 - protein ubiquitination involved in ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 16675952]; DNA repair protein RAD16 1025604 RAD16 30037131 RAD16 Sugiyamaella lignohabitans DNA repair protein RAD16 XP_018736468.1 1023031 D 796027 CDS AWJ20_4946 30037133 complement(1026316..1027365) D 1 NC_031673.1 Sorbitol dehydrogenase; expression is induced in the presence of sorbitol or xylose; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0003939 - L-iditol 2-dehydrogenase activity [Evidence IEA]; GO_function: GO:0003939 - L-iditol 2-dehydrogenase activity [Evidence IDA,ISS] [PMID 8125328]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0019318 - hexose metabolic process [Evidence IEP] [PMID 8125328]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; L-iditol 2-dehydrogenase SOR1 1027365 SOR1 30037133 SOR1 Sugiyamaella lignohabitans L-iditol 2-dehydrogenase SOR1 XP_018736469.1 1026316 R 796027 CDS AWJ20_4947 30037134 1030449..1032098 D 1 NC_031673.1 lysine permease 1032098 LYP1 30037134 LYP1 Sugiyamaella lignohabitans lysine permease XP_018736470.1 1030449 D 796027 CDS AWJ20_4948 30037135 complement(1032380..1035931) D 1 NC_031673.1 Chitin synthase III; catalyzes the transfer of N-acetylglucosamine (GlcNAc) to chitin; required for synthesis of the majority of cell wall chitin, the chitin ring during bud emergence, and spore wall chitosan; contains overlapping di-leucine and di-acidic signals that mediate, respectively, intracellular trafficking by AP-1 and trafficking to plasma membrane by exomer complex; requires AP-3 complex for its intracellular retention; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 15470103]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 8909536]; GO_component: GO:0045009 - chitosome [Evidence IDA] [PMID 8970154]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 9008706]; GO_component: GO:0000131 - incipient cellular bud site [Evidence IDA] [PMID 15470103]; GO_component: GO:0000131 - incipient cellular bud site [Evidence IDA] [PMID 9008706]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 19053807]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005628 - prospore membrane [Evidence IDA] [PMID 15755916]; GO_function: GO:0004100 - chitin synthase activity [Evidence IEA]; GO_function: GO:0004100 - chitin synthase activity [Evidence IMP] [PMID 9760183]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA]; GO_function: GO:0016758 - transferase activity, transferring hexosyl groups [Evidence IEA]; GO_process: GO:0030476 - ascospore wall assembly [Evidence IMP] [PMID 1293886]; GO_process: GO:0034221 - fungal-type cell wall chitin biosynthetic process [Evidence TAS] [PMID 7565410]; chitin synthase CHS3 1035931 CHS3 30037135 CHS3 Sugiyamaella lignohabitans chitin synthase CHS3 XP_018736471.1 1032380 R 796027 CDS AWJ20_4949 30037136 1037460..1038506 D 1 NC_031673.1 Uridine nucleosidase (uridine-cytidine N-ribohydrolase); cleaves N-glycosidic bonds in nucleosides; involved in the pyrimidine salvage and nicotinamide riboside salvage pathways; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016798 - hydrolase activity, acting on glycosyl bonds [Evidence IEA]; GO_function: GO:0016799 - hydrolase activity, hydrolyzing N-glycosyl compounds [Evidence IEA]; GO_function: GO:0070635 - nicotinamide riboside hydrolase activity [Evidence IDA] [PMID 19001417]; GO_function: GO:0070636 - nicotinic acid riboside hydrolase activity [Evidence IDA] [PMID 19001417]; GO_function: GO:0050263 - ribosylpyrimidine nucleosidase activity [Evidence IDA] [PMID 11872485]; GO_function: GO:0050263 - ribosylpyrimidine nucleosidase activity [Evidence IDA] [PMID 12111094]; GO_function: GO:0045437 - uridine nucleosidase activity [Evidence IEA]; GO_function: GO:0045437 - uridine nucleosidase activity [Evidence IDA] [PMID 19001417]; GO_process: GO:0034356 - NAD biosynthesis via nicotinamide riboside salvage pathway [Evidence IGI] [PMID 19001417]; GO_process: GO:0006216 - cytidine catabolic process [Evidence IMP] [PMID 23670538]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0019358 - nicotinate nucleotide salvage [Evidence IGI] [PMID 17482543]; GO_process: GO:0046135 - pyrimidine nucleoside catabolic process [Evidence IDA] [PMID 11872485]; GO_process: GO:0046135 - pyrimidine nucleoside catabolic process [Evidence IDA] [PMID 12111094]; GO_process: GO:0008655 - pyrimidine-containing compound salvage [Evidence IMP] [PMID 11872485]; GO_process: GO:0006218 - uridine catabolic process [Evidence IMP] [PMID 23670538]; trifunctional uridine nucleosidase/nicotinamide riboside hydrolase/nicotinic acid riboside hydrolase 1038506 URH1 30037136 URH1 Sugiyamaella lignohabitans trifunctional uridine nucleosidase/nicotinamide riboside hydrolase/nicotinic acid riboside hydrolase XP_018736472.1 1037460 D 796027 CDS AWJ20_4950 30037138 complement(join(1038815..1043134,1043463..1043527,1043699..1043804)) D 1 NC_031673.1 Subunit of the RNA polymerase II mediator complex; associates with core polymerase subunits to form the RNA polymerase II holoenzyme; affects transcription by acting as target of activators and repressors; forms part of the tail domain of mediator; GO_component: GO:0070847 - core mediator complex [Evidence IDA] [PMID 9891034]; GO_component: GO:0016592 - mediator complex [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0001102 - RNA polymerase II activating transcription factor binding [Evidence IDA] [PMID 20308326]; GO_function: GO:0001128 - RNA polymerase II transcription coactivator activity involved in preinitiation complex assembly [Evidence IDA] [PMID 8378310]; GO_function: GO:0001104 - RNA polymerase II transcription cofactor activity [Evidence IEA]; GO_function: GO:0001135 - RNA polymerase II transcription factor recruiting transcription factor activity [Evidence IMP] [PMID 15254252]; GO_function: GO:0001088 - TFIIE-class binding transcription factor activity [Evidence IDA] [PMID 8790357]; GO_function: GO:0001095 - TFIIE-class transcription factor binding [Evidence IDA] [PMID 8790357]; GO_function: GO:0001097 - TFIIH-class transcription factor binding [Evidence IDA] [PMID 10973956]; GO_process: GO:0051123 - RNA polymerase II transcriptional preinitiation complex assembly [Evidence IDA] [PMID 12482986]; GO_process: GO:0000122 - negative regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 11470794]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IDA] [PMID 8187178]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 9891034]; GO_process: GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence IEA]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Gal11p 1043804 GAL11 30037138 GAL11 Sugiyamaella lignohabitans Gal11p XP_018736473.1 1038815 R 796027 CDS AWJ20_4951 30037139 complement(1048115..1050901) D 1 NC_031673.1 Vacuolar cation channel; mediates release of Ca(2+) from the vacuole in response to hyperosmotic shock; GO_component: GO:0000324 - fungal-type vacuole [Evidence IDA] [PMID 11427713]; GO_component: GO:0000324 - fungal-type vacuole [Evidence IDA] [PMID 11781332]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 20035756]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0005227 - calcium activated cation channel activity [Evidence IDA] [PMID 1700419]; GO_function: GO:0005262 - calcium channel activity [Evidence IEA]; GO_function: GO:0005262 - calcium channel activity [Evidence IDA] [PMID 11781332]; GO_function: GO:0005216 - ion channel activity [Evidence IEA]; GO_function: GO:0005267 - potassium channel activity [Evidence IDA] [PMID 1700419]; GO_function: GO:0005272 - sodium channel activity [Evidence IDA] [PMID 1700419]; GO_function: GO:0005244 - voltage-gated ion channel activity [Evidence IDA] [PMID 1700419]; GO_process: GO:0070588 - calcium ion transmembrane transport [Evidence IEA]; GO_process: GO:0006816 - calcium ion transport [Evidence IEA]; GO_process: GO:0030003 - cellular cation homeostasis [Evidence IDA,IMP] [PMID 11427713]; GO_process: GO:0030003 - cellular cation homeostasis [Evidence IDA,IMP] [PMID 11781332]; GO_process: GO:0006811 - ion transport [Evidence IEA,IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Yvc1p 1050901 YVC1 30037139 YVC1 Sugiyamaella lignohabitans Yvc1p XP_018736474.1 1048115 R 796027 CDS AWJ20_4952 30037140 1052006..1052797 D 1 NC_031673.1 Peroxisomal 2,4-dienoyl-CoA reductase; auxiliary enzyme of fatty acid beta-oxidation; homodimeric enzyme required for growth and sporulation on petroselineate medium; expression induced during late sporulation and in the presence of oleate; GO_component: GO:0005782 - peroxisomal matrix [Evidence IDA] [PMID 9268358]; GO_component: GO:0005777 - peroxisome [Evidence IEA,IEA]; GO_function: GO:0008670 - 2,4-dienoyl-CoA reductase (NADPH) activity [Evidence IEA]; GO_function: GO:0008670 - 2,4-dienoyl-CoA reductase (NADPH) activity [Evidence IDA,ISS] [PMID 9268358]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_process: GO:0030437 - ascospore formation [Evidence IEP,IMP] [PMID 7969036]; GO_process: GO:0009062 - fatty acid catabolic process [Evidence IDA,ISS] [PMID 9268358]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; GO_process: GO:0030435 - sporulation resulting in formation of a cellular spore [Evidence IEA]; Sps19p 1052797 SPS19 30037140 SPS19 Sugiyamaella lignohabitans Sps19p XP_018736475.1 1052006 D 796027 CDS AWJ20_4953 30037141 1055821..1058106 D 1 NC_031673.1 uncharacterized protein 1058106 30037141 AWJ20_4953 Sugiyamaella lignohabitans uncharacterized protein XP_018736476.1 1055821 D 796027 CDS AWJ20_4954 30037142 1058423..1060684 D 1 NC_031673.1 Positive regulator of the Gcn2p kinase activity; forms a complex with Gcn1p; proposed to stimulate Gcn2p activation by an uncharged tRNA; GO_component: GO:0005829 - cytosol [Evidence IPI] [PMID 9234705]; GO_component: GO:0022626 - cytosolic ribosome [Evidence IDA] [PMID 9234705]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016887 - ATPase activity [Evidence IEA]; GO_function: GO:0016887 - ATPase activity [Evidence ISS] [PMID 7621831]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0006448 - regulation of translational elongation [Evidence IMP,IPI] [PMID 9234705]; putative AAA family ATPase GCN20 1060684 GCN20 30037142 GCN20 Sugiyamaella lignohabitans putative AAA family ATPase GCN20 XP_018736477.1 1058423 D 796027 CDS AWJ20_4955 30037143 complement(1060860..1063883) D 1 NC_031673.1 Exosome core complex catalytic subunit; has both endonuclease and 3'-5' exonuclease activity; involved in 3'-5' RNA processing and degradation in both the nucleus and the cytoplasm; role in degradation of tRNAs; has similarity to E. coli RNase R and to human DIS3; mutations in Dis3p corresponding to human mutations implicated in multiple myeloma cause phenotypes suggesting impaired exosome function; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0000177 - cytoplasmic exosome (RNase complex) [Evidence IDA] [PMID 10465791]; GO_component: GO:0000177 - cytoplasmic exosome (RNase complex) [Evidence IDA] [PMID 19046973]; GO_component: GO:0000178 - exosome (RNase complex) [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0000176 - nuclear exosome (RNase complex) [Evidence IDA] [PMID 10465791]; GO_component: GO:0000176 - nuclear exosome (RNase complex) [Evidence IDA] [PMID 19046973]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 22842922]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 9562621]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_function: GO:0000175 - 3'-5'-exoribonuclease activity [Evidence IDA,IMP] [PMID 17173052]; GO_function: GO:0000175 - 3'-5'-exoribonuclease activity [Evidence IDA,IMP] [PMID 17643380]; GO_function: GO:0003723 - RNA binding [Evidence IEA,IEA]; GO_function: GO:0004519 - endonuclease activity [Evidence IEA]; GO_function: GO:0004521 - endoribonuclease activity [Evidence IDA,IMP] [PMID 19060886]; GO_function: GO:0004521 - endoribonuclease activity [Evidence IDA] [PMID 19060898]; GO_function: GO:0004521 - endoribonuclease activity [Evidence IDA,IMP] [PMID 19129231]; GO_function: GO:0004527 - exonuclease activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0004518 - nuclease activity [Evidence IEA]; GO_function: GO:0000049 - tRNA binding [Evidence IDA,IMP] [PMID 17643380]; GO_process: GO:0000467 - exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 10508172]; GO_process: GO:0000467 - exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 9390555]; GO_process: GO:0043628 - ncRNA 3'-end processing [Evidence IMP] [PMID 11352936]; GO_process: GO:0070651 - nonfunctional rRNA decay [Evidence IMP] [PMID 19481524]; GO_process: GO:0071028 - nuclear mRNA surveillance [Evidence IMP] [PMID 11030620]; GO_process: GO:0071039 - nuclear polyadenylation-dependent CUT catabolic process [Evidence IMP] [PMID 15935759]; GO_process: GO:0071042 - nuclear polyadenylation-dependent mRNA catabolic process [Evidence IC] [PMID 10465791]; GO_process: GO:0071035 - nuclear polyadenylation-dependent rRNA catabolic process [Evidence IMP] [PMID 16431988]; GO_process: GO:0071035 - nuclear polyadenylation-dependent rRNA catabolic process [Evidence IMP] [PMID 18940861]; GO_process: GO:0071038 - nuclear polyadenylation-dependent tRNA catabolic process [Evidence IGI] [PMID 15145828]; GO_process: GO:0071038 - nuclear polyadenylation-dependent tRNA catabolic process [Evidence IDA] [PMID 15828860]; GO_process: GO:0071038 - nuclear polyadenylation-dependent tRNA catabolic process [Evidence IDA] [PMID 15935758]; GO_process: GO:0071038 - nuclear polyadenylation-dependent tRNA catabolic process [Evidence IDA,IMP] [PMID 17643380]; GO_process: GO:0070478 - nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay [Evidence IC] [PMID 10465791]; GO_process: GO:0070481 - nuclear-transcribed mRNA catabolic process, non-stop decay [Evidence IC] [PMID 10465791]; GO_process: GO:0071051 - polyadenylation-dependent snoRNA 3'-end processing [Evidence IC] [PMID 10465791]; GO_process: GO:0016075 - rRNA catabolic process [Evidence IMP] [PMID 10508172]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; exosome catalytic subunit DIS3 1063883 DIS3 30037143 DIS3 Sugiyamaella lignohabitans exosome catalytic subunit DIS3 XP_018736478.1 1060860 R 796027 CDS AWJ20_4956 30037144 join(1064005..1064046,1064506..1064511,1064592..1065479) D 1 NC_031673.1 Ski complex component and WD-repeat protein; mediates 3'-5' RNA degradation by the cytoplasmic exosome; also required for meiotic double-strand break recombination; null mutants have superkiller phenotype; GO_component: GO:0055087 - Ski complex [Evidence IDA] [PMID 10744028]; GO_component: GO:0055087 - Ski complex [Evidence IDA,IPI] [PMID 18042677]; GO_component: GO:0005694 - chromosome [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0000228 - nuclear chromosome [Evidence IDA] [PMID 14992724]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0051607 - defense response to virus [Evidence IEA]; GO_process: GO:0007126 - meiotic nuclear division [Evidence IEA]; GO_process: GO:0070478 - nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay [Evidence IGI,IMP] [PMID 12881429]; GO_process: GO:0034427 - nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5' [Evidence IMP] [PMID 9482746]; GO_process: GO:0070481 - nuclear-transcribed mRNA catabolic process, non-stop decay [Evidence IMP] [PMID 11910110]; GO_process: GO:0070481 - nuclear-transcribed mRNA catabolic process, non-stop decay [Evidence IMP] [PMID 17660569]; GO_process: GO:0006461 - protein complex assembly [Evidence IMP] [PMID 14992724]; GO_process: GO:0065004 - protein-DNA complex assembly [Evidence IMP] [PMID 14992724]; GO_process: GO:0007131 - reciprocal meiotic recombination [Evidence IGI,IMP,IPI] [PMID 14992724]; SKI complex subunit WD repeat protein SKI8 1065479 SKI8 30037144 SKI8 Sugiyamaella lignohabitans SKI complex subunit WD repeat protein SKI8 XP_018736479.1 1064005 D 796027 CDS AWJ20_4957 30037145 complement(1066075..1069014) D 1 NC_031673.1 Splicing factor; component of the U4/U6-U5 snRNP complex; GO_component: GO:0046540 - U4/U6 x U5 tri-snRNP complex [Evidence IDA] [PMID 10377396]; GO_component: GO:0046540 - U4/U6 x U5 tri-snRNP complex [Evidence IDA] [PMID 10449419]; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005681 - spliceosomal complex [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006396 - RNA processing [Evidence IEA]; GO_process: GO:0008380 - RNA splicing [Evidence IEA]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0000398 - mRNA splicing, via spliceosome [Evidence IEA]; GO_process: GO:0000398 - mRNA splicing, via spliceosome [Evidence IPI] [PMID 10377396]; Prp6p 1069014 PRP6 30037145 PRP6 Sugiyamaella lignohabitans Prp6p XP_018736480.1 1066075 R 796027 CDS AWJ20_4958 30037146 complement(1069305..1072295) D 1 NC_031673.1 ATP-dependent DNA translocase involved in chromatin remodeling; ATPase component that, with Itc1p, forms a complex required for repression of a-specific genes, INO1, and early meiotic genes during mitotic growth; the Isw2 complex exhibits basal levels of chromatin binding throughout the genome as well as target-specific chromatin interactions; targeted by Ume6p- and Sua7p-dependent DNA looping to many loci genome-wide; GO_component: GO:0008623 - CHRAC [Evidence IPI,ISS] [PMID 14673157]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IPI] [PMID 11238381]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0015616 - DNA translocase activity [Evidence IDA] [PMID 19203228]; GO_function: GO:0003682 - chromatin binding [Evidence IEA]; GO_function: GO:0003682 - chromatin binding [Evidence IDA] [PMID 16227570]; GO_function: GO:0004386 - helicase activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016818 - hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides [Evidence IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0031491 - nucleosome binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0003697 - single-stranded DNA binding [Evidence IDA] [PMID 19203228]; GO_process: GO:0043044 - ATP-dependent chromatin remodeling [Evidence IEA]; GO_process: GO:0016568 - chromatin modification [Evidence IEA]; GO_process: GO:0006338 - chromatin remodeling [Evidence IEA]; GO_process: GO:0006338 - chromatin remodeling [Evidence IMP] [PMID 11238381]; GO_process: GO:0006338 - chromatin remodeling [Evidence IDA,IMP] [PMID 16227570]; GO_process: GO:0000183 - chromatin silencing at rDNA [Evidence IMP] [PMID 17689493]; GO_process: GO:0006348 - chromatin silencing at telomere [Evidence IMP] [PMID 14673157]; GO_process: GO:0006348 - chromatin silencing at telomere [Evidence IMP] [PMID 17689493]; GO_process: GO:0060195 - negative regulation of antisense RNA transcription [Evidence IGI] [PMID 18075583]; GO_process: GO:0046020 - negative regulation of transcription from RNA polymerase II promoter by pheromones [Evidence IMP] [PMID 12624196]; GO_process: GO:0016584 - nucleosome positioning [Evidence IDA] [PMID 15116071]; GO_process: GO:0016584 - nucleosome positioning [Evidence IDA] [PMID 17949749]; GO_process: GO:0034401 - regulation of transcription by chromatin organization [Evidence IMP] [PMID 16227570]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006369 - termination of RNA polymerase II transcription [Evidence IGI] [PMID 12504018]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Isw2p 1072295 ISW2 30037146 ISW2 Sugiyamaella lignohabitans Isw2p XP_018736481.1 1069305 R 796027 CDS AWJ20_4959 30037147 1077739..1079295 D 1 NC_031673.1 Plasma membrane transporter for choline, ethanolamine, and carnitine; involved in the uptake of nitrogen mustard and the uptake of glycine betaine during hypersaline stress; co-regulated with phospholipid biosynthetic genes and negatively regulated by choline and myo-inositol; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence ISS] [PMID 2203793]; GO_function: GO:1901235 - (R)-carnitine transmembrane transporter activity [Evidence IMP] [PMID 23755272]; GO_function: GO:0015171 - amino acid transmembrane transporter activity [Evidence IEA]; GO_function: GO:0015220 - choline transmembrane transporter activity [Evidence IMP] [PMID 2203793]; GO_function: GO:0015220 - choline transmembrane transporter activity [Evidence IGI] [PMID 3514579]; GO_function: GO:0034228 - ethanolamine transmembrane transporter activity [Evidence IGI] [PMID 3514579]; GO_process: GO:1900749 - (R)-carnitine transport [Evidence IMP] [PMID 23755272]; GO_process: GO:0003333 - amino acid transmembrane transport [Evidence IEA]; GO_process: GO:0006865 - amino acid transport [Evidence IEA,IEA]; GO_process: GO:0015871 - choline transport [Evidence IMP] [PMID 2203793]; GO_process: GO:0015871 - choline transport [Evidence IGI] [PMID 3514579]; GO_process: GO:0034229 - ethanolamine transport [Evidence IGI] [PMID 3514579]; GO_process: GO:0031460 - glycine betaine transport [Evidence IMP] [PMID 16487344]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Hnm1p 1079295 HNM1 30037147 HNM1 Sugiyamaella lignohabitans Hnm1p XP_018736482.1 1077739 D 796027 CDS AWJ20_4960 30037149 1083035..1086493 D 1 NC_031673.1 One of two type I myosin motors; contains proline-rich tail homology 2 (TH2) and SH3 domains; MYO5 deletion has little effect on growth, but myo3 myo5 double deletion causes severe defects in growth and actin cytoskeleton organization; MYO5 has a paralog, MYO3, that arose from the whole genome duplication; GO_component: GO:0030479 - actin cortical patch [Evidence IEA]; GO_component: GO:0030479 - actin cortical patch [Evidence IDA] [PMID 16824951]; GO_component: GO:0030479 - actin cortical patch [Evidence IDA] [PMID 20647997]; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 19053807]; GO_component: GO:0016459 - myosin complex [Evidence IEA,IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0003779 - actin binding [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0000146 - microfilament motor activity [Evidence IDA] [PMID 16824951]; GO_function: GO:0003774 - motor activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0051666 - actin cortical patch localization [Evidence IGI,IMP] [PMID 18177206]; GO_process: GO:0007121 - bipolar cellular bud site selection [Evidence TAS] [PMID 10652251]; GO_process: GO:0006897 - endocytosis [Evidence IMP] [PMID 16824951]; GO_process: GO:0006887 - exocytosis [Evidence TAS] [PMID 10652251]; GO_process: GO:0031505 - fungal-type cell wall organization [Evidence TAS] [PMID 10652251]; GO_process: GO:0008152 - metabolic process [Evidence IEA,IEA]; GO_process: GO:0006898 - receptor-mediated endocytosis [Evidence IMP] [PMID 8614799]; GO_process: GO:0006970 - response to osmotic stress [Evidence TAS] [PMID 10652251]; GO_process: GO:0009651 - response to salt stress [Evidence IGI,IPI] [PMID 12391157]; myosin 5 1086493 MYO5 30037149 MYO5 Sugiyamaella lignohabitans myosin 5 XP_018736483.1 1083035 D 796027 CDS AWJ20_4962 30037151 1088422..1090065 D 1 NC_031673.1 putative permease SEO1 1090065 SEO1 30037151 SEO1 Sugiyamaella lignohabitans putative permease SEO1 XP_018736484.1 1088422 D 796027 CDS AWJ20_4963 30037152 1091776..1093512 D 1 NC_031673.1 Essential subunit of the Pan2p-Pan3p poly(A)-ribonuclease complex; complex acts to control poly(A) tail length and regulate the stoichiometry and activity of postreplication repair complexes; GO_component: GO:0031251 - PAN complex [Evidence IDA] [PMID 8816488]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA,IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0004535 - poly(A)-specific ribonuclease activity [Evidence IDA,IMP] [PMID 8816488]; GO_function: GO:0004672 - protein kinase activity [Evidence IEA]; GO_function: GO:0016772 - transferase activity, transferring phosphorus-containing groups [Evidence IEA]; GO_process: GO:0006281 - DNA repair [Evidence IDA] [PMID 11953437]; GO_process: GO:0031124 - mRNA 3'-end processing [Evidence IMP,IPI] [PMID 8816488]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0006301 - postreplication repair [Evidence IGI,IPI] [PMID 11953437]; GO_process: GO:0006468 - protein phosphorylation [Evidence IEA]; Pan3p 1093512 PAN3 30037152 PAN3 Sugiyamaella lignohabitans Pan3p XP_018736485.1 1091776 D 796027 CDS AWJ20_4964 30037153 complement(join(1097279..1097589,1098268..1099405)) D 1 NC_031673.1 Cytochrome b2 (L-lactate cytochrome-c oxidoreductase); component of the mitochondrial intermembrane space, required for lactate utilization; expression is repressed by glucose and anaerobic conditions; GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IEA]; GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IDA] [PMID 3004948]; GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IDA] [PMID 6290489]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 11502169]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0070469 - respiratory chain [Evidence IEA]; GO_function: GO:0010181 - FMN binding [Evidence IEA]; GO_function: GO:0004460 - L-lactate dehydrogenase (cytochrome) activity [Evidence IEA]; GO_function: GO:0004460 - L-lactate dehydrogenase (cytochrome) activity [Evidence IDA] [PMID 3004948]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0020037 - heme binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_process: GO:0006089 - lactate metabolic process [Evidence IMP] [PMID 8492799]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; Cyb2p 1099405 CYB2 30037153 CYB2 Sugiyamaella lignohabitans Cyb2p XP_018736486.1 1097279 R 796027 CDS AWJ20_4965 30037154 1101852..1102523 D 1 NC_031673.1 TFIID subunit (40 kDa); involved in RNA polymerase II transcription initiation, similar to histone H3 with atypical histone fold motif of Spt3-like transcription factors; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005669 - transcription factor TFIID complex [Evidence IDA] [PMID 10788514]; GO_component: GO:0005669 - transcription factor TFIID complex [Evidence IDA] [PMID 15448131]; GO_function: GO:0001075 - RNA polymerase II core promoter sequence-specific DNA binding transcription factor activity involved in preinitiation complex assembly [Evidence IC]; GO_function: GO:0003682 - chromatin binding [Evidence IDA] [PMID 10818000]; GO_function: GO:0046982 - protein heterodimerization activity [Evidence IEA]; GO_process: GO:0051123 - RNA polymerase II transcriptional preinitiation complex assembly [Evidence IMP] [PMID 12840001]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IDA] [PMID 12138208]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IDA] [PMID 15448131]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IMP] [PMID 9083082]; GO_process: GO:0006367 - transcription initiation from RNA polymerase II promoter [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Taf11p 1102523 TAF11 30037154 TAF11 Sugiyamaella lignohabitans Taf11p XP_018736487.1 1101852 D 796027 CDS AWJ20_4966 30037155 complement(1102842..1105616) D 1 NC_031673.1 Phosphatidylinositol phosphate (PtdInsP) phosphatase; involved in hydrolysis of PtdIns[4]P in the early and medial Golgi; regulated by interaction with Vps74p; ER localized transmembrane protein which cycles through the Golgi; involved in protein trafficking and processing, secretion, and cell wall maintenance; regulates sphingolipid biosynthesis through the modulation of PtdIns(4)P metabolism; GO_component: GO:0005797 - Golgi medial cisterna [Evidence IDA] [PMID 22553352]; GO_component: GO:0035339 - SPOTS complex [Evidence IDA] [PMID 20182505]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0030173 - integral component of Golgi membrane [Evidence IDA,IMP] [PMID 15657391]; GO_component: GO:0030173 - integral component of Golgi membrane [Evidence IDA] [PMID 8314848]; GO_component: GO:0030176 - integral component of endoplasmic reticulum membrane [Evidence IDA,IMP] [PMID 11514624]; GO_component: GO:0030176 - integral component of endoplasmic reticulum membrane [Evidence IMP] [PMID 11792713]; GO_component: GO:0030176 - integral component of endoplasmic reticulum membrane [Evidence IDA,IMP] [PMID 15657391]; GO_component: GO:0030176 - integral component of endoplasmic reticulum membrane [Evidence IDA] [PMID 8314848]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IDA] [PMID 16407407]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016791 - phosphatase activity [Evidence IMP] [PMID 22452743]; GO_function: GO:0043813 - phosphatidylinositol-3,5-bisphosphate 5-phosphatase activity [Evidence IDA] [PMID 10625610]; GO_function: GO:0004438 - phosphatidylinositol-3-phosphatase activity [Evidence IDA] [PMID 10625610]; GO_function: GO:0043812 - phosphatidylinositol-4-phosphate phosphatase activity [Evidence IDA] [PMID 10625610]; GO_function: GO:0042578 - phosphoric ester hydrolase activity [Evidence IEA]; GO_process: GO:0046856 - phosphatidylinositol dephosphorylation [Evidence IDA,IGI,IMP] [PMID 10625610]; GO_process: GO:0046856 - phosphatidylinositol dephosphorylation [Evidence IMP] [PMID 22553352]; phosphatidylinositol-3-phosphatase SAC1 1105616 SAC1 30037155 SAC1 Sugiyamaella lignohabitans phosphatidylinositol-3-phosphatase SAC1 XP_018736488.1 1102842 R 796027 CDS AWJ20_4967 30037156 1106562..1108235 D 1 NC_031673.1 Subunit of the cytosolic chaperonin Cct ring complex; related to Tcp1p, required for the assembly of actin and tubulins in vivo; GO_component: GO:0005832 - chaperonin-containing T-complex [Evidence IPI] [PMID 15704212]; GO_component: GO:0005832 - chaperonin-containing T-complex [Evidence IDA] [PMID 16762366]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0051082 - unfolded protein binding [Evidence IEA]; GO_function: GO:0051082 - unfolded protein binding [Evidence IDA] [PMID 16762366]; GO_process: GO:0044267 - cellular protein metabolic process [Evidence IEA]; GO_process: GO:0006457 - protein folding [Evidence IEA]; GO_process: GO:0006457 - protein folding [Evidence IDA] [PMID 16762366]; Cct8p 1108235 CCT8 30037156 CCT8 Sugiyamaella lignohabitans Cct8p XP_018736489.1 1106562 D 796027 CDS AWJ20_4968 30037157 complement(1110950..1112794) D 1 NC_031673.1 Phosphatidylinositol-4-phosphate 5-kinase; involved in actin cytoskeleton organization and cell morphogenesis; multicopy suppressor of stt4 mutation; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9624177]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 9624177]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IEA]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IDA] [PMID 9624177]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IDA] [PMID 9624178]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016307 - phosphatidylinositol phosphate kinase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0031321 - ascospore-type prospore assembly [Evidence IGI] [PMID 19502581]; GO_process: GO:0046488 - phosphatidylinositol metabolic process [Evidence IEA]; GO_process: GO:0046854 - phosphatidylinositol phosphorylation [Evidence IDA] [PMID 9624177]; GO_process: GO:0046854 - phosphatidylinositol phosphorylation [Evidence IDA] [PMID 9624178]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; 1-phosphatidylinositol-4-phosphate 5-kinase 1112794 MSS4 30037157 MSS4 Sugiyamaella lignohabitans 1-phosphatidylinositol-4-phosphate 5-kinase XP_018736490.1 1110950 R 796027 CDS AWJ20_4969 30037158 1116892..1118268 D 1 NC_031673.1 Component of the septin ring that is required for cytokinesis; septins are GTP-binding proteins that assemble into rod-like hetero-oligomers that can associate with other rods to form filaments; septin rings at the mother-bud neck act as scaffolds for recruiting cell division factors and as barriers to prevent diffusion of specific proteins between mother and daughter cells; GO_component: GO:0005619 - ascospore wall [Evidence IDA] [PMID 8636217]; GO_component: GO:0005935 - cellular bud neck [Evidence IEA]; GO_component: GO:0000144 - cellular bud neck septin ring [Evidence IDA] [PMID 1934633]; GO_component: GO:0005881 - cytoplasmic microtubule [Evidence IDA] [PMID 18826657]; GO_component: GO:0001400 - mating projection base [Evidence IDA] [PMID 8791410]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 19053807]; GO_component: GO:0072687 - meiotic spindle [Evidence IDA] [PMID 18826657]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005628 - prospore membrane [Evidence IDA] [PMID 18826657]; GO_component: GO:0005628 - prospore membrane [Evidence IDA] [PMID 24390141]; GO_component: GO:0031105 - septin complex [Evidence IEA]; GO_component: GO:0031105 - septin complex [Evidence IDA] [PMID 18550837]; GO_component: GO:0031105 - septin complex [Evidence IPI] [PMID 9813094]; GO_component: GO:0032160 - septin filament array [Evidence IDA] [PMID 15282341]; GO_component: GO:0005876 - spindle microtubule [Evidence IDA] [PMID 18826657]; GO_function: GO:0005545 - 1-phosphatidylinositol binding [Evidence IDA] [PMID 12665577]; GO_function: GO:0005525 - GTP binding [Evidence IEA,IEA]; GO_function: GO:0005525 - GTP binding [Evidence IDA] [PMID 12665577]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0005198 - structural molecule activity [Evidence IDA] [PMID 18550837]; GO_process: GO:0007049 - cell cycle [Evidence IEA,IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0030011 - maintenance of cell polarity [Evidence IC] [PMID 10882120]; GO_process: GO:0000281 - mitotic cytokinesis [Evidence IMP] [PMID 4950437]; GO_process: GO:0045860 - positive regulation of protein kinase activity [Evidence IDA] [PMID 14527412]; septin CDC11 1118268 CDC11 30037158 CDC11 Sugiyamaella lignohabitans septin CDC11 XP_018736491.1 1116892 D 796027 CDS AWJ20_4970 30037160 complement(1118508..1122203) D 1 NC_031673.1 serine/threonine protein kinase SAT4 1122203 SAT4 30037160 SAT4 Sugiyamaella lignohabitans serine/threonine protein kinase SAT4 XP_018736492.1 1118508 R 796027 CDS AWJ20_4971 30037161 1128650..1131523 D 1 NC_031673.1 Subunit of the mitochondrial alpha-ketoglutarate dehydrogenase complex; catalyzes a key step in the tricarboxylic acid (TCA) cycle, the oxidative decarboxylation of alpha-ketoglutarate to form succinyl-CoA; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA]; GO_component: GO:0042645 - mitochondrial nucleoid [Evidence IEA,IEA]; GO_component: GO:0042645 - mitochondrial nucleoid [Evidence IDA] [PMID 11926067]; GO_component: GO:0042645 - mitochondrial nucleoid [Evidence IDA] [PMID 15692048]; GO_component: GO:0009353 - mitochondrial oxoglutarate dehydrogenase complex [Evidence IDA] [PMID 2072900]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0016624 - oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor [Evidence IEA]; GO_function: GO:0004591 - oxoglutarate dehydrogenase (succinyl-transferring) activity [Evidence IEA,IEA]; GO_function: GO:0004591 - oxoglutarate dehydrogenase (succinyl-transferring) activity [Evidence TAS] [PMID 9175438]; GO_function: GO:0030976 - thiamine pyrophosphate binding [Evidence IEA]; GO_process: GO:0006103 - 2-oxoglutarate metabolic process [Evidence TAS] [PMID 9175438]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0006099 - tricarboxylic acid cycle [Evidence IEA,IEA]; GO_process: GO:0006099 - tricarboxylic acid cycle [Evidence TAS] [PMID 9175438]; alpha-ketoglutarate dehydrogenase KGD1 1131523 KGD1 30037161 KGD1 Sugiyamaella lignohabitans alpha-ketoglutarate dehydrogenase KGD1 XP_018736493.1 1128650 D 796027 CDS AWJ20_4972 30037162 complement(1130657..1131256) D 1 NC_031673.1 uncharacterized protein 1131256 30037162 AWJ20_4972 Sugiyamaella lignohabitans uncharacterized protein XP_018736494.1 1130657 R 796027 CDS AWJ20_4973 30037163 complement(1132153..1134036) D 1 NC_031673.1 Double-strand-break repair protein rad21-like protein 1 1134036 30037163 AWJ20_4973 Sugiyamaella lignohabitans Double-strand-break repair protein rad21-like protein 1 XP_018736495.1 1132153 R 796027 CDS AWJ20_4975 30037165 1136414..1137226 D 1 NC_031673.1 Component of yeast cortical actin cytoskeleton; binds and cross links actin filaments; originally identified by its homology to calponin (contains a calponin-like repeat) but the Scp1p domain structure is more similar to transgelin; GO_component: GO:0030479 - actin cortical patch [Evidence IEA]; GO_component: GO:0030479 - actin cortical patch [Evidence IDA] [PMID 12857851]; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA]; GO_function: GO:0051015 - actin filament binding [Evidence IDA] [PMID 12857851]; GO_function: GO:0030674 - protein binding, bridging [Evidence IDA] [PMID 12857851]; GO_process: GO:0007015 - actin filament organization [Evidence IDA] [PMID 12857851]; GO_process: GO:0001300 - chronological cell aging [Evidence IGI,IMP] [PMID 15024029]; Scp1p 1137226 SCP1 30037165 SCP1 Sugiyamaella lignohabitans Scp1p XP_018736496.1 1136414 D 796027 CDS AWJ20_4976 30037166 1137605..1138135 D 1 NC_031673.1 uncharacterized protein 1138135 30037166 AWJ20_4976 Sugiyamaella lignohabitans uncharacterized protein XP_018736497.1 1137605 D 796027 CDS AWJ20_4977 30037167 complement(1138305..1141826) D 1 NC_031673.1 Mitochondrial DNA polymerase gamma subunit; conserved C-terminal segment is required for the maintenance of mitochondrial genome; its human ortholog, POLG, can rescue mip1 phenotypes, and mutations in POLG are associated with Alpers-Huttenlocher syndrome (AHS) and other mitochondrial diseases; Mip1p is the single subunit of mitochondrial DNA polymerase in yeast, in contrast to metazoans in which there is a complex of a catalytic subunit and an accessory subunit; GO_component: GO:0005760 - gamma DNA polymerase complex [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 10567545]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0008408 - 3'-5' exonuclease activity [Evidence IDA] [PMID 20601675]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA,IEA,IEA]; GO_function: GO:0003887 - DNA-directed DNA polymerase activity [Evidence IDA] [PMID 20601675]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0016779 - nucleotidyltransferase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006260 - DNA replication [Evidence IEA,IEA]; GO_process: GO:0006261 - DNA-dependent DNA replication [Evidence IEA]; GO_process: GO:0006264 - mitochondrial DNA replication [Evidence IDA] [PMID 12023279]; GO_process: GO:0006264 - mitochondrial DNA replication [Evidence IMP] [PMID 2684980]; DNA-directed DNA polymerase gamma MIP1 1141826 MIP1 30037167 MIP1 Sugiyamaella lignohabitans DNA-directed DNA polymerase gamma MIP1 XP_018736498.1 1138305 R 796027 CDS AWJ20_4978 30037168 1142699..1143340 D 1 NC_031673.1 uncharacterized protein 1143340 30037168 AWJ20_4978 Sugiyamaella lignohabitans uncharacterized protein XP_018736499.1 1142699 D 796027 CDS AWJ20_4979 30037169 complement(1143662..1144726) D 1 NC_031673.1 hypothetical protein required for oxidative damage resistance; required for normal levels of resistance to oxidative damage; null mutants are sensitive to hydrogen peroxide; member of a conserved family of proteins found in eukaryotes; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 15060142]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0034599 - cellular response to oxidative stress [Evidence IMP] [PMID 11114193]; Oxr1p 1144726 OXR1 30037169 OXR1 Sugiyamaella lignohabitans Oxr1p XP_018736500.1 1143662 R 796027 CDS AWJ20_4980 30037171 complement(1145796..1146866) D 1 NC_031673.1 Proline permease; required for high-affinity transport of proline; also transports the toxic proline analog azetidine-2-carboxylate (AzC); PUT4 transcription is repressed in ammonia-grown cells; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence ISS] [PMID 10654085]; GO_function: GO:0015193 - L-proline transmembrane transporter activity [Evidence IGI] [PMID 14968425]; GO_function: GO:0015193 - L-proline transmembrane transporter activity [Evidence IMP] [PMID 3552672]; GO_function: GO:0015171 - amino acid transmembrane transporter activity [Evidence IEA]; GO_function: GO:0015175 - neutral amino acid transmembrane transporter activity [Evidence IDA] [PMID 10654085]; GO_process: GO:0003333 - amino acid transmembrane transport [Evidence IEA]; GO_process: GO:0006865 - amino acid transport [Evidence IEA,IEA]; GO_process: GO:0015812 - gamma-aminobutyric acid transport [Evidence IDA,IGI] [PMID 8455553]; GO_process: GO:0015804 - neutral amino acid transport [Evidence IDA] [PMID 10654085]; GO_process: GO:0015824 - proline transport [Evidence IDA] [PMID 10654085]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; proline permease PUT4 1146866 PUT4 30037171 PUT4 Sugiyamaella lignohabitans proline permease PUT4 XP_018736501.1 1145796 R 796027 CDS AWJ20_4981 30037172 complement(1147052..1147507) D 1 NC_031673.1 Proline permease; required for high-affinity transport of proline; also transports the toxic proline analog azetidine-2-carboxylate (AzC); PUT4 transcription is repressed in ammonia-grown cells; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence ISS] [PMID 10654085]; GO_function: GO:0015193 - L-proline transmembrane transporter activity [Evidence IGI] [PMID 14968425]; GO_function: GO:0015193 - L-proline transmembrane transporter activity [Evidence IMP] [PMID 3552672]; GO_function: GO:0015171 - amino acid transmembrane transporter activity [Evidence IEA]; GO_function: GO:0015175 - neutral amino acid transmembrane transporter activity [Evidence IDA] [PMID 10654085]; GO_process: GO:0003333 - amino acid transmembrane transport [Evidence IEA]; GO_process: GO:0006865 - amino acid transport [Evidence IEA,IEA]; GO_process: GO:0015812 - gamma-aminobutyric acid transport [Evidence IDA,IGI] [PMID 8455553]; GO_process: GO:0015804 - neutral amino acid transport [Evidence IDA] [PMID 10654085]; GO_process: GO:0015824 - proline transport [Evidence IDA] [PMID 10654085]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; proline permease PUT4 1147507 PUT4 30037172 PUT4 Sugiyamaella lignohabitans proline permease PUT4 XP_018736502.1 1147052 R 796027 CDS AWJ20_4982 30037173 complement(1150661..1151479) D 1 NC_031673.1 MIND complex subunit MTW1 1151479 MTW1 30037173 MTW1 Sugiyamaella lignohabitans MIND complex subunit MTW1 XP_018736503.1 1150661 R 796027 CDS AWJ20_4983 30037174 complement(1153279..1154337) D 1 NC_031673.1 RNA polymerase I subunit A43; GO_component: GO:0005736 - DNA-directed RNA polymerase I complex [Evidence IDA] [PMID 11486042]; GO_component: GO:0005736 - DNA-directed RNA polymerase I complex [Evidence IDA] [PMID 9837969]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_function: GO:0003899 - DNA-directed RNA polymerase activity [Evidence IEA,IEA]; GO_function: GO:0001054 - RNA polymerase I activity [Evidence IDA] [PMID 9837969]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; GO_process: GO:0006360 - transcription from RNA polymerase I promoter [Evidence IDA] [PMID 9837969]; GO_process: GO:0042790 - transcription of nuclear large rRNA transcript from RNA polymerase I promoter [Evidence IGI] [PMID 7592632]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; DNA-directed RNA polymerase I subunit RPA43 1154337 RPA43 30037174 RPA43 Sugiyamaella lignohabitans DNA-directed RNA polymerase I subunit RPA43 XP_018736504.1 1153279 R 796027 CDS AWJ20_4984 30037175 complement(1154727..1155836) D 1 NC_031673.1 Checkpoint protein; involved in the activation of the DNA damage and meiotic pachytene checkpoints; with Mec3p and Ddc1p, forms a clamp that is loaded onto partial duplex DNA; homolog of human and S. pombe Rad1 and U. maydis Rec1 proteins; GO_component: GO:0030896 - checkpoint clamp complex [Evidence IEA]; GO_component: GO:0030896 - checkpoint clamp complex [Evidence IDA] [PMID 12604797]; GO_component: GO:0030896 - checkpoint clamp complex [Evidence IDA] [PMID 9891048]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IPI] [PMID 11356855]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0003684 - damaged DNA binding [Evidence IEA]; GO_function: GO:0003690 - double-stranded DNA binding [Evidence IEA]; GO_function: GO:0003690 - double-stranded DNA binding [Evidence IDA] [PMID 12604797]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0004518 - nuclease activity [Evidence IEA]; GO_process: GO:0000077 - DNA damage checkpoint [Evidence IEA]; GO_process: GO:0000077 - DNA damage checkpoint [Evidence IMP] [PMID 9564050]; GO_process: GO:0006281 - DNA repair [Evidence IEA,IEA]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0006302 - double-strand break repair [Evidence IEA]; GO_process: GO:0006302 - double-strand break repair [Evidence IMP] [PMID 17624540]; GO_process: GO:0090305 - nucleic acid phosphodiester bond hydrolysis [Evidence IEA]; GO_process: GO:0007131 - reciprocal meiotic recombination [Evidence IEA]; GO_process: GO:0007131 - reciprocal meiotic recombination [Evidence IMP] [PMID 10511543]; Rad17p 1155836 RAD17 30037175 RAD17 Sugiyamaella lignohabitans Rad17p XP_018736505.1 1154727 R 796027 CDS AWJ20_4985 30037176 1157332..1159215 D 1 NC_031673.1 Protein required for cvt-vesicle/autophagosome fusion with the vacuole; associates, as a complex with Ccz1p, with a perivacuolar compartment; potential Cdc28p substrate; GO_component: GO:0035658 - Mon1-Ccz1 complex [Evidence IPI] [PMID 20797862]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 12387888]; GO_component: GO:0005768 - endosome [Evidence IEA]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 12364329]; GO_component: GO:0031902 - late endosome membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0032585 - multivesicular body membrane [Evidence IEA]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006914 - autophagy [Evidence IEA]; GO_process: GO:0006914 - autophagy [Evidence IMP] [PMID 12387888]; GO_process: GO:0006623 - protein targeting to vacuole [Evidence IMP] [PMID 12134085]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0048278 - vesicle docking [Evidence IMP] [PMID 14662743]; Mon1p 1159215 MON1 30037176 MON1 Sugiyamaella lignohabitans Mon1p XP_018736506.1 1157332 D 796027 CDS AWJ20_4986 30037177 1160635..1161999 D 1 NC_031673.1 ATP-dependent DNA helicase, also known as reptin; member of the AAA+ and RuvB protein families, similar to Rvb1p; conserved component of multiple complexes including the INO80 complex, the Swr1 complex, and the R2TP complex (Rvb1-Rvb2-Tah1-Pih1); involved in multiple processes such as chromatin remodeling, box C/D snoRNP assembly, and RNA polymerase II assembly; GO_component: GO:0070209 - ASTRA complex [Evidence IDA] [PMID 19040720]; GO_component: GO:0031011 - Ino80 complex [Evidence IPI] [PMID 10952318]; GO_component: GO:0031011 - Ino80 complex [Evidence IPI] [PMID 24034245]; GO_component: GO:0097255 - R2TP complex [Evidence IDA] [PMID 15766533]; GO_component: GO:0097255 - R2TP complex [Evidence IPI] [PMID 18268103]; GO_component: GO:0000812 - Swr1 complex [Evidence IPI] [PMID 14645854]; GO_component: GO:0000812 - Swr1 complex [Evidence IPI] [PMID 14690608]; GO_component: GO:0000812 - Swr1 complex [Evidence IDA] [PMID 16299513]; GO_component: GO:0005724 - nuclear telomeric heterochromatin [Evidence IDA] [PMID 22100294]; GO_component: GO:0005654 - nucleoplasm [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11604509]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0043140 - ATP-dependent 3'-5' DNA helicase activity [Evidence IDA] [PMID 10952318]; GO_function: GO:0043140 - ATP-dependent 3'-5' DNA helicase activity [Evidence IDA] [PMID 20553504]; GO_function: GO:0043141 - ATP-dependent 5'-3' DNA helicase activity [Evidence IEA]; GO_function: GO:0043141 - ATP-dependent 5'-3' DNA helicase activity [Evidence IDA] [PMID 18234224]; GO_function: GO:0003678 - DNA helicase activity [Evidence IEA]; GO_function: GO:0004386 - helicase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_process: GO:0032508 - DNA duplex unwinding [Evidence IEA]; GO_process: GO:0006281 - DNA repair [Evidence IEA]; GO_process: GO:0000492 - box C/D snoRNP assembly [Evidence IMP] [PMID 11604509]; GO_process: GO:0000492 - box C/D snoRNP assembly [Evidence IMP] [PMID 18268103]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0016568 - chromatin modification [Evidence IEA]; GO_process: GO:0006338 - chromatin remodeling [Evidence IPI] [PMID 14690608]; GO_process: GO:0043486 - histone exchange [Evidence IPI] [PMID 14645854]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0006364 - rRNA processing [Evidence IMP] [PMID 11604509]; GO_process: GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 11278922]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; RuvB family ATP-dependent DNA helicase reptin 1161999 RVB2 30037177 RVB2 Sugiyamaella lignohabitans RuvB family ATP-dependent DNA helicase reptin XP_018736507.1 1160635 D 796027 CDS AWJ20_4987 30037178 complement(1163439..1166153) D 1 NC_031673.1 uncharacterized protein 1166153 30037178 AWJ20_4987 Sugiyamaella lignohabitans uncharacterized protein XP_018736508.1 1163439 R 796027 CDS AWJ20_4988 30037179 complement(1166461..1167495) D 1 NC_031673.1 uncharacterized protein 1167495 30037179 AWJ20_4988 Sugiyamaella lignohabitans uncharacterized protein XP_018736509.1 1166461 R 796027 CDS AWJ20_4989 30037180 1172739..1173266 D 1 NC_031673.1 Possible rhomboid protease; has similarity to eukaryotic rhomboid proteases including Pcp1p; GO_component: GO:0030137 - COPI-coated vesicle [Evidence IDA] [PMID 14562095]; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA,IEA]; GO_component: GO:0005794 - Golgi apparatus [Evidence IDA] [PMID 14562095]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_function: GO:0004252 - serine-type endopeptidase activity [Evidence IEA]; GO_function: GO:0008236 - serine-type peptidase activity [Evidence IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0006508 - proteolysis [Evidence IEA]; Rbd2p 1173266 RBD2 30037180 RBD2 Sugiyamaella lignohabitans Rbd2p XP_018736510.1 1172739 D 796027 CDS AWJ20_4990 30037182 1176584..1177312 D 1 NC_031673.1 Mitochondrial ribosomal protein of the small subunit; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0005763 - mitochondrial small ribosomal subunit [Evidence IPI] [PMID 12392552]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 24390141]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA,IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0019843 - rRNA binding [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IPI] [PMID 12392552]; GO_process: GO:0032543 - mitochondrial translation [Evidence IC] [PMID 12392552]; GO_process: GO:0030435 - sporulation resulting in formation of a cellular spore [Evidence IEA]; GO_process: GO:0006412 - translation [Evidence IEA]; mitochondrial 37S ribosomal protein MRPS17 1177312 MRPS17 30037182 MRPS17 Sugiyamaella lignohabitans mitochondrial 37S ribosomal protein MRPS17 XP_018736511.1 1176584 D 796027 CDS AWJ20_4991 30037183 complement(1179577..1181421) D 1 NC_031673.1 Phosphatidylinositol-4-phosphate 5-kinase; involved in actin cytoskeleton organization and cell morphogenesis; multicopy suppressor of stt4 mutation; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9624177]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 9624177]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IEA]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IDA] [PMID 9624177]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IDA] [PMID 9624178]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016307 - phosphatidylinositol phosphate kinase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0031321 - ascospore-type prospore assembly [Evidence IGI] [PMID 19502581]; GO_process: GO:0046488 - phosphatidylinositol metabolic process [Evidence IEA]; GO_process: GO:0046854 - phosphatidylinositol phosphorylation [Evidence IDA] [PMID 9624177]; GO_process: GO:0046854 - phosphatidylinositol phosphorylation [Evidence IDA] [PMID 9624178]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; 1-phosphatidylinositol-4-phosphate 5-kinase 1181421 MSS4 30037183 MSS4 Sugiyamaella lignohabitans 1-phosphatidylinositol-4-phosphate 5-kinase XP_018736512.1 1179577 R 796027 CDS AWJ20_4992 30037184 1183139..1185460 D 1 NC_031673.1 Protein required for normal actin organization and endocytosis; targeting subunit for protein phosphatase type 1; undergoes Crm1p-dependent nuclear-cytoplasmic shuttling; multicopy suppressor of clathrin deficiency; GO_component: GO:0030479 - actin cortical patch [Evidence IDA] [PMID 12181333]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IMP] [PMID 16251346]; GO_function: GO:0008157 - protein phosphatase 1 binding [Evidence IDA] [PMID 12356757]; GO_function: GO:0008157 - protein phosphatase 1 binding [Evidence IPI] [PMID 8754819]; GO_process: GO:0007015 - actin filament organization [Evidence IMP] [PMID 12356757]; GO_process: GO:0030866 - cortical actin cytoskeleton organization [Evidence IMP] [PMID 12181333]; GO_process: GO:0006897 - endocytosis [Evidence IMP] [PMID 16251346]; GO_process: GO:0009306 - protein secretion [Evidence IGI,IMP] [PMID 8688556]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Scd5p 1185460 SCD5 30037184 SCD5 Sugiyamaella lignohabitans Scd5p XP_018736513.1 1183139 D 796027 CDS AWJ20_4993 30037185 1185846..1187318 D 1 NC_031673.1 Muscle M-line assembly protein unc-89 1187318 MIF2 30037185 MIF2 Sugiyamaella lignohabitans Muscle M-line assembly protein unc-89 XP_018736514.1 1185846 D 796027 CDS AWJ20_4994 30037186 1187862..1189106 D 1 NC_031673.1 Acetyl-CoA C-acetyltransferase (acetoacetyl-CoA thiolase); cytosolic enzyme that transfers an acetyl group from one acetyl-CoA molecule to another, forming acetoacetyl-CoA; involved in the first step in mevalonate biosynthesis; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 5571830]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003985 - acetyl-CoA C-acetyltransferase activity [Evidence IEA]; GO_function: GO:0003985 - acetyl-CoA C-acetyltransferase activity [Evidence IDA] [PMID 7989303]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016746 - transferase activity, transferring acyl groups [Evidence IEA]; GO_function: GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups [Evidence IEA]; GO_process: GO:0006696 - ergosterol biosynthetic process [Evidence IMP] [PMID 200835]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; acetyl-CoA C-acetyltransferase 1189106 ERG10 30037186 ERG10 Sugiyamaella lignohabitans acetyl-CoA C-acetyltransferase XP_018736515.1 1187862 D 796027 CDS AWJ20_4995 30037187 1189309..1189893 D 1 NC_031673.1 uncharacterized protein 1189893 30037187 AWJ20_4995 Sugiyamaella lignohabitans uncharacterized protein XP_018736516.1 1189309 D 796027 CDS AWJ20_4996 30037188 complement(1190096..1193077) D 1 NC_031673.1 Protein required for Stt4-containing PI kinase complex localization; required for Stt4-containing phosphoinositide (PI) kinase patch assembly at the plasma membrane; recruited to the plasma membrane via a conserved basic patch near its N-terminus; exhibits synthetic lethal genetic interactions with PHO85; has sequence similarity to the Drosophila rolling blackout (RBO) gene; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 19075114]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0090002 - establishment of protein localization to plasma membrane [Evidence IMP] [PMID 19075114]; Efr3p 1193077 EFR3 30037188 EFR3 Sugiyamaella lignohabitans Efr3p XP_018736517.1 1190096 R 796027 CDS AWJ20_4997 30037189 complement(1194755..1196146) D 1 NC_031673.1 uncharacterized protein 1196146 30037189 AWJ20_4997 Sugiyamaella lignohabitans uncharacterized protein XP_018736518.1 1194755 R 796027 CDS AWJ20_4998 30037190 1197435..1199897 D 1 NC_031673.1 Regulator of filamentous growth; interacts with FLO11 promoter and regulates FLO11 expression; binds to transcription factors Flo8p and Mss11p; green fluorescent protein (GFP)-fusion protein localizes to the nucleus; YDL233W is not an essential gene; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; Mfg1p 1199897 MFG1 30037190 MFG1 Sugiyamaella lignohabitans Mfg1p XP_018736519.1 1197435 D 796027 CDS AWJ20_4999 30037191 1201849..1203513 D 1 NC_031673.1 Nucleolar protein; forms a complex with Nop14p that mediates maturation and nuclear export of 40S ribosomal subunits; relocalizes to the cytosol in response to hypoxia; GO_component: GO:0030686 - 90S preribosome [Evidence IDA] [PMID 12150911]; GO_component: GO:0030692 - Noc4p-Nop14p complex [Evidence IPI] [PMID 12446671]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 22932476]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 12150911]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 12446671]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 15590835]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 10684247]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22932476]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0032040 - small-subunit processome [Evidence IDA] [PMID 15590835]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0000480 - endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 15590835]; GO_process: GO:0000447 - endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 15590835]; GO_process: GO:0000472 - endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 15590835]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0006364 - rRNA processing [Evidence IMP] [PMID 12446671]; GO_process: GO:0042274 - ribosomal small subunit biogenesis [Evidence IMP] [PMID 12446671]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA,IEA]; Noc4p 1203513 NOC4 30037191 NOC4 Sugiyamaella lignohabitans Noc4p XP_018736520.1 1201849 D 796027 CDS AWJ20_5000 30037195 complement(1203669..1204712) D 1 NC_031673.1 Mitochondrial membrane transporter; mediates uptake of the essential cofactor thiamine pyrophosphate (ThPP) into mitochondria; expression appears to be regulated by carbon source; member of the mitochondrial carrier family; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0031305 - integral component of mitochondrial inner membrane [Evidence IDA] [PMID 12411483]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_function: GO:0015234 - thiamine transmembrane transporter activity [Evidence IDA] [PMID 12411483]; GO_process: GO:0030974 - thiamine pyrophosphate transport [Evidence IDA,IMP] [PMID 12411483]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Tpc1p 1204712 TPC1 30037195 TPC1 Sugiyamaella lignohabitans Tpc1p XP_018736521.1 1203669 R 796027 CDS AWJ20_5001 30037196 1205530..1208049 D 1 NC_031673.1 Glycosylated integral ER membrane hypothetical protein; forms an ER-membrane associated protein complex with Emp65p; member of the SUN-like family of proteins; genetic interactions suggest a role in folding of ER membrane proteins; required for nuclear envelope localization of Mps3p; GO_component: GO:0030176 - integral component of endoplasmic reticulum membrane [Evidence IDA,ISM] [PMID 23275891]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0034975 - protein folding in endoplasmic reticulum [Evidence IGI] [PMID 19325107]; Slp1p 1208049 SLP1 30037196 SLP1 Sugiyamaella lignohabitans Slp1p XP_018736522.1 1205530 D 796027 CDS AWJ20_5002 30037197 complement(1208183..1211647) D 1 NC_031673.1 P-type ATPase, ion transporter of the ER membrane; required to maintain normal lipid composition of intracellular compartments and proper targeting of mitochondrial outer membrane tail-anchored proteins; involved in ER function and Ca2+ homeostasis; required for regulating Hmg2p degradation; confers sensitivity to a killer toxin (SMKT) produced by Pichia farinosa KK1; GO_component: GO:0005801 - cis-Golgi network [Evidence IDA] [PMID 11791712]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IDA] [PMID 12058017]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IDA] [PMID 22745129]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0016887 - ATPase activity [Evidence IEA]; GO_function: GO:0015662 - ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism [Evidence IDA] [PMID 12058017]; GO_function: GO:0015662 - ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism [Evidence IDA] [PMID 22745129]; GO_function: GO:0019829 - cation-transporting ATPase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA,IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0006812 - cation transport [Evidence IEA]; GO_process: GO:0006874 - cellular calcium ion homeostasis [Evidence IMP] [PMID 12058017]; GO_process: GO:0030026 - cellular manganese ion homeostasis [Evidence IMP] [PMID 24392018]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0055092 - sterol homeostasis [Evidence IMP] [PMID 22918956]; GO_process: GO:0055085 - transmembrane transport [Evidence IMP] [PMID 12058017]; ion-transporting P-type ATPase SPF1 1211647 SPF1 30037197 SPF1 Sugiyamaella lignohabitans ion-transporting P-type ATPase SPF1 XP_018736523.1 1208183 R 796027 CDS AWJ20_5003 30037198 1212590..1213033 D 1 NC_031673.1 uncharacterized protein 1213033 30037198 AWJ20_5003 Sugiyamaella lignohabitans uncharacterized protein XP_018736524.1 1212590 D 796027 CDS AWJ20_5004 30037199 1214219..1214854 D 1 NC_031673.1 Subunit of both RNase MRP and nuclear RNase P; forms a soluble heterodimer with Pop6p that binds P3 domain of RNase MRP and RNase P RNAs; RNase MRP cleaves pre-rRNA, while nuclear RNase P cleaves tRNA precursors to generate mature 5' ends and facilitates turnover of nuclear RNAs; GO_component: GO:0005655 - nucleolar ribonuclease P complex [Evidence IDA] [PMID 9618478]; GO_component: GO:0005655 - nucleolar ribonuclease P complex [Evidence IDA] [PMID 9620854]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0000172 - ribonuclease MRP complex [Evidence IPI] [PMID 17881380]; GO_component: GO:0000172 - ribonuclease MRP complex [Evidence IMP] [PMID 9618478]; GO_component: GO:0000172 - ribonuclease MRP complex [Evidence IDA] [PMID 9620854]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0000171 - ribonuclease MRP activity [Evidence IDA,IMP] [PMID 9620854]; GO_function: GO:0004526 - ribonuclease P activity [Evidence IEA]; GO_function: GO:0004526 - ribonuclease P activity [Evidence IDA,IMP] [PMID 9620854]; GO_process: GO:0090501 - RNA phosphodiester bond hydrolysis [Evidence IEA]; GO_process: GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic [Evidence IEA]; GO_process: GO:0034965 - intronic box C/D snoRNA processing [Evidence IDA] [PMID 18713869]; GO_process: GO:0006379 - mRNA cleavage [Evidence IDA] [PMID 14729943]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0006364 - rRNA processing [Evidence IMP] [PMID 9618478]; GO_process: GO:0006364 - rRNA processing [Evidence IMP] [PMID 9620854]; GO_process: GO:0008033 - tRNA processing [Evidence IEA]; GO_process: GO:0008033 - tRNA processing [Evidence IMP] [PMID 9618478]; GO_process: GO:0008033 - tRNA processing [Evidence IMP] [PMID 9620854]; Pop7p 1214854 POP7 30037199 POP7 Sugiyamaella lignohabitans Pop7p XP_018736525.1 1214219 D 796027 CDS AWJ20_5005 30037200 1217159..1219153 D 1 NC_031673.1 XP_962611|transcriptional activator xlnR [Neurospora crassa OR74A]; transcriptional activator xlnR 1219153 30037200 AWJ20_5005 Sugiyamaella lignohabitans transcriptional activator xlnR XP_018736526.1 1217159 D 796027 CDS AWJ20_5006 30037201 1219535..1220914 D 1 NC_031673.1 uncharacterized protein 1220914 30037201 AWJ20_5006 Sugiyamaella lignohabitans uncharacterized protein XP_018736527.1 1219535 D 796027 CDS AWJ20_5007 30037202 1220963..1223227 D 1 NC_031673.1 uncharacterized protein 1223227 30037202 AWJ20_5007 Sugiyamaella lignohabitans uncharacterized protein XP_018736528.1 1220963 D 796027 CDS AWJ20_5008 30037203 complement(1223272..1224567) D 1 NC_031673.1 uncharacterized protein 1224567 30037203 AWJ20_5008 Sugiyamaella lignohabitans uncharacterized protein XP_018736529.1 1223272 R 796027 CDS AWJ20_5009 30037204 complement(1226117..1227433) D 1 NC_031673.1 histone deacetylase RPD3 1227433 RPD3 30037204 RPD3 Sugiyamaella lignohabitans histone deacetylase RPD3 XP_018736530.1 1226117 R 796027 CDS AWJ20_5010 30037206 1228442..1228822 D 1 NC_031673.1 uncharacterized protein 1228822 30037206 AWJ20_5010 Sugiyamaella lignohabitans uncharacterized protein XP_018736531.1 1228442 D 796027 CDS AWJ20_5011 30037207 complement(1229137..1229757) D 1 NC_031673.1 Rab family GTPase; essential for vesicle-mediated exocytic secretion and autophagy; associates with the exocyst component Sec15p and may regulate polarized delivery of transport vesicles to the exocyst at the plasma membrane; GO_component: GO:0030478 - actin cap [Evidence TAS] [PMID 10652251]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0031410 - cytoplasmic vesicle [Evidence IEA]; GO_component: GO:0000131 - incipient cellular bud site [Evidence IDA] [PMID 9128251]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IDA] [PMID 16407407]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 16622836]; GO_component: GO:0030133 - transport vesicle [Evidence TAS] [PMID 12665530]; GO_component: GO:0030133 - transport vesicle [Evidence IDA] [PMID 23079598]; GO_component: GO:0030658 - transport vesicle membrane [Evidence IEA]; GO_component: GO:0031982 - vesicle [Evidence IDA] [PMID 12456647]; GO_function: GO:0005525 - GTP binding [Evidence IEA,IEA]; GO_function: GO:0005525 - GTP binding [Evidence IDA] [PMID 2111819]; GO_function: GO:0003924 - GTPase activity [Evidence IDA] [PMID 2111819]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006893 - Golgi to plasma membrane transport [Evidence IMP] [PMID 9017592]; GO_process: GO:0031321 - ascospore-type prospore assembly [Evidence IMP] [PMID 9425151]; GO_process: GO:0006914 - autophagy [Evidence IGI,IMP] [PMID 20444978]; GO_process: GO:0007121 - bipolar cellular bud site selection [Evidence TAS] [PMID 10652251]; GO_process: GO:0006887 - exocytosis [Evidence IEA]; GO_process: GO:0006887 - exocytosis [Evidence IDA] [PMID 15772160]; GO_process: GO:0007107 - membrane addition at site of cytokinesis [Evidence IEP,IGI,IMP] [PMID 12456647]; GO_process: GO:0015031 - protein transport [Evidence IEA,IEA]; GO_process: GO:0007264 - small GTPase mediated signal transduction [Evidence IEA]; GO_process: GO:0007264 - small GTPase mediated signal transduction [Evidence TAS] [PMID 10652251]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0006906 - vesicle fusion [Evidence IMP] [PMID 9017592]; Rab family GTPase SEC4 1229757 SEC4 30037207 SEC4 Sugiyamaella lignohabitans Rab family GTPase SEC4 XP_018736532.1 1229137 R 796027 CDS AWJ20_5012 30037208 1231035..1232819 D 1 NC_031673.1 Beta subunit of cytoplasmic phenylalanyl-tRNA synthetase; forms a tetramer with Frs2p to generate active enzyme; able to hydrolyze mis-aminoacylated tRNA-Phe, which could contribute to translational quality control; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0009328 - phenylalanine-tRNA ligase complex [Evidence IDA] [PMID 3049607]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0004812 - aminoacyl-tRNA ligase activity [Evidence IEA]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0000287 - magnesium ion binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_function: GO:0004826 - phenylalanine-tRNA ligase activity [Evidence IEA,IEA]; GO_function: GO:0004826 - phenylalanine-tRNA ligase activity [Evidence IDA] [PMID 16162501]; GO_function: GO:0004826 - phenylalanine-tRNA ligase activity [Evidence IDA] [PMID 166841]; GO_process: GO:0006432 - phenylalanyl-tRNA aminoacylation [Evidence IEA]; GO_process: GO:0006432 - phenylalanyl-tRNA aminoacylation [Evidence IDA] [PMID 16162501]; GO_process: GO:0006432 - phenylalanyl-tRNA aminoacylation [Evidence IDA] [PMID 166841]; GO_process: GO:0006412 - translation [Evidence IEA]; phenylalanine--tRNA ligase subunit beta 1232819 FRS1 30037208 FRS1 Sugiyamaella lignohabitans phenylalanine--tRNA ligase subunit beta XP_018736533.1 1231035 D 796027 CDS AWJ20_5013 30037209 1233180..1233944 D 1 NC_031673.1 uncharacterized protein 1233944 30037209 AWJ20_5013 Sugiyamaella lignohabitans uncharacterized protein XP_018736534.1 1233180 D 796027 CDS AWJ20_5014 30037210 complement(1233984..1236176) D 1 NC_031673.1 uncharacterized protein 1236176 30037210 AWJ20_5014 Sugiyamaella lignohabitans uncharacterized protein XP_018736535.1 1233984 R 796027 CDS AWJ20_5015 30037211 1238407..1238793 D 1 NC_031673.1 Co-chaperone that binds and regulates Hsp90 family chaperones; plays a role in determining prion variants; important for pp60v-src activity in yeast; homologous to the mammalian p23 proteins, and like p23 can regulate telomerase activity; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 10207098]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 10207098]; GO_function: GO:0051087 - chaperone binding [Evidence IMP,IPI] [PMID 9632755]; GO_process: GO:0043392 - negative regulation of DNA binding [Evidence IDA] [PMID 23022381]; GO_process: GO:0032212 - positive regulation of telomere maintenance via telomerase [Evidence IDA,IMP] [PMID 17389357]; GO_process: GO:0006457 - protein folding [Evidence IMP,IPI] [PMID 9632755]; GO_process: GO:0051972 - regulation of telomerase activity [Evidence IDA,IMP] [PMID 17389357]; Sba1p 1238793 SBA1 30037211 SBA1 Sugiyamaella lignohabitans Sba1p XP_018736536.1 1238407 D 796027 CDS AWJ20_5016 30037212 complement(1239003..1240046) D 1 NC_031673.1 hypothetical protein that associates with translating ribosomes; interacts with GTPase Rbg1p; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 10684247]; GO_component: GO:0042788 - polysomal ribosome [Evidence IDA] [PMID 21076151]; GO_component: GO:0005840 - ribosome [Evidence IDA] [PMID 16702403]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_function: GO:0046872 - metal ion binding [Evidence IEA,IEA]; GO_process: GO:0002181 - cytoplasmic translation [Evidence IGI] [PMID 21076151]; Tma46p 1240046 TMA46 30037212 TMA46 Sugiyamaella lignohabitans Tma46p XP_018736537.1 1239003 R 796027 CDS AWJ20_5017 30037213 1240271..1241281 D 1 NC_031673.1 Essential subunit of the COMPASS (Set1C) complex; COMPASS methylates histone H3 on lysine 4 and is required in transcriptional silencing near telomeres; WD40 beta propeller superfamily member and ortholog of mammalian WDR5; GO_component: GO:0048188 - Set1C/COMPASS complex [Evidence IPI] [PMID 11687631]; GO_component: GO:0048188 - Set1C/COMPASS complex [Evidence IPI] [PMID 11742990]; GO_component: GO:0048188 - Set1C/COMPASS complex [Evidence IPI] [PMID 11752412]; GO_component: GO:0005694 - chromosome [Evidence IEA]; GO_component: GO:0000781 - chromosome, telomeric region [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0042800 - histone methyltransferase activity (H3-K4 specific) [Evidence IDA] [PMID 11742990]; GO_function: GO:0042800 - histone methyltransferase activity (H3-K4 specific) [Evidence IMP] [PMID 11752412]; GO_function: GO:0042800 - histone methyltransferase activity (H3-K4 specific) [Evidence IDA,IMP] [PMID 11805083]; GO_process: GO:0006348 - chromatin silencing at telomere [Evidence IMP] [PMID 11687631]; GO_process: GO:0006348 - chromatin silencing at telomere [Evidence IMP] [PMID 11752412]; GO_process: GO:0006348 - chromatin silencing at telomere [Evidence IMP] [PMID 11805083]; GO_process: GO:0051568 - histone H3-K4 methylation [Evidence IDA] [PMID 11742990]; GO_process: GO:0051568 - histone H3-K4 methylation [Evidence IDA,IMP] [PMID 11752412]; GO_process: GO:0051568 - histone H3-K4 methylation [Evidence IDA,IMP] [PMID 11805083]; GO_process: GO:0000723 - telomere maintenance [Evidence IMP] [PMID 11742990]; Swd3p 1241281 SWD3 30037213 SWD3 Sugiyamaella lignohabitans Swd3p XP_018736538.1 1240271 D 796027 CDS AWJ20_5018 30037214 complement(1241368..1242987) D 1 NC_031673.1 uncharacterized protein 1242987 30037214 AWJ20_5018 Sugiyamaella lignohabitans uncharacterized protein XP_018736539.1 1241368 R 796027 CDS AWJ20_5019 30037215 1248508..1249443 D 1 NC_031673.1 uncharacterized protein 1249443 30037215 AWJ20_5019 Sugiyamaella lignohabitans uncharacterized protein XP_018736540.1 1248508 D 796027 CDS AWJ20_5020 30037217 complement(1249516..1251216) D 1 NC_031673.1 Putative amidase; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0004040 - amidase activity [Evidence IEA]; GO_function: GO:0004040 - amidase activity [Evidence ISS] [PMID 2263500]; GO_function: GO:0016884 - carbon-nitrogen ligase activity, with glutamine as amido-N-donor [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016811 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides [Evidence IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0008152 - metabolic process [Evidence IEA,IEA,IEA]; Amd2p 1251216 AMD2 30037217 AMD2 Sugiyamaella lignohabitans Amd2p XP_018736541.1 1249516 R 796027 CDS AWJ20_5021 30037218 complement(1252932..1253921) D 1 NC_031673.1 Coproporphyrinogen III oxidase; an oxygen requiring enzyme that catalyzes the sixth step in the heme biosynthetic pathway; transcription is repressed by oxygen and heme (via Rox1p and Hap1p); GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 3516695]; GO_function: GO:0004109 - coproporphyrinogen oxidase activity [Evidence IEA,IEA]; GO_function: GO:0004109 - coproporphyrinogen oxidase activity [Evidence IMP] [PMID 2838478]; GO_function: GO:0004109 - coproporphyrinogen oxidase activity [Evidence IDA] [PMID 3516695]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_process: GO:0006783 - heme biosynthetic process [Evidence IEA]; GO_process: GO:0006783 - heme biosynthetic process [Evidence IMP] [PMID 7035824]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0006779 - porphyrin-containing compound biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0006782 - protoporphyrinogen IX biosynthetic process [Evidence IEA]; coproporphyrinogen oxidase 1253921 HEM13 30037218 HEM13 Sugiyamaella lignohabitans coproporphyrinogen oxidase XP_018736542.1 1252932 R 796027 CDS AWJ20_5022 30037219 1254180..1255046 D 1 NC_031673.1 Methyltransferase required for m3U2634 methylation of the 25S rRNA; S-adenosylmethionine-dependent; associates with precursors of the 60S ribosomal subunit; predicted to be involved in ribosome biogenesis; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 24335083]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity [Evidence IDA,ISS] [PMID 21858014]; GO_function: GO:0070042 - rRNA (uridine-N3-)-methyltransferase activity [Evidence IMP] [PMID 24335083]; GO_process: GO:0032259 - methylation [Evidence IC] [PMID 21858014]; GO_process: GO:0070475 - rRNA base methylation [Evidence IMP] [PMID 24335083]; Bmt5p 1255046 BMT5 30037219 BMT5 Sugiyamaella lignohabitans Bmt5p XP_018736543.1 1254180 D 796027 CDS AWJ20_5023 30037220 complement(1255304..1256500) D 1 NC_031673.1 Subunit of GID complex; involved in proteasome-dependent catabolite inactivation of gluconeogenic enzymes FBPase, PEPCK, and c-MDH; forms dimer with Rmd5p that is then recruited to GID Complex by Gid8p; contains a degenerate RING finger motif needed for GID complex ubiquitin ligase activity in vivo, as well as CTLH and CRA domains; plays role in anti-apoptosis; required for survival upon exposure to K1 killer toxin; GO_component: GO:0034657 - GID complex [Evidence IDA] [PMID 16872538]; GO_component: GO:0034657 - GID complex [Evidence IDA] [PMID 18508925]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence IMP] [PMID 22044534]; GO_process: GO:0043066 - negative regulation of apoptotic process [Evidence IMP] [PMID 18355271]; GO_process: GO:0045721 - negative regulation of gluconeogenesis [Evidence IMP] [PMID 12686616]; GO_process: GO:0043161 - proteasome-mediated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 12686616]; glucose-induced degradation complex subunit FYV10 1256500 FYV10 30037220 FYV10 Sugiyamaella lignohabitans glucose-induced degradation complex subunit FYV10 XP_018736544.1 1255304 R 796027 CDS AWJ20_5024 30037221 1257027..1258418 D 1 NC_031673.1 Protein required for the hydroxylation of heme O to form heme A; heme A is an essential prosthetic group for cytochrome c oxidase; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IDA] [PMID 9228094]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0016653 - oxidoreductase activity, acting on NAD(P)H, heme protein as acceptor [Evidence IMP] [PMID 11248251]; GO_function: GO:0016653 - oxidoreductase activity, acting on NAD(P)H, heme protein as acceptor [Evidence IGI] [PMID 11788607]; GO_function: GO:0016627 - oxidoreductase activity, acting on the CH-CH group of donors [Evidence IEA]; GO_process: GO:0006784 - heme a biosynthetic process [Evidence IEA]; GO_process: GO:0006784 - heme a biosynthetic process [Evidence IGI,IMP] [PMID 11788607]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; Cox15p 1258418 COX15 30037221 COX15 Sugiyamaella lignohabitans Cox15p XP_018736545.1 1257027 D 796027 CDS AWJ20_5025 30037222 complement(1258569..1260542) D 1 NC_031673.1 ER membrane hypothetical protein; forms an ER-membrane associated protein complex with Slp1p; identified along with SLP1 in a screen for mutants defective in the unfolded protein response (UPR); proposed to function in the folding of integral membrane proteins; interacts genetically with MPS1; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies; GO_component: GO:0030176 - integral component of endoplasmic reticulum membrane [Evidence IDA,ISM] [PMID 23275891]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0031966 - mitochondrial membrane [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0034975 - protein folding in endoplasmic reticulum [Evidence IGI] [PMID 19325107]; Emp65p 1260542 EMP65 30037222 EMP65 Sugiyamaella lignohabitans Emp65p XP_018736546.1 1258569 R 796027 CDS AWJ20_5026 30037223 1261350..1263032 D 1 NC_031673.1 ferroxidase FET3 1263032 FET3 30037223 FET3 Sugiyamaella lignohabitans ferroxidase FET3 XP_018736547.1 1261350 D 796027 CDS AWJ20_5027 30037224 complement(1263683..1265161) D 1 NC_031673.1 mRNA-binding protein NAB2 1265161 NAB2 30037224 NAB2 Sugiyamaella lignohabitans mRNA-binding protein NAB2 XP_018736548.1 1263683 R 796027 CDS AWJ20_5028 30037225 complement(1269076..1269888) D 1 NC_031673.1 uncharacterized protein 1269888 30037225 AWJ20_5028 Sugiyamaella lignohabitans uncharacterized protein XP_018736549.1 1269076 R 796027 CDS AWJ20_5029 30037226 1271912..1272628 D 1 NC_031673.1 Methylglyoxalase that converts methylglyoxal to D-lactate; involved in oxidative stress resistance, diauxic shift, and stationary phase survival; has similarity to E. coli Hsp31 and C. albicans Glx3p; member of the DJ-1/ThiJ/PfpI superfamily, which includes human DJ-1 involved in Parkinson's disease and cancer; exists as a dimer and contains a putative metal-binding site; protein abundance increases in response to DNA replication stress; GO_component: GO:0000932 - cytoplasmic mRNA processing body [Evidence IDA] [PMID 24706893]; GO_component: GO:0010494 - cytoplasmic stress granule [Evidence IDA] [PMID 24706893]; GO_function: GO:0019172 - glyoxalase III activity [Evidence IDA] [PMID 24302734]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_process: GO:0031669 - cellular response to nutrient levels [Evidence IMP] [PMID 24706893]; GO_process: GO:0034599 - cellular response to oxidative stress [Evidence IMP] [PMID 17395014]; GO_process: GO:0019243 - methylglyoxal catabolic process to D-lactate [Evidence IDA] [PMID 24302734]; GO_process: GO:0006508 - proteolysis [Evidence IEA]; GO_process: GO:0006950 - response to stress [Evidence IEA]; Hsp31p 1272628 HSP31 30037226 HSP31 Sugiyamaella lignohabitans Hsp31p XP_018736550.1 1271912 D 796027 CDS AWJ20_5030 30037228 1273705..1275372 D 1 NC_031673.1 Mitochondrial inner membrane Mg(2+) channel; required for maintenance of intramitochondrial Mg(2+) concentrations at the correct level to support splicing of group II introns; similar to bacterial CorA; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IDA] [PMID 10400670]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0015095 - magnesium ion transmembrane transporter activity [Evidence IEA]; GO_function: GO:0015095 - magnesium ion transmembrane transporter activity [Evidence IGI,IMP,ISS] [PMID 10400670]; GO_function: GO:0015095 - magnesium ion transmembrane transporter activity [Evidence IDA] [PMID 12628916]; GO_process: GO:0006811 - ion transport [Evidence IEA]; GO_process: GO:0015693 - magnesium ion transport [Evidence IEA]; GO_process: GO:0045016 - mitochondrial magnesium ion transport [Evidence IGI,IMP,ISS] [PMID 10400670]; GO_process: GO:0045016 - mitochondrial magnesium ion transport [Evidence IDA] [PMID 12628916]; GO_process: GO:0006810 - transport [Evidence IEA]; Mrs2p 1275372 MRS2 30037228 MRS2 Sugiyamaella lignohabitans Mrs2p XP_018736551.1 1273705 D 796027 CDS AWJ20_5031 30037229 complement(1276971..1277927) D 1 NC_031673.1 Aurora kinase of conserved chromosomal passenger complex; mediates release on mono-oriented kinetochores from microtubules in meiosis I, also release of kinetochores from cluster at SPBs at meiosis exit; helps maintain condensed chromosomes during anaphase, early telophase; required for SPB cohesion and prevention of multipolar spindle formation; Iocalizes to nuclear foci that diffuse upon DNA replication stress; required for inhibition of karyopherin Pse1p upon SAC arrest; GO_component: GO:0005694 - chromosome [Evidence IEA]; GO_component: GO:0032133 - chromosome passenger complex [Evidence IDA] [PMID 19158380]; GO_component: GO:0000775 - chromosome, centromeric region [Evidence IEA]; GO_component: GO:0000777 - condensed chromosome kinetochore [Evidence IEA]; GO_component: GO:0000778 - condensed nuclear chromosome kinetochore [Evidence IDA] [PMID 11511347]; GO_component: GO:0000778 - condensed nuclear chromosome kinetochore [Evidence IDA] [PMID 12566427]; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA]; GO_component: GO:0000776 - kinetochore [Evidence IEA]; GO_component: GO:0005828 - kinetochore microtubule [Evidence IDA] [PMID 11724818]; GO_component: GO:0005874 - microtubule [Evidence IDA] [PMID 22842922]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_component: GO:0005819 - spindle [Evidence IEA]; GO_component: GO:0005819 - spindle [Evidence IDA] [PMID 12566427]; GO_component: GO:0005876 - spindle microtubule [Evidence IDA] [PMID 11511347]; GO_component: GO:0005876 - spindle microtubule [Evidence IDA] [PMID 11724818]; GO_component: GO:0051233 - spindle midzone [Evidence IDA] [PMID 12566427]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0004672 - protein kinase activity [Evidence IEA]; GO_function: GO:0004672 - protein kinase activity [Evidence IDA] [PMID 10072382]; GO_function: GO:0004672 - protein kinase activity [Evidence IDA] [PMID 16143104]; GO_function: GO:0004672 - protein kinase activity [Evidence IDA] [PMID 16319894]; GO_function: GO:0004672 - protein kinase activity [Evidence IDA] [PMID 23142046]; GO_function: GO:0004674 - protein serine/threonine kinase activity [Evidence IEA,IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016772 - transferase activity, transferring phosphorus-containing groups [Evidence IEA]; GO_process: GO:0008608 - attachment of spindle microtubules to kinetochore [Evidence IMP] [PMID 10072382]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0007059 - chromosome segregation [Evidence IEA]; GO_process: GO:0007059 - chromosome segregation [Evidence IMP] [PMID 8293973]; GO_process: GO:0045143 - homologous chromosome segregation [Evidence IMP] [PMID 17289568]; GO_process: GO:0045144 - meiotic sister chromatid segregation [Evidence IMP] [PMID 17289568]; GO_process: GO:0045144 - meiotic sister chromatid segregation [Evidence IMP] [PMID 17371833]; GO_process: GO:0044774 - mitotic DNA integrity checkpoint [Evidence IGI] [PMID 16651657]; GO_process: GO:0051228 - mitotic spindle disassembly [Evidence IMP] [PMID 12566427]; GO_process: GO:1901925 - negative regulation of protein import into nucleus during spindle assembly checkpoint [Evidence IMP] [PMID 23177738]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; GO_process: GO:0090232 - positive regulation of spindle checkpoint [Evidence IMP] [PMID 16327780]; GO_process: GO:0006468 - protein phosphorylation [Evidence IEA]; GO_process: GO:0006468 - protein phosphorylation [Evidence IDA] [PMID 16319894]; GO_process: GO:0006468 - protein phosphorylation [Evidence IDA,IMP] [PMID 17504936]; GO_process: GO:0006468 - protein phosphorylation [Evidence IDA] [PMID 23142046]; GO_process: GO:0032465 - regulation of cytokinesis [Evidence IMP] [PMID 16615892]; aurora kinase 1277927 IPL1 30037229 IPL1 Sugiyamaella lignohabitans aurora kinase XP_018736552.1 1276971 R 796027 CDS AWJ20_5032 30037230 1278832..1281627 D 1 NC_031673.1 DuF1740 family protein 1281627 30037230 AWJ20_5032 Sugiyamaella lignohabitans DuF1740 family protein XP_018736553.1 1278832 D 796027 CDS AWJ20_5033 30037231 complement(1281796..1283331) D 1 NC_031673.1 Oxalyl-CoA synthetase; capable of catalyzing conversion of oxalate to oxalyl-CoA; catalyzes first step in pathway of oxalate degradation that functions to protect yeast from inhibitory effects of oxalate; peroxisomal protein that binds mRNA; localizes to both peroxisomal peripheral membrane and matrix, expression is highly inducible by oleic acid; similar to E. coli long chain acyl-CoA synthetase; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005782 - peroxisomal matrix [Evidence IEA]; GO_component: GO:0005782 - peroxisomal matrix [Evidence IDA] [PMID 8841414]; GO_component: GO:0005778 - peroxisomal membrane [Evidence IEA]; GO_component: GO:0005778 - peroxisomal membrane [Evidence IDA] [PMID 8841414]; GO_component: GO:0005777 - peroxisome [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 20844764]; GO_function: GO:0050203 - oxalate-CoA ligase activity [Evidence IDA,IMP] [PMID 24291261]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0033611 - oxalate catabolic process [Evidence IDA,IMP] [PMID 24291261]; Pcs60p 1283331 PCS60 30037231 PCS60 Sugiyamaella lignohabitans Pcs60p XP_018736554.1 1281796 R 796027 CDS AWJ20_5034 30037232 1284960..1285469 D 1 NC_031673.1 Conserved protein of the mitochondrial matrix; performs a scaffolding function during assembly of iron-sulfur clusters, interacts physically and functionally with yeast frataxin (Yfh1p); isu1 isu2 double mutant is inviable; ISU1 has a paralog, ISU2, that arose from the whole genome duplication; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA]; GO_component: GO:0005759 - mitochondrial matrix [Evidence IDA] [PMID 10468587]; GO_component: GO:0005759 - mitochondrial matrix [Evidence IDA] [PMID 15143178]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 11914276]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0051537 - 2 iron, 2 sulfur cluster binding [Evidence IEA]; GO_function: GO:0008198 - ferrous iron binding [Evidence IDA] [PMID 12970193]; GO_function: GO:0005506 - iron ion binding [Evidence IEA]; GO_function: GO:0051536 - iron-sulfur cluster binding [Evidence IEA,IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_process: GO:0006879 - cellular iron ion homeostasis [Evidence IMP,ISS] [PMID 10468587]; GO_process: GO:0016226 - iron-sulfur cluster assembly [Evidence IEA]; GO_process: GO:0016226 - iron-sulfur cluster assembly [Evidence IMP,ISS] [PMID 10588895]; GO_process: GO:0016226 - iron-sulfur cluster assembly [Evidence IGI] [PMID 12970193]; GO_process: GO:0016226 - iron-sulfur cluster assembly [Evidence IMP] [PMID 15143178]; GO_process: GO:0002098 - tRNA wobble uridine modification [Evidence IGI] [PMID 17283054]; iron-binding protein ISU1 1285469 ISU1 30037232 ISU1 Sugiyamaella lignohabitans iron-binding protein ISU1 XP_018736555.1 1284960 D 796027 CDS AWJ20_5035 30037233 1287201..1287989 D 1 NC_031673.1 Beta subunit of C-terminal domain kinase I (CTDK-I); which phosphorylates both RNA pol II subunit Rpo21p to affect transcription and pre-mRNA 3' end processing, and ribosomal protein Rps2p to increase translational fidelity; relocalizes to the cytosol in response to hypoxia; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 22932476]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 15520468]; GO_component: GO:0005654 - nucleoplasm [Evidence IDA] [PMID 15520468]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22932476]; GO_component: GO:0070692 - trimeric positive transcription elongation factor complex b [Evidence IDA] [PMID 7565723]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0019901 - protein kinase binding [Evidence IEA]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0031124 - mRNA 3'-end processing [Evidence IC] [PMID 11118453]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0032786 - positive regulation of DNA-templated transcription, elongation [Evidence IDA] [PMID 9110987]; GO_process: GO:0045943 - positive regulation of transcription from RNA polymerase I promoter [Evidence IMP] [PMID 15520468]; GO_process: GO:0045903 - positive regulation of translational fidelity [Evidence IPI] [PMID 17545469]; GO_process: GO:0006468 - protein phosphorylation [Evidence IPI] [PMID 7565723]; GO_process: GO:0000079 - regulation of cyclin-dependent protein serine/threonine kinase activity [Evidence IEA]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Ctk2p 1287989 CTK2 30037233 CTK2 Sugiyamaella lignohabitans Ctk2p XP_018736556.1 1287201 D 796027 CDS AWJ20_5036 30037234 complement(1288165..1290303) D 1 NC_031673.1 Ubiquitin-specific protease; specifically disassembles unanchored ubiquitin chains; involved in fructose-1,6-bisphosphatase (Fbp1p) degradation; similar to human isopeptidase T; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IC] [PMID 8982460]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0008234 - cysteine-type peptidase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0008242 - omega peptidase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_function: GO:0004843 - ubiquitin-specific protease activity [Evidence IDA] [PMID 19410548]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0045721 - negative regulation of gluconeogenesis [Evidence IMP] [PMID 12686616]; GO_process: GO:0043161 - proteasome-mediated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 12686616]; GO_process: GO:0006508 - proteolysis [Evidence IEA]; GO_process: GO:0006511 - ubiquitin-dependent protein catabolic process [Evidence IEA]; Ubp14p 1290303 UBP14 30037234 UBP14 Sugiyamaella lignohabitans Ubp14p XP_018736557.1 1288165 R 796027 CDS AWJ20_5037 30037235 complement(1291121..1292614) D 1 NC_031673.1 3-hydroxyisobutyryl-CoA hydrolase; member of a family of enoyl-CoA hydratase/isomerases; non-tagged protein is detected in highly purified mitochondria in high-throughput studies; phosphorylated; mutation affects fluid-phase endocytosis; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 17054397]; GO_function: GO:0003860 - 3-hydroxyisobutyryl-CoA hydrolase activity [Evidence IEA]; GO_function: GO:0003860 - 3-hydroxyisobutyryl-CoA hydrolase activity [Evidence IDA,ISS] [PMID 12697341]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0009083 - branched-chain amino acid catabolic process [Evidence IEA]; GO_process: GO:0006635 - fatty acid beta-oxidation [Evidence IMP] [PMID 12697341]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0006574 - valine catabolic process [Evidence IEA]; Ehd3p 1292614 EHD3 30037235 EHD3 Sugiyamaella lignohabitans Ehd3p XP_018736558.1 1291121 R 796027 CDS AWJ20_5038 30037236 join(1295898..1295966,1296240..1296617) D 1 NC_031673.1 Essential NTPase required for small ribosome subunit synthesis; mediates processing of the 20S pre-rRNA at site D in the cytoplasm but associates only transiently with 43S preribosomes via Rps14p, may be the endonuclease for site D; depletion leads to accumulation of pre-40S ribosomes in 80S-like ribosomes; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IMP] [PMID 16287850]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 10692169]; GO_component: GO:0030684 - preribosome [Evidence IPI] [PMID 16287850]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016887 - ATPase activity [Evidence IEA]; GO_function: GO:0004017 - adenylate kinase activity [Evidence IEA,IEA,IEA]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IMP,ISS] [PMID 16287850]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0034599 - cellular response to oxidative stress [Evidence IMP] [PMID 10692169]; GO_process: GO:0000462 - maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 12837249]; GO_process: GO:0000462 - maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP,IPI] [PMID 16287850]; GO_process: GO:0046939 - nucleotide phosphorylation [Evidence IEA,IEA,IEA]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0000056 - ribosomal small subunit export from nucleus [Evidence IMP] [PMID 16287850]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Fap7p 1296617 FAP7 30037236 FAP7 Sugiyamaella lignohabitans Fap7p XP_018736559.1 1295898 D 796027 CDS AWJ20_5039 30037237 complement(1296725..1298149) D 1 NC_031673.1 Kynureninase; required for the de novo biosynthesis of NAD from tryptophan via kynurenine; expression regulated by Hst1p; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0030429 - kynureninase activity [Evidence IEA,IEA,IEA]; GO_function: GO:0030429 - kynureninase activity [Evidence IMP] [PMID 12062417]; GO_function: GO:0030170 - pyridoxal phosphate binding [Evidence IEA,IEA]; GO_process: GO:0034354 - 'de novo' NAD biosynthetic process from tryptophan [Evidence IEA]; GO_process: GO:0034354 - 'de novo' NAD biosynthetic process from tryptophan [Evidence IGI] [PMID 12062417]; GO_process: GO:0097053 - L-kynurenine catabolic process [Evidence IEA]; GO_process: GO:0009435 - NAD biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0043420 - anthranilate metabolic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0019363 - pyridine nucleotide biosynthetic process [Evidence IEA]; GO_process: GO:0019805 - quinolinate biosynthetic process [Evidence IEA]; GO_process: GO:0006569 - tryptophan catabolic process [Evidence IEA,IEA]; kynureninase 1298149 BNA5 30037237 BNA5 Sugiyamaella lignohabitans kynureninase XP_018736560.1 1296725 R 796027 CDS AWJ20_5040 30037239 complement(1298629..1305069) D 1 NC_031673.1 NAD(+)-dependent glutamate synthase (GOGAT); synthesizes glutamate from glutamine and alpha-ketoglutarate; with Gln1p, forms the secondary pathway for glutamate biosynthesis from ammonia; expression regulated by nitrogen source; assembles into filaments as cells approach stationary phase and under cytosolic acidification and starvation conditions; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0051538 - 3 iron, 4 sulfur cluster binding [Evidence IEA]; GO_function: GO:0010181 - FMN binding [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO_function: GO:0016040 - glutamate synthase (NADH) activity [Evidence IEA,IEA]; GO_function: GO:0016040 - glutamate synthase (NADH) activity [Evidence IDA,IMP] [PMID 7836314]; GO_function: GO:0015930 - glutamate synthase activity [Evidence IEA]; GO_function: GO:0045181 - glutamate synthase activity, NAD(P)H as acceptor [Evidence IEA]; GO_function: GO:0005506 - iron ion binding [Evidence IEA]; GO_function: GO:0051536 - iron-sulfur cluster binding [Evidence IEA,IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0016638 - oxidoreductase activity, acting on the CH-NH2 group of donors [Evidence IEA]; GO_function: GO:0016639 - oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor [Evidence IEA]; GO_process: GO:0097054 - L-glutamate biosynthetic process [Evidence IEA]; GO_process: GO:0019676 - ammonia assimilation cycle [Evidence IEP] [PMID 11356843]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0006537 - glutamate biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0006537 - glutamate biosynthetic process [Evidence IEP] [PMID 9657994]; GO_process: GO:0006541 - glutamine metabolic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0006807 - nitrogen compound metabolic process [Evidence IEA,IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; glutamate synthase (NADH) 1305069 GLT1 30037239 GLT1 Sugiyamaella lignohabitans glutamate synthase (NADH) XP_018736561.1 1298629 R 796027 CDS AWJ20_5041 30037240 complement(1309311..1311152) D 1 NC_031673.1 Phosphatidylinositol-4-phosphate 5-kinase; involved in actin cytoskeleton organization and cell morphogenesis; multicopy suppressor of stt4 mutation; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9624177]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 9624177]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IEA]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IDA] [PMID 9624177]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IDA] [PMID 9624178]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016307 - phosphatidylinositol phosphate kinase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0031321 - ascospore-type prospore assembly [Evidence IGI] [PMID 19502581]; GO_process: GO:0046488 - phosphatidylinositol metabolic process [Evidence IEA]; GO_process: GO:0046854 - phosphatidylinositol phosphorylation [Evidence IDA] [PMID 9624177]; GO_process: GO:0046854 - phosphatidylinositol phosphorylation [Evidence IDA] [PMID 9624178]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; 1-phosphatidylinositol-4-phosphate 5-kinase 1311152 MSS4 30037240 MSS4 Sugiyamaella lignohabitans 1-phosphatidylinositol-4-phosphate 5-kinase XP_018736562.1 1309311 R 796027 CDS AWJ20_5042 30037241 complement(1319359..1320528) D 1 NC_031673.1 uncharacterized protein 1320528 30037241 AWJ20_5042 Sugiyamaella lignohabitans uncharacterized protein XP_018736563.1 1319359 R 796027 CDS AWJ20_5043 30037242 complement(1327063..1328058) D 1 NC_031673.1 eIF3i subunit of the eukaryotic translation initiation factor 3 (eIF3); subunit of the core complex of eIF3; essential for translation; stimulates rate of ribosomal scanning during translation reinitiation; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA,IEA]; GO_component: GO:0016282 - eukaryotic 43S preinitiation complex [Evidence IEA]; GO_component: GO:0033290 - eukaryotic 48S preinitiation complex [Evidence IEA]; GO_component: GO:0005852 - eukaryotic translation initiation factor 3 complex [Evidence IEA,IEA]; GO_component: GO:0005852 - eukaryotic translation initiation factor 3 complex [Evidence IDA,IPI] [PMID 9660829]; GO_component: GO:0005852 - eukaryotic translation initiation factor 3 complex [Evidence IDA,IPI] [PMID 9671501]; GO_component: GO:0043614 - multi-eIF complex [Evidence IDA] [PMID 11018020]; GO_component: GO:0043614 - multi-eIF complex [Evidence IDA] [PMID 15838098]; GO_function: GO:0003743 - translation initiation factor activity [Evidence IEA,IEA,IEA]; GO_function: GO:0003743 - translation initiation factor activity [Evidence IDA] [PMID 9671501]; GO_process: GO:0001731 - formation of translation preinitiation complex [Evidence IEA]; GO_process: GO:0006446 - regulation of translational initiation [Evidence IEA]; GO_process: GO:0006412 - translation [Evidence IEA]; GO_process: GO:0002188 - translation reinitiation [Evidence IMP] [PMID 20679478]; GO_process: GO:0006413 - translational initiation [Evidence IEA,IEA]; GO_process: GO:0006413 - translational initiation [Evidence IDA] [PMID 9671501]; translation initiation factor eIF3 subunit i 1328058 TIF34 30037242 TIF34 Sugiyamaella lignohabitans translation initiation factor eIF3 subunit i XP_018736564.1 1327063 R 796027 CDS AWJ20_5044 30037243 complement(1328507..1329097) D 1 NC_031673.1 Putative carboxymethylenebutenolidase; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies; YDL086W is not an essential gene; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0008806 - carboxymethylenebutenolidase activity [Evidence IEA]; GO_function: GO:0008806 - carboxymethylenebutenolidase activity [Evidence ISS] [PMID 10592175]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA,IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0008152 - metabolic process [Evidence IEA,IEA,IEA]; carboxymethylenebutenolidase 1329097 30037243 AWJ20_5044 Sugiyamaella lignohabitans carboxymethylenebutenolidase XP_018736565.1 1328507 R 796027 CDS AWJ20_5045 30037244 complement(1330201..1333344) D 1 NC_031673.1 allele of CaO19.8194; polyprotein of L1-like non-LTR retrotransposon Zorro 3 1333344 POL92 30037244 POL92 Sugiyamaella lignohabitans polyprotein of L1-like non-LTR retrotransposon Zorro 3 XP_018736566.1 1330201 R 796027 CDS AWJ20_5047 30037246 1336069..1337496 D 1 NC_031673.1 Subunit of a Golgi mannosyltransferase complex; complex mediates elongation of the polysaccharide mannan backbone; membrane protein of the mannosyltransferase family; other members of the complex are Anp1p, Mnn9p, Mnn11p, and Hoc1p; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA,IEA]; GO_component: GO:0000136 - alpha-1,6-mannosyltransferase complex [Evidence IDA] [PMID 10037752]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0000009 - alpha-1,6-mannosyltransferase activity [Evidence IDA] [PMID 10037752]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA]; GO_function: GO:0016758 - transferase activity, transferring hexosyl groups [Evidence IEA]; GO_process: GO:0000917 - barrier septum assembly [Evidence IMP] [PMID 16034811]; GO_process: GO:0000032 - cell wall mannoprotein biosynthetic process [Evidence IMP] [PMID 10037752]; GO_process: GO:0006487 - protein N-linked glycosylation [Evidence IMP] [PMID 23210626]; GO_process: GO:0006487 - protein N-linked glycosylation [Evidence IMP] [PMID 8991513]; Mnn10p 1337496 MNN10 30037246 MNN10 Sugiyamaella lignohabitans Mnn10p XP_018736567.1 1336069 D 796027 CDS AWJ20_5048 30037247 complement(1337529..1339802) D 1 NC_031673.1 uncharacterized protein 1339802 30037247 AWJ20_5048 Sugiyamaella lignohabitans uncharacterized protein XP_018736568.1 1337529 R 796027 CDS AWJ20_5049 30037248 complement(1340186..1340890) D 1 NC_031673.1 Zinc knuckle protein; involved in nuclear RNA processing and degradation as a component of the TRAMP complex; stimulates the poly(A) polymerase activity of Pap2p in vitro; AIR1 has a paralog, AIR2, that arose from the whole genome duplication; although Air1p and Air2p are homologous TRAMP subunits, they have nonredundant roles in regulation of substrate specificity of the exosome; GO_component: GO:0031499 - TRAMP complex [Evidence IDA] [PMID 15828860]; GO_component: GO:0031499 - TRAMP complex [Evidence IDA] [PMID 15935759]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 11489916]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0004652 - polynucleotide adenylyltransferase activity [Evidence IDA,IGI] [PMID 15935759]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0043629 - ncRNA polyadenylation [Evidence IDA] [PMID 15828860]; GO_process: GO:0071031 - nuclear mRNA surveillance of mRNA 3'-end processing [Evidence IGI] [PMID 17410208]; GO_process: GO:0071039 - nuclear polyadenylation-dependent CUT catabolic process [Evidence IGI] [PMID 18591258]; GO_process: GO:0071035 - nuclear polyadenylation-dependent rRNA catabolic process [Evidence IGI] [PMID 15935758]; GO_process: GO:0071035 - nuclear polyadenylation-dependent rRNA catabolic process [Evidence IGI] [PMID 18007593]; GO_process: GO:0071037 - nuclear polyadenylation-dependent snRNA catabolic process [Evidence IGI] [PMID 15935758]; GO_process: GO:0071036 - nuclear polyadenylation-dependent snoRNA catabolic process [Evidence IGI] [PMID 15935758]; GO_process: GO:0071038 - nuclear polyadenylation-dependent tRNA catabolic process [Evidence IDA] [PMID 15828860]; GO_process: GO:0071038 - nuclear polyadenylation-dependent tRNA catabolic process [Evidence IDA] [PMID 17643380]; Air1p 1340890 AIR1 30037248 AIR1 Sugiyamaella lignohabitans Air1p XP_018736569.1 1340186 R 796027 CDS AWJ20_5050 30037250 complement(1342494..1344104) D 1 NC_031673.1 Myo-inositol transporter; member of the sugar transporter superfamily; expressed constitutively; ITR2 has a paralog, ITR1, that arose from the whole genome duplication; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0016020 - membrane [Evidence ISS] [PMID 2040626]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 16233524]; GO_function: GO:0005365 - myo-inositol transmembrane transporter activity [Evidence IMP,ISS] [PMID 2040626]; GO_function: GO:0022891 - substrate-specific transmembrane transporter activity [Evidence IEA]; GO_function: GO:0022857 - transmembrane transporter activity [Evidence IEA]; GO_function: GO:0005215 - transporter activity [Evidence IEA]; GO_process: GO:0015798 - myo-inositol transport [Evidence IMP] [PMID 2040626]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; myo-inositol transporter ITR2 1344104 ITR2 30037250 ITR2 Sugiyamaella lignohabitans myo-inositol transporter ITR2 XP_018736570.1 1342494 R 796027 CDS AWJ20_5051 30037251 complement(1345381..1346190) D 1 NC_031673.1 uncharacterized protein 1346190 30037251 AWJ20_5051 Sugiyamaella lignohabitans uncharacterized protein XP_018736571.1 1345381 R 796027 CDS AWJ20_5052 30037252 complement(1346911..1347990) D 1 NC_031673.1 hypothetical protein; null mutant displays sensitivity to DNA damaging agents; may have a role in lipid metabolism, based on localization to lipid droplets; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005811 - lipid particle [Evidence IEA,IEA]; GO_component: GO:0005811 - lipid particle [Evidence IDA] [PMID 10515935]; GO_component: GO:0005811 - lipid particle [Evidence IDA] [PMID 24868093]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IMP] [PMID 12077312]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; Yim1p 1347990 YIM1 30037252 YIM1 Sugiyamaella lignohabitans Yim1p XP_018736572.1 1346911 R 796027 CDS AWJ20_5053 30037253 complement(1348734..1349327) D 1 NC_031673.1 Protein component of the small (40S) ribosomal subunit; homologous to mammalian ribosomal protein S8, no bacterial homolog; RPS8B has a paralog, RPS8A, that arose from the whole genome duplication; GO_component: GO:0030686 - 90S preribosome [Evidence IDA] [PMID 12150911]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0022627 - cytosolic small ribosomal subunit [Evidence IDA] [PMID 18782943]; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA,IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IDA] [PMID 18782943]; GO_process: GO:0002181 - cytoplasmic translation [Evidence IC] [PMID 18782943]; GO_process: GO:0000462 - maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IGI] [PMID 16246728]; GO_process: GO:0006412 - translation [Evidence IEA]; GO_process: GO:0006414 - translational elongation [Evidence IBA]; ribosomal 40S subunit protein S8B 1349327 RPS8B 30037253 RPS8B Sugiyamaella lignohabitans ribosomal 40S subunit protein S8B XP_018736573.1 1348734 R 796027 CDS AWJ20_5054 30037254 complement(1350308..1353286) D 1 NC_031673.1 Subunit of the DSC ubiquitin ligase complex; golgi-localized RING-finger ubiquitin ligase (E3) involved in sorting polar transmembrane domain containing membrane proteins to multivesicular bodies for delivery to the vacuole; proposed involvement in the quality control of misfolded TMD containing proteins; ortholog of fission yeast dsc1; GO_component: GO:0044695 - Dsc E3 ubiquitin ligase complex [Evidence IDA] [PMID 22681890]; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0005794 - Golgi apparatus [Evidence IDA] [PMID 11788821]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence IMP,ISS] [PMID 11788821]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0016567 - protein ubiquitination [Evidence IEA]; GO_process: GO:0016567 - protein ubiquitination [Evidence IMP] [PMID 11788821]; GO_process: GO:0043162 - ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway [Evidence IMP] [PMID 11788821]; ubiquitin-protein ligase TUL1 1353286 TUL1 30037254 TUL1 Sugiyamaella lignohabitans ubiquitin-protein ligase TUL1 XP_018736574.1 1350308 R 796027 CDS AWJ20_5055 30037255 complement(1355432..1355791) D 1 NC_031673.1 mitochondrial iron ion transporter (predicted) 1355791 30037255 AWJ20_5055 Sugiyamaella lignohabitans mitochondrial iron ion transporter (predicted) XP_018736575.1 1355432 R 796027 CDS AWJ20_5056 30037256 1356622..1357437 D 1 NC_031673.1 uncharacterized protein 1357437 30037256 AWJ20_5056 Sugiyamaella lignohabitans uncharacterized protein XP_018736576.1 1356622 D 796027 CDS AWJ20_5057 30037257 complement(1357696..1358889) D 1 NC_031673.1 Mitochondrial isoleucyl-tRNA synthetase; null mutant is deficient in respiratory growth; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IMP] [PMID 7607232]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0002161 - aminoacyl-tRNA editing activity [Evidence IEA]; GO_function: GO:0004812 - aminoacyl-tRNA ligase activity [Evidence IEA,IEA]; GO_function: GO:0004822 - isoleucine-tRNA ligase activity [Evidence IEA,IEA]; GO_function: GO:0004822 - isoleucine-tRNA ligase activity [Evidence ISA] [PMID 7607232]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_process: GO:0006428 - isoleucyl-tRNA aminoacylation [Evidence IEA]; GO_process: GO:0006428 - isoleucyl-tRNA aminoacylation [Evidence ISA] [PMID 7607232]; GO_process: GO:0070152 - mitochondrial isoleucyl-tRNA aminoacylation [Evidence IC] [PMID 7607232]; GO_process: GO:0032543 - mitochondrial translation [Evidence IMP] [PMID 7607232]; GO_process: GO:0006450 - regulation of translational fidelity [Evidence IEA]; GO_process: GO:0006418 - tRNA aminoacylation for protein translation [Evidence IEA]; GO_process: GO:0006412 - translation [Evidence IEA]; isoleucine--tRNA ligase ISM1 1358889 ISM1 30037257 ISM1 Sugiyamaella lignohabitans isoleucine--tRNA ligase ISM1 XP_018736577.1 1357696 R 796027 CDS AWJ20_5058 30037258 complement(1358988..1360775) D 1 NC_031673.1 Mitochondrial isoleucyl-tRNA synthetase; null mutant is deficient in respiratory growth; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IMP] [PMID 7607232]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0002161 - aminoacyl-tRNA editing activity [Evidence IEA]; GO_function: GO:0004812 - aminoacyl-tRNA ligase activity [Evidence IEA,IEA]; GO_function: GO:0004822 - isoleucine-tRNA ligase activity [Evidence IEA,IEA]; GO_function: GO:0004822 - isoleucine-tRNA ligase activity [Evidence ISA] [PMID 7607232]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_process: GO:0006428 - isoleucyl-tRNA aminoacylation [Evidence IEA]; GO_process: GO:0006428 - isoleucyl-tRNA aminoacylation [Evidence ISA] [PMID 7607232]; GO_process: GO:0070152 - mitochondrial isoleucyl-tRNA aminoacylation [Evidence IC] [PMID 7607232]; GO_process: GO:0032543 - mitochondrial translation [Evidence IMP] [PMID 7607232]; GO_process: GO:0006450 - regulation of translational fidelity [Evidence IEA]; GO_process: GO:0006418 - tRNA aminoacylation for protein translation [Evidence IEA]; GO_process: GO:0006412 - translation [Evidence IEA]; isoleucine--tRNA ligase ISM1 1360775 ISM1 30037258 ISM1 Sugiyamaella lignohabitans isoleucine--tRNA ligase ISM1 XP_018736578.1 1358988 R 796027 CDS AWJ20_5059 30037259 1361102..1361659 D 1 NC_031673.1 Mitochondrial ribosomal protein of the large subunit; localizes to vacuole in response to H2O2; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0005762 - mitochondrial large ribosomal subunit [Evidence IDA] [PMID 9151978]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IDA] [PMID 9151978]; GO_process: GO:0032543 - mitochondrial translation [Evidence IC] [PMID 9151978]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; mitochondrial 54S ribosomal protein YmL11 1361659 MRPL11 30037259 MRPL11 Sugiyamaella lignohabitans mitochondrial 54S ribosomal protein YmL11 XP_018736579.1 1361102 D 796027 CDS AWJ20_5061 30037262 complement(1364424..1364921) D 1 NC_031673.1 uncharacterized protein 1364921 30037262 AWJ20_5061 Sugiyamaella lignohabitans uncharacterized protein XP_018736580.1 1364424 R 796027 CDS AWJ20_5062 30037263 complement(1365514..1365948) D 1 NC_031673.1 Component of glutamine amidotransferase (GATase II); forms a complex with Dug2p to degrade glutathione (GSH) and other peptides containing a gamma-glu-X bond in an alternative pathway to GSH degradation by gamma-glutamyl transpeptidase (Ecm38p); GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 17179087]; GO_function: GO:0004044 - amidophosphoribosyltransferase activity [Evidence ISS] [PMID 17179087]; GO_function: GO:0003840 - gamma-glutamyltransferase activity [Evidence IDA,IMP] [PMID 22277648]; GO_function: GO:0008242 - omega peptidase activity [Evidence IGI] [PMID 17179087]; GO_function: GO:0008233 - peptidase activity [Evidence IGI] [PMID 17179087]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006541 - glutamine metabolic process [Evidence IEA]; GO_process: GO:0006751 - glutathione catabolic process [Evidence IMP] [PMID 17179087]; GO_process: GO:0006751 - glutathione catabolic process [Evidence IDA,IMP] [PMID 22277648]; glutamine amidotransferase subunit DUG3 1365948 DUG3 30037263 DUG3 Sugiyamaella lignohabitans glutamine amidotransferase subunit DUG3 XP_018736581.1 1365514 R 796027 CDS AWJ20_5063 30037264 1368489..1369106 D 1 NC_031673.1 uncharacterized protein 1369106 30037264 AWJ20_5063 Sugiyamaella lignohabitans uncharacterized protein XP_018736582.1 1368489 D 796027 CDS AWJ20_5064 30037265 1369418..1370608 D 1 NC_031673.1 Pre-mRNA splicing factor; facilitates the cooperative formation of U2/U6 helix II in association with stem II in the spliceosome, function may be regulated by Slu7p; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005681 - spliceosomal complex [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008380 - RNA splicing [Evidence IEA]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0000398 - mRNA splicing, via spliceosome [Evidence IGI] [PMID 9528778]; Ecm2p 1370608 ECM2 30037265 ECM2 Sugiyamaella lignohabitans Ecm2p XP_018736583.1 1369418 D 796027 CDS AWJ20_5065 30037266 1376232..1379345 D 1 NC_031673.1 SUMO E3 ligase; catalyzes sumoylation of Yku70p/Yku80p and Sir4p promoting chromatin anchoring; DNA-bound form catalyzes a DNA-damaged triggered sumoylation wave resulting in multisite modification of several DNA repair proteins, enhancing interactions between these proteins and accelerating repair; promotes telomere anchoring to the nuclear envelope; involved in maintenance of proper telomere length; NFI1 has a paralog, SIZ1, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0000790 - nuclear chromatin [Evidence IDA] [PMID 16204216]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0019789 - SUMO ligase activity [Evidence IDA] [PMID 12761287]; GO_function: GO:0019789 - SUMO ligase activity [Evidence IMP] [PMID 23122649]; GO_function: GO:0003690 - double-stranded DNA binding [Evidence IDA,IMP] [PMID 23122649]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0030261 - chromosome condensation [Evidence TAS] [PMID 12402242]; GO_process: GO:0007059 - chromosome segregation [Evidence IMP] [PMID 16204216]; GO_process: GO:0060969 - negative regulation of gene silencing [Evidence IMP] [PMID 22345352]; GO_process: GO:0016925 - protein sumoylation [Evidence IEA]; GO_process: GO:0016925 - protein sumoylation [Evidence IDA] [PMID 12761287]; GO_process: GO:0016925 - protein sumoylation [Evidence IMP] [PMID 22345352]; GO_process: GO:0016925 - protein sumoylation [Evidence IMP] [PMID 23122649]; SUMO ligase NFI1 1379345 NFI1 30037266 NFI1 Sugiyamaella lignohabitans SUMO ligase NFI1 XP_018736584.1 1376232 D 796027 CDS AWJ20_5066 30037267 1380282..1380818 D 1 NC_031673.1 Alpha 2 subunit of the 20S proteasome; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IC] [PMID 9087403]; GO_component: GO:0042175 - nuclear outer membrane-endoplasmic reticulum membrane network [Evidence IC] [PMID 9087403]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IC] [PMID 9087403]; GO_component: GO:0000502 - proteasome complex [Evidence IEA]; GO_component: GO:0005839 - proteasome core complex [Evidence IEA]; GO_component: GO:0019773 - proteasome core complex, alpha-subunit complex [Evidence IEA]; GO_component: GO:0019773 - proteasome core complex, alpha-subunit complex [Evidence IDA] [PMID 9087403]; GO_component: GO:0034515 - proteasome storage granule [Evidence IDA] [PMID 18504300]; GO_function: GO:0004175 - endopeptidase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_function: GO:0004298 - threonine-type endopeptidase activity [Evidence IEA,IEA]; GO_process: GO:0010499 - proteasomal ubiquitin-independent protein catabolic process [Evidence IDA] [PMID 19162040]; GO_process: GO:0043161 - proteasome-mediated ubiquitin-dependent protein catabolic process [Evidence IDA] [PMID 11545745]; GO_process: GO:0043161 - proteasome-mediated ubiquitin-dependent protein catabolic process [Evidence IDA] [PMID 19029916]; GO_process: GO:0006508 - proteolysis [Evidence IEA]; GO_process: GO:0051603 - proteolysis involved in cellular protein catabolic process [Evidence IEA]; GO_process: GO:0006511 - ubiquitin-dependent protein catabolic process [Evidence IEA]; proteasome core particle subunit alpha 2 1380818 PRE8 30037267 PRE8 Sugiyamaella lignohabitans proteasome core particle subunit alpha 2 XP_018736585.1 1380282 D 796027 CDS AWJ20_5067 30037268 1384627..1385268 D 1 NC_031673.1 Carbonic anhydrase; metalloenzyme that catalyzes CO2 hydration to bicarbonate, which is an important metabolic substrate, and protons; not expressed under conditions of high CO2, such as inside a growing colony, but transcription is induced in response to low CO2 levels, such as on the colony surface in ambient air; poorly transcribed under aerobic conditions and at an undetectable level under anaerobic conditions; abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IEA]; GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IDA] [PMID 22984289]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0004089 - carbonate dehydratase activity [Evidence IEA,IEA]; GO_function: GO:0004089 - carbonate dehydratase activity [Evidence IDA] [PMID 15096093]; GO_function: GO:0004089 - carbonate dehydratase activity [Evidence IDA] [PMID 15813743]; GO_function: GO:0016829 - lyase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0015976 - carbon utilization [Evidence IEA]; GO_process: GO:0071244 - cellular response to carbon dioxide [Evidence IMP] [PMID 22253597]; GO_process: GO:0034599 - cellular response to oxidative stress [Evidence IMP] [PMID 15096093]; GO_process: GO:0008152 - metabolic process [Evidence IEA,IEA,IEA]; carbonate dehydratase NCE103 1385268 NCE103 30037268 NCE103 Sugiyamaella lignohabitans carbonate dehydratase NCE103 XP_018736586.1 1384627 D 796027 CDS AWJ20_5068 30037269 1393051..1395753 D 1 NC_031673.1 transcriptional regulator NRG1 1395753 NRG1 30037269 NRG1 Sugiyamaella lignohabitans transcriptional regulator NRG1 XP_018736587.1 1393051 D 796027 CDS AWJ20_5069 30037270 1396657..1397757 D 1 NC_031673.1 Protein disulfide isomerase; multifunctional protein of ER lumen, essential for formation of disulfide bonds in secretory and cell-surface proteins, unscrambles non-native disulfide bonds; key regulator of Ero1p; forms complex with Mnl1p that has exomannosidase activity, processing unfolded protein-bound Man8GlcNAc2 oligosaccharides to Man7GlcNAc2, promoting degradation in unfolded protein response; PDI1 has a paralog, EUG1, that arose from the whole genome duplication; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA,IEA]; GO_component: GO:0005788 - endoplasmic reticulum lumen [Evidence IEA]; GO_component: GO:0005788 - endoplasmic reticulum lumen [Evidence IDA] [PMID 1761554]; GO_function: GO:0016853 - isomerase activity [Evidence IEA,IEA]; GO_function: GO:0005515 - protein binding [Evidence IPI] [PMID 16002399]; GO_function: GO:0003756 - protein disulfide isomerase activity [Evidence IEA]; GO_function: GO:0003756 - protein disulfide isomerase activity [Evidence IMP] [PMID 11157982]; GO_function: GO:0003756 - protein disulfide isomerase activity [Evidence IDA] [PMID 16002399]; GO_function: GO:0003756 - protein disulfide isomerase activity [Evidence IDA] [PMID 16413482]; GO_function: GO:0015035 - protein disulfide oxidoreductase activity [Evidence IEA]; GO_function: GO:0015035 - protein disulfide oxidoreductase activity [Evidence IDA] [PMID 16002399]; GO_function: GO:0051082 - unfolded protein binding [Evidence IDA] [PMID 16002399]; GO_process: GO:0045454 - cell redox homeostasis [Evidence IEA]; GO_process: GO:0006662 - glycerol ether metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; GO_process: GO:0006457 - protein folding [Evidence IMP] [PMID 11157982]; protein disulfide isomerase PDI1 1397757 PDI1 30037270 PDI1 Sugiyamaella lignohabitans protein disulfide isomerase PDI1 XP_018736588.1 1396657 D 796027 CDS AWJ20_5070 30037272 complement(1399263..1400159) D 1 NC_031673.1 hypothetical protein; required for normal localization of actin patches and for normal tolerance of sodium ions and hydrogen peroxide; localizes to both cytoplasm and nucleus; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; Apd1p 1400159 APD1 30037272 APD1 Sugiyamaella lignohabitans Apd1p XP_018736589.1 1399263 R 796027 CDS AWJ20_5071 30037273 1403071..1404102 D 1 NC_031673.1 similar to Erwinia pyrifoliae Ep1/96 (NCBI:YP_002650176.1); uncharacterized protein 1404102 30037273 AWJ20_5071 Sugiyamaella lignohabitans uncharacterized protein XP_018736590.1 1403071 D 796027 CDS AWJ20_5072 30037274 1404620..1406956 D 1 NC_031673.1 Meiotic expression up-regulated protein-like protein 1406956 30037274 AWJ20_5072 Sugiyamaella lignohabitans Meiotic expression up-regulated protein-like protein XP_018736591.1 1404620 D 796027 CDS AWJ20_5073 30037275 complement(1407424..1408662) D 1 NC_031673.1 Cell wall protein related to glucanases; possibly involved in cell wall septation; member of the SUN family; SUN4 has a paralog, SIM1, that arose from the whole genome duplication; GO_component: GO:0005618 - cell wall [Evidence IEA,IEA]; GO_component: GO:0005576 - extracellular region [Evidence IEA]; GO_component: GO:0009277 - fungal-type cell wall [Evidence IDA] [PMID 11958935]; GO_component: GO:0005759 - mitochondrial matrix [Evidence TAS] [PMID 11958935]; GO_function: GO:0015926 - glucosidase activity [Evidence ISS] [PMID 9748433]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016798 - hydrolase activity, acting on glycosyl bonds [Evidence IEA]; GO_process: GO:0000917 - barrier septum assembly [Evidence IEA]; GO_process: GO:0005975 - carbohydrate metabolic process [Evidence IEA]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0007005 - mitochondrion organization [Evidence TAS] [PMID 11958935]; GO_process: GO:0000272 - polysaccharide catabolic process [Evidence IEA]; putative glucosidase SUN4 1408662 SUN4 30037275 SUN4 Sugiyamaella lignohabitans putative glucosidase SUN4 XP_018736592.1 1407424 R 796027 CDS AWJ20_5074 30037276 complement(1413920..1415080) D 1 NC_031673.1 uncharacterized protein 1415080 30037276 AWJ20_5074 Sugiyamaella lignohabitans uncharacterized protein XP_018736593.1 1413920 R 796027 CDS AWJ20_5075 30037277 complement(1416370..1417551) D 1 NC_031673.1 uncharacterized protein 1417551 30037277 AWJ20_5075 Sugiyamaella lignohabitans uncharacterized protein XP_018736594.1 1416370 R 796027 CDS AWJ20_5076 30037278 1423991..1424656 D 1 NC_031673.1 Alpha subunit of the nascent polypeptide-associated complex (NAC); involved in protein sorting and translocation; associated with cytoplasmic ribosomes; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005854 - nascent polypeptide-associated complex [Evidence IDA] [PMID 10219998]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0070300 - phosphatidic acid binding [Evidence IDA] [PMID 16343487]; GO_function: GO:0080025 - phosphatidylinositol-3,5-bisphosphate binding [Evidence IDA] [PMID 16343487]; GO_function: GO:0032266 - phosphatidylinositol-3-phosphate binding [Evidence IDA] [PMID 16343487]; GO_function: GO:0070273 - phosphatidylinositol-4-phosphate binding [Evidence IDA] [PMID 16343487]; GO_function: GO:0051082 - unfolded protein binding [Evidence IMP] [PMID 9482879]; GO_process: GO:0051083 - 'de novo' cotranslational protein folding [Evidence IPI] [PMID 10219998]; GO_process: GO:0006620 - posttranslational protein targeting to membrane [Evidence IGI] [PMID 10518932]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Egd2p 1424656 EGD2 30037278 EGD2 Sugiyamaella lignohabitans Egd2p XP_018736595.1 1423991 D 796027 CDS AWJ20_5077 30037279 complement(1427843..1429981) D 1 NC_031673.1 Poly(A) binding protein; part of the 3'-end RNA-processing complex, mediates interactions between the 5' cap structure and the 3' mRNA poly(A) tail, involved in control of poly(A) tail length, interacts with translation factor eIF-4G; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 15630021]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 15769879]; GO_component: GO:0010494 - cytoplasmic stress granule [Evidence IDA] [PMID 17908917]; GO_component: GO:0010494 - cytoplasmic stress granule [Evidence IDA] [PMID 18981231]; GO_component: GO:0010494 - cytoplasmic stress granule [Evidence IDA] [PMID 19470581]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11914276]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 15630021]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 15769879]; GO_component: GO:0005840 - ribosome [Evidence IDA] [PMID 8631901]; GO_function: GO:0003723 - RNA binding [Evidence IEA,IEA]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0008143 - poly(A) binding [Evidence IDA,IMP] [PMID 9193001]; GO_function: GO:0008428 - ribonuclease inhibitor activity [Evidence IDA] [PMID 11889048]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0051028 - mRNA transport [Evidence IEA]; GO_process: GO:0060211 - regulation of nuclear-transcribed mRNA poly(A) tail shortening [Evidence IDA,IMP] [PMID 17766253]; GO_process: GO:0006417 - regulation of translation [Evidence IEA]; GO_process: GO:0006446 - regulation of translational initiation [Evidence IDA,IMP] [PMID 10357826]; GO_process: GO:0006810 - transport [Evidence IEA]; polyadenylate-binding protein 1429981 PAB1 30037279 PAB1 Sugiyamaella lignohabitans polyadenylate-binding protein XP_018736596.1 1427843 R 796027 CDS AWJ20_5078 30037280 complement(1431000..1434689) D 1 NC_031673.1 Chromatin remodeler that regulates various aspects of transcription; acts in in conjunction with Isw1b to regulate chromatin structure and maintain chromatin integrity during transcription elongation by RNAP II by preventing trans-histone exchange over coding regions; contains a chromo domain, a helicase domain and a DNA-binding domain; component of both the SAGA and SLIK complexes; GO_component: GO:0000124 - SAGA complex [Evidence IDA] [PMID 15647753]; GO_component: GO:0046695 - SLIK (SAGA-like) complex [Evidence IDA] [PMID 15647753]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0000790 - nuclear chromatin [Evidence IDA] [PMID 12504018]; GO_component: GO:0000790 - nuclear chromatin [Evidence IDA] [PMID 12682017]; GO_component: GO:0030874 - nucleolar chromatin [Evidence IDA] [PMID 17259992]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0003677 - DNA binding [Evidence IDA] [PMID 21623345]; GO_function: GO:0008094 - DNA-dependent ATPase activity [Evidence IDA] [PMID 10811623]; GO_function: GO:0031490 - chromatin DNA binding [Evidence IDA] [PMID 12682017]; GO_function: GO:0004386 - helicase activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0035064 - methylated histone binding [Evidence IDA] [PMID 15647753]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0070615 - nucleosome-dependent ATPase activity [Evidence IDA] [PMID 10811623]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0000182 - rDNA binding [Evidence IDA] [PMID 17259992]; GO_process: GO:0043044 - ATP-dependent chromatin remodeling [Evidence IDA] [PMID 10811623]; GO_process: GO:0016568 - chromatin modification [Evidence IEA]; GO_process: GO:0071894 - histone H2B conserved C-terminal lysine ubiquitination [Evidence IMP] [PMID 22549955]; GO_process: GO:2000104 - negative regulation of DNA-dependent DNA replication [Evidence IGI] [PMID 18245327]; GO_process: GO:0071441 - negative regulation of histone H3-K14 acetylation [Evidence IMP] [PMID 19948887]; GO_process: GO:2000616 - negative regulation of histone H3-K9 acetylation [Evidence IMP] [PMID 19948887]; GO_process: GO:1900050 - negative regulation of histone exchange [Evidence IMP] [PMID 22922743]; GO_process: GO:0042766 - nucleosome mobilization [Evidence IDA] [PMID 16606615]; GO_process: GO:0016584 - nucleosome positioning [Evidence IGI] [PMID 16468993]; GO_process: GO:0016584 - nucleosome positioning [Evidence IDA] [PMID 17949749]; GO_process: GO:1902275 - regulation of chromatin organization [Evidence IMP] [PMID 22922743]; GO_process: GO:0034401 - regulation of transcription by chromatin organization [Evidence IGI] [PMID 10811623]; GO_process: GO:0034401 - regulation of transcription by chromatin organization [Evidence IMP] [PMID 16468993]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0001178 - regulation of transcriptional start site selection at RNA polymerase II promoter [Evidence IGI] [PMID 19948887]; GO_process: GO:0006363 - termination of RNA polymerase I transcription [Evidence IGI] [PMID 17259992]; GO_process: GO:0006369 - termination of RNA polymerase II transcription [Evidence IGI,IMP] [PMID 12504018]; GO_process: GO:0006368 - transcription elongation from RNA polymerase II promoter [Evidence IGI,IPI] [PMID 12682017]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; chromatin-remodeling ATPase CHD1 1434689 CHD1 30037280 CHD1 Sugiyamaella lignohabitans chromatin-remodeling ATPase CHD1 XP_018736597.1 1431000 R 796027 CDS AWJ20_5079 30037281 complement(1434937..1435635) D 1 NC_031673.1 chromodomain-helicase-DNA-binding protein 1 1435635 30037281 AWJ20_5079 Sugiyamaella lignohabitans chromodomain-helicase-DNA-binding protein 1 XP_018736598.1 1434937 R 796027 CDS AWJ20_5080 30037283 complement(1438802..1442125) D 1 NC_031673.1 Peptidase that deconjugates Smt3/SUMO-1 peptides from proteins; plays a role in chromosome cohesion at centromeric regions and recovery from checkpoint arrest induced by DNA damage or DNA replication defects; potential Cdc28p substrate; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 10713161]; GO_function: GO:0016929 - SUMO-specific protease activity [Evidence IDA,IMP] [PMID 10713161]; GO_function: GO:0008234 - cysteine-type peptidase activity [Evidence IEA,IEA]; GO_function: GO:0008234 - cysteine-type peptidase activity [Evidence ISS] [PMID 10094048]; GO_function: GO:0008234 - cysteine-type peptidase activity [Evidence IDA] [PMID 10713161]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_process: GO:0030261 - chromosome condensation [Evidence IMP] [PMID 11333221]; GO_process: GO:0007094 - mitotic spindle assembly checkpoint [Evidence IGI,IMP] [PMID 10713162]; GO_process: GO:0006276 - plasmid maintenance [Evidence IMP] [PMID 10713161]; GO_process: GO:0006276 - plasmid maintenance [Evidence IMP] [PMID 11333221]; GO_process: GO:0016926 - protein desumoylation [Evidence IDA,IMP] [PMID 10713161]; GO_process: GO:0006508 - proteolysis [Evidence IEA,IEA]; Ulp2p 1442125 ULP2 30037283 ULP2 Sugiyamaella lignohabitans Ulp2p XP_018736599.1 1438802 R 796027 CDS AWJ20_5081 30037284 1446063..1447406 D 1 NC_031673.1 Essential component of the TIM23 complex; tethers the import motor and regulatory factors (PAM complex) to the translocation channel (Tim23p-Tim17p core complex); TIM23 complex is short for the translocase of the inner mitochondrial membrane; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0001405 - presequence translocase-associated import motor [Evidence IDA] [PMID 14517234]; GO_component: GO:0001405 - presequence translocase-associated import motor [Evidence IDA] [PMID 14638855]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0015450 - P-P-bond-hydrolysis-driven protein transmembrane transporter activity [Evidence IEA]; GO_function: GO:0051087 - chaperone binding [Evidence IMP] [PMID 11344168]; GO_function: GO:0051087 - chaperone binding [Evidence IPI] [PMID 7809127]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0030674 - protein binding, bridging [Evidence IMP] [PMID 10824101]; GO_function: GO:0030674 - protein binding, bridging [Evidence IMP] [PMID 11344168]; GO_process: GO:0006886 - intracellular protein transport [Evidence IEA]; GO_process: GO:0030150 - protein import into mitochondrial matrix [Evidence IMP] [PMID 1396562]; GO_process: GO:0030150 - protein import into mitochondrial matrix [Evidence IMP] [PMID 18400944]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Tim44p 1447406 TIM44 30037284 TIM44 Sugiyamaella lignohabitans Tim44p XP_018736600.1 1446063 D 796027 CDS AWJ20_5082 30037285 1448631..1450565 D 1 NC_031673.1 uncharacterized protein 1450565 30037285 AWJ20_5082 Sugiyamaella lignohabitans uncharacterized protein XP_018736601.1 1448631 D 796027 CDS AWJ20_5083 30037286 complement(1450779..1452449) D 1 NC_031673.1 Putative dihydrokaempferol 4-reductase; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0004090 - carbonyl reductase (NADPH) activity [Evidence ISA] [PMID 19577617]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0050662 - coenzyme binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0044237 - cellular metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; carbonyl reductase (NADPH-dependent) 1452449 30037286 AWJ20_5083 Sugiyamaella lignohabitans carbonyl reductase (NADPH-dependent) XP_018736602.1 1450779 R 796027 CDS AWJ20_5084 30037287 complement(1454614..1456773) D 1 NC_031673.1 Rpd3L histone deacetylase complex subunit DEP1 1456773 DEP1 30037287 DEP1 Sugiyamaella lignohabitans Rpd3L histone deacetylase complex subunit DEP1 XP_018736603.1 1454614 R 796027 CDS AWJ20_5085 30037288 complement(1462696..1464084) D 1 NC_031673.1 tRNA:pseudouridine synthase; introduces pseudouridines at position 38 or 39 in tRNA, important for maintenance of translation efficiency and normal cell growth, localizes to both the nucleus and cytoplasm; non-essential for viability; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 9430663]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9430663]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0016853 - isomerase activity [Evidence IEA]; GO_function: GO:0009982 - pseudouridine synthase activity [Evidence IEA]; GO_function: GO:0009982 - pseudouridine synthase activity [Evidence IDA,IMP] [PMID 9430663]; GO_process: GO:0009451 - RNA modification [Evidence IEA]; GO_process: GO:0001522 - pseudouridine synthesis [Evidence IEA]; GO_process: GO:0008033 - tRNA processing [Evidence IEA]; GO_process: GO:0031119 - tRNA pseudouridine synthesis [Evidence IDA,IMP] [PMID 9430663]; pseudouridine synthase DEG1 1464084 DEG1 30037288 DEG1 Sugiyamaella lignohabitans pseudouridine synthase DEG1 XP_018736604.1 1462696 R 796027 CDS AWJ20_5086 30037289 1464424..1466280 D 1 NC_031673.1 Putative ATP-dependent RNA helicase; nucleolar protein required for synthesis of 60S ribosomal subunits at a late step in the pathway; sediments with 66S pre-ribosomes in sucrose gradients; GO_component: GO:0030686 - 90S preribosome [Evidence IDA,IPI] [PMID 21825077]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 9769101]; GO_component: GO:0005654 - nucleoplasm [Evidence IDA] [PMID 9769101]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 22735702]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004004 - ATP-dependent RNA helicase activity [Evidence ISS] [PMID 2408148]; GO_function: GO:0008026 - ATP-dependent helicase activity [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0004386 - helicase activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:1902626 - assembly of large subunit precursor of preribosome [Evidence IMP] [PMID 22735702]; GO_process: GO:0000470 - maturation of LSU-rRNA [Evidence IMP] [PMID 2408148]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0000027 - ribosomal large subunit assembly [Evidence IMP] [PMID 21825077]; GO_process: GO:0000027 - ribosomal large subunit assembly [Evidence IMP] [PMID 2408148]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; Spb4p 1466280 SPB4 30037289 SPB4 Sugiyamaella lignohabitans Spb4p XP_018736605.1 1464424 D 796027 CDS AWJ20_5087 30037290 complement(1466507..1468246) D 1 NC_031673.1 Protein that activates Rub1p (NEDD8) before neddylation; acts together with Uba3p; may play a role in protein degradation; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0019781 - NEDD8 activating enzyme activity [Evidence IMP,ISS] [PMID 9531531]; GO_function: GO:0019781 - NEDD8 activating enzyme activity [Evidence IDA,ISS] [PMID 9545234]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0045116 - protein neddylation [Evidence IEA]; GO_process: GO:0045116 - protein neddylation [Evidence ISS] [PMID 9531531]; GO_process: GO:0045116 - protein neddylation [Evidence IDA,IMP,ISS] [PMID 9545234]; Ula1p 1468246 ULA1 30037290 ULA1 Sugiyamaella lignohabitans Ula1p XP_018736606.1 1466507 R 796027 CDS AWJ20_5088 30037291 1469864..1470355 D 1 NC_031673.1 Molecular chaperone involved in protein folding in ER; mutation causes defects in cell wall synthesis and lysis of autophagic bodies, suppresses tor2 mutations, and is synthetically lethal with kar2-1 and with rot2 mutations; involved in N-linked glycosylation and O-mannosylation; transmembrane helix Ser250 is essential for Rot1p to interact with other membrane components and exert its functional role, avoiding exposure of Ser H-bonding group at lipid-exposed surface; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 14562095]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IDA] [PMID 16567426]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0051082 - unfolded protein binding [Evidence IDA,IMP] [PMID 18508919]; GO_process: GO:0006458 - 'de novo' protein folding [Evidence IMP,IPI] [PMID 18508919]; GO_process: GO:0007118 - budding cell apical bud growth [Evidence IGI,IMP] [PMID 17606994]; GO_process: GO:0030968 - endoplasmic reticulum unfolded protein response [Evidence IGI] [PMID 16874095]; GO_process: GO:0030950 - establishment or maintenance of actin cytoskeleton polarity [Evidence IMP] [PMID 17606994]; GO_process: GO:0009272 - fungal-type cell wall biogenesis [Evidence IMP] [PMID 9545237]; GO_process: GO:0006487 - protein N-linked glycosylation [Evidence IGI,IPI] [PMID 22492205]; GO_process: GO:0035269 - protein O-linked mannosylation [Evidence IGI] [PMID 22492205]; GO_process: GO:0006457 - protein folding [Evidence IGI] [PMID 16874095]; Rot1p 1470355 ROT1 30037291 ROT1 Sugiyamaella lignohabitans Rot1p XP_018736607.1 1469864 D 796027 CDS AWJ20_5089 30037292 complement(1470600..1473638) D 1 NC_031673.1 TFIID subunit (150 kDa); involved in RNA polymerase II transcription initiation; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005669 - transcription factor TFIID complex [Evidence IDA] [PMID 10788514]; GO_component: GO:0005669 - transcription factor TFIID complex [Evidence IDA] [PMID 15448131]; GO_function: GO:0001075 - RNA polymerase II core promoter sequence-specific DNA binding transcription factor activity involved in preinitiation complex assembly [Evidence IC] [PMID 15448131]; GO_function: GO:0003682 - chromatin binding [Evidence IDA] [PMID 10818000]; GO_function: GO:0003682 - chromatin binding [Evidence IDA] [PMID 12600943]; GO_process: GO:0051123 - RNA polymerase II transcriptional preinitiation complex assembly [Evidence IC] [PMID 10788514]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IDA] [PMID 12138208]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IDA] [PMID 15448131]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Taf2p 1473638 TAF2 30037292 TAF2 Sugiyamaella lignohabitans Taf2p XP_018736608.1 1470600 R 796027 CDS AWJ20_5090 30037294 complement(1474109..1475146) D 1 NC_031673.1 TFIID subunit (150 kDa); involved in RNA polymerase II transcription initiation; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005669 - transcription factor TFIID complex [Evidence IDA] [PMID 10788514]; GO_component: GO:0005669 - transcription factor TFIID complex [Evidence IDA] [PMID 15448131]; GO_function: GO:0001075 - RNA polymerase II core promoter sequence-specific DNA binding transcription factor activity involved in preinitiation complex assembly [Evidence IC] [PMID 15448131]; GO_function: GO:0003682 - chromatin binding [Evidence IDA] [PMID 10818000]; GO_function: GO:0003682 - chromatin binding [Evidence IDA] [PMID 12600943]; GO_process: GO:0051123 - RNA polymerase II transcriptional preinitiation complex assembly [Evidence IC] [PMID 10788514]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IDA] [PMID 12138208]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IDA] [PMID 15448131]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Taf2p 1475146 TAF2 30037294 TAF2 Sugiyamaella lignohabitans Taf2p XP_018736609.1 1474109 R 796027 CDS AWJ20_5091 30037295 1476337..1476930 D 1 NC_031673.1 Protein required for the ATP-dependent transport of arginine; vacuolar membrane protein; involved in the ATP-dependent transport of arginine into the vacuole and possibly in balancing ion homeostasis; homolog of human CLN3 involved in Batten disease (juvenile onset neuronal ceroid lipofuscinosis); GO_component: GO:0000324 - fungal-type vacuole [Evidence IDA] [PMID 10319861]; GO_component: GO:0000324 - fungal-type vacuole [Evidence IDA] [PMID 9753630]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IBA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0031301 - integral component of organelle membrane [Evidence IBA]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006865 - amino acid transport [Evidence IEA]; GO_process: GO:0015809 - arginine transport [Evidence IMP] [PMID 14660799]; GO_process: GO:0015819 - lysine transport [Evidence IMP] [PMID 14660799]; GO_process: GO:0051453 - regulation of intracellular pH [Evidence IMP] [PMID 10191121]; GO_process: GO:0051453 - regulation of intracellular pH [Evidence IMP] [PMID 10319861]; GO_process: GO:0051453 - regulation of intracellular pH [Evidence IMP] [PMID 16423829]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0007034 - vacuolar transport [Evidence IBA]; GO_process: GO:0007033 - vacuole organization [Evidence IBA]; Yhc3p 1476930 YHC3 30037295 YHC3 Sugiyamaella lignohabitans Yhc3p XP_018736610.1 1476337 D 796027 CDS AWJ20_5092 30037296 complement(1477993..1479015) D 1 NC_031673.1 Nucleolar protein required for rRNA synthesis and ribosomal assembly; required for the synthesis of 18S rRNA and for the assembly of 40S ribosomal subunit; essential gene; GO_component: GO:0030686 - 90S preribosome [Evidence IDA] [PMID 12150911]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 11027267]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 12150911]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0032040 - small-subunit processome [Evidence IDA] [PMID 15590835]; GO_function: GO:0003723 - RNA binding [Evidence IEA,IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0000447 - endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 11027267]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0006364 - rRNA processing [Evidence IMP] [PMID 11996121]; GO_process: GO:0042274 - ribosomal small subunit biogenesis [Evidence IMP] [PMID 12150911]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; Krr1p 1479015 KRR1 30037296 KRR1 Sugiyamaella lignohabitans Krr1p XP_018736611.1 1477993 R 796027 CDS AWJ20_5093 30037297 complement(1479953..1482139) D 1 NC_031673.1 uncharacterized protein 1482139 30037297 AWJ20_5093 Sugiyamaella lignohabitans uncharacterized protein XP_018736612.1 1479953 R 796027 CDS AWJ20_5094 30037298 complement(1482466..1484550) D 1 NC_031673.1 Bifunctional triacylglycerol lipase and LPA acyltransferase; lipid particle-localized triacylglycerol (TAG) lipase involved in triacylglycerol mobilization; catalyzes acylation of lysophosphatidic acid (LPA); potential Cdc28p substrate; TGL5 has a paralog, TGL4, that arose from the whole genome duplication; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0005811 - lipid particle [Evidence IEA,IEA]; GO_component: GO:0005811 - lipid particle [Evidence IDA] [PMID 14562095]; GO_component: GO:0005811 - lipid particle [Evidence IDA] [PMID 16135509]; GO_component: GO:0005811 - lipid particle [Evidence IDA] [PMID 24868093]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0042171 - lysophosphatidic acid acyltransferase activity [Evidence IDA] [PMID 20016004]; GO_function: GO:0004806 - triglyceride lipase activity [Evidence IEA]; GO_function: GO:0004806 - triglyceride lipase activity [Evidence IDA,IMP] [PMID 16135509]; GO_process: GO:0016042 - lipid catabolic process [Evidence IEA]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA,IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0030435 - sporulation resulting in formation of a cellular spore [Evidence IEA]; GO_process: GO:0006642 - triglyceride mobilization [Evidence IDA,IMP] [PMID 16135509]; Tgl5p 1484550 TGL5 30037298 TGL5 Sugiyamaella lignohabitans Tgl5p XP_018736613.1 1482466 R 796027 CDS AWJ20_5095 30037299 1491826..1493994 D 1 NC_031673.1 Putative positive regulator of mannosylphosphate transferase Mnn6p; involved in mannosylphosphorylation of N-linked oligosaccharides; expression increases in late-logarithmic and stationary growth phases; coding sequence contains length polymorphisms in different strains; MNN4 has a paralog, YJR061W, that arose from the whole genome duplication; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0016020 - membrane [Evidence ISS] [PMID 9023541]; GO_function: GO:0008047 - enzyme activator activity [Evidence IMP] [PMID 9459307]; GO_process: GO:0071470 - cellular response to osmotic stress [Evidence IEP] [PMID 9459307]; GO_process: GO:0006487 - protein N-linked glycosylation [Evidence IMP] [PMID 9023541]; GO_process: GO:0006493 - protein O-linked glycosylation [Evidence IMP] [PMID 9813355]; Mnn4p 1493994 MNN4 30037299 MNN4 Sugiyamaella lignohabitans Mnn4p XP_018736614.1 1491826 D 796027 CDS AWJ20_5096 30037300 complement(1495890..1496624) D 1 NC_031673.1 Protein with sequence similarity to acireductone synthases; involved in methionine salvage; found in both the cytoplasm and nucleus; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0043715 - 2,3-diketo-5-methylthiopentyl-1-phosphate enolase activity [Evidence IEA]; GO_function: GO:0043716 - 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase activity [Evidence IEA]; GO_function: GO:0043874 - acireductone synthase activity [Evidence IEA,IEA]; GO_function: GO:0043874 - acireductone synthase activity [Evidence ISS] [PMID 15102328]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0000287 - magnesium ion binding [Evidence IEA,IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_process: GO:0019284 - L-methionine biosynthetic process from S-adenosylmethionine [Evidence IEA]; GO_process: GO:0019509 - L-methionine salvage from methylthioadenosine [Evidence IEA,IEA]; GO_process: GO:0019509 - L-methionine salvage from methylthioadenosine [Evidence IMP] [PMID 18625006]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0016311 - dephosphorylation [Evidence IEA,IEA,IEA]; GO_process: GO:0009086 - methionine biosynthetic process [Evidence IEA]; putative acireductone synthase UTR4 1496624 UTR4 30037300 UTR4 Sugiyamaella lignohabitans putative acireductone synthase UTR4 XP_018736615.1 1495890 R 796027 CDS AWJ20_5097 30037301 1503029..1504867 D 1 NC_031673.1 uncharacterized protein 1504867 30037301 AWJ20_5097 Sugiyamaella lignohabitans uncharacterized protein XP_018736616.1 1503029 D 796027 CDS AWJ20_5098 30037302 1505353..1507269 D 1 NC_031673.1 UV-damaged DNA-binding protein RAD7 1507269 RAD7 30037302 RAD7 Sugiyamaella lignohabitans UV-damaged DNA-binding protein RAD7 XP_018736617.1 1505353 D 796027 CDS AWJ20_5099 30037303 complement(1508235..1510004) D 1 NC_031673.1 stress-responsive transcription factor HSF1 1510004 HSF1 30037303 HSF1 Sugiyamaella lignohabitans stress-responsive transcription factor HSF1 XP_018736618.1 1508235 R 796027 CDS AWJ20_5100 30037306 complement(join(1517875..1518622,1518969..1519003)) D 1 NC_031673.1 Alpha 4 subunit of the 20S proteasome; may replace alpha 3 subunit (Pre9p) under stress conditions to create a more active proteasomal isoform; GFP-fusion protein relocates from cytosol to the mitochondrial surface upon oxidative stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16806052]; GO_component: GO:0042175 - nuclear outer membrane-endoplasmic reticulum membrane network [Evidence IDA] [PMID 9799224]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 18504300]; GO_component: GO:0000502 - proteasome complex [Evidence IEA]; GO_component: GO:0005839 - proteasome core complex [Evidence IEA]; GO_component: GO:0019773 - proteasome core complex, alpha-subunit complex [Evidence IEA]; GO_component: GO:0019773 - proteasome core complex, alpha-subunit complex [Evidence IDA] [PMID 9087403]; GO_component: GO:0034515 - proteasome storage granule [Evidence IDA] [PMID 18504300]; GO_function: GO:0004175 - endopeptidase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_function: GO:0004298 - threonine-type endopeptidase activity [Evidence IEA,IEA]; GO_process: GO:0010499 - proteasomal ubiquitin-independent protein catabolic process [Evidence IDA] [PMID 19162040]; GO_process: GO:0043161 - proteasome-mediated ubiquitin-dependent protein catabolic process [Evidence IDA] [PMID 11545745]; GO_process: GO:0043161 - proteasome-mediated ubiquitin-dependent protein catabolic process [Evidence IDA] [PMID 19029916]; GO_process: GO:0006508 - proteolysis [Evidence IEA]; GO_process: GO:0051603 - proteolysis involved in cellular protein catabolic process [Evidence IEA]; GO_process: GO:0006511 - ubiquitin-dependent protein catabolic process [Evidence IEA]; proteasome core particle subunit alpha 4 1519003 PRE6 30037306 PRE6 Sugiyamaella lignohabitans proteasome core particle subunit alpha 4 XP_018736619.1 1517875 R 796027 CDS AWJ20_5101 30037307 1521156..1523582 D 1 NC_031673.1 Subunit (90 kDa) of TFIID and SAGA complexes; involved in RNA polymerase II transcription initiation and in chromatin modification; GO_component: GO:0000124 - SAGA complex [Evidence IDA] [PMID 9674426]; GO_component: GO:0046695 - SLIK (SAGA-like) complex [Evidence IDA] [PMID 12446794]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005669 - transcription factor TFIID complex [Evidence IDA] [PMID 10788514]; GO_component: GO:0005669 - transcription factor TFIID complex [Evidence IDA] [PMID 15448131]; GO_function: GO:0001075 - RNA polymerase II core promoter sequence-specific DNA binding transcription factor activity involved in preinitiation complex assembly [Evidence IC] [PMID 15448131]; GO_function: GO:0003682 - chromatin binding [Evidence IDA] [PMID 12600943]; GO_function: GO:0032947 - protein complex scaffold [Evidence IMP] [PMID 11585915]; GO_function: GO:0043130 - ubiquitin binding [Evidence IDA] [PMID 21070969]; GO_process: GO:0051123 - RNA polymerase II transcriptional preinitiation complex assembly [Evidence IC] [PMID 10788514]; GO_process: GO:0016568 - chromatin modification [Evidence IDA] [PMID 9674426]; GO_process: GO:0016573 - histone acetylation [Evidence IDA] [PMID 9674426]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA,IEA]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IDA] [PMID 12138208]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IDA] [PMID 15448131]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Taf5p 1523582 TAF5 30037307 TAF5 Sugiyamaella lignohabitans Taf5p XP_018736620.1 1521156 D 796027 CDS AWJ20_5102 30037308 complement(1527317..1527970) D 1 NC_031673.1 High-affinity copper transporter of the plasma membrane; acts as a trimer; gene is disrupted by a Ty2 transposon insertion in many laboratory strains of S. cerevisiae; GO_component: GO:0031410 - cytoplasmic vesicle [Evidence IEA]; GO_component: GO:0030659 - cytoplasmic vesicle membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0005887 - integral component of plasma membrane [Evidence IDA] [PMID 10924521]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0005375 - copper ion transmembrane transporter activity [Evidence IEA]; GO_function: GO:0015088 - copper uptake transmembrane transporter activity [Evidence IDA] [PMID 10924521]; GO_process: GO:0015677 - copper ion import [Evidence IDA] [PMID 10924521]; GO_process: GO:0035434 - copper ion transmembrane transport [Evidence IEA]; GO_process: GO:0006825 - copper ion transport [Evidence IEA]; GO_process: GO:0006811 - ion transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Ctr3p 1527970 CTR3 30037308 CTR3 Sugiyamaella lignohabitans Ctr3p XP_018736621.1 1527317 R 796027 CDS AWJ20_5103 30037309 1532485..1536432 D 1 NC_031673.1 mRNA-binding translational repressor SSD1 1536432 SSD1 30037309 SSD1 Sugiyamaella lignohabitans mRNA-binding translational repressor SSD1 XP_018736622.1 1532485 D 796027 CDS AWJ20_5104 30037310 complement(1536771..1537838) D 1 NC_031673.1 uncharacterized protein 1537838 30037310 AWJ20_5104 Sugiyamaella lignohabitans uncharacterized protein XP_018736623.1 1536771 R 796027 CDS AWJ20_5105 30037311 1541544..1543007 D 1 NC_031673.1 Non-essential regulatory subunit B of protein phosphatase 2A (PP2A); localization to cytoplasm requires Zds1p and Zds2p and promotes mitotic entry; localization to nucleus prevents mitotic exit; required for correct nuclear division and chromosome segregation in meiosis; maintains nucleolar sequestration of Cdc14p during early meiosis; limits formation of PP2A-Rts1p holocomplexes to ensure timely dissolution of sister chromosome cohesion; homolog of mammalian B55; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 12388751]; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 12388751]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 21536748]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 12388751]; GO_component: GO:0000159 - protein phosphatase type 2A complex [Evidence IEA]; GO_function: GO:0008601 - protein phosphatase type 2A regulator activity [Evidence IEA]; GO_function: GO:0008601 - protein phosphatase type 2A regulator activity [Evidence ISA] [PMID 1656238]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0000078 - cytokinesis after mitosis checkpoint [Evidence IGI] [PMID 20980617]; GO_process: GO:0001100 - negative regulation of exit from mitosis [Evidence IMP] [PMID 16314395]; GO_process: GO:0010971 - positive regulation of G2/M transition of mitotic cell cycle [Evidence IMP] [PMID 21536748]; GO_process: GO:0061586 - positive regulation of transcription by transcription factor localization [Evidence IMP] [PMID 23275436]; GO_process: GO:0006470 - protein dephosphorylation [Evidence IDA] [PMID 22581371]; GO_process: GO:0006470 - protein dephosphorylation [Evidence IMP] [PMID 22814605]; GO_process: GO:0034504 - protein localization to nucleus [Evidence IMP] [PMID 23275436]; GO_process: GO:0050790 - regulation of catalytic activity [Evidence IEA]; GO_process: GO:0007165 - signal transduction [Evidence IEA]; protein phosphatase 2A regulatory subunit CDC55 1543007 CDC55 30037311 CDC55 Sugiyamaella lignohabitans protein phosphatase 2A regulatory subunit CDC55 XP_018736624.1 1541544 D 796027 CDS AWJ20_5106 30037312 complement(1544028..1544444) D 1 NC_031673.1 Subunit VIa of cytochrome c oxidase; present in a subclass of cytochrome c oxidase complexes that may have a role in mimimizing generation of reactive oxygen species; not essential for cytochrome c oxidase activity but may modulate activity in response to ATP; required for assembly of Rcf2p into cytochrome c oxidase - cytochrome bc1 supercomplexes; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA,IEA]; GO_component: GO:0005751 - mitochondrial respiratory chain complex IV [Evidence IEA]; GO_component: GO:0005751 - mitochondrial respiratory chain complex IV [Evidence IPI] [PMID 1331058]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0004129 - cytochrome-c oxidase activity [Evidence IEA,IEA]; GO_function: GO:0004129 - cytochrome-c oxidase activity [Evidence IDA] [PMID 1331058]; GO_function: GO:0004129 - cytochrome-c oxidase activity [Evidence IDA] [PMID 7851399]; GO_function: GO:0030234 - enzyme regulator activity [Evidence IDA] [PMID 10429195]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_process: GO:0009060 - aerobic respiration [Evidence IMP] [PMID 8395517]; GO_process: GO:1902600 - hydrogen ion transmembrane transport [Evidence IEA,IEA]; GO_process: GO:0097250 - mitochondrial respiratory chain supercomplex assembly [Evidence IMP] [PMID 22342701]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; GO_process: GO:0006119 - oxidative phosphorylation [Evidence IEA]; cytochrome c oxidase subunit VIa 1544444 COX13 30037312 COX13 Sugiyamaella lignohabitans cytochrome c oxidase subunit VIa XP_018736625.1 1544028 R 796027 CDS AWJ20_5107 30037313 1548638..1549984 D 1 NC_031673.1 Alpha subunit of the F1 sector of mitochondrial F1F0 ATP synthase; which is a large, evolutionarily conserved enzyme complex required for ATP synthesis; F1 translationally regulates ATP6 and ATP8 expression to achieve a balanced output of ATP synthase genes encoded in nucleus and mitochondria; phosphorylated; N-terminally propionylated in vivo; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0042645 - mitochondrial nucleoid [Evidence IDA] [PMID 10869431]; GO_component: GO:0005754 - mitochondrial proton-transporting ATP synthase, catalytic core [Evidence IDA] [PMID 17082766]; GO_component: GO:0005754 - mitochondrial proton-transporting ATP synthase, catalytic core [Evidence IMP,ISS] [PMID 2876995]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 11502169]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IPI] [PMID 16962558]; GO_component: GO:0045261 - proton-transporting ATP synthase complex, catalytic core F(1) [Evidence IEA,IEA]; GO_component: GO:0045261 - proton-transporting ATP synthase complex, catalytic core F(1) [Evidence IDA] [PMID 15294286]; GO_component: GO:0033178 - proton-transporting two-sector ATPase complex, catalytic domain [Evidence IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016887 - ATPase activity [Evidence IDA] [PMID 15294286]; GO_function: GO:0016887 - ATPase activity [Evidence IDA] [PMID 18722382]; GO_function: GO:0016820 - hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0046933 - proton-transporting ATP synthase activity, rotational mechanism [Evidence IEA]; GO_function: GO:0046933 - proton-transporting ATP synthase activity, rotational mechanism [Evidence IMP] [PMID 1827117]; GO_function: GO:0046933 - proton-transporting ATP synthase activity, rotational mechanism [Evidence IDA] [PMID 20691145]; GO_function: GO:0046933 - proton-transporting ATP synthase activity, rotational mechanism [Evidence IMP,ISS] [PMID 2876995]; GO_function: GO:0046961 - proton-transporting ATPase activity, rotational mechanism [Evidence IEA]; GO_process: GO:0006754 - ATP biosynthetic process [Evidence IEA]; GO_process: GO:0015991 - ATP hydrolysis coupled proton transport [Evidence IEA]; GO_process: GO:0046034 - ATP metabolic process [Evidence IEA]; GO_process: GO:0015986 - ATP synthesis coupled proton transport [Evidence IEA]; GO_process: GO:0015986 - ATP synthesis coupled proton transport [Evidence IDA] [PMID 20691145]; GO_process: GO:0015986 - ATP synthesis coupled proton transport [Evidence IMP,ISS] [PMID 2876995]; GO_process: GO:0006811 - ion transport [Evidence IEA]; GO_process: GO:0015992 - proton transport [Evidence IEA,IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; F1F0 ATP synthase subunit alpha 1549984 ATP1 30037313 ATP1 Sugiyamaella lignohabitans F1F0 ATP synthase subunit alpha XP_018736626.1 1548638 D 796027 CDS AWJ20_5109 30037315 complement(1554163..1555599) D 1 NC_031673.1 uncharacterized protein 1555599 30037315 AWJ20_5109 Sugiyamaella lignohabitans uncharacterized protein XP_018736627.1 1554163 R 796027 CDS AWJ20_5110 30037317 1557342..1558847 D 1 NC_031673.1 RNA polymerase III subunit C53; GO_component: GO:0005666 - DNA-directed RNA polymerase III complex [Evidence IEA]; GO_component: GO:0005666 - DNA-directed RNA polymerase III complex [Evidence IDA] [PMID 10611227]; GO_component: GO:0005666 - DNA-directed RNA polymerase III complex [Evidence IDA] [PMID 3905793]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0003899 - DNA-directed RNA polymerase activity [Evidence IEA,IEA]; GO_function: GO:0001056 - RNA polymerase III activity [Evidence IDA] [PMID 3905793]; GO_process: GO:0042797 - tRNA transcription from RNA polymerase III promoter [Evidence IMP] [PMID 1406624]; GO_process: GO:0042797 - tRNA transcription from RNA polymerase III promoter [Evidence IDA] [PMID 3905793]; GO_process: GO:0006383 - transcription from RNA polymerase III promoter [Evidence IEA]; Rpc53p 1558847 RPC53 30037317 RPC53 Sugiyamaella lignohabitans Rpc53p XP_018736628.1 1557342 D 796027 CDS AWJ20_5111 30037318 complement(1559801..1561648) D 1 NC_031673.1 uncharacterized protein 1561648 30037318 AWJ20_5111 Sugiyamaella lignohabitans uncharacterized protein XP_018736629.1 1559801 R 796027 CDS AWJ20_5112 30037319 1565870..1566709 D 1 NC_031673.1 1-acyl-sn-glycerol-3-phosphate acyltransferase; catalyzes the acylation of lysophosphatidic acid to form phosphatidic acid, a key intermediate in lipid metabolism; enzymatic activity detected in lipid particles and microsomes; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0005811 - lipid particle [Evidence IDA] [PMID 10515935]; GO_component: GO:0005811 - lipid particle [Evidence IDA] [PMID 24868093]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA,IEA]; GO_function: GO:0003841 - 1-acylglycerol-3-phosphate O-acyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0003841 - 1-acylglycerol-3-phosphate O-acyltransferase activity [Evidence IDA] [PMID 9212466]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016746 - transferase activity, transferring acyl groups [Evidence IEA,IEA]; GO_process: GO:0016024 - CDP-diacylglycerol biosynthetic process [Evidence IEA]; GO_process: GO:0046474 - glycerophospholipid biosynthetic process [Evidence IGI] [PMID 17675291]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0008654 - phospholipid biosynthetic process [Evidence IEA,IEA]; 1-acylglycerol-3-phosphate O-acyltransferase SLC1 1566709 SLC1 30037319 SLC1 Sugiyamaella lignohabitans 1-acylglycerol-3-phosphate O-acyltransferase SLC1 XP_018736630.1 1565870 D 796027 CDS AWJ20_5113 30037320 complement(1567364..1567903) D 1 NC_031673.1 Nicotinamide riboside kinase; catalyzes the phosphorylation of nicotinamide riboside and nicotinic acid riboside in salvage pathways for NAD+ biosynthesis; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0034317 - nicotinic acid riboside kinase activity [Evidence ISS] [PMID 17914902]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0050262 - ribosylnicotinamide kinase activity [Evidence IEA,IEA]; GO_function: GO:0050262 - ribosylnicotinamide kinase activity [Evidence IDA] [PMID 15137942]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0034356 - NAD biosynthesis via nicotinamide riboside salvage pathway [Evidence IGI] [PMID 15137942]; GO_process: GO:0009435 - NAD biosynthetic process [Evidence IEA]; GO_process: GO:0009435 - NAD biosynthetic process [Evidence IGI] [PMID 17914902]; GO_process: GO:0019359 - nicotinamide nucleotide biosynthetic process [Evidence IEA]; GO_process: GO:0046495 - nicotinamide riboside metabolic process [Evidence IDA,IGI] [PMID 15137942]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; GO_process: GO:0019363 - pyridine nucleotide biosynthetic process [Evidence IEA]; ribosylnicotinamide kinase 1567903 NRK1 30037320 NRK1 Sugiyamaella lignohabitans ribosylnicotinamide kinase XP_018736631.1 1567364 R 796027 CDS AWJ20_5114 30037321 1570764..1573742 D 1 NC_031673.1 ssRNA exonuclease RAT1 1573742 RAT1 30037321 RAT1 Sugiyamaella lignohabitans ssRNA exonuclease RAT1 XP_018736632.1 1570764 D 796027 CDS AWJ20_5115 30037322 1575627..1578083 D 1 NC_031673.1 Protein that binds to Fpr1p; confers rapamycin resistance by competing with rapamycin for Fpr1p binding; accumulates in the nucleus upon treatment of cells with rapamycin; has similarity to D. melanogaster shuttle craft and human NFX1; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 10998178]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0003700 - sequence-specific DNA binding transcription factor activity [Evidence IEA]; GO_function: GO:0003700 - sequence-specific DNA binding transcription factor activity [Evidence ISS] [PMID 10998178]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA,IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Fap1p 1578083 FAP1 30037322 FAP1 Sugiyamaella lignohabitans Fap1p XP_018736633.1 1575627 D 796027 CDS AWJ20_5116 30037323 1578838..1579788 D 1 NC_031673.1 Uncharacterized protein R707 1579788 30037323 AWJ20_5116 Sugiyamaella lignohabitans Uncharacterized protein R707 XP_018736634.1 1578838 D 796027 CDS AWJ20_5117 30037324 complement(1579842..1581485) D 1 NC_031673.1 Essential chromatin-associated protein; involved in the initiation of DNA replication; required for the association of the MCM2-7 complex with replication origins; required to stabilize the catalytic subunit of DNA polymerase-alpha; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11168584]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 13680157]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9154825]; GO_component: GO:0005657 - replication fork [Evidence IMP] [PMID 15494305]; GO_component: GO:0031298 - replication fork protection complex [Evidence IDA] [PMID 16531994]; GO_function: GO:0003688 - DNA replication origin binding [Evidence IDA] [PMID 10783164]; GO_function: GO:0003688 - DNA replication origin binding [Evidence IDA] [PMID 15494305]; GO_function: GO:0003690 - double-stranded DNA binding [Evidence IDA] [PMID 19605346]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0005515 - protein binding [Evidence IPI] [PMID 16675460]; GO_function: GO:0003697 - single-stranded DNA binding [Evidence IDA] [PMID 19605346]; GO_process: GO:0006260 - DNA replication [Evidence IEA,IEA]; GO_process: GO:0006270 - DNA replication initiation [Evidence IGI,IMP] [PMID 10783164]; GO_process: GO:0006270 - DNA replication initiation [Evidence IMP,IPI] [PMID 9154825]; GO_process: GO:0006271 - DNA strand elongation involved in DNA replication [Evidence IGI,IMP] [PMID 10783164]; GO_process: GO:0006271 - DNA strand elongation involved in DNA replication [Evidence IGI,IMP] [PMID 11168584]; GO_process: GO:0006271 - DNA strand elongation involved in DNA replication [Evidence IMP] [PMID 9154825]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0030466 - chromatin silencing at silent mating-type cassette [Evidence IMP,IPI] [PMID 16085704]; GO_process: GO:0030466 - chromatin silencing at silent mating-type cassette [Evidence IMP,IPI] [PMID 16328881]; GO_process: GO:0006348 - chromatin silencing at telomere [Evidence IMP,IPI] [PMID 16085704]; GO_process: GO:0000727 - double-strand break repair via break-induced replication [Evidence IMP] [PMID 20516198]; Mcm10p 1581485 MCM10 30037324 MCM10 Sugiyamaella lignohabitans Mcm10p XP_018736635.1 1579842 R 796027 CDS AWJ20_5118 30037325 complement(1582019..1583014) D 1 NC_031673.1 Non-classical phosphatidylinositol transfer protein (PITP); exhibits PI- but not PC-transfer activity; localizes to the peripheral endoplasmic reticulum, cytosol and microsomes; similar to Sec14p; partially relocalizes to the plasma membrane upon DNA replication stress; GO_component: GO:0071944 - cell periphery [Evidence IDA] [PMID 12869188]; GO_component: GO:0032541 - cortical endoplasmic reticulum [Evidence IDA] [PMID 16262726]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 12869188]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 19477927]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0043231 - intracellular membrane-bounded organelle [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_component: GO:0031090 - organelle membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 19477927]; GO_function: GO:0008525 - phosphatidylcholine transporter activity [Evidence IDA] [PMID 10848624]; GO_function: GO:0008526 - phosphatidylinositol transporter activity [Evidence IDA] [PMID 10848624]; GO_process: GO:0043001 - Golgi to plasma membrane protein transport [Evidence IGI] [PMID 10848624]; GO_process: GO:0006869 - lipid transport [Evidence IEA]; GO_process: GO:0046488 - phosphatidylinositol metabolic process [Evidence IGI] [PMID 16262726]; GO_process: GO:0015914 - phospholipid transport [Evidence IDA] [PMID 10848624]; GO_process: GO:2000114 - regulation of establishment of cell polarity [Evidence IGI] [PMID 19477927]; GO_process: GO:0017157 - regulation of exocytosis [Evidence IGI] [PMID 19477927]; GO_process: GO:0006810 - transport [Evidence IEA]; Sfh5p 1583014 SFH5 30037325 SFH5 Sugiyamaella lignohabitans Sfh5p XP_018736636.1 1582019 R 796027 CDS AWJ20_5119 30037326 1583698..1584600 D 1 NC_031673.1 uncharacterized protein 1584600 30037326 AWJ20_5119 Sugiyamaella lignohabitans uncharacterized protein XP_018736637.1 1583698 D 796027 CDS AWJ20_5120 30037328 1586055..1586612 D 1 NC_031673.1 Subunit of the Hap2p/3p/4p/5p CCAAT-binding complex; complex is heme-activated and glucose-repressed; complex is a transcriptional activator and global regulator of respiratory gene expression; contains sequences sufficient for both complex assembly and DNA binding; GO_component: GO:0016602 - CCAAT-binding factor complex [Evidence IEA]; GO_component: GO:0016602 - CCAAT-binding factor complex [Evidence IDA,IPI] [PMID 2832951]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11914276]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0000978 - RNA polymerase II core promoter proximal region sequence-specific DNA binding [Evidence IDA] [PMID 7828851]; GO_function: GO:0001077 - RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription [Evidence IDA] [PMID 2832951]; GO_function: GO:0003700 - sequence-specific DNA binding transcription factor activity [Evidence IEA]; GO_process: GO:0000436 - carbon catabolite activation of transcription from RNA polymerase II promoter [Evidence IDA] [PMID 2832951]; GO_process: GO:0043457 - regulation of cellular respiration [Evidence IMP] [PMID 2182199]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA,IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Hap2p 1586612 HAP2 30037328 HAP2 Sugiyamaella lignohabitans Hap2p XP_018736638.1 1586055 D 796027 CDS AWJ20_5121 30037329 complement(1586919..1589549) D 1 NC_031673.1 Similar to Conserved oligomeric Golgi complex subunit 1; acc. no. Q9VGC3; uncharacterized protein 1589549 30037329 AWJ20_5121 Sugiyamaella lignohabitans uncharacterized protein XP_018736639.1 1586919 R 796027 CDS AWJ20_5122 30037330 1594729..1595850 D 1 NC_031673.1 Bifunctional alcohol dehydrogenase and formaldehyde dehydrogenase; formaldehyde dehydrogenase activity is glutathione-dependent; functions in formaldehyde detoxification and formation of long chain and complex alcohols, regulated by Hog1p-Sko1p; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0051903 - S-(hydroxymethyl)glutathione dehydrogenase activity [Evidence IEA,IEA]; GO_function: GO:0051903 - S-(hydroxymethyl)glutathione dehydrogenase activity [Evidence IDA] [PMID 8483449]; GO_function: GO:0004022 - alcohol dehydrogenase (NAD) activity [Evidence IEA]; GO_function: GO:0004022 - alcohol dehydrogenase (NAD) activity [Evidence IMP] [PMID 12499363]; GO_function: GO:0004022 - alcohol dehydrogenase (NAD) activity [Evidence IDA] [PMID 8483449]; GO_function: GO:0033833 - hydroxymethylfurfural reductase (NADH) activity [Evidence IMP] [PMID 16652391]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0000947 - amino acid catabolic process to alcohol via Ehrlich pathway [Evidence IGI] [PMID 12499363]; GO_process: GO:0006069 - ethanol oxidation [Evidence IEA]; GO_process: GO:0046294 - formaldehyde catabolic process [Evidence IDA] [PMID 8483449]; GO_process: GO:0033859 - furaldehyde metabolic process [Evidence IMP] [PMID 16652391]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; bifunctional alcohol dehydrogenase/S-(hydroxymethyl)glutathione dehydrogenase 1595850 SFA1 30037330 SFA1 Sugiyamaella lignohabitans bifunctional alcohol dehydrogenase/S-(hydroxymethyl)glutathione dehydrogenase XP_018736640.1 1594729 D 796027 CDS AWJ20_5123 30037331 complement(1596021..1596659) D 1 NC_031673.1 Component of cytosolic iron-sulfur protein assembly (CIA) machinery; acts at a late step of Fe-S cluster assembly; forms the CIA targeting complex with Cia1p and Met18p that directs Fe-S cluster incorporation into a subset of proteins involved in methionine biosynthesis, DNA replication and repair, transcription, and telomere maintenance; ortholog of human FAM96B; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14690591]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14690591]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0007059 - chromosome segregation [Evidence IEA]; GO_process: GO:0016226 - iron-sulfur cluster assembly [Evidence IMP] [PMID 22678362]; Cia2p 1596659 CIA2 30037331 CIA2 Sugiyamaella lignohabitans Cia2p XP_018736641.1 1596021 R 796027 CDS AWJ20_5124 30037332 complement(1599614..1602256) D 1 NC_031673.1 Protein involved in DNA replication; component of the Mcm2-7 hexameric helicase complex that binds chromatin as a part of the pre-replicative complex; GO_component: GO:0031261 - DNA replication preinitiation complex [Evidence IPI] [PMID 9554851]; GO_component: GO:0042555 - MCM complex [Evidence IEA]; GO_component: GO:0042555 - MCM complex [Evidence IDA] [PMID 12480933]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 10704410]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005656 - nuclear pre-replicative complex [Evidence IDA] [PMID 16824194]; GO_component: GO:0005656 - nuclear pre-replicative complex [Evidence IDA] [PMID 9335335]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 10704410]; GO_component: GO:0031298 - replication fork protection complex [Evidence IDA] [PMID 16531994]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016887 - ATPase activity [Evidence IDA,IMP] [PMID 12480933]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0003678 - DNA helicase activity [Evidence IEA]; GO_function: GO:0003678 - DNA helicase activity [Evidence IDA] [PMID 18657510]; GO_function: GO:0003688 - DNA replication origin binding [Evidence IDA] [PMID 11756674]; GO_function: GO:0003688 - DNA replication origin binding [Evidence IDA] [PMID 16824194]; GO_function: GO:0003682 - chromatin binding [Evidence IDA] [PMID 9554851]; GO_function: GO:0004386 - helicase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_function: GO:0017116 - single-stranded DNA-dependent ATP-dependent DNA helicase activity [Evidence IDA] [PMID 18657510]; GO_process: GO:0032508 - DNA duplex unwinding [Evidence IEA]; GO_process: GO:0006260 - DNA replication [Evidence IEA,IEA]; GO_process: GO:0006270 - DNA replication initiation [Evidence IEA]; GO_process: GO:0006270 - DNA replication initiation [Evidence IMP] [PMID 12060653]; GO_process: GO:0006271 - DNA strand elongation involved in DNA replication [Evidence IMP] [PMID 10834843]; GO_process: GO:0030466 - chromatin silencing at silent mating-type cassette [Evidence IMP] [PMID 19064704]; GO_process: GO:0006348 - chromatin silencing at telomere [Evidence IMP] [PMID 19064704]; GO_process: GO:0000727 - double-strand break repair via break-induced replication [Evidence IMP] [PMID 20516198]; GO_process: GO:0033260 - nuclear cell cycle DNA replication [Evidence IMP] [PMID 10834843]; GO_process: GO:0006267 - pre-replicative complex assembly involved in nuclear cell cycle DNA replication [Evidence IDA] [PMID 16824194]; GO_process: GO:0006267 - pre-replicative complex assembly involved in nuclear cell cycle DNA replication [Evidence IPI] [PMID 9335335]; MCM DNA helicase complex subunit MCM3 1602256 MCM3 30037332 MCM3 Sugiyamaella lignohabitans MCM DNA helicase complex subunit MCM3 XP_018736642.1 1599614 R 796027 CDS AWJ20_5125 30037333 1603608..1604807 D 1 NC_031673.1 Nitric oxide oxidoreductase; flavohemoglobin involved in nitric oxide detoxification; plays a role in the oxidative and nitrosative stress responses; protein increases in abundance and relocalizes from nucleus to cytoplasmic foci upon DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 15611069]; GO_component: GO:0005759 - mitochondrial matrix [Evidence IDA] [PMID 15611069]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_function: GO:0020037 - heme binding [Evidence IEA]; GO_function: GO:0005506 - iron ion binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0008941 - nitric oxide dioxygenase activity [Evidence IEA]; GO_function: GO:0016966 - nitric oxide reductase activity [Evidence IMP] [PMID 10758168]; GO_function: GO:0016966 - nitric oxide reductase activity [Evidence IMP] [PMID 15611069]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0019825 - oxygen binding [Evidence IEA]; GO_process: GO:0034599 - cellular response to oxidative stress [Evidence IDA] [PMID 8810268]; GO_process: GO:0034599 - cellular response to oxidative stress [Evidence IDA] [PMID 9545281]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0015671 - oxygen transport [Evidence IEA]; GO_process: GO:0009636 - response to toxic substance [Evidence IEA]; Yhb1p 1604807 YHB1 30037333 YHB1 Sugiyamaella lignohabitans Yhb1p XP_018736643.1 1603608 D 796027 CDS AWJ20_5126 30037334 1605283..1607430 D 1 NC_031673.1 Membrane protein involved in the synthesis of GlcNAc-PI; N-acetylglucosaminyl phosphatidylinositol (GlcNAc-PI) is the first intermediate in the synthesis of glycosylphosphatidylinositol (GPI) anchors; human and mouse GPI1p are functional homologs; GO_component: GO:0000506 - glycosylphosphatidylinositol-N- acetylglucosaminyltransferase (GPI-GnT) complex [Evidence IGI,ISA] [PMID 9729469]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 8910381]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_function: GO:0017176 - phosphatidylinositol N-acetylglucosaminyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0017176 - phosphatidylinositol N-acetylglucosaminyltransferase activity [Evidence IC] [PMID 9729469]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA]; GO_process: GO:0006506 - GPI anchor biosynthetic process [Evidence IEA,IEA,IEA]; GO_process: GO:0006506 - GPI anchor biosynthetic process [Evidence IDA,IMP] [PMID 8910381]; Gpi1p 1607430 GPI1 30037334 GPI1 Sugiyamaella lignohabitans Gpi1p XP_018736644.1 1605283 D 796027 CDS AWJ20_5127 30037335 complement(1607694..1608698) D 1 NC_031673.1 Golgi GDP-mannose transporter; regulates Golgi function and glycosylation in Golgi; VRG4 has a paralog, HVG1, that arose from the whole genome duplication; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0005794 - Golgi apparatus [Evidence IDA] [PMID 9395539]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA]; GO_component: GO:0031410 - cytoplasmic vesicle [Evidence IEA]; GO_component: GO:0030659 - cytoplasmic vesicle membrane [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0005458 - GDP-mannose transmembrane transporter activity [Evidence IDA] [PMID 20576760]; GO_function: GO:0005458 - GDP-mannose transmembrane transporter activity [Evidence IMP] [PMID 9395539]; GO_function: GO:0005338 - nucleotide-sugar transmembrane transporter activity [Evidence IEA]; GO_process: GO:0015784 - GDP-mannose transport [Evidence IMP] [PMID 9395539]; GO_process: GO:0008643 - carbohydrate transport [Evidence IEA]; GO_process: GO:1901679 - nucleotide transmembrane transport [Evidence IEA]; GO_process: GO:0015780 - nucleotide-sugar transport [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Vrg4p 1608698 VRG4 30037335 VRG4 Sugiyamaella lignohabitans Vrg4p XP_018736645.1 1607694 R 796027 CDS AWJ20_5128 30037336 1609391..1612786 D 1 NC_031673.1 Mismatch repair protein; forms dimers with Msh2p that mediate repair of insertion or deletion mutations and removal of nonhomologous DNA ends, contains a PCNA (Pol30p) binding motif required for genome stability; GO_component: GO:0032302 - MutSbeta complex [Evidence IPI] [PMID 8805366]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0000228 - nuclear chromosome [Evidence IBA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0032135 - DNA insertion or deletion binding [Evidence IDA] [PMID 8805366]; GO_function: GO:0008094 - DNA-dependent ATPase activity [Evidence IBA]; GO_function: GO:0000403 - Y-form DNA binding [Evidence IDA] [PMID 16781730]; GO_function: GO:0003684 - damaged DNA binding [Evidence IBA]; GO_function: GO:0000406 - double-strand/single-strand DNA junction binding [Evidence IDA] [PMID 16781730]; GO_function: GO:0000404 - heteroduplex DNA loop binding [Evidence IDA] [PMID 16781730]; GO_function: GO:0030983 - mismatched DNA binding [Evidence IEA]; GO_function: GO:0030983 - mismatched DNA binding [Evidence IDA] [PMID 17636021]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006310 - DNA recombination [Evidence IMP] [PMID 15920474]; GO_process: GO:0006281 - DNA repair [Evidence IEA]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0043570 - maintenance of DNA repeat elements [Evidence IBA]; GO_process: GO:0000710 - meiotic mismatch repair [Evidence IMP] [PMID 16702432]; GO_process: GO:0006298 - mismatch repair [Evidence IEA]; GO_process: GO:0006298 - mismatch repair [Evidence IMP] [PMID 8510668]; GO_process: GO:0006298 - mismatch repair [Evidence IMP] [PMID 9520271]; GO_process: GO:0006312 - mitotic recombination [Evidence IMP] [PMID 8849883]; GO_process: GO:0007131 - reciprocal meiotic recombination [Evidence IBA]; GO_process: GO:0000735 - removal of nonhomologous ends [Evidence IGI,IMP] [PMID 9256462]; mismatch repair protein MSH3 1612786 MSH3 30037336 MSH3 Sugiyamaella lignohabitans mismatch repair protein MSH3 XP_018736646.1 1609391 D 796027 CDS AWJ20_5129 30037337 1614395..1615261 D 1 NC_031673.1 Homo-isocitrate dehydrogenase; an NAD-linked mitochondrial enzyme required for the fourth step in the biosynthesis of lysine, in which homo-isocitrate is oxidatively decarboxylated to alpha-ketoadipate; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 11914276]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0051287 - NAD binding [Evidence IEA]; GO_function: GO:0047046 - homoisocitrate dehydrogenase activity [Evidence IEA]; GO_function: GO:0047046 - homoisocitrate dehydrogenase activity [Evidence IDA] [PMID 17223711]; GO_function: GO:0000287 - magnesium ion binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor [Evidence IEA]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0009085 - lysine biosynthetic process [Evidence IEA]; GO_process: GO:0009085 - lysine biosynthetic process [Evidence IC] [PMID 17223711]; GO_process: GO:0019878 - lysine biosynthetic process via aminoadipic acid [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; homoisocitrate dehydrogenase 1615261 LYS12 30037337 LYS12 Sugiyamaella lignohabitans homoisocitrate dehydrogenase XP_018736647.1 1614395 D 796027 CDS AWJ20_5130 30037339 1616070..1617131 D 1 NC_031673.1 Subunit of Slx5-Slx8 SUMO-targeted ubiquitin ligase (STUbL) complex; stimulated by prior attachment of SUMO to the substrate; contains a C-terminal RING domain; forms nuclear foci upon DNA replication stress; GO_component: GO:0033768 - SUMO-targeted ubiquitin ligase complex [Evidence IDA] [PMID 17848550]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 19270524]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA,IEA]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence IDA] [PMID 17728242]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence IDA] [PMID 17848550]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence IDA] [PMID 18032921]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0006281 - DNA repair [Evidence IEA]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IGI,IMP] [PMID 11139495]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IGI,IMP] [PMID 16325482]; GO_process: GO:0016925 - protein sumoylation [Evidence IGI,IMP] [PMID 16387868]; GO_process: GO:0016567 - protein ubiquitination [Evidence IEA]; GO_process: GO:0016567 - protein ubiquitination [Evidence IDA] [PMID 17728242]; GO_process: GO:0016567 - protein ubiquitination [Evidence IDA] [PMID 17848550]; GO_process: GO:0016567 - protein ubiquitination [Evidence IDA] [PMID 18032921]; GO_process: GO:0000723 - telomere maintenance [Evidence IMP] [PMID 16428246]; SUMO-targeted ubiquitin ligase complex subunit SLX8 1617131 SLX8 30037339 SLX8 Sugiyamaella lignohabitans SUMO-targeted ubiquitin ligase complex subunit SLX8 XP_018736648.1 1616070 D 796027 CDS AWJ20_5131 30037340 complement(1617493..1618575) D 1 NC_031673.1 rRNA m5C methyltransferase; methylates cytosine at position 2278 of 25S rRNA while Nop2p methylates cytosine at position 2870; contains seven beta-strand methyltransferase motif; localized to the nucleolus; interacts with Trm112p; homolog of NSUN5A, a human gene which is deleted in Williams-Beuren Syndrome; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 23913415]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 10649453]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0008168 - methyltransferase activity [Evidence IEA]; GO_function: GO:0009383 - rRNA (cytosine-C5-)-methyltransferase activity [Evidence IDA,IGI,IMP] [PMID 23913415]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0032259 - methylation [Evidence IEA]; GO_process: GO:0070475 - rRNA base methylation [Evidence IDA,IGI,IMP] [PMID 23913415]; Rcm1p 1618575 RCM1 30037340 RCM1 Sugiyamaella lignohabitans Rcm1p XP_018736649.1 1617493 R 796027 CDS AWJ20_5132 30037341 complement(1619263..1620906) D 1 NC_031673.1 Essential protein involved in mtDNA inheritance; may also function in the partitioning of the mitochondrial organelle or in the segregation of chromosomes, exhibits regions similar to members of a GTPase family; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14690591]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14690591]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0000002 - mitochondrial genome maintenance [Evidence IMP] [PMID 12702300]; GO_process: GO:0006276 - plasmid maintenance [Evidence IMP] [PMID 12702300]; Dml1p 1620906 DML1 30037341 DML1 Sugiyamaella lignohabitans Dml1p XP_018736650.1 1619263 R 796027 CDS AWJ20_5133 30037342 1622000..1622683 D 1 NC_031673.1 Exosome non-catalytic core component; involved in 3'-5' RNA processing and degradation in both the nucleus and the cytoplasm; has similarity to E. coli RNase PH and to human hRrp46p (EXOSC5); GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0000177 - cytoplasmic exosome (RNase complex) [Evidence IDA] [PMID 10465791]; GO_component: GO:0000177 - cytoplasmic exosome (RNase complex) [Evidence IDA] [PMID 19046973]; GO_component: GO:0000178 - exosome (RNase complex) [Evidence IEA]; GO_component: GO:0000176 - nuclear exosome (RNase complex) [Evidence IDA] [PMID 10465791]; GO_component: GO:0000176 - nuclear exosome (RNase complex) [Evidence IDA] [PMID 19046973]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0000467 - exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 10465791]; GO_process: GO:0000467 - exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 10508172]; GO_process: GO:0043628 - ncRNA 3'-end processing [Evidence IC] [PMID 10465791]; GO_process: GO:0070651 - nonfunctional rRNA decay [Evidence IC] [PMID 10465791]; GO_process: GO:0071042 - nuclear polyadenylation-dependent mRNA catabolic process [Evidence IMP] [PMID 19369424]; GO_process: GO:0071035 - nuclear polyadenylation-dependent rRNA catabolic process [Evidence IMP] [PMID 10465791]; GO_process: GO:0071038 - nuclear polyadenylation-dependent tRNA catabolic process [Evidence IDA] [PMID 15828860]; GO_process: GO:0071038 - nuclear polyadenylation-dependent tRNA catabolic process [Evidence IDA] [PMID 17643380]; GO_process: GO:0070478 - nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay [Evidence IC] [PMID 10465791]; GO_process: GO:0034427 - nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5' [Evidence IC] [PMID 10465791]; GO_process: GO:0070481 - nuclear-transcribed mRNA catabolic process, non-stop decay [Evidence IC] [PMID 10465791]; GO_process: GO:0071051 - polyadenylation-dependent snoRNA 3'-end processing [Evidence IC] [PMID 10465791]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; Rrp46p 1622683 RRP46 30037342 RRP46 Sugiyamaella lignohabitans Rrp46p XP_018736651.1 1622000 D 796027 CDS AWJ20_5134 30037343 complement(1622987..1626175) D 1 NC_031673.1 Mitochondrial and cytoplasmic valyl-tRNA synthetase; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IMP] [PMID 3275649]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IMP] [PMID 3275649]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0002161 - aminoacyl-tRNA editing activity [Evidence IEA]; GO_function: GO:0004812 - aminoacyl-tRNA ligase activity [Evidence IEA,IEA]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_function: GO:0004832 - valine-tRNA ligase activity [Evidence IEA,IEA]; GO_function: GO:0004832 - valine-tRNA ligase activity [Evidence ISS] [PMID 3294828]; GO_function: GO:0004832 - valine-tRNA ligase activity [Evidence IDA] [PMID 782885]; GO_process: GO:0006450 - regulation of translational fidelity [Evidence IEA]; GO_process: GO:0006418 - tRNA aminoacylation for protein translation [Evidence IEA]; GO_process: GO:0006412 - translation [Evidence IEA]; GO_process: GO:0006438 - valyl-tRNA aminoacylation [Evidence IEA]; GO_process: GO:0006438 - valyl-tRNA aminoacylation [Evidence IDA] [PMID 782885]; valine--tRNA ligase 1626175 VAS1 30037343 VAS1 Sugiyamaella lignohabitans valine--tRNA ligase XP_018736652.1 1622987 R 796027 CDS AWJ20_5135 30037344 1627122..1627409 D 1 NC_031673.1 Essential DEAH-box ATP-dependent RNA helicase specific to U3 snoRNP; predominantly nucleolar in distribution; required for 18S rRNA synthesis; GO_component: GO:0030686 - 90S preribosome [Evidence IDA] [PMID 12150911]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 10982841]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 22842922]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0032040 - small-subunit processome [Evidence IDA] [PMID 12068309]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0008026 - ATP-dependent helicase activity [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003724 - RNA helicase activity [Evidence IDA] [PMID 10982841]; GO_function: GO:0004386 - helicase activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0000462 - maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 16449634]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IDA,TAS] [PMID 10982841]; Ecm16p 1627409 ECM16 30037344 ECM16 Sugiyamaella lignohabitans Ecm16p XP_018736653.1 1627122 D 796027 CDS AWJ20_5136 30037345 1627534..1630995 D 1 NC_031673.1 Essential DEAH-box ATP-dependent RNA helicase specific to U3 snoRNP; predominantly nucleolar in distribution; required for 18S rRNA synthesis; GO_component: GO:0030686 - 90S preribosome [Evidence IDA] [PMID 12150911]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 10982841]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 22842922]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0032040 - small-subunit processome [Evidence IDA] [PMID 12068309]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0008026 - ATP-dependent helicase activity [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003724 - RNA helicase activity [Evidence IDA] [PMID 10982841]; GO_function: GO:0004386 - helicase activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0000462 - maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 16449634]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IDA,TAS] [PMID 10982841]; Ecm16p 1630995 ECM16 30037345 ECM16 Sugiyamaella lignohabitans Ecm16p XP_018736654.1 1627534 D 796027 CDS AWJ20_5137 30037346 complement(1631185..1632660) D 1 NC_031673.1 Subunit of the core form of RNA polymerase transcription factor TFIIH; has both protein kinase and DNA-dependent ATPase/helicase activities; essential for transcription and nucleotide excision repair; interacts with Tfb4p; GO_component: GO:0000439 - core TFIIH complex [Evidence IEA]; GO_component: GO:0000439 - core TFIIH complex [Evidence IDA] [PMID 14500720]; GO_component: GO:0000439 - core TFIIH complex [Evidence IDA] [PMID 19818408]; GO_component: GO:0005675 - holo TFIIH complex [Evidence IDA] [PMID 19818408]; GO_component: GO:0000112 - nucleotide-excision repair factor 3 complex [Evidence IDA] [PMID 8855246]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0000990 - core RNA polymerase binding transcription factor activity [Evidence IC] [PMID 19818408]; GO_function: GO:0046872 - metal ion binding [Evidence IEA,IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0006281 - DNA repair [Evidence IEA,IEA]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0006289 - nucleotide-excision repair [Evidence IEA]; GO_process: GO:0006289 - nucleotide-excision repair [Evidence IMP] [PMID 7891722]; GO_process: GO:0070816 - phosphorylation of RNA polymerase II C-terminal domain [Evidence IDA] [PMID 19450536]; GO_process: GO:0070816 - phosphorylation of RNA polymerase II C-terminal domain [Evidence IDA] [PMID 19679665]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IDA] [PMID 19818408]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA,IEA]; TFIIH/NER complex subunit SSL1 1632660 SSL1 30037346 SSL1 Sugiyamaella lignohabitans TFIIH/NER complex subunit SSL1 XP_018736655.1 1631185 R 796027 CDS AWJ20_5138 30037347 1633472..1635358 D 1 NC_031673.1 Component of the RSC chromatin remodeling complex; RSC functions in transcriptional regulation and elongation, chromosome stability, and establishing sister chromatid cohesion; involved in telomere maintenance; GO_component: GO:0016586 - RSC complex [Evidence IDA] [PMID 12052880]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0015616 - DNA translocase activity [Evidence IDA] [PMID 16455496]; GO_function: GO:0015616 - DNA translocase activity [Evidence IDA] [PMID 17188033]; GO_function: GO:0015616 - DNA translocase activity [Evidence IDA] [PMID 17918861]; GO_process: GO:0000082 - G1/S transition of mitotic cell cycle [Evidence IMP] [PMID 17542652]; GO_process: GO:0016568 - chromatin modification [Evidence IEA]; GO_process: GO:0006338 - chromatin remodeling [Evidence IDA] [PMID 12052880]; GO_process: GO:0006337 - nucleosome disassembly [Evidence IDA] [PMID 16492771]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006368 - transcription elongation from RNA polymerase II promoter [Evidence IDA] [PMID 17081996]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Rsc58p 1635358 RSC58 30037347 RSC58 Sugiyamaella lignohabitans Rsc58p XP_018736656.1 1633472 D 796027 CDS AWJ20_5139 30037348 complement(1636451..1639666) D 1 NC_031673.1 Divalent metal ion transporter involved in manganese homeostasis; has broad specificity for di-valent and tri-valent metals; post-translationally regulated by levels of metal ions; member of the Nramp family of metal transport proteins; GO_component: GO:0016023 - cytoplasmic membrane-bounded vesicle [Evidence IDA] [PMID 11027260]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0022890 - inorganic cation transmembrane transporter activity [Evidence IDA] [PMID 10574989]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0005215 - transporter activity [Evidence IEA]; GO_process: GO:0006877 - cellular cobalt ion homeostasis [Evidence IGI] [PMID 9115231]; GO_process: GO:0030026 - cellular manganese ion homeostasis [Evidence IMP] [PMID 11602606]; GO_process: GO:0006824 - cobalt ion transport [Evidence IGI] [PMID 9115231]; GO_process: GO:0006828 - manganese ion transport [Evidence IMP] [PMID 11602606]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; divalent metal ion transporter SMF2 1639666 SMF2 30037348 SMF2 Sugiyamaella lignohabitans divalent metal ion transporter SMF2 XP_018736657.1 1636451 R 796027 CDS AWJ20_5140 30037350 1641402..1644050 D 1 NC_031673.1 eIF3c subunit of the eukaryotic translation initiation factor 3 (eIF3); involved in the assembly of preinitiation complex and start codon selection; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 1332047]; GO_component: GO:0010494 - cytoplasmic stress granule [Evidence IDA] [PMID 19470581]; GO_component: GO:0016282 - eukaryotic 43S preinitiation complex [Evidence IEA]; GO_component: GO:0033290 - eukaryotic 48S preinitiation complex [Evidence IEA]; GO_component: GO:0005852 - eukaryotic translation initiation factor 3 complex [Evidence IEA,IEA]; GO_component: GO:0005852 - eukaryotic translation initiation factor 3 complex [Evidence IDA] [PMID 9660829]; GO_component: GO:0005852 - eukaryotic translation initiation factor 3 complex [Evidence IDA,IPI] [PMID 9671501]; GO_component: GO:0043614 - multi-eIF complex [Evidence IDA] [PMID 11018020]; GO_component: GO:0043614 - multi-eIF complex [Evidence IDA] [PMID 15838098]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_function: GO:0003743 - translation initiation factor activity [Evidence IEA,IEA,IEA]; GO_function: GO:0003743 - translation initiation factor activity [Evidence IDA] [PMID 9671501]; GO_function: GO:0031369 - translation initiation factor binding [Evidence IEA]; GO_function: GO:0031369 - translation initiation factor binding [Evidence IDA,IPI] [PMID 15145951]; GO_process: GO:0001731 - formation of translation preinitiation complex [Evidence IEA]; GO_process: GO:0006446 - regulation of translational initiation [Evidence IEA]; GO_process: GO:0006412 - translation [Evidence IEA]; GO_process: GO:0006413 - translational initiation [Evidence IEA,IEA,IEA]; GO_process: GO:0006413 - translational initiation [Evidence IDA] [PMID 9671501]; GO_process: GO:0006413 - translational initiation [Evidence IGI,IMP] [PMID 9722586]; Nip1p 1644050 NIP1 30037350 NIP1 Sugiyamaella lignohabitans Nip1p XP_018736658.1 1641402 D 796027 CDS AWJ20_5141 30037351 complement(1644374..1649617) D 1 NC_031673.1 Proteasome activator; binds the core proteasome (CP) and stimulates proteasome-mediated protein degradation by inducing gate opening; required for sequestering CP into proteasome storage granule (PSG) during quiescent phase and for nuclear import of CP in proliferating cells; required for resistance to bleomycin, may be involved in protecting against oxidative damage; similar to mammalian PA200; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 12973301]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 15778719]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22908043]; GO_component: GO:0000502 - proteasome complex [Evidence IDA] [PMID 15778719]; GO_component: GO:0005839 - proteasome core complex [Evidence IDA,IMP] [PMID 15778719]; GO_component: GO:0034515 - proteasome storage granule [Evidence IDA] [PMID 23982732]; GO_function: GO:0016504 - peptidase activator activity [Evidence IDA] [PMID 22025621]; GO_function: GO:0070628 - proteasome binding [Evidence IDA,IMP] [PMID 22025621]; GO_process: GO:0006281 - DNA repair [Evidence IEA]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0043248 - proteasome assembly [Evidence IMP] [PMID 12973301]; GO_process: GO:0043248 - proteasome assembly [Evidence IGI] [PMID 17911101]; GO_process: GO:1990236 - proteasome core complex import into nucleus [Evidence IMP] [PMID 23982732]; GO_process: GO:0061136 - regulation of proteasomal protein catabolic process [Evidence IDA] [PMID 22025621]; GO_process: GO:1990237 - sequestration of proteasome core complex in proteasome storage granule [Evidence IMP] [PMID 23982732]; Blm10p 1649617 BLM10 30037351 BLM10 Sugiyamaella lignohabitans Blm10p XP_018736659.1 1644374 R 796027 CDS AWJ20_5142 30037352 complement(1649661..1650494) D 1 NC_031673.1 uncharacterized protein 1650494 30037352 AWJ20_5142 Sugiyamaella lignohabitans uncharacterized protein XP_018736660.1 1649661 R 796027 CDS AWJ20_5143 30037353 complement(1658066..1659751) D 1 NC_031673.1 uncharacterized protein 1659751 30037353 AWJ20_5143 Sugiyamaella lignohabitans uncharacterized protein XP_018736661.1 1658066 R 796027 CDS AWJ20_5144 30037354 complement(1669610..1672813) D 1 NC_031673.1 uncharacterized protein 1672813 30037354 AWJ20_5144 Sugiyamaella lignohabitans uncharacterized protein XP_018736662.1 1669610 R 796027 CDS AWJ20_5145 30037355 complement(1673656..1675533) D 1 NC_031673.1 uncharacterized protein 1675533 30037355 AWJ20_5145 Sugiyamaella lignohabitans uncharacterized protein XP_018736663.1 1673656 R 796027 CDS AWJ20_5146 30037356 1679282..1683403 D 1 NC_031673.1 serine/threonine protein kinase KIN2 1683403 KIN2 30037356 KIN2 Sugiyamaella lignohabitans serine/threonine protein kinase KIN2 XP_018736664.1 1679282 D 796027 CDS AWJ20_5147 30037357 complement(1683805..1685922) D 1 NC_031673.1 Component of a complex containing the Tor2p kinase and other proteins; complex may have a role in regulation of cell growth; GO_component: GO:0031932 - TORC2 complex [Evidence IPI] [PMID 12408816]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0031929 - TOR signaling [Evidence IC] [PMID 12408816]; GO_process: GO:0030950 - establishment or maintenance of actin cytoskeleton polarity [Evidence IPI] [PMID 12408816]; GO_process: GO:0031505 - fungal-type cell wall organization [Evidence IPI] [PMID 12408816]; GO_process: GO:0001558 - regulation of cell growth [Evidence IPI] [PMID 12408816]; Avo2p 1685922 AVO2 30037357 AVO2 Sugiyamaella lignohabitans Avo2p XP_018736665.1 1683805 R 796027 CDS AWJ20_5148 30037358 1688655..1689542 D 1 NC_031673.1 Protein involved in vitamin B6 biosynthesis; member of a stationary phase-induced gene family; coregulated with SNO1; interacts with Sno1p and with Yhr198p, perhaps as a multiprotein complex containing other Snz and Sno proteins; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0004359 - glutaminase activity [Evidence IDA] [PMID 14764090]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0042823 - pyridoxal phosphate biosynthetic process [Evidence IEA]; GO_process: GO:0008615 - pyridoxine biosynthetic process [Evidence IEA]; GO_process: GO:0008615 - pyridoxine biosynthetic process [Evidence IMP] [PMID 12271461]; GO_process: GO:0008615 - pyridoxine biosynthetic process [Evidence IMP] [PMID 14764090]; GO_process: GO:0009228 - thiamine biosynthetic process [Evidence IMP] [PMID 12271461]; pyridoxine biosynthesis protein SNZ1 1689542 SNZ1 30037358 SNZ1 Sugiyamaella lignohabitans pyridoxine biosynthesis protein SNZ1 XP_018736666.1 1688655 D 796027 CDS AWJ20_5149 30037359 complement(1688948..1689643) D 1 NC_031673.1 conserved hypothetical membrane protein 1689643 30037359 AWJ20_5149 Sugiyamaella lignohabitans conserved hypothetical membrane protein XP_018736667.1 1688948 R 796027 CDS AWJ20_5152 30037363 1693005..1693655 D 1 NC_031673.1 Ribosomal 60S subunit protein L1A; N-terminally acetylated; homologous to mammalian ribosomal protein L10A and bacterial L1; RPL1A has a paralog, RPL1B, that arose from the whole genome duplication; rpl1a rpl1b double null mutation is lethal; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0022625 - cytosolic large ribosomal subunit [Evidence IDA] [PMID 11983894]; GO_component: GO:0015934 - large ribosomal subunit [Evidence IEA]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IC] [PMID 11983894]; GO_process: GO:0002181 - cytoplasmic translation [Evidence IC] [PMID 11983894]; GO_process: GO:0006412 - translation [Evidence IEA]; ribosomal 60S subunit protein L1A 1693655 RPL1A 30037363 RPL1A Sugiyamaella lignohabitans ribosomal 60S subunit protein L1A XP_018736668.1 1693005 D 796027 CDS AWJ20_5153 30037364 1695329..1696837 D 1 NC_031673.1 Pho85p cyclin of the Pho80p subfamily; forms a functional kinase complex with Pho85p which phosphorylates Mmr1p and is regulated by Pho81p; involved in glycogen metabolism, expression is cell-cycle regulated; PCL7 has a paralog, PCL6, that arose from the whole genome duplication; GO_component: GO:0000307 - cyclin-dependent protein kinase holoenzyme complex [Evidence IPI] [PMID 16611745]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 16611745]; GO_function: GO:0016538 - cyclin-dependent protein serine/threonine kinase regulator activity [Evidence IDA] [PMID 12407105]; GO_function: GO:0019901 - protein kinase binding [Evidence IEA]; GO_process: GO:0005975 - carbohydrate metabolic process [Evidence IEA]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0005977 - glycogen metabolic process [Evidence IEA]; GO_process: GO:0000079 - regulation of cyclin-dependent protein serine/threonine kinase activity [Evidence IEA]; GO_process: GO:0000079 - regulation of cyclin-dependent protein serine/threonine kinase activity [Evidence IDA] [PMID 12407105]; GO_process: GO:0005979 - regulation of glycogen biosynthetic process [Evidence IGI] [PMID 11602261]; GO_process: GO:0005981 - regulation of glycogen catabolic process [Evidence IGI] [PMID 11602261]; GO_process: GO:0031647 - regulation of protein stability [Evidence IMP] [PMID 16611745]; Pcl7p 1696837 PCL7 30037364 PCL7 Sugiyamaella lignohabitans Pcl7p XP_018736669.1 1695329 D 796027 CDS AWJ20_5154 30037365 1697474..1698217 D 1 NC_031673.1 Uncharacterized protein YGL138C 1698217 30037365 AWJ20_5154 Sugiyamaella lignohabitans Uncharacterized protein YGL138C XP_018736670.1 1697474 D 796027 CDS AWJ20_5155 30037366 complement(1698471..1700603) D 1 NC_031673.1 Putative FAD transporter; required for uptake of FAD into endoplasmic reticulum; involved in cell wall maintenance; FLC1 has a paralog, FLC3, that arose from the whole genome duplication; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 14562095]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 16717099]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0000324 - fungal-type vacuole [Evidence IDA] [PMID 14562095]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0015230 - FAD transmembrane transporter activity [Evidence IMP] [PMID 16717099]; GO_process: GO:0015883 - FAD transport [Evidence IMP] [PMID 16717099]; GO_process: GO:0009272 - fungal-type cell wall biogenesis [Evidence IMP] [PMID 16717099]; GO_process: GO:0006457 - protein folding [Evidence IMP] [PMID 16717099]; GO_process: GO:0006810 - transport [Evidence IEA]; Flc1p 1700603 FLC1 30037366 FLC1 Sugiyamaella lignohabitans Flc1p XP_018736671.1 1698471 R 796027 CDS AWJ20_5156 30037367 1703965..1705815 D 1 NC_031673.1 uncharacterized protein 1705815 30037367 AWJ20_5156 Sugiyamaella lignohabitans uncharacterized protein XP_018736672.1 1703965 D 796027 CDS AWJ20_5157 30037368 complement(1709416..1710774) D 1 NC_031673.1 Cystathionine beta-synthase; catalyzes synthesis of cystathionine from serine and homocysteine, the first committed step in cysteine biosynthesis; responsible for hydrogen sulfide generation; advances passage through START by promoting cell growth which requires catalytic activity, and reducing critical cell size independent of catalytic activity; mutations in human ortholog cause homocystinuria; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 23222640]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0030554 - adenyl nucleotide binding [Evidence IEA]; GO_function: GO:0004122 - cystathionine beta-synthase activity [Evidence IEA,IEA]; GO_function: GO:0004122 - cystathionine beta-synthase activity [Evidence IMP] [PMID 10509018]; GO_function: GO:0004122 - cystathionine beta-synthase activity [Evidence IDA] [PMID 10766767]; GO_function: GO:0004122 - cystathionine beta-synthase activity [Evidence IDA] [PMID 11948191]; GO_function: GO:0004122 - cystathionine beta-synthase activity [Evidence IDA] [PMID 19264153]; GO_function: GO:0004122 - cystathionine beta-synthase activity [Evidence IMP] [PMID 8366024]; GO_function: GO:0016829 - lyase activity [Evidence IEA]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0019344 - cysteine biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0006535 - cysteine biosynthetic process from serine [Evidence IEA]; GO_process: GO:0006535 - cysteine biosynthetic process from serine [Evidence IDA] [PMID 11948191]; GO_process: GO:0019343 - cysteine biosynthetic process via cystathionine [Evidence IEA]; GO_process: GO:0019343 - cysteine biosynthetic process via cystathionine [Evidence IMP] [PMID 10509018]; GO_process: GO:0019343 - cysteine biosynthetic process via cystathionine [Evidence IMP] [PMID 8366024]; GO_process: GO:0070814 - hydrogen sulfide biosynthetic process [Evidence IDA] [PMID 19531479]; GO_process: GO:0019346 - transsulfuration [Evidence IMP] [PMID 8366024]; GO_process: GO:0007089 - traversing start control point of mitotic cell cycle [Evidence IMP] [PMID 22438835]; cystathionine beta-synthase CYS4 1710774 CYS4 30037368 CYS4 Sugiyamaella lignohabitans cystathionine beta-synthase CYS4 XP_018736673.1 1709416 R 796027 CDS AWJ20_5158 30037369 complement(1711634..1712974) D 1 NC_031673.1 uncharacterized protein 1712974 30037369 AWJ20_5158 Sugiyamaella lignohabitans uncharacterized protein XP_018736674.1 1711634 R 796027 CDS AWJ20_5159 30037370 1714069..1715565 D 1 NC_031673.1 uncharacterized protein 1715565 30037370 AWJ20_5159 Sugiyamaella lignohabitans uncharacterized protein XP_018736675.1 1714069 D 796027 CDS AWJ20_5160 30037372 complement(1715755..1716633) D 1 NC_031673.1 Subunit of the trimeric GatFAB AmidoTransferase(AdT) complex; involved in the formation of Q-tRNAQ; mutation is functionally complemented by the bacterial GatB ortholog; GO_component: GO:0030956 - glutamyl-tRNA(Gln) amidotransferase complex [Evidence IEA]; GO_component: GO:0030956 - glutamyl-tRNA(Gln) amidotransferase complex [Evidence IDA] [PMID 19417106]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 19417106]; GO_component: GO:0005739 - mitochondrion [Evidence IGI] [PMID 9287027]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0016884 - carbon-nitrogen ligase activity, with glutamine as amido-N-donor [Evidence IEA,IEA]; GO_function: GO:0050567 - glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity [Evidence IEA]; GO_function: GO:0050567 - glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity [Evidence IDA] [PMID 19417106]; GO_function: GO:0016874 - ligase activity [Evidence IEA,IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0070681 - glutaminyl-tRNAGln biosynthesis via transamidation [Evidence IEA]; GO_process: GO:0070681 - glutaminyl-tRNAGln biosynthesis via transamidation [Evidence IDA] [PMID 19417106]; GO_process: GO:0032543 - mitochondrial translation [Evidence IEA]; GO_process: GO:0032543 - mitochondrial translation [Evidence IMP] [PMID 8082172]; GO_process: GO:0006412 - translation [Evidence IEA]; glutamyl-tRNA(Gln) amidotransferase subunit PET112 1716633 PET112 30037372 PET112 Sugiyamaella lignohabitans glutamyl-tRNA(Gln) amidotransferase subunit PET112 XP_018736676.1 1715755 R 796027 CDS AWJ20_5161 30037373 1718502..1719035 D 1 NC_031673.1 Adenine phosphoribosyltransferase; catalyzes the formation of AMP from adenine and 5-phosphoribosylpyrophosphate; involved in the salvage pathway of purine nucleotide biosynthesis; APT1 has a paralog, APT2, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003999 - adenine phosphoribosyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0003999 - adenine phosphoribosyltransferase activity [Evidence IDA] [PMID 9864350]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA]; GO_process: GO:0006167 - AMP biosynthetic process [Evidence TAS] [PMID 9357956]; GO_process: GO:0044209 - AMP salvage [Evidence IEA]; GO_process: GO:0006168 - adenine salvage [Evidence IEA]; GO_process: GO:0006168 - adenine salvage [Evidence IMP] [PMID 9864350]; GO_process: GO:0009116 - nucleoside metabolic process [Evidence IEA]; GO_process: GO:0006166 - purine ribonucleoside salvage [Evidence IEA]; adenine phosphoribosyltransferase APT1 1719035 APT1 30037373 APT1 Sugiyamaella lignohabitans adenine phosphoribosyltransferase APT1 XP_018736677.1 1718502 D 796027 CDS AWJ20_5162 30037374 1719724..1720716 D 1 NC_031673.1 Serine/threonine protein kinase, subunit of transcription factor TFIIH; involved in transcription initiation at RNA polymerase II promoters; phosphorylates Ser5 residue of the PolII C-terminal domain (CTD) at gene promoters; relocalizes to the cytosol in response to hypoxia; GO_component: GO:0070985 - TFIIK complex [Evidence IDA] [PMID 11839796]; GO_component: GO:0070985 - TFIIK complex [Evidence IDA] [PMID 19818408]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 22932476]; GO_component: GO:0005675 - holo TFIIH complex [Evidence IDA] [PMID 19818408]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22932476]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0008353 - RNA polymerase II carboxy-terminal domain kinase activity [Evidence IEA]; GO_function: GO:0008353 - RNA polymerase II carboxy-terminal domain kinase activity [Evidence IDA] [PMID 7760796]; GO_function: GO:0008353 - RNA polymerase II carboxy-terminal domain kinase activity [Evidence IDA,IMP] [PMID 9702190]; GO_function: GO:0000990 - core RNA polymerase binding transcription factor activity [Evidence IC] [PMID 19818408]; GO_function: GO:0019912 - cyclin-dependent protein kinase activating kinase activity [Evidence IDA,IMP] [PMID 7760796]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0004672 - protein kinase activity [Evidence IEA]; GO_function: GO:0004672 - protein kinase activity [Evidence IDA] [PMID 16319894]; GO_function: GO:0004674 - protein serine/threonine kinase activity [Evidence IEA,IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016772 - transferase activity, transferring phosphorus-containing groups [Evidence IEA]; GO_process: GO:0006370 - 7-methylguanosine mRNA capping [Evidence IMP] [PMID 22689984]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; GO_process: GO:0070816 - phosphorylation of RNA polymerase II C-terminal domain [Evidence IDA] [PMID 11839796]; GO_process: GO:0070816 - phosphorylation of RNA polymerase II C-terminal domain [Evidence IDA] [PMID 19450536]; GO_process: GO:0070816 - phosphorylation of RNA polymerase II C-terminal domain [Evidence IDA] [PMID 19679665]; GO_process: GO:0070816 - phosphorylation of RNA polymerase II C-terminal domain [Evidence IDA] [PMID 7760796]; GO_process: GO:0070816 - phosphorylation of RNA polymerase II C-terminal domain [Evidence IDA,IMP] [PMID 9702190]; GO_process: GO:1901921 - phosphorylation of RNA polymerase II C-terminal domain involved in recruitment of 3'-end processing factors to RNA polymerase II holoenzyme complex [Evidence IMP,IPI] [PMID 10594013]; GO_process: GO:1900018 - phosphorylation of RNA polymerase II C-terminal domain serine 5 residues involved in recruitment of mRNA capping enzyme to RNA polymerase II holoenzyme complex [Evidence IMP] [PMID 10594013]; GO_process: GO:1900018 - phosphorylation of RNA polymerase II C-terminal domain serine 5 residues involved in recruitment of mRNA capping enzyme to RNA polymerase II holoenzyme complex [Evidence IMP] [PMID 19666497]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IDA] [PMID 14749387]; GO_process: GO:0006468 - protein phosphorylation [Evidence IEA]; GO_process: GO:0006468 - protein phosphorylation [Evidence IDA] [PMID 16319894]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006360 - transcription from RNA polymerase I promoter [Evidence IMP] [PMID 12015980]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IDA] [PMID 19818408]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IMP] [PMID 7760796]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IMP] [PMID 7783209]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; TFIIH complex serine/threonine-protein kinase subunit KIN28 1720716 KIN28 30037374 KIN28 Sugiyamaella lignohabitans TFIIH complex serine/threonine-protein kinase subunit KIN28 XP_018736678.1 1719724 D 796027 CDS AWJ20_5163 30037375 1721355..1722329 D 1 NC_031673.1 Gamma subunit of the oligosaccharyltransferase complex of the ER lumen; complex catalyzes asparagine-linked glycosylation of newly synthesized proteins; Ost3p is important for N-glycosylation of a subset of proteins; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016021 - integral component of membrane [Evidence IMP] [PMID 7622558]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0008250 - oligosaccharyltransferase complex [Evidence IPI] [PMID 10358084]; GO_component: GO:0008250 - oligosaccharyltransferase complex [Evidence IPI] [PMID 16297388]; GO_component: GO:0008250 - oligosaccharyltransferase complex [Evidence IPI] [PMID 9405463]; GO_function: GO:0004579 - dolichyl-diphosphooligosaccharide-protein glycotransferase activity [Evidence IMP] [PMID 7622558]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA]; GO_process: GO:0006487 - protein N-linked glycosylation [Evidence IPI] [PMID 9405463]; GO_process: GO:0035269 - protein O-linked mannosylation [Evidence IGI] [PMID 22492205]; GO_process: GO:0006461 - protein complex assembly [Evidence IMP] [PMID 10358084]; GO_process: GO:0006486 - protein glycosylation [Evidence IEA]; GO_process: GO:0006486 - protein glycosylation [Evidence IMP] [PMID 7622558]; Ost3p 1722329 OST3 30037375 OST3 Sugiyamaella lignohabitans Ost3p XP_018736679.1 1721355 D 796027 CDS AWJ20_5164 30037376 complement(1722533..1725772) D 1 NC_031673.1 SH3-domain protein located in the bud neck and cytokinetic actin ring; relocalizes from bud neck to nucleus upon DNA replication stress; activates the chitin synthase activity of Chs2p during cytokinesis; suppressor of growth and cytokinesis defects of chs2 phospho-mutants; GO_component: GO:0044697 - HICS complex [Evidence IPI] [PMID 22623719]; GO_component: GO:0005935 - cellular bud neck [Evidence IEA]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 14562095]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 21498574]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 22842922]; GO_component: GO:0000142 - cellular bud neck contractile ring [Evidence IDA] [PMID 21498574]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_function: GO:0030234 - enzyme regulator activity [Evidence IGI] [PMID 22956544]; GO_process: GO:0000917 - barrier septum assembly [Evidence IGI,IPI] [PMID 19528296]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; Cyk3p 1725772 CYK3 30037376 CYK3 Sugiyamaella lignohabitans Cyk3p XP_018736680.1 1722533 R 796027 CDS AWJ20_5165 30037377 1727485..1729965 D 1 NC_031673.1 uncharacterized protein 1729965 30037377 AWJ20_5165 Sugiyamaella lignohabitans uncharacterized protein XP_018736681.1 1727485 D 796027 CDS AWJ20_5166 30037378 complement(1730163..1731584) D 1 NC_031673.1 uncharacterized protein 1731584 30037378 AWJ20_5166 Sugiyamaella lignohabitans uncharacterized protein XP_018736682.1 1730163 R 796027 CDS AWJ20_5167 30037379 1732292..1733137 D 1 NC_031673.1 uncharacterized protein 1733137 30037379 AWJ20_5167 Sugiyamaella lignohabitans uncharacterized protein XP_018736683.1 1732292 D 796027 CDS AWJ20_5168 30037380 complement(1735763..1737736) D 1 NC_031673.1 Hsp70 family ATPase; constituent of the import motor component of the Translocase of the Inner Mitochondrial membrane (TIM23 complex); involved in protein translocation and folding; subunit of SceI endonuclease; SSC1 has a paralog, ECM10, that arose from the whole genome duplication; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IDA] [PMID 7935837]; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA]; GO_component: GO:0042645 - mitochondrial nucleoid [Evidence IDA] [PMID 15692048]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 11914276]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0001405 - presequence translocase-associated import motor [Evidence IDA] [PMID 14517234]; GO_component: GO:0001405 - presequence translocase-associated import motor [Evidence IDA] [PMID 14638855]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016887 - ATPase activity [Evidence IDA] [PMID 11096111]; GO_function: GO:0030234 - enzyme regulator activity [Evidence IDA] [PMID 10464305]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0051082 - unfolded protein binding [Evidence IEA]; GO_process: GO:0032079 - positive regulation of endodeoxyribonuclease activity [Evidence IDA] [PMID 10464305]; GO_process: GO:0006457 - protein folding [Evidence IEA]; GO_process: GO:0030150 - protein import into mitochondrial matrix [Evidence IMP] [PMID 10779357]; GO_process: GO:0030150 - protein import into mitochondrial matrix [Evidence IDA] [PMID 8654364]; GO_process: GO:0042026 - protein refolding [Evidence IMP] [PMID 16460754]; GO_process: GO:0042026 - protein refolding [Evidence IDA] [PMID 9973563]; GO_process: GO:0043335 - protein unfolding [Evidence IMP] [PMID 8408192]; GO_process: GO:0006950 - response to stress [Evidence IEA]; Hsp70 family ATPase SSC1 1737736 SSC1 30037380 SSC1 Sugiyamaella lignohabitans Hsp70 family ATPase SSC1 XP_018736684.1 1735763 R 796027 CDS AWJ20_5169 30037381 join(1745564..1745623,1746048..1749026) D 1 NC_031673.1 NAD(+)-dependent glutamate dehydrogenase; degrades glutamate to ammonia and alpha-ketoglutarate; expression sensitive to nitrogen catabolite repression and intracellular ammonia levels; genetically interacts with GDH3 by suppressing stress-induced apoptosis; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0004352 - glutamate dehydrogenase (NAD+) activity [Evidence IEA,IEA]; GO_function: GO:0004352 - glutamate dehydrogenase (NAD+) activity [Evidence IMP,ISS] [PMID 1975578]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_process: GO:0006520 - cellular amino acid metabolic process [Evidence IEA]; GO_process: GO:0019551 - glutamate catabolic process to 2-oxoglutarate [Evidence IEA]; GO_process: GO:0006807 - nitrogen compound metabolic process [Evidence IMP] [PMID 1975578]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; glutamate dehydrogenase (NAD(+)) 1749026 GDH2 30037381 GDH2 Sugiyamaella lignohabitans glutamate dehydrogenase (NAD(+)) XP_018736685.1 1745564 D 796027 CDS AWJ20_5170 30037383 1749983..1752097 D 1 NC_031673.1 Putative ferric reductase with similarity to Fre2p; expression induced by low copper levels; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 17553781]; GO_function: GO:0052851 - ferric-chelate reductase (NADPH) activity [Evidence IEA]; GO_function: GO:0000293 - ferric-chelate reductase activity [Evidence IGI] [PMID 17553781]; GO_function: GO:0000293 - ferric-chelate reductase activity [Evidence IDA] [PMID 17681937]; GO_function: GO:0000293 - ferric-chelate reductase activity [Evidence ISA] [PMID 9726978]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_process: GO:0015677 - copper ion import [Evidence IGI] [PMID 17553781]; GO_process: GO:0006825 - copper ion transport [Evidence IEA]; GO_process: GO:0006811 - ion transport [Evidence IEA]; GO_process: GO:0055072 - iron ion homeostasis [Evidence IEA]; GO_process: GO:0006826 - iron ion transport [Evidence IGI] [PMID 17553781]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; Fre7p 1752097 FRE7 30037383 FRE7 Sugiyamaella lignohabitans Fre7p XP_018736686.1 1749983 D 796027 CDS AWJ20_5171 30037384 1753151..1756465 D 1 NC_031673.1 Protein required for export of the ribosomal subunits; associates with the RNA components of the pre-ribosomes; has a role in nuclear import in association with Pse1p; also plays a role in the cell cycle and the DNA damage response; contains HEAT-repeats; GO_component: GO:0030686 - 90S preribosome [Evidence IDA] [PMID 12150911]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 22842922]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14729571]; GO_component: GO:0005840 - ribosome [Evidence TAS] [PMID 12067653]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_process: GO:0000462 - maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence TAS] [PMID 12067653]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; GO_process: GO:0042254 - ribosome biogenesis [Evidence TAS] [PMID 12067653]; Rrp12p 1756465 RRP12 30037384 RRP12 Sugiyamaella lignohabitans Rrp12p XP_018736687.1 1753151 D 796027 CDS AWJ20_5172 30037385 complement(1761387..1763150) D 1 NC_031673.1 uncharacterized protein 1763150 30037385 AWJ20_5172 Sugiyamaella lignohabitans uncharacterized protein XP_018736688.1 1761387 R 796027 CDS AWJ20_5173 30037386 complement(1766138..1768222) D 1 NC_031673.1 uncharacterized protein 1768222 30037386 AWJ20_5173 Sugiyamaella lignohabitans uncharacterized protein XP_018736689.1 1766138 R 796027 CDS AWJ20_5174 30037387 1769944..1772577 D 1 NC_031673.1 uncharacterized protein 1772577 30037387 AWJ20_5174 Sugiyamaella lignohabitans uncharacterized protein XP_018736690.1 1769944 D 796027 CDS AWJ20_5175 30037388 complement(1773145..1773702) D 1 NC_031673.1 uncharacterized protein 1773702 30037388 AWJ20_5175 Sugiyamaella lignohabitans uncharacterized protein XP_018736691.1 1773145 R 796027 CDS AWJ20_5176 30037389 complement(1773761..1774207) D 1 NC_031673.1 putative type II inositol 1,4,5-trisphosphate 5-phosphatase 1774207 30037389 AWJ20_5176 Sugiyamaella lignohabitans putative type II inositol 1,4,5-trisphosphate 5-phosphatase XP_018736692.1 1773761 R 796027 CDS AWJ20_5177 30037390 complement(1777269..1778714) D 1 NC_031673.1 GDP dissociation inhibitor; regulates vesicle traffic in secretory pathways by regulating the dissociation of GDP from the Sec4/Ypt/rab family of GTP binding proteins; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_function: GO:0005096 - GTPase activator activity [Evidence IEA]; GO_function: GO:0005093 - Rab GDP-dissociation inhibitor activity [Evidence IEA]; GO_function: GO:0005093 - Rab GDP-dissociation inhibitor activity [Evidence IDA] [PMID 8157010]; GO_process: GO:0043547 - positive regulation of GTPase activity [Evidence IEA]; GO_process: GO:0015031 - protein transport [Evidence IEA,IEA]; GO_process: GO:0050790 - regulation of catalytic activity [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IMP] [PMID 8157010]; Gdi1p 1778714 GDI1 30037390 GDI1 Sugiyamaella lignohabitans Gdi1p XP_018736693.1 1777269 R 796027 CDS AWJ20_5178 30037391 complement(1781313..1781744) D 1 NC_031673.1 uncharacterized protein 1781744 30037391 AWJ20_5178 Sugiyamaella lignohabitans uncharacterized protein XP_018736694.1 1781313 R 796027 CDS AWJ20_5179 30037392 1782485..1785379 D 1 NC_031673.1 Glycoprotein subunit of transmembrane ring of nuclear pore complex; contributes to nucleocytoplasmic transport, nuclear pore complex (NPC) biogenesis and spindle pole body duplication; homologous to human NUP210; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005641 - nuclear envelope lumen [Evidence IDA] [PMID 9988776]; GO_component: GO:0031965 - nuclear membrane [Evidence IEA]; GO_component: GO:0005643 - nuclear pore [Evidence IEA,IEA]; GO_component: GO:0005643 - nuclear pore [Evidence IDA] [PMID 7559775]; GO_component: GO:0005643 - nuclear pore [Evidence IDA] [PMID 8138573]; GO_component: GO:0005643 - nuclear pore [Evidence IDA] [PMID 9988776]; GO_component: GO:0070762 - nuclear pore transmembrane ring [Evidence IDA] [PMID 10684247]; GO_component: GO:0070762 - nuclear pore transmembrane ring [Evidence IDA,IPI] [PMID 19414609]; GO_component: GO:0070762 - nuclear pore transmembrane ring [Evidence IDA] [PMID 7559775]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_function: GO:0043495 - protein anchor [Evidence IDA] [PMID 7559775]; GO_function: GO:0017056 - structural constituent of nuclear pore [Evidence IC] [PMID 10684247]; GO_process: GO:0051028 - mRNA transport [Evidence IEA]; GO_process: GO:0006999 - nuclear pore organization [Evidence IGI] [PMID 19414609]; GO_process: GO:0006913 - nucleocytoplasmic transport [Evidence IC] [PMID 8138573]; GO_process: GO:0006606 - protein import into nucleus [Evidence IDA] [PMID 7559775]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0030474 - spindle pole body duplication [Evidence IGI] [PMID 20713690]; GO_process: GO:0006810 - transport [Evidence IEA]; Pom152p 1785379 POM152 30037392 POM152 Sugiyamaella lignohabitans Pom152p XP_018736695.1 1782485 D 796027 CDS AWJ20_5180 30037394 1785430..1786467 D 1 NC_031673.1 Glycoprotein subunit of transmembrane ring of nuclear pore complex; contributes to nucleocytoplasmic transport, nuclear pore complex (NPC) biogenesis and spindle pole body duplication; homologous to human NUP210; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005641 - nuclear envelope lumen [Evidence IDA] [PMID 9988776]; GO_component: GO:0031965 - nuclear membrane [Evidence IEA]; GO_component: GO:0005643 - nuclear pore [Evidence IEA,IEA]; GO_component: GO:0005643 - nuclear pore [Evidence IDA] [PMID 7559775]; GO_component: GO:0005643 - nuclear pore [Evidence IDA] [PMID 8138573]; GO_component: GO:0005643 - nuclear pore [Evidence IDA] [PMID 9988776]; GO_component: GO:0070762 - nuclear pore transmembrane ring [Evidence IDA] [PMID 10684247]; GO_component: GO:0070762 - nuclear pore transmembrane ring [Evidence IDA,IPI] [PMID 19414609]; GO_component: GO:0070762 - nuclear pore transmembrane ring [Evidence IDA] [PMID 7559775]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_function: GO:0043495 - protein anchor [Evidence IDA] [PMID 7559775]; GO_function: GO:0017056 - structural constituent of nuclear pore [Evidence IC] [PMID 10684247]; GO_process: GO:0051028 - mRNA transport [Evidence IEA]; GO_process: GO:0006999 - nuclear pore organization [Evidence IGI] [PMID 19414609]; GO_process: GO:0006913 - nucleocytoplasmic transport [Evidence IC] [PMID 8138573]; GO_process: GO:0006606 - protein import into nucleus [Evidence IDA] [PMID 7559775]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0030474 - spindle pole body duplication [Evidence IGI] [PMID 20713690]; GO_process: GO:0006810 - transport [Evidence IEA]; Pom152p 1786467 POM152 30037394 POM152 Sugiyamaella lignohabitans Pom152p XP_018736696.1 1785430 D 796027 CDS AWJ20_5181 30037395 1786964..1787953 D 1 NC_031673.1 Methyltransferase required for m3U2843 methylation of the 25S rRNA; S-adenosylmethionine-dependent; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm; YLR063W is not an essential gene; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 24335083]; GO_function: GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity [Evidence ISM] [PMID 19351663]; GO_function: GO:0070042 - rRNA (uridine-N3-)-methyltransferase activity [Evidence IMP] [PMID 24335083]; GO_process: GO:0070475 - rRNA base methylation [Evidence IMP] [PMID 24335083]; Bmt6p 1787953 BMT6 30037395 BMT6 Sugiyamaella lignohabitans Bmt6p XP_018736697.1 1786964 D 796027 CDS AWJ20_5182 30037396 complement(1790100..1790714) D 1 NC_031673.1 uncharacterized protein 1790714 30037396 AWJ20_5182 Sugiyamaella lignohabitans uncharacterized protein XP_018736698.1 1790100 R 796027 CDS AWJ20_5183 30037397 complement(1791156..1792238) D 1 NC_031673.1 Protein involved in DNA repair; related to the human CSA protein that is involved in transcription-coupled repair nucleotide excision repair; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IC] [PMID 8830695]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006281 - DNA repair [Evidence IEA]; GO_process: GO:0006281 - DNA repair [Evidence IGI] [PMID 8830695]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; Rad28p 1792238 RAD28 30037397 RAD28 Sugiyamaella lignohabitans Rad28p XP_018736699.1 1791156 R 796027 CDS AWJ20_5184 30037398 complement(1792740..1796435) D 1 NC_031673.1 Intermediate filament protein; required for nuclear and mitochondrial transmission to daughter buds; contains a Phox homology (PX) domain and specifically binds phosphatidylinositol 3-phosphate (PtdIns-3-P); GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005737 - cytoplasm [Evidence TAS] [PMID 9245780]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0005882 - intermediate filament [Evidence TAS] [PMID 9891785]; GO_function: GO:0035091 - phosphatidylinositol binding [Evidence IEA]; GO_function: GO:0032266 - phosphatidylinositol-3-phosphate binding [Evidence IDA] [PMID 11557775]; GO_function: GO:0005200 - structural constituent of cytoskeleton [Evidence TAS] [PMID 9891785]; GO_process: GO:0000001 - mitochondrion inheritance [Evidence IDA] [PMID 9245780]; GO_process: GO:0007005 - mitochondrion organization [Evidence TAS] [PMID 9891785]; GO_process: GO:0007097 - nuclear migration [Evidence TAS] [PMID 9891785]; GO_process: GO:0038032 - termination of G-protein coupled receptor signaling pathway [Evidence IEA]; Mdm1p 1796435 MDM1 30037398 MDM1 Sugiyamaella lignohabitans Mdm1p XP_018736700.1 1792740 R 796027 CDS AWJ20_5185 30037399 complement(1806064..1806567) D 1 NC_031673.1 uncharacterized protein 1806567 30037399 AWJ20_5185 Sugiyamaella lignohabitans uncharacterized protein XP_018736701.1 1806064 R 796027 CDS AWJ20_5186 30037400 complement(1806970..1807602) D 1 NC_031673.1 Protein serine/threonine kinase; essential for cell wall remodeling during growth; localized to sites of polarized growth and the mother-daughter bud neck; homolog of the alpha, beta, and gamma isoforms of mammalian protein kinase C (PKC); GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11545731]; GO_component: GO:0005856 - cytoskeleton [Evidence IDA] [PMID 15910746]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11545731]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 16622836]; GO_component: GO:0032165 - prospore septin filament array [Evidence IDA] [PMID 24390141]; GO_component: GO:0030427 - site of polarized growth [Evidence IDA] [PMID 10893184]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0004697 - protein kinase C activity [Evidence IEA]; GO_function: GO:0004697 - protein kinase C activity [Evidence IDA] [PMID 8207005]; GO_function: GO:0004672 - protein kinase activity [Evidence IEA]; GO_function: GO:0004674 - protein serine/threonine kinase activity [Evidence IEA,IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016772 - transferase activity, transferring phosphorus-containing groups [Evidence IEA]; GO_process: GO:0007015 - actin filament organization [Evidence IGI] [PMID 12810699]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0033962 - cytoplasmic mRNA processing body assembly [Evidence IMP] [PMID 21163942]; GO_process: GO:0035556 - intracellular signal transduction [Evidence IEA]; GO_process: GO:0035556 - intracellular signal transduction [Evidence IMP] [PMID 7874200]; GO_process: GO:0030242 - peroxisome degradation [Evidence IMP] [PMID 20385774]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; GO_process: GO:0006468 - protein phosphorylation [Evidence IEA]; GO_process: GO:0006468 - protein phosphorylation [Evidence IDA] [PMID 8207005]; GO_process: GO:0060237 - regulation of fungal-type cell wall organization [Evidence IMP] [PMID 7874200]; GO_process: GO:0060211 - regulation of nuclear-transcribed mRNA poly(A) tail shortening [Evidence IMP] [PMID 21163942]; GO_process: GO:0007165 - signal transduction [Evidence IEA]; GO_process: GO:0007165 - signal transduction [Evidence IMP] [PMID 7874200]; protein kinase C 1807602 PKC1 30037400 PKC1 Sugiyamaella lignohabitans protein kinase C XP_018736702.1 1806970 R 796027 CDS AWJ20_5187 30037401 complement(1808456..1812679) D 1 NC_031673.1 Subunit of the inner ring of the nuclear pore complex (NPC); contributes to NPC organization and nucleocytoplasmic transport; homologous to human NUP188; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0031965 - nuclear membrane [Evidence IEA]; GO_component: GO:0005643 - nuclear pore [Evidence IEA,IEA]; GO_component: GO:0005643 - nuclear pore [Evidence IDA] [PMID 10684247]; GO_component: GO:0044611 - nuclear pore inner ring [Evidence IDA] [PMID 18046406]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_function: GO:0017056 - structural constituent of nuclear pore [Evidence IGI] [PMID 16361228]; GO_function: GO:0017056 - structural constituent of nuclear pore [Evidence IGI] [PMID 8682855]; GO_process: GO:0031990 - mRNA export from nucleus in response to heat stress [Evidence IMP] [PMID 18258809]; GO_process: GO:0051028 - mRNA transport [Evidence IEA]; GO_process: GO:0006999 - nuclear pore organization [Evidence IGI,IMP] [PMID 8682855]; GO_process: GO:0006606 - protein import into nucleus [Evidence IGI] [PMID 16361228]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Nup188p 1812679 NUP188 30037401 NUP188 Sugiyamaella lignohabitans Nup188p XP_018736703.1 1808456 R 796027 CDS AWJ20_5188 30037402 complement(1814194..1814796) D 1 NC_031673.1 uncharacterized protein 1814796 30037402 AWJ20_5188 Sugiyamaella lignohabitans uncharacterized protein XP_018736704.1 1814194 R 796027 CDS AWJ20_5189 30037403 1815781..1816899 D 1 NC_031673.1 FAD-dependent oxidoreductase, putative 1816899 30037403 AWJ20_5189 Sugiyamaella lignohabitans FAD-dependent oxidoreductase, putative XP_018736705.1 1815781 D 796027 CDS AWJ20_5190 30037405 complement(1817142..1817780) D 1 NC_031673.1 Subunit D of the V1 peripheral membrane domain of V-ATPase; part of the electrogenic proton pump found throughout the endomembrane system; plays a role in the coupling of proton transport and ATP hydrolysis; the V1 peripheral membrane domain of the vacuolar H+-ATPase (V-ATPase) has eight subunits; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence TAS] [PMID 11717306]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0000221 - vacuolar proton-transporting V-type ATPase, V1 domain [Evidence TAS] [PMID 10224039]; GO_component: GO:0000221 - vacuolar proton-transporting V-type ATPase, V1 domain [Evidence TAS] [PMID 9442887]; GO_function: GO:0042626 - ATPase activity, coupled to transmembrane movement of substances [Evidence IEA]; GO_function: GO:0046961 - proton-transporting ATPase activity, rotational mechanism [Evidence TAS] [PMID 10224039]; GO_function: GO:0046961 - proton-transporting ATPase activity, rotational mechanism [Evidence TAS] [PMID 9442887]; GO_process: GO:0006811 - ion transport [Evidence IEA]; GO_process: GO:0015992 - proton transport [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0007035 - vacuolar acidification [Evidence TAS] [PMID 10224039]; GO_process: GO:0007035 - vacuolar acidification [Evidence TAS] [PMID 9442887]; H(+)-transporting V1 sector ATPase subunit D 1817780 VMA8 30037405 VMA8 Sugiyamaella lignohabitans H(+)-transporting V1 sector ATPase subunit D XP_018736706.1 1817142 R 796027 CDS AWJ20_5191 30037406 join(1820562..1820744,1820813..1826050) D 1 NC_031673.1 Urea amidolyase; contains both urea carboxylase and allophanate hydrolase activities, degrades urea to CO2 and NH3; expression sensitive to nitrogen catabolite repression and induced by allophanate, an intermediate in allantoin degradation; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004039 - allophanate hydrolase activity [Evidence IEA]; GO_function: GO:0004039 - allophanate hydrolase activity [Evidence IMP] [PMID 6105114]; GO_function: GO:0004075 - biotin carboxylase activity [Evidence IEA]; GO_function: GO:0016884 - carbon-nitrogen ligase activity, with glutamine as amido-N-donor [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016874 - ligase activity [Evidence IEA,IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0003755 - peptidyl-prolyl cis-trans isomerase activity [Evidence IEA]; GO_function: GO:0004847 - urea carboxylase activity [Evidence IEA]; GO_function: GO:0004847 - urea carboxylase activity [Evidence IMP] [PMID 6105114]; GO_process: GO:0000256 - allantoin catabolic process [Evidence TAS] [PMID 1938916]; GO_process: GO:0006525 - arginine metabolic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA,IEA]; GO_process: GO:0006457 - protein folding [Evidence IEA]; GO_process: GO:0000413 - protein peptidyl-prolyl isomerization [Evidence IEA]; GO_process: GO:0043419 - urea catabolic process [Evidence IEA]; GO_process: GO:0043419 - urea catabolic process [Evidence IMP] [PMID 6105114]; bifunctional urea carboxylase/allophanate hydrolase 1826050 DUR1,2 30037406 DUR1,2 Sugiyamaella lignohabitans bifunctional urea carboxylase/allophanate hydrolase XP_018736707.1 1820562 D 796027 CDS AWJ20_5192 30037407 complement(1826378..1827538) D 1 NC_031673.1 Subunit of PPCDC and CoA-SPC complexes involved in CoA biosynthesis; subunits of the phosphopantothenoylcysteine decarboxylase (PPCDC) complex are: Cab3p, Sis2p, Vhs3p, while the subunits of the CoA-synthesizing protein complex (CoA-SPC) are: Cab2p, Cab3p, Cab4p, and Cab5p as well as Sis2p and Vhs3p; null mutant lethality is complemented by E. coli coaBC; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14690591]; GO_component: GO:0071513 - phosphopantothenoylcysteine decarboxylase complex [Evidence IDA] [PMID 19915539]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0004633 - phosphopantothenoylcysteine decarboxylase activity [Evidence ISS] [PMID 10592175]; GO_function: GO:0004633 - phosphopantothenoylcysteine decarboxylase activity [Evidence ISS] [PMID 14690591]; GO_function: GO:0004633 - phosphopantothenoylcysteine decarboxylase activity [Evidence IDA,IMP] [PMID 19915539]; GO_function: GO:0017076 - purine nucleotide binding [Evidence ISS] [PMID 7705654]; GO_process: GO:0015937 - coenzyme A biosynthetic process [Evidence IEA]; GO_process: GO:0015937 - coenzyme A biosynthetic process [Evidence ISS] [PMID 10592175]; GO_process: GO:0015937 - coenzyme A biosynthetic process [Evidence ISS] [PMID 14690591]; GO_process: GO:0015937 - coenzyme A biosynthetic process [Evidence IGI] [PMID 19266201]; GO_process: GO:0009651 - response to salt stress [Evidence IGI] [PMID 8923737]; phosphopantothenoylcysteine decarboxylase complex subunit CAB3 1827538 CAB3 30037407 CAB3 Sugiyamaella lignohabitans phosphopantothenoylcysteine decarboxylase complex subunit CAB3 XP_018736708.1 1826378 R 796027 CDS AWJ20_5193 30037408 complement(1832043..1832771) D 1 NC_031673.1 uncharacterized protein 1832771 30037408 AWJ20_5193 Sugiyamaella lignohabitans uncharacterized protein XP_018736709.1 1832043 R 796027 CDS AWJ20_5194 30037409 complement(1833688..1838067) D 1 NC_031673.1 Vacuolar protein with a possible role in sequestering heavy metals; has similarity to the type V P-type ATPase Spf1p; homolog of human ATP13A2 (PARK9), mutations in which are associated with Parkinson disease and Kufor-Rakeb syndrome; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 19001347]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 19182805]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0016887 - ATPase activity [Evidence IEA]; GO_function: GO:0019829 - cation-transporting ATPase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA,IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0006812 - cation transport [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; Ypk9p 1838067 YPK9 30037409 YPK9 Sugiyamaella lignohabitans Ypk9p XP_018736710.1 1833688 R 796027 CDS AWJ20_5195 30037410 complement(1838946..1840478) D 1 NC_031673.1 uncharacterized protein 1840478 30037410 AWJ20_5195 Sugiyamaella lignohabitans uncharacterized protein XP_018736711.1 1838946 R 796027 CDS AWJ20_5196 30037411 1841848..1843425 D 1 NC_031673.1 C-22 sterol desaturase; a cytochrome P450 enzyme that catalyzes the formation of the C-22(23) double bond in the sterol side chain in ergosterol biosynthesis; may be a target of azole antifungal drugs; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 14562095]; GO_function: GO:0000249 - C-22 sterol desaturase activity [Evidence IDA] [PMID 8543054]; GO_function: GO:0020037 - heme binding [Evidence IEA]; GO_function: GO:0005506 - iron ion binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004497 - monooxygenase activity [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [Evidence IEA]; GO_process: GO:0006696 - ergosterol biosynthetic process [Evidence IDA] [PMID 8543054]; GO_process: GO:0006696 - ergosterol biosynthetic process [Evidence IMP] [PMID 8635732]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0006694 - steroid biosynthetic process [Evidence IEA]; GO_process: GO:0008202 - steroid metabolic process [Evidence IEA]; GO_process: GO:0016126 - sterol biosynthetic process [Evidence IEA,IEA]; C-22 sterol desaturase 1843425 ERG5 30037411 ERG5 Sugiyamaella lignohabitans C-22 sterol desaturase XP_018736712.1 1841848 D 796027 CDS AWJ20_5197 30037412 complement(1845245..1847062) D 1 NC_031673.1 zf-C2H2 type zinc finger protein 1847062 30037412 AWJ20_5197 Sugiyamaella lignohabitans zf-C2H2 type zinc finger protein XP_018736713.1 1845245 R 796027 CDS AWJ20_5198 30037413 complement(1847615..1849027) D 1 NC_031673.1 High affinity nicotinic acid plasma membrane permease; responsible for uptake of low levels of nicotinic acid; expression of the gene increases in the absence of extracellular nicotinic acid or para-aminobenzoate (PABA); GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0005887 - integral component of plasma membrane [Evidence ISS] [PMID 9678606]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0015663 - nicotinamide mononucleotide transmembrane transporter activity [Evidence IMP] [PMID 10869563]; GO_process: GO:0015890 - nicotinamide mononucleotide transport [Evidence IEP,IMP] [PMID 10869563]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Tna1p 1849027 TNA1 30037413 TNA1 Sugiyamaella lignohabitans Tna1p XP_018736714.1 1847615 R 796027 CDS AWJ20_5199 30037414 complement(1850007..1851191) D 1 NC_031673.1 Fe(II)-dependent sulfonate/alpha-ketoglutarate dioxygenase; involved in sulfonate catabolism for use as a sulfur source; contains sequence that resembles a J domain (typified by the E. coli DnaJ protein); induced by sulphur starvation; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0051213 - dioxygenase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0000907 - sulfonate dioxygenase activity [Evidence IDA] [PMID 10482536]; GO_process: GO:0046306 - alkanesulfonate catabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0044273 - sulfur compound catabolic process [Evidence IMP] [PMID 10482536]; Jlp1p 1851191 JLP1 30037414 JLP1 Sugiyamaella lignohabitans Jlp1p XP_018736715.1 1850007 R 796027 CDS AWJ20_5200 30037417 complement(1852165..1853433) D 1 NC_031673.1 Protein that may act as a chaperone for cytochrome c oxidase subunits; conserved protein; may act as a chaperone in the degradation of misfolded or unassembled cytochrome c oxidase subunits; localized to matrix face of the mitochondrial inner membrane; member of the AAA family but lacks a protease domain; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IDA] [PMID 17430883]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0034599 - cellular response to oxidative stress [Evidence IMP] [PMID 17430883]; GO_process: GO:0006515 - misfolded or incompletely synthesized protein catabolic process [Evidence IMP] [PMID 17430883]; GO_process: GO:0016558 - protein import into peroxisome matrix [Evidence IMP] [PMID 19118449]; Afg1p 1853433 AFG1 30037417 AFG1 Sugiyamaella lignohabitans Afg1p XP_018736716.1 1852165 R 796027 CDS AWJ20_5201 30037418 1855682..1857529 D 1 NC_031673.1 uncharacterized protein 1857529 30037418 AWJ20_5201 Sugiyamaella lignohabitans uncharacterized protein XP_018736717.1 1855682 D 796027 CDS AWJ20_5202 30037419 1859091..1859846 D 1 NC_031673.1 Component of the septin ring that is required for cytokinesis; septins are GTP-binding proteins that assemble into rod-like hetero-oligomers that can associate with other rods to form filaments; septin rings at the mother-bud neck act as scaffolds for recruiting cell division factors and as barriers to prevent diffusion of specific proteins between mother and daughter cells; GO_component: GO:0005619 - ascospore wall [Evidence IDA] [PMID 8636217]; GO_component: GO:0005935 - cellular bud neck [Evidence IEA]; GO_component: GO:0000144 - cellular bud neck septin ring [Evidence IDA] [PMID 1934633]; GO_component: GO:0005881 - cytoplasmic microtubule [Evidence IDA] [PMID 18826657]; GO_component: GO:0001400 - mating projection base [Evidence IDA] [PMID 8791410]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 19053807]; GO_component: GO:0072687 - meiotic spindle [Evidence IDA] [PMID 18826657]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005628 - prospore membrane [Evidence IDA] [PMID 18826657]; GO_component: GO:0005628 - prospore membrane [Evidence IDA] [PMID 24390141]; GO_component: GO:0031105 - septin complex [Evidence IEA]; GO_component: GO:0031105 - septin complex [Evidence IDA] [PMID 18550837]; GO_component: GO:0031105 - septin complex [Evidence IPI] [PMID 9813094]; GO_component: GO:0032160 - septin filament array [Evidence IDA] [PMID 15282341]; GO_component: GO:0005876 - spindle microtubule [Evidence IDA] [PMID 18826657]; GO_function: GO:0005545 - 1-phosphatidylinositol binding [Evidence IDA] [PMID 12665577]; GO_function: GO:0005525 - GTP binding [Evidence IEA,IEA]; GO_function: GO:0005525 - GTP binding [Evidence IDA] [PMID 12665577]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0005198 - structural molecule activity [Evidence IDA] [PMID 18550837]; GO_process: GO:0007049 - cell cycle [Evidence IEA,IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0030011 - maintenance of cell polarity [Evidence IC] [PMID 10882120]; GO_process: GO:0000281 - mitotic cytokinesis [Evidence IMP] [PMID 4950437]; GO_process: GO:0045860 - positive regulation of protein kinase activity [Evidence IDA] [PMID 14527412]; septin CDC11 1859846 CDC11 30037419 CDC11 Sugiyamaella lignohabitans septin CDC11 XP_018736718.1 1859091 D 796027 CDS AWJ20_5203 30037420 complement(1860082..1861047) D 1 NC_031673.1 uncharacterized protein 1861047 30037420 AWJ20_5203 Sugiyamaella lignohabitans uncharacterized protein XP_018736719.1 1860082 R 796027 CDS AWJ20_5204 30037421 complement(1861941..1862891) D 1 NC_031673.1 Protein proposed to be involved in vacuolar functions; mutant shows defect in CPY processing and defects in vacuolar morphology; has similarity to oxidoreductases, found in lipid particles; required for replication of Brome mosaic virus in S. cerevisiae, a model system for studying replication of positive-strand RNA viruses in their natural hosts; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0005811 - lipid particle [Evidence IEA,IEA]; GO_component: GO:0005811 - lipid particle [Evidence IDA] [PMID 14562095]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence ISS] [PMID 8972580]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; GO_process: GO:0006624 - vacuolar protein processing [Evidence IMP] [PMID 21912603]; GO_process: GO:0007033 - vacuole organization [Evidence IMP] [PMID 21912603]; Env9p 1862891 ENV9 30037421 ENV9 Sugiyamaella lignohabitans Env9p XP_018736720.1 1861941 R 796027 CDS AWJ20_5205 30037422 complement(1869293..1871614) D 1 NC_031673.1 Exo-1,3-beta-glucanase; involved in cell wall beta-glucan assembly; may be anchored to the plasma membrane via a glycosylphosphatidylinositol (GPI) anchor; GO_component: GO:0031225 - anchored component of membrane [Evidence IEA]; GO_component: GO:0009277 - fungal-type cell wall [Evidence IDA] [PMID 7875558]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_function: GO:0004338 - glucan exo-1,3-beta-glucosidase activity [Evidence IEA]; GO_function: GO:0004338 - glucan exo-1,3-beta-glucosidase activity [Evidence IDA] [PMID 7875558]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016798 - hydrolase activity, acting on glycosyl bonds [Evidence IEA]; GO_function: GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]; GO_process: GO:0005975 - carbohydrate metabolic process [Evidence IEA]; GO_process: GO:0031505 - fungal-type cell wall organization [Evidence IC] [PMID 7875558]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; Exg2p 1871614 EXG2 30037422 EXG2 Sugiyamaella lignohabitans Exg2p XP_018736721.1 1869293 R 796027 CDS AWJ20_5206 30037423 complement(1874709..1876517) D 1 NC_031673.1 uncharacterized protein 1876517 30037423 AWJ20_5206 Sugiyamaella lignohabitans uncharacterized protein XP_018736722.1 1874709 R 796027 CDS AWJ20_5207 30037424 join(1881191..1883932,1883996..1886689) D 1 NC_031673.1 Myosin-like protein associated with the nuclear envelope; connects the nuclear pore complex with the nuclear interior; involved with Tel1p in telomere length control; involved with Pml1p and Pml39p in nuclear retention of unspliced mRNAs; MLP1 has a paralog, MLP2, that arose from the whole genome duplication; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0005635 - nuclear envelope [Evidence IDA] [PMID 10085285]; GO_component: GO:0005643 - nuclear pore [Evidence IEA]; GO_component: GO:0044615 - nuclear pore nuclear basket [Evidence IDA] [PMID 24152732]; GO_component: GO:0005654 - nucleoplasm [Evidence IDA] [PMID 10085285]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IPI] [PMID 15692572]; GO_component: GO:0005816 - spindle pole body [Evidence IDA] [PMID 16027220]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_function: GO:0043021 - ribonucleoprotein complex binding [Evidence IGI,IPI] [PMID 15692572]; GO_process: GO:0006281 - DNA repair [Evidence IEA]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0051028 - mRNA transport [Evidence IEA]; GO_process: GO:1901925 - negative regulation of protein import into nucleus during spindle assembly checkpoint [Evidence IGI] [PMID 23177738]; GO_process: GO:0071048 - nuclear retention of unspliced pre-mRNA at the site of transcription [Evidence IGI,IMP] [PMID 14718167]; GO_process: GO:0016973 - poly(A)+ mRNA export from nucleus [Evidence IMP] [PMID 21036941]; GO_process: GO:0006606 - protein import into nucleus [Evidence IEA]; GO_process: GO:0006606 - protein import into nucleus [Evidence IGI] [PMID 10085285]; GO_process: GO:0090204 - protein localization to nuclear pore [Evidence IMP] [PMID 19933151]; GO_process: GO:0034398 - telomere tethering at nuclear periphery [Evidence IGI] [PMID 10638763]; GO_process: GO:0090203 - transcriptional activation by promoter-terminator looping [Evidence IMP] [PMID 19933151]; GO_process: GO:0006810 - transport [Evidence IEA]; Mlp1p 1886689 MLP1 30037424 MLP1 Sugiyamaella lignohabitans Mlp1p XP_018736723.1 1881191 D 796027 CDS AWJ20_5208 30037425 complement(1886804..1889521) D 1 NC_031673.1 Protein involved in GPI anchor synthesis; multimembrane-spanning protein that localizes to the endoplasmic reticulum; highly conserved among eukaryotes; GPI stands for glycosylphosphatidylinositol; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 10069808]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA,IEA]; GO_component: GO:0009277 - fungal-type cell wall [Evidence IDA] [PMID 12023081]; GO_component: GO:0000324 - fungal-type vacuole [Evidence IDA] [PMID 10514566]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0051377 - mannose-ethanolamine phosphotransferase activity [Evidence IMP] [PMID 16704983]; GO_function: GO:0051377 - mannose-ethanolamine phosphotransferase activity [Evidence IMP] [PMID 17311586]; GO_function: GO:0016740 - transferase activity [Evidence IEA,IEA]; GO_process: GO:0015867 - ATP transport [Evidence IDA] [PMID 12807869]; GO_process: GO:0006506 - GPI anchor biosynthetic process [Evidence IEA,IEA,IEA]; GO_process: GO:0006506 - GPI anchor biosynthetic process [Evidence IDA] [PMID 12023081]; GO_process: GO:0006506 - GPI anchor biosynthetic process [Evidence IMP] [PMID 16704983]; GO_process: GO:0006506 - GPI anchor biosynthetic process [Evidence IMP] [PMID 17311586]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; Mcd4p 1889521 MCD4 30037425 MCD4 Sugiyamaella lignohabitans Mcd4p XP_018736724.1 1886804 R 796027 CDS AWJ20_5209 30037426 complement(join(1889982..1892362,1892485..1892521)) D 1 NC_031673.1 type II HSP40 co-chaperone SIS1 1892521 SIS1 30037426 SIS1 Sugiyamaella lignohabitans type II HSP40 co-chaperone SIS1 XP_018736725.1 1889982 R 796027 CDS AWJ20_5210 30037428 1897418..1898851 D 1 NC_031673.1 weak similarity to sphingosine kinase/eukaryotic diacylglycerol kinase involved in Protein Kinase C activation; similar to C terminus of predicted N. crassa protein (NCU06337.1); allele of CaO19.12149; putative sphingosine kinase-like protein 1898851 DGK1 30037428 DGK1 Sugiyamaella lignohabitans putative sphingosine kinase-like protein XP_018736726.1 1897418 D 796027 CDS AWJ20_5211 30037429 1899589..1900881 D 1 NC_031673.1 uncharacterized protein 1900881 30037429 AWJ20_5211 Sugiyamaella lignohabitans uncharacterized protein XP_018736727.1 1899589 D 796027 CDS AWJ20_5212 30037430 1902110..1902886 D 1 NC_031673.1 Essential evolutionarily conserved nucleolar protein; necessary for biogenesis of 60S ribosomal subunits and for processing of pre-rRNAs to mature rRNA; associated with several distinct 66S pre-ribosomal particles; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 11583614]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 17443350]; GO_component: GO:0030688 - preribosome, small subunit precursor [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006364 - rRNA processing [Evidence IEA,IEA]; GO_process: GO:0006364 - rRNA processing [Evidence IMP] [PMID 3549696]; Rrp1p 1902886 RRP1 30037430 RRP1 Sugiyamaella lignohabitans Rrp1p XP_018736728.1 1902110 D 796027 CDS AWJ20_5213 30037431 complement(1903203..1904081) D 1 NC_031673.1 uncharacterized protein 1904081 30037431 AWJ20_5213 Sugiyamaella lignohabitans uncharacterized protein XP_018736729.1 1903203 R 796027 CDS AWJ20_5214 30037432 1906158..1908227 D 1 NC_031673.1 Proton-coupled oligopeptide transporter of the plasma membrane; also transports glutathione and phytochelatin; member of the OPT family; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0005887 - integral component of plasma membrane [Evidence IMP,ISS] [PMID 10788431]; GO_component: GO:0005887 - integral component of plasma membrane [Evidence IDA] [PMID 19496824]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_function: GO:0015198 - oligopeptide transporter activity [Evidence IMP] [PMID 10652283]; GO_function: GO:0005427 - proton-dependent oligopeptide secondary active transmembrane transporter activity [Evidence IDA] [PMID 16149917]; GO_process: GO:0006857 - oligopeptide transport [Evidence IDA] [PMID 16149917]; GO_process: GO:0015833 - peptide transport [Evidence IEA]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006790 - sulfur compound metabolic process [Evidence IEP] [PMID 11862495]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; oligopeptide transporter OPT1 1908227 OPT1 30037432 OPT1 Sugiyamaella lignohabitans oligopeptide transporter OPT1 XP_018736730.1 1906158 D 796027 CDS AWJ20_5215 30037433 complement(1908316..1909158) D 1 NC_031673.1 NADPH-dependent alpha-keto amide reductase; reduces aromatic alpha-keto amides, aliphatic alpha-keto esters, and aromatic alpha-keto esters; member of the aldo-keto reductase (AKR) family; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 16622836]; GO_function: GO:0004032 - alditol:NADP+ 1-oxidoreductase activity [Evidence IDA,ISS] [PMID 11306085]; GO_function: GO:0004033 - aldo-keto reductase (NADP) activity [Evidence IDA] [PMID 17140678]; GO_function: GO:0051268 - alpha-keto amide reductase activity [Evidence IDA] [PMID 15564669]; GO_function: GO:0051269 - alpha-keto ester reductase activity [Evidence IDA] [PMID 15564669]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_process: GO:0043603 - cellular amide metabolic process [Evidence IDA] [PMID 15564669]; GO_process: GO:0006725 - cellular aromatic compound metabolic process [Evidence IDA] [PMID 16268655]; GO_process: GO:0042180 - cellular ketone metabolic process [Evidence IDA] [PMID 17140678]; GO_process: GO:0034599 - cellular response to oxidative stress [Evidence IGI] [PMID 17919749]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; aldo-keto reductase superfamily protein 1909158 30037433 AWJ20_5215 Sugiyamaella lignohabitans aldo-keto reductase superfamily protein XP_018736731.1 1908316 R 796027 CDS AWJ20_5216 30037434 1910000..1911424 D 1 NC_031673.1 Acetyltransferase; catalyzes trichothecene 3-O-acetylation, suggesting a possible role in trichothecene biosynthesis; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016746 - transferase activity, transferring acyl groups [Evidence IEA]; GO_function: GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups [Evidence IEA]; GO_function: GO:0045462 - trichothecene 3-O-acetyltransferase activity [Evidence IMP] [PMID 12478589]; GO_process: GO:0043387 - mycotoxin catabolic process [Evidence IMP] [PMID 12478589]; Ayt1p 1911424 AYT1 30037434 AYT1 Sugiyamaella lignohabitans Ayt1p XP_018736732.1 1910000 D 796027 CDS AWJ20_5218 30037436 1912246..1913682 D 1 NC_031673.1 Protein that modulates the efficiency of translation termination; interacts with translation release factors eRF1 (Sup45p) and eRF3 (Sup35p) in vitro, contains a zinc finger domain characteristic of the TRIAD class of proteins; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0006417 - regulation of translation [Evidence IEA]; GO_process: GO:0006449 - regulation of translational termination [Evidence IMP] [PMID 11570975]; Itt1p 1913682 ITT1 30037436 ITT1 Sugiyamaella lignohabitans Itt1p XP_018736733.1 1912246 D 796027 CDS AWJ20_5219 30037437 1915556..1918030 D 1 NC_031673.1 U1 snRNP protein involved in splicing; interacts with the branchpoint-binding protein during the formation of the second commitment complex; GO_component: GO:0005685 - U1 snRNP [Evidence IDA] [PMID 9630245]; GO_component: GO:0071004 - U2-type prespliceosome [Evidence IDA] [PMID 16618970]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IMP] [PMID 15020406]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IDA] [PMID 8622699]; GO_process: GO:0008380 - RNA splicing [Evidence IEA]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0000398 - mRNA splicing, via spliceosome [Evidence IDA] [PMID 8622699]; Prp40p 1918030 PRP40 30037437 PRP40 Sugiyamaella lignohabitans Prp40p XP_018736734.1 1915556 D 796027 CDS AWJ20_5220 30037439 1919705..1921246 D 1 NC_031673.1 Ubiquitin-specific protease; situated in the base subcomplex of the 26S proteasome, releases free ubiquitin from branched polyubiquitin chains; negatively regulates degradation of ubiquitinated proteins by the proteasome; works in opposition to Hul5p polyubiquitin elongation activity; mutant has aneuploidy tolerance; GO_component: GO:0000502 - proteasome complex [Evidence IPI] [PMID 12408819]; GO_component: GO:0005838 - proteasome regulatory particle [Evidence IPI] [PMID 11029046]; GO_function: GO:0008234 - cysteine-type peptidase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_function: GO:0004843 - ubiquitin-specific protease activity [Evidence IDA,IMP] [PMID 12408819]; GO_function: GO:0004843 - ubiquitin-specific protease activity [Evidence IDA,IMP] [PMID 17018280]; GO_process: GO:1901799 - negative regulation of proteasomal protein catabolic process [Evidence IMP] [PMID 17018280]; GO_process: GO:0016579 - protein deubiquitination [Evidence IMP] [PMID 12408819]; GO_process: GO:0016579 - protein deubiquitination [Evidence IGI] [PMID 14581483]; GO_process: GO:0006508 - proteolysis [Evidence IEA]; GO_process: GO:0006511 - ubiquitin-dependent protein catabolic process [Evidence IEA]; Ubp6p 1921246 UBP6 30037439 UBP6 Sugiyamaella lignohabitans Ubp6p XP_018736735.1 1919705 D 796027 CDS AWJ20_5221 30037440 complement(1921470..1921928) D 1 NC_031673.1 Component of the MICOS complex; MICOS (formerly MINOS or MitOS) is a mitochondrial inner membrane complex that extends into the intermembrane space and has a role in the maintenance of crista junctions, inner membrane architecture, and formation of contact sites to the outer membrane; Mic19p is peripheral to the inner membrane; GO_component: GO:0061617 - MICOS complex [Evidence IDA] [PMID 21944719]; GO_component: GO:0061617 - MICOS complex [Evidence IDA] [PMID 21987634]; GO_component: GO:0061617 - MICOS complex [Evidence IDA] [PMID 22009199]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0044284 - mitochondrial crista junction [Evidence IDA] [PMID 22009199]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0042407 - cristae formation [Evidence IMP] [PMID 21944719]; GO_process: GO:0042407 - cristae formation [Evidence IMP] [PMID 21987634]; GO_process: GO:0042407 - cristae formation [Evidence IMP] [PMID 22009199]; Mic19p 1921928 MIC19 30037440 MIC19 Sugiyamaella lignohabitans Mic19p XP_018736736.1 1921470 R 796027 CDS AWJ20_5222 30037441 complement(1923377..1924099) D 1 NC_031673.1 uncharacterized protein 1924099 30037441 AWJ20_5222 Sugiyamaella lignohabitans uncharacterized protein XP_018736737.1 1923377 R 796027 CDS AWJ20_5223 30037442 1926166..1927194 D 1 NC_031673.1 Mitochondrial alcohol dehydrogenase isozyme III; involved in the shuttling of mitochondrial NADH to the cytosol under anaerobic conditions and ethanol production; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA]; GO_component: GO:0005759 - mitochondrial matrix [Evidence IDA] [PMID 3550419]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0004022 - alcohol dehydrogenase (NAD) activity [Evidence IEA]; GO_function: GO:0004022 - alcohol dehydrogenase (NAD) activity [Evidence IDA] [PMID 3550419]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0006116 - NADH oxidation [Evidence IDA] [PMID 3546317]; GO_process: GO:0000947 - amino acid catabolic process to alcohol via Ehrlich pathway [Evidence IGI] [PMID 12499363]; GO_process: GO:0006113 - fermentation [Evidence ISS] [PMID 3550419]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; alcohol dehydrogenase ADH3 1927194 ADH3 30037442 ADH3 Sugiyamaella lignohabitans alcohol dehydrogenase ADH3 XP_018736738.1 1926166 D 796027 CDS AWJ20_5224 30037443 1931245..1933992 D 1 NC_031673.1 XP_962611|transcriptional activator xlnR [Neurospora crassa OR74A]; transcriptional activator xlnR 1933992 30037443 AWJ20_5224 Sugiyamaella lignohabitans transcriptional activator xlnR XP_018736739.1 1931245 D 796027 CDS AWJ20_5225 30037444 complement(1934138..1935235) D 1 NC_031673.1 Vacuolar carboxypeptidase Y (proteinase C, CPY); broad-specificity C-terminal exopeptidase involved in non-specific protein degradation in the vacuole; member of the serine carboxypeptidase family; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 11914276]; GO_component: GO:0000324 - fungal-type vacuole [Evidence IDA] [PMID 14562095]; GO_component: GO:0000324 - fungal-type vacuole [Evidence IDA] [PMID 23708375]; GO_component: GO:0005773 - vacuole [Evidence IEA,IEA,IEA]; GO_function: GO:0004180 - carboxypeptidase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_function: GO:0004185 - serine-type carboxypeptidase activity [Evidence IEA]; GO_function: GO:0004185 - serine-type carboxypeptidase activity [Evidence IDA,IMP] [PMID 8679540]; GO_process: GO:0046938 - phytochelatin biosynthetic process [Evidence IDA,IMP] [PMID 17408619]; GO_process: GO:0006508 - proteolysis [Evidence IEA,IEA]; GO_process: GO:0007039 - vacuolar protein catabolic process [Evidence TAS] [PMID 8789256]; carboxypeptidase C PRC1 1935235 PRC1 30037444 PRC1 Sugiyamaella lignohabitans carboxypeptidase C PRC1 XP_018736740.1 1934138 R 796027 CDS AWJ20_5226 30037445 complement(1935904..1936704) D 1 NC_031673.1 SNAP receptor PEP12 1936704 PEP12 30037445 PEP12 Sugiyamaella lignohabitans SNAP receptor PEP12 XP_018736741.1 1935904 R 796027 CDS AWJ20_5227 30037446 complement(1937331..1940384) D 1 NC_031673.1 Catalytic subunit of the DNA polymerase I alpha-primase complex; required for the initiation of DNA replication during mitotic DNA synthesis and premeiotic DNA synthesis; GO_component: GO:0005658 - alpha DNA polymerase:primase complex [Evidence IDA] [PMID 22593576]; GO_component: GO:0005658 - alpha DNA polymerase:primase complex [Evidence IDA] [PMID 3888995]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005657 - replication fork [Evidence IDA] [PMID 15773893]; GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA,IEA,IEA]; GO_function: GO:0003887 - DNA-directed DNA polymerase activity [Evidence IDA] [PMID 1704371]; GO_function: GO:0003887 - DNA-directed DNA polymerase activity [Evidence IDA] [PMID 3888995]; GO_function: GO:0003887 - DNA-directed DNA polymerase activity [Evidence IDA] [PMID 3907855]; GO_function: GO:0051536 - iron-sulfur cluster binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0001882 - nucleoside binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016779 - nucleotidyltransferase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006260 - DNA replication [Evidence IEA,IEA]; GO_process: GO:0006260 - DNA replication [Evidence IMP] [PMID 2651896]; GO_process: GO:0000076 - DNA replication checkpoint [Evidence IBA]; GO_process: GO:0006270 - DNA replication initiation [Evidence IC] [PMID 3888995]; GO_process: GO:0006269 - DNA replication, synthesis of RNA primer [Evidence IBA]; GO_process: GO:0006271 - DNA strand elongation involved in DNA replication [Evidence IBA]; GO_process: GO:0000731 - DNA synthesis involved in DNA repair [Evidence IMP] [PMID 2651896]; GO_process: GO:0006278 - RNA-dependent DNA replication [Evidence IDA] [PMID 17429354]; GO_process: GO:0006302 - double-strand break repair [Evidence IMP] [PMID 10025407]; GO_process: GO:0000734 - gene conversion at mating-type locus, DNA repair synthesis [Evidence IBA]; GO_process: GO:0006273 - lagging strand elongation [Evidence IC] [PMID 3888995]; GO_process: GO:0006139 - nucleobase-containing compound metabolic process [Evidence IEA]; GO_process: GO:0006279 - premeiotic DNA replication [Evidence IMP] [PMID 2651896]; DNA-directed DNA polymerase alpha catalytic subunit POL1 1940384 POL1 30037446 POL1 Sugiyamaella lignohabitans DNA-directed DNA polymerase alpha catalytic subunit POL1 XP_018736742.1 1937331 R 796027 CDS AWJ20_5228 30037447 complement(1941178..1941591) D 1 NC_031673.1 uncharacterized protein 1941591 30037447 AWJ20_5228 Sugiyamaella lignohabitans uncharacterized protein XP_018736743.1 1941178 R 796027 CDS AWJ20_5229 30037448 complement(1941980..1942939) D 1 NC_031673.1 uncharacterized protein 1942939 30037448 AWJ20_5229 Sugiyamaella lignohabitans uncharacterized protein XP_018736744.1 1941980 R 796027 CDS AWJ20_5233 30037453 complement(1945093..1946583) D 1 NC_031673.1 High affinity nicotinic acid plasma membrane permease; responsible for uptake of low levels of nicotinic acid; expression of the gene increases in the absence of extracellular nicotinic acid or para-aminobenzoate (PABA); GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0005887 - integral component of plasma membrane [Evidence ISS] [PMID 9678606]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0015663 - nicotinamide mononucleotide transmembrane transporter activity [Evidence IMP] [PMID 10869563]; GO_process: GO:0015890 - nicotinamide mononucleotide transport [Evidence IEP,IMP] [PMID 10869563]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Tna1p 1946583 TNA1 30037453 TNA1 Sugiyamaella lignohabitans Tna1p XP_018736745.1 1945093 R 796027 CDS AWJ20_5234 30037454 1947581..1948819 D 1 NC_031673.1 uncharacterized protein 1948819 30037454 AWJ20_5234 Sugiyamaella lignohabitans uncharacterized protein XP_018736746.1 1947581 D 796027 CDS AWJ20_5235 30037455 complement(1949070..1951544) D 1 NC_031673.1 Oligomeric mitochondrial matrix chaperone; cooperates with Ssc1p in mitochondrial thermotolerance after heat shock; able to prevent the aggregation of misfolded proteins as well as resolubilize protein aggregates; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA]; GO_component: GO:0005759 - mitochondrial matrix [Evidence IDA] [PMID 8413229]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016887 - ATPase activity [Evidence IDA,IMP] [PMID 11734006]; GO_function: GO:0051787 - misfolded protein binding [Evidence IDA] [PMID 7628444]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_process: GO:0034605 - cellular response to heat [Evidence IMP] [PMID 7628444]; GO_process: GO:0034605 - cellular response to heat [Evidence IGI,IMP] [PMID 8830768]; GO_process: GO:0000002 - mitochondrial genome maintenance [Evidence IGI] [PMID 7500331]; GO_process: GO:0042026 - protein refolding [Evidence IDA,IMP] [PMID 11734006]; GO_process: GO:0050821 - protein stabilization [Evidence IMP] [PMID 16460754]; GO_process: GO:0050821 - protein stabilization [Evidence IGI] [PMID 7628444]; GO_process: GO:0043335 - protein unfolding [Evidence IMP] [PMID 16460754]; GO_process: GO:0006950 - response to stress [Evidence IEA]; chaperone ATPase HSP78 1951544 HSP78 30037455 HSP78 Sugiyamaella lignohabitans chaperone ATPase HSP78 XP_018736747.1 1949070 R 796027 CDS AWJ20_5236 30037456 complement(1951989..1954046) D 1 NC_031673.1 pH sensor molecule, component of the RIM101 pathway; has a role in cell wall construction and alkaline pH response; is glycosylated and phosphorylated; interacts with Dfg16p and Rim9p to form a pH-sensing complex; localization to the plasma membrane is dependent on Dfg16p and Rim9p; has similarity to A. nidulans PalH; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 23019326]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0030437 - ascospore formation [Evidence IMP] [PMID 10821185]; GO_process: GO:0071469 - cellular response to alkalinity [Evidence IMP] [PMID 23019326]; GO_process: GO:0009272 - fungal-type cell wall biogenesis [Evidence IGI,IMP] [PMID 16524906]; GO_process: GO:0001403 - invasive growth in response to glucose limitation [Evidence IMP] [PMID 10821185]; Rim21p 1954046 RIM21 30037456 RIM21 Sugiyamaella lignohabitans Rim21p XP_018736748.1 1951989 R 796027 CDS AWJ20_5237 30037457 complement(1954660..1956675) D 1 NC_031673.1 Alpha-1,2-mannosyltransferase; responsible for addition of the first alpha-1,2-linked mannose to form the branches on the mannan backbone of oligosaccharides, localizes to an early Golgi compartment; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0005794 - Golgi apparatus [Evidence IDA] [PMID 9756928]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0000026 - alpha-1,2-mannosyltransferase activity [Evidence IMP] [PMID 9756928]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006486 - protein glycosylation [Evidence IEA,IEA]; GO_process: GO:0006486 - protein glycosylation [Evidence IMP] [PMID 9756928]; Mnn2p 1956675 MNN2 30037457 MNN2 Sugiyamaella lignohabitans Mnn2p XP_018736749.1 1954660 R 796027 CDS AWJ20_5238 30037458 1958266..1959093 D 1 NC_031673.1 Peroxisomal delta3,delta2-enoyl-CoA isomerase; hexameric protein that converts 3-hexenoyl-CoA to trans-2-hexenoyl-CoA, essential for the beta-oxidation of unsaturated fatty acids, oleate-induced; ECI1 has a paralog, DCI1, that arose from the whole genome duplication; GO_component: GO:0005777 - peroxisome [Evidence IEA,IEA]; GO_component: GO:0005777 - peroxisome [Evidence IDA] [PMID 9813046]; GO_component: GO:0005777 - peroxisome [Evidence IDA] [PMID 9837886]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0004165 - dodecenoyl-CoA delta-isomerase activity [Evidence IEA]; GO_function: GO:0004165 - dodecenoyl-CoA delta-isomerase activity [Evidence IDA,IMP] [PMID 9813046]; GO_function: GO:0004165 - dodecenoyl-CoA delta-isomerase activity [Evidence IDA,IMP] [PMID 9837886]; GO_function: GO:0016853 - isomerase activity [Evidence IEA]; GO_process: GO:0006635 - fatty acid beta-oxidation [Evidence IEA]; GO_process: GO:0006635 - fatty acid beta-oxidation [Evidence IDA] [PMID 9813046]; GO_process: GO:0006635 - fatty acid beta-oxidation [Evidence IDA] [PMID 9837886]; GO_process: GO:0006631 - fatty acid metabolic process [Evidence IEA]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; dodecenoyl-CoA isomerase 1959093 ECI1 30037458 ECI1 Sugiyamaella lignohabitans dodecenoyl-CoA isomerase XP_018736750.1 1958266 D 796027 CDS AWJ20_5239 30037459 complement(1959303..1960808) D 1 NC_031673.1 uncharacterized protein 1960808 30037459 AWJ20_5239 Sugiyamaella lignohabitans uncharacterized protein XP_018736751.1 1959303 R 796027 CDS AWJ20_5240 30037461 1961658..1962368 D 1 NC_031673.1 O-methyltransferase; catalyzes two different O-methylation steps in ubiquinone (Coenzyme Q) biosynthesis; component of a mitochondrial ubiquinone-synthesizing complex; phosphoprotein; GO_component: GO:0019898 - extrinsic component of membrane [Evidence IDA] [PMID 10419476]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IDA] [PMID 10419476]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 10760477]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0008425 - 2-polyprenyl-6-methoxy-1,4-benzoquinone methyltransferase activity [Evidence IEA]; GO_function: GO:0061543 - 3-demethylubiquinone-6 3-O-methyltransferase activity [Evidence IMP] [PMID 10419476]; GO_function: GO:0008689 - 3-demethylubiquinone-9 3-O-methyltransferase activity [Evidence IEA]; GO_function: GO:0004395 - hexaprenyldihydroxybenzoate methyltransferase activity [Evidence IEA]; GO_function: GO:0004395 - hexaprenyldihydroxybenzoate methyltransferase activity [Evidence IMP] [PMID 1885593]; GO_function: GO:0008168 - methyltransferase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0032259 - methylation [Evidence IEA]; GO_process: GO:0006744 - ubiquinone biosynthetic process [Evidence IEA,IEA,IEA]; GO_process: GO:0006744 - ubiquinone biosynthetic process [Evidence IDA] [PMID 10419476]; GO_process: GO:0006744 - ubiquinone biosynthetic process [Evidence IMP] [PMID 1885593]; hexaprenyldihydroxybenzoate methyltransferase 1962368 COQ3 30037461 COQ3 Sugiyamaella lignohabitans hexaprenyldihydroxybenzoate methyltransferase XP_018736752.1 1961658 D 796027 CDS AWJ20_5241 30037462 complement(1962733..1963380) D 1 NC_031673.1 Protein involved in late endosome to vacuole transport; cytoplasmic and vacuolar membrane protein; required for normal filament maturation during pseudohyphal growth; may function in targeting cargo proteins for degradation; interacts with Vta1p; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005768 - endosome [Evidence IEA]; GO_component: GO:0010008 - endosome membrane [Evidence IEA]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 14562095]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 23708375]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0030447 - filamentous growth [Evidence IMP] [PMID 12940986]; GO_process: GO:0032511 - late endosome to vacuole transport via multivesicular body sorting pathway [Evidence IGI] [PMID 18032584]; GO_process: GO:0015031 - protein transport [Evidence IEA,IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Vps60p 1963380 VPS60 30037462 VPS60 Sugiyamaella lignohabitans Vps60p XP_018736753.1 1962733 R 796027 CDS AWJ20_5242 30037463 complement(1966207..1966980) D 1 NC_031673.1 uncharacterized protein 1966980 30037463 AWJ20_5242 Sugiyamaella lignohabitans uncharacterized protein XP_018736754.1 1966207 R 796027 CDS AWJ20_5243 30037464 1968320..1969477 D 1 NC_031673.1 Alanine:glyoxylate aminotransferase (AGT); catalyzes the synthesis of glycine from glyoxylate, which is one of three pathways for glycine biosynthesis in yeast; has similarity to mammalian and plant alanine:glyoxylate aminotransferases; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0008453 - alanine-glyoxylate transaminase activity [Evidence IEA]; GO_function: GO:0008453 - alanine-glyoxylate transaminase activity [Evidence IMP] [PMID 14745783]; GO_function: GO:0008453 - alanine-glyoxylate transaminase activity [Evidence IDA] [PMID 16226833]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0030170 - pyridoxal phosphate binding [Evidence IEA]; GO_function: GO:0008483 - transaminase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006545 - glycine biosynthetic process [Evidence IEA]; GO_process: GO:0019265 - glycine biosynthetic process, by transamination of glyoxylate [Evidence IDA] [PMID 16226833]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; alanine--glyoxylate transaminase 1969477 AGX1 30037464 AGX1 Sugiyamaella lignohabitans alanine--glyoxylate transaminase XP_018736755.1 1968320 D 796027 CDS AWJ20_5244 30037465 complement(1969549..1971270) D 1 NC_031673.1 uncharacterized protein 1971270 30037465 AWJ20_5244 Sugiyamaella lignohabitans uncharacterized protein XP_018736756.1 1969549 R 796027 CDS AWJ20_5245 30037466 1971658..1973214 D 1 NC_031673.1 uncharacterized protein 1973214 30037466 AWJ20_5245 Sugiyamaella lignohabitans uncharacterized protein XP_018736757.1 1971658 D 796027 CDS AWJ20_5246 30037467 1973341..1974048 D 1 NC_031673.1 uncharacterized protein 1974048 30037467 AWJ20_5246 Sugiyamaella lignohabitans uncharacterized protein XP_018736758.1 1973341 D 796027 CDS AWJ20_5247 30037468 complement(1974100..1976328) D 1 NC_031673.1 Phosphatidylserine decarboxylase of the Golgi and vacuolar membranes; converts phosphatidylserine to phosphatidylethanolamine; controls vacuolar membrane phospholipid content by regulating phospholipids in compartments that will eventually give rise to the vacuole; loss of Psd2p causes a specific reduction in vacuolar membrane PE levels while total PE levels are not significantly affected; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0005795 - Golgi stack [Evidence IEA]; GO_component: GO:0005768 - endosome [Evidence IDA] [PMID 20016005]; GO_component: GO:0005773 - vacuole [Evidence IEA,IEA]; GO_function: GO:0016831 - carboxy-lyase activity [Evidence IEA]; GO_function: GO:0016829 - lyase activity [Evidence IEA]; GO_function: GO:0004609 - phosphatidylserine decarboxylase activity [Evidence IEA,IEA]; GO_function: GO:0004609 - phosphatidylserine decarboxylase activity [Evidence IGI] [PMID 14660568]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0006656 - phosphatidylcholine biosynthetic process [Evidence IDA] [PMID 6427211]; GO_process: GO:0006646 - phosphatidylethanolamine biosynthetic process [Evidence IEA]; GO_process: GO:0008654 - phospholipid biosynthetic process [Evidence IEA,IEA]; phosphatidylserine decarboxylase 2 1976328 PSD2 30037468 PSD2 Sugiyamaella lignohabitans phosphatidylserine decarboxylase 2 XP_018736759.1 1974100 R 796027 CDS AWJ20_5248 30037469 complement(1978947..1980374) D 1 NC_031673.1 Protein translocase and chaperone required for Complex III assembly; member of the AAA ATPase family; forms a homo-oligomeric complex in the mitochondrial inner membrane that translocates the C-terminal domain of Rip1p from the matrix across the inner membrane, and then delivers it to an assembly intermediate of respiratory Complex III in an ATP-dependent reaction; also required for assembly of the Qcr10p subunit; mutations in human homolog BCS1L linked to neonatal diseases; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IDA] [PMID 8599931]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016887 - ATPase activity [Evidence ISS] [PMID 1327750]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_function: GO:0008320 - protein transmembrane transporter activity [Evidence IMP] [PMID 22017868]; GO_process: GO:0051131 - chaperone-mediated protein complex assembly [Evidence IMP,IPI] [PMID 10508156]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0034551 - mitochondrial respiratory chain complex III assembly [Evidence IMP] [PMID 22017868]; GO_process: GO:0032979 - protein insertion into mitochondrial membrane from inner side [Evidence IMP,IPI] [PMID 22017868]; bifunctional AAA family ATPase chaperone/translocase BCS1 1980374 BCS1 30037469 BCS1 Sugiyamaella lignohabitans bifunctional AAA family ATPase chaperone/translocase BCS1 XP_018736760.1 1978947 R 796027 CDS AWJ20_5249 30037470 1981210..1984851 D 1 NC_031673.1 Ubiquitin-specific protease; removes ubiquitin from ubiquitinated proteins; deubiquitinates Rsp5p and is required for MVB sorting of membrane proteins; can cleave polyubiquitin and has isopeptidase activity; GO_component: GO:0005737 - cytoplasm [Evidence IC] [PMID 1429680]; GO_function: GO:0008234 - cysteine-type peptidase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_function: GO:0004843 - ubiquitin-specific protease activity [Evidence IDA] [PMID 1429680]; GO_function: GO:0004843 - ubiquitin-specific protease activity [Evidence IDA,IMP] [PMID 24069405]; GO_process: GO:0016579 - protein deubiquitination [Evidence IDA] [PMID 15933713]; GO_process: GO:0016579 - protein deubiquitination [Evidence IDA,IMP] [PMID 24069405]; GO_process: GO:0006508 - proteolysis [Evidence IEA]; GO_process: GO:0006511 - ubiquitin-dependent protein catabolic process [Evidence IEA]; GO_process: GO:0043162 - ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway [Evidence IGI,IMP,IPI] [PMID 19165343]; Ubp2p 1984851 UBP2 30037470 UBP2 Sugiyamaella lignohabitans Ubp2p XP_018736761.1 1981210 D 796027 CDS AWJ20_5250 30037472 1985006..1985377 D 1 NC_031673.1 Ubiquitin-specific protease; removes ubiquitin from ubiquitinated proteins; deubiquitinates Rsp5p and is required for MVB sorting of membrane proteins; can cleave polyubiquitin and has isopeptidase activity; GO_component: GO:0005737 - cytoplasm [Evidence IC] [PMID 1429680]; GO_function: GO:0008234 - cysteine-type peptidase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_function: GO:0004843 - ubiquitin-specific protease activity [Evidence IDA] [PMID 1429680]; GO_function: GO:0004843 - ubiquitin-specific protease activity [Evidence IDA,IMP] [PMID 24069405]; GO_process: GO:0016579 - protein deubiquitination [Evidence IDA] [PMID 15933713]; GO_process: GO:0016579 - protein deubiquitination [Evidence IDA,IMP] [PMID 24069405]; GO_process: GO:0006508 - proteolysis [Evidence IEA]; GO_process: GO:0006511 - ubiquitin-dependent protein catabolic process [Evidence IEA]; GO_process: GO:0043162 - ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway [Evidence IGI,IMP,IPI] [PMID 19165343]; Ubp2p 1985377 UBP2 30037472 UBP2 Sugiyamaella lignohabitans Ubp2p XP_018736762.1 1985006 D 796027 CDS AWJ20_5251 30037473 complement(1985584..1986657) D 1 NC_031673.1 Golgi phosphatidylinositol-4-kinase effector and PtdIns4P sensor; interacts with the cytosolic domains of cis and medial glycosyltransferases, and in the PtdIns4P-bound state mediates the targeting of these enzymes to the Golgi; interacts with the catalytic domain of Sac1p, the major cellular PtdIns4P phosphatase, to direct dephosphosphorylation of the Golgi pool of PtdIns4P; tetramerization required for function; ortholog of human GOLPH3/GPP34/GMx33; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0005794 - Golgi apparatus [Evidence IDA] [PMID 18410729]; GO_component: GO:0032580 - Golgi cisterna membrane [Evidence IEA]; GO_component: GO:0005797 - Golgi medial cisterna [Evidence IDA] [PMID 22553352]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 18410729]; GO_component: GO:0019898 - extrinsic component of membrane [Evidence IDA] [PMID 18635803]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0019899 - enzyme binding [Evidence IPI] [PMID 18410729]; GO_function: GO:0008289 - lipid binding [Evidence IEA]; GO_function: GO:0070273 - phosphatidylinositol-4-phosphate binding [Evidence IDA,IMP] [PMID 20026658]; GO_process: GO:0030968 - endoplasmic reticulum unfolded protein response [Evidence IMP] [PMID 16582425]; GO_process: GO:0034067 - protein localization to Golgi apparatus [Evidence IMP] [PMID 18410729]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0060304 - regulation of phosphatidylinositol dephosphorylation [Evidence IMP] [PMID 22553352]; GO_process: GO:0006890 - retrograde vesicle-mediated transport, Golgi to ER [Evidence IMP] [PMID 18635803]; GO_process: GO:0006810 - transport [Evidence IEA]; Vps74p 1986657 VPS74 30037473 VPS74 Sugiyamaella lignohabitans Vps74p XP_018736763.1 1985584 R 796027 CDS AWJ20_5252 30037474 complement(1987824..1989152) D 1 NC_031673.1 uncharacterized protein 1989152 30037474 AWJ20_5252 Sugiyamaella lignohabitans uncharacterized protein XP_018736764.1 1987824 R 796027 CDS AWJ20_5253 30037475 1989927..1992401 D 1 NC_031673.1 Probable DNA helicase; involved in sister-chromatid cohesion and genome integrity and interstrand cross-link repair; interacts with ECO1 and CTF18; mutants are defective in silencing, rDNA recombination, aging and the heat shock response; FANCJ-like helicase family member; mutations in the human homolog, DDX11/ChLR1, cause Warsaw breakage syndrome; GO_component: GO:0000790 - nuclear chromatin [Evidence IMP] [PMID 24086532]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 10931920]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 15020404]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004003 - ATP-dependent DNA helicase activity [Evidence IEA]; GO_function: GO:0008026 - ATP-dependent helicase activity [Evidence IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0003678 - DNA helicase activity [Evidence IMP,ISS] [PMID 10931920]; GO_function: GO:0004386 - helicase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016817 - hydrolase activity, acting on acid anhydrides [Evidence IEA]; GO_function: GO:0016818 - hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides [Evidence IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0032508 - DNA duplex unwinding [Evidence IEA]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0034085 - establishment of sister chromatid cohesion [Evidence IMP] [PMID 23334284]; GO_process: GO:0036297 - interstrand cross-link repair [Evidence IGI] [PMID 22912599]; GO_process: GO:0007064 - mitotic sister chromatid cohesion [Evidence IGI,IMP] [PMID 14742714]; GO_process: GO:0007064 - mitotic sister chromatid cohesion [Evidence IGI,IMP,IPI] [PMID 15020404]; GO_process: GO:0007064 - mitotic sister chromatid cohesion [Evidence IGI] [PMID 17483413]; GO_process: GO:0006139 - nucleobase-containing compound metabolic process [Evidence IEA]; Chl1p 1992401 CHL1 30037475 CHL1 Sugiyamaella lignohabitans Chl1p XP_018736765.1 1989927 D 796027 CDS AWJ20_5254 30037476 join(1992594..1992856,1992980..1995707) D 1 NC_031673.1 linker nucleoporin NIC96 1995707 NIC96 30037476 NIC96 Sugiyamaella lignohabitans linker nucleoporin NIC96 XP_018736766.1 1992594 D 796027 CDS AWJ20_5255 30037477 1996374..1997465 D 1 NC_031673.1 Glucose-repressible alcohol dehydrogenase II; catalyzes the conversion of ethanol to acetaldehyde; involved in the production of certain carboxylate esters; regulated by ADR1; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0004022 - alcohol dehydrogenase (NAD) activity [Evidence IEA]; GO_function: GO:0004022 - alcohol dehydrogenase (NAD) activity [Evidence IDA] [PMID 3546317]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0006116 - NADH oxidation [Evidence IDA] [PMID 3546317]; GO_process: GO:0000947 - amino acid catabolic process to alcohol via Ehrlich pathway [Evidence IGI] [PMID 12499363]; GO_process: GO:0006067 - ethanol metabolic process [Evidence IDA] [PMID 3546317]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; alcohol dehydrogenase ADH2 1997465 ADH2 30037477 ADH2 Sugiyamaella lignohabitans alcohol dehydrogenase ADH2 XP_018736767.1 1996374 D 796027 CDS AWJ20_5256 30037478 complement(1999213..1999980) D 1 NC_031673.1 Protein involved in 20S proteasome assembly; forms a heterodimer with Pba1p that binds to proteasome precursors; interaction with Pba1p-Add66p may affect function of the mature proteasome and its role in maintaining respiratory metabolism; similar to human PAC2 constituent of the PAC1-PAC2 complex involved in proteasome assembly; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 17634286]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0043248 - proteasome assembly [Evidence IGI,ISS] [PMID 17431397]; GO_process: GO:0043248 - proteasome assembly [Evidence IMP] [PMID 17634286]; Add66p 1999980 ADD66 30037478 ADD66 Sugiyamaella lignohabitans Add66p XP_018736768.1 1999213 R 796027 CDS AWJ20_5257 30037479 2001917..2008141 D 1 NC_031673.1 uncharacterized protein 2008141 30037479 AWJ20_5257 Sugiyamaella lignohabitans uncharacterized protein XP_018736769.1 2001917 D 796027 CDS AWJ20_5258 30037480 complement(join(2006239..2007728,2007806..2007839)) D 1 NC_031673.1 Uncharacterized protein C2orf16 2007839 30037480 AWJ20_5258 Sugiyamaella lignohabitans Uncharacterized protein C2orf16 XP_018736770.1 2006239 R 796027 CDS AWJ20_5259 30037481 2008591..2009703 D 1 NC_031673.1 Member of the conserved GPN-loop GTPase family; has a role in transport of RNA polymerase II to the nucleus; exhibits GTP-dependent binding to PolII; has ATPase activity; involved in sister chromatid cohesion; phosphorylated by the Pcl1p-Pho85p kinase complex; human homolog XAB1 interacts with human RNA polymerase II; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0016887 - ATPase activity [Evidence IDA] [PMID 15082539]; GO_function: GO:0005525 - GTP binding [Evidence IEA]; GO_function: GO:0003924 - GTPase activity [Evidence IMP] [PMID 21844196]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_process: GO:0044376 - RNA polymerase II complex localization to nucleus [Evidence IMP] [PMID 21844196]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0007064 - mitotic sister chromatid cohesion [Evidence IMP] [PMID 21532343]; GO_process: GO:0006913 - nucleocytoplasmic transport [Evidence IDA] [PMID 21844196]; GTPase NPA3 2009703 NPA3 30037481 NPA3 Sugiyamaella lignohabitans GTPase NPA3 XP_018736771.1 2008591 D 796027 CDS AWJ20_5260 30037483 complement(2009969..2012332) D 1 NC_031673.1 conserved protein (fungal and bacterial) 2012332 30037483 AWJ20_5260 Sugiyamaella lignohabitans conserved protein (fungal and bacterial) XP_018736772.1 2009969 R 796027 CDS AWJ20_5261 30037484 complement(join(2013096..2014384,2015004..2017221)) D 1 NC_031673.1 Subunit of chromatin assembly factor I (CAF-1), with Rlf2p and Msi1p; chromatin assembly by CAF-1 is important for multiple processes including silencing at telomeres, mating type loci, and rDNA; maintenance of kinetochore structure, deactivation of the DNA damage checkpoint after DNA repair, and chromatin dynamics during transcription; relocalizes to the cytosol in response to hypoxia; GO_component: GO:0033186 - CAF-1 complex [Evidence IDA] [PMID 9030687]; GO_component: GO:0000775 - chromosome, centromeric region [Evidence IDA] [PMID 11782447]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 22932476]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22932476]; GO_function: GO:0042393 - histone binding [Evidence IDA] [PMID 16503640]; GO_process: GO:0006335 - DNA replication-dependent nucleosome assembly [Evidence IDA,IMP] [PMID 9030687]; Cac2p 2017221 CAC2 30037484 CAC2 Sugiyamaella lignohabitans Cac2p XP_018736773.1 2013096 R 796027 CDS AWJ20_5262 30037485 2018762..2019919 D 1 NC_031673.1 uncharacterized protein 2019919 30037485 AWJ20_5262 Sugiyamaella lignohabitans uncharacterized protein XP_018736774.1 2018762 D 796027 CDS AWJ20_5263 30037486 2020706..2022898 D 1 NC_031673.1 RNA-processing protein PTA1 2022898 PTA1 30037486 PTA1 Sugiyamaella lignohabitans RNA-processing protein PTA1 XP_018736775.1 2020706 D 796027 CDS AWJ20_5264 30037487 complement(2023086..2025368) D 1 NC_031673.1 Vacuolar fusion protein CCZ1 2025368 30037487 AWJ20_5264 Sugiyamaella lignohabitans Vacuolar fusion protein CCZ1 XP_018736776.1 2023086 R 796027 CDS AWJ20_5265 30037488 2026346..2028184 D 1 NC_031673.1 uncharacterized protein 2028184 30037488 AWJ20_5265 Sugiyamaella lignohabitans uncharacterized protein XP_018736777.1 2026346 D 796027 CDS AWJ20_5266 30037489 complement(2028373..2029860) D 1 NC_031673.1 putative WD repeat-containing protein alr3466 2029860 AIP1 30037489 AIP1 Sugiyamaella lignohabitans putative WD repeat-containing protein alr3466 XP_018736778.1 2028373 R 796027 CDS AWJ20_5267 30037490 complement(2031684..2032169) D 1 NC_031673.1 Protein that forms a complex with Lto1p and Rli1p; essential for growth under standard (aerobic) conditions but not under anaerobic conditions; may have a role in protection of ribosomal assembly and function from damage due to reactive oxygen species; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0042273 - ribosomal large subunit biogenesis [Evidence IGI,IPI] [PMID 23318452]; GO_process: GO:0006413 - translational initiation [Evidence IGI,IPI] [PMID 23318452]; Yae1p 2032169 YAE1 30037490 YAE1 Sugiyamaella lignohabitans Yae1p XP_018736779.1 2031684 R 796027 CDS AWJ20_5268 30037491 complement(2036462..2037115) D 1 NC_031673.1 Ubiquitin-binding protein; endoplasmic reticulum membrane protein that recruits the ubiquitin-conjugating enzyme Ubc7p to the ER where it functions in protein degradation; contains a CUE domain that binds ubiquitin to facilitate intramolecular monoubiquitination; CUE1 has a paralog, CUE4, that arose from the whole genome duplication; GO_component: GO:0000837 - Doa10p ubiquitin ligase complex [Evidence IDA] [PMID 16873066]; GO_component: GO:0000839 - Hrd1p ubiquitin ligase ERAD-L complex [Evidence IDA] [PMID 16873066]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0030176 - integral component of endoplasmic reticulum membrane [Evidence IDA] [PMID 9388185]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0043130 - ubiquitin binding [Evidence IDA] [PMID 23665229]; GO_function: GO:0097027 - ubiquitin-protein transferase activator activity [Evidence IDA] [PMID 18321851]; GO_process: GO:0030433 - ER-associated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 9388185]; GO_process: GO:0097051 - establishment of protein localization to endoplasmic reticulum membrane [Evidence IMP] [PMID 9388185]; Cue1p 2037115 CUE1 30037491 CUE1 Sugiyamaella lignohabitans Cue1p XP_018736780.1 2036462 R 796027 CDS AWJ20_5269 30037492 complement(2039190..2041430) D 1 NC_031673.1 serine/threonine protein kinase CBK1 2041430 CBK1 30037492 CBK1 Sugiyamaella lignohabitans serine/threonine protein kinase CBK1 XP_018736781.1 2039190 R 796027 CDS AWJ20_5270 30037494 complement(2042864..2043757) D 1 NC_031673.1 uncharacterized protein 2043757 30037494 AWJ20_5270 Sugiyamaella lignohabitans uncharacterized protein XP_018736782.1 2042864 R 796027 CDS AWJ20_5271 30037495 complement(2044647..2045303) D 1 NC_031673.1 Thymidylate and uridylate kinase; functions in de novo biosynthesis of pyrimidine deoxyribonucleotides; converts dTMP to dTDP and dUMP to dUTP; essential for mitotic and meiotic DNA replication; homologous to S. pombe Tmp1p; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 6094555]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 6094555]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0004798 - thymidylate kinase activity [Evidence IEA,IEA]; GO_function: GO:0004798 - thymidylate kinase activity [Evidence IDA] [PMID 6088527]; GO_function: GO:0004798 - thymidylate kinase activity [Evidence IDA] [PMID 6094555]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0009041 - uridylate kinase activity [Evidence IDA] [PMID 6094555]; GO_process: GO:0006233 - dTDP biosynthetic process [Evidence IEA]; GO_process: GO:0006233 - dTDP biosynthetic process [Evidence IDA] [PMID 6094555]; GO_process: GO:0006235 - dTTP biosynthetic process [Evidence IEA]; GO_process: GO:0006235 - dTTP biosynthetic process [Evidence IDA] [PMID 6094555]; GO_process: GO:0006227 - dUDP biosynthetic process [Evidence IDA] [PMID 6094555]; GO_process: GO:0009165 - nucleotide biosynthetic process [Evidence IEA]; GO_process: GO:0046939 - nucleotide phosphorylation [Evidence IEA,IEA]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; bifunctional thymidylate/uridylate kinase 2045303 CDC8 30037495 CDC8 Sugiyamaella lignohabitans bifunctional thymidylate/uridylate kinase XP_018736783.1 2044647 R 796027 CDS AWJ20_5272 30037496 complement(2046153..2048057) D 1 NC_031673.1 uncharacterized protein 2048057 30037496 AWJ20_5272 Sugiyamaella lignohabitans uncharacterized protein XP_018736784.1 2046153 R 796027 CDS AWJ20_5273 30037497 complement(2050535..2051956) D 1 NC_031673.1 Uncharacterized protein YNL193W 2051956 30037497 AWJ20_5273 Sugiyamaella lignohabitans Uncharacterized protein YNL193W XP_018736785.1 2050535 R 796027 CDS AWJ20_5274 30037498 complement(2052804..2054495) D 1 NC_031673.1 Monoglyceride lipase (MGL); functional ortholog of mammalian MGL, localizes to lipid particles and membranes, also member of the eukaryotic serine hydrolase family; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA,IEA]; GO_component: GO:0005811 - lipid particle [Evidence IEA,IEA]; GO_component: GO:0005811 - lipid particle [Evidence IDA] [PMID 10515935]; GO_component: GO:0005811 - lipid particle [Evidence IDA] [PMID 20554061]; GO_component: GO:0005811 - lipid particle [Evidence IDA] [PMID 24868093]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IDA] [PMID 20554061]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IEA,IEA]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IDA] [PMID 16407407]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 16622836]; GO_function: GO:0047372 - acylglycerol lipase activity [Evidence IEA]; GO_function: GO:0047372 - acylglycerol lipase activity [Evidence IMP] [PMID 20554061]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0017171 - serine hydrolase activity [Evidence IDA,ISM] [PMID 14645503]; GO_process: GO:0019433 - triglyceride catabolic process [Evidence IEA]; GO_process: GO:0006641 - triglyceride metabolic process [Evidence IMP] [PMID 20554061]; Yju3p 2054495 YJU3 30037498 YJU3 Sugiyamaella lignohabitans Yju3p XP_018736786.1 2052804 R 796027 CDS AWJ20_5275 30037499 2056992..2062388 D 1 NC_031673.1 protein kinase MEC1 2062388 MEC1 30037499 MEC1 Sugiyamaella lignohabitans protein kinase MEC1 XP_018736787.1 2056992 D 796027 CDS AWJ20_5276 30037500 2062497..2062925 D 1 NC_031673.1 protein kinase MEC1 2062925 MEC1 30037500 MEC1 Sugiyamaella lignohabitans protein kinase MEC1 XP_018736788.1 2062497 D 796027 CDS AWJ20_5277 30037501 complement(join(2064227..2068029,2069725..2069743)) D 1 NC_031673.1 Subunit of the eukaryotic translation initiation factor 3 (eIF3); component of unknown function; deletion causes defects in mitochondrial organization but not in growth or translation initiation; can rescue cytokinesis and mitochondrial organization defects of the Dictyostelium cluA- mutant; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005852 - eukaryotic translation initiation factor 3 complex [Evidence IPI] [PMID 10358023]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_process: GO:0048312 - intracellular distribution of mitochondria [Evidence IEA]; GO_process: GO:0007005 - mitochondrion organization [Evidence IEA]; GO_process: GO:0007005 - mitochondrion organization [Evidence IMP] [PMID 9601101]; GO_process: GO:0006413 - translational initiation [Evidence IPI] [PMID 10358023]; Clu1p 2069743 CLU1 30037501 CLU1 Sugiyamaella lignohabitans Clu1p XP_018736789.1 2064227 R 796027 CDS AWJ20_5278 30037502 complement(2070974..2071840) D 1 NC_031673.1 Mitochondrial ribosomal protein of the large subunit; two mitochondrial ribosomal proteins, YmL14 and YmL24, have been assigned to the same gene; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0005762 - mitochondrial large ribosomal subunit [Evidence IDA] [PMID 9151978]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA,IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IDA] [PMID 9151978]; GO_process: GO:0032543 - mitochondrial translation [Evidence IC] [PMID 9151978]; GO_process: GO:0006412 - translation [Evidence IEA]; mitochondrial 54S ribosomal protein YmL24/YmL14 2071840 MRPL24 30037502 MRPL24 Sugiyamaella lignohabitans mitochondrial 54S ribosomal protein YmL24/YmL14 XP_018736790.1 2070974 R 796027 CDS AWJ20_5279 30037503 complement(2072539..2074779) D 1 NC_031673.1 GTPase-activating protein (GAP) for yeast Rab family members; involved in ER to Golgi trafficking; exhibits GAP activity toward Ypt1p that is stimulated by Gyl1p, also acts on Sec4p; interacts with Gyl1p, Rvs161p and Rvs167p; involved in recruiting Rvs167p to the bud tip during polarized growth; relocalizes from bud neck to cytoplasm upon DNA replication stress; GYP5 has a paralog, GYL1, that arose from the whole genome duplication; GO_component: GO:0005798 - Golgi-associated vesicle [Evidence IDA] [PMID 15331637]; GO_component: GO:0005933 - cellular bud [Evidence IEA]; GO_component: GO:0005935 - cellular bud neck [Evidence IEA]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 15331637]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 22842922]; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 15331637]; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 22842922]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 12189143]; GO_component: GO:0000131 - incipient cellular bud site [Evidence IDA] [PMID 15331637]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 15331637]; GO_function: GO:0005096 - GTPase activator activity [Evidence IEA]; GO_function: GO:0005097 - Rab GTPase activator activity [Evidence IEA]; GO_function: GO:0005097 - Rab GTPase activator activity [Evidence IGI,IPI,ISS] [PMID 12189143]; GO_function: GO:0005097 - Rab GTPase activator activity [Evidence IGI,IPI] [PMID 15802519]; GO_process: GO:0006888 - ER to Golgi vesicle-mediated transport [Evidence IGI,IPI] [PMID 15802519]; GO_process: GO:0006887 - exocytosis [Evidence IEA]; GO_process: GO:0043547 - positive regulation of GTPase activity [Evidence IEA]; GO_process: GO:0032851 - positive regulation of Rab GTPase activity [Evidence IEA]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0032313 - regulation of Rab GTPase activity [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IEA]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IGI] [PMID 12189143]; Gyp5p 2074779 GYP5 30037503 GYP5 Sugiyamaella lignohabitans Gyp5p XP_018736791.1 2072539 R 796027 CDS AWJ20_5280 30037505 complement(2075490..2076617) D 1 NC_031673.1 Peptidyl-prolyl cis-trans isomerase (cyclophilin); catalyzes the cis-trans isomerization of peptide bonds N-terminal to proline residues; plays a role in determining prion variants; binds to Hsp82p and contributes to chaperone activity; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 9191025]; GO_function: GO:0016853 - isomerase activity [Evidence IEA]; GO_function: GO:0003755 - peptidyl-prolyl cis-trans isomerase activity [Evidence IEA,IEA,IEA]; GO_function: GO:0003755 - peptidyl-prolyl cis-trans isomerase activity [Evidence IDA] [PMID 10942767]; GO_function: GO:0003755 - peptidyl-prolyl cis-trans isomerase activity [Evidence IDA] [PMID 9191025]; GO_function: GO:0051082 - unfolded protein binding [Evidence IDA] [PMID 10942767]; GO_process: GO:0006457 - protein folding [Evidence IEA,IEA]; GO_process: GO:0006457 - protein folding [Evidence IDA,IPI] [PMID 9927435]; GO_process: GO:0000413 - protein peptidyl-prolyl isomerization [Evidence IEA,IEA,IEA]; GO_process: GO:0042026 - protein refolding [Evidence IDA] [PMID 10942767]; peptidylprolyl isomerase CPR6 2076617 CPR6 30037505 CPR6 Sugiyamaella lignohabitans peptidylprolyl isomerase CPR6 XP_018736792.1 2075490 R 796027 CDS AWJ20_5281 30037506 2077731..2079584 D 1 NC_031673.1 uncharacterized protein 2079584 30037506 AWJ20_5281 Sugiyamaella lignohabitans uncharacterized protein XP_018736793.1 2077731 D 796027 CDS AWJ20_5282 30037507 2080848..2082830 D 1 NC_031673.1 uncharacterized protein 2082830 30037507 AWJ20_5282 Sugiyamaella lignohabitans uncharacterized protein XP_018736794.1 2080848 D 796027 CDS AWJ20_5283 30037508 complement(2083100..2084152) D 1 NC_031673.1 Putative short-chain dehydrogenase/reductase; YDL114W is not an essential gene; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; short-chain dehydrogenase/reductase 2084152 30037508 AWJ20_5283 Sugiyamaella lignohabitans short-chain dehydrogenase/reductase XP_018736795.1 2083100 R 796027 CDS AWJ20_5284 30037509 join(2085318..2085778,2085847..2086381) D 1 NC_031673.1 RNA polymerase II transport factor, conserved from yeast to humans; also has a role in transporting RNA polymerase III into the nucleus; interacts with most of the RNAP II subunits; nucleo-cytoplasmic shuttling protein; deletion causes hypersensitivity to K1 killer toxin; protein increases in abundance and relocalizes from nucleus to cytoplasm upon DNA replication stress; GO_component: GO:0016591 - DNA-directed RNA polymerase II, holoenzyme [Evidence IPI] [PMID 16554755]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 19679657]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 21504834]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 19679657]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 21504834]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_function: GO:0005515 - protein binding [Evidence IPI] [PMID 21504834]; GO_process: GO:0044376 - RNA polymerase II complex localization to nucleus [Evidence IMP] [PMID 21504834]; GO_process: GO:0044376 - RNA polymerase II complex localization to nucleus [Evidence IMP] [PMID 23267056]; GO_process: GO:1990022 - RNA polymerase III complex localization to nucleus [Evidence IMP] [PMID 23267056]; GO_process: GO:0006913 - nucleocytoplasmic transport [Evidence IMP] [PMID 21504834]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Iwr1p 2086381 IWR1 30037509 IWR1 Sugiyamaella lignohabitans Iwr1p XP_018736796.1 2085318 D 796027 CDS AWJ20_5285 30037510 complement(2087497..2089008) D 1 NC_031673.1 Actin-associated protein with roles in endocytosis and exocytosis; interacts with Rvs161p to regulate actin cytoskeleton, endocytosis, and viability following starvation or osmotic stress; recruited to bud tips by Gyl1p and Gyp5p during polarized growth; homolog of mammalian amphiphysin; GO_component: GO:0030479 - actin cortical patch [Evidence IDA] [PMID 10393809]; GO_component: GO:0030479 - actin cortical patch [Evidence IDA] [PMID 16239147]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 24390141]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA,IEA]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 10393809]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 19053807]; GO_function: GO:0003779 - actin binding [Evidence IEA]; GO_function: GO:0008092 - cytoskeletal protein binding [Evidence IPI,ISS] [PMID 10388809]; GO_function: GO:0008289 - lipid binding [Evidence IDA] [PMID 20610658]; GO_process: GO:0051666 - actin cortical patch localization [Evidence IMP] [PMID 8590801]; GO_process: GO:0006897 - endocytosis [Evidence IMP] [PMID 8590801]; GO_process: GO:0060988 - lipid tube assembly [Evidence IDA] [PMID 20610658]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IGI,IPI] [PMID 15802519]; amphiphysin 2089008 RVS167 30037510 RVS167 Sugiyamaella lignohabitans amphiphysin XP_018736797.1 2087497 R 796027 CDS AWJ20_5286 30037511 2089785..2090960 D 1 NC_031673.1 uncharacterized protein 2090960 30037511 AWJ20_5286 Sugiyamaella lignohabitans uncharacterized protein XP_018736798.1 2089785 D 796027 CDS AWJ20_5287 30037512 complement(2094967..2096952) D 1 NC_031673.1 uncharacterized protein 2096952 30037512 AWJ20_5287 Sugiyamaella lignohabitans uncharacterized protein XP_018736799.1 2094967 R 796027 CDS AWJ20_5288 30037513 2110442..2110795 D 1 NC_031673.1 Integral membrane protein localized to mitochondria; required for sporulation and maintaining sphingolipid content; similar to SUR7; FMP45 has a paralog, YNL194C, that arose from the whole genome duplication; GO_component: GO:0005938 - cell cortex [Evidence IDA] [PMID 11784867]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016021 - integral component of membrane [Evidence ISS] [PMID 9219339]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 16622836]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0030437 - ascospore formation [Evidence IGI,IMP] [PMID 11784867]; GO_process: GO:0031505 - fungal-type cell wall organization [Evidence IMP] [PMID 11784867]; GO_process: GO:0006950 - response to stress [Evidence IEA]; GO_process: GO:0030435 - sporulation resulting in formation of a cellular spore [Evidence IEA]; Fmp45p 2110795 FMP45 30037513 FMP45 Sugiyamaella lignohabitans Fmp45p XP_018736800.1 2110442 D 796027 CDS AWJ20_5289 30037514 complement(2114063..2117005) D 1 NC_031673.1 mRNA-binding protein WHI3 2117005 WHI3 30037514 WHI3 Sugiyamaella lignohabitans mRNA-binding protein WHI3 XP_018736801.1 2114063 R 796027 CDS AWJ20_5290 30037516 2121696..2122844 D 1 NC_031673.1 Sterol regulatory element binding protein; regulates transcription of sterol biosynthetic genes; contains Zn[2]-Cys[6] binuclear cluster; relocates from intracellular membranes to perinuclear foci on sterol depletion; ECM22 has a paralog, UPC2, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0016020 - membrane [Evidence IDA] [PMID 18675371]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IC] [PMID 11533229]; GO_component: GO:0048471 - perinuclear region of cytoplasm [Evidence IDA] [PMID 18675371]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0000978 - RNA polymerase II core promoter proximal region sequence-specific DNA binding [Evidence IDA] [PMID 11533229]; GO_function: GO:0001077 - RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription [Evidence IDA] [PMID 11533229]; GO_function: GO:0001077 - RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription [Evidence IMP] [PMID 16055745]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19111667]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19158363]; GO_function: GO:0000981 - sequence-specific DNA binding RNA polymerase II transcription factor activity [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0035961 - positive regulation of ergosterol biosynthetic process by positive regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 11533229]; GO_process: GO:0035961 - positive regulation of ergosterol biosynthetic process by positive regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 16055745]; GO_process: GO:0035969 - positive regulation of sterol import by positive regulation of transcription from RNA polymerase II promoter [Evidence IGI] [PMID 11208779]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA,IEA]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Ecm22p 2122844 ECM22 30037516 ECM22 Sugiyamaella lignohabitans Ecm22p XP_018736802.1 2121696 D 796027 CDS AWJ20_5291 30037517 complement(2123097..2125202) D 1 NC_031673.1 cytoskeletal protein-binding protein SLA1 2125202 SLA1 30037517 SLA1 Sugiyamaella lignohabitans cytoskeletal protein-binding protein SLA1 XP_018736803.1 2123097 R 796027 CDS AWJ20_5293 30037518 2127766..2128878 D 1 NC_031673.1 Cyclin associated with protein kinase Kin28p; Kin28p is the TFIIH-associated carboxy-terminal domain (CTD) kinase involved in transcription initiation at RNA polymerase II promoters; GO_component: GO:0070985 - TFIIK complex [Evidence IEA]; GO_component: GO:0070985 - TFIIK complex [Evidence IDA] [PMID 11839796]; GO_component: GO:0070985 - TFIIK complex [Evidence IDA] [PMID 19818408]; GO_component: GO:0005675 - holo TFIIH complex [Evidence IDA] [PMID 19818408]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0000990 - core RNA polymerase binding transcription factor activity [Evidence IC] [PMID 19818408]; GO_function: GO:0016538 - cyclin-dependent protein serine/threonine kinase regulator activity [Evidence IEA]; GO_function: GO:0016538 - cyclin-dependent protein serine/threonine kinase regulator activity [Evidence IGI,IPI] [PMID 8230216]; GO_function: GO:0019901 - protein kinase binding [Evidence IEA]; GO_process: GO:0070816 - phosphorylation of RNA polymerase II C-terminal domain [Evidence IDA] [PMID 11839796]; GO_process: GO:0070816 - phosphorylation of RNA polymerase II C-terminal domain [Evidence IDA] [PMID 19450536]; GO_process: GO:0070816 - phosphorylation of RNA polymerase II C-terminal domain [Evidence IDA] [PMID 19679665]; GO_process: GO:0000079 - regulation of cyclin-dependent protein serine/threonine kinase activity [Evidence IEA]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA,IEA]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IDA] [PMID 19818408]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA,IEA]; TFIIH complex kinase subunit CCL1 2128878 CCL1 30037518 CCL1 Sugiyamaella lignohabitans TFIIH complex kinase subunit CCL1 XP_018736804.1 2127766 D 796027 CDS AWJ20_5294 30037519 complement(2129084..2130253) D 1 NC_031673.1 uncharacterized protein 2130253 30037519 AWJ20_5294 Sugiyamaella lignohabitans uncharacterized protein XP_018736805.1 2129084 R 796027 CDS AWJ20_5295 30037520 2131064..2131852 D 1 NC_031673.1 hypothetical protein; undergoes sumoylation; transcription induced under cell wall stress; protein levels are reduced under anaerobic conditions; protein abundance increases in response to DNA replication stress; originally thought to be a mitochondrial ribosomal protein based on sequence analysis; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; Mrp8p 2131852 MRP8 30037520 MRP8 Sugiyamaella lignohabitans Mrp8p XP_018736806.1 2131064 D 796027 CDS AWJ20_5296 30037521 complement(2132056..2134425) D 1 NC_031673.1 Essential subunit of U3-containing 90S preribosome; involved in production of 18S rRNA and assembly of small ribosomal subunit; also part of pre-40S ribosome and required for its export into cytoplasm; binds RNA and contains pumilio domain; GO_component: GO:0030686 - 90S preribosome [Evidence IDA] [PMID 17956976]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 14690591]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 17956976]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14690591]; GO_component: GO:0030688 - preribosome, small subunit precursor [Evidence IDA] [PMID 17956976]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IDA] [PMID 17956976]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_process: GO:0000480 - endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 17956976]; GO_process: GO:0000447 - endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 17956976]; GO_process: GO:0000472 - endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 17956976]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0000056 - ribosomal small subunit export from nucleus [Evidence IMP] [PMID 17956976]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; Nop9p 2134425 NOP9 30037521 NOP9 Sugiyamaella lignohabitans Nop9p XP_018736807.1 2132056 R 796027 CDS AWJ20_5300 30037527 2137595..2139754 D 1 NC_031673.1 Subunit of chromosomal passenger complex (CPC); CPC is comprised of Ipl1p-Sli15p-Bir1p-Nbl1p and regulates chromosome segregation; required for chromosome bi-orientation and for spindle assembly checkpoint activation upon reduced sister kinetochore tension; relative distribution to shortened microtubules increases upon DNA replication stress; sumoylated in an Mms21p-dependent manner; human survivin homolog; GO_component: GO:0032133 - chromosome passenger complex [Evidence IDA] [PMID 19158380]; GO_component: GO:0000778 - condensed nuclear chromosome kinetochore [Evidence IGI,IPI] [PMID 10557299]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 16608876]; GO_component: GO:0005874 - microtubule [Evidence IDA] [PMID 22842922]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 16608876]; GO_component: GO:0005819 - spindle [Evidence IDA] [PMID 16381814]; GO_component: GO:0051233 - spindle midzone [Evidence IDA] [PMID 16381814]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006915 - apoptotic process [Evidence IMP] [PMID 16608876]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0007059 - chromosome segregation [Evidence IMP] [PMID 10557299]; GO_process: GO:0000022 - mitotic spindle elongation [Evidence IMP] [PMID 16381814]; GO_process: GO:0031134 - sister chromatid biorientation [Evidence IMP] [PMID 19528231]; GO_process: GO:0071173 - spindle assembly checkpoint [Evidence IMP] [PMID 22908045]; Bir1p 2139754 BIR1 30037527 BIR1 Sugiyamaella lignohabitans Bir1p XP_018736808.1 2137595 D 796027 CDS AWJ20_5301 30037528 complement(join(2138734..2139427,2140047..2143847,2144060..2144115)) D 1 NC_031673.1 PUF family mRNA-binding protein; Pumilio homology domain confers RNA binding activity; preferentially binds mRNAs encoding membrane-associated proteins; binding site composed of two UAAU tetranucleotides, separated by a 3-nt linker; PUF2 has a paralog, JSN1, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0003723 - RNA binding [Evidence IEA,IEA]; GO_function: GO:0003729 - mRNA binding [Evidence ISS] [PMID 11101532]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 15024427]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 21685478]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0000288 - nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay [Evidence IGI] [PMID 11101532]; Puf2p 2144115 PUF2 30037528 PUF2 Sugiyamaella lignohabitans Puf2p XP_018736809.1 2138734 R 796027 CDS AWJ20_5302 30037529 2152910..2155207 D 1 NC_031673.1 Mitochondrial elongation factor involved in translational elongation; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IMP] [PMID 1935960]; GO_function: GO:0005525 - GTP binding [Evidence IEA,IEA]; GO_function: GO:0003924 - GTPase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0003746 - translation elongation factor activity [Evidence IEA,IEA]; GO_function: GO:0003746 - translation elongation factor activity [Evidence ISA] [PMID 1935960]; GO_process: GO:0006184 - GTP catabolic process [Evidence IEA]; GO_process: GO:0032543 - mitochondrial translation [Evidence IMP] [PMID 1935960]; GO_process: GO:0070125 - mitochondrial translational elongation [Evidence ISA] [PMID 1935960]; GO_process: GO:0006412 - translation [Evidence IEA]; GO_process: GO:0006414 - translational elongation [Evidence IEA,IEA,IEA]; Mef1p 2155207 MEF1 30037529 MEF1 Sugiyamaella lignohabitans Mef1p XP_018736810.1 2152910 D 796027 CDS AWJ20_5303 30037530 2155740..2158601 D 1 NC_031673.1 Alpha-adaptin; large subunit of the clathrin associated protein complex (AP-2); involved in vesicle mediated transport; GO_component: GO:0030122 - AP-2 adaptor complex [Evidence IMP] [PMID 10564262]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 19458192]; GO_component: GO:0030131 - clathrin adaptor complex [Evidence IEA]; GO_component: GO:0005905 - coated pit [Evidence IEA,IEA]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0030117 - membrane coat [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0008565 - protein transporter activity [Evidence IEA]; GO_process: GO:0006897 - endocytosis [Evidence IEA]; GO_process: GO:0006886 - intracellular protein transport [Evidence IEA]; GO_process: GO:0006886 - intracellular protein transport [Evidence IC] [PMID 10564262]; GO_process: GO:0015031 - protein transport [Evidence IEA,IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IEA]; Apl3p 2158601 APL3 30037530 APL3 Sugiyamaella lignohabitans Apl3p XP_018736811.1 2155740 D 796027 CDS AWJ20_5304 30037531 complement(2158827..2159654) D 1 NC_031673.1 uncharacterized protein 2159654 30037531 AWJ20_5304 Sugiyamaella lignohabitans uncharacterized protein XP_018736812.1 2158827 R 796027 CDS AWJ20_5305 30037532 2160300..2162498 D 1 NC_031673.1 Cortical ER protein involved in ER-plasma membrane tethering; one of 6 proteins (Ist2p, Scs2p, Scs22p, Tcb1p, Tcb2p, Tcb3p) that connect ER to the plasma membrane (PM) and regulate PM phosphatidylinositol-4-phosphate (PI4P) levels by controlling access of Sac1p phosphatase to its substrate PI4P in the PM; localizes to the mother cell in small-budded cells and to the bud in medium- and large-budded cells; mRNA is transported to the bud tip by an actomyosin-driven process; GO_component: GO:0033101 - cellular bud membrane [Evidence IDA] [PMID 11030653]; GO_component: GO:0033101 - cellular bud membrane [Evidence IDA] [PMID 13679573]; GO_component: GO:0032541 - cortical endoplasmic reticulum [Evidence IDA] [PMID 23237950]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 11030653]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 17234190]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 23237950]; GO_function: GO:0008289 - lipid binding [Evidence IDA] [PMID 19453974]; GO_process: GO:0090158 - endoplasmic reticulum membrane organization [Evidence IGI] [PMID 23237950]; GO_process: GO:0072659 - protein localization to plasma membrane [Evidence IMP] [PMID 24416406]; GO_process: GO:0060304 - regulation of phosphatidylinositol dephosphorylation [Evidence IGI] [PMID 23237950]; Ist2p 2162498 IST2 30037532 IST2 Sugiyamaella lignohabitans Ist2p XP_018736813.1 2160300 D 796027 CDS AWJ20_5306 30037533 complement(2162666..2164612) D 1 NC_031673.1 B subunit of DNA polymerase alpha-primase complex; required for initiation of DNA replication during mitotic and premeiotic DNA synthesis; also functions in telomere capping and length regulation; GO_component: GO:0005658 - alpha DNA polymerase:primase complex [Evidence IDA] [PMID 22593576]; GO_component: GO:0005658 - alpha DNA polymerase:primase complex [Evidence IDA] [PMID 3888995]; GO_component: GO:0005635 - nuclear envelope [Evidence IDA] [PMID 15282802]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 15282802]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 8289832]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]; GO_function: GO:0003887 - DNA-directed DNA polymerase activity [Evidence IDA] [PMID 1704371]; GO_function: GO:0003887 - DNA-directed DNA polymerase activity [Evidence IDA] [PMID 3888995]; GO_process: GO:0006260 - DNA replication [Evidence IEA,IEA]; GO_process: GO:0006270 - DNA replication initiation [Evidence IMP] [PMID 8289832]; GO_process: GO:0006273 - lagging strand elongation [Evidence IC] [PMID 3888995]; GO_process: GO:0016233 - telomere capping [Evidence IGI,IMP,IPI] [PMID 15132993]; DNA-directed DNA polymerase alpha subunit POL12 2164612 POL12 30037533 POL12 Sugiyamaella lignohabitans DNA-directed DNA polymerase alpha subunit POL12 XP_018736814.1 2162666 R 796027 CDS AWJ20_5307 30037534 complement(2164970..2165992) D 1 NC_031673.1 Amidase; removes the amide group from N-terminal asparagine and glutamine residues to generate proteins with N-terminal aspartate and glutamate residues that are targets of ubiquitin-mediated degradation; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016810 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds [Evidence IEA]; GO_function: GO:0008418 - protein-N-terminal asparagine amidohydrolase activity [Evidence IDA] [PMID 23218487]; GO_function: GO:0008418 - protein-N-terminal asparagine amidohydrolase activity [Evidence IDA,IMP] [PMID 7744855]; GO_function: GO:0070773 - protein-N-terminal glutamine amidohydrolase activity [Evidence IDA] [PMID 23218487]; GO_function: GO:0070773 - protein-N-terminal glutamine amidohydrolase activity [Evidence IMP] [PMID 7744855]; GO_process: GO:0006464 - cellular protein modification process [Evidence IMP] [PMID 7744855]; GO_process: GO:0006807 - nitrogen compound metabolic process [Evidence IEA]; GO_process: GO:0030163 - protein catabolic process [Evidence IMP] [PMID 7744855]; Nta1p 2165992 NTA1 30037534 NTA1 Sugiyamaella lignohabitans Nta1p XP_018736815.1 2164970 R 796027 CDS AWJ20_5308 30037535 complement(2166339..2167325) D 1 NC_031673.1 RNA binding protein required for maturation of tRNA and U6 snRNA; acts as a molecular chaperone for RNAs transcribed by polymerase III; homologous to human La (SS-B) autoantigen; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 11720288]; GO_component: GO:0005654 - nucleoplasm [Evidence IDA] [PMID 11720288]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 10564276]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA,IEA]; GO_function: GO:0003723 - RNA binding [Evidence IDA] [PMID 7799435]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0000049 - tRNA binding [Evidence IDA] [PMID 19749380]; GO_process: GO:0006396 - RNA processing [Evidence IEA]; GO_process: GO:0008033 - tRNA processing [Evidence IMP] [PMID 9150139]; Lhp1p 2167325 LHP1 30037535 LHP1 Sugiyamaella lignohabitans Lhp1p XP_018736816.1 2166339 R 796027 CDS AWJ20_5309 30037536 complement(2167731..2168354) D 1 NC_031673.1 uncharacterized protein 2168354 30037536 AWJ20_5309 Sugiyamaella lignohabitans uncharacterized protein XP_018736817.1 2167731 R 796027 CDS AWJ20_5310 30037538 complement(2169804..2171045) D 1 NC_031673.1 Putative vacuolar membrane transporter for cationic amino acids; likely contributes to amino acid homeostasis by exporting cationic amino acids from the vacuole; member of the PQ-loop family, with seven transmembrane domains; mutant phenotype is functionally complemented by rat PQLC2 vacuolar transporter; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 14562095]; GO_component: GO:0071627 - integral component of fungal-type vacuolar membrane [Evidence IDA] [PMID 23169667]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0015326 - cationic amino acid transmembrane transporter activity [Evidence IMP,ISO] [PMID 23169667]; GO_process: GO:0006865 - amino acid transport [Evidence IEA]; GO_process: GO:0034488 - basic amino acid transmembrane export from vacuole [Evidence IMP,ISO] [PMID 23169667]; GO_process: GO:0006810 - transport [Evidence IEA]; Ypq2p 2171045 YPQ2 30037538 YPQ2 Sugiyamaella lignohabitans Ypq2p XP_018736818.1 2169804 R 796027 CDS AWJ20_5311 30037539 complement(2174009..2175709) D 1 NC_031673.1 uncharacterized protein 2175709 30037539 AWJ20_5311 Sugiyamaella lignohabitans uncharacterized protein XP_018736819.1 2174009 R 796027 CDS AWJ20_5312 30037540 complement(2183547..2183864) D 1 NC_031673.1 Protein component of the small (40S) ribosomal subunit; homologous to mammalian ribosomal protein S25, no bacterial homolog; RPS25B has a paralog, RPS25A, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0022627 - cytosolic small ribosomal subunit [Evidence IDA] [PMID 6814480]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IDA] [PMID 6814480]; GO_process: GO:0002181 - cytoplasmic translation [Evidence IC] [PMID 6814480]; ribosomal 40S subunit protein S25B 2183864 RPS25B 30037540 RPS25B Sugiyamaella lignohabitans ribosomal 40S subunit protein S25B XP_018736820.1 2183547 R 796027 CDS AWJ20_5313 30037541 2185462..2187810 D 1 NC_031673.1 nucleoporin NUP2 2187810 NUP2 30037541 NUP2 Sugiyamaella lignohabitans nucleoporin NUP2 XP_018736821.1 2185462 D 796027 CDS AWJ20_5314 30037542 complement(join(2186667..2187370,2188152..2189676)) D 1 NC_031673.1 WD-repeat protein involved in ribosome biogenesis; may interact with ribosomes; required for maturation and efficient intra-nuclear transport or pre-60S ribosomal subunits, localizes to the nucleolus; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 16221974]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IDA] [PMID 16702403]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0000027 - ribosomal large subunit assembly [Evidence IMP] [PMID 16221974]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; Rsa4p 2189676 RSA4 30037542 RSA4 Sugiyamaella lignohabitans Rsa4p XP_018736822.1 2186667 R 796027 CDS AWJ20_5315 30037543 2190194..2191138 D 1 NC_031673.1 Deoxyhypusine hydroxylase; HEAT-repeat containing metalloenzyme that catalyzes hypusine formation; binds to and is required for the modification of Hyp2p (eIF5A); complements S. pombe mmd1 mutants defective in mitochondrial positioning; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0019135 - deoxyhypusine monooxygenase activity [Evidence IEA,IEA,IEA]; GO_function: GO:0019135 - deoxyhypusine monooxygenase activity [Evidence IDA,IMP] [PMID 16371467]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004497 - monooxygenase activity [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_process: GO:0000226 - microtubule cytoskeleton organization [Evidence IGI,IMP] [PMID 14767070]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; GO_process: GO:0008612 - peptidyl-lysine modification to peptidyl-hypusine [Evidence IEA,IEA,IEA]; GO_process: GO:0008612 - peptidyl-lysine modification to peptidyl-hypusine [Evidence IDA,IMP] [PMID 16371467]; Lia1p 2191138 LIA1 30037543 LIA1 Sugiyamaella lignohabitans Lia1p XP_018736823.1 2190194 D 796027 CDS AWJ20_5316 30037544 2193127..2194512 D 1 NC_031673.1 Subunit of the cytosolic chaperonin Cct ring complex; related to Tcp1p, required for the assembly of actin and tubulins in vivo; GO_component: GO:0005832 - chaperonin-containing T-complex [Evidence IPI] [PMID 15704212]; GO_component: GO:0005832 - chaperonin-containing T-complex [Evidence IDA] [PMID 16762366]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0051082 - unfolded protein binding [Evidence IEA]; GO_function: GO:0051082 - unfolded protein binding [Evidence IDA] [PMID 16762366]; GO_process: GO:0044267 - cellular protein metabolic process [Evidence IEA]; GO_process: GO:0006457 - protein folding [Evidence IEA]; GO_process: GO:0006457 - protein folding [Evidence IDA] [PMID 16762366]; Cct5p 2194512 CCT5 30037544 CCT5 Sugiyamaella lignohabitans Cct5p XP_018736824.1 2193127 D 796027 CDS AWJ20_5317 30037545 complement(2194143..2194406) D 1 NC_031673.1 T-complex protein 1 epsilon subunit 2194406 30037545 AWJ20_5317 Sugiyamaella lignohabitans T-complex protein 1 epsilon subunit XP_018736825.1 2194143 R 796027 CDS AWJ20_5319 30037547 2196187..2197281 D 1 NC_031673.1 Component of the septin ring that is required for cytokinesis; septins are GTP-binding proteins that assemble into rod-like hetero-oligomers that can associate with other rods to form filaments; septin rings at the mother-bud neck act as scaffolds for recruiting cell division factors and as barriers to prevent diffusion of specific proteins between mother and daughter cells; GO_component: GO:0005935 - cellular bud neck [Evidence IEA]; GO_component: GO:0000144 - cellular bud neck septin ring [Evidence IDA] [PMID 3316985]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005937 - mating projection [Evidence IDA] [PMID 18552279]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005628 - prospore membrane [Evidence IDA] [PMID 24390141]; GO_component: GO:0031105 - septin complex [Evidence IEA]; GO_component: GO:0031105 - septin complex [Evidence IDA] [PMID 18550837]; GO_component: GO:0031105 - septin complex [Evidence IPI] [PMID 9813094]; GO_component: GO:0032160 - septin filament array [Evidence IDA] [PMID 15282341]; GO_function: GO:0005545 - 1-phosphatidylinositol binding [Evidence IDA] [PMID 12665577]; GO_function: GO:0005525 - GTP binding [Evidence IEA,IEA]; GO_function: GO:0005525 - GTP binding [Evidence IDA] [PMID 14597621]; GO_function: GO:0003924 - GTPase activity [Evidence IDA] [PMID 14993234]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0032947 - protein complex scaffold [Evidence IMP] [PMID 9442111]; GO_function: GO:0005198 - structural molecule activity [Evidence IDA] [PMID 18550837]; GO_process: GO:0007049 - cell cycle [Evidence IEA,IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0030011 - maintenance of cell polarity [Evidence IMP] [PMID 10882120]; GO_process: GO:0045860 - positive regulation of protein kinase activity [Evidence IDA] [PMID 14527412]; GO_process: GO:0000921 - septin ring assembly [Evidence IDA] [PMID 12636916]; GO_process: GO:0000921 - septin ring assembly [Evidence IMP] [PMID 14993234]; septin CDC12 2197281 CDC12 30037547 CDC12 Sugiyamaella lignohabitans septin CDC12 XP_018736826.1 2196187 D 796027 CDS AWJ20_5320 30037549 complement(2198015..2198815) D 1 NC_031673.1 RNA polymerase III subunit C34; interacts with TFIIIB70 and is a key determinant in pol III recruitment by the preinitiation complex; GO_component: GO:0005666 - DNA-directed RNA polymerase III complex [Evidence IDA] [PMID 10611227]; GO_component: GO:0005666 - DNA-directed RNA polymerase III complex [Evidence IDA] [PMID 3905793]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005739 - mitochondrion [Evidence IPI] [PMID 16962558]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11914276]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0003899 - DNA-directed RNA polymerase activity [Evidence IEA,IEA]; GO_function: GO:0001056 - RNA polymerase III activity [Evidence IDA] [PMID 3905793]; GO_process: GO:0042797 - tRNA transcription from RNA polymerase III promoter [Evidence IMP] [PMID 1400451]; GO_process: GO:0042797 - tRNA transcription from RNA polymerase III promoter [Evidence IDA] [PMID 3905793]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Rpc34p 2198815 RPC34 30037549 RPC34 Sugiyamaella lignohabitans Rpc34p XP_018736827.1 2198015 R 796027 CDS AWJ20_5321 30037550 complement(2199618..2200577) D 1 NC_031673.1 Cytoplasmic thioredoxin reductase; key regulatory enzyme that determines the redox state of the thioredoxin system, which acts as a disulfide reductase system and protects cells against both oxidative and reductive stress; protein abundance increases in response to DNA replication stress; TRR1 has a paralog, TRR2, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 18406344]; GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IEA]; GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IDA] [PMID 22984289]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_function: GO:0008198 - ferrous iron binding [Evidence IDA] [PMID 18406344]; GO_function: GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0004791 - thioredoxin-disulfide reductase activity [Evidence IEA,IEA]; GO_function: GO:0004791 - thioredoxin-disulfide reductase activity [Evidence IDA] [PMID 7961686]; GO_process: GO:0045454 - cell redox homeostasis [Evidence IDA,IMP] [PMID 9571241]; GO_process: GO:0034599 - cellular response to oxidative stress [Evidence IGI] [PMID 15051715]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0019430 - removal of superoxide radicals [Evidence IEA]; thioredoxin-disulfide reductase TRR1 2200577 TRR1 30037550 TRR1 Sugiyamaella lignohabitans thioredoxin-disulfide reductase TRR1 XP_018736828.1 2199618 R 796027 CDS AWJ20_5322 30037551 2204489..2206669 D 1 NC_031673.1 Mitochondrial inner membrane m-AAA protease component; mediates degradation of misfolded or unassembled proteins; also required for correct assembly of mitochondrial enzyme complexes; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0005745 - m-AAA complex [Evidence IDA] [PMID 8681382]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0097002 - mitochondrial inner boundary membrane [Evidence IDA] [PMID 19019989]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IDA] [PMID 7929327]; GO_component: GO:0031966 - mitochondrial membrane [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 11914276]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0005524 - ATP binding [Evidence IDA] [PMID 19748354]; GO_function: GO:0016887 - ATPase activity [Evidence IDA,IMP] [PMID 19748354]; GO_function: GO:0016887 - ATPase activity [Evidence ISS] [PMID 7929327]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004222 - metalloendopeptidase activity [Evidence IEA]; GO_function: GO:0008237 - metallopeptidase activity [Evidence IEA]; GO_function: GO:0008237 - metallopeptidase activity [Evidence IMP] [PMID 8681382]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_function: GO:0005515 - protein binding [Evidence IPI] [PMID 19748354]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0006461 - protein complex assembly [Evidence IMP] [PMID 8681382]; GO_process: GO:0045041 - protein import into mitochondrial intermembrane space [Evidence TAS] [PMID 12417197]; GO_process: GO:0006508 - proteolysis [Evidence IEA,IEA]; GO_process: GO:0006508 - proteolysis [Evidence IMP] [PMID 8681382]; GO_process: GO:0006465 - signal peptide processing [Evidence IMP] [PMID 12417197]; m-AAA protease subunit YTA12 2206669 YTA12 30037551 YTA12 Sugiyamaella lignohabitans m-AAA protease subunit YTA12 XP_018736829.1 2204489 D 796027 CDS AWJ20_5323 30037552 2207766..2209046 D 1 NC_031673.1 Cytosolic aspartate aminotransferase involved in nitrogen metabolism; localizes to peroxisomes in oleate-grown cells; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 9288922]; GO_component: GO:0005777 - peroxisome [Evidence IEA,IEA]; GO_component: GO:0005777 - peroxisome [Evidence IDA,IMP] [PMID 9288922]; GO_function: GO:0004069 - L-aspartate:2-oxoglutarate aminotransferase activity [Evidence IEA]; GO_function: GO:0004069 - L-aspartate:2-oxoglutarate aminotransferase activity [Evidence IDA] [PMID 1859361]; GO_function: GO:0004069 - L-aspartate:2-oxoglutarate aminotransferase activity [Evidence IMP] [PMID 9288922]; GO_function: GO:0080130 - L-phenylalanine:2-oxoglutarate aminotransferase activity [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0030170 - pyridoxal phosphate binding [Evidence IEA]; GO_function: GO:0008483 - transaminase activity [Evidence IEA,IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006532 - aspartate biosynthetic process [Evidence IMP] [PMID 15780654]; GO_process: GO:0006532 - aspartate biosynthetic process [Evidence IMP] [PMID 9288922]; GO_process: GO:0009058 - biosynthetic process [Evidence IEA]; GO_process: GO:0006520 - cellular amino acid metabolic process [Evidence IEA]; aspartate transaminase AAT2 2209046 AAT2 30037552 AAT2 Sugiyamaella lignohabitans aspartate transaminase AAT2 XP_018736830.1 2207766 D 796027 CDS AWJ20_5324 30037553 2209654..2210682 D 1 NC_031673.1 mitochondrial mRNA processing protein Cox24 (predicted) 2210682 cox24 30037553 cox24 Sugiyamaella lignohabitans mitochondrial mRNA processing protein Cox24 (predicted) XP_018736831.1 2209654 D 796027 CDS AWJ20_5325 30037554 2211921..2212844 D 1 NC_031673.1 GTPase-activating protein, putative 2212844 30037554 AWJ20_5325 Sugiyamaella lignohabitans GTPase-activating protein, putative XP_018736832.1 2211921 D 796027 CDS AWJ20_5326 30037555 2213327..2214160 D 1 NC_031673.1 Rab GTPase-activating protein; regulates endocytosis via inactivation of Vps21p at endosomes and vacuole fusion via inactivation of Ypt7p at vacuoles; also acts on Ypt52p and Sec4p; required for proper actin organization; also localizes to plasma membrane and sites of polarized growth; relocalizes from bud neck to cytoplasm upon DNA replication stress; similar to the TBC-domain Tre2 oncogene; MSB3 has a paralog, MSB4, that arose from the whole genome duplication; GO_component: GO:0005933 - cellular bud [Evidence IEA]; GO_component: GO:0005935 - cellular bud neck [Evidence IEA]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 22593206]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 22842922]; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 10679030]; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 22842922]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 22593206]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 22593206]; GO_component: GO:0000131 - incipient cellular bud site [Evidence IDA] [PMID 10679030]; GO_component: GO:0005770 - late endosome [Evidence IDA] [PMID 22593206]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 22593206]; GO_component: GO:0000133 - polarisome [Evidence IDA] [PMID 16166638]; GO_function: GO:0005096 - GTPase activator activity [Evidence IEA]; GO_function: GO:0005097 - Rab GTPase activator activity [Evidence IEA]; GO_function: GO:0005097 - Rab GTPase activator activity [Evidence IDA] [PMID 10559187]; GO_function: GO:0005097 - Rab GTPase activator activity [Evidence IDA,IMP] [PMID 22593206]; GO_process: GO:0032858 - activation of Rab GTPase activity [Evidence IDA] [PMID 22593206]; GO_process: GO:0006897 - endocytosis [Evidence IMP,IPI] [PMID 22593206]; GO_process: GO:0006887 - exocytosis [Evidence IGI] [PMID 12913108]; GO_process: GO:0070649 - formin-nucleated actin cable assembly [Evidence IGI,IPI] [PMID 16166638]; GO_process: GO:0043087 - regulation of GTPase activity [Evidence IMP] [PMID 22593206]; GO_process: GO:0032313 - regulation of Rab GTPase activity [Evidence IEA]; GO_process: GO:0032880 - regulation of protein localization [Evidence IMP,IPI] [PMID 22593206]; Msb3p 2214160 MSB3 30037555 MSB3 Sugiyamaella lignohabitans Msb3p XP_018736833.1 2213327 D 796027 CDS AWJ20_5328 30037557 complement(2214681..2215325) D 1 NC_031673.1 uncharacterized protein 2215325 30037557 AWJ20_5328 Sugiyamaella lignohabitans uncharacterized protein XP_018736834.1 2214681 R 796027 CDS AWJ20_5329 30037558 2215700..2217331 D 1 NC_031673.1 D-lactate dehydrogenase; located in the mitochondrial matrix; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA]; GO_component: GO:0005759 - mitochondrial matrix [Evidence IDA] [PMID 10509019]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0004458 - D-lactate dehydrogenase (cytochrome) activity [Evidence IEA]; GO_function: GO:0004458 - D-lactate dehydrogenase (cytochrome) activity [Evidence IDA] [PMID 10509019]; GO_function: GO:0008762 - UDP-N-acetylmuramate dehydrogenase activity [Evidence IEA]; GO_function: GO:0003779 - actin binding [Evidence IMP,IPI] [PMID 15158445]; GO_function: GO:0003779 - actin binding [Evidence IPI] [PMID 7719850]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0016614 - oxidoreductase activity, acting on CH-OH group of donors [Evidence IEA]; GO_process: GO:0006089 - lactate metabolic process [Evidence TAS] [PMID 10509019]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; Dld2p 2217331 DLD2 30037558 DLD2 Sugiyamaella lignohabitans Dld2p XP_018736835.1 2215700 D 796027 CDS AWJ20_5330 30037560 complement(2218568..2220142) D 1 NC_031673.1 Subunit of the transmembrane ring of the nuclear pore complex (NPC); contributes to nucleocytoplasmic transport, NPC biogenesis and spindle pole body duplication; homologous to human NDC1; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0031965 - nuclear membrane [Evidence IEA]; GO_component: GO:0005643 - nuclear pore [Evidence IEA,IEA]; GO_component: GO:0005643 - nuclear pore [Evidence IDA] [PMID 9864355]; GO_component: GO:0070762 - nuclear pore transmembrane ring [Evidence IDA] [PMID 10684247]; GO_component: GO:0070762 - nuclear pore transmembrane ring [Evidence IDA,IPI] [PMID 19414609]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0005816 - spindle pole body [Evidence IEA]; GO_component: GO:0005816 - spindle pole body [Evidence IDA] [PMID 9864355]; GO_function: GO:0017056 - structural constituent of nuclear pore [Evidence IC] [PMID 10684247]; GO_process: GO:0051028 - mRNA transport [Evidence IEA]; GO_process: GO:0006999 - nuclear pore organization [Evidence IGI,IMP] [PMID 15075274]; GO_process: GO:0006999 - nuclear pore organization [Evidence IGI,IMP] [PMID 16682526]; GO_process: GO:0006913 - nucleocytoplasmic transport [Evidence IC] [PMID 9864355]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0030474 - spindle pole body duplication [Evidence IMP] [PMID 15075274]; GO_process: GO:0030474 - spindle pole body duplication [Evidence IMP] [PMID 8349727]; GO_process: GO:0006810 - transport [Evidence IEA]; Ndc1p 2220142 NDC1 30037560 NDC1 Sugiyamaella lignohabitans Ndc1p XP_018736836.1 2218568 R 796027 CDS AWJ20_5331 30037561 complement(2222168..2226070) D 1 NC_031673.1 Component of transport protein particle (TRAPP) complex II; TRAPPII is a multimeric guanine nucleotide-exchange factor for the GTPase Ypt1p, regulating intra-Golgi and endosome-Golgi traffic; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA,IEA]; GO_component: GO:1990071 - TRAPPII protein complex [Evidence IDA] [PMID 11239471]; GO_component: GO:0005769 - early endosome [Evidence IDA] [PMID 16314430]; GO_component: GO:0005802 - trans-Golgi network [Evidence IDA] [PMID 16314430]; GO_function: GO:0017112 - Rab guanyl-nucleotide exchange factor activity [Evidence IMP] [PMID 17041589]; GO_process: GO:0034498 - early endosome to Golgi transport [Evidence IMP] [PMID 16314430]; GO_process: GO:0006891 - intra-Golgi vesicle-mediated transport [Evidence IMP] [PMID 11239471]; GO_process: GO:0032313 - regulation of Rab GTPase activity [Evidence IMP] [PMID 17041589]; GO_process: GO:0006810 - transport [Evidence IEA]; Trs120p 2226070 TRS120 30037561 TRS120 Sugiyamaella lignohabitans Trs120p XP_018736837.1 2222168 R 796027 CDS AWJ20_5332 30037562 2226840..2230454 D 1 NC_031673.1 Subunit of the SEA (Seh1-associated) complex; SEA is a coatomer-related complex that associates dynamically with the vacuole; null mutation suppresses cdc13-1 temperature sensitivity; has N-terminal WD-40 repeats and a C-terminal RING motif; GO_component: GO:0035859 - Seh1-associated complex [Evidence IDA] [PMID 21454883]; GO_component: GO:0097042 - extrinsic component of fungal-type vacuolar membrane [Evidence IDA] [PMID 21454883]; GO_component: GO:0000324 - fungal-type vacuole [Evidence IDA] [PMID 14562095]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IDA] [PMID 16702403]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Rtc1p 2230454 RTC1 30037562 RTC1 Sugiyamaella lignohabitans Rtc1p XP_018736838.1 2226840 D 796027 CDS AWJ20_5333 30037563 2230831..2231583 D 1 NC_031673.1 Subunit of heterotrimeric Replication Protein A (RPA); RPA is a highly conserved single-stranded DNA binding protein involved in DNA replication, repair, and recombination; in concert with Sgs1p-Top2p-Rmi1p, stimulates DNA catenation/decatenation activity of Top3p; protein abundance increases in response to DNA replication stress; GO_component: GO:0005662 - DNA replication factor A complex [Evidence IDA] [PMID 2554144]; GO_component: GO:0000781 - chromosome, telomeric region [Evidence IMP] [PMID 14702040]; GO_component: GO:0000794 - condensed nuclear chromosome [Evidence IDA] [PMID 9679065]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0003690 - double-stranded DNA binding [Evidence IDA] [PMID 7761422]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 7761422]; GO_function: GO:0003697 - single-stranded DNA binding [Evidence IDA] [PMID 8804316]; GO_process: GO:0006281 - DNA repair [Evidence IMP] [PMID 9093844]; GO_process: GO:0006260 - DNA replication [Evidence IEA]; GO_process: GO:0006260 - DNA replication [Evidence IMP] [PMID 9093844]; GO_process: GO:0006265 - DNA topological change [Evidence IDA] [PMID 22885009]; GO_process: GO:0006268 - DNA unwinding involved in DNA replication [Evidence IDA] [PMID 2554144]; GO_process: GO:0000724 - double-strand break repair via homologous recombination [Evidence IGI] [PMID 9679065]; GO_process: GO:0045184 - establishment of protein localization [Evidence IMP] [PMID 14702040]; GO_process: GO:0030491 - heteroduplex formation [Evidence IDA] [PMID 12226081]; GO_process: GO:0006312 - mitotic recombination [Evidence IPI] [PMID 2554144]; GO_process: GO:0006289 - nucleotide-excision repair [Evidence IDA,IMP] [PMID 8910442]; GO_process: GO:0016567 - protein ubiquitination [Evidence IPI] [PMID 18342608]; GO_process: GO:0007131 - reciprocal meiotic recombination [Evidence IPI] [PMID 2554144]; GO_process: GO:0000722 - telomere maintenance via recombination [Evidence IPI] [PMID 2554144]; GO_process: GO:0007004 - telomere maintenance via telomerase [Evidence IMP] [PMID 14702040]; GO_process: GO:0010833 - telomere maintenance via telomere lengthening [Evidence IMP] [PMID 22354040]; Rfa2p 2231583 RFA2 30037563 RFA2 Sugiyamaella lignohabitans Rfa2p XP_018736839.1 2230831 D 796027 CDS AWJ20_5334 30037564 complement(2232233..2236735) D 1 NC_031673.1 E3 ubiquitin-protein ligase IRC20 2236735 IRC20 30037564 IRC20 Sugiyamaella lignohabitans E3 ubiquitin-protein ligase IRC20 XP_018736840.1 2232233 R 796027 CDS AWJ20_5335 30037565 2237645..2239081 D 1 NC_031673.1 C-24(28) sterol reductase; catalyzes the final step in ergosterol biosynthesis; mutants are viable, but lack ergosterol; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 10722850]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA,IEA]; GO_function: GO:0000246 - delta24(24-1) sterol reductase activity [Evidence IEA]; GO_function: GO:0000246 - delta24(24-1) sterol reductase activity [Evidence IDA] [PMID 14922]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0016628 - oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor [Evidence IEA]; GO_process: GO:0006696 - ergosterol biosynthetic process [Evidence IMP] [PMID 8125337]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0006694 - steroid biosynthetic process [Evidence IEA]; GO_process: GO:0008202 - steroid metabolic process [Evidence IEA]; GO_process: GO:0016126 - sterol biosynthetic process [Evidence IEA,IEA]; delta(24(24(1)))-sterol reductase 2239081 ERG4 30037565 ERG4 Sugiyamaella lignohabitans delta(24(24(1)))-sterol reductase XP_018736841.1 2237645 D 796027 CDS AWJ20_5336 30037566 complement(2239292..2240302) D 1 NC_031673.1 Essential protein involved in maturation of 18S rRNA; depletion leads to inhibited pre-rRNA processing and reduced polysome levels; localizes primarily to the nucleolus; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0030532 - small nuclear ribonucleoprotein complex [Evidence TAS] [PMID 10690410]; GO_component: GO:0005732 - small nucleolar ribonucleoprotein complex [Evidence TAS] [PMID 10690410]; GO_function: GO:0003723 - RNA binding [Evidence IDA] [PMID 9814757]; GO_process: GO:0000154 - rRNA modification [Evidence TAS] [PMID 10690410]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0006364 - rRNA processing [Evidence TAS] [PMID 10690410]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; Lcp5p 2240302 LCP5 30037566 LCP5 Sugiyamaella lignohabitans Lcp5p XP_018736842.1 2239292 R 796027 CDS AWJ20_5337 30037567 2240765..2241550 D 1 NC_031673.1 Protein constituent of 66S pre-ribosomal particles; contributes to processing of the 27S pre-rRNA; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 10684247]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 11583614]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 16861225]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 17443350]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 22735702]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0000466 - maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 16861225]; GO_process: GO:0000463 - maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 16861225]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0042273 - ribosomal large subunit biogenesis [Evidence IMP,IPI] [PMID 11583614]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; Nsa2p 2241550 NSA2 30037567 NSA2 Sugiyamaella lignohabitans Nsa2p XP_018736843.1 2240765 D 796027 CDS AWJ20_5338 30037568 complement(2242278..2246336) D 1 NC_031673.1 Plasma membrane ATP-binding cassette (ABC) transporter; required for the export of a-factor, catalyzes ATP hydrolysis coupled to a-factor transport; contains 12 transmembrane domains and two ATP binding domains; expressed only in MATa cells; GO_component: GO:0005794 - Golgi apparatus [Evidence IDA] [PMID 8045256]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 12374868]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 7679674]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 7679674]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016887 - ATPase activity [Evidence IEA]; GO_function: GO:0042626 - ATPase activity, coupled to transmembrane movement of substances [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_function: GO:0015440 - peptide-transporting ATPase activity [Evidence IDA,IMP] [PMID 11389139]; GO_function: GO:0015440 - peptide-transporting ATPase activity [Evidence IDA,IMP] [PMID 8626301]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA,IEA]; GO_process: GO:0000770 - peptide pheromone export [Evidence IMP] [PMID 2569166]; GO_process: GO:0019236 - response to pheromone [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; ATP-binding cassette alpha-factor transporter STE6 2246336 STE6 30037568 STE6 Sugiyamaella lignohabitans ATP-binding cassette alpha-factor transporter STE6 XP_018736844.1 2242278 R 796027 CDS AWJ20_5339 30037569 complement(2249030..2250688) D 1 NC_031673.1 uncharacterized protein 2250688 30037569 AWJ20_5339 Sugiyamaella lignohabitans uncharacterized protein XP_018736845.1 2249030 R 796027 CDS AWJ20_5340 30037571 2253950..2255044 D 1 NC_031673.1 reverse transcriptase 2255044 30037571 AWJ20_5340 Sugiyamaella lignohabitans reverse transcriptase XP_018736846.1 2253950 D 796027 CDS AWJ20_5341 30037572 2258918..2262253 D 1 NC_031673.1 Forkhead transcription factor; drives S-phase specific expression of genes involved in chromosome segregation, spindle dynamics, and budding; suppressor of calmodulin mutants with specific SPB assembly defects; telomere maintenance role; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 20847055]; GO_component: GO:0000790 - nuclear chromatin [Evidence IDA] [PMID 12464632]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 19159085]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 20847055]; GO_component: GO:0005667 - transcription factor complex [Evidence IBA]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0003705 - RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity [Evidence IBA]; GO_function: GO:0003690 - double-stranded DNA binding [Evidence IBA]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19111667]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA,IMP] [PMID 9920414]; GO_function: GO:0003700 - sequence-specific DNA binding transcription factor activity [Evidence IEA]; GO_function: GO:0008134 - transcription factor binding [Evidence IBA]; GO_process: GO:0034599 - cellular response to oxidative stress [Evidence IMP] [PMID 20847055]; GO_process: GO:0007005 - mitochondrion organization [Evidence IMP] [PMID 20847055]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IDA] [PMID 8441413]; GO_process: GO:0051090 - regulation of sequence-specific DNA binding transcription factor activity [Evidence IBA]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA,IEA]; GO_process: GO:0051300 - spindle pole body organization [Evidence IGI] [PMID 9920414]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Hcm1p 2262253 HCM1 30037572 HCM1 Sugiyamaella lignohabitans Hcm1p XP_018736847.1 2258918 D 796027 CDS AWJ20_5344 30037575 complement(2265491..2267089) D 1 NC_031673.1 Plasma membrane low glucose sensor, regulates glucose transport; contains 12 predicted transmembrane segments and a long C-terminal tail required for induction of hexose transporters; also senses fructose and mannose; SNF3 has a paralog, RGT2, that arose from the whole genome duplication; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 2406560]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 24124599]; GO_function: GO:0005536 - glucose binding [Evidence TAS] [PMID 10477308]; GO_function: GO:0005355 - glucose transmembrane transporter activity [Evidence TAS] [PMID 10477308]; GO_function: GO:0004872 - receptor activity [Evidence TAS] [PMID 10477308]; GO_function: GO:0022891 - substrate-specific transmembrane transporter activity [Evidence IEA]; GO_function: GO:0022857 - transmembrane transporter activity [Evidence IEA]; GO_function: GO:0005215 - transporter activity [Evidence IEA]; GO_process: GO:0008643 - carbohydrate transport [Evidence IEA]; GO_process: GO:0051594 - detection of glucose [Evidence IGI,IMP] [PMID 8901598]; GO_process: GO:0015755 - fructose transport [Evidence IMP] [PMID 2046678]; GO_process: GO:0015758 - glucose transport [Evidence IMP] [PMID 2046678]; GO_process: GO:0015758 - glucose transport [Evidence IGI] [PMID 9564039]; GO_process: GO:0015761 - mannose transport [Evidence IMP] [PMID 2046678]; GO_process: GO:0045835 - negative regulation of meiosis [Evidence IMP] [PMID 18616605]; GO_process: GO:0007165 - signal transduction [Evidence TAS] [PMID 10477308]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; Snf3p 2267089 SNF3 30037575 SNF3 Sugiyamaella lignohabitans Snf3p XP_018736848.1 2265491 R 796027 CDS AWJ20_5345 30037576 join(2265585..2265640,2265688..2266759) D 1 NC_031673.1 uncharacterized protein 2266759 30037576 AWJ20_5345 Sugiyamaella lignohabitans uncharacterized protein XP_018736849.1 2265585 D 796027 CDS AWJ20_5346 30037577 complement(2272215..2273804) D 1 NC_031673.1 Plasma membrane low glucose sensor, regulates glucose transport; contains 12 predicted transmembrane segments and a long C-terminal tail required for induction of hexose transporters; also senses fructose and mannose; SNF3 has a paralog, RGT2, that arose from the whole genome duplication; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 2406560]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 24124599]; GO_function: GO:0005536 - glucose binding [Evidence TAS] [PMID 10477308]; GO_function: GO:0005355 - glucose transmembrane transporter activity [Evidence TAS] [PMID 10477308]; GO_function: GO:0004872 - receptor activity [Evidence TAS] [PMID 10477308]; GO_function: GO:0022891 - substrate-specific transmembrane transporter activity [Evidence IEA]; GO_function: GO:0022857 - transmembrane transporter activity [Evidence IEA]; GO_function: GO:0005215 - transporter activity [Evidence IEA]; GO_process: GO:0008643 - carbohydrate transport [Evidence IEA]; GO_process: GO:0051594 - detection of glucose [Evidence IGI,IMP] [PMID 8901598]; GO_process: GO:0015755 - fructose transport [Evidence IMP] [PMID 2046678]; GO_process: GO:0015758 - glucose transport [Evidence IMP] [PMID 2046678]; GO_process: GO:0015758 - glucose transport [Evidence IGI] [PMID 9564039]; GO_process: GO:0015761 - mannose transport [Evidence IMP] [PMID 2046678]; GO_process: GO:0045835 - negative regulation of meiosis [Evidence IMP] [PMID 18616605]; GO_process: GO:0007165 - signal transduction [Evidence TAS] [PMID 10477308]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; Snf3p 2273804 SNF3 30037577 SNF3 Sugiyamaella lignohabitans Snf3p XP_018736850.1 2272215 R 796027 CDS