-- dump date 20140620_080603 -- class Genbank::CDS -- table cds_note -- id note YP_004790563.1 SMART: Chromosomal replication initiator, DnaA C-terminal; ATPase, AAA+ type, core; TIGRFAM: Chromosomal replication control, initiator DnaA; KEGG: sml:Smlt0001 chromosomal replication initiation protein; HAMAP: Chromosomal replication control, initiator DnaA; PFAM: Chromosomal replication control, initiator (DnaA)/regulator (Hda); Chromosomal replication initiator, DnaA C-terminal YP_004790564.1 SMART: DNA polymerase III, beta chain; TIGRFAM: DNA polymerase III, beta chain; KEGG: sml:Smlt0002 DNA polymerase III subunit beta; PFAM: DNA polymerase III, beta chain YP_004790565.1 TIGRFAM: DNA-binding, RecF; HAMAP: DNA replication and repair protein recF; KEGG: sml:Smlt0004 recombination protein F; PFAM: RecF/RecN/SMC protein, N-terminal YP_004790566.1 SMART: DNA topoisomerase, type IIA, subunit B or N-terminal; ATP-binding region, ATPase-like; TIGRFAM: DNA gyrase, subunit B; KEGG: sml:Smlt0005 DNA gyrase subunit B; PFAM: DNA topoisomerase, type IIA, subunit B, region 2; ATP-binding region, ATPase-like; Toprim domain; DNA topoisomerase, type IIA, subunit B, C-terminal YP_004790567.1 PFAM: Abortive infection protein; KEGG: smt:Smal_0005 abortive infection protein YP_004790568.1 PFAM: Peptidase M48, Ste24p; KEGG: smt:Smal_0006 peptidase M48 Ste24p YP_004790569.1 PFAM: Tetratricopeptide TPR-1; Tetratricopeptide TPR-4; KEGG: sml:Smlt0008 hypothetical protein YP_004790570.1 KEGG: smt:Smal_0008 TonB family protein; TIGRFAM: TonB, C-terminal; PFAM: Gram-negative bacterial tonB protein YP_004790571.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: sml:Smlt0010 biopolymer transport ExbB protein YP_004790572.1 PFAM: Biopolymer transport protein ExbD/TolR; KEGG: sml:Smlt0011 biopolymer transport ExbD1 protein YP_004790573.1 PFAM: Biopolymer transport protein ExbD/TolR; KEGG: sml:Smlt0012 biopolymer transport ExbD2 protein YP_004790574.1 KEGG: smt:Smal_0012 phospholipase D/transphosphatidylase; PFAM: Phospholipase D/Transphosphatidylase; SMART: Phospholipase D/Transphosphatidylase YP_004790575.1 KEGG: sml:Smlt0014 hypothetical protein YP_004790576.1 PFAM: Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ; TIGRFAM: Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ; HAMAP: Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ; KEGG: sml:Smlt0015 pyridoxine 5'-phosphate synthase YP_004790577.1 KEGG: smt:Smal_0015 radical SAM domain-containing protein; PFAM: Radical SAM; SMART: Elongator protein 3/MiaB/NifB YP_004790578.1 KEGG: sml:Smlt0045 hypothetical protein YP_004790580.1 KEGG: smt:Smal_0019 hypothetical protein YP_004790581.1 HAMAP: Fructose-1,6-bisphosphatase; KEGG: smt:Smal_0020 fructose-1,6-bisphosphatase; PFAM: Fructose-1,6-bisphosphatase YP_004790582.1 KEGG: smt:Smal_0021 aromatic amino acid aminotransferase; PFAM: Aminotransferase, class I/II YP_004790583.1 PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: sml:Smlt0049 iron transporter protein YP_004790584.1 KEGG: smt:Smal_0023 hypothetical protein YP_004790585.1 KEGG: sml:Smlt0051 hypothetical protein YP_004790586.1 SMART: DNA helicase, ATP-dependent, Ku type; TIGRFAM: Ku, prokaryotic type; KEGG: sml:Smlt0052 Ku domain-containing protein; HAMAP: DNA repair protein; PFAM: DNA helicase, ATP-dependent, Ku type YP_004790587.1 KEGG: sml:Smlt0053 ATP-dependent DNA ligase; TIGRFAM: DNA ligase D; DNA polymerase LigD, ligase region; DNA ligase D, 3'-phosphoesterase domain; DNA polymerase LigD, polymerase domain; PFAM: ATP dependent DNA ligase, central; ATP dependent DNA ligase, C-terminal; DNA primase, small subunit YP_004790588.1 KEGG: smt:Smal_0027 hypothetical protein YP_004790589.1 PFAM: Alcohol dehydrogenase GroES-like; Alcohol dehydrogenase, zinc-binding; KEGG: smt:Smal_0028 alcohol dehydrogenase GroES domain-containing protein YP_004790590.1 TIGRFAM: KDPG/KHG aldolase; KEGG: sml:Smlt0073 khg/kdpg aldolase; PFAM: KDPG/KHG aldolase YP_004790591.1 PFAM: Cysteine dioxygenase type I; KEGG: sml:Smlt0074 cysteine dioxygenase type I YP_004790592.1 KEGG: sml:Smlt0075 LacI family transcriptional regulator; PFAM: Periplasmic binding protein/LacI transcriptional regulator; HTH transcriptional regulator, LacI; SMART: HTH transcriptional regulator, LacI YP_004790593.1 TIGRFAM: Phenylalanine-4-hydroxylase, monomeric form; KEGG: smt:Smal_0032 phenylalanine 4-monooxygenase; PFAM: Aromatic amino acid hydroxylase, C-terminal YP_004790594.1 KEGG: smt:Smal_0033 AsnC family transcriptional regulator; PFAM: Transcription regulator, AsnC-type, C-terminal; SMART: Transcription regulator, AsnC-type YP_004790595.1 PFAM: Patatin; KEGG: sml:Smlt0080 patatin-like phospholipase YP_004790596.1 KEGG: smt:Smal_0036 hypothetical protein; TIGRFAM: Protein of unknown function DUF124; PFAM: Protein of unknown function DUF124 YP_004790597.1 PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: sml:Smlt0083 TonB dependent receptor protein YP_004790598.1 PFAM: Phosphatidic acid phosphatase type 2/haloperoxidase; KEGG: sml:Smlt0084 phosphatase; SMART: Phosphatidic acid phosphatase type 2/haloperoxidase YP_004790599.1 KEGG: smt:Smal_0039 hypothetical protein YP_004790600.1 KEGG: smt:Smal_0040 hypothetical protein YP_004790601.1 KEGG: sml:Smlt0087 ATP-binding component of ABC transporter protein; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core YP_004790602.1 PFAM: Fatty acid desaturase, type 1; KEGG: smt:Smal_0042 fatty acid desaturase YP_004790603.1 KEGG: sml:Smlt0089 hypothetical protein YP_004790604.1 KEGG: smt:Smal_0044 hypothetical protein YP_004790605.1 PFAM: DNA glycosylase/AP lyase, catalytic domain; DNA glycosylase/AP lyase, H2TH DNA-binding; TIGRFAM: DNA glycosylase/AP lyase; HAMAP: Formamidopyrimidine-DNA glycosylase; KEGG: sml:Smlt0090b formamidopyrimidine-DNA glycosylase YP_004790606.1 KEGG: smt:Smal_0046 glucan biosynthesis protein D; HAMAP: Glucans biosynthesis protein D; PFAM: Glucan biosynthesis, periplasmic, MdoG C-terminal YP_004790607.1 HAMAP: Thymidine kinase, subgroup; KEGG: sml:Smlt0092 thymidine kinase; PFAM: Thymidine kinase YP_004790608.1 KEGG: smt:Smal_0048 hypothetical protein YP_004790609.1 PFAM: Sel1-like; KEGG: psu:Psesu_2903 hypothetical protein YP_004790610.1 KEGG: smt:Smal_0050 ATP-dependent DNA helicase Rep; TIGRFAM: DNA helicase, ATP-dependent, RepA type; PFAM: DNA helicase, UvrD/REP type YP_004790611.1 KEGG: sml:Smlt0096 hypothetical protein YP_004790612.1 KEGG: smt:Smal_0052 hypothetical protein; HAMAP: Protein of unknown function DUF480; PFAM: Protein of unknown function DUF480 YP_004790613.1 KEGG: sml:Smlt0098 lipoprotein E; TIGRFAM: 5-nucleotidase lipoprotein e(P4); PFAM: Acid phosphatase (Class B) YP_004790614.1 TIGRFAM: Orotidine 5'-phosphate decarboxylase, subfamily 1, core; KEGG: smt:Smal_0054 orotidine 5'-phosphate decarboxylase; PFAM: Orotidine 5'-phosphate decarboxylase, core YP_004790615.1 PFAM: Peptidase S1/S6, chymotrypsin/Hap; KEGG: fgr:FG11164.1 hypothetical protein; SMART: Peptidase S1/S6, chymotrypsin/Hap YP_004790616.1 KEGG: sml:Smlt0101 hypothetical protein YP_004790617.1 SMART: Phospholipid/glycerol acyltransferase; TIGRFAM: glycerol-3-phosphate O-acyltransferase; KEGG: smt:Smal_0056 glycerol-3-phosphate acyltransferase; HAMAP: Glycerol-3-phosphate acyltransferase; PFAM: Phospholipid/glycerol acyltransferase YP_004790618.1 PFAM: Protein of unknown function DUF465; KEGG: smt:Smal_0057 hypothetical protein YP_004790619.1 KEGG: sml:Smlt0103 hypothetical protein; HAMAP: tRNA 2-thiocytidine biosynthesis protein TtcA; PFAM: PP-loop YP_004790620.1 KEGG: smt:Smal_0059 recombination associated protein; HAMAP: Recombination-associated protein rdgC; PFAM: exonuclease, RdgC YP_004790621.1 PFAM: Protein of unknown function DUF45; KEGG: sml:Smlt0105 hypothetical protein YP_004790622.1 KEGG: sml:Smlt0106 methylglyoxal synthase YP_004790623.1 KEGG: smt:Smal_0062 multi-sensor hybrid histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; PAS fold-3; Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region; ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region YP_004790624.1 TIGRFAM: Glutamate synthase, NADH/NADPH, small subunit 2; KEGG: sml:Smlt0108 glutamate synthase subunit beta; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_004790625.1 KEGG: sml:Smlt0109 glutamate synthase subunit alpha; PFAM: Glutamate synthase, central-C; Glutamine amidotransferase, class-II; Glutamate synthase, central-N; Glutamate synthase, alpha subunit, C-terminal YP_004790626.1 KEGG: smt:Smal_0065 hypothetical protein YP_004790627.1 KEGG: sml:Smlt0110 viral-like DNA topoisomerase YP_004790628.1 KEGG: sml:Smlt0111 hypothetical protein YP_004790629.1 KEGG: smt:Smal_0068 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR YP_004790630.1 KEGG: smt:Smal_0069 hypothetical protein YP_004790631.1 KEGG: sml:Smlt0114 hypothetical protein YP_004790632.1 PFAM: Beta-lactamase-related; KEGG: sml:Smlt0115 beta-lactamase precursor YP_004790633.1 PFAM: Penicillinase repressor; KEGG: sml:Smlt0116 transcriptional regulator YP_004790634.1 PFAM: Peptidase M56, BlaR1; KEGG: smt:Smal_0077 peptidase M56 BlaR1 YP_004790635.1 KEGG: sml:Smlt0118 hypothetical protein YP_004790636.1 KEGG: smt:Smal_0079 hypothetical protein YP_004790637.1 KEGG: smt:Smal_0080 DEAD/DEAH box helicase domain-containing protein; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; DNA/RNA helicase, C-terminal; Protein of unknown function DUF1998; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal YP_004790639.1 KEGG: smt:Smal_0081 hypothetical protein YP_004790640.1 KEGG: smt:Smal_0082 hypothetical protein YP_004790641.1 KEGG: smt:Smal_0083 hypothetical protein YP_004790642.1 KEGG: sml:Smlt0124 transmembrane protein YP_004790643.1 TIGRFAM: Double-transmembrane region, N-terminal; KEGG: sml:Smlt0125 hypothetical protein YP_004790644.1 PFAM: Protein of unknown function DUF58; KEGG: smt:Smal_0086 hypothetical protein YP_004790645.1 PFAM: ATPase associated with various cellular activities, AAA-3; KEGG: smt:Smal_0087 ATPase YP_004790646.1 KEGG: sml:Smlt0128 hypothetical protein YP_004790647.1 PFAM: Peptidase U62, modulator of DNA gyrase; KEGG: sml:Smlt0129 modulator of DNA gyrase YP_004790648.1 PFAM: Peptidase U62, modulator of DNA gyrase; KEGG: smt:Smal_0090 peptidase U62 modulator of DNA gyrase YP_004790649.1 PFAM: Peptidase U62, modulator of DNA gyrase; KEGG: sml:Smlt0131 peptidase/modulator of DNA gyrase YP_004790650.1 PFAM: Protein of unknown function DUF938; KEGG: smt:Smal_0092 hypothetical protein YP_004790651.1 PFAM: Pyruvate/ketoisovalerate oxidoreductase; KEGG: smt:Smal_0095 indolepyruvate ferredoxin oxidoreductase YP_004790652.1 KEGG: sml:Smlt0137 hypothetical protein YP_004790653.1 KEGG: smt:Smal_0097 ATPase AAA; PFAM: ATPase, AAA-type, core; SMART: ATPase, AAA+ type, core YP_004790654.1 KEGG: smt:Smal_0098 partition protein YP_004790655.1 PFAM: Phosphoglycerate mutase; KEGG: smt:Smal_0099 phosphohistidine phosphatase, SixA YP_004790656.1 PFAM: Lipid/polyisoprenoid-binding, YceI-like; KEGG: sml:Smlt0141 hypothetical protein YP_004790657.1 KEGG: smt:Smal_0101 phospholipase D/transphosphatidylase; PFAM: Phospholipase D/Transphosphatidylase; SMART: Phospholipase D/Transphosphatidylase YP_004790658.1 KEGG: smt:Smal_0102 thioesterase superfamily protein; TIGRFAM: Phenylacetic acid degradation-related protein; PFAM: Thioesterase superfamily YP_004790659.1 KEGG: sml:Smlt0144 transmembrane acetyltransferase; PFAM: Phospholipid/glycerol acyltransferase; SMART: Phospholipid/glycerol acyltransferase YP_004790660.1 KEGG: smt:Smal_0104 hypothetical protein YP_004790661.1 KEGG: smt:Smal_0105 TPR repeat-containing protein; PFAM: Tetratricopeptide TPR2; Tetratricopeptide TPR-1; SMART: Tetratricopeptide repeat YP_004790662.1 KEGG: smt:Smal_0106 PEBP family protein; TIGRFAM: YbhB/YbcL; PFAM: Phosphatidylethanolamine-binding protein PEBP YP_004790663.1 PFAM: Domain of unknown function DUF306, Meta/HslJ; KEGG: sml:Smlt0148 hypothetical protein YP_004790664.1 PFAM: Domain of unknown function DUF306, Meta/HslJ; KEGG: sml:Smlt0149 hypothetical protein YP_004790665.1 KEGG: smt:Smal_0108 UDP pyrophosphate phosphatase; HAMAP: UDP-diphosphatase; PFAM: Bacitracin resistance protein BacA YP_004790666.1 KEGG: smt:Smal_0109 glutamine synthetase; TIGRFAM: Glutamine synthetase type I; PFAM: Glutamine synthetase, catalytic region; Glutamine synthetase, beta-Grasp YP_004790667.1 PFAM: Nitrogen regulatory protein PII; KEGG: smt:Smal_0110 nitrogen regulatory protein P-II YP_004790668.1 KEGG: smt:Smal_0111 ammonium transporter; TIGRFAM: Ammonium transporter; PFAM: Ammonium transporter YP_004790669.1 KEGG: sml:Smlt0154 N-acetylmuramoyl-L-alanine amidase; PFAM: N-acetylmuramoyl-L-alanine amidase, family 2; SMART: N-acetylmuramoyl-L-alanine amidase, family 2 YP_004790670.1 PFAM: MltA; 3D; KEGG: sml:Smlt0155 murein degrading transcglycosylase YP_004790671.1 KEGG: sml:Smlt0156 hypothetical protein YP_004790672.1 TIGRFAM: Addiction module antidote protein, HigA; PFAM: Helix-turn-helix type 3; KEGG: xfn:XfasM23_1425 XRE family plasmid maintenance system antidote protein; SMART: Helix-turn-helix type 3 YP_004790673.1 PFAM: Plasmid maintenance system killer; KEGG: dak:DaAHT2_1407 plasmid maintenance system killer YP_004790674.1 KEGG: sml:Smlt0158 nitrogen regulation protein NR(II); PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; PAS fold-4; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region YP_004790675.1 TIGRFAM: Signal transduction response regulator, nitrogen regulation NR(I); PFAM: RNA polymerase sigma factor 54, interaction; Signal transduction response regulator, receiver region; Helix-turn-helix, Fis-type; KEGG: smt:Smal_0123 nitrogen metabolism transcriptional regulator, NtrC, fis family; SMART: Signal transduction response regulator, receiver region; ATPase, AAA+ type, core YP_004790676.1 PFAM: Superoxide dismutase, copper/zinc binding; KEGG: sml:Smlt0160 superoxide dismutase YP_004790677.1 PFAM: Superoxide dismutase, copper/zinc binding; KEGG: sml:Smlt0161 superoxide dismutase YP_004790678.1 KEGG: sml:Smlt0163 hypothetical protein YP_004790679.1 KEGG: sml:Smlt0164 acetyl-CoA acetyltransferase; TIGRFAM: Thiolase YP_004790680.1 PFAM: HemY, N-terminal; KEGG: smt:Smal_0129 HemY domain-containing protein YP_004790681.1 KEGG: sml:Smlt0166 uroporphyrinogen III C-methyltransferase HemX YP_004790682.1 PFAM: Tetrapyrrole biosynthesis, uroporphyrinogen III synthase; KEGG: smt:Smal_0131 uroporphyrinogen-III synthase YP_004790683.1 KEGG: sml:Smlt0168 hypothetical protein; TIGRFAM: Thioesterase, PFAM: Thioesterase YP_004790684.1 KEGG: sml:Smlt0169 hypothetical protein YP_004790685.1 manually curated; PFAM: Rhodanese-like; KEGG: sml:Smlt0170 hypothetical protein; SMART: Rhodanese-like YP_004790686.1 KEGG: sml:Smlt0171 preprotein translocase subunit SecB; TIGRFAM: Bacterial protein export chaperone SecB; PFAM: Bacterial protein export chaperone SecB YP_004790687.1 KEGG: smt:Smal_0136 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; HAMAP: Glycerol-3-phosphate dehydrogenase [NAD(P)+]; PFAM: NAD-dependent glycerol-3-phosphate dehydrogenase, N-terminal; NAD-dependent glycerol-3-phosphate dehydrogenase, C-terminal YP_004790688.1 KEGG: sml:Smlt0173 hypothetical protein YP_004790689.1 KEGG: xop:PXO_03212 hypothetical protein YP_004790690.1 KEGG: xca:xccb100_4425 acetyltransferase (GNAT) family protein; manually curated; PFAM: GCN5-related N-acetyltransferase YP_004790691.1 PFAM: Phage Tail Collar; KEGG: nha:Nham_1014 phage tail collar YP_004790692.1 PFAM: Phage Tail Collar; KEGG: nha:Nham_1013 phage tail collar YP_004790693.1 PFAM: Phage Tail Collar; KEGG: sit:TM1040_3286 phage tail collar YP_004790694.1 KEGG: xcb:XC_4290 hemagglutinin; TIGRFAM: Outer membrane autotransporter barrel; PFAM: Autotransporter beta-domain; Ig YP_004790695.1 KEGG: sml:Smlt0174 hypothetical protein YP_004790696.1 manually curated; KEGG: sml:Smlt0175 hypothetical protein YP_004790698.1 KEGG: smt:Smal_0141 hypothetical protein YP_004790699.1 KEGG: smt:Smal_0142 hypothetical protein YP_004790700.1 KEGG: sml:Smlt0183 hypothetical protein YP_004790701.1 KEGG: sml:Smlt0184 hypothetical protein YP_004790702.1 SMART: Helix-turn-helix, AraC domain; KEGG: smt:Smal_0145 AraC family transcriptional regulator YP_004790703.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sml:Smlt0186 glyoxalase/bleomycin resistance protein YP_004790704.1 KEGG: smt:Smal_0147 Dyp-type peroxidase family; TIGRFAM: Dyp-type peroxidase; PFAM: Dyp-type peroxidase YP_004790705.1 KEGG: smt:Smal_0148 hypothetical protein YP_004790706.1 KEGG: sml:Smlt0189 transmembrane transporter protein; TIGRFAM: Nicotinamide mononucleotide transporter PnuC; PFAM: Nicotinamide mononucleotide transporter PnuC YP_004790707.1 KEGG: smt:Smal_0150 TonB-dependent siderophore receptor; TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug YP_004790708.1 PFAM: Aminoglycoside phosphotransferase; KEGG: sml:Smlt0191 aminoglycoside phosphotransferase YP_004790709.1 PFAM: Rickettsia 17kDa surface antigen; KEGG: smt:Smal_0152 17 kDa surface antigen YP_004790710.1 PFAM: Peptidoglycan binding-like; KEGG: smt:Smal_0153 peptidoglycan-binding domain 1 protein YP_004790711.1 KEGG: smt:Smal_0154 hypothetical protein YP_004790712.1 KEGG: smt:Smal_0155 two component LuxR family transcriptional regulator; PFAM: Signal transduction response regulator, receiver region; Transcription regulator LuxR, C-terminal; SMART: Signal transduction response regulator, receiver region; Transcription regulator LuxR, C-terminal YP_004790713.1 KEGG: smt:Smal_0156 multi-sensor hybrid histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; Extracellular solute-binding protein, family 3; PAS fold-3; Signal transduction response regulator, receiver region; Signal transduction histidine kinase, phosphotransfer (Hpt) region; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; Extracellular solute-binding protein, family 3; Signal transduction response regulator, receiver region YP_004790714.1 PFAM: Cytochrome c, class I; KEGG: sml:Smlt0197 cytochrome c YP_004790715.1 KEGG: sml:Smlt0198 electron transfer flavoprotein-ubiquinone oxidoreductase; PFAM: Electron transfer flavoprotein-ubiquinone oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_004790716.1 KEGG: sml:Smlt0199 glutaryl-CoA dehydrogenase; PFAM: Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, central region; Acyl-CoA oxidase/dehydrogenase, type 1 YP_004790717.1 PFAM: tRNA/rRNA methyltransferase, SpoU; KEGG: sml:Smlt0200 tRNA/rRNA methyltransferase YP_004790718.1 KEGG: sml:Smlt0201 hypothetical protein YP_004790719.1 PFAM: Peptidase M16, C-terminal; Peptidase M16, N-terminal; KEGG: smt:Smal_0165 peptidase M16 domain-containing protein YP_004790720.1 KEGG: sml:Smlt0204 hypothetical protein YP_004790721.1 KEGG: smt:Smal_0167 3-oxoacyl-(ACP) synthase III; PFAM: 3-Oxoacyl-[ACP ACP] synthase III C-terminal; 3-Oxoacyl-[ACP ACP] synthase III YP_004790722.1 KEGG: smt:Smal_0168 alpha/beta hydrolase fold domain-containing protein; PFAM: Alpha/beta hydrolase fold-1 YP_004790723.1 PFAM: Uncharacterised protein family UPF0153; KEGG: smt:Smal_0169 hypothetical protein YP_004790724.1 KEGG: smt:Smal_0170 peptide synthase; PFAM: AMP-dependent synthetase/ligase YP_004790725.1 KEGG: smt:Smal_0171 3-beta hydroxysteroid dehydrogenase/isomerase; PFAM: 3-beta hydroxysteroid dehydrogenase/isomerase YP_004790726.1 KEGG: smt:Smal_0172 hypothetical protein; HAMAP: Protein of unknown function DUF1328; PFAM: Protein of unknown function DUF1328 YP_004790727.1 PFAM: D-alanine--D-alanine ligase, C-terminal; D-alanine--D-alanine ligase, N-terminal; TIGRFAM: D-alanine--D-alanine ligase; HAMAP: D-alanine--D-alanine ligase; KEGG: smt:Smal_0173 D-alanyl-alanine synthetase A YP_004790728.1 PFAM: Sterol-binding; KEGG: smt:Smal_0174 sterol-binding domain-containing protein YP_004790729.1 KEGG: smt:Smal_0175 ubiquinone biosynthesis protein UbiB; TIGRFAM: 2-polyprenylphenol 6-hydroxylase; PFAM: ABC-1 YP_004790730.1 KEGG: sml:Smlt0214 hypothetical protein YP_004790731.1 KEGG: sml:Smlt0215 hexapeptide transferase YP_004790732.1 PFAM: Glycosyl transferase, family 2; KEGG: sml:Smlt0216 transmembrane glycosyl transferase YP_004790733.1 PFAM: N-acetylglucosaminyl phosphatidylinositol deacetylase; KEGG: sml:Smlt0217 N-acetyl glucosamine deacetylase YP_004790734.1 PFAM: Methyltransferase type 11; KEGG: smt:Smal_0176 O-methyltransferase family 3 YP_004790735.1 PFAM: Pseudouridine synthase, RsuA and RluB/C/D/E/F; KEGG: sml:Smlt0219 tRNA pseudouridine synthase C YP_004790736.1 PFAM: Protein of unknown function DUF2059; KEGG: sml:Smlt0220 hypothetical protein YP_004790737.1 PFAM: Class I peptide chain release factor; KEGG: sml:Smlt0221 peptidyl-tRNA hydrolase domain-containing protein YP_004790738.1 KEGG: smt:Smal_0180 phospholipid/glycerol acyltransferase; PFAM: Phospholipid/glycerol acyltransferase; SMART: Phospholipid/glycerol acyltransferase YP_004790739.1 KEGG: sml:Smlt0223 peptidyl-dipeptidase DCP; PFAM: Peptidase M3A/M3B, thimet/oligopeptidase F YP_004790740.1 KEGG: smt:Smal_0182 3-dehydroquinate dehydratase YP_004790741.1 KEGG: smt:Smal_0183 hypothetical protein YP_004790742.1 KEGG: smt:Smal_0184 signal peptidase I; TIGRFAM: Peptidase S26A, signal peptidase I; PFAM: Peptidase S24/S26A/S26B, conserved region YP_004790743.1 PFAM: Major facilitator superfamily MFS-1; KEGG: sml:Smlt0227 MFS family transporter YP_004790744.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: smt:Smal_0186 LysR family transcriptional regulator YP_004790745.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: smt:Smal_0187 LysR family transcriptional regulator YP_004790746.1 TIGRFAM: Malate synthase A; KEGG: sml:Smlt0231 malate synthase; PFAM: Malate synthase-like, core YP_004790747.1 TIGRFAM: Isocitrate lyase; KEGG: smt:Smal_0189 isocitrate lyase; PFAM: Isocitrate lyase/phosphorylmutase YP_004790748.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate cyclase, predicted; Cyclic nucleotide-binding; KEGG: smt:Smal_0190 cyclic nucleotide-binding protein; SMART: Diguanylate cyclase, predicted; Cyclic nucleotide-binding YP_004790749.1 PFAM: Tetratricopeptide TPR2; KEGG: xca:xccb100_0262 hypothetical protein YP_004790750.1 KEGG: smt:Smal_0194 hypothetical protein YP_004790751.1 KEGG: xca:xccb100_0264 nitroreductase; TIGRFAM: SagB-type dehydrogenase domain; PFAM: Nitroreductase-like YP_004790752.1 KEGG: sml:Smlt0237 biotin carboxylase; PFAM: Carbamoyl phosphate synthetase, large subunit, ATP-binding; Carbamoyl phosphate synthase, large subunit, N-terminal; Biotin carboxylase, C-terminal; Biotin/lipoyl attachment YP_004790753.1 KEGG: sml:Smlt0238 acyl CoA carboxyltransferase; PFAM: Carboxyl transferase YP_004790754.1 KEGG: sml:Smlt0239 acyl CoA dehydrogenase; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, central region YP_004790755.1 PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: sml:Smlt0240 TetR family transcriptional regulator YP_004790756.1 PFAM: Cytochrome c, class I; KEGG: sml:Smlt0241 transmembrane-anchored cytochrome c YP_004790757.1 PFAM: Endonuclease/exonuclease/phosphatase; KEGG: sml:Smlt0242 hypothetical protein YP_004790759.1 PFAM: Protein of unknown function DUF6, transmembrane; KEGG: smt:Smal_0202 hypothetical protein YP_004790760.1 KEGG: sml:Smlt0245 hypothetical protein YP_004790761.1 PFAM: ATPase, AFG1-like; KEGG: sml:Smlt0246 ATPase YP_004790762.1 KEGG: smt:Smal_0205 hypothetical protein YP_004790763.1 TIGRFAM: Ribonucleoside-diphosphate reductase, alpha subunit; KEGG: sml:Smlt0247 ribonucleoside-diphosphate reductase large subunit; PFAM: Ribonucleotide reductase large subunit, C-terminal; Ribonucleotide reductase large subunit, N-terminal; ATP-cone YP_004790764.1 KEGG: sml:Smlt0248 ribonucleotide diphosphate reductase, small chain; PFAM: Ribonucleotide reductase YP_004790765.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: smt:Smal_0208 lysine exporter protein LysE/YggA YP_004790766.1 PFAM: Thioesterase superfamily; KEGG: sml:Smlt0251 thioesterase YP_004790767.1 KEGG: mno:Mnod_3918 hypothetical protein YP_004790768.1 KEGG: ppg:PputGB1_0525 hypothetical protein YP_004790769.1 KEGG: ecs:ECs1953 methyltransferase; TIGRFAM: DNA methylase, C-5 cytosine-specific; PFAM: DNA methylase, C-5 cytosine-specific YP_004790770.1 KEGG: smt:Smal_0210 NAD-dependent deacetylase; HAMAP: NAD-dependent deacetylase; PFAM: NAD-dependent histone deacetylase, silent information regulator Sir2 YP_004790771.1 KEGG: sml:Smlt0253 NADH/FMN oxidoreductase; PFAM: NADH:flavin oxidoreductase/NADH oxidase, N-terminal YP_004790772.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: sml:Smlt0254 LysR family transcriptional regulator YP_004790773.1 TIGRFAM: Formyltetrahydrofolate deformylase; KEGG: sml:Smlt0255 formyltetrahydrofolate deformylase; PFAM: Formyl transferase, N-terminal; Amino acid-binding ACT YP_004790774.1 KEGG: sml:Smlt0257 pyrazinamidase/nicotinamidase; PFAM: Isochorismatase-like YP_004790775.1 PFAM: Protein of unknown function DUF208; KEGG: smt:Smal_0215 hypothetical protein YP_004790776.1 KEGG: sml:Smlt0260 nicotinate phosphoribosyltransferase; PFAM: Nicotinate phosphoribosyltransferase-like YP_004790777.1 KEGG: sml:Smlt0261 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; TIGRFAM: Cytidyltransferase-related; PFAM: NUDIX hydrolase domain; Cytidylyltransferase YP_004790778.1 PFAM: Patatin; KEGG: sml:Smlt0262 SuhR-like regulator YP_004790779.1 PFAM: Protein of unknown function DUF1028; KEGG: smt:Smal_0217 hypothetical protein YP_004790780.1 KEGG: sml:Smlt0263 HTH transcriptional regulator; PFAM: Protein of unknown function DUF2083,transcriptional regulator; Protein of unknown function DUF955; Helix-turn-helix type 3; SMART: Helix-turn-helix type 3 YP_004790781.1 TIGRFAM: Methylmalonate-semialdehyde dehydrogenase; KEGG: sml:Smlt0264 DntE; PFAM: Aldehyde dehydrogenase YP_004790782.1 KEGG: sml:Smlt0265 acyl CoA dehydrogenase; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, central region YP_004790783.1 PFAM: Crotonase, core; KEGG: sml:Smlt0266 enoyl-CoA hydratase YP_004790784.1 KEGG: smt:Smal_0222 enoyl-CoA hydratase/isomerase; PFAM: Crotonase, core YP_004790785.1 TIGRFAM: 3-hydroxyisobutyrate dehydrogenase; KEGG: sml:Smlt0268 3-hydroxyisobutyrate dehydrogenase; PFAM: 6-phosphogluconate dehydrogenase, NAD-binding YP_004790786.1 PFAM: CMP/dCMP deaminase, zinc-binding; KEGG: adn:Alide_0478 cmp/dcmp deaminase zinc-binding protein YP_004790787.1 KEGG: sml:Smlt0269 organic hydroperoxide resistance protein; TIGRFAM: Peroxiredoxin, organic hydroperoxide resistance-related; PFAM: Peroxiredoxin, OsmC-like protein YP_004790788.1 KEGG: sml:Smlt0270 cation efflux protein; TIGRFAM: Cation efflux protein; PFAM: Cation efflux protein YP_004790789.1 KEGG: axy:AXYL_04023 hypothetical protein YP_004790790.1 TIGRFAM: Conserved hypothetical protein CHP01563; KEGG: aav:Aave_1775 phage head-tail adaptor YP_004790791.1 KEGG: axy:AXYL_04020 hypothetical protein YP_004790792.1 PFAM: Phage tail protein 3; KEGG: phage tail protein YP_004790793.1 PFAM: Protein of unknown function DUF1789; KEGG: axy:AXYL_04018 hypothetical protein YP_004790794.1 PFAM: Protein of unknown function DUF1799, phage-related; KEGG: axy:AXYL_04017 hypothetical protein YP_004790795.1 PFAM: Phage tail tape measure protein, conserved region; KEGG: rah:Rahaq_1817 phage tail tape measure protein, lambda family YP_004790796.1 PFAM: Phage minor tail; KEGG: esa:ESA_01040 hypothetical protein YP_004790797.1 KEGG: xac:XAC2657 hypothetical protein YP_004790798.1 KEGG: rsc:RCFBP_20338 phage tail protein; TIGRFAM: Phage minor tail protein L; PFAM: Phage minor tail protein L YP_004790799.1 KEGG: rso:RSc1695 phage HK022 GP19-like protein; PFAM: NLP/P60; SMART: Mov34/MPN/PAD-1 YP_004790800.1 PFAM: Bacteriophage lambda tail assembly I; KEGG: xca:xccb100_3327 phage tail assembly protein I YP_004790801.1 PFAM: Protein of unknown function DUF1983; Fibronectin, type III; KEGG: bpm:BURPS1710b_1694 hypothetical protein YP_004790804.1 PFAM: Sulphate transporter; Sulphate transporter/antisigma-factor antagonist STAS; KEGG: smt:Smal_0226 sulfate transporter YP_004790805.1 KEGG: xca:xccb100_3987 hypothetical protein YP_004790806.1 PFAM: Peptidoglycan binding-like; KEGG: xca:xccb100_1690 hypothetical protein YP_004790807.1 KEGG: plu:plu0863 hypothetical protein YP_004790808.1 KEGG: smt:Smal_0227 tRNA-dihydrouridine synthase A; TIGRFAM: tRNA-dihydrouridine synthase, TIM-barrel, YjbN; PFAM: tRNA-dihydrouridine synthase YP_004790809.1 KEGG: smt:Smal_0228 hypothetical protein YP_004790810.1 KEGG: smt:Smal_0229 winged helix family two component transcriptional regulator; PFAM: Signal transduction response regulator, receiver region; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver region YP_004790811.1 KEGG: sml:Smlt0278 two component regulator sensor histidine kinase transmembrane transcriptional regulator; PFAM: ATP-binding region, ATPase-like; HAMP linker domain; SMART: ATP-binding region, ATPase-like YP_004790812.1 PFAM: Protein of unknown function DUF980; KEGG: smt:Smal_0231 hypothetical protein YP_004790813.1 KEGG: smt:Smal_0232 hypothetical protein YP_004790814.1 KEGG: smt:Smal_0233 biotin--protein ligase; TIGRFAM: Biotin--acetyl-CoA-carboxylase ligase; PFAM: Biotin/lipoate A/B protein ligase; Helix-turn-helix, type 11; Biotin protein ligase, C-terminal YP_004790815.1 TIGRFAM: Bordetella pertussis Bvg accessory factor; HAMAP: Type III pantothenate kinase; KEGG: sml:Smlt0283 pantothenate kinase; PFAM: Bordetella pertussis Bvg accessory factor YP_004790816.1 PFAM: Sporulation/cell division region, bacteria; KEGG: smt:Smal_0235 sporulation domain-containing protein YP_004790817.1 KEGG: xac:XAC1866 wall associated protein; TIGRFAM: YD repeat; PFAM: YD repeat YP_004790818.1 TIGRFAM: RHS repeat-associated core domain-containing protein; YD repeat; KEGG: xac:XAC1305 wall-associated protein YP_004790819.1 KEGG: sml:Smlt0337 hypothetical protein YP_004790820.1 KEGG: sml:Smlt0339 hypothetical protein YP_004790823.1 manually curated; KEGG: bvi:Bcep1808_4561 hypothetical protein YP_004790824.1 KEGG: smt:Smal_2063 hypothetical protein YP_004790825.1 TIGRFAM: Arginase, subgroup; KEGG: smt:Smal_0238 arginase; PFAM: Ureohydrolase YP_004790826.1 PFAM: Entericidin EcnAB; KEGG: sml:Smlt0342 entericidin A YP_004790827.1 PFAM: CsbD-like; KEGG: sml:Smlt0343 CsbD-like stress-like protein YP_004790828.1 KEGG: smt:Smal_0241 hypothetical protein YP_004790829.1 TIGRFAM: Tryptophanyl-tRNA synthetase, class Ib; KEGG: sml:Smlt0345 tryptophanyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class Ib YP_004790830.1 KEGG: sml:Smlt0346 transmembrane protein YP_004790831.1 KEGG: smt:Smal_0244 beta-lactamase domain-containing protein YP_004790832.1 PFAM: Peptidase M28; KEGG: sml:Smlt0348 peptidase YP_004790833.1 KEGG: smt:Smal_0246 hypothetical protein YP_004790834.1 PFAM: General substrate transporter; KEGG: sml:Smlt0350 MFS family transmembrane transporter protein YP_004790835.1 PFAM: Protein of unknown function DUF6, transmembrane; KEGG: sml:Smlt0357 hypothetical protein YP_004790836.1 KEGG: sml:Smlt0358 drug/metabolite transmembrane transporter protein; TIGRFAM: RarD protein; PFAM: Protein of unknown function DUF6, transmembrane YP_004790837.1 PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: sml:Smlt0359 TonB dependent receptor protein YP_004790838.1 KEGG: sbc:SbBS512_E3877 hypothetical protein YP_004790839.1 PFAM: Protein of unknown function DUF214, permase predicted; KEGG: sml:Smlt0360 ABC transporter transmembrane permease YP_004790840.1 PFAM: Protein of unknown function DUF214, permase predicted; KEGG: sml:Smlt0361 transmembrane permease YP_004790841.1 PFAM: ABC transporter-like; KEGG: sml:Smlt0362 ATP-binding component of ABC transporter; SMART: ATPase, AAA+ type, core YP_004790842.1 KEGG: sml:Smlt0363 HlyD family secretion protein; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD YP_004790843.1 KEGG: smt:Smal_0255 ABC transporter-like protein; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core YP_004790844.1 PFAM: ABC-2 type transporter; KEGG: smt:Smal_0256 ABC-2 type transporter YP_004790845.1 KEGG: smt:Smal_0257 integral membrane sensor signal transduction histidine kinase; PFAM: Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor region; ATP-binding region, ATPase-like; SMART: ATP-binding region, ATPase-like YP_004790846.1 KEGG: smt:Smal_0258 two component LuxR family transcriptional regulator; PFAM: Signal transduction response regulator, receiver region; Transcription regulator LuxR, C-terminal; SMART: Signal transduction response regulator, receiver region; Transcription regulator LuxR, C-terminal YP_004790847.1 KEGG: smt:Smal_0259 cytochrome b561 YP_004790848.1 PFAM: Catalase related subgroup; KEGG: sml:Smlt0372 catalase YP_004790849.1 PFAM: Peptidase M17, leucyl aminopeptidase, C-terminal; Peptidase M17, leucyl aminopeptidase, N-terminal; KEGG: sml:Smlt0373 leucine aminopeptidase YP_004790850.1 KEGG: sml:Smlt0374 haloacid dehalogenase hydrolase; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase-like hydrolase YP_004790851.1 PFAM: Uncharacterised protein family UPF0118; KEGG: sml:Smlt0377 transport protein YP_004790852.1 KEGG: sml:Smlt0378 hypothetical protein YP_004790853.1 KEGG: sml:Smlt0379 transmembrane protein YP_004790854.1 KEGG: sml:Smlt0380 hypothetical protein YP_004790855.1 SMART: PDZ/DHR/GLGF; TIGRFAM: Peptidase S1C, Do; KEGG: smt:Smal_0267 protease Do; PFAM: Peptidase S1/S6, chymotrypsin/Hap; PDZ/DHR/GLGF YP_004790856.1 KEGG: sml:Smlt0383 histone H1-like protein YP_004790857.1 KEGG: sml:Smlt0384 hypothetical protein YP_004790858.1 PFAM: Protein of unknown function DUF1428; KEGG: sml:Smlt0385 hypothetical protein YP_004790859.1 PFAM: Peptidase S9B, dipeptidylpeptidase IV N-terminal; Peptidase S9, prolyl oligopeptidase, catalytic domain; KEGG: sml:Smlt0386 exported dipeptidyl peptidase IV YP_004790860.1 KEGG: sml:Smlt0387 hypothetical protein YP_004790861.1 KEGG: smt:Smal_0272 two component LuxR family transcriptional regulator; PFAM: Signal transduction response regulator, receiver region; Transcription regulator LuxR, C-terminal; SMART: Transcription regulator LuxR, C-terminal; Signal transduction response regulator, receiver region YP_004790862.1 KEGG: smt:Smal_0273 hypothetical protein YP_004790863.1 KEGG: sml:Smlt0391 hypothetical protein; TIGRFAM: Conserved hypothetical protein CHP02001; PFAM: Conserved hypothetical protein CHP02001 YP_004790864.1 PFAM: Major facilitator superfamily MFS-1; KEGG: smt:Smal_0275 major facilitator superfamily protein YP_004790865.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: sml:Smlt0393 LysR family transcriptional regulator YP_004790866.1 PFAM: Protein of unknown function DUF1456; KEGG: smt:Smal_0277 hypothetical protein YP_004790867.1 KEGG: smt:Smal_0278 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR YP_004790868.1 PFAM: Sporulation/cell division region, bacteria; KEGG: smt:Smal_0279 sporulation domain-containing protein YP_004790869.1 TIGRFAM: Arginyl-tRNA synthetase, class Ic; HAMAP: Arginyl-tRNA synthetase, class Ic; KEGG: sml:Smlt0398 arginyl-tRNA synthetase YP_004790870.1 KEGG: smt:Smal_0281 DNA repair protein RadC; TIGRFAM: DNA repair, RadC-like; PFAM: DNA repair, RadC-like YP_004790871.1 KEGG: smt:Smal_0283 two component LuxR family transcriptional regulator; PFAM: Signal transduction response regulator, receiver region; Transcription regulator LuxR, C-terminal; SMART: Signal transduction response regulator, receiver region; Transcription regulator LuxR, C-terminal YP_004790872.1 TIGRFAM: Bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; KEGG: smt:Smal_0284 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; PFAM: DNA/pantothenate metabolism flavoprotein, C-terminal; Flavoprotein YP_004790873.1 PFAM: DeoxyUTP pyrophosphatase domain; TIGRFAM: DeoxyUTP pyrophosphatase domain, subfamily 1,; HAMAP: Deoxyuridine 5'-triphosphate nucleotidohydrolase; KEGG: sml:Smlt0402 deoxyuridine 5'-triphosphate nucleotidohydrolase YP_004790874.1 KEGG: smt:Smal_0286 phosphomannomutase; PFAM: Alpha-D-phosphohexomutase, alpha/beta/alpha domain II; Alpha-D-phosphohexomutase, alpha/beta/alpha domain I; Alpha-D-phosphohexomutase, alpha/beta/alpha domain III; Alpha-D-phosphohexomutase, C-terminal YP_004790875.1 KEGG: smt:Smal_0287 winged helix family two component transcriptional regulator; PFAM: Signal transduction response regulator, receiver region; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver region YP_004790876.1 KEGG: sml:Smlt0405 two-component sensor histidine kinase potassium transport regulator protein; PFAM: Signal transduction histidine kinase, osmosensitive K+ channel sensor, N-terminal; UspA; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; ATP-binding region, ATPase-like; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region YP_004790877.1 PFAM: Potassium transporting ATPase, C subunit; TIGRFAM: Potassium transporting ATPase, C subunit; HAMAP: Potassium transporting ATPase, C subunit; KEGG: smt:Smal_0289 potassium-transporting ATPase, subunit C YP_004790878.1 PFAM: ATPase, P-type, ATPase-associated region; Haloacid dehalogenase-like hydrolase; TIGRFAM: Potassium-transporting ATPase, B chain; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; HAMAP: Potassium-transporting ATPase, B chain; KEGG: smt:Smal_0290 potassium-transporting ATPase subunit B YP_004790879.1 PFAM: ATPase, K+ transporting, A subunit; TIGRFAM: ATPase, K+ transporting, A subunit; HAMAP: ATPase, K+ transporting, A subunit; KEGG: sml:Smlt0408 potassium-transporting ATPase subunit A YP_004790880.1 KEGG: smt:Smal_0292 hypothetical protein YP_004790881.1 KEGG: smt:Smal_0293 hypothetical protein YP_004790882.1 PFAM: Phosphoribosyltransferase; TIGRFAM: Orotate phosphoribosyl transferase; HAMAP: Orotate phosphoribosyltransferase; KEGG: sml:Smlt0411 orotate phosphoribosyltransferase YP_004790883.1 TIGRFAM: Exodeoxyribonuclease III xth; AP endonuclease, family 1; KEGG: smt:Smal_0295 exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase YP_004790884.1 PFAM: Major facilitator superfamily MFS-1; KEGG: xcv:XCV4014 peptide-acetyl-coenzyme A transporter family protein YP_004790885.1 KEGG: sml:Smlt0414 hypothetical protein YP_004790886.1 KEGG: sml:Smlt0415 anhydro-N-acetylmuramic acid kinase; HAMAP: Anhydro-N-acetylmuramic acid kinase; PFAM: Anhydro-N-acetylmuramic acid kinase YP_004790887.1 PFAM: Peptidase M23; Opacity-associated protein A; KEGG: sml:Smlt0416 hypothetical protein YP_004790888.1 TIGRFAM: Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial; HAMAP: Tyrosyl-tRNA synthetase; KEGG: smt:Smal_0300 tyrosyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class Ib; RNA-binding S4 YP_004790889.1 PFAM: Peptidase M28; KEGG: smt:Smal_0301 peptidase M28 YP_004790890.1 KEGG: sml:Smlt0419 hypothetical protein YP_004790891.1 PFAM: Peptidase M23; KEGG: smt:Smal_0303 peptidase M23 YP_004790892.1 TIGRFAM: Peptidase S41A, C-terminal protease; PFAM: Peptidase S41; PDZ/DHR/GLGF; KEGG: smt:Smal_0304 carboxyl-terminal protease; SMART: Peptidase S41; PDZ/DHR/GLGF YP_004790893.1 PFAM: Peptidase S54, rhomboid; KEGG: sml:Smlt0422 rhomboid family transmembrane protein YP_004790894.1 PFAM: Membrane protein, aromatic hydrocarbon degradation; KEGG: sml:Smlt0423 fatty acid transport system, membrane protein YP_004790895.1 KEGG: sml:Smlt0424 transmembrane protein; TIGRFAM: Nicotinamide mononucleotide transporter PnuC; PFAM: Nicotinamide mononucleotide transporter PnuC YP_004790896.1 KEGG: sml:Smlt0425 transcriptional regulator NadR YP_004790897.1 KEGG: sml:Smlt0426 bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; TIGRFAM: Delta-1-pyrroline-5-carboxylate dehydrogenase 3; PFAM: Proline dehydrogenase; Aldehyde dehydrogenase YP_004790898.1 PFAM: Protein of unknown function DUF2244, transmembrane; KEGG: sml:Smlt0427 transmembrane protein YP_004790899.1 KEGG: sml:Smlt0428 cytochrome c oxidase subunit II; TIGRFAM: Cytochrome c oxidase, subunit II; PFAM: Cytochrome c oxidase subunit II C-terminal; Cytochrome C oxidase subunit II, transmembrane region YP_004790900.1 KEGG: sml:Smlt0429 cytochrome c oxidase polypeptide I; TIGRFAM: Cytochrome c oxidase, subunit I bacterial type; PFAM: Cytochrome c oxidase, subunit I YP_004790901.1 KEGG: sml:Smlt0430 transmembrane protein YP_004790902.1 PFAM: Cytochrome c oxidase assembly protein CtaG/Cox11; KEGG: sml:Smlt0431 cytochrome c oxidase assembly protein YP_004790903.1 PFAM: Cytochrome c oxidase, subunit III; KEGG: smt:Smal_0314 cytochrome c oxidase subunit III YP_004790904.1 KEGG: smt:Smal_0315 hypothetical protein YP_004790905.1 KEGG: smt:Smal_0316 hypothetical protein YP_004790906.1 KEGG: sml:Smlt0435 hypothetical protein YP_004790907.1 PFAM: Cytochrome oxidase assembly; KEGG: smt:Smal_0318 cytochrome oxidase assembly YP_004790908.1 TIGRFAM: Protohaem IX farnesyltransferase; HAMAP: Protohaem IX farnesyltransferase; KEGG: sml:Smlt0436A protoheme IX farnesyltransferase; PFAM: UbiA prenyltransferase YP_004790909.1 KEGG: sml:Smlt0438 hypothetical protein YP_004790910.1 PFAM: Bile acid:sodium symporter; KEGG: sml:Smlt0439 symporter family protein YP_004790911.1 PFAM: Beta-lactamase hydrolase-like; KEGG: smt:Smal_0322 hypothetical protein YP_004790912.1 TIGRFAM: DNA primase, DnaG; PFAM: DNA primase, catalytic core, N-terminal; Zinc finger, CHC2-type; Toprim domain; DNA primase, DnaB-helicase binding domain; DNA primase DnaG, DnaB-binding; KEGG: smt:Smal_0323 DNA primase; SMART: DNA primase DnaG, DnaB-binding; Zinc finger, CHC2-type; Toprim domain, subgroup YP_004790913.1 KEGG: smt:Smal_0324 ribonuclease BN; TIGRFAM: Ribonuclease BN; PFAM: Ribonuclease BN-related YP_004790914.1 KEGG: sml:Smlt0443 hypothetical protein YP_004790915.1 TIGRFAM: Ribosomal protein S21; HAMAP: Ribosomal protein S21; KEGG: smt:Smal_0326 30S ribosomal protein S21; PFAM: Ribosomal protein S21 YP_004790916.1 KEGG: smt:Smal_0327 DNA-binding/iron metalloprotein/AP endonuclease; manually curated; TIGRFAM: glycoprotease GCP; Peptidase M22, glycoprotease, subgroup; PFAM: Peptidase M22, glycoprotease; HAMAP: O-sialoglycoprotein endopeptidase YP_004790917.1 KEGG: smt:Smal_0328 hypothetical protein YP_004790918.1 KEGG: sml:Smlt0447 dihydroneopterin aldolase; TIGRFAM: Dihydroneopterin aldolase; Dihydroneopterin aldolase subgroup; PFAM: Dihydroneopterin aldolase YP_004790919.1 PFAM: Mechanosensitive ion channel MscS; KEGG: smt:Smal_0330 mechanosensitive ion channel MscS YP_004790920.1 KEGG: smt:Smal_0331 glycoside hydrolase family 3 domain-containing protein; PFAM: Glycoside hydrolase, family 3, N-terminal; Glycoside hydrolase, family 3, C-terminal YP_004790921.1 KEGG: smt:Smal_0332 hypothetical protein YP_004790922.1 KEGG: sml:Smlt0451 dehydrogenase YP_004790923.1 PFAM: YiaAB two helix; KEGG: sml:Smlt0452 transmembrane protein YP_004790924.1 PFAM: Transposase, IS116/IS110/IS902; Transposase, IS111A/IS1328/IS1533; KEGG: ppu:PP_5290 ISPpu10, transposase YP_004790925.1 KEGG: sml:Smlt0453 hypothetical protein YP_004790926.1 PFAM: Amino acid permease-associated region; KEGG: sml:Smlt0454 transmembrane amino acid permease YP_004790927.1 PFAM: YkuD domain; KEGG: sml:Smlt0455 hypothetical protein YP_004790928.1 PFAM: Helix-turn-helix protein RpiR; Sugar isomerase (SIS); KEGG: smt:Smal_0338 RpiR family transcriptional regulator YP_004790929.1 KEGG: sml:Smlt0458 chloromuconate cycloisomerase; PFAM: Mandelate racemase/muconate lactonizing enzyme, C-terminal; Mandelate racemase/muconate lactonizing enzyme, N-terminal YP_004790930.1 PFAM: NLP/P60; KEGG: smt:Smal_0340 NLP/P60 protein YP_004790931.1 KEGG: sml:Smlt0460 transglutaminase; PFAM: Transglutaminase-like; SMART: Transglutaminase-like YP_004790932.1 PFAM: TonB-dependent receptor, plug; KEGG: psu:Psesu_2552 TonB-dependent receptor plug YP_004790933.1 PFAM: Beta-lactamase-related; KEGG: smt:Smal_0343 beta-lactamase YP_004790934.1 KEGG: smt:Smal_0344 peptidase M15D VanX D-ala-D-ala dipeptidase; PFAM: Peptidase M15D, vanX D-ala-D-ala dipeptidase YP_004790935.1 KEGG: sml:Smlt0466 transmembrane protein YP_004790936.1 PFAM: EF-Hand domain; KEGG: smt:Smal_0346 calcium-binding EF-hand-containing protein YP_004790937.1 PFAM: DinB; KEGG: ent:Ent638_1904 DinB family protein YP_004790938.1 PFAM: Haloacid dehalogenase-like hydrolase; KEGG: sml:Smlt0468 halogenase-like hydrolase YP_004790939.1 KEGG: smt:Smal_0348 hypothetical protein YP_004790940.1 PFAM: Protein of unknown function DUF1338; KEGG: smt:Smal_0349 hypothetical protein YP_004790941.1 TIGRFAM: Succinate CoA transferase; KEGG: smt:Smal_0350 succinate CoA transferase; PFAM: Acetyl-CoA hydrolase/transferase YP_004790942.1 HAMAP: Glutamate-ammonia-ligase adenylyltransferase; KEGG: smt:Smal_0351 (glutamate--ammonia-ligase) adenylyltransferase; PFAM: Glutamate-ammonia ligase adenylyltransferase; PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase YP_004790943.1 KEGG: smt:Smal_0352 hypothetical protein; TIGRFAM: Protein of unknown function DUF165; PFAM: Protein of unknown function DUF165 YP_004790944.1 KEGG: sml:Smlt0477 transmembrane protein YP_004790945.1 KEGG: smt:Smal_0354 hypothetical protein YP_004790946.1 PFAM: Uncharacterised conserved protein UCP028477; KEGG: sml:Smlt0479 exported outer membrane protein YP_004790947.1 KEGG: sml:Smlt0480 hypothetical protein YP_004790948.1 PFAM: Protein of unknown function DUF1022; KEGG: sml:Smlt0481 hypothetical protein YP_004790949.1 KEGG: sml:Smlt0482 hypothetical protein; HAMAP: NADH dehydrogenase/NAD(P)H nitroreductase rutE; PFAM: Nitroreductase-like YP_004790950.1 PFAM: Lipid/polyisoprenoid-binding, YceI-like; KEGG: sml:Smlt0483 hypothetical protein YP_004790951.1 KEGG: smt:Smal_0360 hypothetical protein YP_004790952.1 KEGG: smt:Smal_0362 hypothetical protein YP_004790953.1 PFAM: FAD-binding 9, siderophore-interacting; Siderophore-interacting protein; KEGG: sml:Smlt0487 siderophore-interacting protein YP_004790954.1 PFAM: Transcriptional regulator PadR N-terminal-like; KEGG: sml:Smlt0488 PadR family transcriptional regulator YP_004790955.1 TIGRFAM: 2-oxo-acid dehydrogenase E1 component homodimeric type; KEGG: sml:Smlt0490 pyruvate dehydrogenase subunit E1; PFAM: Transketolase, N-terminal YP_004790956.1 KEGG: aav:Aave_2264 hypothetical protein YP_004790957.1 manually curated; KEGG: ajs:Ajs_4079 hypothetical protein YP_004790958.1 KEGG: smt:Smal_0367 hypothetical protein YP_004790959.1 KEGG: sml:Smlt0499 hypothetical protein YP_004790961.1 KEGG: xcb:XC_2286 hypothetical protein YP_004790962.1 KEGG: xca:xccb100_2197 hypothetical protein YP_004790963.1 KEGG: smt:Smal_0380 hypothetical protein YP_004790964.1 KEGG: sml:Smlt0503 hypothetical protein YP_004790965.1 KEGG: smt:Smal_0382 hypothetical protein YP_004790966.1 KEGG: smt:Smal_0384 hypothetical protein YP_004790967.1 KEGG: smt:Smal_0385 hypothetical protein YP_004790968.1 KEGG: smt:Smal_0386 hypothetical protein YP_004790969.1 KEGG: sml:Smlt0507 arylesterase; PFAM: Alpha/beta hydrolase fold-1 YP_004790970.1 KEGG: sml:Smlt0508 hypothetical protein YP_004790971.1 KEGG: smt:Smal_2113 hypothetical protein YP_004790972.1 KEGG: smt:Smal_0390 hypothetical protein YP_004790973.1 PFAM: Polysaccharide deacetylase; KEGG: sml:Smlt0512 polysaccharide deacetylase YP_004790974.1 KEGG: sml:Smlt0513 hypothetical protein YP_004790975.1 KEGG: sml:Smlt0514 hypothetical protein YP_004790976.1 KEGG: smt:Smal_0394 hypothetical protein YP_004790977.1 KEGG: sml:Smlt0516 transmembrane protein YP_004790978.1 KEGG: smt:Smal_0396 cation diffusion facilitator family transporter; TIGRFAM: Cation efflux protein; PFAM: Cation efflux protein YP_004790979.1 PFAM: Protein of unknown function DUF156; KEGG: smt:Smal_0397 hypothetical protein YP_004790980.1 KEGG: sml:Smlt0519 transmembrane protein YP_004790981.1 PFAM: Cobalamin (vitamin B12) biosynthesis CobW-like; Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal; KEGG: smt:Smal_0399 cobalamin synthesis protein P47K YP_004790982.1 KEGG: sml:Smlt0521 ABC transport system ATP-binding protein; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core YP_004790983.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: sml:Smlt0522 LysR family transcriptional regulator YP_004790984.1 PFAM: Beta-lactamase-related; KEGG: sml:Smlt0523 esterase YP_004790985.1 PFAM: Major facilitator superfamily MFS-1; KEGG: sml:Smlt0524 MFS family transporter protein YP_004790986.1 KEGG: sml:Smlt0525 transmembrane EAL domain-containing protein; PFAM: Diguanylate phosphodiesterase, predicted; SMART: Diguanylate phosphodiesterase, predicted YP_004790987.1 PFAM: Amino acid permease-associated region; KEGG: sml:Smlt0526 D-alanine/D-serine/glycine permease YP_004790988.1 PFAM: Lytic transglycosylase-like, catalytic; KEGG: smt:Smal_0406 lytic transglycosylase catalytic YP_004790989.1 KEGG: smt:Smal_0407 hypothetical protein YP_004790990.1 PFAM: NHL repeat; Peptidase M23; KEGG: sml:Smlt0528 NHL repeat-containing protein YP_004790991.1 PFAM: YCII-related; KEGG: smt:Smal_0409 DGPFAETKE family protein YP_004790992.1 PFAM: YCII-related; KEGG: smt:Smal_0410 DGPFAETKE family protein YP_004790993.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sml:Smlt0532 hypothetical protein YP_004790994.1 KEGG: sml:Smlt0533 hypothetical protein YP_004790995.1 PFAM: Protein of unknown function DUF1428; KEGG: sml:Smlt0534 hypothetical protein YP_004790996.1 KEGG: smt:Smal_0414 ECF subfamily RNA polymerase sigma-24 subunit; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2 YP_004790997.1 KEGG: smt:Smal_0415 hypothetical protein YP_004790998.1 KEGG: smt:Smal_0416 hypothetical protein YP_004790999.1 KEGG: sml:Smlt0539 hypothetical protein YP_004791000.1 KEGG: smt:Smal_0418 hypothetical protein YP_004791001.1 PFAM: Peptidase M28; KEGG: smt:Smal_0419 peptidase M28 YP_004791002.1 KEGG: smt:Smal_0420 signal transduction histidine kinase LytS; PFAM: Signal transduction histidine kinase, internal region; ATP-binding region, ATPase-like; SMART: ATP-binding region, ATPase-like YP_004791003.1 KEGG: smt:Smal_0421 LytTR family two component transcriptional regulator; PFAM: Signal transduction response regulator, receiver region; LytTr DNA-binding region; SMART: Signal transduction response regulator, receiver region YP_004791004.1 KEGG: sml:Smlt0544 hypothetical protein YP_004791005.1 KEGG: smt:Smal_0423 hypothetical protein YP_004791006.1 PFAM: Protein of unknown function DUF2236; KEGG: sml:Smlt0546 hypothetical protein YP_004791007.1 KEGG: sml:Smlt0550 zinc metallopeptidase; PFAM: Peptidase M13; Peptidase M13, neprilysin, C-terminal YP_004791008.1 TIGRFAM: PAS; Diguanylate cyclase, predicted; PFAM: Diguanylate phosphodiesterase, predicted; PAS fold-3; PAS fold-4; Diguanylate cyclase, predicted; KEGG: sml:Smlt0551 transmembrane GGDEF EAL domain signalling protein; SMART: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; PAS; PAC motif YP_004791009.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: sml:Smlt0552 LysR family transcriptional regulator YP_004791010.1 PFAM: DoxX; KEGG: sml:Smlt0553 transmembrane protein YP_004791011.1 PFAM: Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B; KEGG: smt:Smal_0432 extradiol ring-cleavage dioxygenase class III protein subunit B YP_004791012.1 KEGG: sml:Smlt0555 transmembrane Na+/H+ antiport transporter; TIGRFAM: Na+/H+ exchanger, yjcE-like, bacteria; PFAM: Cation/H+ exchanger YP_004791013.1 KEGG: smt:Smal_0434 hypothetical protein YP_004791014.1 KEGG: sml:Smlt0557 hypothetical protein YP_004791015.1 KEGG: sml:Smlt0559 hypothetical protein YP_004791016.1 KEGG: sml:Smlt0560 hypothetical protein YP_004791017.1 PFAM: Outer membrane protein, OmpA/MotB, C-terminal; KEGG: sml:Smlt0561 flagellar motor protein MotB YP_004791018.1 TIGRFAM: flagellar motor stator protein MotA; KEGG: sml:Smlt0562 flagellar motor protein MotA YP_004791019.1 PFAM: Methionine sulphoxide reductase B; TIGRFAM: Methionine sulphoxide reductase B; HAMAP: Peptide methionine sulfoxide reductase msrB; KEGG: pop:POPTR_587179 methionine sulfoxide reductase type YP_004791020.1 KEGG: sml:Smlt0564 hypothetical protein YP_004791021.1 KEGG: smt:Smal_0442 hypothetical protein YP_004791022.1 KEGG: smt:Smal_0443 AsnC family transcriptional regulator; PFAM: Transcription regulator, AsnC-type, C-terminal; SMART: Transcription regulator, AsnC-type YP_004791023.1 HAMAP: D-amino acid dehydrogenase small subunit; KEGG: sml:Smlt0567 D-amino acid dehydrogenase small subunit; PFAM: FAD dependent oxidoreductase YP_004791024.1 PFAM: Alanine racemase, N-terminal; Alanine racemase, C-terminal; TIGRFAM: Alanine racemase; HAMAP: Alanine racemase; KEGG: sml:Smlt0568 alanine racemase YP_004791025.1 KEGG: smt:Smal_0446 hypothetical protein YP_004791026.1 SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; PAC motif; PAS; Signal transduction response regulator, receiver region; manually curated; KEGG: smt:Smal_0447 PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; PAS fold-3; PAS fold-4; Signal transduction response regulator, receiver region YP_004791027.1 KEGG: sml:Smlt0571 hypothetical protein YP_004791028.1 KEGG: smt:Smal_0449 hypothetical protein YP_004791029.1 PFAM: Methyltransferase small; KEGG: sml:Smlt0573 ribosomal RNA small subunit methyltransferase C YP_004791030.1 KEGG: sml:Smlt0574 ribosomal small subunit pseudouridine synthase A; TIGRFAM: Pseudouridine synthase, RsuA and RluB/E/F; PFAM: Pseudouridine synthase, RsuA and RluB/C/D/E/F YP_004791031.1 KEGG: sml:Smlt0575 halacid dehalogenase hydrolase; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase-like hydrolase YP_004791032.1 KEGG: smt:Smal_0453 beta-ketoacyl synthase; PFAM: Beta-ketoacyl synthase, N-terminal; Beta-ketoacyl synthase, C-terminal YP_004791033.1 PFAM: Beta-hydroxyacyl-ACP dehydratase, FabA/FabZ; TIGRFAM: Beta-hydroxyacyl-ACP dehydratase FabA; HAMAP: 3-hydroxydecanoyl-[ACP] dehydratase; KEGG: sml:Smlt0577 3-hydroxydecanoyl-(ACP) dehydratase YP_004791034.1 HAMAP: DNA polymerase IV; KEGG: smt:Smal_0455 DNA polymerase IV; PFAM: DNA-repair protein, UmuC-like YP_004791035.1 KEGG: sml:Smlt0580 metallo beta-lactamase family protein YP_004791036.1 KEGG: smt:Smal_0457 NAD-dependent epimerase/dehydratase YP_004791037.1 KEGG: sml:Smlt0582 LysR family transcriptional regulator; manually curated; PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR YP_004791038.1 PFAM: Methyltransferase type 11; KEGG: smt:Smal_0459 type 11 methyltransferase YP_004791039.1 TIGRFAM: 2-phosphoglycolate phosphatase, prokaryotic; HAD-superfamily hydrolase, subfamily IA, variant 1; HAD-superfamily hydrolase, subfamily IA, variant 3; KEGG: smt:Smal_0460 phosphoglycolate phosphatase; PFAM: Haloacid dehalogenase-like hydrolase YP_004791040.1 KEGG: sml:Smlt0585 vitamin B12 receptor protein; TIGRFAM: TonB-dependent vitamin B12 receptor; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug YP_004791041.1 PFAM: Phosphoglycerate mutase; KEGG: smt:Smal_0462 phosphoglycerate mutase YP_004791042.1 PFAM: TfoX, C-terminal; KEGG: smt:Smal_0463 TfoX domain-containing protein YP_004791043.1 KEGG: smt:Smal_0464 GAF sensor protein; PFAM: GAF; SMART: GAF YP_004791044.1 KEGG: sml:Smlt0589 dithiobiotin synthetase; TIGRFAM: Dethiobiotin synthase; HAMAP: Dethiobiotin synthase YP_004791045.1 KEGG: sml:Smlt0590 GntR family transcriptional regulator; PFAM: HTH transcriptional regulator, GntR; Aminotransferase, class I/II; SMART: HTH transcriptional regulator, GntR YP_004791046.1 PFAM: Peptide methionine sulphoxide reductase MsrA; TIGRFAM: Peptide methionine sulphoxide reductase MsrA; HAMAP: Peptide methionine sulphoxide reductase MsrA; KEGG: sml:Smlt0591 peptide methionine sulfoxide reductase YP_004791047.1 PFAM: Cytochrome c assembly protein, transmembrane region; Redoxin; KEGG: smt:Smal_0468 cytochrome c biogenesis protein transmembrane region YP_004791048.1 TIGRFAM: Methionine sulphoxide reductase B; Twin-arginine translocation pathway, signal sequence; KEGG: smt:Smal_0469 methionine-R-sulfoxide reductase; PFAM: Methionine sulphoxide reductase B YP_004791049.1 KEGG: smt:Smal_0470 winged helix family two component transcriptional regulator; PFAM: Signal transduction response regulator, receiver region; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver region YP_004791050.1 KEGG: sml:Smlt0595 sensor histidine kinase two-component transcriptional regulator; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; HAMP linker domain; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region YP_004791051.1 KEGG: smt:Smal_0472 integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase-like; HAMP linker domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SMART: ATP-binding region, ATPase-like; HAMP linker domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region YP_004791052.1 KEGG: smt:Smal_0473 winged helix family two component transcriptional regulator; PFAM: Signal transduction response regulator, C-terminal; Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region YP_004791053.1 KEGG: smt:Smal_0474 asparagine synthase; PFAM: Asparagine synthase; Glutamine amidotransferase, class-II YP_004791054.1 KEGG: smt:Smal_0475 hypothetical protein YP_004791055.1 KEGG: smt:Smal_0476 queuosine biosynthesis protein QueD; TIGRFAM: queuosine biosynthesis protein QueD; PFAM: 6-pyruvoyl tetrahydropterin synthase-related YP_004791056.1 PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: sml:Smlt0602 TonB dependent receptor protein YP_004791057.1 KEGG: sml:Smlt0603 peptidase M14, carboxypeptidase A; PFAM: Peptidase M14, carboxypeptidase A; SMART: Peptidase M14, carboxypeptidase A YP_004791058.1 KEGG: sml:Smlt0605 ATP-dependent RNA helicase 1; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; DNA/RNA helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal YP_004791059.1 PFAM: Fumarylacetoacetase, C-terminal-like; KEGG: smt:Smal_0481 fumarylacetoacetate (FAA) hydrolase YP_004791060.1 TIGRFAM: Maleylacetoacetate isomerase; KEGG: sml:Smlt0609 maleylacetoacetate isomerase; PFAM: Glutathione S-transferase, N-terminal; Glutathione S-transferase, C-terminal YP_004791061.1 KEGG: sml:Smlt0610 uracil DNA glycosylase; TIGRFAM: Phage SPO1 DNA polymerase-related protein; PFAM: Uracil-DNA glycosylase-like YP_004791062.1 KEGG: sml:Smlt0611 radical SAM methylase protein; PFAM: Radical SAM; SMART: Elongator protein 3/MiaB/NifB YP_004791063.1 KEGG: sml:Smlt0612 twitching motility protein PilU protein; TIGRFAM: Pilus retraction protein PilT; PFAM: Type II secretion system protein E YP_004791064.1 KEGG: smt:Smal_0484 outer membran protein YP_004791065.1 PFAM: Outer membrane protein, OmpA/MotB, C-terminal; KEGG: smt:Smal_0485 OmpA/MotB domain-containing protein YP_004791066.1 KEGG: smt:Smal_0486 hypothetical protein YP_004791067.1 PFAM: Protein of unknown function DUF465; KEGG: sml:Smlt0615 hypothetical protein YP_004791068.1 PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit; Cystathionine beta-synthase, core; KEGG: smt:Smal_0488 pyridoxal-5'-phosphate-dependent protein subunit beta; SMART: Cystathionine beta-synthase, core YP_004791069.1 KEGG: sml:Smlt0617 cystathionine beta/gamma-lyase; PFAM: Cys/Met metabolism, pyridoxal phosphate-dependent enzyme YP_004791070.1 PFAM: ABC-2 type transporter; KEGG: avn:Avin_15960 ABC-2 transporter, permease component YP_004791071.1 PFAM: Bacterial transferase hexapeptide repeat; KEGG: bvi:Bcep1808_0814 hexapaptide repeat-containing transferase YP_004791072.1 PFAM: Glycosyl transferase, group 1; KEGG: bvi:Bcep1808_0813 glycosyl transferase, group 1 YP_004791073.1 PFAM: ABC transporter-like; KEGG: bvi:Bcep1808_0812 ABC transporter related; SMART: ATPase, AAA+ type, core YP_004791074.1 KEGG: bvi:Bcep1808_0811 polysaccharide pyruvyl transferase; TIGRFAM: Polysaccharide pyruvyl transferase, CsaB; PFAM: Polysaccharide pyruvyl transferase; Glycosyl transferase, family 2 YP_004791075.1 PFAM: Glycosyl transferase, group 1; KEGG: reu:Reut_A0718 glycosyl transferase family protein YP_004791076.1 KEGG: cph:Cpha266_0348 hypothetical protein YP_004791077.1 KEGG: azl:AZL_f01160 NAD-dependent epimerase/dehydratase; manually curated; PFAM: NAD-dependent epimerase/dehydratase YP_004791078.1 PFAM: Protein of unknown function DUF6, transmembrane; KEGG: mlo:mll1264 hypothetical protein YP_004791079.1 PFAM: UbiA prenyltransferase; KEGG: sml:Smlt0634 hypothetical protein YP_004791080.1 KEGG: psu:Psesu_0583 phosphatidylglycerol--membrane-oligosaccharide glycerophosphotransferase; PFAM: Sulfatase YP_004791081.1 PFAM: Electron transfer flavoprotein, alpha subunit, C-terminal; Electron transfer flavoprotein, alpha/beta-subunit, N-terminal; KEGG: sml:Smlt0645 electron transfer flavoprotein subunit alpha YP_004791082.1 PFAM: Electron transfer flavoprotein, alpha/beta-subunit, N-terminal; KEGG: smt:Smal_0502 electron transfer flavoprotein subunit alpha/beta YP_004791083.1 KEGG: cby:CLM_2605 hypothetical protein YP_004791084.1 TIGRFAM: dTDP-glucose 4,6-dehydratase; KEGG: sml:Smlt0647 dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase YP_004791085.1 TIGRFAM: Glucose-1-phosphate thymidylyltransferase, long form; KEGG: sml:Smlt0648 glucose-1-phosphate thymidylyltransferase; PFAM: Nucleotidyl transferase YP_004791086.1 TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase related; KEGG: sml:Smlt0649 dTDP-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 3,5-epimerase related YP_004791087.1 TIGRFAM: dTDP-4-dehydrorhamnose reductase; KEGG: sml:Smlt0650 dTDP-4-dehydrorhamnose reductase; PFAM: dTDP-4-dehydrorhamnose reductase YP_004791088.1 TIGRFAM: Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; KEGG: smt:Smal_0508 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; PFAM: Mannose-6-phosphate isomerase, type II, C-terminal; Nucleotidyl transferase YP_004791089.1 PFAM: Alpha-D-phosphohexomutase, alpha/beta/alpha domain II; Alpha-D-phosphohexomutase, alpha/beta/alpha domain I; Alpha-D-phosphohexomutase, alpha/beta/alpha domain III; Alpha-D-phosphohexomutase, C-terminal; KEGG: sml:Smlt0653 phosphohexose mutase YP_004791090.1 TIGRFAM: 3-oxoacid CoA-transferase, subunit A; KEGG: smt:Smal_0517 3-oxoacid CoA-transferase subunit A; PFAM: Coenzyme A transferase YP_004791091.1 TIGRFAM: 3-oxoacid CoA-transferase, subunit B; KEGG: smt:Smal_0518 3-oxoacid CoA-transferase subunit B; PFAM: Coenzyme A transferase YP_004791092.1 KEGG: smt:Smal_0519 hypothetical protein YP_004791093.1 PFAM: Oxoglutarate/iron-dependent oxygenase; KEGG: smt:Smal_0520 2OG-Fe(II) oxygenase YP_004791094.1 PFAM: Protein of unknown function DUF330; KEGG: smt:Smal_0521 hypothetical protein YP_004791095.1 PFAM: Mammalian cell entry related; KEGG: sml:Smlt0660 hypothetical protein YP_004791096.1 PFAM: ABC transporter-like; KEGG: smt:Smal_0523 ABC transporter-like protein; SMART: ATPase, AAA+ type, core YP_004791097.1 KEGG: sml:Smlt0662 ABC transporter permease; TIGRFAM: Protein of unknown function DUF140; PFAM: Protein of unknown function DUF140 YP_004791098.1 PFAM: Protein of unknown function DUF1212; KEGG: sml:Smlt0663 transmembrane protein YP_004791099.1 KEGG: smt:Smal_0526 histone family protein nucleoid-structuring protein H-NS; PFAM: Histone-like nucleoid-structuring protein H-NS; SMART: Histone-like nucleoid-structuring protein H-NS YP_004791100.1 TIGRFAM: Prolyl-tRNA synthetase, class IIa, bacterial; HAMAP: Prolyl-tRNA synthetase; KEGG: sml:Smlt0665 prolyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved region; YbaK/aminoacyl-tRNA synthetase associated region; Anticodon-binding YP_004791101.1 KEGG: sml:Smlt0668 transmembrane anchor protein YP_004791102.1 KEGG: sml:Smlt0669 transmembrane CDP-diacylglycerol--serine O-phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol--serine O-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase YP_004791103.1 KEGG: smt:Smal_0530 hypothetical protein YP_004791104.1 KEGG: sml:Smlt0671 ribosomal-protein-alanine acetyltransferase; TIGRFAM: Ribosomal-protein-alanine acetyltransferase; PFAM: GCN5-related N-acetyltransferase YP_004791105.1 PFAM: Protein of unknown function DUF6, transmembrane; KEGG: sml:Smlt0672 transmembrane protein YP_004791106.1 TIGRFAM: Valyl-tRNA synthetase, class Ia; HAMAP: Valyl-tRNA synthetase; KEGG: smt:Smal_0533 valyl-tRNA synthetase YP_004791107.1 KEGG: smt:Smal_0534 hypothetical protein YP_004791108.1 PFAM: DNA polymerase III chi subunit, HolC; KEGG: smt:Smal_0535 DNA polymerase III subunit chi YP_004791109.1 HAMAP: cytosol aminopeptidase; KEGG: sml:Smlt0675 leucyl aminopeptidase; PFAM: Peptidase M17, leucyl aminopeptidase, C-terminal; Peptidase M17, leucyl aminopeptidase, N-terminal YP_004791110.1 PFAM: Permease YjgP/YjgQ, predicted; KEGG: sml:Smlt0676 transmembrane permease YP_004791111.1 PFAM: Permease YjgP/YjgQ, predicted; KEGG: sml:Smlt0677 transmembrane permease YP_004791112.1 KEGG: sml:Smlt0679 transmembrane RDD family protein; manually curated; PFAM: RDD YP_004791113.1 TIGRFAM: Tyrosine recombinase XerD; HAMAP: Tyrosine recombinase xerD; KEGG: sml:Smlt0680 site-specific tyrosine recombinase XerD; PFAM: Integrase, catalytic core, phage; Integrase, N-terminal SAM-like, phage YP_004791114.1 PFAM: Disulphide bond isomerase, DsbC/G, N-terminal; KEGG: smt:Smal_0541 protein disulfide isomerase precursor YP_004791115.1 PFAM: Glycoside hydrolase, family 18, catalytic domain; Fibronectin, type III; Carbohydrate-binding domain, family 5/12; PKD; KEGG: sml:Smlt0682 chitinase A; SMART: Chitinase II; Fibronectin, type III; Carbohydrate-binding domain, family 5/12 YP_004791116.1 PFAM: AIR synthase related protein, C-terminal; AIR synthase related protein; TIGRFAM: Phosphoribosylformylglycinamidine synthase, eukaryote/proteobacteria; HAMAP: Phosphoribosylformylglycinamidine synthase; KEGG: sml:Smlt0684 phosphoribosylformylglycinamidine synthase YP_004791117.1 PFAM: YadA-like, C-terminal; Haemagluttinin motif; Hep/Hag; KEGG: sml:Smlt0685 repetitive surface protein YP_004791118.1 PFAM: Peptidase S8/S53, subtilisin/kexin/sedolisin; Peptidase, C-terminal, archaeal/bacterial; KEGG: smt:Smal_0545 peptidase S8/S53 subtilisin kexin sedolisin YP_004791119.1 TIGRFAM: Type II secretion system gspE; PFAM: Type II secretion system protein E; General secretory system II, protein E, N-terminal; KEGG: sml:Smlt0687 general secretion pathway protein E; SMART: ATPase, AAA+ type, core YP_004791120.1 PFAM: Type II secretion system F domain; KEGG: sml:Smlt0688 general secretion pathway protein F YP_004791121.1 KEGG: smt:Smal_0548 general secretion pathway protein G; TIGRFAM: General secretion pathway protein G; Prepilin-type cleavage/methylation, N-terminal; PFAM: Type II secretion system protein G YP_004791122.1 TIGRFAM: General secretion pathway protein H; Prepilin-type cleavage/methylation, N-terminal; KEGG: smt:Smal_0549 general secretion pathway protein H YP_004791123.1 KEGG: smt:Smal_0550 type II secretory pathway pseudopilin YP_004791124.1 KEGG: sml:Smlt0692 general secretion pathway protein J YP_004791125.1 KEGG: sml:Smlt0693 general secretion pathway protein K YP_004791126.1 PFAM: Fimbrial assembly; KEGG: sml:Smlt0694 general secretion pathway protein L YP_004791127.1 PFAM: General secretion pathway protein M; KEGG: sml:Smlt0695 general secretion pathway protein M YP_004791128.1 KEGG: smt:Smal_0555 general secretion pathway protein N YP_004791129.1 KEGG: sml:Smlt0697 general secretion pathway protein D; TIGRFAM: Type II secretion system gspD; PFAM: Type II/III secretion system; NolW-like YP_004791130.1 KEGG: sml:Smlt0701 polysaccharide production-like protein YP_004791131.1 PFAM: Glycosyl transferase, family 2; KEGG: sml:Smlt0702 glycosyl transferase YP_004791132.1 TIGRFAM: Nicotinate phosphoribosyltransferase; HAMAP: Nicotinate phosphoribosyltransferase; KEGG: smt:Smal_0559 nicotinate phosphoribosyltransferase; PFAM: Nicotinate phosphoribosyltransferase-like YP_004791133.1 KEGG: smt:Smal_0560 hypothetical protein YP_004791134.1 PFAM: Fimbrial protein, C-terminal; KEGG: smt:Smal_0561 fimbrial protein YP_004791135.1 PFAM: Pili assembly chaperone, N-terminal, bacterial; Pili assembly chaperone, C-terminal, bacterial; KEGG: sml:Smlt0707 pili chaperone protein YP_004791136.1 PFAM: Fimbrial biogenesis outer membrane usher protein; KEGG: sml:Smlt0708 outer membrane usher protein mrkc precursor YP_004791137.1 PFAM: Fimbrial protein, C-terminal; KEGG: smt:Smal_0564 fimbrial protein YP_004791138.1 TIGRFAM: UDP-N-acetylglucosamine 2-epimerase; KEGG: sml:Smlt0710 UDP-N-acetylglucosamine 2-epimerase; PFAM: UDP-N-acetylglucosamine 2-epimerase YP_004791139.1 KEGG: sml:Smlt0711 transmembrane anchor protein YP_004791140.1 PFAM: General secretory system II, protein E, N-terminal; KEGG: smt:Smal_0567 bacteriophage N4 adsorption protein B YP_004791141.1 KEGG: sml:Smlt0713 hypothetical protein YP_004791142.1 KEGG: smt:Smal_0569 hypothetical protein YP_004791143.1 PFAM: Xanthine/uracil/vitamin C permease; KEGG: sml:Smlt0715 transmembrane permease YP_004791144.1 TIGRFAM: ATP-binding cassette protein, ChvD family; PFAM: ABC transporter-like; KEGG: sml:Smlt0716 ABC transporter ATP-binding protein; SMART: ATPase, AAA+ type, core YP_004791145.1 KEGG: smt:Smal_0572 hypothetical protein YP_004791146.1 KEGG: sml:Smlt0718 serine hydroxymethyltransferase; PFAM: Serine hydroxymethyltransferase YP_004791147.1 KEGG: sml:Smlt0719 transmembrane protein YP_004791148.1 KEGG: smt:Smal_0575 hypothetical protein YP_004791149.1 TIGRFAM: Ribonucleotide reductase regulator NrdR-like; HAMAP: Transcriptional repressor nrdR; KEGG: smt:Smal_0576 transcriptional regulator NrdR; PFAM: ATP-cone YP_004791150.1 TIGRFAM: Riboflavin biosynthesis protein RibD; Riboflavin-specific deaminase, C-terminal; KEGG: smt:Smal_0577 riboflavin biosynthesis protein RibD; PFAM: Bacterial bifunctional deaminase-reductase, C-terminal; CMP/dCMP deaminase, zinc-binding YP_004791151.1 KEGG: smt:Smal_0578 hypothetical protein YP_004791152.1 KEGG: sml:Smlt0725 hypothetical protein YP_004791153.1 KEGG: smt:Smal_0579 hypothetical protein YP_004791154.1 KEGG: smt:Smal_0580 hypothetical protein YP_004791155.1 TIGRFAM: Lumazine-binding protein; KEGG: smt:Smal_0581 riboflavin synthase subunit alpha; PFAM: Lumazine-binding protein YP_004791156.1 TIGRFAM: DHBP synthase RibB; HAMAP: 3,4-dihydroxy-2-butanone 4-phosphate synthase; KEGG: smt:Smal_0582 3,4-dihydroxy-2-butanone 4-phosphate synthase; PFAM: DHBP synthase RibB; GTP cyclohydrolase II YP_004791157.1 TIGRFAM: 6,7-dimethyl-8-ribityllumazine synthase; HAMAP: 6,7-dimethyl-8-ribityllumazine synthase; KEGG: smt:Smal_0583 6,7-dimethyl-8-ribityllumazine synthase; PFAM: 6,7-dimethyl-8-ribityllumazine synthase YP_004791158.1 TIGRFAM: NusB antitermination factor; HAMAP: N utilization substance protein B-like protein; KEGG: sml:Smlt0730 transcription antitermination protein NusB; PFAM: NusB/RsmB/TIM44 YP_004791159.1 TIGRFAM: Thiamine-monophosphate kinase; KEGG: smt:Smal_0585 thiamine monophosphate kinase; PFAM: AIR synthase related protein; AIR synthase related protein, C-terminal YP_004791160.1 PFAM: Protein of unknown function DUF805; KEGG: smt:Smal_1937 hypothetical protein YP_004791161.1 KEGG: sml:Smlt0337 hypothetical protein YP_004791162.1 KEGG: smt:Smal_2288 outer membrane autotransporter barrel domain-containing protein; TIGRFAM: Outer membrane autotransporter barrel; PFAM: Autotransporter beta-domain; Pertactin YP_004791163.1 KEGG: smt:Smal_2288 outer membrane autotransporter barrel domain-containing protein; TIGRFAM: Outer membrane autotransporter barrel; PFAM: Autotransporter beta-domain; Pertactin YP_004791164.1 PFAM: Acyltransferase 3; KEGG: sml:Smlt0737 O-antigen acetylase YP_004791165.1 KEGG: smt:Smal_0587 FAD linked oxidase domain-containing protein; PFAM: FAD-linked oxidase, C-terminal; FAD linked oxidase, N-terminal YP_004791166.1 PFAM: Protein of unknown function DUF457, transmembrane; KEGG: smt:Smal_0588 membrane-bound metal-dependent hydrolase YP_004791167.1 TIGRFAM: Uncharacterised protein family UPF0102; HAMAP: Uncharacterised protein family UPF0102; KEGG: smt:Smal_0589 hypothetical protein; PFAM: Uncharacterised protein family UPF0102 YP_004791168.1 PFAM: LppC lipoprotein; KEGG: smt:Smal_0590 LppC family lipoprotein YP_004791169.1 TIGRFAM: Uncharacterised protein family UPF0011; HAMAP: Ribosomal RNA small subunit methyltransferase I; KEGG: sml:Smlt0743 tetrapyrrole (corrin/porphyrin) methylase; PFAM: Tetrapyrrole methylase YP_004791170.1 PFAM: Electron transfer DM13; KEGG: smt:Smal_0592 hypothetical protein YP_004791171.1 PFAM: Protein of unknown function DUF833; KEGG: smt:Smal_0593 hypothetical protein YP_004791172.1 TIGRFAM: MraZ; HAMAP: MraZ; KEGG: sml:Smlt0747 cell division protein MraZ; PFAM: MraZ domain YP_004791173.1 TIGRFAM: S-adenosyl-L-methionine-dependent methyltransferase, MraW; HAMAP: S-adenosyl-L-methionine-dependent methyltransferase, MraW; KEGG: sml:Smlt0748 S-adenosyl-methyltransferase MraW; PFAM: S-adenosyl-L-methionine-dependent methyltransferase, MraW YP_004791174.1 KEGG: smt:Smal_0596 cell division protein FtsL; TIGRFAM: Cell division protein, FtsL -like; PFAM: Cell division protein FtsL YP_004791175.1 KEGG: sml:Smlt0750 penicillin-binding protein 3; PFAM: Penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain YP_004791176.1 PFAM: Mur ligase, central; Mur ligase, N-terminal; Mur ligase, C-terminal; TIGRFAM: UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase; HAMAP: UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase; KEGG: smt:Smal_0598 UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase YP_004791177.1 TIGRFAM: UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase; KEGG: smt:Smal_0599 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase; PFAM: Mur ligase, central; Mur ligase, N-terminal; Mur ligase, C-terminal YP_004791178.1 KEGG: sml:Smlt0753 phospho-N-acetylmuramoyl-pentapeptide-transferase; TIGRFAM: Phospho-N-acetylmuramoyl-pentapeptide transferase; PFAM: Glycosyl transferase, family 4, conserved region; Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site YP_004791179.1 KEGG: sml:Smlt0754 cell division protein FtsW; TIGRFAM: Cell division protein FtsW; PFAM: Cell cycle protein YP_004791180.1 TIGRFAM: N-acetylglucosaminyltransferase, MurG; HAMAP: UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; KEGG: smt:Smal_0602 UDPdiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; PFAM: Glycosyl transferase, family 28, C-terminal; Glycosyl transferase, family 28 YP_004791181.1 PFAM: Mur ligase, N-terminal; Mur ligase, central; Mur ligase, C-terminal; TIGRFAM: UDP-N-acetylmuramate-alanine ligase; HAMAP: UDP-N-acetylmuramate-alanine ligase; KEGG: smt:Smal_0603 UDP-N-acetylmuramate--L-alanine ligase YP_004791182.1 PFAM: D-alanine--D-alanine ligase, C-terminal; D-alanine--D-alanine ligase, N-terminal; TIGRFAM: D-alanine--D-alanine ligase; HAMAP: D-alanine--D-alanine ligase; KEGG: smt:Smal_0604 D-alanine--D-alanine ligase YP_004791183.1 PFAM: Cell division protein FtsQ; Polypeptide-transport-associated, FtsQ-type; KEGG: sml:Smlt0758 cell division protein FtsQ YP_004791184.1 KEGG: smt:Smal_0606 cell division protein FtsA; TIGRFAM: Cell division protein family FtsA; PFAM: Cell division protein FtsA domain YP_004791185.1 KEGG: smt:Smal_0607 cell division protein FtsZ; TIGRFAM: Cell division protein FtsZ, N-terminal; PFAM: Tubulin/FtsZ, GTPase domain; Tubulin/FtsZ, 2-layer sandwich domain YP_004791186.1 KEGG: smt:Smal_0608 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; TIGRFAM: UDP-3-O-acyl N-acetylglucosamine deacetylase; PFAM: UDP-3-O-acyl N-acetylglucosamine deacetylase YP_004791187.1 PFAM: Protein of unknown function DUF721; KEGG: sml:Smlt0762 hypothetical protein YP_004791188.1 PFAM: Peptidase M23; KEGG: sml:Smlt0763 exported peptidase YP_004791189.1 TIGRFAM: SecA protein; HAMAP: Protein translocase subunit secA; KEGG: smt:Smal_0611 preprotein translocase subunit SecA; PFAM: SecA DEAD-like; SecA preprotein cross-linking region; SecA Wing/Scaffold; SEC-C motif YP_004791190.1 KEGG: smt:Smal_0612 hypothetical protein; TIGRFAM: Mutator MutT protein; PFAM: Thiamine monophosphate synthase; NUDIX hydrolase domain YP_004791191.1 KEGG: smt:Smal_0613 hypothetical protein YP_004791192.1 TIGRFAM: 5,10-methylenetetrahydrofolate reductase; KEGG: smt:Smal_0614 5,10-methylenetetrahydrofolate reductase; PFAM: Methylenetetrahydrofolate reductase YP_004791193.1 PFAM: Alpha/beta hydrolase fold-1; KEGG: smt:Smal_0615 alpha/beta hydrolase fold domain-containing protein YP_004791194.1 PFAM: Signal transduction histidine kinase, internal region; ATP-binding region, ATPase-like; KEGG: smt:Smal_0616 signal transduction histidine kinase LytS YP_004791195.1 KEGG: smt:Smal_0617 LytTR family two component transcriptional regulator; PFAM: Signal transduction response regulator, receiver region; LytTr DNA-binding region; SMART: Signal transduction response regulator, receiver region YP_004791196.1 PFAM: Amidohydrolase 1; KEGG: sml:Smlt0771 membrane anchor amidohydrolase YP_004791197.1 KEGG: smt:Smal_0622 hypothetical protein YP_004791198.1 TIGRFAM: TonB, C-terminal; KEGG: smt:Smal_0623 TonB family protein YP_004791199.1 KEGG: sml:Smlt0773 hypothetical protein YP_004791200.1 KEGG: sml:Smlt0774 hypothetical protein; TIGRFAM: Conserved hypothetical protein CHP00011; PFAM: YbaK/aminoacyl-tRNA synthetase associated region YP_004791201.1 PFAM: S-adenosyl-L-homocysteine hydrolase; S-adenosyl-L-homocysteine hydrolase, NAD binding; TIGRFAM: S-adenosyl-L-homocysteine hydrolase; HAMAP: Adenosylhomocysteinase; KEGG: sml:Smlt0775 S-adenosyl-L-homocysteine hydrolase YP_004791202.1 KEGG: sml:Smlt0777 hypothetical protein YP_004791203.1 HAMAP: Phosphoenolpyruvate carboxylase; KEGG: sml:Smlt0778 phosphoenolpyruvate carboxylase; PFAM: Phosphoenolpyruvate carboxylase YP_004791204.1 PFAM: Thioesterase superfamily; KEGG: sml:Smlt0779 acyl-CoA thioester hydrolase YP_004791205.1 PFAM: S-adenosylmethionine synthetase; TIGRFAM: S-adenosylmethionine synthetase; HAMAP: S-adenosylmethionine synthase; KEGG: sml:Smlt0780 S-adenosylmethionine synthetase YP_004791206.1 KEGG: sml:Smlt0781 acyltransferase; PFAM: Phospholipid/glycerol acyltransferase; SMART: Phospholipid/glycerol acyltransferase YP_004791207.1 PFAM: Metallophosphoesterase; KEGG: smt:Smal_0632 metallophosphoesterase YP_004791208.1 PFAM: Protein of unknown function DUF457, transmembrane; KEGG: sml:Smlt0783 membrane-bound metal-dependent hydrolase YP_004791209.1 PFAM: Methyltransferase type 11; KEGG: sml:Smlt0786 hypothetical protein YP_004791210.1 KEGG: sml:Smlt0787 tRNA-dihydrouridine synthase B; TIGRFAM: tRNA-dihydrouridine synthase, TIM-barrel, NifR3; PFAM: tRNA-dihydrouridine synthase YP_004791211.1 KEGG: sml:Smlt0788 transmembrane protein YP_004791212.1 KEGG: smt:Smal_0641 ribokinase; PFAM: Carbohydrate/purine kinase YP_004791213.1 PFAM: Na dependent nucleoside transporter, C-terminal; Na dependent nucleoside transporter; Nucleoside recognition; KEGG: sml:Smlt0792 Na+ dependent nucleoside transporter YP_004791214.1 PFAM: Aldo/keto reductase; KEGG: sml:Smlt0793 aldo/keto reductase family protein YP_004791215.1 PFAM: Hemin uptake protein hemP; KEGG: smt:Smal_0644 hypothetical protein YP_004791216.1 KEGG: smt:Smal_0645 TonB-dependent hemoglobin/transferrin/lactoferrin family receptor; TIGRFAM: TonB-dependent haemoglobin/transferrin/lactoferrin receptor; TonB-dependent haem/haemoglobin receptor; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug YP_004791217.1 KEGG: smt:Smal_0646 hypothetical protein YP_004791218.1 KEGG: smt:Smal_0647 hypothetical protein YP_004791219.1 KEGG: smt:Smal_0648 hypothetical protein YP_004791220.1 PFAM: Protein of unknown function DUF486; KEGG: xom:XOO_3560 hypothetical protein YP_004791221.1 PFAM: Protein of unknown function DUF214, permase predicted; KEGG: smt:Smal_0649 hypothetical protein YP_004791222.1 PFAM: ABC transporter-like; KEGG: sml:Smlt0799 ATP-binding ABC transporter protein; SMART: ATPase, AAA+ type, core YP_004791223.1 KEGG: sml:Smlt0800 acyl-CoA thioesterase I; PFAM: Lipase, GDSL YP_004791224.1 KEGG: smt:Smal_0652 winged helix family two component transcriptional regulator; PFAM: Signal transduction response regulator, receiver region; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver region YP_004791225.1 KEGG: smt:Smal_0653 integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region YP_004791226.1 PFAM: Lipase, GDSL; KEGG: smt:Smal_0654 G-D-S-L family lipolytic protein YP_004791227.1 PFAM: Diacylglycerol kinase, prokaryotic; KEGG: sml:Smlt0804 diacylglycerol kinase YP_004791228.1 PFAM: Integral membrane protein TerC; KEGG: sml:Smlt0805 transmembrane protein YP_004791229.1 PFAM: Major facilitator superfamily MFS-1; KEGG: sml:Smlt0806 transmembrane MFS family protein YP_004791231.1 PFAM: LemA; KEGG: smt:Smal_0658 LemA family protein YP_004791232.1 PFAM: Protein of unknown function DUF477; KEGG: smt:Smal_0659 hypothetical protein YP_004791233.1 PFAM: Protein of unknown function DUF477; KEGG: sml:Smlt0811 hypothetical protein YP_004791234.1 TIGRFAM: Prolipoprotein diacylglyceryl transferase; HAMAP: Prolipoprotein diacylglyceryl transferase; KEGG: sml:Smlt0812 prolipoprotein diacylglyceryl transferase; PFAM: Prolipoprotein diacylglyceryl transferase YP_004791235.1 PFAM: Thymidylate synthase, C-terminal; TIGRFAM: Thymidylate synthase, C-terminal; HAMAP: Thymidylate synthase; KEGG: smt:Smal_0662 thymidylate synthase YP_004791236.1 KEGG: smt:Smal_0664 dihydrofolate reductase; PFAM: Dihydrofolate reductase region YP_004791237.1 PFAM: Protein of unknown function DUF1287; KEGG: smt:Smal_0665 hypothetical protein YP_004791238.1 PFAM: Metallophosphoesterase; TIGRFAM: Bis(5'-nucleosyl)-tetraphosphatase (symmetrical); KEGG: sml:Smlt0816 diadenosine tetraphosphatase; HAMAP: Bis(5'-nucleosyl)-tetraphosphatase, symmetrical YP_004791239.1 PFAM: ApaG; KEGG: sml:Smlt0817 ApaG protein YP_004791240.1 SMART: Ribosomal RNA adenine methylase transferase, N-terminal; TIGRFAM: Ribosomal RNA adenine dimethylase; KEGG: sml:Smlt0818 dimethyladenosine transferase; HAMAP: Ribosomal RNA adenine dimethylase; PFAM: Ribosomal RNA adenine methylase transferase YP_004791241.1 PFAM: Pyridoxal phosphate (active vitamin B6) biosynthesis PdxA; TIGRFAM: Pyridoxal phosphate (active vitamin B6) biosynthesis PdxA; HAMAP: Pyridoxal phosphate (active vitamin B6) biosynthesis PdxA; KEGG: smt:Smal_0669 4-hydroxythreonine-4-phosphate dehydrogenase YP_004791242.1 KEGG: sml:Smlt0820 survival protein SurA; HAMAP: Chaperone surA; PFAM: SurA N-terminal; Peptidyl-prolyl cis-trans isomerase, PpiC-type YP_004791243.1 KEGG: sml:Smlt0821 organic solvent tolerance protein; HAMAP: LPS-assembly protein lptD; PFAM: Organic solvent tolerance protein; OstA-like protein YP_004791244.1 PFAM: Histone deacetylase superfamily; KEGG: smt:Smal_0672 histone deacetylase superfamily YP_004791245.1 TIGRFAM: Adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase, PduO-type, N-terminal; KEGG: smt:Smal_0673 ATP/cobalamin adenosyltransferase; PFAM: Adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase, EutT/PduO type YP_004791246.1 KEGG: sml:Smlt0824 transmembrane protein YP_004791247.1 KEGG: sml:Smlt0825 2-octaprenyl-6-methoxyphenyl hydroxylase; TIGRFAM: 2-polyprenyl-6-methoxyphenol 4-hydroxylase; Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6; PFAM: FAD dependent oxidoreductase YP_004791248.1 KEGG: smt:Smal_0676 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6; PFAM: Monooxygenase, FAD-binding; FAD dependent oxidoreductase YP_004791249.1 KEGG: sml:Smlt0827 hypothetical protein YP_004791250.1 HAMAP: YdgE, RNA 2'-O-ribose methyltranserase; KEGG: smt:Smal_0678 RNA 2'-O-ribose methyltransferase YP_004791251.1 PFAM: CMP/dCMP deaminase, zinc-binding; KEGG: sml:Smlt0829 nucleotide deaminase YP_004791252.1 KEGG: sml:Smlt0830 hypothetical protein YP_004791253.1 KEGG: sml:Smlt0831 transmembrane protein YP_004791254.1 PFAM: Glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain; Glutamyl/glutaminyl-tRNA synthetase, class Ic, anti-codon binding domain; TIGRFAM: Glutaminyl-tRNA synthetase, class Ic; HAMAP: Glutaminyl-tRNA synthetase; KEGG: smt:Smal_0682 glutaminyl-tRNA synthetase YP_004791255.1 KEGG: sml:Smlt0833 hypothetical protein YP_004791256.1 PFAM: Peptide methionine sulphoxide reductase MsrA; TIGRFAM: Peptide methionine sulphoxide reductase MsrA; HAMAP: Peptide methionine sulphoxide reductase MsrA; KEGG: smt:Smal_0684 methionine sulfoxide reductase A YP_004791257.1 PFAM: Transaldolase; KEGG: smt:Smal_0685 transaldolase B YP_004791258.1 PFAM: Transcription elongation factor, GreA/GreB region, prokaryotic; KEGG: smt:Smal_0686 GreA/GreB family elongation factor YP_004791259.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: sml:Smlt0839 hydrogen peroxide-inducible genes activator YP_004791260.1 TIGRFAM: Alkyl hydroperoxide reductase, subunit F; KEGG: sml:Smlt0840 alkyl hydroperoxide reductase subunit F; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_004791261.1 TIGRFAM: Peroxiredoxin; KEGG: sml:Smlt0841 alkyl hydroperoxide reductase subunit C; PFAM: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Peroxiredoxin, C-terminal YP_004791262.1 TIGRFAM: Protein-(glutamine-N5) methyltransferase, release factor-specific; Modification methylase HemK; KEGG: sml:Smlt0842 HemK protein, protoporphyrinogen oxidase; PFAM: Methyltransferase small YP_004791263.1 KEGG: sml:Smlt0843 proline iminopeptidase; TIGRFAM: Peptidase S33, proline iminopeptidase 1; PFAM: Alpha/beta hydrolase fold-1 YP_004791264.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: sml:Smlt0844 LysR family transcriptional regulator YP_004791265.1 PFAM: Major facilitator superfamily MFS-1; KEGG: smt:Smal_0693 major facilitator superfamily protein YP_004791266.1 PFAM: N-formylglutamate amidohydrolase; KEGG: sml:Smlt0846 hypothetical protein YP_004791267.1 PFAM: NUDIX hydrolase domain; KEGG: smt:Smal_0696 NUDIX hydrolase YP_004791268.1 KEGG: sml:Smlt0848 exodeoxyribonuclease; PFAM: 5'-3' exonuclease, N-terminal resolvase-like domain; 5'-3' exonuclease, SAM-fold domain; SMART: 5'-3' exonuclease, N-terminal; Helix-hairpin-helix motif, class 2 YP_004791269.1 PFAM: Nitroreductase-like; KEGG: sml:Smlt0849 nitroreductase family protein YP_004791270.1 PFAM: Protein of unknown function DUF1631; KEGG: sml:Smlt0851 hypothetical protein YP_004791271.1 KEGG: sml:Smlt0852 NAD(P) transhydrogenase subunit alpha PntAa; PFAM: Alanine dehydrogenase/PNT, C-terminal; Alanine dehydrogenase/PNT, N-terminal YP_004791272.1 KEGG: sml:Smlt0853 hypothetical protein YP_004791273.1 KEGG: smt:Smal_0702 hypothetical protein YP_004791274.1 KEGG: sml:Smlt0855 RNA polymerase factor sigma-70; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2 YP_004791275.1 KEGG: sml:Smlt0856 NAD(P) transhydrogenase subunit alpha PntAb YP_004791276.1 KEGG: sml:Smlt0857 NAD(P) transhydrogenase subunit beta PntB; PFAM: NAD(P) transhydrogenase, beta subunit YP_004791277.1 KEGG: smt:Smal_0706 hypothetical protein YP_004791278.1 manually curated; TIGRFAM: FeS assembly SUF system protein SufT, KEGG: sml:Smlt0859 hypothetical protein; PFAM: Protein of unknown function DUF59 YP_004791279.1 TIGRFAM: Branched-chain amino acid aminotransferase II; KEGG: sml:Smlt0860 branched-chain amino acid aminotransferase; PFAM: Aminotransferase, class IV YP_004791280.1 KEGG: smt:Smal_0709 hypothetical protein YP_004791281.1 PFAM: HTH transcriptional regulator, ArsR; KEGG: smt:Smal_0710 ArsR family transcriptional regulator YP_004791282.1 PFAM: Peptidase M23; KEGG: smt:Smal_0711 peptidase M23 YP_004791283.1 KEGG: sml:Smlt0861 secreted serine protease; PFAM: Peptidase S8/S53, subtilisin/kexin/sedolisin; Peptidase, C-terminal, archaeal/bacterial YP_004791284.1 PFAM: Asparaginase/glutaminase; KEGG: smt:Smal_0713 asparaginase YP_004791285.1 KEGG: smt:Smal_0714 hypothetical protein YP_004791286.1 KEGG: smt:Smal_0715 flavoprotein WrbA; TIGRFAM: Flavoprotein WrbA; PFAM: Flavodoxin/nitric oxide synthase YP_004791287.1 TIGRFAM: Ribonuclease BN; HAMAP: UPF0761 membrane protein yihY; KEGG: sml:Smlt0865 ribonuclease BN/unknown domain fusion protein; PFAM: Ribonuclease BN-related YP_004791288.1 PFAM: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; KEGG: smt:Smal_0717 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen YP_004791289.1 KEGG: sml:Smlt0868 polyphosphate kinase/regulator; TIGRFAM: polyphosphate kinase 2; PFAM: Polyphosphate kinase 2 YP_004791290.1 PFAM: Tetratricopeptide TPR-1; KEGG: smt:Smal_0720 tetratricopeptide repeat-containing protein YP_004791291.1 TIGRFAM: Peptide chain release factor 1; HAMAP: Peptide chain release factor 1; KEGG: smt:Smal_0721 peptide chain release factor 1; PFAM: Class I peptide chain release factor; Peptide chain release factor YP_004791292.1 TIGRFAM: Tetrapyrrole biosynthesis, glutamyl-tRNA reductase; HAMAP: Tetrapyrrole biosynthesis, glutamyl-tRNA reductase; KEGG: sml:Smlt0871 glutamyl-tRNA reductase; PFAM: Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, N-terminal; Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase; Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, C-terminal YP_004791293.1 PFAM: Tetratricopeptide TPR2; Tetratricopeptide TPR-1; KEGG: smt:Smal_0723 tetratricopeptide repeat-containing protein YP_004791294.1 TIGRFAM: Outer membrane lipoprotein LolB; HAMAP: Outer-membrane lipoprotein lolB; KEGG: smt:Smal_0724 outer membrane lipoprotein LolB; PFAM: Outer membrane lipoprotein LolB YP_004791295.1 PFAM: GHMP kinase; GHMP kinase, C-terminal; TIGRFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; HAMAP: 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; KEGG: sml:Smlt0874 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase YP_004791296.1 TIGRFAM: Phosphoribosyl pyrophosphokinase; KEGG: smt:Smal_0726 ribose-phosphate pyrophosphokinase; PFAM: Phosphoribosyltransferase YP_004791297.1 TIGRFAM: Ribosomal protein L25; HAMAP: 50S ribosomal protein L25; Ribosomal protein L25; KEGG: sml:Smlt0876 50S ribosomal protein L25/general stress protein Ctc; PFAM: Ribosomal protein L25, N-terminal YP_004791298.1 PFAM: Peptidyl-tRNA hydrolase; TIGRFAM: Peptidyl-tRNA hydrolase; HAMAP: Peptidyl-tRNA hydrolase; KEGG: smt:Smal_0728 peptidyl-tRNA hydrolase YP_004791299.1 KEGG: smt:Smal_0729 GTP-dependent nucleic acid-binding protein EngD; TIGRFAM: Conserved hypothetical protein CHP00092; PFAM: Protein of unknown function DUF933; GTP-binding protein, HSR1-related YP_004791300.1 KEGG: sml:Smlt0880 virulence-associated autotransporter protein; TIGRFAM: Outer membrane autotransporter barrel; PFAM: Autotransporter beta-domain; Pertactin YP_004791301.1 KEGG: sml:Smlt0881 two-component response regulator transcriptional regulator; PFAM: Signal transduction response regulator, receiver region; Transcription regulator LuxR, C-terminal; SMART: Signal transduction response regulator, receiver region; Transcription regulator LuxR, C-terminal YP_004791302.1 KEGG: sml:Smlt0882 sensor histidine kinase/response regulator fusion protein; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; Signal transduction response regulator, receiver region; Signal transduction histidine kinase, phosphotransfer (Hpt) region; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; Signal transduction response regulator, receiver region YP_004791303.1 KEGG: sml:Smlt0883 two-component response regulator transcriptional regulator; PFAM: Diguanylate phosphodiesterase, predicted; Signal transduction response regulator, receiver region; SMART: Diguanylate phosphodiesterase, predicted; Signal transduction response regulator, receiver region YP_004791304.1 KEGG: sml:Smlt0884 two-component sensor histidine kinase response regulator fusion protein; PFAM: Signal transduction response regulator, receiver region; ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SMART: Signal transduction response regulator, receiver region; ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region YP_004791305.1 PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: sml:Smlt0885 TonB dependent receptor protein YP_004791306.1 PFAM: Peptidase S51, dipeptidase E; KEGG: smt:Smal_0740 peptidase S51 dipeptidase E YP_004791307.1 KEGG: smt:Smal_0741 peptidase T2 asparaginase 2; PFAM: Peptidase T2, asparaginase 2 YP_004791308.1 KEGG: sml:Smlt0904 elongation factor Tu; TIGRFAM: Translation elongation factor EFTu/EF1A, bacterial/organelle; Small GTP-binding protein; PFAM: Protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, domain 2; Translation elongation factor EFTu/EF1A, C-terminal YP_004791309.1 KEGG: smt:Smal_0743 preprotein translocase subunit SecE; TIGRFAM: SecE subunit of protein translocation complex; PFAM: Protein secE/sec61-gamma protein YP_004791310.1 TIGRFAM: Transcription antitermination protein, NusG; PFAM: Transcription antitermination protein, NusG, N-terminal; KOW; KEGG: sml:Smlt0892 transcription antitermination protein NusG; SMART: Transcription antitermination protein, NusG, N-terminal; KOW YP_004791311.1 TIGRFAM: Ribosomal protein L11, bacterial-type; PFAM: Ribosomal protein L11, N-terminal; Ribosomal protein L11, C-terminal; KEGG: smt:Smal_0745 50S ribosomal protein L11; SMART: Ribosomal protein L11 YP_004791312.1 KEGG: sml:Smlt0895 50S ribosomal protein L1; TIGRFAM: Ribosomal protein L1, bacterial-type; PFAM: Ribosomal protein L1 YP_004791313.1 PFAM: Ribosomal protein L10; KEGG: sml:Smlt0896 50S ribosomal protein L10 YP_004791314.1 TIGRFAM: Ribosomal protein L7/L12; HAMAP: Ribosomal protein L7/L12; KEGG: smt:Smal_0748 50S ribosomal protein L7/L12; PFAM: Ribosomal protein L7/L12, C-terminal YP_004791315.1 TIGRFAM: DNA-directed RNA polymerase, beta subunit, bacterial-type; HAMAP: DNA-directed RNA polymerase subunit beta; KEGG: sml:Smlt0898 DNA-directed RNA polymerase subunit beta; PFAM: DNA-directed RNA polymerase, subunit 2, domain 6; RNA polymerase Rpb2, domain 3; RNA polymerase, beta subunit, protrusion; RNA polymerase Rpb2, domain 2; DNA-directed RNA polymerase, beta subunit, external 1 domain; RNA polymerase Rpb2, domain 7 YP_004791316.1 SMART: RNA polymerase, N-terminal; TIGRFAM: DNA-directed RNA polymerase, subunit beta-prime; KEGG: sml:Smlt0899 DNA-directed RNA polymerase subunit beta'; HAMAP: DNA-directed RNA polymerase subunit beta'; PFAM: RNA polymerase Rpb1, domain 1; RNA polymerase, alpha subunit; RNA polymerase Rpb1, domain 3; RNA polymerase Rpb1, domain 4; RNA polymerase Rpb1, domain 5 YP_004791317.1 KEGG: smt:Smal_0751 30S ribosomal protein S12; TIGRFAM: Ribosomal protein S12, bacterial-type; PFAM: Ribosomal protein S12/S23 YP_004791318.1 KEGG: smt:Smal_0752 30S ribosomal protein S7; TIGRFAM: Ribosomal protein S7, bacterial-type; PFAM: Ribosomal protein S7 YP_004791319.1 KEGG: sml:Smlt0903 elongation factor G; TIGRFAM: Translation elongation factor EFG/EF2; Small GTP-binding protein; PFAM: Protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, domain 2; Translation elongation factor EFG/EF2, domain IV; Translation elongation factor EFG/EF2, C-terminal YP_004791320.1 KEGG: sml:Smlt0904 elongation factor Tu; TIGRFAM: Translation elongation factor EFTu/EF1A, bacterial/organelle; Small GTP-binding protein; PFAM: Protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, domain 2; Translation elongation factor EFTu/EF1A, C-terminal YP_004791321.1 TIGRFAM: Ribosomal protein S10, bacterial; HAMAP: 30S ribosomal protein S10; KEGG: smt:Smal_0755 30S ribosomal protein S10; PFAM: Ribosomal protein S10 YP_004791322.1 KEGG: smt:Smal_0756 50S ribosomal protein L3; TIGRFAM: Ribosomal protein L3, bacterial/organelle-type; PFAM: Ribosomal protein L3 YP_004791323.1 PFAM: Ribosomal protein L4/L1e; KEGG: smt:Smal_0757 50S ribosomal protein L4 YP_004791324.1 PFAM: Ribosomal protein L25/L23; KEGG: smt:Smal_0758 50S ribosomal protein L23 YP_004791325.1 KEGG: smt:Smal_0759 50S ribosomal protein L2; TIGRFAM: Ribosomal protein L2, bacterial-type; PFAM: Ribosomal protein L2 YP_004791326.1 KEGG: sml:Smlt0910 30S ribosomal protein S19; TIGRFAM: Ribosomal protein S19, bacterial-type; PFAM: Ribosomal protein S19/S15 YP_004791327.1 KEGG: smt:Smal_0761 50S ribosomal protein L22; TIGRFAM: Ribosomal protein L22, bacterial-type; PFAM: Ribosomal protein L22/L17 YP_004791328.1 TIGRFAM: Ribosomal protein S3, bacterial; PFAM: Ribosomal protein S3, C-terminal; Ribosomal protein S3, N-terminal; K Homology, type 2; KEGG: smt:Smal_0762 30S ribosomal protein S3; SMART: K Homology YP_004791329.1 TIGRFAM: Ribosomal protein L16; HAMAP: Ribosomal protein L16; KEGG: sml:Smlt0913 50S ribosomal protein L16; PFAM: Ribosomal protein L10e/L16 YP_004791330.1 KEGG: sml:Smlt0914 50S ribosomal protein L29; TIGRFAM: Ribosomal protein L29; PFAM: Ribosomal protein L29 YP_004791331.1 KEGG: sml:Smlt0915 30S ribosomal protein S17; TIGRFAM: Ribosomal protein S17, bacterial-type; PFAM: Ribosomal protein S17 YP_004791332.1 KEGG: smt:Smal_0766 50S ribosomal protein L14; TIGRFAM: Ribosomal protein L14, bacterial-type; PFAM: Ribosomal protein L14b/L23e YP_004791333.1 TIGRFAM: Ribosomal protein L24; PFAM: KOW; KEGG: sml:Smlt0917 50S ribosomal protein L24; SMART: KOW YP_004791334.1 PFAM: Ribosomal protein L5; KEGG: smt:Smal_0768 50S ribosomal protein L5 YP_004791335.1 KEGG: sml:Smlt0919 30S ribosomal protein S14; HAMAP: 30S ribosomal protein S14; PFAM: Ribosomal protein S14 YP_004791336.1 PFAM: Ribosomal protein S8; KEGG: sml:Smlt0920 30S ribosomal protein S8 YP_004791337.1 KEGG: sml:Smlt0921 50S ribosomal protein L6; TIGRFAM: Ribosomal protein L6, bacterial-type; PFAM: Ribosomal protein L6, alpha-beta domain YP_004791338.1 KEGG: sml:Smlt0922 50S ribosomal protein L18; TIGRFAM: Ribosomal protein L18, bacterial; PFAM: Ribosomal protein L18/L5 YP_004791339.1 KEGG: sml:Smlt0923 30S ribosomal protein S5; TIGRFAM: Ribosomal protein S5, bacterial-type; PFAM: Ribosomal protein S5, N-terminal; Ribosomal protein S5, C-terminal YP_004791340.1 KEGG: sml:Smlt0924 50S ribosomal protein L30; TIGRFAM: Ribosomal protein L30, bacterial-type; PFAM: Ribosomal protein L30p/L7e, conserved region YP_004791341.1 KEGG: smt:Smal_0775 50S ribosomal protein L15; TIGRFAM: Ribosomal protein L15, bacterial-type; PFAM: Ribosomal protein L15 YP_004791342.1 KEGG: sml:Smlt0926 preprotein translocase subunit SecY; TIGRFAM: SecY protein; PFAM: SecY protein YP_004791343.1 KEGG: sml:Smlt0928 30S ribosomal protein S13; TIGRFAM: Ribosomal protein S13, bacterial-type; PFAM: Ribosomal protein S13 YP_004791344.1 KEGG: smt:Smal_0778 30S ribosomal protein S11; TIGRFAM: Ribosomal protein S11, bacterial-type; PFAM: Ribosomal protein S11 YP_004791345.1 TIGRFAM: Ribosomal protein S4, bacterial-type; PFAM: Ribosomal protein S4; RNA-binding S4; KEGG: smt:Smal_0779 30S ribosomal protein S4; SMART: RNA-binding S4 YP_004791346.1 TIGRFAM: DNA-directed RNA polymerase, alpha subunit; PFAM: DNA-directed RNA polymerase, insert; RNA polymerase, alpha subunit, C-terminal; DNA-directed RNA polymerase, dimerisation; KEGG: sml:Smlt0931 DNA-directed RNA polymerase subunit alpha; SMART: DNA-directed RNA polymerase, RpoA/D/Rpb3-type YP_004791347.1 TIGRFAM: Ribosomal protein L17; HAMAP: 50S ribosomal protein L17; KEGG: sml:Smlt0933 50S ribosomal protein L17; PFAM: Ribosomal protein L17 YP_004791348.1 KEGG: smt:Smal_0782 disulfide bond formation protein B; HAMAP: Disulfide bond formation protein B; PFAM: Disulphide bond formation protein DsbB YP_004791349.1 PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: sml:Smlt0936 TonB potential colicin receptor YP_004791350.1 TIGRFAM: DAHP synthetase, class II; KEGG: sml:Smlt0937 phospho-2-dehydro-3-deoxyheptonate aldolase; PFAM: DAHP synthetase, class II YP_004791351.1 PFAM: Mechanosensitive ion channel MscS; KEGG: smt:Smal_0785 mechanosensitive ion channel MscS YP_004791352.1 KEGG: sml:Smlt0940 amidase; PFAM: Amidase YP_004791353.1 PFAM: Protein of unknown function DUF2068, transmembrane; KEGG: sml:Smlt0941 transmembrane protein YP_004791354.1 KEGG: smt:Smal_0788 GTP-binding protein TypA; TIGRFAM: GTP-binding protein TypA; Small GTP-binding protein; PFAM: Protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, domain 2; Translation elongation factor EFG/EF2, C-terminal YP_004791355.1 KEGG: sml:Smlt0943 peptidyl-prolyl cis-trans isomerase; PFAM: Peptidyl-prolyl cis-trans isomerase, cyclophilin-type YP_004791356.1 KEGG: sml:Smlt0944 malate dehydrogenase; TIGRFAM: Malate dehydrogenase, NAD/NADP; PFAM: Lactate/malate dehydrogenase YP_004791357.1 PFAM: Pseudouridine synthase, RsuA and RluB/C/D/E/F; KEGG: smt:Smal_0791 pseudouridine synthase YP_004791358.1 TIGRFAM: Propionate--CoA ligase; KEGG: sml:Smlt0947 propionyl-CoA synthetase; PFAM: AMP-dependent synthetase/ligase YP_004791359.1 KEGG: sml:Smlt0948 hypothetical protein YP_004791360.1 PFAM: Suppressor of fused; KEGG: sml:Smlt0949 aminotransferase/butyrosin synthesis protein YP_004791361.1 PFAM: Glutathione S-transferase, N-terminal; KEGG: smt:Smal_0795 glutathione S-transferase domain-containing protein YP_004791362.1 PFAM: Cell wall hydrolase, SleB; KEGG: sml:Smlt0951 cell wall hydrolase YP_004791363.1 KEGG: smt:Smal_0797 NADH:flavin oxidoreductase/NADH oxidase; PFAM: NADH:flavin oxidoreductase/NADH oxidase, N-terminal; FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_004791364.1 PFAM: Protein of unknown function DUF161; KEGG: sml:Smlt0953 transmembrane protein YP_004791365.1 KEGG: smt:Smal_0799 zinc-binding alcohol dehydrogenase family protein; TIGRFAM: Alcohol dehydrogenase, zinc-binding type 1; PFAM: Alcohol dehydrogenase, zinc-binding; Alcohol dehydrogenase GroES-like YP_004791366.1 PFAM: Outer membrane protein, OmpA/MotB, C-terminal; KEGG: smt:Smal_0800 OmpA/MotB domain-containing protein YP_004791367.1 KEGG: sml:Smlt0956 hypothetical protein YP_004791368.1 TIGRFAM: Pseudouridine synthase, RsuA and RluB/E/F; PFAM: Pseudouridine synthase, RsuA and RluB/C/D/E/F; RNA-binding S4; KEGG: smt:Smal_0802 pseudouridine synthase; SMART: RNA-binding S4 YP_004791369.1 KEGG: sml:Smlt0958 hypothetical protein YP_004791370.1 TIGRFAM: 2-amino-3-ketobutyrate coenzyme A ligase; KEGG: sml:Smlt0959 2-amino-3-ketobutyrate coenzyme A ligase; PFAM: Aminotransferase, class I/II YP_004791371.1 KEGG: sml:Smlt0960 hypothetical protein; TIGRFAM: Conserved hypothetical protein CHP02001; PFAM: Conserved hypothetical protein CHP02001 YP_004791372.1 PFAM: Alcohol dehydrogenase GroES-like; Alcohol dehydrogenase, zinc-binding; TIGRFAM: L-threonine 3-dehydrogenase; HAMAP: L-threonine 3-dehydrogenase; KEGG: sml:Smlt0961 L-threonine 3-dehydrogenase YP_004791373.1 PFAM: Peptidase S46; KEGG: sml:Smlt0962 hypothetical protein YP_004791374.1 PFAM: Phosphoglycerate mutase; KEGG: smt:Smal_0808 phosphoglycerate mutase YP_004791375.1 TIGRFAM: Folylpolyglutamate synthetase; KEGG: sml:Smlt0964 bifunctional folylpolyglutamate synthase/dihydrofolate synthase; PFAM: Mur ligase, central YP_004791376.1 PFAM: Sporulation/cell division region, bacteria; KEGG: sml:Smlt0965 hypothetical protein YP_004791377.1 PFAM: Colicin V production protein; KEGG: sml:Smlt0966 colicin V production protein YP_004791378.1 TIGRFAM: Amidophosphoribosyl transferase; KEGG: sml:Smlt0967 amidophosphoribosyltransferase; PFAM: Glutamine amidotransferase, class-II; Phosphoribosyltransferase YP_004791379.1 PFAM: Protein of unknown function DUF455; KEGG: sml:Smlt0968 hypothetical protein YP_004791380.1 PFAM: Protein of unknown function DUF2235; KEGG: smt:Smal_0814 rhs element Vgr protein YP_004791381.1 KEGG: sml:Smlt0970 hypothetical protein YP_004791382.1 TIGRFAM: UDP-2,3-diacylglucosamine hydrolase; HAMAP: UDP-2,3-diacylglucosamine hydrolase; KEGG: sml:Smlt0971 UDP-2,3-diacylglucosamine hydrolase; PFAM: Metallophosphoesterase YP_004791383.1 KEGG: sml:Smlt0972 transmembrane PAP family protein; PFAM: Phosphatidic acid phosphatase type 2/haloperoxidase; SMART: Phosphatidic acid phosphatase type 2/haloperoxidase YP_004791384.1 PFAM: Glycosyl transferase, group 1; KEGG: smt:Smal_0818 group 1 glycosyl transferase YP_004791385.1 PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: smt:Smal_0820 TonB-dependent receptor YP_004791386.1 TIGRFAM: exopolyphosphatase; KEGG: sml:Smlt0975 exopolyphosphatase; PFAM: Ppx/GppA phosphatase YP_004791387.1 PFAM: Polyphosphate kinase; TIGRFAM: polyphosphate kinase 1; HAMAP: Polyphosphate kinase; KEGG: sml:Smlt0976 polyphosphate kinase YP_004791388.1 TIGRFAM: Signal transduction histidine kinase, phosphate regulon sensor PhoR; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; KEGG: sml:Smlt0977 phosphate regulon two-component sensor histidine kinase transcriptional regulator; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region YP_004791389.1 TIGRFAM: Signal transduction response regulator, phosphate regulon transcriptional regulatory protein phoB; PFAM: Signal transduction response regulator, receiver region; Signal transduction response regulator, C-terminal; KEGG: sml:Smlt0978 phosphate regulon two-component response regulator transcriptional regulator; SMART: Signal transduction response regulator, receiver region YP_004791390.1 PFAM: Peptidase M48, Ste24p; KEGG: smt:Smal_0825 peptidase M48 Ste24p YP_004791391.1 KEGG: sml:Smlt0980 glutaredoxin; TIGRFAM: Glutaredoxin, GrxC; PFAM: Glutaredoxin YP_004791392.1 KEGG: smt:Smal_0827 alkylhydroperoxidase like protein; TIGRFAM: Alkylhydroperoxidase AhpD core; PFAM: Carboxymuconolactone decarboxylase YP_004791393.1 KEGG: sml:Smlt0982 isocitrate dehydrogenase; PFAM: Isocitrate/isopropylmalate dehydrogenase YP_004791394.1 PFAM: Isochorismatase-like; KEGG: smt:Smal_0829 isochorismatase hydrolase YP_004791395.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: smt:Smal_0830 LysR family transcriptional regulator YP_004791396.1 PFAM: Protein of unknown function DUF81; KEGG: smt:Smal_0831 hypothetical protein YP_004791397.1 PFAM: Flavin reductase-like, FMN-binding; KEGG: sml:Smlt0985 hypothetical protein YP_004791398.1 PFAM: Protein of unknown function DUF1112; KEGG: sml:Smlt0986 transmembrane protein YP_004791399.1 KEGG: sml:Smlt0987 hypothetical protein YP_004791400.1 TIGRFAM: Trigger factor; HAMAP: Trigger factor; KEGG: smt:Smal_0835 trigger factor; PFAM: Trigger factor, ribosome-binding, bacterial; Trigger factor, C-terminal, bacterial YP_004791401.1 PFAM: Peptidase S14, ClpP; TIGRFAM: Peptidase S14, ClpP; HAMAP: ATP-dependent Clp protease proteolytic subunit; KEGG: smt:Smal_0836 ATP-dependent Clp protease proteolytic subunit YP_004791402.1 SMART: ATPase, AAA+ type, core; TIGRFAM: Clp protease, ATP-binding subunit ClpX; KEGG: sml:Smlt0990 ATP-dependent protease ATP-binding subunit ClpX; HAMAP: Clp protease, ATP-binding subunit ClpX; PFAM: ATPase associated with various cellular activities, AAA-2; Zinc finger, C4-type; Clp ATPase, C-terminal YP_004791403.1 SMART: Peptidase S16, lon N-terminal; ATPase, AAA+ type, core; TIGRFAM: Peptidase S16, ATP-dependent protease La; KEGG: sml:Smlt0991 ATP-dependent protease; PFAM: Peptidase S16, lon C-terminal; Peptidase S16, lon N-terminal; ATPase, AAA-type, core YP_004791404.1 KEGG: smt:Smal_0839 histone family protein DNA-binding protein; PFAM: Histone-like bacterial DNA-binding protein; SMART: Histone-like bacterial DNA-binding protein YP_004791405.1 PFAM: Peptidyl-prolyl cis-trans isomerase, PpiC-type; KEGG: sml:Smlt0993 peptidyl-prolyl cis-trans isomerase YP_004791406.1 KEGG: smt:Smal_0841 lytic transglycosylase catalytic; PFAM: Lytic transglycosylase-like, catalytic; Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding Lysin subgroup YP_004791407.1 TIGRFAM: Hydroxyacylglutathione hydrolase; HAMAP: Hydroxyacylglutathione hydrolase; KEGG: sml:Smlt0995 glutathione hydrolase YP_004791408.1 KEGG: smt:Smal_0843 hypothetical protein YP_004791409.1 KEGG: sml:Smlt0997 ribonuclease H; HAMAP: Ribonuclease H; PFAM: Ribonuclease H YP_004791410.1 SMART: Exonuclease; TIGRFAM: DNA polymerase 3, epsilon subunit; DNA polymerase III, epsilon subunit; KEGG: sml:Smlt0998 DNA polymerase III subunit epsilon; PFAM: Exonuclease, RNase T/DNA polymerase III YP_004791411.1 KEGG: sml:Smlt0999 phosphatase; PFAM: Protein phosphatase 2C, N-terminal; Sporulation stage II, protein E C-terminal; SMART: Protein phosphatase 2C-related YP_004791412.1 TIGRFAM: 3-oxoacyl-[ACP] synthase 2; KEGG: rce:RC1_1569 beta-ketoacyl-ACP synthase II; PFAM: Beta-ketoacyl synthase, N-terminal; Beta-ketoacyl synthase, C-terminal YP_004791413.1 PFAM: Helix-turn-helix, HxlR type; KEGG: spe:Spro_1750 HxlR family transcriptional regulator YP_004791414.1 KEGG: smt:Smal_0848 hypothetical protein YP_004791415.1 KEGG: sml:Smlt1003 ADP-heptose--LPS heptosyltransferase II; manually curated; PFAM: Glycosyl transferase, family 9 YP_004791416.1 manually curated; HAMAP: 3-deoxy-D-manno-octulosonic acid kinase; KEGG: sml:Smlt1004 3-deoxy-D-manno-octulosonic-acid kinase; PFAM: Lipopolysaccharide kinase YP_004791417.1 KEGG: sml:Smlt1005 hypothetical protein YP_004791418.1 KEGG: sml:Smlt1006 hypothetical protein YP_004791419.1 PFAM: Small multidrug resistance protein; KEGG: sml:Smlt1007 multidrug resistance protein/chaperone YP_004791420.1 KEGG: smt:Smal_0854 outer membrane autotransporter barrel domain-containing protein; TIGRFAM: Outer membrane autotransporter barrel; Autotransporter-associated beta strand repeat; PFAM: Autotransporter beta-domain; Filamentous haemagglutinin, bacterial YP_004791421.1 KEGG: psu:Psesu_3076 hypothetical protein YP_004791422.1 PFAM: TadE-like; KEGG: psu:Psesu_3077 TadE family protein YP_004791423.1 PFAM: Protein of unknown function DUF192; KEGG: psu:Psesu_3078 protein of unknown function DUF192 YP_004791424.1 PFAM: Type II secretion system F domain; KEGG: psu:Psesu_3079 type II secretion system F domain YP_004791425.1 PFAM: Type II secretion system F domain; KEGG: psu:Psesu_3080 type II secretion system F domain YP_004791426.1 KEGG: psu:Psesu_3081 FHA domain containing protein; PFAM: Type II secretion system protein E; Forkhead-associated; SMART: Forkhead-associated YP_004791427.1 PFAM: Type II/III secretion system; KEGG: psu:Psesu_3082 type II and III secretion system protein YP_004791428.1 KEGG: psu:Psesu_3083 Flp pilus assembly protein CpaB; TIGRFAM: Pilus assembly, Flp-type CpaB; PFAM: SAF domain YP_004791430.1 KEGG: psu:Psesu_3085 hypothetical protein YP_004791431.1 KEGG: psu:Psesu_3086 hypothetical protein YP_004791432.1 KEGG: psu:Psesu_3087 hypothetical protein YP_004791433.1 KEGG: psu:Psesu_3088 hypothetical protein YP_004791434.1 KEGG: hna:Hneap_2319 hypothetical protein YP_004791435.1 PFAM: Outer membrane protein, OmpA/MotB, C-terminal; KEGG: aaa:Acav_0496 OmpA/MotB domain-containing protein YP_004791437.1 TIGRFAM: DNA polymerase III, subunit gamma/ tau; PFAM: ATPase, AAA-type, core; KEGG: sml:Smlt1014 DNA polymerase III subunits gamma and tau; SMART: ATPase, AAA+ type, core YP_004791438.1 TIGRFAM: Uncharacterised protein family UPF0133; HAMAP: Uncharacterised protein family UPF0133; KEGG: smt:Smal_0858 hypothetical protein; PFAM: Uncharacterised protein family UPF0133 YP_004791439.1 SMART: Toprim domain, subgroup; TIGRFAM: RecR protein; KEGG: sml:Smlt1016 recombination protein RecR; HAMAP: Recombination protein recR; PFAM: Toprim domain; Zinc finger C4-type, RecR YP_004791440.1 PFAM: Histidine triad (HIT) protein; KEGG: sml:Smlt1017 hypothetical protein YP_004791441.1 KEGG: sml:Smlt1018 outer membrane lipoprotein; TIGRFAM: Outer membrane lipoprotein Slp; PFAM: Outer membrane lipoprotein Slp YP_004791442.1 KEGG: smt:Smal_0862 transglutaminase domain-containing protein; PFAM: Transglutaminase-like; SMART: Transglutaminase-like YP_004791443.1 KEGG: sml:Smlt1020 transmembrane protein; manually curated; PFAM: Protein of unknown function DUF58 YP_004791444.1 KEGG: sml:Smlt1021 ATPase; PFAM: ATPase associated with various cellular activities, AAA-3; SMART: ATPase, AAA+ type, core YP_004791445.1 KEGG: smt:Smal_0865 hypothetical protein YP_004791446.1 TIGRFAM: Maf-like protein; HAMAP: Maf-like protein; KEGG: sml:Smlt1023 Maf-like protein; PFAM: Maf-like protein YP_004791447.1 KEGG: smt:Smal_0867 hypothetical protein; manually curated; PFAM: Protein of unknown function DUF177 YP_004791448.1 KEGG: sml:Smlt1025 50S ribosomal protein L32; TIGRFAM: Ribosomal protein L32p; PFAM: Ribosomal protein L32p YP_004791449.1 PFAM: 3-Oxoacyl-[ACP ACP] synthase III C-terminal; 3-Oxoacyl-[ACP ACP] synthase III; TIGRFAM: Beta-ketoacyl-ACP synthase III (FabH); HAMAP: Beta-ketoacyl-ACP synthase III (FabH); KEGG: sml:Smlt1026 3-oxoacyl-(ACP) synthase III YP_004791450.1 KEGG: smt:Smal_0870 Mn2+-dependent serine/threonine protein kinase YP_004791451.1 TIGRFAM: Malonyl CoA-ACP transacylase; KEGG: sml:Smlt1028 malonyl CoA-ACP transacylase; PFAM: Acyl transferase YP_004791452.1 KEGG: smt:Smal_0872 3-ketoacyl-ACP reductase; TIGRFAM: 3-oxoacyl-ACP reductase; PFAM: Short-chain dehydrogenase/reductase SDR YP_004791453.1 TIGRFAM: ACP ACP; HAMAP: ACP ACP; KEGG: sml:Smlt1030 ACP; PFAM: Phosphopantetheine-binding YP_004791454.1 TIGRFAM: 3-oxoacyl-[ACP] synthase 2; KEGG: sml:Smlt1031 3-oxoacyl-(ACP) synthase II; PFAM: Beta-ketoacyl synthase, N-terminal; Beta-ketoacyl synthase, C-terminal YP_004791455.1 TIGRFAM: Para-aminobenzoate synthase/anthranilate synthase, component I; KEGG: sml:Smlt1032 hypothetical protein; PFAM: Chorismate binding, C-terminal; Anthranilate synthase component I, N-terminal YP_004791456.1 KEGG: smt:Smal_0876 aminodeoxychorismate lyase; TIGRFAM: Uncharacterised protein family YceG-like; PFAM: Uncharacterised protein family YceG-like YP_004791457.1 PFAM: Thymidylate kinase-like; TIGRFAM: Thymidylate kinase; HAMAP: Thymidylate kinase; KEGG: smt:Smal_0877 dTMP kinase YP_004791458.1 KEGG: sml:Smlt1036 DNA polymerase III subunit delta' YP_004791459.1 PFAM: Type IV pilus assembly PilZ; KEGG: sml:Smlt1037 pilus biogenesis protein PilZ YP_004791460.1 KEGG: sml:Smlt0337 hypothetical protein YP_004791461.1 PFAM: 4-oxalocrotonate tautomerase; KEGG: smt:Smal_0880 4-oxalocrotonate tautomerase YP_004791462.1 KEGG: smt:Smal_0906 hypothetical protein YP_004791463.1 KEGG: smt:Smal_0907 TonB-dependent siderophore receptor; TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel YP_004791464.1 PFAM: PepSY-associated TM helix; KEGG: smt:Smal_0908 PepSY-associated TM helix domain-containing protein YP_004791465.1 KEGG: cai:Caci_4099 glycoside hydrolase family 3 domain protein; PFAM: Ricin B lectin; SMART: Ricin B lectin YP_004791466.1 PFAM: Major facilitator superfamily MFS-1; KEGG: smt:Smal_0909 major facilitator superfamily protein YP_004791467.1 KEGG: sml:Smlt1070 DeoR family transcriptional regulator; PFAM: HTH transcriptional regulator, DeoR; HTH transcriptional regulator, DeoR N-terminal; SMART: HTH transcriptional regulator, DeoR N-terminal YP_004791468.1 PFAM: Pentapeptide repeat; KEGG: sml:Smlt1071 fluoroquinolone resistance protein YP_004791469.1 PFAM: Methyltransferase type 12; KEGG: sml:Smlt1072 methyltransferase YP_004791470.1 KEGG: smt:Smal_0913 GntR family transcriptional regulator with aminotransferase domain; PFAM: Aminotransferase, class I/II; HTH transcriptional regulator, GntR; SMART: HTH transcriptional regulator, GntR YP_004791471.1 PFAM: Protein of unknown function DUF6, transmembrane; KEGG: sml:Smlt1076 transmembrane protein YP_004791472.1 PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: ilo:IL1608 short chain dehydrogenase/reductase family protein YP_004791473.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: ilo:IL1609 LysR family transcriptional regulator YP_004791474.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: sml:Smlt1077 LysR family regulatory protein YP_004791475.1 PFAM: Major facilitator superfamily MFS-1; KEGG: smt:Smal_0916 major facilitator superfamily protein YP_004791476.1 KEGG: smt:Smal_0917 TonB-dependent siderophore receptor; TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel YP_004791477.1 PFAM: Glutathione-dependent formaldehyde-activating, GFA; KEGG: smt:Smal_0922 glutathione-dependent formaldehyde-activating protein YP_004791478.1 KEGG: sml:Smlt1081 transmembrane protein YP_004791479.1 KEGG: sml:Smlt1082 hypothetical protein YP_004791480.1 PFAM: Major facilitator superfamily MFS-1; KEGG: sml:Smlt1083 major facilitator superfamily transmembrane transporter protein YP_004791481.1 TIGRFAM: Redox-sensitive transcriptional activator SoxR; PFAM: Transcription regulator MerR, DNA binding; HTH transcriptional regulator, MerR; KEGG: smt:Smal_0926 MerR family transcriptional regulator; SMART: HTH transcriptional regulator, MerR YP_004791482.1 PFAM: dTDP-4-dehydrorhamnose reductase; KEGG: smt:Smal_0927 short chain dehydrogenase YP_004791483.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: sml:Smlt1086 LysR family transcriptional regulator YP_004791484.1 TIGRFAM: Delta 1-pyrroline-5-carboxylate reductase; KEGG: smt:Smal_0929 pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase, coenzyme F420-dependent YP_004791485.1 KEGG: sml:Smlt1088 hypothetical protein; TIGRFAM: pyridoxal phosphate-dependent enzyme, YBL036C type; PFAM: Alanine racemase, N-terminal YP_004791486.1 TIGRFAM: Pilus retraction protein PilT; PFAM: Type II secretion system protein E; KEGG: smt:Smal_0931 twitching motility protein; SMART: ATPase, AAA+ type, core YP_004791487.1 KEGG: smt:Smal_0932 twitching motility protein; TIGRFAM: Pilus retraction protein PilT; PFAM: Type II secretion system protein E YP_004791489.1 KEGG: sml:Smlt1091 aldo/keto reductase; PFAM: Aldo/keto reductase YP_004791490.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: smt:Smal_0934 LysR family transcriptional regulator YP_004791491.1 KEGG: smt:Smal_0935 hypothetical protein YP_004791492.1 PFAM: GCN5-related N-acetyltransferase; KEGG: smt:Smal_0936 GCN5-related N-acetyltransferase YP_004791493.1 PFAM: Protein of unknown function DUF161; KEGG: sml:Smlt1095 transmembrane YitT family protein YP_004791494.1 PFAM: Methyladenine glycosylase; KEGG: smt:Smal_0938 methyladenine glycosylase YP_004791495.1 KEGG: smt:Smal_0939 hypothetical protein YP_004791496.1 HAMAP: Protein of unknown function DUF179; PFAM: Protein of unknown function DUF179; KEGG: sml:Smlt1098 hypothetical protein YP_004791497.1 SMART: Resolvase, RNase H-like fold; TIGRFAM: Resolvase, holliday junction-type, YqgF-like; KEGG: smt:Smal_0941 Holliday junction resolvase-like protein; HAMAP: Holliday junction resolvase; PFAM: Resolvase, holliday junction-type, YqgF-like YP_004791498.1 PFAM: Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding; Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding region; TIGRFAM: Aspartate carbamoyltransferase, eukaryotic; HAMAP: Aspartate carbamoyltransferase; KEGG: sml:Smlt1100 aspartate carbamoyltransferase catalytic subunit YP_004791499.1 KEGG: smt:Smal_0943 hypothetical protein YP_004791500.1 KEGG: smt:Smal_0944 hypothetical protein YP_004791501.1 KEGG: smt:Smal_0945 hypothetical protein YP_004791502.1 TIGRFAM: Divalent cation transporter; PFAM: Magnesium transporter, MgtE intracellular region; Cystathionine beta-synthase, core; MgtE integral membrane region; KEGG: sml:Smlt1103 MgtE/divalent cation transmembrane transporter protein; SMART: Cystathionine beta-synthase, core YP_004791503.1 TIGRFAM: Phosphoenolpyruvate-protein phosphotransferase; KEGG: smt:Smal_0947 phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilising enzyme; Phosphotransferase system, PEP-utilising enzyme, N-terminal; PEP-utilising enzyme, mobile region YP_004791504.1 KEGG: sml:Smlt1105 phosphocarrier protein HPr; TIGRFAM: Phosphotransferase system, phosphocarrier HPr protein; PFAM: Phosphotransferase system, phosphocarrier HPr protein YP_004791505.1 PFAM: Phosphotransferase system, fructose subfamily IIA component; KEGG: sml:Smlt1106 IIa component of sugar transport PTS system YP_004791506.1 HAMAP: ATPase, P-loop-containing; KEGG: sml:Smlt1108 hypothetical protein YP_004791507.1 PFAM: Signal transduction serine kinase/phosphorylase, HPr(Ser) kinase, C-terminal; Signal transduction serine kinase/phosphorylase, HPr(Ser) kinase, N-terminal; KEGG: sml:Smlt1109 HPr kinase/phosphorylase YP_004791508.1 PFAM: Phosphotransferase system, phosphoenolpyruvate-dependent sugar EIIA 2; KEGG: sml:Smlt1110 nitrogen regulatory IIA protein YP_004791509.1 KEGG: smt:Smal_0953 sigma 54 modulation protein/ribosomal protein S30EA; TIGRFAM: Ribosomal protein S30Ae/sigma 54 modulation protein; PFAM: Ribosomal protein S30Ae/sigma 54 modulation protein YP_004791510.1 KEGG: sml:Smlt1112 RNA polymerase factor sigma-54; TIGRFAM: RNA polymerase sigma factor 54; PFAM: RNA polymerase sigma factor 54, DNA-binding; RNA polymerase sigma factor 54, core-binding; RNA polymerase sigma factor 54 YP_004791511.1 PFAM: ABC transporter-like; KEGG: sml:Smlt1113 ABC transporter ATP-binding protein; SMART: ATPase, AAA+ type, core YP_004791512.1 KEGG: smt:Smal_0956 lipopolysaccharide transport periplasmic protein LptA; TIGRFAM: Cell envelope biogenesis YhbN; PFAM: OstA-like protein YP_004791513.1 PFAM: Protein of unknown function DUF1239; KEGG: sml:Smlt1115 hypothetical protein YP_004791514.1 KEGG: smt:Smal_0958 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; TIGRFAM: Phosphatase KdsC YP_004791515.1 SMART: Cystathionine beta-synthase, core; TIGRFAM: KpsF/GutQ; KEGG: smt:Smal_0959 KpsF/GutQ family protein; PFAM: Sugar isomerase (SIS); Cystathionine beta-synthase, core YP_004791516.1 PFAM: BolA-like protein; KEGG: sml:Smlt1118 BolA-like protein YP_004791517.1 PFAM: 3-phosphoshikimate 1-carboxyvinyltransferase, core; TIGRFAM: UDP-N-acetylglucosamine 1-carboxyvinyltransferase; HAMAP: UDP-N-acetylglucosamine 1-carboxyvinyltransferase; KEGG: smt:Smal_0961 UDP-N-acetylglucosamine 1-carboxyvinyltransferase YP_004791518.1 KEGG: smt:Smal_0962 hypothetical protein YP_004791519.1 KEGG: sml:Smlt1121 hypothetical protein YP_004791520.1 KEGG: smt:Smal_0964 hypothetical protein YP_004791521.1 TIGRFAM: Phosphoribosylglycinamide formyltransferase; KEGG: smt:Smal_0965 phosphoribosylglycinamide formyltransferase; PFAM: Formyl transferase, N-terminal YP_004791522.1 PFAM: Uncharacterised conserved protein UCP020606; KEGG: sml:Smlt1124 transmembrane protein YP_004791523.1 KEGG: smt:Smal_0967 hypothetical protein YP_004791524.1 KEGG: smt:Smal_0968 hypothetical protein YP_004791525.1 TIGRFAM: Phosphoribosylformylglycinamidine cyclo-ligase; KEGG: sml:Smlt1126 phosphoribosylaminoimidazole synthetase; PFAM: AIR synthase related protein, C-terminal; AIR synthase related protein YP_004791526.1 PFAM: Protein of unknown function DUF2066; KEGG: sml:Smlt1127 hypothetical protein YP_004791527.1 PFAM: Uncharacterised protein family UPF0118; KEGG: smt:Smal_0971 hypothetical protein YP_004791528.1 KEGG: smt:Smal_0972 hypothetical protein; TIGRFAM: Chromosomal replication control, regulator Hda; PFAM: Chromosomal replication control, initiator (DnaA)/regulator (Hda) YP_004791529.1 PFAM: Nucleotidyl transferase; KEGG: smt:Smal_0975 nucleotidyl transferase YP_004791530.1 PFAM: Aminoglycoside phosphotransferase; KEGG: sml:Smlt1131 hypothetical protein YP_004791531.1 KEGG: sml:Smlt1132 transmembrane protein YP_004791532.1 PFAM: Peptidase M20; Peptidase M20, dimerisation; KEGG: smt:Smal_0978 peptidase M20 YP_004791533.1 TIGRFAM: Competence protein ComEA, helix-hairpin-helix region; KEGG: sml:Smlt1134 DNA transport competence protein YP_004791534.1 PFAM: YkuD domain; KEGG: smt:Smal_0980 hypothetical protein YP_004791535.1 KEGG: smt:Smal_0981 hypothetical protein YP_004791536.1 PFAM: HutD; KEGG: sml:Smlt1137 hypothetical protein YP_004791537.1 PFAM: Flavodoxin/nitric oxide synthase; Oxidoreductase FAD/NAD(P)-binding; KEGG: smt:Smal_0983 flavodoxin/nitric oxide synthase YP_004791538.1 PFAM: ApbE-like lipoprotein; KEGG: smt:Smal_0984 ApbE family lipoprotein YP_004791539.1 PFAM: Nickel transport complex, NikM subunit, transmembrane; KEGG: sml:Smlt1140 hypothetical protein YP_004791540.1 PFAM: Uncharacterised conserved protein UCP014995; KEGG: smt:Smal_0986 hypothetical protein YP_004791541.1 PFAM: PepSY-associated TM helix; KEGG: sml:Smlt1142 transmembrane PepSY family protein YP_004791542.1 PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; KEGG: sml:Smlt1144c exogenous ferric siderophore receptor YP_004791543.1 KEGG: sml:Smlt1145 transmembrane protein YP_004791544.1 HAMAP: PKHD-type hydroxylase ybiX; PFAM: Oxoglutarate/iron-dependent oxygenase; KEGG: smt:Smal_0990 2OG-Fe(II) oxygenase; SMART: Prolyl 4-hydroxylase, alpha subunit YP_004791545.1 KEGG: sml:Smlt1147 hypothetical protein; PFAM: Sel1-like; SMART: Sel1-like YP_004791546.1 KEGG: smt:Smal_0992 TonB-dependent siderophore receptor; TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug YP_004791547.1 KEGG: sml:Smlt1149 hypothetical protein YP_004791548.1 PFAM: Rieske [2Fe-2S] iron-sulphur domain; KEGG: smt:Smal_0994 Rieske (2Fe-2S) domain-containing protein YP_004791549.1 PFAM: GCN5-related N-acetyltransferase; KEGG: sml:Smlt1151 acetyltransferase YP_004791550.1 KEGG: smt:Smal_0996 hypothetical protein YP_004791551.1 TIGRFAM: Cysteine desulfurase, SufS; KEGG: sml:Smlt1153 aminotransferase; PFAM: Aminotransferase, class V/Cysteine desulfurase YP_004791552.1 KEGG: sml:Smlt1154 hypothetical protein; TIGRFAM: SUF system FeS cluster assembly, SufD; PFAM: SUF system FeS cluster assembly, SufBD YP_004791553.1 TIGRFAM: ATPase SufC, SUF system FeS cluster assembly; PFAM: ABC transporter-like; KEGG: sml:Smlt1155 ABC transporter ATP-binding protein; SMART: ATPase, AAA+ type, core YP_004791554.1 KEGG: sml:Smlt1157 cysteine desulfurase activator complex subunit SufB; TIGRFAM: SUF system FeS cluster assembly, SufB; PFAM: SUF system FeS cluster assembly, SufBD YP_004791555.1 KEGG: sml:Smlt1158 transcriptional regulator; TIGRFAM: SUF system FeS cluster assembly, Rtf2-type regulator; Transcriptional regulator, Rrf2; PFAM: Transcriptional regulator, Rrf2 YP_004791556.1 KEGG: sml:Smlt1159 hypothetical protein; PFAM: SET; SMART: SET; Post-SET zinc-binding region YP_004791557.1 KEGG: sml:Smlt1160 protease; TIGRFAM: Peptidase C56, PfpI; PFAM: ThiJ/PfpI YP_004791558.1 KEGG: sml:Smlt1161 hypothetical protein YP_004791559.1 KEGG: sml:Smlt1162 hypothetical protein YP_004791560.1 KEGG: sml:Smlt1163 hypothetical protein YP_004791561.1 KEGG: sml:Smlt1164 histone-like protein; PFAM: Histone-like bacterial DNA-binding protein; SMART: Histone-like bacterial DNA-binding protein YP_004791562.1 TIGRFAM: Peroxiredoxin, osmotically inducible protein C, subgroup; KEGG: smt:Smal_1008 OsmC family protein; PFAM: Peroxiredoxin, OsmC-like protein YP_004791563.1 KEGG: sml:Smlt1166 phenazine antibiotic biosynthesis protein; TIGRFAM: Phenazine biosynthesis PhzC/PhzF protein; PFAM: Phenazine biosynthesis PhzC/PhzF protein YP_004791564.1 KEGG: sml:Smlt1167 phenazine biosynthesis-like protein; TIGRFAM: Phenazine biosynthesis PhzC/PhzF protein; PFAM: Phenazine biosynthesis PhzC/PhzF protein YP_004791565.1 TIGRFAM: Diaminopimelate decarboxylase; Aspartate kinase region; KEGG: sml:Smlt1168 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; PFAM: Orn/DAP/Arg decarboxylase 2; Aspartate/glutamate/uridylate kinase YP_004791566.1 KEGG: smt:Smal_1012 hypothetical protein YP_004791567.1 PFAM: Mur ligase, central; Mur ligase, C-terminal; TIGRFAM: UDP-N-acetylmuramoylalanine-D-glutamate ligase; HAMAP: UDP-N-acetylmuramoylalanine-D-glutamate ligase; KEGG: sml:Smlt1170 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase YP_004791568.1 KEGG: hba:Hbal_3069 hypothetical protein YP_004791569.1 PFAM: Cell wall assembly/cell proliferation coordinating protein, KNR4-like; KEGG: smt:Smal_1014 hypothetical protein YP_004791570.1 KEGG: pfs:PFLU4251 hypothetical protein YP_004791571.1 PFAM: Dienelactone hydrolase; KEGG: smt:Smal_1015 dienelactone hydrolase YP_004791572.1 KEGG: sml:Smlt1173 octaprenyl-diphosphate synthase; PFAM: Polyprenyl synthetase YP_004791573.1 KEGG: smt:Smal_1017 alpha amylase catalytic region; PFAM: Glycosyl hydrolase, family 13, catalytic region; SMART: Glycosyl hydrolase, family 13, subfamily, catalytic region YP_004791574.1 KEGG: smt:Smal_1018 outer membrane insertion C-terminal signal; TIGRFAM: Bacterial TonB-dependent receptor; Outer membrane insertion C-terminal signal, omp85; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel YP_004791575.1 PFAM: Glycoside hydrolase 97; KEGG: sml:Smlt1176 alpha-glucosidase protein YP_004791576.1 KEGG: sml:Smlt1177 hypothetical protein YP_004791577.1 PFAM: Major facilitator superfamily MFS-1; KEGG: sml:Smlt1178 major facilitator superfamily transmembrane protein YP_004791578.1 PFAM: Glycosyl hydrolase, family 13, catalytic region; KEGG: smt:Smal_1022 alpha amylase catalytic region; SMART: Glycosyl hydrolase, family 13, subfamily, catalytic region YP_004791579.1 KEGG: smt:Smal_1023 hypothetical protein YP_004791580.1 KEGG: smt:Smal_1027 hypothetical protein YP_004791581.1 KEGG: smt:Smal_1028 hypothetical protein YP_004791582.1 PFAM: ABC transporter-like; KEGG: smt:Smal_1029 ABC transporter-like protein; SMART: ATPase, AAA+ type, core YP_004791583.1 KEGG: sml:Smlt1186 LacI family regulatory protein; PFAM: Periplasmic binding protein/LacI transcriptional regulator; HTH transcriptional regulator, LacI; SMART: HTH transcriptional regulator, LacI YP_004791584.1 KEGG: sml:Smlt1187 single-stranded DNA-binding protein; TIGRFAM: Single-strand DNA-binding; PFAM: Primosome PriB/single-strand DNA-binding YP_004791585.1 KEGG: xom:XOO_2165 RhsD protein; TIGRFAM: RHS repeat-associated core domain-containing protein; YD repeat; PFAM: YD repeat YP_004791587.1 manually curated; KEGG: ecl:EcolC_0116 hypothetical protein YP_004791588.1 PFAM: Xylose isomerase, TIM barrel domain; KEGG: sml:Smlt1188 xylose isomerase YP_004791589.1 PFAM: Glucose-methanol-choline oxidoreductase, N-terminal; FAD dependent oxidoreductase; KEGG: smt:Smal_1042 glucose-methanol-choline oxidoreductase YP_004791590.1 KEGG: smt:Smal_1043 twin-arginine translocation pathway signal YP_004791591.1 PFAM: Protein of unknown function DUF1080; KEGG: smt:Smal_1044 hypothetical protein YP_004791592.1 PFAM: Xylose isomerase, TIM barrel domain; KEGG: smt:Smal_1046 xylose isomerase domain-containing protein YP_004791593.1 PFAM: Oxidoreductase, N-terminal; Oxidoreductase, C-terminal; KEGG: sml:Smlt1194 oxidoreductase YP_004791594.1 PFAM: Nucleoside:H+ symporter; KEGG: sml:Smlt1195 nucleoside H+ symport transporter permease YP_004791595.1 PFAM: Xylose isomerase, TIM barrel domain; AP endonuclease, family 2, C-terminal; KEGG: sml:Smlt1196 xylose isomerase/endonuclease family protein YP_004791596.1 KEGG: sml:Smlt1197 transcriptional regulator; PFAM: Periplasmic binding protein/LacI transcriptional regulator; HTH transcriptional regulator, LacI; SMART: HTH transcriptional regulator, LacI YP_004791597.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate cyclase, predicted; MASE2; KEGG: sml:Smlt1198 transmembrane GGDEF domain signalling protein; SMART: Diguanylate cyclase, predicted YP_004791598.1 KEGG: smt:Smal_1055 hypothetical protein YP_004791599.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate cyclase, predicted; KEGG: sml:Smlt1200 transmembrane GGDEF signalling regulatory protein; SMART: Diguanylate cyclase, predicted YP_004791600.1 KEGG: smt:Smal_1057 hypothetical protein YP_004791601.1 KEGG: smt:Smal_1058 hypothetical protein YP_004791602.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: smt:Smal_1059 LysR family transcriptional regulator YP_004791603.1 KEGG: smt:Smal_1060 hypothetical protein YP_004791604.1 KEGG: sml:Smlt1204 hypothetical protein YP_004791605.1 KEGG: smt:Smal_1062 ArsR family transcriptional regulator; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR YP_004791606.1 KEGG: sml:Smlt1206 hypothetical protein YP_004791607.1 KEGG: sml:Smlt1207 transmembrane protein YP_004791608.1 KEGG: sml:Smlt1208 DNA-binding protein; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3 YP_004791609.1 PFAM: Integral membrane protein TerC; Cystathionine beta-synthase, core; Transporter-associated region; KEGG: sml:Smlt1209 transmembrane transporter domain-containing protein YP_004791610.1 PFAM: Metallophosphoesterase; KEGG: sml:Smlt1210 transmembrane phosphoesterase YP_004791611.1 KEGG: smt:Smal_1068 hypothetical protein YP_004791612.1 KEGG: smt:Smal_1069 hypothetical protein YP_004791613.1 PFAM: Major facilitator superfamily MFS-1; KEGG: smt:Smal_1070 major facilitator superfamily protein YP_004791614.1 PFAM: Inosine/uridine-preferring nucleoside hydrolase; KEGG: sml:Smlt1222 inosine-uridine preferring nucleoside hydrolase YP_004791615.1 KEGG: smt:Smal_1072 hypothetical protein YP_004791616.1 KEGG: smt:Smal_1073 GntR family transcriptional regulator; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: GntR, C-terminal; HTH transcriptional regulator, GntR YP_004791617.1 PFAM: Dicarboxylate carrier MatC N-terminal; KEGG: sml:Smlt1225 transmembrane dicarboxylate carrier protein YP_004791618.1 TIGRFAM: Malonate decarboxylase, epsilon subunit; KEGG: smt:Smal_1075 malonate decarboxylase subunit epsilon YP_004791619.1 TIGRFAM: Triphosphoribosyl-dephospho-CoA synthas, MdcB; KEGG: smt:Smal_1076 triphosphoribosyl-dephospho-CoA synthase MdcB; PFAM: Triphosphoribosyl-dephospho-CoA protein YP_004791620.1 KEGG: smt:Smal_1077 phosphoribosyl-dephospho-CoA transferase; TIGRFAM: Holo-ACP synthase, malonate decarboxylase-specific; PFAM: Holo-ACP synthase, malonate decarboxylase-specific YP_004791621.1 KEGG: smt:Smal_1078 malonate decarboxylase subunit gamma; TIGRFAM: Malonate decarboxylase gamma subunit; PFAM: Malonate decarboxylase gamma subunit YP_004791622.1 TIGRFAM: Malonate decarboxylase, beta subunit; KEGG: smt:Smal_1079 malonate decarboxylase subunit beta YP_004791623.1 TIGRFAM: Malonate decarboxylase delta subunit; HAMAP: Malonate decarboxylase ACP; KEGG: sml:Smlt1231 malonate decarboxylase subunit delta; PFAM: Malonate decarboxylase delta subunit YP_004791624.1 TIGRFAM: Malonate decarboxylase, alpha subunit; KEGG: smt:Smal_1081 malonate decarboxylase subunit alpha YP_004791625.1 KEGG: smt:Smal_1082 TonB-dependent siderophore receptor; TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug YP_004791626.1 PFAM: Malate:quinone-oxidoreductase; TIGRFAM: Malate:quinone-oxidoreductase; KEGG: smt:Smal_1083 malate:quinone oxidoreductase; HAMAP: Malate:quinone-oxidoreductase YP_004791627.1 PFAM: GCN5-related N-acetyltransferase; KEGG: sml:Smlt1235 acetyltransferase YP_004791628.1 KEGG: sml:Smlt1237 chromosome replication initiation inhibitor protein; TIGRFAM: Transcriptional regulator, ArgP; PFAM: HTH transcriptional regulator, LysR; LysR, substrate-binding YP_004791629.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: smt:Smal_1086 lysine exporter protein LysE/YggA YP_004791630.1 KEGG: smt:Smal_1087 peptidase S9 prolyl oligopeptidase active site domain-containing protein YP_004791631.1 KEGG: sml:Smlt1241 major facilitator superfamily transmembrane transporter; TIGRFAM: Amino acid/peptide transporter; PFAM: Oligopeptide transporter YP_004791632.1 KEGG: smt:Smal_1089 hypothetical protein YP_004791633.1 KEGG: smt:Smal_1090 oligopeptide transporter, OPT family; TIGRFAM: Oligopeptide transporter OPT; Oligopeptide transporter OPT superfamily; PFAM: Oligopeptide transporter OPT superfamily YP_004791634.1 KEGG: sml:Smlt1246 exported peptidase YP_004791635.1 PFAM: Protein of unknown function DUF819; KEGG: smt:Smal_1092 hypothetical protein YP_004791636.1 KEGG: sml:Smlt1249 hypothetical protein YP_004791637.1 TIGRFAM: Septum formation topological specificity factor MinE; HAMAP: Septum formation topological specificity factor MinE; KEGG: sml:Smlt1250 cell division topological specificity factor MinE; PFAM: Septum formation topological specificity factor MinE YP_004791638.1 KEGG: smt:Smal_1095 septum site-determining protein MinD; TIGRFAM: Septum site-determining protein MinD; PFAM: Cobyrinic acid a,c-diamide synthase YP_004791639.1 TIGRFAM: Septum formation inhibitor MinC; HAMAP: Septum formation inhibitor MinC; KEGG: smt:Smal_1096 septum formation inhibitor; PFAM: Septum formation inhibitor MinC, C-terminal; Septum formation inhibitor MinC, N-terminal YP_004791640.1 PFAM: GCN5-related N-acetyltransferase; KEGG: smt:Smal_1097 GCN5-related N-acetyltransferase YP_004791641.1 PFAM: Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor region; ATP-binding region, ATPase-like; KEGG: sml:Smlt1254 two-component system sensor histidine kinase YP_004791642.1 KEGG: sml:Smlt1255 two-component response regulator transcriptional regulator; PFAM: Signal transduction response regulator, receiver region; Transcription regulator LuxR, C-terminal; SMART: Signal transduction response regulator, receiver region; Transcription regulator LuxR, C-terminal YP_004791643.1 PFAM: Polyketide cyclase/dehydrase; KEGG: sml:Smlt1256 hypothetical protein YP_004791644.1 PFAM: Protein of unknown function DUF423; KEGG: smt:Smal_1101 hypothetical protein YP_004791645.1 PFAM: Peptidase M15B/M15C, D,D-carboxypeptidase VanY/endolysins; KEGG: smt:Smal_1102 peptidase M15B and M15C dd-carboxypeptidase VanY/endolysin YP_004791646.1 KEGG: smt:Smal_1103 hypothetical protein YP_004791647.1 KEGG: sml:Smlt1261 hypothetical protein YP_004791648.1 KEGG: sml:Smlt1262 hypothetical protein YP_004791649.1 KEGG: sml:Smlt1263 transmembrane protein; PFAM: Band 7 protein; SMART: Band 7 protein YP_004791650.1 PFAM: ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type; TIGRFAM: Phosphoribosylglycinamide formyltransferase 2; HAMAP: Phosphoribosylglycinamide formyltransferase 2; KEGG: sml:Smlt1264 phosphoribosylglycinamide formyltransferase 2 YP_004791651.1 PFAM: Endonuclease/exonuclease/phosphatase; KEGG: sml:Smlt1265 exported endonuclease/exonuclease/phosphatase family protein YP_004791652.1 KEGG: smt:Smal_1109 arginyl-tRNA-protein transferase; HAMAP: Arginine-tRNA-protein transferase, predicted, prokaryotic; PFAM: Arginine-tRNA-protein transferase, C-terminal; Arginine-tRNA-protein transferase, N-terminal YP_004791653.1 KEGG: sml:Smlt1268 calcium-binding protein YP_004791654.1 KEGG: smt:Smal_1111 ECF subfamily RNA polymerase sigma-24 subunit; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2 YP_004791655.1 KEGG: sml:Smlt1270 hypothetical protein YP_004791656.1 TIGRFAM: Acyl-CoA thioesterase; KEGG: smt:Smal_1113 acyl-CoA thioesterase II; PFAM: Acyl-CoA thioesterase YP_004791657.1 PFAM: Crotonase, core; KEGG: smt:Smal_1114 enoyl-CoA hydratase/isomerase YP_004791658.1 PFAM: DR1885-like metal-binding protein; KEGG: smt:Smal_1115 hypothetical protein YP_004791659.1 KEGG: sml:Smlt1275 hypothetical protein YP_004791660.1 PFAM: Thioesterase superfamily; KEGG: sml:Smlt1276 thioesterase YP_004791661.1 TIGRFAM: Excinuclease ABC, A subunit; HAMAP: UvrABC system protein A; KEGG: sml:Smlt1277 excinuclease ABC subunit A; PFAM: ABC transporter-like YP_004791662.1 KEGG: sml:Smlt1278 50S ribosomal protein L21; TIGRFAM: Ribosomal protein L21; PFAM: Ribosomal protein L21 YP_004791663.1 KEGG: sml:Smlt1279 50S ribosomal protein L27; TIGRFAM: Ribosomal protein L27; PFAM: Ribosomal protein L27 YP_004791664.1 TIGRFAM: GTP-binding protein Obg/CgtA; HAMAP: GTPase obg; KEGG: sml:Smlt1280 GTPase ObgE; PFAM: GTP1/OBG subdomain; GTP-binding protein, HSR1-related YP_004791665.1 TIGRFAM: Ribosomal protein S20; HAMAP: Ribosomal protein S20; KEGG: sml:Smlt1337 30S ribosomal protein S20; PFAM: Ribosomal protein S20 YP_004791666.1 KEGG: sml:Smlt1338 transmembrane virulence factor MmviN; TIGRFAM: Flagellin assembly, membrane protein MviN; PFAM: Flagellin assembly, membrane protein MviN YP_004791667.1 TIGRFAM: Riboflavin kinase/FAD synthetase; KEGG: sml:Smlt1339 bifunctional riboflavin kinase/FMN adenylyltransferase; PFAM: FAD synthetase; Riboflavin kinase YP_004791668.1 TIGRFAM: Isoleucyl-tRNA synthetase, class Ia; HAMAP: Isoleucyl-tRNA synthetase; KEGG: sml:Smlt1340 isoleucyl-tRNA synthetase YP_004791669.1 PFAM: Peptidase A8, signal peptidase II; TIGRFAM: Peptidase A8, signal peptidase II; HAMAP: Peptidase A8, signal peptidase II; KEGG: sml:Smlt1341 lipoprotein signal peptidase YP_004791670.1 PFAM: LytB protein; TIGRFAM: LytB protein; HAMAP: LytB protein; KEGG: sml:Smlt1342 4-hydroxy-3-methylbut-2-enyl diphosphate reductase YP_004791671.1 PFAM: Peptidase M61; KEGG: sml:Smlt1343 hypothetical protein YP_004791672.1 PFAM: YhhN-like; KEGG: smt:Smal_1129 YhhN family protein YP_004791673.1 KEGG: sml:Smlt1345 hypothetical protein YP_004791674.1 KEGG: smt:Smal_1131 hypothetical protein YP_004791675.1 PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; KEGG: sml:Smlt1347 TonB dependent receptor protein YP_004791676.1 PFAM: FecR protein; KEGG: sml:Smlt1348 transmembrane protein YP_004791677.1 manually curated; TIGRFAM: RNA polymerase sigma-70; KEGG: sml:Smlt1349 RNA polymerase sigma factor; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2 YP_004791678.1 KEGG: sml:Smlt1350 outer membrane autotransporter; TIGRFAM: Outer membrane autotransporter barrel; PFAM: Autotransporter beta-domain YP_004791679.1 KEGG: sml:Smlt1351 D-lactate dehydrogenase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region YP_004791680.1 KEGG: smt:Smal_1137 hypothetical protein YP_004791681.1 KEGG: smt:Smal_1138 hypothetical protein YP_004791682.1 PFAM: Protein of unknown function DUF2174, N-terminal; KEGG: sml:Smlt1359 hypothetical protein YP_004791683.1 KEGG: sml:Smlt1360 transmembrane ubiquinol oxidase subunit 2; TIGRFAM: Cytochrome o ubiquinol oxidase subunit II; PFAM: COX aromatic rich; Cytochrome c oxidase subunit II C-terminal YP_004791684.1 TIGRFAM: Cytochrome o ubiquinol oxidase, subunit I; KEGG: sml:Smlt1361 quinol oxidase subunit 1; PFAM: Cytochrome c oxidase, subunit I YP_004791685.1 KEGG: sml:Smlt1362 quinol oxidase subunit 3; TIGRFAM: Cytochrome o ubiquinol oxidase, subunit III; PFAM: Cytochrome c oxidase, subunit III YP_004791686.1 KEGG: smt:Smal_1143 cytochrome o ubiquinol oxidase subunit IV; TIGRFAM: Cytochrome o ubiquinol oxidase subunit IV; PFAM: Cytochrome C oxidase subunit IV prokaryotic YP_004791687.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; MHYT; KEGG: smt:Smal_1144 diguanylate cyclase/phosphodiesterase; SMART: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted YP_004791688.1 KEGG: sml:Smlt1366 DNA repair protein RadA; TIGRFAM: DNA repair protein RadA; SMART: ATPase, AAA+ type, core YP_004791689.1 PFAM: ATP-binding region, ATPase-like; KEGG: sml:Smlt1367 chaperone protein HtpG YP_004791690.1 KEGG: smt:Smal_1147 hypothetical protein YP_004791691.1 KEGG: smt:Smal_1148 hypothetical protein YP_004791692.1 PFAM: Cytochrome c assembly protein; KEGG: sml:Smlt1370 transmembrane protein YP_004791693.1 TIGRFAM: Signal recognition particle, SRP; PFAM: Signal recognition particle, SRP54 subunit, GTPase; Signal recognition particle, SRP54 subunit, helical bundle; Signal recognition particle, SRP54 subunit, M-domain; KEGG: sml:Smlt1371 signal recognition protein (signal recognition particle-like); SMART: ATPase, AAA+ type, core YP_004791694.1 KEGG: sml:Smlt1372 2-nitropropane dioxygenase; manually curated; PFAM: 2-nitropropane dioxygenase, NPD YP_004791695.1 PFAM: Aminotransferase, class IV; KEGG: sml:Smlt1373 hypothetical protein YP_004791696.1 KEGG: psp:PSPPH_2283 hypothetical protein YP_004791697.1 KEGG: sml:Smlt1374 30S ribosomal protein S16; TIGRFAM: Ribosomal protein S16; PFAM: Ribosomal protein S16 YP_004791698.1 TIGRFAM: 16S rRNA processing protein RimM; HAMAP: 16S rRNA processing protein RimM; KEGG: sml:Smlt1375 16S rRNA-processing protein RimM; PFAM: RimM protein; PRC-barrel YP_004791699.1 PFAM: tRNA (guanine-N1-)-methyltransferase; TIGRFAM: tRNA (guanine-N1-)-methyltransferase, bacteria; HAMAP: tRNA (guanine-N1-)-methyltransferase, bacteria; KEGG: smt:Smal_1155 tRNA (guanine-N(1)-)-methyltransferase YP_004791700.1 TIGRFAM: Ribosomal protein L19; HAMAP: Ribosomal protein L19; KEGG: sml:Smlt1377 50S ribosomal protein L19; PFAM: Ribosomal protein L19 YP_004791701.1 KEGG: sml:Smlt1378 transmembrane protein YP_004791702.1 PFAM: Protein of unknown function DUF1801; KEGG: sml:Smlt1379 hypothetical protein YP_004791703.1 PFAM: Protein of unknown function DUF1801; KEGG: sml:Smlt1380 hypothetical protein YP_004791704.1 KEGG: sml:Smlt1381 transmembrane MatE family antimicrobial drug efflux protein; TIGRFAM: Multi antimicrobial extrusion protein MatE; PFAM: Multi antimicrobial extrusion protein MatE YP_004791705.1 KEGG: smt:Smal_1161 hypothetical protein YP_004791706.1 KEGG: sml:Smlt1383 S4 RNA-binding domain-containing protein; PFAM: RNA-binding S4; SMART: RNA-binding S4 YP_004791707.1 PFAM: Protein of unknown function DUF2302; KEGG: smt:Smal_1164 hypothetical protein YP_004791708.1 KEGG: smt:Smal_1165 catalase; PFAM: Catalase related subgroup; Catalase-related immune responsive YP_004791709.1 SMART: DNA mismatch repair protein MutS, C-terminal; DNA mismatch repair protein MutS, core; TIGRFAM: DNA mismatch repair protein MutS, type 1; KEGG: sml:Smlt1387 DNA mismatch repair protein MutS; HAMAP: DNA mismatch repair protein MutS, type 1; PFAM: DNA mismatch repair protein MutS, C-terminal; DNA mismatch repair protein MutS, core; DNA mismatch repair protein MutS-like, N-terminal; DNA mismatch repair protein MutS, connector; DNA mismatch repair protein MutS, clamp YP_004791710.1 KEGG: smt:Smal_1168 barnase inhibitor YP_004791711.1 PFAM: Polypeptide-transport-associated, ShlB-type; Haemolysin activator HlyB; KEGG: sml:Smlt1389 activation/secretion YP_004791712.1 KEGG: sml:Smlt1390 outer membrane surface heamagglutinin protein; TIGRFAM: Filamentous haemagglutinin, N-terminal, bacterial; Adhesin HecA 20-residue repeat x2; PFAM: Filamentous haemagglutinin, N-terminal, bacterial; Filamentous haemagglutinin, bacterial YP_004791713.1 manually curated; KEGG: sml:Smlt1399 hypothetical protein YP_004791714.1 KEGG: sml:Smlt1400 transmembrane protein YP_004791715.1 KEGG: sml:Smlt1401 hypothetical protein YP_004791716.1 KEGG: smt:Smal_1169 methyl-accepting chemotaxis sensory transducer; PFAM: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain; SMART: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain YP_004791717.1 PFAM: Rickettsia 17kDa surface antigen; KEGG: smt:Smal_1170 17 kDa surface antigen YP_004791718.1 KEGG: smt:Smal_1171 hypothetical protein YP_004791719.1 KEGG: smt:Smal_1172 ABC-2 type transporter YP_004791720.1 PFAM: Secretion protein HlyD; KEGG: smt:Smal_1173 secretion protein HlyD family protein YP_004791721.1 PFAM: Outer membrane efflux protein; KEGG: smt:Smal_1174 outer membrane efflux protein YP_004791722.1 KEGG: smt:Smal_1175 chromosome replication initiation inhibitor protein; TIGRFAM: Transcriptional regulator, ArgP; PFAM: HTH transcriptional regulator, LysR; LysR, substrate-binding YP_004791723.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: sml:Smlt1409 transmembrane LysE family transport protein YP_004791724.1 TIGRFAM: Peptidase M24A, methionine aminopeptidase, subfamily 1; KEGG: smt:Smal_1178 methionine aminopeptidase; PFAM: Peptidase M24, structural domain YP_004791725.1 KEGG: sml:Smlt1411 hypothetical protein YP_004791726.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sml:Smlt1412 glyoxylase/bleomycin resistance protein YP_004791727.1 KEGG: smt:Smal_1181 hypothetical protein YP_004791728.1 KEGG: smt:Smal_1182 hypothetical protein YP_004791729.1 KEGG: smt:Smal_1183 aminotransferase class-III; PFAM: Aminotransferase class-III YP_004791730.1 KEGG: sml:Smlt1416 phosphatase; TIGRFAM: Pyridoxal phosphate phosphatase-related; HAD-superfamily hydrolase, subfamily IB, PSPase-like; PFAM: Pyridoxal phosphate phosphatase-related YP_004791731.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: smt:Smal_1185 DegT/DnrJ/EryC1/StrS aminotransferase YP_004791732.1 PFAM: Protein of unknown function DUF6, transmembrane; KEGG: sml:Smlt1418 transmembrane protein YP_004791733.1 KEGG: sml:Smlt1419 transmembrane protein YP_004791734.1 PFAM: Alpha/beta hydrolase fold-1; KEGG: sml:Smlt1420 hypothetical protein YP_004791735.1 KEGG: sml:Smlt1421 two-component system sensor histidine kinase; PFAM: ATP-binding region, ATPase-like; Two-component sensor kinase N-terminal; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region YP_004791736.1 KEGG: sml:Smlt1422 two-component response regulator transcriptional regulator; PFAM: Signal transduction response regulator, receiver region; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver region YP_004791737.1 PFAM: Metallophosphoesterase; KEGG: sml:Smlt1423 metallophosphoesterase YP_004791738.1 PFAM: Helix-turn-helix, HxlR type; KEGG: smt:Smal_1192 HxlR family transcriptional regulator YP_004791739.1 PFAM: Major facilitator superfamily MFS-1; KEGG: smt:Smal_1193 major facilitator superfamily protein YP_004791740.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate cyclase, predicted; KEGG: sml:Smlt1425 GGDEF family signalling protein; SMART: Diguanylate cyclase, predicted YP_004791741.1 KEGG: sml:Smlt1426 outer membrane receptor FepA; TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug YP_004791742.1 KEGG: smt:Smal_1196 cation diffusion facilitator family transporter; TIGRFAM: Cation efflux protein; PFAM: Cation efflux protein YP_004791743.1 HAMAP: Endonuclease V; KEGG: sml:Smlt1429 endonuclease V; PFAM: Endonuclease V YP_004791744.1 PFAM: Phosphoglycerate mutase; TIGRFAM: Phosphoglycerate mutase 1; HAMAP: Phosphoglycerate mutase 1; KEGG: sml:Smlt1430 phosphoglyceromutase YP_004791745.1 KEGG: sus:Acid_3706 hypothetical protein YP_004791746.1 KEGG: sml:Smlt1431 peptidase, M13 family; PFAM: Peptidase M13; Peptidase M13, neprilysin, C-terminal YP_004791747.1 KEGG: sml:Smlt1432 HD domain signalling protein; PFAM: Metal-dependent phosphohydrolase, HD region, subdomain; SMART: Metal-dependent phosphohydrolase, HD region YP_004791748.1 TIGRFAM: Transcription-repair coupling factor; PFAM: Transcription-repair-coupling factor; Transcription factor CarD; DNA/RNA helicase, DEAD/DEAH box type, N-terminal; DNA/RNA helicase, C-terminal; KEGG: smt:Smal_1201 transcription-repair coupling factor; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal YP_004791749.1 PFAM: GCN5-related N-acetyltransferase; KEGG: smt:Smal_1202 GCN5-related N-acetyltransferase YP_004791750.1 PFAM: Protein of unknown function DUF519; KEGG: sml:Smlt1435 hypothetical protein YP_004791751.1 KEGG: sml:Smlt1436 DNA-binding response regulator CreB; PFAM: Signal transduction response regulator, receiver region; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver region YP_004791752.1 KEGG: sml:Smlt1437 sensory histidine kinase CreC; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; HAMP linker domain; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; HAMP linker domain YP_004791753.1 PFAM: Uncharacterised protein family, inner membrane CreD; KEGG: smt:Smal_1206 hypothetical protein YP_004791754.1 KEGG: smt:Smal_1207 hypothetical protein YP_004791755.1 PFAM: Peptidase M28; KEGG: sml:Smlt1440 peptidase YP_004791756.1 TIGRFAM: Glutamyl-tRNA synthetase, class Ic, bacterial/mitochondrial; KEGG: sml:Smlt1441 glutamyl-tRNA synthetase; PFAM: Glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain YP_004791757.1 PFAM: Ferric-uptake regulator; KEGG: smt:Smal_1210 Fur family ferric uptake regulator YP_004791758.1 PFAM: Secretion protein HlyD; KEGG: sml:Smlt1443 HlyD family secretion protein YP_004791759.1 PFAM: Major facilitator superfamily MFS-1; KEGG: smt:Smal_1212 major facilitator superfamily protein YP_004791760.1 PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: smt:Smal_1213 regulatory protein TetR YP_004791761.1 PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; KEGG: sml:Smlt1446 outer membrane protein YP_004791762.1 KEGG: smt:Smal_1215 hypothetical protein YP_004791763.1 KEGG: smt:Smal_1216 hypothetical protein YP_004791764.1 KEGG: sml:Smlt1449 phosphodiesterase-nucleotide pyrophosphatase; PFAM: Type I phosphodiesterase/nucleotide pyrophosphatase/phosphate transferase YP_004791765.1 KEGG: sml:Smlt1451 methylated-DNA--protein-cysteine methyltransferase; TIGRFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding; PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding; Methylguanine DNA methyltransferase, ribonuclease-like YP_004791766.1 KEGG: sml:Smlt1452 ADA-like transcriptional regulator; PFAM: Ada DNA repair, metal-binding; Helix-turn-helix, AraC type; AlkA, N-terminal; HhH-GPD domain; SMART: Helix-turn-helix, AraC domain; HhH-GPD domain YP_004791767.1 KEGG: smt:Smal_1220 hypothetical protein YP_004791768.1 KEGG: sml:Smlt1455 hypothetical protein YP_004791769.1 KEGG: sml:Smlt1458 transmembrane protein YP_004791770.1 KEGG: sml:Smlt1459 hypothetical protein; TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6; PFAM: Lycopene beta/epsilon cyclase YP_004791771.1 KEGG: sml:Smlt1460 hypothetical protein YP_004791772.1 KEGG: sml:Smlt1461 DEAD-box helicase; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; DNA/RNA helicase, C-terminal; DbpA, RNA-binding; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal YP_004791773.1 TIGRFAM: Diguanylate cyclase, predicted; PAS; PFAM: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; PAS fold; KEGG: smt:Smal_1226 PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase; SMART: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; PAC motif; PAS YP_004791774.1 SMART: Diguanylate cyclase, predicted; TIGRFAM: Diguanylate cyclase, predicted; KEGG: sml:Smlt1463 GGDEF domain signalling protein; PFAM: Diguanylate cyclase, predicted YP_004791775.1 TIGRFAM: Pseudouridine synthase, RsuA and RluB/E/F; PFAM: Pseudouridine synthase, RsuA and RluB/C/D/E/F; RNA-binding S4; KEGG: sml:Smlt1464 pseudouridine synthase; SMART: RNA-binding S4 YP_004791776.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate cyclase, predicted; GAF; KEGG: smt:Smal_1229 diguanylate cyclase; SMART: Diguanylate cyclase, predicted; GAF YP_004791777.1 KEGG: sml:Smlt1466 hypothetical protein YP_004791778.1 PFAM: Protein of unknown function DUF6, transmembrane; KEGG: smt:Smal_1231 hypothetical protein YP_004791779.1 PFAM: Protein of unknown function DUF72; KEGG: sml:Smlt1468 hypothetical protein YP_004791780.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sml:Smlt1469 glyoxylase/belomycin resistance protein YP_004791781.1 PFAM: Beta-lactamase-related; KEGG: smt:Smal_1234 beta-lactamase YP_004791782.1 PFAM: ABC transporter-like; KEGG: sml:Smlt1471 ABC transporter; SMART: ATPase, AAA+ type, core YP_004791783.1 KEGG: sml:Smlt1472 glucose-1-phosphatase/inositol phosphatase; PFAM: Histidine acid phosphatase YP_004791784.1 KEGG: sml:Smlt1473 poly(beta-D-mannuronate) lyase; PFAM: Alginate lyase YP_004791785.1 PFAM: Protein of unknown function DUF885, bacterial; KEGG: sml:Smlt1474 hypothetical protein YP_004791786.1 PFAM: Glutathione-dependent formaldehyde-activating, GFA; KEGG: sml:Smlt1475 hypothetical protein YP_004791787.1 KEGG: sml:Smlt1476 transmembrane protein YP_004791788.1 KEGG: sml:Smlt1477 hypothetical protein YP_004791789.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: sml:Smlt1478 LysR family transcriptional regulator YP_004791790.1 PFAM: Protein of unknown function DUF6, transmembrane; KEGG: smt:Smal_1242 hypothetical protein YP_004791791.1 KEGG: smt:Smal_1243 secreted peptidyl prolyl cis-trans isomerase, cyclophilin type YP_004791792.1 PFAM: Transcriptional regulator PadR N-terminal-like; KEGG: smt:Smal_1244 PadR-like family transcriptional regulator YP_004791793.1 KEGG: sml:Smlt1485 transmembrane protein YP_004791794.1 KEGG: sml:Smlt1486 PHB depolymerase; TIGRFAM: Polyhydroxyalkanoate depolymerase; PFAM: PHB de-polymerase, C-terminal YP_004791795.1 PFAM: Methyltransferase type 12; KEGG: sml:Smlt1487 methyltransferase YP_004791796.1 PFAM: Uncharacterised protein family UPF0093; KEGG: smt:Smal_1248 hypothetical protein YP_004791797.1 PFAM: Acetyl-CoA carboxylase, alpha subunit, conserved region; TIGRFAM: Acetyl-CoA carboxylase, alpha subunit; HAMAP: Acetyl-CoA carboxylase, alpha subunit; KEGG: sml:Smlt1490 acetyl-CoA carboxylase carboxyltransferase subunit alpha YP_004791798.1 KEGG: sml:Smlt1491 hypothetical protein YP_004791799.1 SMART: Polymerase/histidinol phosphatase, N-terminal; TIGRFAM: DNA polymerase III, alpha subunit; KEGG: smt:Smal_1251 DNA polymerase III subunit alpha; PFAM: Bacterial DNA polymerase III, alpha subunit; PHP, C-terminal; Nucleic acid binding, OB-fold, tRNA/helicase-type YP_004791800.1 KEGG: smt:Smal_1252 ribonuclease H; PFAM: Ribonuclease HII/HIII YP_004791801.1 PFAM: Glycosyl transferase, family 19; TIGRFAM: Glycosyl transferase, family 19; HAMAP: Lipid-A-disaccharide synthase; KEGG: sml:Smlt1494 lipid-A-disaccharide synthase YP_004791802.1 PFAM: Bacterial transferase hexapeptide repeat; TIGRFAM: Acyl-[ACP]--UDP-N-acetylglucosamine O-acyltransferase; HAMAP: Acyl-[ACP]--UDP-N-acetylglucosamine O-acyltransferase; KEGG: sml:Smlt1495 UDP-N-acetylglucosamine acyltransferase YP_004791803.1 TIGRFAM: Beta-hydroxyacyl-ACP dehydratase FabZ; HAMAP: (3R)-hydroxymyristoyl-[ACP] dehydratase; KEGG: sml:Smlt1496 (3R)-hydroxymyristoyl-ACP dehydratase; PFAM: Beta-hydroxyacyl-ACP dehydratase, FabA/FabZ YP_004791804.1 TIGRFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; HAMAP: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; KEGG: smt:Smal_1256 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; PFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, non-repeat region; Bacterial transferase hexapeptide repeat YP_004791805.1 KEGG: sml:Smlt1498 outer membrane protein; TIGRFAM: Outer membrane assembly protein, YaeT; PFAM: Bacterial surface antigen (D15); Surface antigen variable number YP_004791806.1 KEGG: sml:Smlt1499 transmembrane protein; TIGRFAM: Peptidase M50, membrane-associated zinc metallopeptidase; PFAM: Peptidase M50 YP_004791807.1 PFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase, N-terminal; 1-deoxy-D-xylulose 5-phosphate reductoisomerase, C-terminal; TIGRFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; HAMAP: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; KEGG: sml:Smlt1500 1-deoxy-D-xylulose 5-phosphate reductoisomerase YP_004791808.1 PFAM: Phosphatidate cytidylyltransferase; KEGG: smt:Smal_1260 phosphatidate cytidylyltransferase YP_004791809.1 PFAM: Di-trans-poly-cis-decaprenylcistransferase-like; TIGRFAM: Di-trans-poly-cis-decaprenylcistransferase-like; HAMAP: UDP pyrophosphate synthase; KEGG: smt:Smal_1261 UDP pyrophosphate synthase YP_004791810.1 TIGRFAM: Ribosome recycling factor; HAMAP: Ribosome recycling factor, bacterial-like; KEGG: smt:Smal_1262 ribosome recycling factor; PFAM: Ribosome recycling factor YP_004791811.1 KEGG: sml:Smlt1504 uridylate kinase; TIGRFAM: Uridylate kinase, bacteria; PFAM: Aspartate/glutamate/uridylate kinase YP_004791812.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Metal-dependent hydrolase HDOD; Diguanylate cyclase, predicted; KEGG: sml:Smlt1505 transmembrane GGDEF family signalling protein; SMART: Diguanylate cyclase, predicted YP_004791813.1 TIGRFAM: Translation elongation factor EFTs/EF1B; HAMAP: Elongation factor Ts; KEGG: sml:Smlt1506 elongation factor Ts; PFAM: Translation elongation factor EFTs/EF1B, dimerisation; Ubiquitin-associated/translation elongation factor EF1B, N-terminal YP_004791814.1 KEGG: sml:Smlt1507 30S ribosomal protein S2; TIGRFAM: Ribosomal protein S2, bacteria/mitochondria/plastid; PFAM: Ribosomal protein S2 YP_004791815.1 KEGG: sml:Smlt1508 pili assembly chaperone YP_004791816.1 KEGG: sml:Smlt1509 hypothetical protein YP_004791817.1 PFAM: Spore coat protein U; KEGG: sml:Smlt1510 exported lipoprotein YP_004791818.1 PFAM: Fimbrial biogenesis outer membrane usher protein; KEGG: sml:Smlt1511 fimbriae usher protein YP_004791819.1 KEGG: sml:Smlt1512 exported fimbriae-related chaperone YP_004791820.1 PFAM: Spore coat protein U; KEGG: sml:Smlt1513 hypothetical protein YP_004791821.1 TIGRFAM: Peptidase M24A, methionine aminopeptidase, subfamily 1; KEGG: sml:Smlt1513A methionine aminopeptidase; PFAM: Peptidase M24, structural domain YP_004791822.1 KEGG: sml:Smlt1514 PII uridylyl-transferase; PFAM: PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase; Nucleotidyltransferase; Metal-dependent phosphohydrolase, HD region, subdomain; Amino acid-binding ACT; TIGRFAM: Protein-PII uridylyltransferase; HAMAP: Protein-PII uridylyltransferase; SMART: Metal-dependent phosphohydrolase, HD region YP_004791823.1 TIGRFAM: 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase; HAMAP: 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase; KEGG: sml:Smlt1515 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase YP_004791824.1 KEGG: smt:Smal_1276 hypothetical protein YP_004791825.1 KEGG: smt:Smal_1277 arsenate reductase-like protein; TIGRFAM: Conserved hypothetical protein, ArsC related; PFAM: Arsenate reductase-like YP_004791826.1 TIGRFAM: Succinyl-diaminopimelate desuccinylase, proteobacteria; HAMAP: Succinyl-diaminopimelate desuccinylase, proteobacteria; KEGG: smt:Smal_1278 succinyl-diaminopimelate desuccinylase; PFAM: Peptidase M20; Peptidase M20, dimerisation YP_004791827.1 KEGG: smt:Smal_1279 Sel1 domain-containing protein repeat-containing protein; PFAM: Sel1-like; SMART: Sel1-like YP_004791829.1 TIGRFAM: Asparagine synthase, glutamine-hydrolyzing; KEGG: sml:Smlt1520 asparagine synthetase B; PFAM: Asparagine synthase; Glutamine amidotransferase, class-II YP_004791830.1 PFAM: Cation/H+ exchanger; KEGG: smt:Smal_1281 sodium/hydrogen exchanger YP_004791831.1 KEGG: sml:Smlt1522 penicillin acylase 2; PFAM: Peptidase S45, penicillin amidase YP_004791832.1 KEGG: smt:Smal_1283 bacterioferritin; TIGRFAM: Bacterioferritin; PFAM: Ferritin/Dps protein YP_004791833.1 SMART: DNA topoisomerase, type IIA, subunit A or C-terminal; TIGRFAM: DNA topoisomerase IV, subunit A, Gram-negative; KEGG: sml:Smlt1525 DNA topoisomerase IV subunit A; PFAM: DNA topoisomerase, type IIA, subunit A or C-terminal; DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel YP_004791834.1 KEGG: sml:Smlt1526 helix-turn-helix transcriptional regulator; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain YP_004791835.1 KEGG: sml:Smlt1527 MarR family transcriptional regulator; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR YP_004791836.1 KEGG: sml:Smlt1528 outer membrane multidrug efflux protein; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT; PFAM: Outer membrane efflux protein YP_004791837.1 PFAM: Secretion protein HlyD; KEGG: smt:Smal_1288 secretion protein HlyD family protein YP_004791838.1 KEGG: sml:Smlt1530 multidrug resistance protein B; TIGRFAM: Drug resistance transporter EmrB/QacA subfamily; PFAM: Major facilitator superfamily MFS-1 YP_004791839.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: sml:Smlt1532 LysR family regulatory protein YP_004791840.1 PFAM: Protein of unknown function DUF81; KEGG: smt:Smal_1292 hypothetical protein YP_004791841.1 TIGRFAM: Ribonuclease R, bacterial; Ribonuclease II/ribonuclease R, bacteria; PFAM: Ribonuclease II/R; Ribonuclease B, OB region N-terminal; Ribosomal protein S1, RNA binding domain; KEGG: sml:Smlt1534 ribonuclease R (RNase R); SMART: Cold shock protein YP_004791842.1 PFAM: Glutathione-dependent formaldehyde-activating, GFA; KEGG: smt:Smal_1294 glutathione-dependent formaldehyde-activating protein YP_004791843.1 KEGG: sml:Smlt1536 tRNA/rRNA methyltransferase; TIGRFAM: RNA methyltransferase TrmH, group 3; PFAM: tRNA/rRNA methyltransferase, SpoU; RNA 2-O ribose methyltransferase, substrate binding YP_004791844.1 KEGG: smt:Smal_1296 NodT family RND efflux system outer membrane lipoprotein; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT; PFAM: Outer membrane efflux protein YP_004791845.1 PFAM: ABC transporter-like; Protein of unknown function DUF214, permase predicted; KEGG: smt:Smal_1297 ABC transporter-like protein; SMART: ATPase, AAA+ type, core YP_004791846.1 KEGG: sml:Smlt1539 HlyD family secretion protein; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD YP_004791847.1 KEGG: smt:Smal_1299 winged helix family two component transcriptional regulator; PFAM: Signal transduction response regulator, receiver region; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver region YP_004791848.1 KEGG: smt:Smal_1300 integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase-like; HAMP linker domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SMART: ATP-binding region, ATPase-like; HAMP linker domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region YP_004791849.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate cyclase, predicted; Two component regulator three Y; Two component regulator propeller; KEGG: smt:Smal_1301 two component regulator propeller domain-containing protein; SMART: Diguanylate cyclase, predicted YP_004791850.1 KEGG: bsa:Bacsa_3160 hypothetical protein YP_004791851.1 KEGG: sml:Smlt1543 ribonuclease T; PFAM: Exonuclease, RNase T/DNA polymerase III; manually curated; TIGRFAM: Ribonuclease T; SMART: Exonuclease; HAMAP: Ribonuclease T YP_004791852.1 PFAM: DoxX; KEGG: smt:Smal_1303 DoxX family protein YP_004791853.1 PFAM: Protein of unknown function DUF2063; KEGG: sml:Smlt1545 hypothetical protein YP_004791854.1 KEGG: sml:Smlt1546 hypothetical protein; HAMAP: UPF0276 protein; PFAM: Protein of unknown function DUF692 YP_004791855.1 KEGG: sml:Smlt1547 hypothetical protein YP_004791856.1 KEGG: sml:Smlt1548 phosphate transport system-like protein; TIGRFAM: PhoU; PFAM: PhoU YP_004791857.1 SMART: ATPase, AAA+ type, core; TIGRFAM: Phosphate transport system permease protein 1; KEGG: smt:Smal_1308 phosphate transporter ATP-binding protein; PFAM: ABC transporter-like YP_004791858.1 KEGG: smt:Smal_1309 phosphate ABC transporter inner membrane subunit PstA; TIGRFAM: Phosphate transport system permease protein 2; PFAM: Binding-protein-dependent transport systems inner membrane component YP_004791859.1 KEGG: sml:Smlt1551 phosphate transport system permease; TIGRFAM: Phosphate ABC transporter, permease protein PstC; PFAM: Binding-protein-dependent transport systems inner membrane component YP_004791860.1 KEGG: smt:Smal_1311 phosphate ABC transporter periplasmic phosphate-binding protein; TIGRFAM: Periplasmic phosphate binding protein; PFAM: Bacterial extracellular solute-binding, family 1 YP_004791861.1 KEGG: smt:Smal_1312 phosphate ABC transporter periplasmic phosphate-binding protein; TIGRFAM: Periplasmic phosphate binding protein; PFAM: Bacterial extracellular solute-binding, family 1 YP_004791862.1 PFAM: Phosphate-selective porin O/P; KEGG: smt:Smal_1313 phosphate-selective porin O and P YP_004791863.1 SMART: HhH-GPD domain; TIGRFAM: Endonuclease III/Nth; KEGG: sml:Smlt1556 endonuclease III; PFAM: HhH-GPD domain; Endonuclease III-like, iron-sulphur cluster loop motif YP_004791864.1 KEGG: sml:Smlt1557 hypothetical protein YP_004791865.1 KEGG: sml:Smlt1558 3-hydroxybutyryl-CoA dehydratase; PFAM: Crotonase, core YP_004791866.1 PFAM: Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal; Peptidyl-prolyl cis-trans isomerase, FKBP-type; KEGG: sml:Smlt1559 peptidyl-prolyl cis-trans isomerase YP_004791867.1 KEGG: smt:Smal_1318 hypothetical protein; manually curated; PFAM: Protein of unknown function DUF1289; NUDIX hydrolase domain YP_004791868.1 PFAM: Rhodanese-like; KEGG: sml:Smlt1561 sulfurtransferase; SMART: Rhodanese-like YP_004791869.1 KEGG: sml:Smlt1562 N-acetylmuramoyl-L-alanine amidase; PFAM: N-acetylmuramoyl-L-alanine amidase, family 2; SMART: N-acetylmuramoyl-L-alanine amidase, family 2 YP_004791870.1 KEGG: sml:Smlt1563 hypothetical protein YP_004791871.1 HAMAP: S-adenosyl-L-dependent RNA methyltransferase, bacteria,; KEGG: sml:Smlt1564 23S rRNA m(2)G2445 methyltransferase; PFAM: RNA methylase; THUMP; Protein of unknown function methylase YP_004791872.1 KEGG: smt:Smal_1323 hypothetical protein YP_004791873.1 PFAM: PepSY-associated TM helix; KEGG: smt:Smal_1324 hypothetical protein YP_004791874.1 KEGG: sml:Smlt1567 transmembrane protein YP_004791875.1 KEGG: smt:Smal_1326 TonB-dependent siderophore receptor; TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug YP_004791876.1 PFAM: Protein of unknown function DUF445, transmembrane; KEGG: smt:Smal_1327 hypothetical protein YP_004791877.1 KEGG: smt:Smal_1328 hypothetical protein YP_004791878.1 KEGG: smt:Smal_1329 beta alanine--pyruvate transaminase; PFAM: Aminotransferase class-III YP_004791879.1 KEGG: smt:Smal_1330 aldehyde dehydrogenase; PFAM: Aldehyde dehydrogenase YP_004791880.1 PFAM: General substrate transporter; KEGG: sml:Smlt1573 major facilitator superfamily transporter YP_004791881.1 TIGRFAM: Haemerythrin-like, metal-binding; HAMAP: Bacteriohemerythrin; KEGG: sml:Smlt1574 hypothetical protein; PFAM: Haemerythrin/HHE cation-binding motif YP_004791882.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate cyclase, predicted; Signal transduction response regulator, receiver region; KEGG: smt:Smal_1334 response regulator receiver modulated diguanylate cyclase; SMART: Diguanylate cyclase, predicted; Signal transduction response regulator, receiver region YP_004791883.1 KEGG: smt:Smal_1335 MASE1 domain-containing protein; manually curated; PFAM: MASE1 YP_004791884.1 KEGG: smt:Smal_1336 hypothetical protein YP_004791885.1 PFAM: MASE1; KEGG: smt:Smal_1337 MASE1 domain-containing protein YP_004791886.1 PFAM: MASE1; KEGG: sml:Smlt1577 transmembrane protein YP_004791887.1 PFAM: FAD dependent oxidoreductase; KEGG: sml:Smlt1578 oxidoreductase YP_004791888.1 KEGG: smt:Smal_1339 peptidase C26; PFAM: Peptidase C26 YP_004791889.1 KEGG: sml:Smlt1580 glutamine synthetase; PFAM: Glutamine synthetase, catalytic region; Glutamine synthetase, beta-Grasp YP_004791890.1 PFAM: Bacterial extracellular solute-binding, family 1; KEGG: smt:Smal_1341 family 1 extracellular solute-binding protein YP_004791891.1 SMART: ATPase, AAA+ type, core; TIGRFAM: Spermidine/putrescine ABC transporter ATP-binding subunit; KEGG: sml:Smlt1584 putrescine transport ATP-binding protein; PFAM: ABC transporter-like; Transport-associated OB, type 2 YP_004791892.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: sml:Smlt1585 putrescine transport system permease YP_004791893.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: sml:Smlt1586 putrescine transport system permease PotI YP_004791894.1 KEGG: smt:Smal_1346 aldehyde dehydrogenase; PFAM: Aldehyde dehydrogenase YP_004791895.1 PFAM: Mg2+ transporter protein, CorA-like; KEGG: sml:Smlt1589 transmembrane magnesium/cobalt transport protein YP_004791896.1 KEGG: sml:Smlt1590 transmembrane protein YP_004791897.1 PFAM: Cystathionine beta-synthase, core; Transporter-associated region; KEGG: sml:Smlt1591 cation transporter efflux protein component YP_004791898.1 KEGG: smt:Smal_1350 hypothetical protein YP_004791900.1 TIGRFAM: Uncharacterised protein family UPF0054; HAMAP: Uncharacterised protein family UPF0054; KEGG: smt:Smal_1352 metalloprotease; PFAM: Uncharacterised protein family UPF0054 YP_004791901.1 PFAM: PhoH-like protein; KEGG: smt:Smal_1353 PhoH family protein YP_004791902.1 PFAM: Secretion protein HlyD; KEGG: smt:Smal_1354 secretion protein HlyD family protein YP_004791903.1 PFAM: ABC transporter-like; KEGG: sml:Smlt1598 ABC transporter ATP-binding protein; SMART: ATPase, AAA+ type, core YP_004791904.1 PFAM: ABC-2 type transporter; KEGG: sml:Smlt1599 ABC transporter transmembrane protein YP_004791905.1 SMART: Elongator protein 3/MiaB/NifB; TIGRFAM: tRNA-i(6)A37 modification enzyme MiaB; Methylthiotransferase; KEGG: smt:Smal_1357 (dimethylallyl)adenosine tRNA methylthiotransferase; HAMAP: tRNA-i(6)A37 modification enzyme MiaB; PFAM: Methylthiotransferase, N-terminal; Radical SAM; Deoxyribonuclease/rho motif-related TRAM YP_004791906.1 PFAM: Glutathione S-transferase, N-terminal; KEGG: smt:Smal_1358 glutathione S-transferase domain-containing protein YP_004791907.1 KEGG: sml:Smlt1602 DeoR family transcriptional regulator YP_004791908.1 PFAM: Lytic transglycosylase-like, catalytic; KEGG: sml:Smlt1603 transglycosylase, SLT family YP_004791909.1 TIGRFAM: Ubiquinol-cytochrome c reductase, iron-sulphur subunit; Twin-arginine translocation pathway, signal sequence; KEGG: smt:Smal_1361 ubiquinol-cytochrome c reductase, iron-sulfur subunit; PFAM: Ubiquitinol-cytochrome C reductase, Fe-S subunit, TAT signal; Rieske [2Fe-2S] iron-sulphur domain YP_004791910.1 PFAM: Cytochrome b/b6, N-terminal; Cytochrome b/b6, C-terminal; KEGG: sml:Smlt1605 ubiquinol-cytochrome c reductase cytochrome b subunit YP_004791911.1 PFAM: Cytochrome c1; KEGG: smt:Smal_1363 cytochrome c1 YP_004791912.1 PFAM: Glutathione S-transferase, N-terminal; Glutathione S-transferase, C-terminal; KEGG: sml:Smlt1607 stringent starvation protein A YP_004791913.1 PFAM: Stringent starvation protein B; KEGG: sml:Smlt1608 ClpXP protease specificity-enhancing factor YP_004791914.1 KEGG: sml:Smlt1609 hypothetical protein YP_004791915.1 PFAM: Protein of unknown function DUF2272; KEGG: sml:Smlt1610 hypothetical protein YP_004791916.1 TIGRFAM: Nicotinate-nucleotide pyrophosphorylase; KEGG: sml:Smlt1611 nicotinate-nucleotide pyrophosphorylase; PFAM: Quinolinate phosphoribosyl transferase YP_004791917.1 PFAM: Protein of unknown function DUF343; KEGG: sml:Smlt1612 hypothetical protein YP_004791918.1 TIGRFAM: 1-(5-Phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; KEGG: sml:Smlt1613 phosphoribosylaminoimidazole carboxylase catalytic subunit; PFAM: 1-(5-Phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase YP_004791919.1 TIGRFAM: Phosphoribosylaminoimidazole carboxylase, ATPase subunit; KEGG: sml:Smlt1614 phosphoribosylaminoimidazole carboxylase ATPase subunit; PFAM: ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type YP_004791920.1 KEGG: smt:Smal_1372 alkylhydroperoxidase like protein; TIGRFAM: Alkylhydroperoxidase AhpD core; PFAM: Carboxymuconolactone decarboxylase YP_004791921.1 PFAM: Manganese/iron superoxide dismutase, C-terminal; Manganese/iron superoxide dismutase, N-terminal; KEGG: sml:Smlt1616b superoxide dismutase YP_004791922.1 KEGG: smt:Smal_1374 glutaredoxin-like protein; TIGRFAM: Glutaredoxin-related protein; PFAM: Glutaredoxin YP_004791923.1 PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: smt:Smal_1375 short-chain dehydrogenase/reductase SDR YP_004791924.1 KEGG: xal:XALc_1278 TonB-dependent outer membrane receptor oar-like protein YP_004791925.1 PFAM: Conserved hypothetical protein CHP00730; KEGG: sml:Smlt1620 lysine decarboxylase protein YP_004791926.1 KEGG: smt:Smal_1378 type IV pilus assembly protein FimT YP_004791927.1 TIGRFAM: Pilus modification type IV, PilV; Prepilin-type cleavage/methylation, N-terminal; KEGG: smt:Smal_1379 type IV pilus modification protein PilV YP_004791928.1 KEGG: smt:Smal_1380 hypothetical protein YP_004791929.1 KEGG: smt:Smal_1381 PilX protein YP_004791930.1 KEGG: smt:Smal_1382 PilY1 protein YP_004791931.1 KEGG: smt:Smal_1383 type IV pilin PilE YP_004791932.1 KEGG: smt:Smal_1384 fimbrial biogenesis protein YP_004791933.1 SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal; TIGRFAM: Excinuclease ABC, B subunit; KEGG: smt:Smal_1385 excinuclease ABC subunit B; HAMAP: Excinuclease ABC, B subunit; PFAM: DNA/RNA helicase, C-terminal; Restriction endonuclease, type I, R subunit/Type III, Res subunit; UvrB/UvrC protein YP_004791934.1 KEGG: smt:Smal_1386 hypothetical protein YP_004791935.1 KEGG: smt:Smal_1390 hypothetical protein YP_004791936.1 KEGG: smt:Smal_1391 hypothetical protein YP_004791937.1 PFAM: MltA-interacting MipA; KEGG: smt:Smal_1392 MltA-interacting MipA family protein YP_004791938.1 KEGG: smt:Smal_1393 winged helix family two component transcriptional regulator; PFAM: Signal transduction response regulator, receiver region; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver region YP_004791939.1 KEGG: sml:Smlt1636 two-component sensor histidine kinase transcriptional regulator; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; HAMP linker domain; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region YP_004791940.1 KEGG: smt:Smal_1395 DNA internalization-related competence protein ComEC/Rec2; TIGRFAM: Competence protein ComEC/Rec2; ComEC/Rec2-related protein; PFAM: ComEC/Rec2-related protein YP_004791941.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: smt:Smal_1396 MotA/TolQ/ExbB proton channel YP_004791942.1 PFAM: Biopolymer transport protein ExbD/TolR; KEGG: smt:Smal_1397 biopolymer transport protein ExbD/TolR YP_004791943.1 SMART: ATPase, AAA+ type, core; TIGRFAM: ABC transporter, lipid A export, MsbA; KEGG: sml:Smlt1640 lipid A export ATP-binding/permease; PFAM: ABC transporter-like; ABC transporter, transmembrane region YP_004791944.1 PFAM: Tetraacyldisaccharide 4'-kinase; TIGRFAM: Tetraacyldisaccharide 4'-kinase; HAMAP: Tetraacyldisaccharide 4'-kinase; KEGG: smt:Smal_1399 tetraacyldisaccharide 4'-kinase YP_004791945.1 PFAM: Acylneuraminate cytidylyltransferase; TIGRFAM: 3-deoxy-D-manno-octulosonate cytidylyltransferase; HAMAP: 3-deoxy-D-manno-octulosonate cytidylyltransferase; KEGG: smt:Smal_1400 3-deoxy-manno-octulosonate cytidylyltransferase YP_004791946.1 PFAM: Protein-tyrosine phosphatase, low molecular weight; KEGG: smt:Smal_1401 protein tyrosine phosphatase; SMART: Protein-tyrosine phosphatase, low molecular weight YP_004791947.1 PFAM: NHL repeat; KEGG: smt:Smal_1402 NHL repeat containing protein YP_004791948.1 SMART: Excinuclease ABC, C subunit, N-terminal; Helix-hairpin-helix DNA-binding motif, class 1; TIGRFAM: Excinuclease ABC, C subunit; KEGG: smt:Smal_1403 excinuclease ABC subunit C; HAMAP: UvrABC system protein C; PFAM: Excinuclease ABC, C subunit, C-terminal; Excinuclease ABC, C subunit, N-terminal; UvrB/UvrC protein YP_004791949.1 TIGRFAM: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; KEGG: sml:Smlt1646 phosphotidylglycerophosphate synthetase; PFAM: CDP-alcohol phosphatidyltransferase YP_004791950.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: smt:Smal_1405 monooxygenase FAD-binding YP_004791951.1 KEGG: sml:Smlt1651 outer membrane efflux protein; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT; PFAM: Outer membrane efflux protein YP_004791952.1 PFAM: Protein of unknown function DUF214, permase predicted; KEGG: sml:Smlt1652 ABC transporter membrane protein YP_004791953.1 PFAM: ABC transporter-like; KEGG: smt:Smal_1409 ABC transporter-like protein; SMART: ATPase, AAA+ type, core YP_004791954.1 PFAM: Secretion protein HlyD; KEGG: sml:Smlt1654 HlyD family secretion protein YP_004791955.1 KEGG: sml:Smlt1655 transmembrane protein YP_004791956.1 KEGG: sml:Smlt1656 transmembrane protein YP_004791957.1 PFAM: NUDIX hydrolase domain; KEGG: sml:Smlt1667 MutT/NUDIX family protein YP_004791958.1 PFAM: GCN5-related N-acetyltransferase; KEGG: sml:Smlt1668 acetyltransferase YP_004791959.1 KEGG: smt:Smal_1414 hypothetical protein YP_004791960.1 SMART: HTH transcriptional regulator, ArsR; KEGG: sml:Smlt1672 ArsR family transcriptional regulator YP_004791961.1 KEGG: sml:Smlt1674 hypothetical protein YP_004791962.1 KEGG: smt:Smal_1417 hypothetical protein YP_004791963.1 KEGG: bcj:BCAM0341 FMN-dependent NADH-azoreductase; HAMAP: FMN-dependent NADH-azoreductase; PFAM: Flavodoxin-like fold YP_004791964.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: bcj:BCAM0342 LysR family regulatory protein YP_004791965.1 manually curated; KEGG: sml:Smlt1675 hypothetical protein YP_004791967.1 KEGG: smt:Smal_1420 hypothetical protein YP_004791968.1 KEGG: sml:Smlt1682 AraC family transcriptional regulator; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain YP_004791969.1 TIGRFAM: Camphor resistance CrcB protein; HAMAP: CrcB-like protein; KEGG: smt:Smal_1422 CrcB protein; PFAM: Camphor resistance CrcB protein YP_004791970.1 KEGG: smt:Smal_1423 hypothetical protein YP_004791971.1 KEGG: smt:Smal_1424 hypothetical protein YP_004791972.1 KEGG: sml:Smlt1686 hypothetical protein YP_004791973.1 KEGG: sml:Smlt1687 transmembrane ferredoxin YP_004791974.1 KEGG: smt:Smal_1427 hypothetical protein YP_004791975.1 KEGG: smt:Smal_1428 sec-independent protein translocase protein TatC YP_004791976.1 TIGRFAM: Oxygen-independent coproporphyrinogen III oxidase HemN; PFAM: HemN, C-terminal; Radical SAM; KEGG: sml:Smlt1690 coproporphyrinogen III oxidase; SMART: Elongator protein 3/MiaB/NifB YP_004791977.1 PFAM: Integrase, catalytic core, phage; KEGG: xfa:XF2530 phage-related integrase YP_004791978.1 KEGG: xfn:XfasM23_1274 hypothetical protein YP_004791979.1 KEGG: bpm:BURPS1710b_1669 methyltransferase YP_004791987.1 KEGG: sgl:SG1828 hypothetical protein YP_004791988.1 KEGG: sgl:SG1827 hypothetical protein YP_004791992.1 KEGG: bbr:BB1672 hypothetical protein YP_004791999.1 SMART: Helix-turn-helix type 3 YP_004792000.1 KEGG: psu:Psesu_1142 hypothetical protein YP_004792001.1 KEGG: kpn:KPN_01390 hypothetical protein YP_004792002.1 PFAM: DNA helicase, DnaB-like, C-terminal; DNA helicase, DnaB-like, N-terminal; KEGG: psu:Psesu_1150 DnaB domain protein helicase domain protein YP_004792004.1 KEGG: rpf:Rpic12D_4783 hypothetical protein YP_004792005.1 PFAM: Recombinase NinB; KEGG: hypothetical protein YP_004792007.1 KEGG: slt:Slit_1933 hypothetical protein YP_004792009.1 KEGG: xfn:XfasM23_1429 hypothetical protein YP_004792013.1 KEGG: ppg:PputGB1_3421 hypothetical protein YP_004792014.1 PFAM: Protein of unknown function DUF2280; KEGG: pfl:PFL_3767 hypothetical protein YP_004792015.1 KEGG: slt:Slit_1922 phage uncharacterized protein YP_004792016.1 KEGG: har:HEAR2283 hypothetical protein YP_004792017.1 KEGG: har:HEAR2281 hypothetical protein YP_004792018.1 KEGG: har:HEAR2280 hypothetical protein YP_004792021.1 KEGG: har:HEAR2274 hypothetical protein YP_004792023.1 KEGG: har:HEAR2272 hypothetical protein YP_004792024.1 KEGG: prw:PsycPRwf_1302 hypothetical protein YP_004792027.1 KEGG: har:HEAR2270 hypothetical protein YP_004792028.1 KEGG: har:HEAR2269 hypothetical protein YP_004792029.1 KEGG: rlt:Rleg2_1152 hypothetical protein YP_004792030.1 KEGG: psu:Psesu_1175 hypothetical protein YP_004792033.1 KEGG: smt:Smal_2511 lysozyme; PFAM: Glycoside hydrolase, family 24 YP_004792036.1 KEGG: psu:Psesu_1159 hypothetical protein YP_004792037.1 KEGG: psu:Psesu_1160 hypothetical protein YP_004792038.1 KEGG: xal:XALc_0230 hypothetical protein YP_004792039.1 PFAM: Protein of unknown function DUF159; KEGG: req:REQ_09000 hypothetical protein YP_004792040.1 KEGG: smt:Smal_2483 hypothetical protein YP_004792041.1 PFAM: BLUF; KEGG: smt:Smal_1430 BLUF domain-containing protein YP_004792042.1 KEGG: smt:Smal_1431 nucleotide sugar dehydrogenase; TIGRFAM: Nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase, N-terminal; UDP-glucose/GDP-mannose dehydrogenase, dimerisation; UDP-glucose/GDP-mannose dehydrogenase, C-terminal YP_004792043.1 KEGG: sml:Smlt1693 glutamate synthase; PFAM: Glutamate synthase, central-C YP_004792044.1 PFAM: GCN5-related N-acetyltransferase; KEGG: sml:Smlt1694 acetyltransferase YP_004792045.1 KEGG: sml:Smlt1695 hypothetical protein; TIGRFAM: uncharacterized flavoprotein, PP_4765 family; HI0933-like protein; PFAM: HI0933-like protein YP_004792046.1 KEGG: smt:Smal_1435 FKBP-type peptidylprolyl isomerase; PFAM: Peptidyl-prolyl cis-trans isomerase, FKBP-type YP_004792047.1 KEGG: sml:Smlt1697 transmembrane protein YP_004792048.1 KEGG: sml:Smlt1699 rhodanese superfamily protein; PFAM: Rhodanese-like; SMART: Rhodanese-like YP_004792049.1 KEGG: smt:Smal_1438 luciferase-like monooxygenase; TIGRFAM: Luciferase family oxidoreductase, group 1; PFAM: Luciferase-like, subgroup YP_004792050.1 PFAM: Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain; KEGG: smt:Smal_1439 pyridoxamine 5'-phosphate oxidase-like protein YP_004792051.1 PFAM: Exopolysaccharide synthesis, ExoD; KEGG: smt:Smal_1440 exopolysaccharide synthesis ExoD YP_004792052.1 PFAM: Protein of unknown function DUF21; Cystathionine beta-synthase, core; Transporter-associated region; KEGG: sml:Smlt1704 transmembrane CorC/HlyC family transporter YP_004792053.1 KEGG: smt:Smal_1442 hypothetical protein YP_004792054.1 PFAM: Phosphate transporter; KEGG: smt:Smal_1443 phosphate transporter YP_004792055.1 PFAM: Peptidase S10, serine carboxypeptidase; KEGG: sml:Smlt1707 carboxypeptidase YP_004792056.1 PFAM: GCN5-related N-acetyltransferase; KEGG: smt:Smal_1445 GCN5-related N-acetyltransferase YP_004792057.1 SMART: DNA topoisomerase, type IIA, subunit B or N-terminal; ATP-binding region, ATPase-like; TIGRFAM: DNA topoisomerase IV, subunit B, Gram-negative; KEGG: sml:Smlt1709 DNA topoisomerase IV subunit B; PFAM: DNA topoisomerase, type IIA, subunit B, region 2; ATP-binding region, ATPase-like; DNA topoisomerase, type IIA, subunit B, C-terminal YP_004792058.1 KEGG: smt:Smal_1447 hypothetical protein YP_004792059.1 PFAM: CTP synthase, N-terminal; Glutamine amidotransferase class-I, C-terminal; TIGRFAM: CTP synthase; HAMAP: CTP synthase; KEGG: sml:Smlt1711 CTP synthetase YP_004792060.1 PFAM: DAHP synthetase I/KDSA; TIGRFAM: 3-deoxy-8-phosphooctulonate synthase; HAMAP: 3-deoxy-8-phosphooctulonate synthase; KEGG: smt:Smal_1449 2-dehydro-3-deoxyphosphooctonate aldolase YP_004792061.1 KEGG: sml:Smlt1713 hypothetical protein YP_004792062.1 KEGG: smt:Smal_1451 hypothetical protein YP_004792063.1 PFAM: Enolase, C-terminal; Enolase, N-terminal; TIGRFAM: Enolase; HAMAP: Enolase; KEGG: sml:Smlt1715 phosphopyruvate hydratase YP_004792064.1 KEGG: sml:Smlt1716 cell division protein FtsB; HAMAP: Cell division protein ftsB-like protein; PFAM: Septum formation initiator YP_004792065.1 TIGRFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; HAMAP: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; KEGG: sml:Smlt1717 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase YP_004792066.1 KEGG: sml:Smlt1718 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; TIGRFAM: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, core; PFAM: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, core YP_004792067.1 TIGRFAM: Pseudouridine synthase, TruD; HAMAP: tRNA pseudouridine synthase D; KEGG: sml:Smlt1719 tRNA pseudouridine synthase D; PFAM: Pseudouridine synthase, TruD YP_004792068.1 KEGG: sml:Smlt1720 Smr DNA repair family protein; PFAM: Smr protein/MutS2 C-terminal; SMART: Smr protein/MutS2 C-terminal YP_004792069.1 PFAM: Survival protein SurE-like phosphatase/nucleotidase; TIGRFAM: Survival protein SurE-like phosphatase/nucleotidase; HAMAP: Multifunctional protein surE; KEGG: smt:Smal_1458 stationary phase survival protein SurE YP_004792070.1 PFAM: Protein-L-isoaspartate(D-aspartate) O-methyltransferase; TIGRFAM: Protein-L-isoaspartate(D-aspartate) O-methyltransferase; HAMAP: Protein-L-isoaspartate O-methyltransferase; KEGG: sml:Smlt1722 L-isoaspartate O-methyltransferase YP_004792071.1 KEGG: sml:Smlt1723 transmembrane protein YP_004792072.1 KEGG: sml:Smlt1724 subfamily M23B unassigned peptidase; PFAM: Peptidase M23; Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding Lysin subgroup YP_004792073.1 KEGG: smt:Smal_1463 hypothetical protein YP_004792074.1 PFAM: Protein of unknown function DUF498; KEGG: smt:Smal_1464 hypothetical protein YP_004792075.1 KEGG: smt:Smal_1465 hypothetical protein; TIGRFAM: RNA-binding, CRM domain, prokaryote; PFAM: RNA-binding, CRM domain YP_004792076.1 KEGG: sml:Smlt1728 cell division protein; HAMAP: Ribosomal RNA large subunit methyltransferase E; PFAM: Ribosomal RNA methyltransferase RrmJ/FtsJ YP_004792077.1 SMART: ATPase, AAA+ type, core; TIGRFAM: Peptidase M41, FtsH; KEGG: smt:Smal_1467 ATP-dependent metalloprotease FtsH; PFAM: Peptidase M41; ATPase, AAA-type, core; Peptidase M41, FtsH extracellular YP_004792078.1 KEGG: smt:Smal_1468 hypothetical protein YP_004792079.1 KEGG: bps:BPSS2148a transposase; manually curated; PFAM: Transposase IS3/IS911 YP_004792080.1 TIGRFAM: Dihydropteroate synthase; KEGG: sml:Smlt1734 dihydropteroate synthase; PFAM: Dihydropteroate synthase, DHPS YP_004792081.1 PFAM: tRNA isopentenyltransferase; TIGRFAM: tRNA delta(2)-isopentenylpyrophosphate transferase; KEGG: sml:Smlt1735 tRNA delta(2)-isopentenylpyrophosphate transferase; HAMAP: tRNA dimethylallyltransferase YP_004792082.1 TIGRFAM: Host factor Hfq; HAMAP: Protein hfq; KEGG: smt:Smal_1471 RNA-binding protein Hfq; PFAM: Like-Sm ribonucleoprotein, core YP_004792083.1 KEGG: sml:Smlt1737 GTP-binding phage-like protein; TIGRFAM: GTP-binding protein, HflX; Small GTP-binding protein; PFAM: GTP-binding protein, HSR1-related YP_004792084.1 KEGG: smt:Smal_1473 CinA domain-containing protein; TIGRFAM: CinA, C-terminal; PFAM: CinA, C-terminal YP_004792085.1 KEGG: smt:Smal_1474 2-polyprenylphenol 6-hydroxylase; TIGRFAM: 2-polyprenylphenol 6-hydroxylase; PFAM: ABC-1; Aminoglycoside phosphotransferase YP_004792086.1 TIGRFAM: Peptidase S24, LexA repressor; HAMAP: LexA repressor; KEGG: smt:Smal_1475 LexA repressor; PFAM: LexA DNA-binding region; Peptidase S24/S26A/S26B, conserved region YP_004792087.1 SMART: ATPase, AAA+ type, core; TIGRFAM: DNA recombination and repair protein RecA; KEGG: sml:Smlt1741 recombinase A; HAMAP: DNA recombination and repair protein RecA; PFAM: DNA recombination and repair protein RecA YP_004792088.1 KEGG: sml:Smlt1742 recombination regulator RecX; HAMAP: Regulatory protein recX; PFAM: Regulatory protein RecX YP_004792089.1 KEGG: sml:Smlt1743 alanyl-tRNA synthetase; TIGRFAM: Alanyl-tRNA synthetase, class IIc; PFAM: Alanyl-tRNA synthetase, class IIc, N-terminal; Threonyl/alanyl tRNA synthetase, SAD; Phosphoesterase, DHHA1 YP_004792090.1 TIGRFAM: Carbon storage regulator; HAMAP: Carbon storage regulator; KEGG: smt:Smal_1479 carbon starvation protein CstA; PFAM: Carbon storage regulator YP_004792091.1 PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: smt:Smal_1480 TonB-dependent receptor YP_004792092.1 KEGG: sml:Smlt1747 hypothetical protein YP_004792093.1 TIGRFAM: 2-oxo-acid dehydrogenase E1 component homodimeric type; KEGG: smt:Smal_1488 2-oxoacid dehydrogenase subunit E1; PFAM: Transketolase, N-terminal YP_004792094.1 KEGG: sml:Smlt1750 ECF family sigma factor; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2 YP_004792095.1 PFAM: FecR protein; KEGG: sml:Smlt1751 transmembrane FecR sensor protein YP_004792096.1 KEGG: smt:Smal_1492 TonB-dependent receptor; TIGRFAM: Bacterial TonB-dependent receptor; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug YP_004792097.1 KEGG: sml:Smlt1754 alkaline phosphatase; PFAM: Alkaline phosphatase D-related YP_004792098.1 TIGRFAM: Phospholipase C, phosphocholine-specific; Twin-arginine translocation pathway, signal sequence; KEGG: smt:Smal_1494 phosphocholine-specific phospholipase C; PFAM: Phosphoesterase; Protein of unknown function DUF756 YP_004792099.1 PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: smt:Smal_1495 TonB-dependent receptor YP_004792100.1 KEGG: sml:Smlt1757 cytochrome c family protein YP_004792101.1 KEGG: sml:Smlt1758 alcohol dehydrogenase cytochrome c subunit; PFAM: Cytochrome c, class I YP_004792102.1 PFAM: Alpha/beta hydrolase fold-1; KEGG: sml:Smlt1759 exported alpha/beta hydrolase fold protein YP_004792103.1 KEGG: sml:Smlt1760 transmembrane major facilitator superfamily transporter protein; manually curated; PFAM: Major facilitator superfamily MFS-1 YP_004792104.1 KEGG: smt:Smal_1500 esterase/lipase/thioesterase domain-containing protein YP_004792105.1 KEGG: smt:Smal_1501 TonB-dependent siderophore receptor; TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug YP_004792106.1 PFAM: Pirin, N-terminal; KEGG: smt:Smal_1502 pirin domain-containing protein YP_004792107.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: sml:Smlt1764 LysR family transcriptional regulator YP_004792108.1 TIGRFAM: Phosphomethylpyrimidine kinase type-2; KEGG: sml:Smlt1767 phosphomethylpyrimidine kinase; PFAM: Phosphomethylpyrimidine kinase type-1 YP_004792109.1 PFAM: Protein of unknown function DUF1275; KEGG: sml:Smlt1768 transmembrane protein YP_004792110.1 KEGG: smt:Smal_1507 hypothetical protein YP_004792111.1 KEGG: sml:Smlt1770 hypothetical protein; PFAM: PhoH-like protein; SMART: Nucleotide binding protein, PINc YP_004792112.1 PFAM: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; KEGG: sml:Smlt1771 AhpC/TSA family protein YP_004792113.1 PFAM: Amino acid-binding ACT; KEGG: sml:Smlt1772 glycine cleavage system transcriptional repressor YP_004792114.1 TIGRFAM: Dihydrodipicolinate synthase subfamily; HAMAP: Dihydrodipicolinate synthase; KEGG: sml:Smlt1773 dihydrodipicolinate synthase; PFAM: Dihydrodipicolinate synthetase YP_004792115.1 KEGG: sml:Smlt1774 hypothetical protein YP_004792116.1 PFAM: 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; KEGG: sml:Smlt1774B ferredoxin YP_004792117.1 KEGG: sml:Smlt1775 major facilitator superfamily transmembrane sugar transporter; TIGRFAM: Sugar/inositol transporter; PFAM: General substrate transporter YP_004792118.1 TIGRFAM: Poly(A) polymerase, PcnB; KEGG: sml:Smlt1777 poly(A) polymerase; PFAM: Polynucleotide adenylyltransferase region YP_004792119.1 TIGRFAM: 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK; KEGG: sml:Smlt1778 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK YP_004792120.1 PFAM: Ketopantoate hydroxymethyltransferase; TIGRFAM: Ketopantoate hydroxymethyltransferase; HAMAP: Ketopantoate hydroxymethyltransferase; KEGG: smt:Smal_1517 3-methyl-2-oxobutanoate hydroxymethyltransferase YP_004792121.1 TIGRFAM: Pantoate-beta-alanine ligase; HAMAP: Pantoate-beta-alanine ligase; KEGG: sml:Smlt1780 pantoate--beta-alanine ligase; PFAM: Pantoate-beta-alanine ligase YP_004792122.1 KEGG: smt:Smal_1519 hypothetical protein YP_004792123.1 TIGRFAM: Aspartate decarboxylase; KEGG: sml:Smlt1782 aspartate alpha-decarboxylase; PFAM: Aspartate decarboxylase YP_004792124.1 HAMAP: Phosphoglucose isomerase (PGI); KEGG: sml:Smlt1783 glucose-6-phosphate isomerase; PFAM: Phosphoglucose isomerase (PGI) YP_004792125.1 KEGG: smt:Smal_1522 two component fis family transcriptional regulator; PFAM: Signal transduction response regulator, receiver region; Helix-turn-helix, Fis-type; SMART: Signal transduction response regulator, receiver region YP_004792126.1 KEGG: smt:Smal_1523 integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase-like; SMART: ATP-binding region, ATPase-like YP_004792127.1 TIGRFAM: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type; HAMAP: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type; KEGG: sml:Smlt1786 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; PFAM: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type YP_004792128.1 KEGG: smt:Smal_1525 PA-phosphatase-like phosphoesterase; PFAM: Phosphatidic acid phosphatase type 2/haloperoxidase; SMART: Phosphatidic acid phosphatase type 2/haloperoxidase YP_004792129.1 KEGG: smt:Smal_1526 two component LuxR family transcriptional regulator; PFAM: Signal transduction response regulator, receiver region; Transcription regulator LuxR, C-terminal; SMART: Signal transduction response regulator, receiver region; Transcription regulator LuxR, C-terminal YP_004792130.1 TIGRFAM: KDPG/KHG aldolase; KEGG: sml:Smlt1789 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; PFAM: KDPG/KHG aldolase YP_004792131.1 TIGRFAM: 6-phosphogluconate dehydratase; KEGG: sml:Smlt1790 phosphogluconate dehydratase; PFAM: Dihydroxy-acid/6-phosphogluconate dehydratase YP_004792132.1 KEGG: smt:Smal_1529 6-phosphogluconolactonase; TIGRFAM: 6-phosphogluconolactonase YP_004792133.1 PFAM: Glucokinase; TIGRFAM: Glucokinase; HAMAP: Glucokinase; KEGG: smt:Smal_1530 glucokinase YP_004792134.1 TIGRFAM: Glucose-6-phosphate dehydrogenase; KEGG: sml:Smlt1793 glucose-6-phosphate 1-dehydrogenase; PFAM: Glucose-6-phosphate dehydrogenase YP_004792135.1 PFAM: ABC transporter-like; Transport-associated OB, type 2; KEGG: sml:Smlt1794 ABC transporter ATP-binding subunit; SMART: ATPase, AAA+ type, core YP_004792136.1 KEGG: sml:Smlt1795 aminomethyl transferase; TIGRFAM: Folate-binding, YgfZ; PFAM: Glycine cleavage T-protein, N-terminal; Glycine cleavage T-protein, C-terminal barrel YP_004792137.1 KEGG: smt:Smal_1535 succinate dehydrogenase, cytochrome b556 subunit; TIGRFAM: Succinate dehydrogenase, cytochrome b556 subunit; PFAM: Succinate dehydrogenase, cytochrome b subunit YP_004792138.1 KEGG: sml:Smlt1797 succinate dehydrogenase hydrophobic membrane anchor subunit; TIGRFAM: Succinate dehydrogenase, hydrophobic membrane anchor; PFAM: Succinate dehydrogenase, cytochrome b subunit YP_004792139.1 TIGRFAM: Succinate dehydrogenase, flavoprotein subunit; Succinate dehydrogenase/fumarate reductase, flavoprotein subunit; KEGG: sml:Smlt1798 succinate dehydrogenase flavoprotein subunit; PFAM: Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal; Fumarate reductase/succinate dehydrogenase flavoprotein, C-terminal YP_004792140.1 TIGRFAM: Succinate dehydrogenase/fumarate reductase iron-sulphur protein; KEGG: smt:Smal_1538 succinate dehydrogenase iron-sulfur subunit; PFAM: Ferredoxin YP_004792141.1 PFAM: Protein of unknown function DUF339; KEGG: sml:Smlt1800 TPR repeat-containing protein YP_004792142.1 KEGG: smt:Smal_1540 hypothetical protein YP_004792143.1 KEGG: sml:Smlt1802 lipoprotein releasing system transmembrane protein; TIGRFAM: Lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: Protein of unknown function DUF214, permase predicted YP_004792144.1 SMART: ATPase, AAA+ type, core; TIGRFAM: Lipoprotein releasing system, ATP-binding protein; KEGG: sml:Smlt1803 ABC transporter ATP-binding subunit; PFAM: ABC transporter-like YP_004792145.1 KEGG: sml:Smlt1804 hypothetical protein YP_004792146.1 KEGG: sml:Smlt1805 hypothetical protein; HAMAP: Fe(II) trafficking protein YggX; PFAM: Fe(II) trafficking protein YggX YP_004792147.1 TIGRFAM: A/G-specific adenine glycosylase MutY, bacterial form; PFAM: HhH-GPD domain; Endonuclease III-like, iron-sulphur cluster loop motif; NUDIX hydrolase domain; KEGG: smt:Smal_1545 A/G-specific adenine glycosylase; SMART: HhH-GPD domain YP_004792148.1 TIGRFAM: Cell division transporter substrate-binding protein FtsY; PFAM: Signal recognition particle, SRP54 subunit, GTPase; Signal recognition particle, SRP54 subunit, helical bundle; KEGG: smt:Smal_1546 signal recognition particle-docking protein FtsY; SMART: ATPase, AAA+ type, core YP_004792149.1 PFAM: Protein of unknown function DUF1078, C-terminal; KEGG: sml:Smlt1808 hypothetical protein YP_004792150.1 HAMAP: Chaperone protein htpG; PFAM: Heat shock protein Hsp90, C-terminal; ATP-binding region, ATPase-like; KEGG: sml:Smlt1809 heat shock protein 90; SMART: ATP-binding region, ATPase-like YP_004792151.1 TIGRFAM: Conserved hypothetical protein CHP00095; KEGG: sml:Smlt1810 hypothetical protein; PFAM: Protein of unknown function methylase YP_004792152.1 PFAM: Cytidylyltransferase; TIGRFAM: Coenzyme A biosynthesis protein; Cytidyltransferase-related; HAMAP: Coenzyme A biosynthesis protein; KEGG: sml:Smlt1811 phosphopantetheine adenylyltransferase YP_004792153.1 KEGG: smt:Smal_1551 hypothetical protein YP_004792154.1 PFAM: 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; KEGG: smt:Smal_1552 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein YP_004792155.1 TIGRFAM: Gamma-glutamyltranspeptidase; KEGG: sml:Smlt1814 gamma-glutamyltranspeptidase; PFAM: Gamma-glutamyltranspeptidase YP_004792156.1 manually curated; KEGG: sml:Smlt1815 metallo-beta-lactamase superfamily protein YP_004792157.1 PFAM: PsiF; KEGG: sml:Smlt1816 starvation-inducible protein YP_004792158.1 KEGG: sml:Smlt1817 ArsR family transcriptional regulator; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR YP_004792159.1 PFAM: Activator of Hsp90 ATPase homologue 1-like; KEGG: sml:Smlt1818 HSP90 family heat shock chaperone protein YP_004792160.1 KEGG: smt:Smal_1556 uracil phosphoribosyltransferase; TIGRFAM: Uracil phosphoribosyl transferase; PFAM: Phosphoribosyltransferase YP_004792161.1 KEGG: smt:Smal_1557 TonB-dependent receptor; TIGRFAM: Bacterial TonB-dependent receptor; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug YP_004792162.1 PFAM: NHL repeat; KEGG: sml:Smlt1821 hypothetical protein YP_004792163.1 PFAM: Metallophosphoesterase; KEGG: sml:Smlt1822 phosphoesterase YP_004792164.1 HAMAP: Inorganic pyrophosphatase; KEGG: sml:Smlt1823 inorganic pyrophosphatase; PFAM: Inorganic pyrophosphatase YP_004792165.1 PFAM: DNA photolyase, FAD-binding/Cryptochrome, C-terminal; DNA photolyase, N-terminal; KEGG: sml:Smlt1825 DNA photolyase YP_004792166.1 PFAM: Outer membrane protein, OmpA/MotB, C-terminal; Rickettsia 17kDa surface antigen; KEGG: sml:Smlt1826 outer membrane lipoprotein YP_004792167.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: sml:Smlt1827 LysR family transcriptional regulator YP_004792168.1 KEGG: smt:Smal_1565 hypothetical protein YP_004792169.1 PFAM: NADP oxidoreductase, coenzyme F420-dependent; KEGG: smt:Smal_1566 short-chain dehydrogenase/reductase SDR YP_004792170.1 KEGG: smt:Smal_1567 RND family efflux transporter MFP subunit; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD YP_004792171.1 KEGG: sml:Smlt1831 drug resistance membrane fusion protein; TIGRFAM: Hydrophobe/amphiphile efflux-1 HAE1; PFAM: Acriflavin resistance protein YP_004792172.1 KEGG: smt:Smal_1569 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR YP_004792173.1 KEGG: smt:Smal_1570 NodT family RND efflux system outer membrane lipoprotein; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT; PFAM: Outer membrane efflux protein YP_004792174.1 KEGG: smt:Smal_1571 hypothetical protein YP_004792175.1 PFAM: Endonuclease/exonuclease/phosphatase; KEGG: sml:Smlt1836 hypothetical protein YP_004792177.1 PFAM: Cytochrome P450; KEGG: smt:Smal_1573 cytochrome P450 YP_004792178.1 TIGRFAM: Transcription regulator LuxR, chaperone HchA-associated; PFAM: Transcription regulator LuxR, C-terminal; Autoinducer-binding; KEGG: smt:Smal_1575 LuxR family transcriptional regulator; SMART: Transcription regulator LuxR, C-terminal YP_004792179.1 PFAM: ThiJ/PfpI; KEGG: smt:Smal_1576 chaperone protein HchA YP_004792181.1 PFAM: Cytochrome P450; KEGG: smt:Smal_1573 cytochrome P450 YP_004792182.1 PFAM: Protein of unknown function DUF676, hydrolase-like; KEGG: sml:Smlt1841 hypothetical protein YP_004792183.1 KEGG: smt:Smal_1579 hypothetical protein YP_004792184.1 KEGG: smt:Smal_1580 hypothetical protein YP_004792185.1 PFAM: GCN5-related N-acetyltransferase; KEGG: smt:Smal_1588 GCN5-related N-acetyltransferase YP_004792186.1 KEGG: smt:Smal_1589 hypothetical protein YP_004792187.1 PFAM: GCN5-related N-acetyltransferase; KEGG: vap:Vapar_4148 GCN5-related N-acetyltransferase YP_004792188.1 KEGG: sml:Smlt1983 SsrA-binding protein; TIGRFAM: SsrA-binding protein; PFAM: SsrA-binding protein YP_004792189.1 PFAM: Streptomyces cyclase/dehydrase; KEGG: sml:Smlt1983A hypothetical protein YP_004792190.1 PFAM: Uncharacterised protein family UPF0125; KEGG: smt:Smal_1592 hypothetical protein YP_004792191.1 PFAM: SmpA/OmlA; KEGG: sml:Smlt1985 outer membrane lipoprotein YP_004792192.1 PFAM: Ferric-uptake regulator; KEGG: smt:Smal_1594 Fur family ferric uptake regulator YP_004792193.1 PFAM: Lipase, GDSL; KEGG: sml:Smlt1987 GDSL-like lipase/acylhydrolase YP_004792194.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: sml:Smlt1988 LysR family transcriptional regulator YP_004792195.1 KEGG: smt:Smal_1597 DNA repair protein RecN; TIGRFAM: DNA recombination/repair protein RecN; PFAM: RecF/RecN/SMC protein, N-terminal YP_004792196.1 KEGG: sml:Smlt1990 heat-inducible transcription repressor; TIGRFAM: Negative regulator of class I heat shock protein; PFAM: Negative regulator of class I heat shock protein YP_004792197.1 KEGG: sml:Smlt1991 heat shock protein GrpE; HAMAP: GrpE nucleotide exchange factor; PFAM: GrpE nucleotide exchange factor YP_004792198.1 TIGRFAM: Chaperone DnaK; HAMAP: Chaperone DnaK; KEGG: sml:Smlt1992 molecular chaperone DnaK; PFAM: Heat shock protein 70 YP_004792199.1 SMART: Heat shock protein DnaJ, N-terminal; TIGRFAM: Chaperone DnaJ; KEGG: sml:Smlt1993 chaperone protein DnaJ; HAMAP: Chaperone protein dnaJ; PFAM: Chaperone DnaJ, C-terminal; Heat shock protein DnaJ, N-terminal; Heat shock protein DnaJ, cysteine-rich region YP_004792200.1 KEGG: smt:Smal_1602 AraC family transcriptional regulator; PFAM: AraC protein, arabinose-binding/dimerisation; Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain YP_004792201.1 PFAM: Major facilitator superfamily MFS-1; KEGG: smt:Smal_1603 major facilitator superfamily protein YP_004792202.1 TIGRFAM: Pyridoxal phosphate (active vitamin B6) biosynthesis, pyridoxal kinase; KEGG: smt:Smal_1604 pyridoxal kinase; PFAM: Phosphomethylpyrimidine kinase type-1 YP_004792203.1 PFAM: Prephenate dehydrogenase; Amino acid-binding ACT; KEGG: sml:Smlt1998 prephenate dehydrogenase YP_004792204.1 KEGG: sml:Smlt2000 hypothetical protein YP_004792205.1 SMART: ATPase, AAA+ type, core; TIGRFAM: ABC transporter, ATP-binding/permease protein; KEGG: smt:Smal_1607 lipid A ABC exporter family, fused ATPase and inner membrane subunits; PFAM: ABC transporter-like; ABC transporter, transmembrane region YP_004792206.1 PFAM: Uncharacterised protein family UPF0029, Impact, N-terminal; Uncharacterised protein family UPF0029, Impact, C-terminal; KEGG: smt:Smal_1608 hypothetical protein YP_004792207.1 KEGG: sml:Smlt2003 proline/alanine-rich repetetive membrane anchored protein YP_004792208.1 KEGG: sml:Smlt2004 RNA polymerase sigma factor; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 4; RNA polymerase sigma-70 region 2 YP_004792209.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; GAF; KEGG: smt:Smal_1611 diguanylate cyclase/phosphodiesterase with GAF sensor; SMART: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; GAF YP_004792210.1 KEGG: sml:Smlt2006 lysine decarboxylase; TIGRFAM: Conserved hypothetical protein CHP00730; PFAM: Conserved hypothetical protein CHP00730 YP_004792211.1 KEGG: sml:Smlt2007 aminotransferase; PFAM: Aminotransferase class-III YP_004792212.1 TIGRFAM: Queuosine biosynthesis protein; HAMAP: S-adenosylmethionine:tRNA ribosyltransferase-isomerase; KEGG: sml:Smlt2008 S-adenosylmethionine:tRNA ribosyltransferase-isomerase; PFAM: Queuosine biosynthesis protein YP_004792213.1 TIGRFAM: Queuine tRNA-ribosyltransferase; Queuine/other tRNA-ribosyltransferase; KEGG: sml:Smlt2009 queuine tRNA-ribosyltransferase; PFAM: Queuine/other tRNA-ribosyltransferase YP_004792214.1 KEGG: smt:Smal_1616 preprotein translocase subunit YajC; TIGRFAM: YajC; PFAM: YajC YP_004792215.1 KEGG: sml:Smlt2011 preprotein translocase subunit SecD; TIGRFAM: SecD export membrane protein; SecD/SecF/SecDF export membrane protein; PFAM: SecD/SecF/SecDF export membrane protein YP_004792216.1 KEGG: smt:Smal_1618 preprotein translocase subunit SecF; TIGRFAM: SecF protein; PFAM: SecD/SecF/SecDF export membrane protein YP_004792217.1 KEGG: bps:BPSS2148a transposase; manually curated; PFAM: Transposase IS3/IS911 YP_004792218.1 HAMAP: Uncharacterised protein family, TER reductase; KEGG: sml:Smlt2015 trans-2-enoyl-CoA reductase; PFAM: Uncharacterised protein family, TER reductase YP_004792219.1 TIGRFAM: Diguanylate cyclase, predicted; PAS; PFAM: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; KEGG: smt:Smal_1620 response regulator receiver modulated PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase; SMART: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted YP_004792220.1 KEGG: sml:Smlt2017 hypothetical protein; TIGRFAM: HI0933-like protein; PFAM: HI0933-like protein YP_004792221.1 PFAM: YaeQ; KEGG: smt:Smal_1622 YaeQ family protein YP_004792222.1 PFAM: Pseudouridine synthase, RsuA and RluB/C/D/E/F; KEGG: smt:Smal_1623 pseudouridine synthase YP_004792223.1 KEGG: smt:Smal_1624 hypothetical protein; HAMAP: Protein of unknown function DUF188; PFAM: Protein of unknown function DUF188 YP_004792224.1 KEGG: smt:Smal_1625 cold-shock DNA-binding domain-containing protein; PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein YP_004792225.1 PFAM: Glutathione S-transferase, N-terminal; Glutathione S-transferase, C-terminal; KEGG: sml:Smlt2023 glutathione S-transferase YP_004792226.1 KEGG: smt:Smal_1627 hypothetical protein; HAMAP: UPF0061 protein ydiU; PFAM: Uncharacterised protein family UPF0061 YP_004792227.1 TIGRFAM: Adenine phosphoribosyl transferase; HAMAP: Adenine phosphoribosyl transferase; KEGG: smt:Smal_1628 adenine phosphoribosyltransferase; PFAM: Phosphoribosyltransferase YP_004792228.1 KEGG: smt:Smal_1629 ATP-dependent RNA helicase DbpA; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; DNA/RNA helicase, C-terminal; DbpA, RNA-binding; SMART: DEAD-like helicase, N-terminal; ATPase, AAA+ type, core; DNA/RNA helicase, C-terminal YP_004792230.1 PFAM: Uncharacterised protein family UPF0167; KEGG: pwa:Pecwa_4466 hypothetical protein YP_004792231.1 KEGG: sml:Smlt2028 transmembrane protein; TIGRFAM: Uncharacterised protein family UPF0324, bacteria; PFAM: Uncharacterised protein family UPF0324, prokaryote YP_004792232.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: smt:Smal_1631 LysR family transcriptional regulator YP_004792233.1 KEGG: sml:Smlt2030 ABC transporter ATP-binding protein; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core YP_004792234.1 PFAM: Cytochrome c, class I; KEGG: sml:Smlt2031 cytochrome c YP_004792235.1 KEGG: sml:Smlt2032 cytochrome c YP_004792236.1 KEGG: smt:Smal_1636 RND family efflux transporter MFP subunit; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD YP_004792237.1 PFAM: Acriflavin resistance protein; KEGG: smt:Smal_1637 acriflavin resistance protein YP_004792238.1 PFAM: Acriflavin resistance protein; KEGG: sml:Smlt2035 transmembrane ACR-type efflux transport protein YP_004792239.1 KEGG: smt:Smal_1639 TraB family protein; TIGRFAM: Pheromone shutdown, TraB; PFAM: Pheromone shutdown-related, TraB YP_004792240.1 KEGG: sml:Smlt2037 acetyltransferase; PFAM: GCN5-related N-acetyltransferase YP_004792241.1 KEGG: smt:Smal_1641 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_004792242.1 PFAM: Transposase, IS116/IS110/IS902; Transposase, IS111A/IS1328/IS1533; KEGG: ppu:PP_5290 ISPpu10, transposase YP_004792243.1 KEGG: smt:Smal_1642 agmatine deiminase; PFAM: Peptidyl-arginine deiminase, Porphyromonas-type YP_004792244.1 KEGG: sml:Smlt2040 hypothetical protein YP_004792245.1 TIGRFAM: Ribosomal protein L36; HAMAP: Ribosomal protein L36; KEGG: smt:Smal_1644 50S ribosomal protein L36; PFAM: Ribosomal protein L36 YP_004792246.1 PFAM: Cytidylate kinase region; TIGRFAM: Cytidylate kinase; HAMAP: Cytidylate kinase; KEGG: smt:Smal_1645 cytidylate kinase YP_004792247.1 KEGG: sml:Smlt2043 30S ribosomal protein S1; TIGRFAM: Ribosomal S1 synthesis/modification protein; PFAM: Ribosomal protein S1, RNA binding domain YP_004792248.1 SMART: Histone-like bacterial DNA-binding protein; TIGRFAM: Integration host factor, beta subunit; KEGG: smt:Smal_1647 integration host factor subunit beta; HAMAP: Integration host factor, beta subunit; PFAM: Histone-like bacterial DNA-binding protein YP_004792249.1 KEGG: smt:Smal_1648 hypothetical protein YP_004792250.1 KEGG: sml:Smlt2046 tetratricopeptide repeat-containing protein YP_004792251.1 PFAM: Glycosyl transferase, family 4, conserved region; KEGG: smt:Smal_1650 glycosyl transferase family 4 YP_004792252.1 PFAM: Polysaccharide biosynthesis protein CapD-like; KEGG: smt:Smal_1651 polysaccharide biosynthesis protein CapD YP_004792253.1 TIGRFAM: UTP--glucose-1-phosphate uridylyltransferase, bacterial/archaeal type; KEGG: smt:Smal_1652 UTP-glucose-1-phosphate uridylyltransferase; PFAM: Nucleotidyl transferase YP_004792254.1 KEGG: sml:Smlt2051 acetyl-CoA acetyltransferase; TIGRFAM: Thiolase YP_004792255.1 PFAM: 3-hydroxyacyl-CoA dehydrogenase, NAD binding; 3-hydroxyacyl-CoA dehydrogenase, C-terminal; Crotonase, core; KEGG: sml:Smlt2052 3-hydroxyacyl-CoA dehydrogenase oxidoreductase YP_004792256.1 PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: sml:Smlt2053 TetR family regulatory protein YP_004792257.1 SMART: Nucleoside diphosphate kinase, core; HAMAP: Nucleoside diphosphate kinase; KEGG: smt:Smal_1656 nucleoside diphosphate kinase; PFAM: Nucleoside diphosphate kinase, core YP_004792258.1 TIGRFAM: Ribosomal RNA large subunit methyltransferase RlmN; HAMAP: Ribosomal RNA large subunit methyltransferase RlmN; KEGG: sml:Smlt2055 SAM methylase protein; PFAM: Radical SAM YP_004792259.1 TIGRFAM: Pilus biogenesis/stability type IV, PilW; KEGG: smt:Smal_1658 type IV pilus biogenesis/stability protein PilW YP_004792260.1 SMART: Helix-turn-helix type 3; KEGG: sml:Smlt2057 transmembrane protein YP_004792261.1 PFAM: Protein of unknown function DUF2133; KEGG: smt:Smal_1660 hypothetical protein YP_004792262.1 TIGRFAM: Outer membrane assembly lipoprotein YfgL; PFAM: Pyrrolo-quinoline quinone repeat; KEGG: smt:Smal_1661 outer membrane assembly lipoprotein YfgL; SMART: Pyrrolo-quinoline quinone beta-propeller repeat YP_004792263.1 TIGRFAM: GTP-binding, EngA; Small GTP-binding protein; HAMAP: GTP-binding, EngA; KEGG: sml:Smlt2060 GTP-binding protein EngA; PFAM: GTP-binding protein, HSR1-related YP_004792264.1 KEGG: smt:Smal_1666 molybdopterin biosynthesis protein MoeB; PFAM: UBA/THIF-type NAD/FAD binding fold; Rhodanese-like; MoeZ/MoeB; SMART: Rhodanese-like YP_004792265.1 KEGG: smt:Smal_1668 potassium efflux system protein; TIGRFAM: K+/H+ exchanger; PFAM: Cation/H+ exchanger; Regulator of K+ conductance, N-terminal YP_004792266.1 HAMAP: Tetrahydrofolate dehydrogenase/cyclohydrolase; KEGG: smt:Smal_1669 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/5,10-methylene-tetrahydrofolate cyclohydrolase; PFAM: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain YP_004792267.1 SMART: Cystathionine beta-synthase, core; TIGRFAM: IMP dehydrogenase; KEGG: sml:Smlt2071 inosine 5'-monophosphate dehydrogenase; PFAM: IMP dehydrogenase/GMP reductase; Cystathionine beta-synthase, core YP_004792268.1 KEGG: smt:Smal_1671 hypothetical protein YP_004792269.1 PFAM: GMP synthase, C-terminal; Glutamine amidotransferase class-I, C-terminal; tRNA methyl transferase-like; TIGRFAM: GMP synthase, C-terminal; GMP synthase, N-terminal; HAMAP: GMP synthase [glutamine-hydrolyzing]; KEGG: sml:Smlt2072 GMP synthase YP_004792270.1 KEGG: xcv:XCV2165 DNA methylase YP_004792271.1 KEGG: xcv:XCV2166 hypothetical protein YP_004792272.1 PFAM: helicase A859L; KEGG: pau:PA14_15600 hypothetical protein YP_004792273.1 KEGG: bpa:BPP1266 hypothetical protein YP_004792274.1 KEGG: smt:Smal_1677 hypothetical protein YP_004792275.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: sml:Smlt2080 LysR family transcriptional regulator YP_004792276.1 PFAM: ThiJ/PfpI; KEGG: sml:Smlt2081 ThiJ/PfpI family protein YP_004792277.1 KEGG: smt:Smal_1680 hypothetical protein YP_004792278.1 KEGG: sml:Smlt2083 transmembrane protein YP_004792279.1 PFAM: Zeta toxin; KEGG: xcb:XC_0701 hypothetical protein YP_004792280.1 KEGG: xca:xccb100_0735 hypothetical protein YP_004792281.1 KEGG: smt:Smal_1681 hypothetical protein YP_004792282.1 TIGRFAM: 3-hydroxybutyrate dehydrogenase; KEGG: smt:Smal_1682 3-hydroxybutyrate dehydrogenase; PFAM: Short-chain dehydrogenase/reductase SDR YP_004792283.1 PFAM: Protein of unknown function DUF347; KEGG: sml:Smlt2085 transmembrane protein YP_004792284.1 KEGG: sml:Smlt2086 hydrolase YP_004792285.1 PFAM: Alpha/beta hydrolase fold-1; KEGG: bav:BAV1606 carboxylesterase YP_004792286.1 TIGRFAM: Excisionase/Xis, DNA-binding; KEGG: bav:BAV1607 phage excisionase YP_004792287.1 PFAM: Activator of Hsp90 ATPase homologue 1-like; KEGG: smt:Smal_1683 activator of HSP90 ATPase 1 family protein YP_004792288.1 KEGG: sml:Smlt2090 ArsR family regulatory protein; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR YP_004792289.1 PFAM: Activator of Hsp90 ATPase homologue 1-like; KEGG: sml:Smlt2091 HSP90 ATPase like protein YP_004792290.1 PFAM: GCN5-related N-acetyltransferase; KEGG: sml:Smlt2092 acetyltransferase YP_004792291.1 PFAM: Streptococcal 67kDa myosin-cross-reactive antigen like; KEGG: sml:Smlt2093 myosin-cross-reactive antigen YP_004792292.1 KEGG: smt:Smal_1691 hypothetical protein YP_004792293.1 KEGG: smt:Smal_1692 AraC family transcriptional regulator; PFAM: ThiJ/PfpI; Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain YP_004792294.1 PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: smt:Smal_1693 TonB-dependent receptor YP_004792295.1 KEGG: sml:Smlt2100 NAD(P)H-dependent FMN reductase; TIGRFAM: FMN reductase, MsuE-like; PFAM: NADPH-dependent FMN reductase YP_004792296.1 KEGG: smt:Smal_1695 hypothetical protein YP_004792297.1 KEGG: smt:Smal_1696 luciferase-like monooxygenase; TIGRFAM: Luciferase family oxidoreductase, group 1; PFAM: Luciferase-like, subgroup YP_004792298.1 TIGRFAM: FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family; KEGG: smt:Smal_1697 flavin-dependent oxidoreductase YP_004792299.1 TIGRFAM: Peptidase M20D, amidohydrolase; KEGG: smt:Smal_1698 amidohydrolase; PFAM: Peptidase M20; Peptidase M20, dimerisation YP_004792300.1 PFAM: GCN5-related N-acetyltransferase; KEGG: smt:Smal_1699 GCN5-related N-acetyltransferase YP_004792301.1 SMART: ATPase, AAA+ type, core; TIGRFAM: Amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine; KEGG: smt:Smal_1700 polar amino acid ABC transporter inner membrane subunit; PFAM: ABC transporter-like; Binding-protein-dependent transport systems inner membrane component YP_004792302.1 KEGG: smt:Smal_1701 family 3 extracellular solute-binding protein; PFAM: Extracellular solute-binding protein, family 3; SMART: Extracellular solute-binding protein, family 3 YP_004792303.1 PFAM: Coagulation factor 5/8 type, C-terminal; KEGG: sml:Smlt2108 exported 5/8 type C domain-containing protein YP_004792304.1 KEGG: sml:Smlt2111 hypothetical protein YP_004792305.1 PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: sml:Smlt2112 TetR family transcriptional regulator YP_004792306.1 KEGG: smt:Smal_1710 diguanylate phosphodiesterase; PFAM: Diguanylate phosphodiesterase, predicted; SMART: Diguanylate phosphodiesterase, predicted YP_004792307.1 PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: sml:Smlt2116 dehydrogenase/reductase YP_004792308.1 PFAM: GCN5-related N-acetyltransferase; KEGG: smt:Smal_1714 acetyltransferase YP_004792309.1 KEGG: sml:Smlt2120 aminoglycoside 3'-phosphotransferase; PFAM: Aminoglycoside phosphotransferase YP_004792310.1 PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: smt:Smal_1719 TetR family transcriptional regulator YP_004792311.1 KEGG: sml:Smlt2124 transmembrane protein YP_004792312.1 PFAM: Aminoglycoside phosphotransferase; KEGG: sml:Smlt2125 spectinomycin phosphotransferase YP_004792313.1 PFAM: Protein of unknown function DUF6, transmembrane; KEGG: sml:Smlt2126 transmembrane protein YP_004792314.1 TIGRFAM: UDP-N-acetylenolpyruvoylglucosamine reductase; HAMAP: UDP-N-acetylenolpyruvoylglucosamine reductase; KEGG: smt:Smal_1723 UDP-N-acetylenolpyruvoylglucosamine reductase; PFAM: UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal; FAD linked oxidase, N-terminal YP_004792315.1 PFAM: Dihydroorotate dehydrogenase, class 1/ 2; TIGRFAM: Dihydroorotate dehydrogenase, class 2; HAMAP: Dihydroorotate dehydrogenase; KEGG: sml:Smlt2128 dihydroorotate dehydrogenase 2 YP_004792316.1 PFAM: Methyltransferase type 11; KEGG: smt:Smal_1725 type 11 methyltransferase YP_004792317.1 KEGG: sml:Smlt2130 transmembrane protein YP_004792318.1 KEGG: smt:Smal_1727 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR YP_004792319.1 KEGG: sml:Smlt2132 aldehyde dehydrogenase; PFAM: Aldehyde dehydrogenase YP_004792320.1 manually curated; KEGG: amt:Amet_1408 hypothetical protein YP_004792322.1 KEGG: smt:Smal_2529 hypothetical protein YP_004792327.1 KEGG: smt:Smal_2524 hypothetical protein YP_004792332.1 KEGG: acm:AciX9_3650 hypothetical protein YP_004792333.1 PFAM: GCN5-related N-acetyltransferase; KEGG: aav:Aave_0714 GCN5-related N-acetyltransferase YP_004792334.1 KEGG: rlg:Rleg_5882 hypothetical protein YP_004792335.1 KEGG: rlg:Rleg_5883 protein of unknown function DUF955; PFAM: Protein of unknown function DUF955; SMART: Helix-turn-helix type 3 YP_004792336.1 KEGG: smt:Smal_1729 dihydrodipicolinate synthetase; PFAM: Dihydrodipicolinate synthetase YP_004792337.1 PFAM: GCN5-related N-acetyltransferase; KEGG: sml:Smlt2134 acetyltransferase YP_004792338.1 PFAM: GCN5-related N-acetyltransferase; KEGG: smt:Smal_1731 GCN5-related N-acetyltransferase YP_004792339.1 KEGG: sml:Smlt2136 AraC family regulatory protein; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain YP_004792340.1 PFAM: UspA; KEGG: smt:Smal_1733 UspA domain-containing protein YP_004792341.1 PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: smt:Smal_1734 transcriptional regulator NfxB YP_004792342.1 KEGG: str:Sterm_1060 conserved repeat domain protein; TIGRFAM: Protein of unknown function DUF11; PFAM: Outer membrane protein, OmpA/MotB, C-terminal; Protein of unknown function DUF11 YP_004792343.1 KEGG: vha:VIBHAR_05163 hypothetical protein YP_004792344.1 KEGG: smt:Smal_1735 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region YP_004792345.1 TIGRFAM: PAS; PFAM: ATP-binding region, ATPase-like; PAS fold; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; KEGG: smt:Smal_1736 PAS/PAC sensor signal transduction histidine kinase; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; PAS YP_004792346.1 KEGG: smt:Smal_1737 multi-sensor hybrid histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; GAF; Signal transduction response regulator, receiver region; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; GAF; Signal transduction response regulator, receiver region YP_004792347.1 KEGG: smt:Smal_1738 CheR-type MCP methyltransferase; PFAM: MCP methyltransferase, CheR-type; SMART: MCP methyltransferase, CheR-type YP_004792348.1 KEGG: smt:Smal_1739 CheB methylesterase; PFAM: Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase YP_004792349.1 KEGG: sml:Smlt2144 two component system histidine kinase/response regulator fusion protein; PFAM: Signal transduction response regulator, receiver region; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; ATP-binding region, ATPase-like; SMART: Signal transduction response regulator, receiver region; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; ATP-binding region, ATPase-like YP_004792350.1 PFAM: BLUF; KEGG: smt:Smal_1741 BLUF domain-containing protein YP_004792351.1 KEGG: smt:Smal_1742 ArsR family transcriptional regulator; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR YP_004792352.1 PFAM: Protein of unknown function DUF395, YeeE/YedE; KEGG: smt:Smal_1743 hypothetical protein YP_004792353.1 PFAM: Protein of unknown function DUF395, YeeE/YedE; KEGG: smt:Smal_1744 hypothetical protein YP_004792354.1 PFAM: Choloylglycine hydrolase; KEGG: sml:Smlt2151 choloylglycine hydrolase YP_004792355.1 KEGG: sml:Smlt2152 hypothetical protein YP_004792356.1 KEGG: smt:Smal_1747 AraC family transcriptional regulator; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain YP_004792357.1 PFAM: Protein of unknown function DUF6, transmembrane; KEGG: smt:Smal_1748 hypothetical protein YP_004792358.1 TIGRFAM: Aspartate kinase region; KEGG: sml:Smlt2156 bifunctional aspartokinase I/homeserine dehydrogenase I; PFAM: Homoserine dehydrogenase, catalytic; Aspartate/glutamate/uridylate kinase; Amino acid-binding ACT; Aspartate/homoserine dehydrogenase, NAD-binding YP_004792359.1 PFAM: GHMP kinase; GHMP kinase, C-terminal; KEGG: smt:Smal_1750 homoserine kinase YP_004792360.1 TIGRFAM: Threonine synthase; KEGG: sml:Smlt2158 threonine synthase; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit YP_004792361.1 KEGG: sml:Smlt2159 FNR/CRP family transcriptional regulator; PFAM: HTH transcriptional regulator, Crp; Cyclic nucleotide-binding; SMART: HTH transcriptional regulator, Crp; Cyclic nucleotide-binding YP_004792362.1 PFAM: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved region; Anticodon-binding; TIGRFAM: Histidyl-tRNA synthetase, class IIa, subgroup; HAMAP: Histidyl-tRNA synthetase, class IIa, subgroup; KEGG: sml:Smlt2160 histidyl-tRNA synthetase YP_004792363.1 KEGG: smt:Smal_1754 hypothetical protein YP_004792364.1 KEGG: sml:Smlt2161 hypothetical protein; TIGRFAM: TrpR homologue YerC/YecD; PFAM: Trp repressor YP_004792365.1 PFAM: ATP phosphoribosyltransferase, catalytic region; Histidine biosynthesis HisG, C-terminal; TIGRFAM: ATP phosphoribosyltransferase, catalytic region; Histidine biosynthesis HisG, C-terminal; HAMAP: Histidine biosynthesis HisG, ATP phosphoribosyltransferase, subgroup; KEGG: sml:Smlt2162 ATP phosphoribosyltransferase YP_004792366.1 PFAM: Histidinol dehydrogenase, prokaryotic-type; TIGRFAM: Histidinol dehydrogenase, prokaryotic-type; HAMAP: Histidinol dehydrogenase, prokaryotic-type; KEGG: smt:Smal_1757 histidinol dehydrogenase YP_004792367.1 PFAM: Aminotransferase, class I/II; TIGRFAM: Histidinol-phosphate aminotransferase; HAMAP: Histidinol-phosphate aminotransferase; KEGG: smt:Smal_1758 histidinol-phosphate aminotransferase YP_004792368.1 PFAM: Imidazoleglycerol-phosphate dehydratase; Polynucleotide kinase 3 phosphatase, central region; TIGRFAM: Histidinol-phosphatase; Histidinol-phosphate phosphatase; HAD-superfamily hydrolase, subfamily IIIA; HAMAP: Imidazoleglycerol-phosphate dehydratase; Histidine biosynthesis bifunctional protein hisB; KEGG: smt:Smal_1759 imidazole glycerol-phosphate dehydratase/histidinol phosphatase YP_004792369.1 TIGRFAM: Imidazole glycerol phosphate synthase, subunit H; HAMAP: Imidazole glycerol phosphate synthase, subunit H; KEGG: sml:Smlt2166 imidazole glycerol phosphate synthase subunit HisH; PFAM: Glutamine amidotransferase class-I, C-terminal YP_004792370.1 PFAM: Histidine biosynthesis; TIGRFAM: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; HAMAP: 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; KEGG: smt:Smal_1761 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase YP_004792371.1 TIGRFAM: Histidine biosynthesis, HisF; HAMAP: Imidazole glycerol phosphate synthase subunit hisF; KEGG: smt:Smal_1762 imidazole glycerol phosphate synthase subunit HisF; PFAM: Histidine biosynthesis YP_004792372.1 TIGRFAM: Phosphoribosyl-ATP pyrophosphohydrolase; HAMAP: Histidine biosynthesis bifunctional protein hisIE; KEGG: sml:Smlt2169 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase protein; PFAM: Phosphoribosyl-AMP cyclohydrolase; Phosphoribosyl-ATP pyrophosphohydrolase YP_004792373.1 PFAM: Metallophosphoesterase; KEGG: smt:Smal_1764 metallophosphoesterase YP_004792374.1 KEGG: smt:Smal_1765 hypothetical protein YP_004792375.1 KEGG: smt:Smal_1766 glucokinase; PFAM: Glucokinase YP_004792376.1 KEGG: sml:Smlt2173 glycosylasparaginase; PFAM: Peptidase T2, asparaginase 2 YP_004792377.1 KEGG: smt:Smal_1768 CutC family protein; HAMAP: Copper homeostasis protein cutC; PFAM: CutC YP_004792378.1 PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: sml:Smlt2175 TonB dependent receptor protein YP_004792379.1 TIGRFAM: ATPase, P-type, heavy metal translocating; ATPase, P type, cation/copper-transporter; Copper ion-binding; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; KEGG: sml:Smlt2176 copper-transporting P-type ATPase; PFAM: ATPase, P-type, ATPase-associated region; Heavy metal transport/detoxification protein; Haloacid dehalogenase-like hydrolase YP_004792380.1 TIGRFAM: Cu(I)-responsive transcriptional regulator; PFAM: Transcription regulator MerR, DNA binding; HTH transcriptional regulator, MerR; KEGG: sml:Smlt2177 MerR family transcriptional regulator; SMART: HTH transcriptional regulator, MerR YP_004792381.1 PFAM: Heavy metal transport/detoxification protein; KEGG: sml:Smlt2178 metal-binding transport protein YP_004792382.1 KEGG: sml:Smlt2179 TonB-dependent outer membrane receptor protein; TIGRFAM: Bacterial TonB-dependent receptor; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug YP_004792383.1 KEGG: dmo:Dmoj_GI19536 GI19536 gene product from transcript GI19536-RA YP_004792384.1 KEGG: sml:Smlt2180 hypothetical protein; TIGRFAM: Alpha-1,2-mannosidase, PFAM: Glycosyl hydrolase 92 YP_004792385.1 KEGG: smt:Smal_1775 LacI family transcriptional regulator; PFAM: Periplasmic binding protein/LacI transcriptional regulator; HTH transcriptional regulator, LacI; SMART: HTH transcriptional regulator, LacI YP_004792386.1 KEGG: sml:Smlt2182 transmembrane hexose transporter; TIGRFAM: Bacterial glucose/galactose transporter; L-fucose permease; PFAM: Major facilitator superfamily MFS-1 YP_004792387.1 KEGG: sml:Smlt2183 fructokinase; PFAM: Carbohydrate/purine kinase YP_004792388.1 PFAM: N-acylglucosamine 2-epimerase; KEGG: smt:Smal_1778 N-acylglucosamine 2-epimerase YP_004792389.1 KEGG: sml:Smlt2185 beta-mannosidase; PFAM: Glycoside hydrolase family 2, carbohydrate-binding YP_004792390.1 PFAM: Haloacid dehalogenase-like hydrolase; TIGRFAM: 2,3-diketo-5-methylthio-1-phosphopentane phosphatase; HAD-superfamily hydrolase, subfamily IA, variant 1; HAMAP: Enolase-phosphatase E1; KEGG: smt:Smal_1780 2,3-diketo-5-methylthio-1-phosphopentane phosphatase YP_004792391.1 HAMAP: Acireductone dioxygenase; KEGG: smt:Smal_1781 acireductone dioxygenase ARD; PFAM: Acireductone dioxygenase, ARD YP_004792392.1 PFAM: Class II aldolase/adducin, N-terminal; TIGRFAM: Methylthioribulose-1-phosphate dehydratase; HAMAP: Methylthioribulose-1-phosphate dehydratase; KEGG: smt:Smal_1782 methylthioribulose-1-phosphate dehydratase YP_004792393.1 PFAM: Amino acid permease-associated region; KEGG: sml:Smlt2192 amino acid transporter YP_004792394.1 PFAM: Amino acid permease-associated region; KEGG: sml:Smlt2193 amino-acid transporter transmembrane protein YP_004792395.1 PFAM: NUDIX hydrolase domain; KEGG: smt:Smal_1786 NUDIX hydrolase YP_004792397.1 KEGG: smt:Smal_1787 D-3-phosphoglycerate dehydrogenase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; Amino acid-binding ACT YP_004792398.1 KEGG: sml:Smlt2196 FAD binding oxidoreductase; PFAM: FAD-linked oxidase, C-terminal; FAD linked oxidase, N-terminal YP_004792399.1 KEGG: smt:Smal_1789 hypothetical protein; TIGRFAM: Conserved hypothetical protein CHP02448; PFAM: Conserved hypothetical protein CHP02448 YP_004792400.1 KEGG: smt:Smal_1790 hypothetical protein YP_004792401.1 KEGG: sml:Smlt2199 two-component regulatory system family, sensor kinase protein; PFAM: ATP-binding region, ATPase-like; HAMP linker domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SMART: ATP-binding region, ATPase-like; HAMP linker domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region YP_004792402.1 KEGG: sml:Smlt2200 two-component regulatory system family, response regulator protein; PFAM: Signal transduction response regulator, receiver region; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver region YP_004792403.1 manually curated; TIGRFAM: Secretion protein HlyD; KEGG: smt:Smal_1793 RND family efflux transporter MFP subunit; PFAM: Secretion protein HlyD YP_004792404.1 KEGG: sml:Smlt2202 multidrug ACR family efflux system; TIGRFAM: Hydrophobe/amphiphile efflux-1 HAE1; PFAM: Acriflavin resistance protein YP_004792405.1 KEGG: sml:Smlt2203 hypothetical protein YP_004792406.1 PFAM: Protein of unknown function DUF2091, periplasmic; KEGG: sml:Smlt2204 hypothetical protein YP_004792407.1 KEGG: smt:Smal_1797 hypothetical protein YP_004792408.1 TIGRFAM: Translation elongation factor P-like, YeiP; HAMAP: Translation elongation factor P-like, YeiP; KEGG: sml:Smlt2205 elongation factor P; PFAM: Elongation factor P, C-terminal; Translation elongation factor P/YeiP, central; Translation elongation factor, KOW-like YP_004792409.1 KEGG: sml:Smlt2206 short-chain dehydrogenase family protein; PFAM: Short-chain dehydrogenase/reductase SDR YP_004792410.1 KEGG: smt:Smal_1800 pyruvate carboxyltransferase; PFAM: Pyruvate carboxyltransferase YP_004792411.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: smt:Smal_1801 glyoxalase/bleomycin resistance protein/dioxygenase YP_004792412.1 PFAM: Crotonase, core; KEGG: smt:Smal_1802 enoyl-CoA hydratase/isomerase YP_004792413.1 PFAM: Ferrous iron transporter, FeoA subunit; KEGG: smt:Smal_1803 FeoA family protein YP_004792414.1 KEGG: sml:Smlt2211 ferrous iron transport protein B; TIGRFAM: Ferrous iron transport protein B; Small GTP-binding protein; PFAM: Ferrous iron transport protein B, N-terminal; GTP-binding protein, HSR1-related; Nucleoside recognition; Ferrous iron transport protein B, C-terminal YP_004792415.1 KEGG: smt:Smal_1805 hypothetical protein YP_004792416.1 KEGG: smt:Smal_1806 hypothetical protein YP_004792417.1 PFAM: Flavodoxin-like fold; KEGG: sml:Smlt2214 flavodoxin containing oxidoreductase YP_004792418.1 KEGG: sml:Smlt2215 MerR family transcriptional regulator; PFAM: HTH transcriptional regulator, MerR; SMART: HTH transcriptional regulator, MerR YP_004792419.1 KEGG: sml:Smlt2216 3-ketoacyl-ACP reductase; PFAM: Short-chain dehydrogenase/reductase SDR YP_004792420.1 PFAM: Dihydrodipicolinate reductase; TIGRFAM: Dihydrodipicolinate reductase, bacterial/plant; HAMAP: Dihydrodipicolinate reductase; KEGG: smt:Smal_1810 dihydrodipicolinate reductase YP_004792421.1 TIGRFAM: Carbamoyl phosphate synthase, small subunit; KEGG: sml:Smlt2218 carbamoyl phosphate synthase small subunit; PFAM: Carbamoyl phosphate synthase, small subunit, N-terminal; Glutamine amidotransferase class-I, C-terminal YP_004792422.1 TIGRFAM: Carbamoyl phosphate synthase, large subunit, glutamine-dependent; KEGG: sml:Smlt2219 carbamoyl phosphate synthase large subunit; PFAM: Carbamoyl phosphate synthetase, large subunit, ATP-binding; Carbamoyl phosphate synthase, large subunit, N-terminal; Carbamoyl phosphate synthetase, large subunit, oligomerisation; MGS-like YP_004792423.1 TIGRFAM: Prokaryotic transcription elongation factor GreA; HAMAP: Transcription elongation factor greA; KEGG: sml:Smlt2220 transcription elongation factor GreA; PFAM: Transcription elongation factor, GreA/GreB region, prokaryotic YP_004792424.1 PFAM: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase; KEGG: sml:Smlt2221 hypothetical protein YP_004792425.1 KEGG: sml:Smlt2223 single-stranded-DNA-specific exonuclease; TIGRFAM: Bacterial RecJ exonuclease; PFAM: Phosphoesterase, RecJ-like; Phosphoesterase, DHHA1 YP_004792426.1 PFAM: Protein of unknown function DUF1176; KEGG: smt:Smal_1818 hypothetical protein YP_004792427.1 PFAM: Protein of unknown function DUF2135; Vault protein inter-alpha-trypsin; KEGG: smt:Smal_1819 vault protein inter-alpha-trypsin domain-containing protein YP_004792428.1 KEGG: sml:Smlt2225 transmembrane protein YP_004792429.1 PFAM: LytTr DNA-binding region; KEGG: sml:Smlt2226 transmembrane sensory transduction protein LytT YP_004792430.1 manually curated; KEGG: bpm:BURPS1710b_3602 hypothetical protein YP_004792431.1 KEGG: sml:Smlt2229 hypothetical protein; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3 YP_004792432.1 KEGG: bps:BPSS2148a transposase; manually curated; PFAM: Transposase IS3/IS911 YP_004792433.1 KEGG: smt:Smal_1825 aldehyde dehydrogenase; PFAM: Aldehyde dehydrogenase YP_004792434.1 KEGG: sml:Smlt2231 acetolactate synthase; PFAM: Thiamine pyrophosphate enzyme, C-terminal TPP-binding; Thiamine pyrophosphate enzyme, N-terminal TPP binding region; Thiamine pyrophosphate enzyme, central region YP_004792435.1 PFAM: Aminoacyl-tRNA synthetase, class II (D/K/N); Nucleic acid binding, OB-fold, tRNA/helicase-type; TIGRFAM: Lysyl-tRNA synthetase, class II; HAMAP: Lysyl-tRNA synthetase; KEGG: sml:Smlt2232 lysyl-tRNA synthetase YP_004792436.1 KEGG: smt:Smal_1828 response regulator receiver modulated metal dependent phosphohydrolase; PFAM: Signal transduction response regulator, receiver region; Metal-dependent phosphohydrolase, HD region, subdomain; SMART: Signal transduction response regulator, receiver region; Metal-dependent phosphohydrolase, HD region YP_004792437.1 KEGG: xal:XALc_1346 regulation of pathogenicity factor RpfC protein; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; Signal transduction response regulator, receiver region; Signal transduction histidine kinase, phosphotransfer (Hpt) region; SMART: Signal transduction response regulator, receiver region; ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; Signal transduction histidine kinase, phosphotransfer (Hpt) region YP_004792438.1 KEGG: ara:Arad_12046 hypothetical protein YP_004792439.1 PFAM: Crotonase, core; KEGG: xac:XAC1879 enoyl-CoA hydratase YP_004792440.1 KEGG: sml:Smlt2236a long-chain fatty acyl CoA ligase; PFAM: AMP-dependent synthetase/ligase YP_004792441.1 PFAM: Glucose-methanol-choline oxidoreductase, N-terminal; Glucose-methanol-choline oxidoreductase, C-terminal; TIGRFAM: Choline dehydrogenase; HAMAP: Choline dehydrogenase; KEGG: smt:Smal_1832 choline dehydrogenase YP_004792442.1 PFAM: Aldehyde dehydrogenase; TIGRFAM: Betaine aldehyde dehydrogenase; HAMAP: Betaine aldehyde dehydrogenase; KEGG: sml:Smlt2238 betaine aldehyde dehydrogenase YP_004792443.1 TIGRFAM: Transcriptional repressor BetI; HAMAP: HTH-type transcriptional regulator betI; KEGG: smt:Smal_1834 TetR family transcriptional regulator; PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal YP_004792444.1 KEGG: sml:Smlt2240 high-affinity choline transport protein; TIGRFAM: BCCT transporter; PFAM: BCCT transporter YP_004792446.1 TIGRFAM: Aconitase/iron regulatory protein 2; KEGG: sml:Smlt2241 aconitate hydratase; PFAM: Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha; Aconitase A/isopropylmalate dehydratase small subunit, swivel YP_004792447.1 KEGG: sml:Smlt2243 SpoVT/AbrB domain transcriptional regulator; TIGRFAM: Transcription regulator AbrB; PFAM: Transcription regulator AbrB/SpoV, predicted YP_004792448.1 KEGG: smt:Smal_1838 hypothetical protein YP_004792449.1 KEGG: smt:Smal_1839 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; TIGRFAM: Aconitase B, bacterial; PFAM: Aconitase B, N-terminal, bacterial; Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha YP_004792450.1 KEGG: ddd:Dda3937_03440 TPR repeat protein YP_004792451.1 SMART: Signal transduction response regulator, receiver region; HAMAP: Chemotaxis response regulator protein-glutamate methylesterase; KEGG: sml:Smlt2248 chemotaxis-specific methylesterase; PFAM: Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase; Signal transduction response regulator, receiver region YP_004792452.1 HAMAP: Chemoreceptor glutamine deamidase cheD; KEGG: sml:Smlt2249 chemoreceptor glutamine deamidase CheD; PFAM: Chemoreceptor glutamine deamidase cheD YP_004792453.1 PFAM: MCP methyltransferase, CheR-type; KEGG: sml:Smlt2250 chemotaxis protein methyltransferase; SMART: MCP methyltransferase, CheR-type YP_004792454.1 KEGG: sml:Smlt2251 transmembrane methyl-accepting chemotaxis protein; PFAM: Chemotaxis methyl-accepting receptor, signalling; Cache, type 2; HAMP linker domain; SMART: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain YP_004792455.1 KEGG: sml:Smlt2254 methyl-accepting chemotaxis protein; PFAM: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain; SMART: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain YP_004792456.1 KEGG: smt:Smal_1848 hypothetical protein YP_004792457.1 KEGG: sml:Smlt2256 purine binding chemotaxis protein CheW; PFAM: CheW-like protein; SMART: CheW-like protein YP_004792458.1 PFAM: YcgR; Type IV pilus assembly PilZ; KEGG: sml:Smlt2257 hypothetical protein YP_004792459.1 KEGG: sml:Smlt2258 methyl-accepting chemotaxis receptor; PFAM: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain; SMART: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain YP_004792460.1 KEGG: sml:Smlt2260 chemotaxis protein CheA; PFAM: CheW-like protein; ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup, homodimeric; Signal transduction histidine kinase, phosphotransfer (Hpt) region; SMART: CheW-like protein; Signal transduction histidine kinase, phosphotransfer (Hpt) region; ATP-binding region, ATPase-like YP_004792461.1 KEGG: smt:Smal_1853 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region YP_004792462.1 KEGG: sml:Smlt2262 hypothetical protein YP_004792463.1 KEGG: sml:Smlt2263 protein with a CheW-like domain; PFAM: CheW-like protein; SMART: CheW-like protein YP_004792464.1 PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: smt:Smal_1856 cobyrinic acid ac-diamide synthase YP_004792465.1 PFAM: Outer membrane protein, OmpA/MotB, C-terminal; KEGG: sml:Smlt2265 flagellar motor protein MotD YP_004792466.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: sml:Smlt2266 flagellar motor protein YP_004792467.1 KEGG: sml:Smlt2267 chemotaxis two component regulator sensor histidine kinase transcriptional regulator; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, phosphotransfer (Hpt) region; Signal transduction histidine kinase, subgroup, homodimeric; CheW-like protein; SMART: CheW-like protein; ATP-binding region, ATPase-like; Signal transduction histidine kinase, phosphotransfer (Hpt) region YP_004792468.1 KEGG: smt:Smal_1860 chemotaxis phosphatase, CheZ YP_004792469.1 KEGG: sml:Smlt2269 two component response regulator chemotaxis protein CheY; PFAM: Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region YP_004792470.1 KEGG: sml:Smlt2270 RNA polymerase sigma factor for flagellar regulon FliA; TIGRFAM: RNA polymerase sigma factor, FliA/WhiG; RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 4; RNA polymerase sigma-70 region 2; RNA polymerase sigma-70 region 3 YP_004792471.1 PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: sml:Smlt2271 ParA family ATPase flagella number regulator YP_004792472.1 TIGRFAM: Signal-recognition particle (SRP)-type GTPase; PFAM: Signal recognition particle, SRP54 subunit, GTPase; KEGG: sml:Smlt2272 flagellar biosynthesis regulator FlhF; SMART: ATPase, AAA+ type, core YP_004792473.1 KEGG: sml:Smlt2273 flagellar biosynthesis protein FlhA; TIGRFAM: Flagellar biosynthesis protein FlhA; PFAM: Type III secretion system FHIPEP YP_004792474.1 KEGG: sml:Smlt2274 flagellar biosynthesis protein FlhB; TIGRFAM: Flagellar biosynthetic protein FlhB; PFAM: Type III secretion exporter YP_004792475.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; MHYT; KEGG: smt:Smal_1867 diguanylate cyclase/phosphodiesterase; SMART: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted YP_004792476.1 KEGG: smt:Smal_1868 flagellar biosynthetic protein FliR; TIGRFAM: Flagellar biosynthesis protein FliR; PFAM: Type III secretion system inner membrane R protein YP_004792477.1 PFAM: Bacterial export protein FliQ, family 3; KEGG: sml:Smlt2278 flagellar biosynthetic protein FliQ YP_004792478.1 KEGG: smt:Smal_1870 flagellar biosynthesis protein FliP; TIGRFAM: Flagellar transport protein FliP; PFAM: Type III secretion system inner membrane P protein YP_004792479.1 KEGG: sml:Smlt2280 flagellar protein FliO; TIGRFAM: Flagellar biosynthesis protein, FliO; PFAM: Flagellar biosynthesis protein, FliO YP_004792480.1 KEGG: sml:Smlt2281 flagellar motor switch protein; TIGRFAM: Flagellar motor switch FliN; PFAM: Surface presentation of antigen (SpoA) YP_004792481.1 KEGG: sml:Smlt2282 flagellar motor switch protein FliM; TIGRFAM: Flagellar motor switch protein FliM; PFAM: Flagellar motor switch protein FliM; Surface presentation of antigen (SpoA) YP_004792482.1 PFAM: Flagellar basal body-associated protein FliL; KEGG: sml:Smlt2283 flagellar basal body-associated protein FliL YP_004792483.1 PFAM: Flagellar hook-length control protein; KEGG: sml:Smlt2284 flagellar hook-length control protein YP_004792484.1 TIGRFAM: Flagellar export FliJ; KEGG: sml:Smlt2285 flagellar FliJ protein YP_004792485.1 TIGRFAM: Flagellar protein export ATPase, FliI; ATPase, type III secretion system, FliI/YscN; PFAM: ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain; KEGG: sml:Smlt2286 flagellum-specific ATP synthase; SMART: ATPase, AAA+ type, core YP_004792486.1 PFAM: Flagellar assembly protein FliH/Type III secretion system HrpE; KEGG: sml:Smlt2287 flagellar assembly protein, FliH YP_004792487.1 KEGG: smt:Smal_1879 flagellar motor switch protein FliG; TIGRFAM: Flagellar motor switch protein FliG; PFAM: Flagellar motor switch protein FliG YP_004792488.1 KEGG: sml:Smlt2289 flagellar MS-ring protein; TIGRFAM: Flagellar FliF M-ring protein; PFAM: Flagellar M-ring C-terminal; Secretory protein YscJ/FliF YP_004792489.1 TIGRFAM: Flagellar hook-basal body complex protein FliE; HAMAP: Flagellar hook-basal body complex protein FliE; KEGG: smt:Smal_1881 flagellar hook-basal body complex subunit FliE; PFAM: Flagellar hook-basal body complex protein FliE YP_004792490.1 KEGG: smt:Smal_1882 hypothetical protein YP_004792491.1 KEGG: sml:Smlt2295 nitrogen regulation protein NR(I); PFAM: RNA polymerase sigma factor 54, interaction; Flagellar regulatory FleQ; Helix-turn-helix, Fis-type; SMART: ATPase, AAA+ type, core YP_004792492.1 KEGG: smt:Smal_1884 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region YP_004792493.1 KEGG: smt:Smal_1885 RNA polymerase sigma-54 subunit, RpoN; TIGRFAM: RNA polymerase sigma factor 54; PFAM: RNA polymerase sigma factor 54, DNA-binding; RNA polymerase sigma factor 54, core-binding; RNA polymerase sigma factor 54 YP_004792494.1 KEGG: smt:Smal_1888 two component LuxR family transcriptional regulator; PFAM: Signal transduction response regulator, receiver region; Transcription regulator LuxR, C-terminal; SMART: Signal transduction response regulator, receiver region; Transcription regulator LuxR, C-terminal YP_004792495.1 KEGG: smt:Smal_1889 hypothetical protein YP_004792496.1 KEGG: sml:Smlt2301 hypothetical protein YP_004792497.1 KEGG: smt:Smal_1891 flagellar protein FliS; TIGRFAM: Flagellar protein FliS; PFAM: Flagellar protein FliS YP_004792498.1 PFAM: Flagellar hook-associated 2, C-terminal; Flagellar hook-associated protein 2, N-terminal; Flagellin hook, IN motif; KEGG: sml:Smlt2303 flagellar hook-associated protein 2 YP_004792499.1 PFAM: Flagellin, N-terminal; Flagellin, C-terminal; KEGG: smt:Smal_1893 flagellin YP_004792500.1 PFAM: Flagellin, N-terminal; Flagellin, C-terminal; KEGG: smt:Smal_1894 flagellin YP_004792501.1 PFAM: Flagellin, N-terminal; Flagellin, C-terminal; KEGG: sml:Smlt2306 flagellin YP_004792502.1 KEGG: smt:Smal_1896 flagellar hook-associated protein FlgL; TIGRFAM: Flagellar hook-associated protein 3; PFAM: Flagellin, N-terminal YP_004792503.1 KEGG: smt:Smal_1897 flagellar hook-associated protein FlgK; TIGRFAM: Flagellar hook-associated protein, FlgK; PFAM: Protein of unknown function DUF1078, C-terminal; Flagellar basal body rod protein, N-terminal YP_004792504.1 TIGRFAM: Flagellar protein FlgJ type-2; PFAM: Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase; Flagellar protein FlgJ, N-terminal; KEGG: smt:Smal_1898 flagellar rod assembly protein/muramidase FlgJ; SMART: Lysozyme subfamily 2 YP_004792505.1 KEGG: sml:Smlt2310 flagellar basal body P-ring protein; HAMAP: Flagellar P-ring protein; PFAM: Flagellar P-ring protein YP_004792506.1 KEGG: sml:Smlt2311 flagellar basal body L-ring protein; HAMAP: Flagellar L-ring protein; PFAM: Flagellar L-ring protein YP_004792507.1 KEGG: smt:Smal_1901 flagellar basal body rod protein FlgG; TIGRFAM: Flagellar basal-body rod FlgG; Fagellar hook-basal body protein, FlgE/F/G; PFAM: Protein of unknown function DUF1078, C-terminal; Flagellar basal body rod protein, N-terminal YP_004792508.1 KEGG: sml:Smlt2313 flagellar basal body rod protein FlgF; TIGRFAM: Flagellar basal-body rod FlgF; Fagellar hook-basal body protein, FlgE/F/G; PFAM: Flagellar basal body rod protein, N-terminal; Protein of unknown function DUF1078, C-terminal YP_004792509.1 KEGG: sml:Smlt2314 flagellar hook protein FlgE; TIGRFAM: Fagellar hook-basal body protein, FlgE/F/G; PFAM: Flagellar basal body FlaE; Flagellar basal body rod protein, N-terminal; Protein of unknown function DUF1078, C-terminal YP_004792510.1 PFAM: Flagellar hook capping protein; KEGG: sml:Smlt2315 flagellar basal body rod modification protein YP_004792511.1 KEGG: smt:Smal_1905 flagellar basal body rod protein FlgC; TIGRFAM: Flagellar basal-body rod protein FlgC; PFAM: Flagellar basal body rod protein, N-terminal; Protein of unknown function DUF1078, C-terminal YP_004792512.1 KEGG: sml:Smlt2317 flagellar basal body rod protein FlgB; TIGRFAM: Flagellar basal-body rod protein FlgB; PFAM: Flagellar basal body rod protein, N-terminal YP_004792513.1 KEGG: sml:Smlt2318 two-component response regulator chemotaxis signal transduction protein; PFAM: CheW-like protein; Signal transduction response regulator, receiver region; SMART: CheW-like protein; Signal transduction response regulator, receiver region YP_004792514.1 PFAM: Transposase, IS116/IS110/IS902; Transposase, IS111A/IS1328/IS1533; KEGG: ppu:PP_5290 ISPpu10, transposase YP_004792515.1 KEGG: sml:Smlt2319 flagellar basal body P-ring biosynthesis protein FlgA; TIGRFAM: Flagella basal body P-ring formation protein FlgA; PFAM: SAF domain YP_004792516.1 PFAM: Anti-sigma-28 factor, FlgM; KEGG: sml:Smlt2320 FlgM YP_004792517.1 PFAM: FlgN; KEGG: sml:Smlt2321 flagella protein YP_004792518.1 KEGG: smt:Smal_1911 histidine kinase; PFAM: ATP-binding region, ATPase-like; SMART: ATP-binding region, ATPase-like YP_004792519.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; Signal transduction response regulator, receiver region; KEGG: sml:Smlt2323 GGDEF EAL response regulator signalling protein; SMART: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; Signal transduction response regulator, receiver region YP_004792520.1 TIGRFAM: PAS; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor region; PAS fold; KEGG: smt:Smal_1913 PAS/PAC sensor signal transduction histidine kinase; SMART: ATP-binding region, ATPase-like; PAS YP_004792521.1 TIGRFAM: Diguanylate cyclase, predicted; PAS; PFAM: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; PAS fold-3; PAS fold-4; KEGG: sml:Smlt2325 PAS GGDEF EAL domain-containing protein; SMART: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; PAC motif YP_004792522.1 KEGG: sml:Smlt2326 transmembrane protein YP_004792524.1 KEGG: sml:Smlt2329 hypothetical protein YP_004792525.1 KEGG: sml:Smlt2330 methyl-accepting chemotaxis protein; PFAM: Chemotaxis methyl-accepting receptor, signalling; SMART: Chemotaxis methyl-accepting receptor, signalling YP_004792526.1 KEGG: smt:Smal_1918 hypothetical protein; HAMAP: Uncharacterised protein family UPF0274; PFAM: Uncharacterised protein family UPF0274 YP_004792527.1 TIGRFAM: tRNA-specific 2-thiouridylase; HAMAP: tRNA-specific 2-thiouridylase; KEGG: sml:Smlt2332 tRNA-specific 2-thiouridylase MnmA; PFAM: tRNA methyl transferase-like YP_004792528.1 PFAM: NUDIX hydrolase domain; KEGG: sml:Smlt2333 MutT family protein YP_004792529.1 KEGG: smt:Smal_1921 hypothetical protein YP_004792530.1 KEGG: sml:Smlt2335 ATP-dependent Clp protease adaptor protein ClpS; HAMAP: ATP-dependent Clp protease adapter protein clpS; PFAM: Adaptor protein ClpS, core YP_004792531.1 PFAM: Aminoglycoside/hydroxyurea antibiotic resistance kinase; KEGG: sml:Smlt2336 streptomycin resistance protein, streptomycin 3''-phosphotransferase YP_004792532.1 TIGRFAM: ATP-dependent Clp protease ATP-binding subunit clpA; PFAM: ATPase associated with various cellular activities, AAA-2; Clp, N-terminal; ATPase, AAA-type, core; Clp ATPase, C-terminal; KEGG: smt:Smal_1924 ATP-dependent Clp protease, ATP-binding subunit ClpA; SMART: ATPase, AAA+ type, core YP_004792533.1 PFAM: Plasmid maintenance system killer; KEGG: hde:HDEF_p0026 addiction module, toxin YP_004792534.1 TIGRFAM: Addiction module antidote protein, HigA; KEGG: amv:ACMV_P1_01900 antitoxin YP_004792535.1 KEGG: sml:Smlt2338 hypothetical protein YP_004792537.1 TIGRFAM: Translation initiation factor IF-1; HAMAP: Translation initiation factor IF-1; KEGG: smt:Smal_1927 translation initiation factor IF-1; PFAM: S1, IF1 type YP_004792538.1 PFAM: Leucyl/phenylalanyl-tRNA-protein transferase; TIGRFAM: Leucyl/phenylalanyl-tRNA-protein transferase; HAMAP: Leucyl/phenylalanyl-tRNA-protein transferase; KEGG: sml:Smlt2340 leucyl/phenylalanyl-tRNA--protein transferase YP_004792539.1 KEGG: smt:Smal_1929 hypothetical protein YP_004792540.1 PFAM: Protein of unknown function DUF482; KEGG: sml:Smlt2342 hypothetical protein YP_004792541.1 KEGG: smt:Smal_1931 cell wall hydrolase/autolysin; PFAM: Cell wall hydrolase/autolysin, catalytic; SMART: Cell wall hydrolase/autolysin, catalytic YP_004792542.1 TIGRFAM: Thioredoxin reductase; KEGG: sml:Smlt2343 thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_004792543.1 KEGG: smt:Smal_1933 cell divisionFtsK/SpoIIIE; PFAM: Cell divisionFtsK/SpoIIIE; DNA translocase ftsK gamma; SMART: ATPase, AAA+ type, core YP_004792544.1 PFAM: Transglutaminase-like; KEGG: sml:Smlt2345 hypothetical protein YP_004792545.1 TIGRFAM: Outer membrane lipoprotein carrier protein LolA, Proteobacteria; HAMAP: Outer membrane lipoprotein carrier protein LolA, Proteobacteria; KEGG: sml:Smlt2346 outer-membrane lipoprotein carrier protein; PFAM: Outer membrane lipoprotein carrier protein LolA YP_004792546.1 KEGG: scl:sce8418 hypothetical protein YP_004792547.1 KEGG: smt:Smal_1936 recombination factor protein RarA; PFAM: ATPase, AAA-type, core; SMART: ATPase, AAA+ type, core YP_004792548.1 PFAM: Protein of unknown function DUF805; KEGG: smt:Smal_1937 hypothetical protein YP_004792549.1 KEGG: smt:Smal_1938 hypothetical protein YP_004792550.1 PFAM: esterase; KEGG: smt:Smal_1939 esterase YP_004792551.1 KEGG: smt:Smal_1940 hypothetical protein YP_004792552.1 PFAM: Periplasmic binding protein; KEGG: sml:Smlt2355 binding-protein-dependent transport lipoprotein YP_004792553.1 PFAM: Bacterial transport system permease protein; KEGG: smt:Smal_1942 transport system permease YP_004792554.1 PFAM: ABC transporter-like; KEGG: smt:Smal_1943 ABC transporter-like protein; SMART: ATPase, AAA+ type, core YP_004792555.1 KEGG: smt:Smal_1944 hypothetical protein YP_004792556.1 KEGG: sml:Smlt2361 elongation factor G; TIGRFAM: Translation elongation factor EFG/EF2; Small GTP-binding protein; PFAM: Protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, domain 2; Translation elongation factor EFG/EF2, domain IV; Translation elongation factor EFG/EF2, C-terminal YP_004792557.1 KEGG: sml:Smlt2362 hypothetical protein YP_004792558.1 PFAM: SapC; KEGG: smt:Smal_1947 SapC family protein YP_004792559.1 KEGG: sml:Smlt2365 two-component response regulator sensor histidine kinase fusion protein transcriptional regulator; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; Signal transduction response regulator, receiver region; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; Signal transduction response regulator, receiver region YP_004792560.1 KEGG: sml:Smlt2366 two-component response regulator LuxR family transcriptional regulator; PFAM: Transcription regulator LuxR, C-terminal; Signal transduction response regulator, receiver region; SMART: Transcription regulator LuxR, C-terminal; Signal transduction response regulator, receiver region YP_004792561.1 PFAM: Lipocalin-like; KEGG: smt:Smal_1950 lipocalin family protein YP_004792562.1 PFAM: Methyltransferase type 11; KEGG: smt:Smal_1951 type 11 methyltransferase YP_004792563.1 PFAM: Protein of unknown function DUF1295; KEGG: sml:Smlt2369 transmembrane protein YP_004792564.1 KEGG: sml:Smlt2370 hypothetical protein YP_004792565.1 KEGG: sml:Smlt2371 cyclopropane-fatty-acyl-phospholipid synthase; PFAM: Cyclopropane-fatty-acyl-phospholipid synthase YP_004792566.1 PFAM: Protein of unknown function DUF1365; KEGG: sml:Smlt2372 hypothetical protein YP_004792567.1 PFAM: Amine oxidase; KEGG: smt:Smal_1956 amine oxidase YP_004792568.1 KEGG: sml:Smlt2374 fatty acid desaturase (membrane); PFAM: Fatty acid desaturase, type 1 YP_004792569.1 KEGG: sml:Smlt2375 hypothetical protein YP_004792570.1 KEGG: sml:Smlt2377 RNA polymerase sigma factor RpoE; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2 YP_004792571.1 TIGRFAM: Anti-sigma factor ChrR, KEGG: sml:Smlt2378 transcriptional regulator YP_004792572.1 KEGG: sml:Smlt2379 hypothetical protein YP_004792573.1 TIGRFAM: PAS; PFAM: ATP-binding region, ATPase-like; PAS fold-4; Signal transduction response regulator, receiver region; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; KEGG: sml:Smlt2380 hybrid two-component system sensor histidine kinase response regulator transcriptional regulator; SMART: ATP-binding region, ATPase-like; Signal transduction response regulator, receiver region; PAS; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region YP_004792574.1 KEGG: sml:Smlt2381 two-component response regulator protein; PFAM: Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region YP_004792575.1 KEGG: sml:Smlt2382 two-component sensor histidine kinase protein; PFAM: ATP-binding region, ATPase-like; GAF; PAS fold-2; Phytochrome, central region; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SMART: ATP-binding region, ATPase-like; GAF; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region YP_004792576.1 KEGG: sml:Smlt2383 hypothetical protein YP_004792577.1 PFAM: TspO/MBR-related protein; KEGG: sml:Smlt2384 transmembrane TspO/MBR tryptophan-rich family protein YP_004792578.1 KEGG: smt:Smal_1963 hypothetical protein YP_004792579.1 PFAM: GCN5-related N-acetyltransferase; KEGG: smt:Smal_1964 GCN5-related N-acetyltransferase YP_004792580.1 KEGG: smt:Smal_1969 AraC family transcriptional regulator; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain YP_004792581.1 KEGG: smt:Smal_1970 hypothetical protein YP_004792582.1 PFAM: Glycoside hydrolase family 2, carbohydrate-binding; KEGG: tsa:AciPR4_2784 diguanylate cyclase YP_004792583.1 PFAM: LexA DNA-binding region; KEGG: bpf:BpOF4_17205 hypothetical protein YP_004792584.1 SMART: ATPase, AAA+ type, core; KEGG: dac:Daci_1735 ATPase AAA YP_004792585.1 KEGG: dac:Daci_1736 hypothetical protein YP_004792586.1 KEGG: smt:Smal_1985 hypothetical protein YP_004792587.1 KEGG: sml:Smlt2497 transmembrane protein YP_004792588.1 KEGG: smt:Smal_1987 hypothetical protein YP_004792589.1 KEGG: smt:Smal_1989 hypothetical protein YP_004792590.1 PFAM: XdhC- CoxI; KEGG: smt:Smal_1990 hypothetical protein YP_004792591.1 KEGG: smt:Smal_1991 aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; PFAM: Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding; Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead YP_004792592.1 KEGG: smt:Smal_1992 molybdopterin dehydrogenase FAD-binding; PFAM: Molybdopterin dehydrogenase, FAD-binding YP_004792593.1 PFAM: [2Fe-2S]-binding; Ferredoxin; KEGG: smt:Smal_1993 xanthine dehydrogenase iron-sulfur-binding subunit YP_004792594.1 KEGG: sml:Smlt0180 transmembrane protein YP_004792595.1 PFAM: Protein of unknown function DUF1348; KEGG: smt:Smal_2002 hypothetical protein YP_004792596.1 PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: smt:Smal_2003 TetR family transcriptional regulator YP_004792597.1 KEGG: smt:Smal_2009 excinuclease ABC subunit A; TIGRFAM: Excinuclease ABC, A subunit; PFAM: ABC transporter-like YP_004792598.1 KEGG: smt:Smal_2019 hypothetical protein YP_004792599.1 KEGG: smt:Smal_2021 AraC family transcriptional regulator; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain YP_004792600.1 KEGG: smt:Smal_2022 RND family efflux transporter MFP subunit; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD YP_004792601.1 PFAM: Acriflavin resistance protein; KEGG: smt:Smal_2023 acriflavin resistance protein YP_004792602.1 PFAM: Outer membrane efflux protein; KEGG: smt:Smal_2024 outer membrane efflux protein YP_004792603.1 PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: smt:Smal_2025 TetR family transcriptional regulator YP_004792604.1 KEGG: smt:Smal_2026 TetR family transcriptional regulator; manually curated; PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal YP_004792605.1 PFAM: NADH-quinone oxidoreductase, subunit D; TIGRFAM: NADH dehydrogenase I, D subunit; HAMAP: NAD(P)H-quinone oxidoreductase subunit H; KEGG: smt:Smal_2027 NADH dehydrogenase subunit D YP_004792606.1 manually curated; KEGG: smt:Smal_2028 hypothetical protein YP_004792607.1 KEGG: smt:Smal_2029 LacI family transcriptional regulator; PFAM: Periplasmic binding protein/LacI transcriptional regulator; HTH transcriptional regulator, LacI; SMART: HTH transcriptional regulator, LacI YP_004792608.1 TIGRFAM: Phosphoenolpyruvate-protein phosphotransferase; Phosphotransferase system, phosphocarrier HPr protein; KEGG: smt:Smal_2030 phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilising enzyme; Phosphotransferase system, phosphoenolpyruvate-dependent sugar EIIA 2; Phosphotransferase system, phosphocarrier HPr protein; Phosphotransferase system, PEP-utilising enzyme, N-terminal; PEP-utilising enzyme, mobile region YP_004792609.1 TIGRFAM: 1-phosphofructokinase; KEGG: smt:Smal_2031 1-phosphofructokinase; PFAM: Carbohydrate/purine kinase YP_004792610.1 KEGG: smt:Smal_2032 PTS system fructose subfamily transporter subunit IIC; TIGRFAM: Phosphotransferase system, fructose IIC component; Phosphotransferase system, fructose-specific IIB subunit; PFAM: Phosphotransferase system, fructose-specific IIB subunit; Phosphotransferase system, EIIC YP_004792611.1 PFAM: Carbohydrate-selective porin OprB; KEGG: sml:Smlt2559 outer membrane regulator of pathogenicity factors protein YP_004792612.1 KEGG: sml:Smlt2560 oxidoreductase YP_004792613.1 PFAM: Helix-turn-helix, HxlR type; KEGG: sml:Smlt2561 helix-turn-helix protein YP_004792614.1 KEGG: sml:Smlt2570 transmembrane efflux protein; manually curated; PFAM: Divalent ion symporter YP_004792615.1 KEGG: sml:Smlt2534 hypothetical protein; manually curated; PFAM: Protein of unknown function DUF72 YP_004792617.1 KEGG: sml:Smlt2540 two component response regulator transcriptional regulator; PFAM: Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region YP_004792618.1 KEGG: sth:STH2603 hypothetical protein YP_004792619.1 manually curated; KEGG: bte:BTH_II0312 hypothetical protein YP_004792620.1 PFAM: Phosphate-selective porin O/P; KEGG: sml:Smlt2571 phosphate selective porin YP_004792621.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: sml:Smlt2572 ABC transporter transmembrane permease YP_004792622.1 PFAM: ABC transporter-like; KEGG: sml:Smlt2573 ATP-binding ABC transporter protein; SMART: ATPase, AAA+ type, core YP_004792623.1 KEGG: sml:Smlt2574 ABC transporter protein YP_004792624.1 PFAM: PrpF protein; KEGG: sml:Smlt2575 hypothetical protein YP_004792625.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: sml:Smlt2576 LysR family transcriptional regulator YP_004792627.1 KEGG: smt:Smal_2035 hypothetical protein YP_004792628.1 KEGG: smt:Smal_2037 hypothetical protein YP_004792629.1 PFAM: Methylenetetrahydrofolate reductase; KEGG: smt:Smal_2038 methylenetetrahydrofolate reductase YP_004792630.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: smt:Smal_2039 LysR family transcriptional regulator YP_004792631.1 KEGG: smt:Smal_2040 FMN reductase; TIGRFAM: FMN reductase, MsuE-like; PFAM: NADPH-dependent FMN reductase YP_004792632.1 PFAM: Protein of unknown function DUF1852; KEGG: sml:Smlt2585 hypothetical protein YP_004792633.1 KEGG: smt:Smal_2042 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; PFAM: Methionine synthase, vitamin-B12 independent YP_004792634.1 KEGG: sml:Smlt2587 hypothetical protein YP_004792635.1 KEGG: sml:Smlt2588 trypsin protease; PFAM: Peptidase S1/S6, chymotrypsin/Hap; SMART: Peptidase S1/S6, chymotrypsin/Hap YP_004792636.1 PFAM: NUDIX hydrolase domain; KEGG: smt:Smal_2095 NUDIX hydrolase YP_004792637.1 KEGG: bgl:bglu_1g21920 hypothetical protein YP_004792638.1 KEGG: smt:Smal_2074 peptidase S15 YP_004792639.1 KEGG: sml:Smlt2670 hypothetical protein YP_004792640.1 KEGG: smt:Smal_2076 DNA/RNA non-specific endonuclease; PFAM: DNA/RNA non-specific endonuclease; SMART: Extracellular Endonuclease, subunit A YP_004792642.1 KEGG: smt:Smal_2077 HAD-superfamily hydrolase; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase-like hydrolase YP_004792643.1 KEGG: sml:Smlt2613 transmembrane protein YP_004792644.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sml:Smlt2614 glyoxylase/bleomycin resistance protein YP_004792645.1 KEGG: sml:Smlt2615 helix-turn-helix transcriptional regulator; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain YP_004792646.1 KEGG: sml:Smlt2621 sigma 54/Fis family regulatory protein; PFAM: RNA polymerase sigma factor 54, interaction; Helix-turn-helix, Fis-type; SMART: ATPase, AAA+ type, core YP_004792647.1 KEGG: smt:Smal_2088 hypothetical protein YP_004792648.1 KEGG: smt:Smal_2089 hypothetical protein YP_004792649.1 KEGG: smt:Smal_2090 hypothetical protein YP_004792650.1 PFAM: Peptidase C39, bacteriocin processing; KEGG: sml:Smlt2625 peptidase protein YP_004792651.1 KEGG: sml:Smlt2626 hypothetical protein YP_004792652.1 KEGG: smt:Smal_2093 hypothetical protein YP_004792653.1 KEGG: smt:Smal_2096 RebB protein YP_004792654.1 KEGG: smt:Smal_2097 RebB protein YP_004792655.1 KEGG: smt:Smal_2098 RebA protein YP_004792656.1 KEGG: smt:Smal_2099 RebB protein YP_004792657.1 KEGG: smt:Smal_2100 hypothetical protein YP_004792658.1 KEGG: smt:Smal_2101 hypothetical protein YP_004792659.1 KEGG: smt:Smal_2102 hypothetical protein YP_004792660.1 KEGG: smt:Smal_2103 hypothetical protein YP_004792661.1 KEGG: smt:Smal_2104 hypothetical protein YP_004792662.1 KEGG: smt:Smal_2105 sigma54 specific transcriptional regulator; PFAM: RNA polymerase sigma factor 54, interaction; Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain YP_004792663.1 PFAM: 6-phosphogluconate dehydrogenase, NAD-binding; KEGG: bch:Bcen2424_1979 6-phosphogluconate dehydrogenase, NAD-binding YP_004792664.1 KEGG: sml:Smlt2628 hypothetical protein YP_004792665.1 KEGG: smt:Smal_2107 hypothetical protein YP_004792666.1 KEGG: sml:Smlt2630 transmembrane protein YP_004792667.1 KEGG: sur:STAUR_8357 tyrosinase; PFAM: Tyrosinase YP_004792668.1 KEGG: smt:Smal_2109 protein tyrosine/serine phosphatase YP_004792669.1 PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: smt:Smal_2110 TonB-dependent receptor YP_004792670.1 PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: smt:Smal_2111 TetR family transcriptional regulator YP_004792671.1 KEGG: slt:Slit_1107 hypothetical protein YP_004792672.1 PFAM: Protein of unknown function DUF262; Protein of unknown function DUF1524 RloF; KEGG: bpm:BURPS1710b_3665 hypothetical protein YP_004792673.1 KEGG: smt:Smal_2112 hypothetical protein YP_004792674.1 KEGG: sml:Smlt2632 transmembrane cation transport protein; TIGRFAM: Cation efflux protein; PFAM: Cation efflux protein YP_004792675.1 PFAM: Methylpurine-DNA glycosylase (MPG); TIGRFAM: Methylpurine-DNA glycosylase (MPG); HAMAP: 3-methyladenine DNA glycosylase; KEGG: sml:Smlt2633 DNA glycosylase YP_004792676.1 TIGRFAM: Diguanylate cyclase, predicted; PAS; PFAM: Diguanylate cyclase, predicted; GAF; PAS fold-4; KEGG: smt:Smal_2114 PAS/PAC sensor-containing diguanylate cyclase; SMART: Diguanylate cyclase, predicted; PAS; GAF YP_004792677.1 KEGG: sml:Smlt0337 hypothetical protein YP_004792678.1 PFAM: ABC transporter-like; Protein of unknown function DUF214, permase predicted; KEGG: smt:Smal_2115 ABC transporter-like protein; SMART: ATPase, AAA+ type, core YP_004792679.1 KEGG: smt:Smal_2116 RND family efflux transporter MFP subunit; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD YP_004792680.1 KEGG: smt:Smal_2117 hypothetical protein YP_004792681.1 KEGG: sml:Smlt2645 two-component regulatory system family, response regulator protein; PFAM: Signal transduction response regulator, receiver region; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver region YP_004792682.1 KEGG: smt:Smal_2119 integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; HAMP linker domain; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; HAMP linker domain YP_004792683.1 KEGG: smt:Smal_2120 hypothetical protein YP_004792684.1 KEGG: smt:Smal_2121 hypothetical protein YP_004792685.1 PFAM: Siderophore-interacting protein; FAD-binding 9, siderophore-interacting; KEGG: smt:Smal_2122 siderophore-interacting protein YP_004792686.1 KEGG: smt:Smal_2123 TonB-dependent siderophore receptor; TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug YP_004792687.1 KEGG: smt:Smal_2124 hypothetical protein YP_004792688.1 PFAM: PepSY-associated TM helix; KEGG: smt:Smal_2125 PepSY-associated TM helix domain-containing protein YP_004792689.1 KEGG: smt:Smal_2126 hypothetical protein YP_004792690.1 PFAM: Protein of unknown function DUF1006; KEGG: smt:Smal_2127 hypothetical protein YP_004792691.1 KEGG: smt:Smal_2128 TetR family transcriptional regulator YP_004792692.1 KEGG: smt:Smal_2129 TonB-dependent siderophore receptor; TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug YP_004792694.1 KEGG: cja:CJA_0275 toxin secretion, membrane fusion protein YP_004792695.1 PFAM: ABC transporter-like; Peptidase C39, bacteriocin processing; ABC transporter, transmembrane region; KEGG: ebi:EbC_17850 toxin secretion ABC transporter, transmembrane region; SMART: ATPase, AAA+ type, core YP_004792697.1 KEGG: smt:Smal_0367 hypothetical protein YP_004792700.1 PFAM: Pili assembly chaperone, N-terminal, bacterial; KEGG: P pilus assembly protein chaperone PapD YP_004792701.1 PFAM: Pili assembly chaperone, N-terminal, bacterial; KEGG: bxe:Bxe_B2971 fimbrial chaperone protein YP_004792703.1 PFAM: Fimbrial biogenesis outer membrane usher protein; KEGG: bxe:Bxe_B2970 fimbrial biogenesis outer membrane usher protein YP_004792704.1 PFAM: Pili assembly chaperone, N-terminal, bacterial; KEGG: bpt:Bpet4466 pili assembly chaperone YP_004792705.1 PFAM: Fimbrial protein, C-terminal; KEGG: pva:Pvag_pPag10089 type I fimbrial protein, A chain precursor YP_004792706.1 KEGG: enc:ECL_04444 opacity protein and surface antigens-like protein YP_004792707.1 KEGG: acd:AOLE_06945 hypothetical protein YP_004792708.1 KEGG: acd:AOLE_06945 hypothetical protein YP_004792709.1 KEGG: acd:AOLE_06945 hypothetical protein YP_004792711.1 KEGG: bxe:Bxe_A0280 two component LuxR family transcriptional regulator; PFAM: Transcription regulator LuxR, C-terminal; Signal transduction response regulator, receiver region; SMART: Transcription regulator LuxR, C-terminal; Signal transduction response regulator, receiver region YP_004792712.1 KEGG: LuxR family DNA-binding response regulator; PFAM: Signal transduction response regulator, receiver region; Transcription regulator LuxR, C-terminal; SMART: Transcription regulator LuxR, C-terminal; Signal transduction response regulator, receiver region YP_004792713.1 KEGG: Hpt sensor hybrid histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; Signal transduction response regulator, receiver region; Signal transduction histidine kinase, phosphotransfer (Hpt) region; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; Signal transduction response regulator, receiver region YP_004792714.1 KEGG: bam:Bamb_5151 periplasmic sensor hybrid histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region YP_004792716.1 KEGG: sml:Smlt0269 organic hydroperoxide resistance protein; TIGRFAM: Peroxiredoxin, organic hydroperoxide resistance-related; PFAM: Peroxiredoxin, OsmC-like protein YP_004792717.1 KEGG: smt:Smal_2132 conjugal transfer protein TrbP YP_004792718.1 TIGRFAM: Peptidase S33, proline iminopeptidase 1; KEGG: smt:Smal_2133 proline iminopeptidase; PFAM: Alpha/beta hydrolase fold-1 YP_004792719.1 TIGRFAM: Signal transduction histidine kinase, heavy metal sensor; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; HAMP linker domain; KEGG: pau:PA14_45870 two-component sensor; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; HAMP linker domain YP_004792720.1 TIGRFAM: Signal transduction response regulator, heavy metal response; PFAM: Signal transduction response regulator, receiver region; Signal transduction response regulator, C-terminal; KEGG: hse:Hsero_2484 two component heavy metal response transcription regulator protein; SMART: Signal transduction response regulator, receiver region YP_004792721.1 PFAM: Acriflavin resistance protein; KEGG: pap:PSPA7_3893 multidrug ABC transporter YP_004792722.1 KEGG: psb:Psyr_1129 secretion protein HlyD; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD YP_004792723.1 KEGG: smt:Smal_2134 hypothetical protein YP_004792724.1 KEGG: smt:Smal_2135 hypothetical protein YP_004792725.1 TIGRFAM: ATPase, P-type, magnesium-translocating; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; KEGG: sml:Smlt2655 magnesium-transporting ATPase MgtA; PFAM: ATPase, P-type, ATPase-associated region; ATPase, P-type cation-transporter, N-terminal; Haloacid dehalogenase-like hydrolase; ATPase, P-type cation-transporter, C-terminal YP_004792726.1 PFAM: MgtC/SapB transporter; KEGG: smt:Smal_2137 MgtC/SapB transporter YP_004792727.1 KEGG: sml:Smlt2657 two component sensor histidine kinase transcriptional regulator; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region YP_004792728.1 KEGG: smt:Smal_2139 two component LuxR family transcriptional regulator; PFAM: Signal transduction response regulator, receiver region; Transcription regulator LuxR, C-terminal; SMART: Signal transduction response regulator, receiver region; Transcription regulator LuxR, C-terminal YP_004792729.1 KEGG: sml:Smlt2660 hypothetical protein YP_004792730.1 PFAM: Protein of unknown function DUF6, transmembrane; KEGG: sml:Smlt2661 transmembrane protein YP_004792731.1 KEGG: sfu:Sfum_1629 hypothetical protein YP_004792732.1 KEGG: noc:Noc_1208 hypothetical protein YP_004792733.1 KEGG: hypothetical protein YP_004792734.1 PFAM: Bacterial low temperature requirement A; KEGG: smt:Smal_2141 low temperature requirement A YP_004792735.1 KEGG: smt:Smal_2142 hypothetical protein YP_004792736.1 KEGG: smt:Smal_2143 ECF subfamily RNA polymerase sigma-24 subunit; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2 YP_004792737.1 PFAM: FecR protein; KEGG: smt:Smal_2144 anti-FecI sigma factor FecR YP_004792738.1 PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; Secretin/TonB, short N-terminal; KEGG: sml:Smlt2666 TonB-dependent ferric siderophore receptor YP_004792740.1 KEGG: smt:Smal_2146 beta-lactamase YP_004792741.1 PFAM: Protein of unknown function DUF411; KEGG: smt:Smal_2147 hypothetical protein YP_004792742.1 TIGRFAM: Oxidoreductase alpha (molybdopterin) subunit; KEGG: smt:Smal_2148 oxidoreductase alpha (molybdopterin) subunit; PFAM: Molydopterin dinucleotide-binding region; Molybdopterin oxidoreductase YP_004792743.1 TIGRFAM: Formate dehydrogenase, subunit FdhD; HAMAP: Protein fdhD; KEGG: smt:Smal_2149 formate dehydrogenase family accessory protein FdhD; PFAM: Formate dehydrogenase, subunit FdhD YP_004792744.1 KEGG: sml:Smlt2675 carboxymuconolactone decarboxylase family protein; TIGRFAM: Uncharacterised peroxidase-related; Alkylhydroperoxidase AhpD core; PFAM: Carboxymuconolactone decarboxylase YP_004792745.1 KEGG: smt:Smal_2151 AraC family transcriptional regulator; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain YP_004792746.1 PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: smt:Smal_2152 TetR family transcriptional regulator YP_004792747.1 PFAM: Major facilitator superfamily MFS-1; KEGG: smt:Smal_2153 major facilitator superfamily protein YP_004792748.1 KEGG: sml:Smlt2679 hypothetical protein YP_004792749.1 KEGG: smt:Smal_2155 hypothetical protein YP_004792750.1 KEGG: smt:Smal_2156 hypothetical protein YP_004792751.1 PFAM: Protein of unknown function DUF214, permase predicted; KEGG: sml:Smlt2682 ABC transporter transmembrane permease YP_004792752.1 KEGG: sml:Smlt2683 ABC-transporter ATP binding protein; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core YP_004792753.1 KEGG: sml:Smlt2684 hypothetical protein YP_004792754.1 KEGG: smt:Smal_2160 hypothetical protein YP_004792755.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: sml:Smlt2686 LysR family transcriptional regulator YP_004792756.1 KEGG: sml:Smlt2687 2,5-diketo-D-gluconate reductase B; PFAM: Aldo/keto reductase YP_004792757.1 PFAM: Copper resistance protein CopC, core; KEGG: smt:Smal_2163 copper resistance protein CopC YP_004792758.1 PFAM: Copper resistance D; KEGG: smt:Smal_2164 copper resistance D domain-containing protein YP_004792759.1 TIGRFAM: Signal transduction response regulator, heavy metal response; PFAM: Signal transduction response regulator, receiver region; Signal transduction response regulator, C-terminal; KEGG: sml:Smlt2693 two-component response regulator transcriptional regulator; SMART: Signal transduction response regulator, receiver region YP_004792760.1 TIGRFAM: Signal transduction histidine kinase, heavy metal sensor; PFAM: ATP-binding region, ATPase-like; HAMP linker domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; KEGG: sml:Smlt2694 two-component sensor histidine kinase; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; HAMP linker domain YP_004792761.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: sml:Smlt2695 LysR family transcriptional regulator YP_004792762.1 KEGG: sml:Smlt2696 short chain dehydrogenease; PFAM: Short-chain dehydrogenase/reductase SDR YP_004792763.1 KEGG: smt:Smal_2169 CzcA family heavy metal efflux pump; TIGRFAM: Heavy metal efflux pump CzcA; PFAM: Acriflavin resistance protein YP_004792764.1 TIGRFAM: Secretion protein HlyD; KEGG: smt:Smal_2170 RND family efflux transporter MFP subunit YP_004792765.1 PFAM: Outer membrane efflux protein; KEGG: smt:Smal_2171 outer membrane efflux protein YP_004792766.1 KEGG: sml:Smlt2700 two-component response regulator protein; PFAM: Signal transduction response regulator, receiver region; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver region YP_004792767.1 KEGG: sml:Smlt2701 two-component system sensor histidine kinase; PFAM: Two-component sensor kinase N-terminal; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; ATP-binding region, ATPase-like; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region YP_004792768.1 KEGG: sml:Smlt2702 glycosyl hydrolase; TIGRFAM: Alpha-1,2-mannosidase, PFAM: Glycosyl hydrolase 92 YP_004792770.1 KEGG: kko:Kkor_1036 hypothetical protein YP_004792771.1 PFAM: Thioredoxin domain; KEGG: sml:Smlt2703 thioredoxin YP_004792772.1 PFAM: Host attachment protein; KEGG: sml:Smlt2704 attachment-like protein YP_004792773.1 PFAM: General substrate transporter; KEGG: sml:Smlt2706 proline/betaine transporter YP_004792774.1 KEGG: sml:Smlt2707 hypothetical protein YP_004792775.1 KEGG: smt:Smal_2180 hypothetical protein YP_004792776.1 KEGG: smt:Smal_2181 hypothetical protein YP_004792777.1 TIGRFAM: PAS; PFAM: Signal transduction histidine kinase, HWE region; PAS fold-4; KEGG: sml:Smlt2710 two-component sensor kinase/response regulator fusion protein; SMART: PAC motif YP_004792778.1 KEGG: sml:Smlt2711 two component response regulator transcriptional regulator; PFAM: Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region YP_004792779.1 KEGG: smt:Smal_2184 hypothetical protein YP_004792780.1 KEGG: smt:Smal_2185 hypothetical protein YP_004792781.1 PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; Secretin/TonB, short N-terminal; KEGG: smt:Smal_2186 TonB-dependent receptor YP_004792782.1 PFAM: FecR protein; KEGG: sml:Smlt2715 transmembrane sensor histidine kinase transcriptional regulator YP_004792783.1 KEGG: smt:Smal_2188 ECF subfamily RNA polymerase sigma-24 subunit; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma factor 70, region 4 type 2 YP_004792784.1 PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; KEGG: psa:PST_1797 colicin I receptor precursor YP_004792785.1 KEGG: pae:PA1923 cobaltochelatase subunit CobN; PFAM: CobN/magnesium chelatase YP_004792786.1 KEGG: pag:PLES_33991 hypothetical protein YP_004792787.1 PFAM: Protein of unknown function DUF2149; KEGG: pap:PSPA7_3361 hypothetical protein YP_004792788.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: smt:Smal_2189 LysR family transcriptional regulator YP_004792789.1 PFAM: Pirin, N-terminal; Pirin, C-terminal; KEGG: sml:Smlt2719 pirin domain-containing protein YP_004792790.1 PFAM: Isochorismatase-like; KEGG: sml:Smlt2720 isochorismatase YP_004792791.1 PFAM: Isochorismatase-like; KEGG: sml:Smlt2721 isochorismatase YP_004792792.1 PFAM: Peroxiredoxin, OsmC-like protein; KEGG: smt:Smal_2193 OsmC family protein YP_004792793.1 KEGG: sml:Smlt2723 hypothetical protein YP_004792794.1 KEGG: smt:Smal_2196 hypothetical protein YP_004792795.1 KEGG: smt:Smal_2197 hypothetical protein YP_004792796.1 PFAM: Biopolymer transport protein ExbD/TolR; KEGG: sml:Smlt2726 biopolymer transport protein ExbD YP_004792797.1 KEGG: smt:Smal_2199 MotA/TolQ/ExbB proton channel; PFAM: MotA/TolQ/ExbB proton channel; Protein of unknown function DUF2341; SMART: LamG-like jellyroll fold YP_004792798.1 PFAM: Polypeptide-transport-associated, ShlB-type; Bacterial surface antigen (D15); KEGG: sml:Smlt2728 exported surface antigen protein YP_004792799.1 KEGG: sml:Smlt2729 hypothetical protein YP_004792800.1 KEGG: sml:Smlt2730 general secretory pathway protein YP_004792801.1 TIGRFAM: General secretion pathway protein H; Prepilin-type cleavage/methylation, N-terminal; KEGG: sml:Smlt2731 general secretion pathway protein H YP_004792802.1 TIGRFAM: General secretion pathway protein I; Prepilin-type cleavage/methylation, N-terminal; KEGG: sml:Smlt2732 general secretion pathway protein I YP_004792803.1 KEGG: sml:Smlt2733 general secretion pathway protein J YP_004792804.1 KEGG: sml:Smlt2737 glycine-rich surface autotransporter protein; TIGRFAM: Filamentous haemagglutinin, N-terminal, bacterial; PFAM: Filamentous haemagglutinin, N-terminal, bacterial; Filamentous haemagglutinin, bacterial YP_004792805.1 KEGG: sml:Smlt2738 alkaline phosphatase L YP_004792806.1 KEGG: sml:Smlt2740 general secretion pathway protein F; TIGRFAM: General secretion pathway protein F; PFAM: Type II secretion system F domain YP_004792807.1 SMART: ATPase, AAA+ type, core; manually curated; KEGG: sml:Smlt2741 general secretion pathway protein E; TIGRFAM: Type II secretion system gspE; PFAM: Type II secretion system protein E YP_004792808.1 KEGG: smt:Smal_2211 general secretion pathway protein D; TIGRFAM: Type II secretion system gspD; PFAM: Type II/III secretion system; NolW-like YP_004792809.1 PFAM: General secretion pathway M protein; KEGG: sml:Smlt2743 general secretion pathway protein M YP_004792810.1 PFAM: General secretion pathway L; KEGG: sml:Smlt2744 general secretion pathway protein L YP_004792811.1 KEGG: sml:Smlt2745 general secretion pathway protein K YP_004792812.1 KEGG: smt:Smal_2215 general secretion pathway protein G; TIGRFAM: General secretion pathway protein G; Prepilin-type cleavage/methylation, N-terminal; PFAM: Type II secretion system protein G; Prepilin-type cleavage/methylation, N-terminal YP_004792813.1 manually curated; KEGG: sml:Smlt2747 hypothetical protein YP_004792814.1 KEGG: sml:Smlt2748 hypothetical protein YP_004792815.1 PFAM: FecR protein; KEGG: sml:Smlt2749 signal transduction protein FecR YP_004792816.1 KEGG: smt:Smal_2219 ECF subfamily RNA polymerase sigma-24 subunit; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2 YP_004792817.1 PFAM: Secretin/TonB, short N-terminal; KEGG: sml:Smlt2751 TonB dependent family protein YP_004792818.1 KEGG: sml:Smlt2753 AsnC family regulatory protein; PFAM: Transcription regulator, AsnC-type, C-terminal; SMART: Transcription regulator, AsnC-type YP_004792819.1 PFAM: AzlC-like; KEGG: smt:Smal_2222 AzlC family protein YP_004792820.1 PFAM: Branched-chain amino acid transport; KEGG: sml:Smlt2755 transmembrane amino acid transporter protein YP_004792821.1 TIGRFAM: PAS; PFAM: PAS fold; KEGG: sml:Smlt2762 methyl-accepting chemotaxis protein; SMART: PAS YP_004792822.1 KEGG: smt:Smal_2225 flavodoxin/nitric oxide synthase; PFAM: Flavodoxin/nitric oxide synthase; FAD-binding, type 1; Oxidoreductase FAD/NAD(P)-binding YP_004792823.1 KEGG: ModE family transcriptional regulator; TIGRFAM: Molybdenum-binding protein, N-terminal; Molybdenum-pterin binding; PFAM: Transport-associated OB, type 1; HTH transcriptional regulator, LysR YP_004792824.1 PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: ctt:CtCNB1_0594 TonB-dependent receptor YP_004792825.1 PFAM: Protein of unknown function DUF2478; KEGG: bpt:Bpet1276 hypothetical protein YP_004792826.1 PFAM: Periplasmic binding protein; KEGG: ABC transporter periplasmic subunit YP_004792827.1 PFAM: Bacterial transport system permease protein; KEGG: adn:Alide_2469 transport system permease protein YP_004792828.1 PFAM: ABC transporter-like; KEGG: dac:Daci_4650 ABC transporter-like protein; SMART: ATPase, AAA+ type, core YP_004792829.1 PFAM: Methyltransferase type 11; KEGG: bpt:Bpet1277 hypothetical protein YP_004792830.1 PFAM: ABC transporter-like; KEGG: sml:Smlt2764 molybdenum transport-related, ATP-binding protein; SMART: ATPase, AAA+ type, core YP_004792831.1 KEGG: sml:Smlt2765 ABC molybdenum transport-related membrane protein; TIGRFAM: Molybdate ABC transporter, permease protein; PFAM: Binding-protein-dependent transport systems inner membrane component YP_004792832.1 KEGG: smt:Smal_2228 molybdenum ABC transporter periplasmic molybdate-binding protein; TIGRFAM: Molybdenum ABC transporter, periplasmic binding protein; PFAM: Bacterial extracellular solute-binding, family 1 YP_004792833.1 KEGG: smt:Smal_2229 Crp/Fnr family transcriptional regulator; PFAM: Cyclic nucleotide-binding; HTH transcriptional regulator, Crp; SMART: HTH transcriptional regulator, Crp; Cyclic nucleotide-binding YP_004792834.1 PFAM: HemN, C-terminal; KEGG: smt:Smal_2230 HemN domain-containing protein YP_004792835.1 PFAM: Major facilitator superfamily MFS-1; KEGG: sml:Smlt2769 MFS transmembrane nitrite extrusion transporter protein YP_004792836.1 PFAM: Peptidyl-prolyl cis-trans isomerase, PpiC-type; KEGG: smt:Smal_2232 PpiC-type peptidyl-prolyl cis-trans isomerase YP_004792837.1 TIGRFAM: Nitrate reductase, gamma subunit; KEGG: smt:Smal_2233 respiratory nitrate reductase subunit gamma; PFAM: Nitrate reductase, gamma subunit YP_004792838.1 TIGRFAM: Nitrate reductase, delta subunit; KEGG: smt:Smal_2234 nitrate reductase molybdenum cofactor assembly chaperone; PFAM: Nitrate reductase, delta subunit YP_004792839.1 KEGG: smt:Smal_2235 nitrate reductase subunit beta; TIGRFAM: Nitrate reductase, beta subunit YP_004792840.1 TIGRFAM: Nitrate reductase, alpha subunit; KEGG: sml:Smlt2774 respiratory nitrate reductase subunit alpha; PFAM: Molybdopterin oxidoreductase; Molydopterin dinucleotide-binding region YP_004792841.1 KEGG: smt:Smal_2237 nitrite transporter; TIGRFAM: Nitrate transporter; PFAM: Major facilitator superfamily MFS-1 YP_004792842.1 KEGG: smt:Smal_2238 hypothetical protein YP_004792843.1 KEGG: smt:Smal_2239 molybdopterin guanine dinucleotide synthase YP_004792844.1 PFAM: Molybdopterin biosynthesis MoaE; KEGG: smt:Smal_2240 molybdopterin biosynthesis MoaE protein YP_004792845.1 PFAM: ThiamineS; KEGG: sml:Smlt2779 molybdopterin converting factor subunit 1 YP_004792846.1 KEGG: smt:Smal_2242 molybdenum cofactor synthesis domain-containing protein; TIGRFAM: Molybdenum cofactor synthesis; PFAM: Molybdopterin binding; MoeA, N-terminal region, domain I/II; MoeA, C-terminal, domain IV YP_004792847.1 KEGG: smt:Smal_2243 bifunctional molybdenum cofactor biosynthesis protein MoaC/MogA; TIGRFAM: Molybdopterin cofactor biosynthesis MoaC region; Molybdenum cofactor synthesis; PFAM: Molybdopterin cofactor biosynthesis MoaC region; Molybdopterin binding YP_004792848.1 TIGRFAM: Molybdenum cofactor biosynthesis protein A; PFAM: Molybdenum cofactor synthesis C-terminal; Radical SAM; KEGG: smt:Smal_2244 molybdenum cofactor biosynthesis protein A; SMART: Elongator protein 3/MiaB/NifB YP_004792849.1 KEGG: smt:Smal_2245 ribonucleotide reductase subunit alpha YP_004792850.1 KEGG: smt:Smal_2246 hypothetical protein YP_004792851.1 KEGG: smt:Smal_2247 hypothetical protein YP_004792852.1 KEGG: smt:Smal_2248 hypothetical protein YP_004792853.1 KEGG: sli:Slin_3476 hypothetical protein YP_004792854.1 PFAM: Cation efflux protein; KEGG: pmy:Pmen_1162 cation diffusion facilitator family transporter YP_004792855.1 KEGG: mea:Mex_1p2602 heavy metal resistance transcriptional regulator HmrR, MerR family; PFAM: Transcription regulator MerR, DNA binding; HTH transcriptional regulator, MerR; SMART: HTH transcriptional regulator, MerR YP_004792856.1 KEGG: sml:Smlt0179 arsenic resistance ArsH-like protein; TIGRFAM: Arsenate resistance ArsH; PFAM: NADPH-dependent FMN reductase YP_004792857.1 KEGG: sml:Smlt0178 ArsR family transcriptional regulator; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR YP_004792858.1 KEGG: sml:Smlt0177 arsenate reductase ArsC; PFAM: Protein-tyrosine phosphatase, low molecular weight; SMART: Protein-tyrosine phosphatase, low molecular weight YP_004792859.1 KEGG: sml:Smlt0176 arsenite transmembrane efflux pump transporter protein; TIGRFAM: Arsenical-resistance protein ACR3; PFAM: Bile acid:sodium symporter YP_004792860.1 KEGG: smt:Smal_2257 hypothetical protein YP_004792863.1 KEGG: rcu:RCOM_1965460 hypothetical protein YP_004792864.1 KEGG: psu:Psesu_2108 hypothetical protein YP_004792865.1 KEGG: smt:Smal_2260 hypothetical protein YP_004792866.1 KEGG: smt:Smal_2261 hypothetical protein YP_004792867.1 PFAM: Diacylglycerol kinase, prokaryotic; KEGG: smt:Smal_2262 diacylglycerol kinase YP_004792868.1 PFAM: Peptidase M14, carboxypeptidase A; KEGG: smt:Smal_2263 hypothetical protein YP_004792869.1 KEGG: smt:Smal_2264 hypothetical protein YP_004792870.1 PFAM: Protein of unknown function DUF802; KEGG: smt:Smal_2265 hypothetical protein YP_004792871.1 PFAM: Outer membrane protein, OmpA/MotB, C-terminal; KEGG: smt:Smal_2266 hypothetical protein YP_004792872.1 KEGG: smt:Smal_2267 hypothetical protein YP_004792873.1 PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: smt:Smal_2269 TonB-dependent receptor YP_004792874.1 KEGG: smt:Smal_2270 hypothetical protein YP_004792875.1 manually curated; KEGG: sml:Smlt2816 hypothetical protein YP_004792876.1 KEGG: smt:Smal_2271 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR YP_004792877.1 TIGRFAM: Amino acid adenylation; KEGG: smt:Smal_2272 enterobactin synthase subunit F; PFAM: AMP-dependent synthetase/ligase; Condensation domain; Phosphopantetheine-binding; Thioesterase YP_004792878.1 PFAM: Phosphopantetheine-binding; KEGG: smt:Smal_2273 phosphopantetheine-binding YP_004792879.1 KEGG: sml:Smlt2820 hydrolase; PFAM: Isochorismatase-like YP_004792880.1 KEGG: smt:Smal_2275 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase YP_004792881.1 TIGRFAM: Isochorismate synthase; KEGG: smt:Smal_2276 isochorismate synthase; PFAM: Chorismate binding, C-terminal YP_004792882.1 PFAM: Major facilitator superfamily MFS-1; KEGG: sml:Smlt2823 major facilitator superfamily tetracycline resistance protein, class A YP_004792883.1 KEGG: smt:Smal_2278 inner membrane protein YP_004792884.1 KEGG: sml:Smlt2825 luciferase-like monooxygenase; TIGRFAM: Luciferase-type oxidoreductase; PFAM: Luciferase-like, subgroup YP_004792885.1 PFAM: GCN5-related N-acetyltransferase; KEGG: smt:Smal_2280 GCN5-related N-acetyltransferase YP_004792886.1 PFAM: Thioredoxin domain; KEGG: sml:Smlt2827 hypothetical protein YP_004792887.1 PFAM: Manganese/iron superoxide dismutase, C-terminal; Manganese/iron superoxide dismutase, N-terminal; KEGG: sml:Smlt2828 superoxide dismutase YP_004792888.1 PFAM: Flavin reductase-like, FMN-binding; KEGG: sml:Smlt2829 flavin reductase YP_004792889.1 KEGG: sml:Smlt2830 hypothetical protein YP_004792890.1 PFAM: Fatty acid desaturase, type 1; KEGG: sml:Smlt2831 transmembrane linoleoyl-CoA desaturase YP_004792891.1 PFAM: Oxidoreductase FAD-binding region; Oxidoreductase FAD/NAD(P)-binding; Ferredoxin; KEGG: sml:Smlt2832 Fe/S oxidoreductase YP_004792892.1 PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: smt:Smal_2287 TetR family transcriptional regulator YP_004792893.1 PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; KEGG: sml:Smlt2835 TonB-dependent outer membrane protein YP_004792894.1 manually curated; KEGG: sml:Smlt2836 hypothetical protein YP_004792895.1 KEGG: smt:Smal_2291 manganese transport regulator MntR; PFAM: Iron dependent repressor; SMART: Iron dependent repressor YP_004792896.1 TIGRFAM: Natural resistance-associated macrophage protein; HAMAP: Manganese transport protein mntH; KEGG: smt:Smal_2292 Mn2+/Fe2+ transporter, NRAMP family; PFAM: Natural resistance-associated macrophage protein YP_004792897.1 KEGG: sml:Smlt2839 thioredoxin YP_004792898.1 KEGG: sml:Smlt2840 flavodoxin; TIGRFAM: Ribonucleotide reductase-associated flavodoxin, PFAM: Flavodoxin/nitric oxide synthase YP_004792899.1 PFAM: Ribonucleotide reductase; KEGG: sml:Smlt2841 ribonucleotide-diphosphate reductase subunit beta YP_004792900.1 KEGG: sml:Smlt2842 ribonucleotide-diphosphate reductase subunit alpha; TIGRFAM: Ribonucleoside-diphosphate reductase, alpha subunit; PFAM: Ribonucleotide reductase large subunit, C-terminal; Ribonucleotide reductase large subunit, N-terminal YP_004792901.1 KEGG: smt:Smal_2297 alcohol dehydrogenase zinc-binding domain-containing protein; PFAM: Alcohol dehydrogenase, zinc-binding; Alcohol dehydrogenase GroES-like YP_004792902.1 PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: sml:Smlt2845 TonB dependent receptor protein YP_004792903.1 KEGG: smt:Smal_2299 choline/carnitine/betaine transporter; TIGRFAM: BCCT transporter; PFAM: BCCT transporter YP_004792904.1 KEGG: smt:Smal_2300 glyoxalase family protein YP_004792905.1 KEGG: sml:Smlt2848 RNA polymerase sigma factor; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2 YP_004792906.1 PFAM: FecR protein; KEGG: smt:Smal_2302 anti-FecI sigma factor FecR YP_004792907.1 PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; Secretin/TonB, short N-terminal; KEGG: smt:Smal_2303 TonB-dependent receptor YP_004792908.1 PFAM: Small multidrug resistance protein; KEGG: smt:Smal_2304 small multidrug resistance protein YP_004792909.1 PFAM: Small multidrug resistance protein; KEGG: smt:Smal_2305 small multidrug resistance protein YP_004792910.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: smt:Smal_2306 LysR family transcriptional regulator YP_004792911.1 PFAM: Peptidase M14, carboxypeptidase A; KEGG: sml:Smlt2857 hypothetical protein YP_004792912.1 KEGG: smt:Smal_2308 TonB-dependent siderophore receptor; TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug YP_004792913.1 PFAM: Chloride channel, voltage gated; Cystathionine beta-synthase, core; KEGG: sml:Smlt2859 transporter transmembrane protein YP_004792914.1 PFAM: MgtC/SapB transporter; KEGG: smt:Smal_2310 MgtC/SapB transporter YP_004792915.1 KEGG: smt:Smal_2311 MerR family transcriptional regulator; PFAM: HTH transcriptional regulator, MerR; Transcription regulator MerR, DNA binding; SMART: HTH transcriptional regulator, MerR YP_004792916.1 PFAM: Methyltransferase type 11; KEGG: smt:Smal_2312 type 11 methyltransferase YP_004792917.1 KEGG: smt:Smal_2313 hypothetical protein YP_004792918.1 PFAM: Outer membrane protein, OmpA/MotB, C-terminal; SmpA/OmlA; KEGG: smt:Smal_2314 OmpA/MotB domain-containing protein YP_004792919.1 PFAM: YadA-like, C-terminal; Haemagluttinin motif; Hep/Hag; KEGG: sml:Smlt2865 haemagglutinin-like protein YP_004792920.1 KEGG: sml:Smlt2866 AraC family transcriptional regulator; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain YP_004792921.1 PFAM: Flp/Fap pilin component; KEGG: sml:Smlt2867 pilin subunit YP_004792922.1 PFAM: Peptidase A24A, prepilin type IV; KEGG: sml:Smlt2868 transmembrane peptidase YP_004792923.1 PFAM: TadE-like; KEGG: sml:Smlt2869 TadE family transmembrane pilus-like protein YP_004792924.1 KEGG: smt:Smal_2320 Flp pilus assembly protein CpaB; TIGRFAM: Pilus assembly, Flp-type CpaB; PFAM: SAF domain YP_004792925.1 PFAM: Type II/III secretion system; KEGG: smt:Smal_2321 type II and III secretion system protein YP_004792926.1 KEGG: sml:Smlt2872 fimbriae assembly protein YP_004792927.1 PFAM: Type II secretion system protein E; KEGG: smt:Smal_2323 type II secretion system protein E YP_004792928.1 PFAM: Type II secretion system F domain; KEGG: smt:Smal_2324 type II secretion system protein YP_004792929.1 PFAM: Type II secretion system F domain; KEGG: smt:Smal_2325 type II secretion system protein YP_004792930.1 KEGG: sml:Smlt2876 TPR repeat-containing protein YP_004792931.1 KEGG: smt:Smal_2327 hypothetical protein YP_004792932.1 PFAM: Protein of unknown function DUF2134, membrane; KEGG: smt:Smal_2328 hypothetical protein YP_004792933.1 KEGG: sml:Smlt2880 hypothetical protein YP_004792934.1 KEGG: smt:Smal_2330 hypothetical protein YP_004792935.1 KEGG: sml:Smlt2882 non-heme chloroperoxidase; PFAM: Alpha/beta hydrolase fold-1 YP_004792936.1 PFAM: Protein of unknown function DUF894, DitE; KEGG: smt:Smal_2332 hypothetical protein YP_004792937.1 KEGG: smt:Smal_2333 hypothetical protein YP_004792938.1 PFAM: Amidohydrolase 3; KEGG: smt:Smal_2334 amidohydrolase 3 YP_004792939.1 PFAM: DoxX; KEGG: sml:Smlt2886 transmembrane protein YP_004792940.1 PFAM: Isochorismatase-like; KEGG: smt:Smal_2336 isochorismatase hydrolase YP_004792941.1 KEGG: sml:Smlt2888 AraC family transcriptional regulator; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain YP_004792942.1 manually curated; PFAM: Two component regulator three Y; Two component regulator propeller; Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor region; ATP-binding region, ATPase-like; KEGG: sml:Smlt2890 two-component system sensor histidine kinase; SMART: ATP-binding region, ATPase-like YP_004792943.1 KEGG: sml:Smlt2891 two-component system response regulator transcriptional regulator; PFAM: Signal transduction response regulator, receiver region; Transcription regulator LuxR, C-terminal; SMART: Signal transduction response regulator, receiver region; Transcription regulator LuxR, C-terminal YP_004792944.1 KEGG: smt:Smal_2341 BAAT/acyl-CoA thioester hydrolase; PFAM: Acyl-CoA thioester hydrolase/bile acid-CoA amino acid N-acetyltransferase; BAAT/Acyl-CoA thioester hydrolase C-terminal YP_004792945.1 KEGG: smt:Smal_2342 LytTR family two component transcriptional regulator; PFAM: LytTr DNA-binding region; Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region YP_004792946.1 PFAM: Signal transduction histidine kinase, internal region; ATP-binding region, ATPase-like; KEGG: smt:Smal_2343 histidine kinase internal region YP_004792947.1 PFAM: Amidohydrolase 1; KEGG: smt:Smal_2344 amidohydrolase YP_004792948.1 KEGG: sml:Smlt2895 ankyrin repeat-containing exported protein YP_004792949.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: smt:Smal_2346 LysR family transcriptional regulator YP_004792950.1 KEGG: smt:Smal_2347 hypothetical protein YP_004792951.1 KEGG: smt:Smal_2348 cytosine deaminase; PFAM: Amidohydrolase 3 YP_004792952.1 KEGG: sml:Smlt2899 hypothetical protein YP_004792953.1 PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: smt:Smal_2353 TonB-dependent receptor YP_004792954.1 KEGG: sml:Smlt2902 hypothetical protein YP_004792955.1 KEGG: smt:Smal_2355 CDP-diacylglycerol pyrophosphatase; PFAM: CDP-diacylglycerol pyrophosphatase, bacterial YP_004792956.1 KEGG: sml:Smlt2904 decarboxylase YP_004792957.1 KEGG: sml:Smlt2905 hypothetical protein YP_004792958.1 KEGG: smt:Smal_2358 hypothetical protein YP_004792959.1 PFAM: Cell wall assembly/cell proliferation coordinating protein, KNR4-like; KEGG: pct:PC1_4181 protein involved in beta-1 3-glucan synthesis-like protein YP_004792960.1 KEGG: smt:Smal_2359 D-lactate dehydrogenase; PFAM: D-lactate dehydrogenase, membrane binding, C-terminal; FAD linked oxidase, N-terminal YP_004792961.1 HAMAP: L-lactate dehydrogenase [cytochrome]; KEGG: smt:Smal_2360 FMN-dependent alpha-hydroxy acid dehydrogenase; PFAM: FMN-dependent dehydrogenase YP_004792962.1 KEGG: sml:Smlt2909 L-lactate dehydrogenase operon regulator; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: HTH transcriptional regulator, GntR YP_004792963.1 KEGG: sml:Smlt2910 L-lactate permease; TIGRFAM: L-lactate permease; PFAM: L-lactate permease YP_004792964.1 PFAM: MgtC/SapB transporter; KEGG: smt:Smal_2363 MgtC/SapB transporter YP_004792965.1 KEGG: sml:Smlt2912 oxidoreductase; PFAM: Short-chain dehydrogenase/reductase SDR YP_004792966.1 KEGG: sml:Smlt2913 AraC family transcriptional regulator; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain YP_004792967.1 TIGRFAM: CocE/NonD hydrolase; KEGG: smt:Smal_2367 X-Pro dipeptidyl-peptidase domain-containing protein YP_004792968.1 KEGG: sml:Smlt2916 hypothetical protein YP_004792969.1 PFAM: Major facilitator superfamily MFS-1; KEGG: sml:Smlt2917 major facilitator superfamily transmembrane transport protein YP_004792970.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: sml:Smlt2918 LysR family transcriptional regulator YP_004792971.1 KEGG: sml:Smlt2919 beta-D-glucosidase; PFAM: Glycoside hydrolase, family 3, N-terminal; Glycoside hydrolase, family 3, C-terminal YP_004792972.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: smt:Smal_2372 glyoxalase/bleomycin resistance protein/dioxygenase YP_004792973.1 SMART: Helix-turn-helix, AraC domain; KEGG: smt:Smal_2373 AraC family transcriptional regulator YP_004792974.1 PFAM: Fatty acid hydroxylase; KEGG: smt:Smal_2374 fatty acid hydroxylase YP_004792975.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: sml:Smlt2923 LysR family transcriptional regulator YP_004792976.1 PFAM: DSBA oxidoreductase; KEGG: sml:Smlt2924 thioredoxin DsbA family YP_004792977.1 PFAM: cyclase; KEGG: smt:Smal_2377 cyclase family protein YP_004792978.1 KEGG: smt:Smal_2378 cell division inhibitor SulA YP_004792979.1 KEGG: smt:Smal_2379 DNA repair nucleotidyltransferase/DNA polymerase-like protein YP_004792980.1 KEGG: smt:Smal_2380 error-prone DNA polymerase; PFAM: Bacterial DNA polymerase III, alpha subunit; PHP, C-terminal; Nucleic acid binding, OB-fold, tRNA/helicase-type; TIGRFAM: DNA polymerase III, alpha subunit; HAMAP: Error-prone DNA polymerase; SMART: Polymerase/histidinol phosphatase, N-terminal YP_004792981.1 KEGG: sml:Smlt2929 hypothetical protein YP_004792982.1 KEGG: smt:Smal_2382 GntR family transcriptional regulator with aminotransferase domain; PFAM: HTH transcriptional regulator, GntR; Aminotransferase, class I/II; SMART: HTH transcriptional regulator, GntR YP_004792983.1 KEGG: sml:Smlt2931 racemase; TIGRFAM: pyridoxal phosphate-dependent enzyme, YBL036C type; PFAM: Alanine racemase, N-terminal YP_004792984.1 PFAM: Glutamine amidotransferase class-I, C-terminal; KEGG: sml:Smlt2932 glutamine amidotransferase class-I YP_004792985.1 KEGG: sml:Smlt2933 hypothetical protein YP_004792986.1 KEGG: smt:Smal_2386 hypothetical protein YP_004792987.1 KEGG: sml:Smlt2935 ECF family sigma factor; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2 YP_004792988.1 PFAM: FecR protein; KEGG: smt:Smal_2388 anti-FecI sigma factor FecR YP_004792989.1 PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; Secretin/TonB, short N-terminal; KEGG: sml:Smlt2937 TonB dependent receptor protein YP_004792990.1 PFAM: Protein of unknown function DUF399; KEGG: smt:Smal_2390 hypothetical protein YP_004792991.1 TIGRFAM: TonB, C-terminal; KEGG: sml:Smlt2939 TonB-like protein YP_004792992.1 PFAM: Endoribonuclease L-PSP; KEGG: sml:Smlt2940 translational inhibitor protein YP_004792993.1 KEGG: sml:Smlt2941 cation efflux transmembrane protein; TIGRFAM: Cation efflux protein; PFAM: Cation efflux protein YP_004792994.1 KEGG: smt:Smal_2393 lysine decarboxylase; PFAM: Orn/Lys/Arg decarboxylase, major region; Orn/Lys/Arg decarboxylase, N-terminal; Orn/Lys/Arg decarboxylase, C-terminal YP_004792995.1 PFAM: Amino acid permease-associated region; KEGG: smt:Smal_2394 arginine:agmatin antiporter YP_004792996.1 PFAM: Porin, alpha proteobacteria type; KEGG: smt:Smal_2395 porin YP_004792997.1 PFAM: Disulphide bond isomerase, DsbC/G, N-terminal; KEGG: smt:Smal_2396 thiol:disulfide interchange protein YP_004792998.1 PFAM: Redoxin; KEGG: smt:Smal_2397 redoxin domain-containing protein YP_004792999.1 KEGG: smt:Smal_2398 cyclic nucleotide-binding protein; PFAM: Helix-turn-helix, AraC type; ThiJ/PfpI; SMART: Helix-turn-helix, AraC domain YP_004793000.1 KEGG: smt:Smal_2399 MerR family transcriptional regulator; PFAM: Transcription regulator MerR, DNA binding; HTH transcriptional regulator, MerR; SMART: HTH transcriptional regulator, MerR YP_004793001.1 PFAM: GCN5-related N-acetyltransferase; KEGG: sml:Smlt2950 acetyltransferase (GNAT) family protein YP_004793002.1 PFAM: Protein of unknown function DUF159; KEGG: smt:Smal_2401 hypothetical protein YP_004793003.1 KEGG: smt:Smal_2402 response regulator receiver and unknown domain-containing protein; PFAM: Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region YP_004793004.1 PFAM: GCN5-related N-acetyltransferase; KEGG: smt:Smal_2403 GCN5-related N-acetyltransferase YP_004793005.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate cyclase, predicted; KEGG: sml:Smlt2953 transmembrane GGDEF domain regulatory protein; SMART: Diguanylate cyclase, predicted YP_004793006.1 TIGRFAM: PAS; PFAM: Chemotaxis methyl-accepting receptor, signalling; PAS fold-3; KEGG: sml:Smlt2954 methyl-accepting chemotaxis protein; SMART: Chemotaxis methyl-accepting receptor, signalling; PAC motif; PAS YP_004793007.1 KEGG: smt:Smal_2407 hypothetical protein YP_004793009.1 KEGG: smt:Smal_2408 hypothetical protein YP_004793010.1 KEGG: pfl:PFL_2556 outer membrane efflux protein; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT; PFAM: Outer membrane efflux protein YP_004793011.1 KEGG: pfs:PFLU3937 hypothetical protein; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD YP_004793012.1 PFAM: Acriflavin resistance protein; KEGG: pfl:PFL_2558 AcrB/AcrD/AcrF family protein YP_004793013.1 KEGG: smt:Smal_0918 integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase-like; HAMP linker domain; SMART: ATP-binding region, ATPase-like; HAMP linker domain YP_004793014.1 KEGG: pfs:PFLU2572 two-component response regulator transcriptional regulatory protein; PFAM: Signal transduction response regulator, receiver region; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver region YP_004793015.1 TIGRFAM: Diguanylate cyclase, predicted; PAS; PFAM: Diguanylate cyclase, predicted; PAS fold-3; PAS fold; PAS fold-4; KEGG: sml:Smlt2959 GGDEF PAS signalling domain-containing protein; SMART: Diguanylate cyclase, predicted; PAC motif; PAS YP_004793016.1 KEGG: sml:Smlt2960 transcription accessory protein; PFAM: Tex-like protein, N-terminal; Ribosomal protein S1, RNA binding domain; SMART: Resolvase, RNase H-like fold YP_004793017.1 KEGG: smt:Smal_2411 hypothetical protein YP_004793018.1 KEGG: smt:Smal_2412 hypothetical protein YP_004793019.1 PFAM: PspC; KEGG: smt:Smal_2413 phage shock protein C, PspC YP_004793020.1 KEGG: sml:Smlt2963 hypothetical protein YP_004793021.1 KEGG: sml:Smlt2964 polyhydroxyalkanoate synthase subunit C; TIGRFAM: Poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit; PFAM: Alpha/beta hydrolase fold-1 YP_004793022.1 KEGG: smt:Smal_2416 poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit; TIGRFAM: Poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit; PFAM: Poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit YP_004793023.1 KEGG: sml:Smlt2966 transmembrane CDP-diacylglycerol--serine O-phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol--serine O-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase YP_004793024.1 PFAM: Methyltransferase type 11; KEGG: smt:Smal_2418 type 11 methyltransferase YP_004793025.1 KEGG: sml:Smlt2970 transmembrane drug/sodium antiporter; TIGRFAM: Multi antimicrobial extrusion protein MatE; PFAM: Multi antimicrobial extrusion protein MatE YP_004793026.1 PFAM: Protein of unknown function DUF2239; KEGG: sml:Smlt2971 hypothetical protein YP_004793027.1 PFAM: NUDIX hydrolase domain; KEGG: sml:Smlt2972 7,8-dihydro-8-oxoguanine-triphosphatase YP_004793028.1 PFAM: Protein of unknown function DUF1249; KEGG: smt:Smal_2420 hypothetical protein YP_004793029.1 KEGG: sml:Smlt2974 hypothetical protein; HAMAP: Protein of unknown function DUF299, phosphotransferase, predicted; PFAM: Protein of unknown function DUF299, phosphotransferase, predicted YP_004793030.1 TIGRFAM: Phosphoenolpyruvate synthase; KEGG: smt:Smal_2422 phosphoenolpyruvate synthase; PFAM: Pyruvate phosphate dikinase, PEP/pyruvate-binding; PEP-utilising enzyme, mobile region; PEP-utilising enzyme YP_004793031.1 PFAM: Mechanosensitive ion channel MscS; KEGG: smt:Smal_2423 mechanosensitive ion channel MscS YP_004793032.1 KEGG: smt:Smal_2424 NADH:flavin oxidoreductase/NADH oxidase; PFAM: NADH:flavin oxidoreductase/NADH oxidase, N-terminal YP_004793033.1 KEGG: smt:Smal_2425 LasA YP_004793034.1 HAMAP: Oligoribonuclease; PFAM: Exonuclease, RNase T/DNA polymerase III; KEGG: sml:Smlt2981 oligoribonuclease; SMART: Exonuclease YP_004793035.1 PFAM: CMP/dCMP deaminase, zinc-binding; KEGG: sml:Smlt2982 cytidine and deoxycytidylate deaminase YP_004793036.1 PFAM: Helix-turn-helix, HxlR type; KEGG: sml:Smlt2983 hypothetical protein YP_004793037.1 KEGG: smt:Smal_2429 NAD(P)H dehydrogenase (quinone); PFAM: Flavodoxin-like fold YP_004793038.1 PFAM: GCN5-related N-acetyltransferase; KEGG: sml:Smlt2985 acetyltransferase (GNAT) family protein YP_004793039.1 PFAM: GCN5-related N-acetyltransferase; KEGG: smt:Smal_2432 GCN5-related N-acetyltransferase YP_004793040.1 KEGG: sml:Smlt2988 hypothetical protein YP_004793041.1 KEGG: sml:Smlt2989 hypothetical protein YP_004793042.1 KEGG: sml:Smlt2990 hypothetical protein YP_004793043.1 KEGG: smt:Smal_2436 hypothetical protein YP_004793044.1 PFAM: Glycoside hydrolase, family 19, catalytic; KEGG: smt:Smal_2437 chitinase-like protein YP_004793045.1 KEGG: sml:Smlt2993 hypothetical protein YP_004793048.1 manually curated; KEGG: xcb:XC_1028 hypothetical protein YP_004793049.1 manually curated; KEGG: sml:Smlt2996 hypothetical protein YP_004793050.1 manually curated; KEGG: xcc:XCC3298 hypothetical protein YP_004793051.1 PFAM: Conjugal transfer, TrbL/VirB6; KEGG: sml:Smlt2997 type IV secretion system transmembrane protein YP_004793052.1 KEGG: sml:Smlt2998 hypothetical protein YP_004793053.1 KEGG: smt:Smal_2441 type IV secretion/conjugal transfer ATPase, VirB4 family; TIGRFAM: CagE, TrbE, VirB component of type IV transporter system; PFAM: CagE, TrbE, VirB component of type IV transporter system, conserved region YP_004793054.1 KEGG: smt:Smal_2442 type IV secretory pathway VirB3 family protein; manually curated; PFAM: Type IV secretory pathway, VirB3-like YP_004793055.1 PFAM: Conjugal transfer,TrbC; KEGG: smt:Smal_2443 conjugal transfer protein TrbC YP_004793056.1 PFAM: Lytic transglycosylase-like, catalytic; KEGG: smt:Smal_2444 lytic transglycosylase catalytic YP_004793057.1 KEGG: smt:Smal_2445 P-type DNA transfer ATPase VirB11; TIGRFAM: ATPase, P-type DNA transfer, VirB11; PFAM: Type II secretion system protein E YP_004793058.1 PFAM: Bacterial conjugation TrbI-like protein; KEGG: smt:Smal_2446 conjugation TrbI family protein YP_004793059.1 PFAM: Conjugal transfer, TrbG/VirB9/CagX; KEGG: smt:Smal_2447 conjugal transfer protein TrbG/VirB9/CagX YP_004793060.1 PFAM: VirB8; KEGG: smt:Smal_2448 VirB8 family protein YP_004793061.1 KEGG: sml:Smlt3007 hypothetical protein YP_004793062.1 PFAM: TRAG protein; KEGG: sml:Smlt3008 transmembrane conjugative DNA transfer protein YP_004793063.1 KEGG: smt:Smal_2452 hypothetical protein YP_004793064.1 PFAM: Major facilitator superfamily MFS-1; KEGG: sml:Smlt3011 major facilitator superfamily transmembrane transporter YP_004793065.1 KEGG: sml:Smlt3012 MerR family transcriptional regulator; PFAM: Transcription regulator MerR, DNA binding; HTH transcriptional regulator, MerR; SMART: HTH transcriptional regulator, MerR YP_004793066.1 KEGG: sml:Smlt3013 NADH oxidoreductase; PFAM: NADH:flavin oxidoreductase/NADH oxidase, N-terminal YP_004793067.1 KEGG: smt:Smal_2456 hypothetical protein YP_004793068.1 KEGG: smt:Smal_2457 hypothetical protein YP_004793069.1 KEGG: smt:Smal_2458 hypothetical protein YP_004793070.1 PFAM: Monooxygenase, FAD-binding; KEGG: smt:Smal_2459 monooxygenase FAD-binding YP_004793071.1 PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: sml:Smlt3021 TetR family transcriptional regulator YP_004793072.1 KEGG: sml:Smlt3022 hydroxamate-type ferrisiderophore receptor; TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug YP_004793073.1 KEGG: smt:Smal_2463 winged helix family two component transcriptional regulator; PFAM: Signal transduction response regulator, receiver region; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver region YP_004793074.1 KEGG: smt:Smal_2464 integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; HAMP linker domain; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region YP_004793075.1 KEGG: smt:Smal_2465 hypothetical protein YP_004793076.1 KEGG: smt:Smal_2466 RND family efflux transporter MFP subunit; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD YP_004793077.1 PFAM: ABC transporter-like; Protein of unknown function DUF214, permase predicted; KEGG: smt:Smal_2467 ABC transporter-like protein; SMART: ATPase, AAA+ type, core YP_004793078.1 PFAM: BA14K-like; KEGG: smt:Smal_2468 hypothetical protein YP_004793079.1 PFAM: EF-Hand domain; KEGG: smt:Smal_2469 signal transduction protein YP_004793080.1 KEGG: xac:XAC4318 hypothetical protein YP_004793081.1 KEGG: sml:Smlt3024 hypothetical protein YP_004793082.1 manually curated; KEGG: smt:Smal_2473 hypothetical protein YP_004793083.1 KEGG: sml:Smlt4016 hypothetical protein YP_004793084.1 PFAM: Helix-turn-helix, HxlR type; KEGG: smt:Smal_2474 HxlR family transcriptional regulator YP_004793085.1 KEGG: sml:Smlt3027 alcohol dehydrogenase; TIGRFAM: Quinone oxidoreductase , YhdH/YhfP; PFAM: Alcohol dehydrogenase, zinc-binding; Alcohol dehydrogenase GroES-like YP_004793086.1 KEGG: sml:Smlt3028 hypothetical protein YP_004793087.1 KEGG: smt:Smal_2477 hypothetical protein YP_004793088.1 PFAM: DNA helicase, UvrD/REP type; KEGG: smt:Smal_2478 UvrD/REP helicase YP_004793089.1 KEGG: smt:Smal_2479 hypothetical protein YP_004793090.1 KEGG: smt:Smal_2531 hypothetical protein YP_004793091.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: sml:Smlt3089 LysR family transcriptional regulator YP_004793092.1 KEGG: sml:Smlt3090 ACP phosphodiesterase; HAMAP: FMN-dependent NADH-azoreductase; PFAM: Flavodoxin-like fold YP_004793093.1 KEGG: smt:Smal_2534 variant SH3 domain-containing protein YP_004793094.1 PFAM: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved region; Seryl-tRNA synthetase, class IIa, N-terminal; TIGRFAM: Seryl-tRNA synthetase, class IIa; HAMAP: Seryl-tRNA synthetase; KEGG: sml:Smlt3092 seryl-tRNA synthetase YP_004793095.1 KEGG: sml:Smlt3093 TonB domain-containing protein; TIGRFAM: TonB, C-terminal; PFAM: Gram-negative bacterial tonB protein YP_004793096.1 KEGG: smt:Smal_2537 TonB family protein; TIGRFAM: TonB, C-terminal; PFAM: Gram-negative bacterial tonB protein YP_004793097.1 PFAM: 3-phosphoshikimate 1-carboxyvinyltransferase, core; TIGRFAM: 3-phosphoshikimate 1-carboxyvinyltransferase, subgroup; HAMAP: 3-phosphoshikimate 1-carboxyvinyltransferase, subgroup; KEGG: sml:Smlt3096 3-phosphoshikimate 1-carboxyvinyltransferase YP_004793098.1 KEGG: smt:Smal_2539 chorismate mutase; TIGRFAM: Gamma/beta/epsilon proteobacterial P-protein, chorismate mutase domain; PFAM: Prephenate dehydratase; Chorismate mutase, type II; Amino acid-binding ACT YP_004793099.1 PFAM: Aminotransferase, class V/Cysteine desulfurase; TIGRFAM: Phosphoserine aminotransferase; HAMAP: Phosphoserine aminotransferase; KEGG: smt:Smal_2540 phosphoserine aminotransferase YP_004793100.1 KEGG: sml:Smlt3099 hypothetical protein; PFAM: Forkhead-associated; SMART: Forkhead-associated YP_004793101.1 KEGG: sml:Smlt3100 hypothetical protein; TIGRFAM: polyhydroxyalkanoic acid system protein; PFAM: polyhydroxyalkanoic acid system protein YP_004793102.1 KEGG: sml:Smlt3101 protein associated with polyhydroxyalkanoate inclusion; TIGRFAM: Poly granule associated; PFAM: Poly granule associated YP_004793103.1 KEGG: sml:Smlt3103 transmembrane protein YP_004793104.1 TIGRFAM: Histidine utilization repressor; PFAM: UbiC transcription regulator-associated; HTH transcriptional regulator, GntR; KEGG: sml:Smlt3105 GntR family transcriptional regulator; SMART: HTH transcriptional regulator, GntR YP_004793105.1 KEGG: smt:Smal_2548 N-formimino-L-glutamate deiminase; TIGRFAM: Formiminoglutamate deiminase; PFAM: Amidohydrolase 1 YP_004793106.1 PFAM: Amidohydrolase 1; TIGRFAM: Imidazolonepropionase; HAMAP: Imidazolonepropionase; KEGG: sml:Smlt3107 imidazolonepropionase YP_004793107.1 PFAM: Phenylalanine/histidine ammonia-lyase; TIGRFAM: Histidine ammonia-lyase; HAMAP: Histidine ammonia-lyase; KEGG: sml:Smlt3108 histidine ammonia-lyase YP_004793108.1 KEGG: sml:Smlt3109 hypothetical protein; TIGRFAM: N-formylglutamate deformylase; PFAM: N-formylglutamate amidohydrolase YP_004793109.1 PFAM: Urocanase; TIGRFAM: Urocanase; HAMAP: Urocanate hydratase; KEGG: smt:Smal_2552 urocanate hydratase YP_004793110.1 PFAM: GAD-like; Domain of unknown function DUF1851; KEGG: bam:Bamb_6518 hypothetical protein YP_004793111.1 PFAM: Beta-lactamase-related; KEGG: smt:Smal_2553 beta-lactamase YP_004793112.1 PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: sml:Smlt3115 TonB-dependent receptor YP_004793113.1 KEGG: sml:Smlt3116 transmemrbane protein YP_004793114.1 KEGG: smt:Smal_2557 hypothetical protein YP_004793116.1 PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: smt:Smal_2559 TetR family transcriptional regulator YP_004793117.1 KEGG: smt:Smal_2560 hypothetical protein YP_004793118.1 KEGG: psu:Psesu_1598 hypothetical protein YP_004793119.1 KEGG: smt:Smal_2561 agmatine deiminase; PFAM: Peptidyl-arginine deiminase, Porphyromonas-type YP_004793120.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: smt:Smal_2562 LysR family transcriptional regulator YP_004793121.1 PFAM: Lipase, GDSL; KEGG: smt:Smal_2563 G-D-S-L family lipolytic protein YP_004793122.1 KEGG: smt:Smal_2564 hypothetical protein YP_004793123.1 KEGG: smt:Smal_2565 hypothetical protein YP_004793124.1 KEGG: sml:Smlt3126 hypothetical protein YP_004793126.1 KEGG: smt:Smal_2567 peptidase S9 prolyl oligopeptidase active site domain-containing protein YP_004793127.1 KEGG: sml:Smlt3129 hypothetical protein YP_004793128.1 KEGG: sml:Smlt3130 hypothetical protein YP_004793129.1 KEGG: smt:Smal_2572 hypothetical protein YP_004793130.1 KEGG: smt:Smal_2574 hypothetical protein YP_004793131.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: sml:Smlt3134 LysR family transcriptional regulator YP_004793132.1 KEGG: smt:Smal_2576 alcohol dehydrogenase zinc-binding domain-containing protein; PFAM: Alcohol dehydrogenase, zinc-binding; Alcohol dehydrogenase GroES-like YP_004793133.1 PFAM: Peptidoglycan binding-like; KEGG: xca:xccb100_1696 carboxpeptidase YP_004793134.1 PFAM: Protein of unknown function DUF1311; KEGG: xca:xccb100_3987 hypothetical protein YP_004793135.1 TIGRFAM: PQQ-dependent membrane bound dehydrogenase, glucose/quinate/shikimate related; PFAM: PQQ-dependent enzyme, N-terminal; Pyrrolo-quinoline quinone repeat; PQQ-dependent enzyme, C-terminal; KEGG: sml:Smlt3136 transmembrane quinoprotein glucose dehydrogenase; SMART: Pyrrolo-quinoline quinone beta-propeller repeat YP_004793136.1 SMART: DNA topoisomerase, type IIA, subunit A or C-terminal; TIGRFAM: DNA gyrase, subunit A; KEGG: sml:Smlt3137 DNA gyrase subunit A; PFAM: DNA topoisomerase, type IIA, subunit A or C-terminal; DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel YP_004793137.1 PFAM: Initiation factor 2B related; TIGRFAM: translation initiation factor, aIF-2BI/5-methylthioribose-1-phosphate isomerase; Initiation factor 2B alpha/beta/delta; HAMAP: Methylthioribose-1-phosphate isomerase; KEGG: sml:Smlt3138 methylthioribose-1-phosphate isomerase YP_004793138.1 KEGG: sml:Smlt3139 hypothetical protein YP_004793139.1 TIGRFAM: Lysyl-tRNA synthetase-related; KEGG: sml:Smlt3140 lysyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class II (D/K/N) YP_004793140.1 PFAM: GCN5-related N-acetyltransferase; KEGG: smt:Smal_2582 GCN5-related N-acetyltransferase YP_004793141.1 SMART: NAD-dependent DNA ligase, N-terminal; BRCT; TIGRFAM: NAD-dependent DNA ligase; KEGG: sml:Smlt3142 NAD-dependent DNA ligase LigA; HAMAP: DNA ligase; PFAM: NAD-dependent DNA ligase, adenylation; NAD-dependent DNA ligase, OB-fold; Zinc-finger, NAD-dependent DNA ligase C4-type; BRCT YP_004793142.1 KEGG: sml:Smlt3143 aminotransferase; PFAM: Aminotransferase, class I/II YP_004793143.1 manually curated; KEGG: smt:Smal_3976 hypothetical protein YP_004793144.1 TIGRFAM: Cell division protein ZipA; PFAM: ZipA, C-terminal FtsZ-binding region; KEGG: sml:Smlt3144 cell division protein ZipA; SMART: ZipA, C-terminal FtsZ-binding region YP_004793145.1 KEGG: sml:Smlt3145 chromosome partition protein; TIGRFAM: Chromosome segregation protein SMC; PFAM: RecF/RecN/SMC protein, N-terminal; SMCs flexible hinge YP_004793146.1 TIGRFAM: Ribosomal protein L9, bacteria/chloroplast; HAMAP: Ribosomal protein L9, bacteria/chloroplast; KEGG: smt:Smal_2587 50S ribosomal protein L9; PFAM: Ribosomal protein L9, N-terminal; Ribosomal protein L9, C-terminal YP_004793147.1 TIGRFAM: Ribosomal protein S18; HAMAP: 30S ribosomal protein S18; KEGG: sml:Smlt3149 30S ribosomal protein S18; PFAM: Ribosomal protein S18 YP_004793148.1 KEGG: smt:Smal_2589 30S ribosomal protein S6; TIGRFAM: Ribosomal protein S6; PFAM: Ribosomal protein S6, bacterial-like YP_004793149.1 PFAM: Uncharacterised protein family UPF0167; KEGG: sml:Smlt3152 hypothetical protein YP_004793150.1 KEGG: sml:Smlt3153 iron-sulfur cluster assembly protein; TIGRFAM: FeS cluster insertion; PFAM: FeS cluster biogenesis YP_004793151.1 PFAM: Aminoacyl-tRNA synthetase, class II (D/K/N); Nucleic acid binding, OB-fold, tRNA/helicase-type; TIGRFAM: Asparaginyl-tRNA synthetase, class IIb; HAMAP: Asparaginyl-tRNA synthetase; KEGG: sml:Smlt3154 asparaginyl-tRNA synthetase YP_004793152.1 KEGG: sml:Smlt3155 transmembrane protein YP_004793153.1 KEGG: sml:Smlt3156 hypothetical protein YP_004793154.1 PFAM: Negative transcriptional regulator; KEGG: sml:Smlt3157 regulatory protein YP_004793155.1 KEGG: sml:Smlt3158 carbonic anhydrase; PFAM: Carbonic anhydrase YP_004793156.1 TIGRFAM: 3-hydroxyanthranilic acid dioxygenase; KEGG: sml:Smlt3159 3-hydroxyanthranilate 3,4-dioxygenase; PFAM: 3-hydroxyanthranilic acid dioxygenase YP_004793157.1 TIGRFAM: Kynureninase; KEGG: sml:Smlt3160 hypothetical protein; PFAM: Aminotransferase, class V/Cysteine desulfurase YP_004793158.1 KEGG: sml:Smlt3161 kynurenine 3-monooxygenase, siderophore biosynthesis; PFAM: FAD dependent oxidoreductase YP_004793159.1 PFAM: Exonuclease C-terminal; Exonuclease, RNase T/DNA polymerase III; KEGG: sml:Smlt3162 exonuclease I; SMART: Exonuclease YP_004793160.1 KEGG: sml:Smlt3163 hypothetical protein; TIGRFAM: Conserved hypothetical protein CHP02453; PFAM: Conserved hypothetical protein CHP02453 YP_004793161.1 KEGG: smt:Smal_2602 hypothetical protein YP_004793162.1 KEGG: sml:Smlt3165 5-nucleotidase; PFAM: 5-nucleotidase YP_004793163.1 HAMAP: inorganic polyphosphate/ATP-NAD kinase; KEGG: smt:Smal_2604 inorganic polyphosphate/ATP-NAD kinase; PFAM: ATP-NAD/AcoX kinase YP_004793164.1 PFAM: Bacterial NAD-glutamate dehydrogenase; KEGG: sml:Smlt3167 NAD-dependent glutamate dehydrogenase YP_004793165.1 PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: sml:Smlt3169 TetR family transcriptional regulator YP_004793166.1 KEGG: smt:Smal_2607 RND family efflux transporter MFP subunit; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD YP_004793167.1 KEGG: sml:Smlt3171 multidrug resistance efflux pump; TIGRFAM: Hydrophobe/amphiphile efflux-1 HAE1; PFAM: Acriflavin resistance protein YP_004793168.1 KEGG: sml:Smlt3172 transmembrane protein YP_004793169.1 KEGG: sml:Smlt3173 hypothetical protein YP_004793170.1 KEGG: sml:Smlt3174 butyryl-CoA dehydrogenase; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, central region YP_004793171.1 KEGG: smt:Smal_2610 ArsR family transcriptional regulator; PFAM: Methyltransferase type 11; HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR YP_004793172.1 KEGG: sml:Smlt3176 5-methyltetrahydrofolate--homocysteine methyltransferase; PFAM: Homocysteine S-methyltransferase YP_004793173.1 TIGRFAM: 5-methyltetrahydrofolate--homocysteine methyltransferase; KEGG: smt:Smal_2612 methionine synthase; PFAM: Dihydropteroate synthase, DHPS; Methionine synthase, cobalamin (vitamin B12)-binding module, cap; Cobalamin (vitamin B12)-binding; Vitamin B12 dependent methionine synthase, activation region YP_004793174.1 PFAM: Major facilitator superfamily MFS-1; KEGG: sml:Smlt3178 major facilitator superfamily transport permease YP_004793175.1 PFAM: Protein of unknown function DUF2058; KEGG: sml:Smlt3179 hypothetical protein YP_004793176.1 KEGG: sml:Smlt3179A hypothetical protein; HAMAP: Protein slyX; PFAM: SlyX YP_004793177.1 TIGRFAM: Nucleotide sugar dehydrogenase; KEGG: sml:Smlt3181 nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase, N-terminal; UDP-glucose/GDP-mannose dehydrogenase, dimerisation; UDP-glucose/GDP-mannose dehydrogenase, C-terminal YP_004793178.1 KEGG: sml:Smlt3182 isomerase; PFAM: Peptidyl-prolyl cis-trans isomerase, FKBP-type; Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal YP_004793179.1 KEGG: sml:Smlt3183 vitamin B12 transport protein; PFAM: Glutathione peroxidase YP_004793180.1 KEGG: smt:Smal_2619 hypothetical protein YP_004793181.1 KEGG: sml:Smlt3185 GntR family transcriptional regulator; PFAM: HTH transcriptional regulator, GntR; SMART: HTH transcriptional regulator, GntR YP_004793182.1 KEGG: sml:Smlt3186 ABC transporter ATP-binding protein; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core YP_004793183.1 KEGG: sml:Smlt3187 transmembrane protein YP_004793184.1 KEGG: smt:Smal_2623 hypothetical protein YP_004793185.1 KEGG: smt:Smal_2624 hypothetical protein YP_004793186.1 KEGG: sml:Smlt3190 hypothetical protein YP_004793187.1 HAMAP: Fumarate hydratase class II; KEGG: sml:Smlt3191 fumarate hydratase; PFAM: Fumarate lyase; Fumarase C, C-terminal YP_004793188.1 TIGRFAM: Adenylosuccinate lyase; KEGG: smt:Smal_2627 adenylosuccinate lyase; PFAM: Adenylosuccinate lyase C-terminal; Fumarate lyase YP_004793189.1 KEGG: sml:Smlt3335 penicillin binding protein YP_004793190.1 KEGG: sml:Smlt3195 hypothetical protein; PFAM: Cupin 4; SMART: Transcription factor jumonji/aspartyl beta-hydroxylase YP_004793191.1 PFAM: GCN5-related N-acetyltransferase; KEGG: smt:Smal_2629 GCN5-related N-acetyltransferase YP_004793192.1 TIGRFAM: 2-oxoglutarate dehydrogenase, E1 component; KEGG: sml:Smlt3197 2-oxoglutarate dehydrogenase E1 component; PFAM: Transketolase-like, pyrimidine-binding domain; Dehydrogenase, E1 component YP_004793193.1 TIGRFAM: Dihydrolipoamide succinyltransferase; KEGG: sml:Smlt3198 dihydrolipoamide succinyltransferase; PFAM: 2-oxoacid dehydrogenase acyltransferase, catalytic domain; Biotin/lipoyl attachment; E3 binding YP_004793194.1 TIGRFAM: Dihydrolipoamide dehydrogenase; KEGG: sml:Smlt3199 dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation; Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region YP_004793195.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: pao:Pat9b_4134 transcriptional regulator, LysR family YP_004793196.1 PFAM: Glutathione S-transferase, C-terminal; Glutathione S-transferase, N-terminal; KEGG: axy:AXYL_05847 glutathione S-transferase 2 YP_004793197.1 KEGG: smt:Smal_2634 hypothetical protein YP_004793198.1 KEGG: sml:Smlt3202 exported alkaline phosphatase D; PFAM: Alkaline phosphatase D-related YP_004793199.1 PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: smt:Smal_2636 TonB-dependent receptor YP_004793200.1 KEGG: sml:Smlt3204 replicative DNA helicase; TIGRFAM: DNA helicase, DnaB type; PFAM: DNA helicase, DnaB-like, C-terminal; DNA helicase, DnaB-like, N-terminal YP_004793201.1 PFAM: NADPH-dependent FMN reductase; KEGG: sml:Smlt3205 NADPH-dependent FMN reductase YP_004793202.1 TIGRFAM: Asparagine synthase, glutamine-hydrolyzing; KEGG: smt:Smal_2639 asparagine synthase; PFAM: Asparagine synthase; Glutamine amidotransferase, class-II YP_004793203.1 PFAM: Transketolase, C-terminal; Transketolase-like, pyrimidine-binding domain; Dehydrogenase, E1 component; KEGG: sml:Smlt3207 oxidoreductase/transketolase YP_004793204.1 PFAM: Glutathione S-transferase, N-terminal; Glutathione S-transferase, C-terminal; KEGG: sml:Smlt3208 glutathione S-transferase protein YP_004793205.1 PFAM: GCN5-related N-acetyltransferase; KEGG: sml:Smlt3209 acetyltransferase YP_004793206.1 PFAM: Rickettsia 17kDa surface antigen; KEGG: sml:Smlt3210 outer membrane antigen protein YP_004793207.1 KEGG: sml:Smlt3211 transmembrane protein YP_004793208.1 PFAM: Deoxyribonuclease, TatD-related; KEGG: smt:Smal_2645 hydrolase, TatD family YP_004793209.1 PFAM: UBA/THIF-type NAD/FAD binding fold; KEGG: sml:Smlt3213 ThiF domain-containing protein YP_004793210.1 KEGG: smt:Smal_2647 hypothetical protein YP_004793211.1 PFAM: Rickettsia 17kDa surface antigen; KEGG: sml:Smlt3215 outer membrane antigen lipoprotein YP_004793212.1 KEGG: smt:Smal_2649 cold-shock DNA-binding domain-containing protein; PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein YP_004793213.1 PFAM: Protein of unknown function DUF456; KEGG: smt:Smal_2650 hypothetical protein YP_004793214.1 KEGG: smt:Smal_2651 phospholipase A(1); PFAM: Phospholipase A1 YP_004793215.1 KEGG: smt:Smal_2652 arsenate reductase; TIGRFAM: Arsenate reductase; PFAM: Arsenate reductase-like YP_004793216.1 PFAM: Glutathione S-transferase, N-terminal; KEGG: smt:Smal_2653 glutathione S-transferase domain-containing protein YP_004793217.1 KEGG: sml:Smlt3221 hypothetical protein YP_004793218.1 TIGRFAM: Fe-S type hydro-lyases tartrate/fumarate alpha region; Fe-S type hydro-lyases tartrate/fumarate beta region; KEGG: smt:Smal_2655 hydro-lyase, Fe-S type, tartrate/fumarate subfamily subunit alpha; PFAM: Fe-S type hydro-lyases tartrate/fumarate alpha region; Fe-S type hydro-lyases tartrate/fumarate beta region YP_004793219.1 KEGG: sml:Smlt3223 ECF-sigma factor; TIGRFAM: RNA polymerase sigma-70, ECF type; RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2 YP_004793220.1 KEGG: smt:Smal_2657 alkylhydroperoxidase like protein; TIGRFAM: Alkylhydroperoxidase AhpD core; PFAM: Carboxymuconolactone decarboxylase YP_004793221.1 SMART: ATPase, AAA+ type, core; manually curated; KEGG: sml:Smlt3226 ABC transport protein; PFAM: ABC transporter-like YP_004793222.1 KEGG: smt:Smal_2659 oxidoreductase FAD/NAD(P)-binding domain-containing protein; PFAM: Oxidoreductase FAD/NAD(P)-binding YP_004793223.1 KEGG: smt:Smal_2660 glutathione peroxidase; PFAM: Glutathione peroxidase YP_004793224.1 KEGG: smt:Smal_2661 peptidyl-dipeptidase DCP; PFAM: Peptidase M3A/M3B, thimet/oligopeptidase F YP_004793225.1 KEGG: smt:Smal_2662 cyclopropane fatty acyl phospholipid synthase; PFAM: Cyclopropane-fatty-acyl-phospholipid synthase YP_004793226.1 KEGG: smt:Smal_2663 hypothetical protein YP_004793227.1 KEGG: sml:Smlt3233 hypothetical protein YP_004793228.1 KEGG: sml:Smlt3234 hypothetical protein YP_004793229.1 PFAM: Peptidase S54, rhomboid; KEGG: sml:Smlt3235 transmembrane rhomboid family protein YP_004793230.1 PFAM: Oligopeptide transporter; KEGG: smt:Smal_2667 TGF-beta receptor type I/II extracellular region YP_004793231.1 KEGG: sml:Smlt3237 hypothetical protein YP_004793232.1 PFAM: Manganese/iron superoxide dismutase, C-terminal; Manganese/iron superoxide dismutase, N-terminal; KEGG: sml:Smlt3238 superoxide dismutase YP_004793233.1 PFAM: Guanine-specific ribonuclease N1/T1; KEGG: sml:Smlt3239 ribonuclease YP_004793234.1 PFAM: Barstar (barnase inhibitor); KEGG: sml:Smlt3240 hypothetical protein YP_004793235.1 KEGG: smt:Smal_2672 hypothetical protein YP_004793236.1 KEGG: sml:Smlt3242 iron-sulphur cluster/NifU like protein; HAMAP: Fe/S biogenesis protein, nfuA; PFAM: FeS cluster biogenesis; NIF system FeS cluster assembly, NifU, C-terminal YP_004793237.1 PFAM: Transcriptional coactivator/pterin dehydratase; KEGG: sml:Smlt3243 pterin-4-alpha-carbinolamine dehydratase YP_004793238.1 TIGRFAM: TonB, C-terminal; KEGG: smt:Smal_2675 TonB family protein YP_004793239.1 KEGG: smt:Smal_2676 zinc transporter ZupT; HAMAP: Zinc transporter zupT; PFAM: Zinc/iron permease YP_004793240.1 TIGRFAM: Pseudouridine synthase, RluC/RluD; PFAM: Pseudouridine synthase, RsuA and RluB/C/D/E/F; RNA-binding S4; KEGG: sml:Smlt3246 ribosomal large subunit pseudouridine synthase C; SMART: RNA-binding S4 YP_004793241.1 KEGG: sml:Smlt3247 ribonuclease E; TIGRFAM: Ribonuclease E/G; PFAM: RNA-binding protein AU-1/Ribonuclease E/G; Ribosomal protein S1, RNA binding domain YP_004793242.1 PFAM: Endonuclease/exonuclease/phosphatase; KEGG: sml:Smlt3248 endonuclease/exonuclease/phosphatase family secreted protein YP_004793243.1 PFAM: Coagulation factor 5/8 type, C-terminal; KEGG: sml:Smlt3249 coagulation factor 5/8 type C domain-containing protein YP_004793244.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: sml:Smlt3250 sugar transporter, permease YP_004793245.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: sml:Smlt3251 ABC transporter permease YP_004793246.1 PFAM: Bacterial extracellular solute-binding, family 1; KEGG: smt:Smal_2683 family 1 extracellular solute-binding protein YP_004793247.1 PFAM: Protein of unknown function DUF2329; KEGG: smt:Smal_2684 hypothetical protein YP_004793248.1 PFAM: TonB-dependent receptor, beta-barrel; KEGG: sml:Smlt3254 TonB dependent receptor protein YP_004793249.1 KEGG: smt:Smal_2686 LacI family transcriptional regulator; PFAM: HTH transcriptional regulator, LacI; Periplasmic binding protein/LacI transcriptional regulator; SMART: HTH transcriptional regulator, LacI YP_004793250.1 PFAM: BolA-like protein; KEGG: sml:Smlt3256 BolA-like morphology switching protein YP_004793251.1 PFAM: YCII-related; KEGG: smt:Smal_2688 YCII-like protein YP_004793252.1 KEGG: smt:Smal_2689 chromosome segregation and condensation protein ScpA; HAMAP: Segregation and condensation protein A; PFAM: Prokaryotic chromosome segregation/condensation protein ScpA YP_004793253.1 KEGG: sml:Smlt3260 transcriptional regulator; TIGRFAM: Chromosome segregation/condensation protein ScpB, prokaryote; PFAM: Chromosome segregation/condensation protein ScpB, prokaryote YP_004793254.1 TIGRFAM: Pseudouridine synthase, RsuA and RluB/E/F; PFAM: RNA-binding S4; Pseudouridine synthase, RsuA and RluB/C/D/E/F; KEGG: sml:Smlt3261 ribosomal large subunit pseudouridine synthase B; SMART: RNA-binding S4 YP_004793255.1 KEGG: smt:Smal_2692 AraC protein arabinose-binding/dimerisation; PFAM: AraC protein, arabinose-binding/dimerisation; SMART: Helix-turn-helix, AraC domain YP_004793256.1 PFAM: Major facilitator superfamily MFS-1; KEGG: sml:Smlt3263 transmembrane major facilitator superfamily transport protein YP_004793257.1 KEGG: smt:Smal_2695 hypothetical protein YP_004793258.1 KEGG: sml:Smlt3265 hypothetical protein YP_004793259.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: sml:Smlt3266 carbon-nitrogen hydrolase YP_004793260.1 KEGG: smt:Smal_2698 aminotransferase; PFAM: Aminotransferase, class I/II YP_004793261.1 SMART: ATPase, AAA+ type, core; TIGRFAM: ABC transporter, haem export, CcmA; KEGG: sml:Smlt3268 cytochrome c biogenesis protein CcmA; PFAM: ABC transporter-like YP_004793262.1 KEGG: smt:Smal_2700 heme exporter protein CcmB; TIGRFAM: Cytochrome c-type biogenesis protein CcmB; PFAM: Cytochrome c-type biogenesis protein CcmB YP_004793263.1 KEGG: smt:Smal_2701 heme exporter protein CcmC; TIGRFAM: Cytochrome c-type biogenesis protein CcmC; PFAM: Cytochrome c assembly protein YP_004793264.1 TIGRFAM: Haem exporter protein D (CcmD); KEGG: sml:Smlt3271 hypothetical protein YP_004793265.1 KEGG: sml:Smlt3272 cytochrome c-type biogenesis protein CcmE; HAMAP: CcmE/CycJ protein; PFAM: CcmE/CycJ protein YP_004793266.1 KEGG: sml:Smlt3273 cytochrome c-type biogenesis protein; TIGRFAM: Cytochrome c-type biogenesis protein CcmF; PFAM: Cytochrome c assembly protein YP_004793267.1 KEGG: smt:Smal_2705 periplasmic protein thiol/disulfide oxidoreductase DsbE; TIGRFAM: Periplasmic protein thiol:disulphide oxidoreductase DsbE; PFAM: Redoxin YP_004793268.1 PFAM: Cytochrome C biogenesis protein CcmH; KEGG: smt:Smal_2706 cytochrome c biogenesis protein YP_004793269.1 PFAM: Tetratricopeptide TPR2; KEGG: smt:Smal_2707 tetratricopeptide repeat-containing protein YP_004793270.1 PFAM: Alpha/beta hydrolase fold-1; TIGRFAM: Homoserine O-acetyltransferase; HAMAP: Homoserine O-acetyltransferase; KEGG: sml:Smlt3277 homoserine O-acetyltransferase YP_004793271.1 PFAM: Protein of unknown function DUF1294; KEGG: sml:Smlt3278 transmembrane protein YP_004793272.1 SMART: ATPase, AAA+ type, core; TIGRFAM: ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC; KEGG: sml:Smlt3279 transmembrane ABC transporter ATP-binding protein, cytochrome related; PFAM: ABC transporter-like YP_004793273.1 SMART: ATPase, AAA+ type, core; TIGRFAM: ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydD; KEGG: sml:Smlt3280 ABC transporter ATP-binding protein, cytochrome related; PFAM: ABC transporter-like; ABC transporter, transmembrane region YP_004793274.1 PFAM: Cytochrome bd ubiquinol oxidase, subunit I; KEGG: sml:Smlt3282 cytochrome d ubiquinol oxidase subunit I YP_004793275.1 KEGG: sml:Smlt3283 transmembrane cytochrome bd-II oxidase subunit II; TIGRFAM: Cytochrome bd ubiquinol oxidase, subunit II; PFAM: Cytochrome bd ubiquinol oxidase, subunit II YP_004793276.1 KEGG: smt:Smal_2714 cyd operon protein YbgT; TIGRFAM: Cyd operon protein YbgT; PFAM: Membrane bound YbgT-like YP_004793277.1 PFAM: Major facilitator superfamily MFS-1; KEGG: smt:Smal_2715 major facilitator superfamily protein YP_004793278.1 KEGG: sml:Smlt3289 haemin storage system, HmsH protein YP_004793279.1 PFAM: Polysaccharide deacetylase; KEGG: sml:Smlt3290 hemin storage protein YP_004793280.1 PFAM: Glycosyl transferase, family 2; KEGG: smt:Smal_2718 N-glycosyltransferase YP_004793281.1 KEGG: sml:Smlt3292 haemin storage system, HmsS transmembrane protein YP_004793282.1 PFAM: Aldehyde dehydrogenase; TIGRFAM: Gamma-glutamyl phosphate reductase GPR; HAMAP: Glutamate-5-semialdehyde dehydrogenase; KEGG: sml:Smlt3293 gamma-glutamyl phosphate reductase YP_004793283.1 SMART: Pseudouridine synthase/archaeosine transglycosylase; TIGRFAM: Glutamate 5-kinase, ProB-related; KEGG: smt:Smal_2721 gamma-glutamyl kinase; HAMAP: Glutamate 5-kinase; PFAM: Aspartate/glutamate/uridylate kinase; Pseudouridine synthase/archaeosine transglycosylase YP_004793284.1 PFAM: YCII-related; KEGG: smt:Smal_2722 YCII-like protein YP_004793285.1 PFAM: Fumarate lyase; TIGRFAM: Argininosuccinate lyase; HAMAP: Argininosuccinate lyase; KEGG: sml:Smlt3296 argininosuccinate lyase YP_004793286.1 PFAM: Semialdehyde dehydrogenase, NAD-binding; Semialdehyde dehydrogenase, dimerisation region; TIGRFAM: N-acetyl-gamma-glutamyl-phosphate reductase; HAMAP: N-acetyl-gamma-glutamyl-phosphate reductase; KEGG: sml:Smlt3297 N-acetyl-gamma-glutamyl-phosphate reductase YP_004793287.1 KEGG: smt:Smal_2725 amino-acid acetyltransferase YP_004793288.1 TIGRFAM: Acetylglutamate kinase; KEGG: sml:Smlt3299 acetylglutamate kinase; PFAM: Protein of unknown function DUF619; Aspartate/glutamate/uridylate kinase YP_004793289.1 PFAM: Peptidase M20; Peptidase M20, dimerisation; KEGG: smt:Smal_2727 acetylornithine deacetylase YP_004793290.1 PFAM: Argininosuccinate synthase; TIGRFAM: Argininosuccinate synthase; HAMAP: Argininosuccinate synthase; KEGG: sml:Smlt3301 argininosuccinate synthase YP_004793291.1 KEGG: smt:Smal_2729 N-acetylornithine carbamoyltransferase; PFAM: Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding; Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding region YP_004793292.1 KEGG: smt:Smal_2730 hypothetical protein YP_004793293.1 TIGRFAM: Cysteinyl-tRNA synthetase, class Ia; KEGG: sml:Smlt3305 cysteinyl-tRNA synthetase; PFAM: Cysteinyl-tRNA synthetase, class Ia, N-terminal; Cysteinyl-tRNA synthetase, class Ia, DALR YP_004793294.1 PFAM: Fe-S metabolism associated SufE; KEGG: sml:Smlt3306 Fe/S cluster cysteine desulfuration protein YP_004793295.1 PFAM: Major facilitator superfamily MFS-1; KEGG: smt:Smal_2733 major facilitator superfamily protein YP_004793296.1 TIGRFAM: RNA polymerase-binding, DksA; KEGG: smt:Smal_2734 TraR/DksA family transcriptional regulator YP_004793297.1 PFAM: Protein of unknown function DUF37; manually curated; TIGRFAM: Protein of unknown function DUF37; KEGG: smt:Smal_2735 hypothetical protein; HAMAP: Protein of unknown function DUF37 YP_004793298.1 KEGG: smt:Smal_2736 dihydroorotase; PFAM: Amidohydrolase 1; Amidohydrolase 3 YP_004793299.1 PFAM: Peptidase M23; KEGG: sml:Smlt3311 exported peptidase YP_004793300.1 KEGG: sml:Smlt3312 hypothetical protein YP_004793301.1 TIGRFAM: 2-phosphoglycolate phosphatase, prokaryotic; HAD-superfamily hydrolase, subfamily IA, variant 1; HAD-superfamily hydrolase, subfamily IA, variant 3; KEGG: sml:Smlt3313 phosphoglycolate phosphatase; PFAM: Haloacid dehalogenase-like hydrolase YP_004793302.1 PFAM: Methyltransferase type 11; TIGRFAM: Ubiquinone biosynthesis O-methyltransferase; HAMAP: 3-demethylubiquinone-9 3-methyltransferase; KEGG: sml:Smlt3314 3-demethylubiquinone-9 3-methyltransferase YP_004793303.1 KEGG: sml:Smlt3315 N-ethylammeline chlorohydrolase; PFAM: Amidohydrolase 1 YP_004793304.1 TIGRFAM: Translation elongation factor P; HAMAP: Translation elongation factor P; KEGG: sml:Smlt3316 elongation factor P; PFAM: Elongation factor P, C-terminal; Translation elongation factor P/YeiP, central; Translation elongation factor, KOW-like YP_004793305.1 TIGRFAM: lysine-2,3-aminomutase-related protein; Protein of unknown function DUF160; KEGG: sml:Smlt3317 methylase protein; PFAM: Radical SAM YP_004793306.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; HAMP linker domain; KEGG: sml:Smlt3318 GAF/GGDEF/EAL domain-containing protein; SMART: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; HAMP linker domain YP_004793307.1 KEGG: sml:Smlt3319 anion binding protein YP_004793308.1 KEGG: sml:Smlt3320 SpoU family tRNA/rRNA methyltransferase; TIGRFAM: RNA methyltransferase TrmH, group 1; PFAM: tRNA/rRNA methyltransferase, SpoU YP_004793309.1 KEGG: sml:Smlt3321 inositol-1-monophosphatase; PFAM: Inositol monophosphatase YP_004793310.1 HAMAP: protease htpX; KEGG: sml:Smlt3323 heat shock protein HtpX YP_004793311.1 PFAM: Glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain; TIGRFAM: glutamyl-queuosine tRNA(Asp) synthetase; HAMAP: Glutamyl-Q tRNA(Asp) synthetase; KEGG: sml:Smlt3324 glutamyl tRNA synthetase YP_004793312.1 TIGRFAM: Acetoacetyl-CoA reductase; KEGG: sml:Smlt3325 acetoacetyl-CoA reductase; PFAM: Short-chain dehydrogenase/reductase SDR YP_004793313.1 KEGG: smt:Smal_2751 polyhydroxyalkonate synthesis repressor, PhaR; TIGRFAM: Polyhydroxyalkanoate synthesis repressor PhaR; PFAM: PHA accumulation regulator DNA-binding, N-terminal; PHB accumulation regulatory YP_004793314.1 PFAM: GumN; KEGG: smt:Smal_2752 GumN family protein YP_004793315.1 PFAM: Protein of unknown function DUF1684; KEGG: smt:Smal_2753 hypothetical protein YP_004793316.1 TIGRFAM: DNA mismatch repair protein, N-terminal; HAMAP: DNA mismatch repair protein mutL; KEGG: sml:Smlt3329 DNA mismatch repair protein; PFAM: MutL, C-terminal, dimerisation; DNA mismatch repair protein, C-terminal; ATP-binding region, ATPase-like YP_004793317.1 KEGG: sml:Smlt3330 N-acetylmuramoyl-L-alanine amidase; PFAM: Cell wall hydrolase/autolysin, catalytic; SMART: Cell wall hydrolase/autolysin, catalytic YP_004793318.1 KEGG: sml:Smlt3331 ATP-binding protein; TIGRFAM: Uncharacterised protein family UPF0079, ATPase bacteria; PFAM: Uncharacterised protein family UPF0079, ATPase bacteria YP_004793319.1 KEGG: sml:Smlt3332 carbohydrate kinase protein; TIGRFAM: Uncharacterised protein family, carbohydrate kinase-related; YjeF-related protein, N-terminal; PFAM: Uncharacterised protein family, carbohydrate kinase-related; YjeF-related protein, N-terminal YP_004793320.1 KEGG: sml:Smlt3333 4Fe-4S binding protein; TIGRFAM: 4Fe-4S cluster binding; PFAM: Domain of unknown function DUF1730 YP_004793321.1 TIGRFAM: Exonuclease VII, large subunit; HAMAP: Exodeoxyribonuclease 7 large subunit; KEGG: sml:Smlt3334a2 exodeoxyribonuclease VII large subunit; PFAM: Exonuclease VII, large subunit, C-terminal; Nucleic acid binding, OB-fold, tRNA/helicase-type YP_004793322.1 PFAM: Peptidase M48, Ste24p; KEGG: sml:Smlt3336 exported peptidase YP_004793323.1 PFAM: Sulphatase-modifying factor; KEGG: sml:Smlt3337 hypothetical protein YP_004793324.1 SMART: 3'-5' exonuclease; TIGRFAM: Ribonuclease D; KEGG: sml:Smlt3338 ribonuclease D; PFAM: 3'-5' exonuclease YP_004793325.1 KEGG: sml:Smlt3339 hypothetical protein YP_004793326.1 PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: sml:Smlt3340 TonB dependent receptor protein YP_004793327.1 PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: smt:Smal_2765 TetR family transcriptional regulator YP_004793328.1 PFAM: Xylose isomerase, TIM barrel domain; AP endonuclease, family 2, C-terminal; KEGG: smt:Smal_2766 xylose isomerase domain-containing protein YP_004793329.1 KEGG: smt:Smal_2767 alpha/beta hydrolase fold domain-containing protein; PFAM: Alpha/beta hydrolase fold-1 YP_004793330.1 KEGG: smt:Smal_2768 alpha/beta hydrolase fold-3 domain-containing protein YP_004793331.1 KEGG: smt:Smal_2769 hypothetical protein YP_004793332.1 KEGG: sml:Smlt3344 hypothetical protein YP_004793333.1 KEGG: smt:Smal_2771 short chain dehydrogenase; PFAM: Short-chain dehydrogenase/reductase SDR YP_004793334.1 SMART: Helix-turn-helix, AraC domain; manually curated; KEGG: smt:Smal_2772 AraC family transcriptional regulator; TIGRFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding; PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding; Helix-turn-helix, AraC type; Methylguanine DNA methyltransferase, ribonuclease-like YP_004793335.1 KEGG: smt:Smal_2773 alcohol dehydrogenase zinc-binding domain-containing protein; PFAM: Alcohol dehydrogenase, zinc-binding YP_004793336.1 PFAM: Lipocalin-like; KEGG: smt:Smal_2775 lipocalin family protein YP_004793337.1 KEGG: smt:Smal_2776 hypothetical protein YP_004793338.1 KEGG: sml:Smlt3352 acyl-CoA dehydrogenase oxidoreductase protein; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central region; Acyl-CoA dehydrogenase, N-terminal YP_004793339.1 KEGG: sml:Smlt3354 hnh endonuclease (fragment); PFAM: HNH endonuclease; SMART: HNH nuclease YP_004793340.1 PFAM: Transketolase-like, pyrimidine-binding domain; Transketolase, C-terminal; TIGRFAM: Deoxyxylulose-5-phosphate synthase; HAMAP: Deoxyxylulose-5-phosphate synthase; KEGG: sml:Smlt3355 1-deoxy-D-xylulose-5-phosphate synthase YP_004793341.1 KEGG: smt:Smal_2780 hypothetical protein YP_004793342.1 manually curated; KEGG: sml:Smlt3358 hypothetical protein YP_004793343.1 KEGG: sml:Smlt0195 LuxR family two component response regulator; PFAM: Signal transduction response regulator, receiver region; Transcription regulator LuxR, C-terminal; SMART: Transcription regulator LuxR, C-terminal; Signal transduction response regulator, receiver region YP_004793344.1 KEGG: smt:Smal_3683 hypothetical protein YP_004793345.1 KEGG: smt:Smal_3682 hypothetical protein; TIGRFAM: Small GTP-binding protein; PFAM: Protein of unknown function, ATP binding YP_004793346.1 PFAM: Dynein light chain-related; KEGG: smt:Smal_3681 roadblock/LC7 family protein YP_004793347.1 KEGG: sml:Smlt4269 hypothetical protein YP_004793349.1 KEGG: xfa:XF2539 fimbrial protein YP_004793350.1 KEGG: abc:ACICU_03380 Tfp pilus assembly protein, major pilin PilA YP_004793352.1 KEGG: sml:Smlt3359 hypothetical protein YP_004793353.1 KEGG: smt:Smal_2783 hypothetical protein YP_004793354.1 KEGG: sml:Smlt3360 hypothetical protein YP_004793355.1 PFAM: Protein of unknown function DUF1653; KEGG: smt:Smal_2785 hypothetical protein YP_004793356.1 PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: smt:Smal_2786 TetR family transcriptional regulator YP_004793357.1 PFAM: Small multidrug resistance protein; KEGG: smt:Smal_2787 small multidrug resistance protein YP_004793358.1 KEGG: smt:Smal_2788 hypothetical protein; HAMAP: Protein of unknown function DUF1328; PFAM: Protein of unknown function DUF1328 YP_004793359.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: smt:Smal_2789 lysine exporter protein LysE/YggA YP_004793360.1 HAMAP: ATP-dependent Clp protease proteolytic subunit; KEGG: smt:Smal_2790 ATP-dependent Clp protease proteolytic subunit; PFAM: Peptidase S14, ClpP YP_004793361.1 PFAM: Polyketide cyclase/dehydrase; KEGG: smt:Smal_2791 hypothetical protein YP_004793362.1 KEGG: smt:Smal_2792 ArsR family transcriptional regulator; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR YP_004793363.1 manually curated; KEGG: smt:Smal_2794 hypothetical protein YP_004793364.1 KEGG: smt:Smal_2795 hypothetical protein YP_004793365.1 PFAM: GCN5-related N-acetyltransferase; KEGG: sml:Smlt3370 acetyltransferase YP_004793366.1 SMART: Protein-tyrosine phosphatase, low molecular weight; KEGG: hypothetical protein YP_004793367.1 KEGG: pen:PSEEN3596 hypothetical protein YP_004793368.1 KEGG: smt:Smal_2798 MerR family transcriptional regulator; PFAM: HTH transcriptional regulator, MerR; SMART: HTH transcriptional regulator, MerR YP_004793369.1 SMART: Histone-like bacterial DNA-binding protein; TIGRFAM: Integration host factor, alpha subunit; KEGG: smt:Smal_2799 integration host factor subunit alpha; HAMAP: Integration host factor, alpha subunit; PFAM: Histone-like bacterial DNA-binding protein YP_004793370.1 TIGRFAM: Phenylalanyl-tRNA synthetase, class IIc, beta subunit, bacterial; HAMAP: Phenylalanyl-tRNA synthetase, class IIc, beta subunit, bacterial; KEGG: sml:Smlt3373 phenylalanyl-tRNA synthetase subunit beta YP_004793371.1 TIGRFAM: Phenylalanyl-tRNA synthetase, class IIc, alpha subunit; HAMAP: Phenylalanyl-tRNA synthetase alpha chain; KEGG: sml:Smlt3374 phenylalanyl-tRNA synthetase subunit alpha; PFAM: Phenylalanyl-tRNA synthetase alpha chain; Phenylalanyl-tRNA synthetase, class II, N-terminal YP_004793372.1 TIGRFAM: Ribosomal protein L20; HAMAP: Ribosomal protein L20; KEGG: sml:Smlt3375 50S ribosomal protein L20; PFAM: Ribosomal protein L20 YP_004793373.1 TIGRFAM: Ribosomal protein L35; HAMAP: Ribosomal protein L35; KEGG: smt:Smal_2803 50S ribosomal protein L35; PFAM: Ribosomal protein L35 YP_004793374.1 TIGRFAM: Translation initiation factor 3; HAMAP: Translation initiation factor IF-3; KEGG: sml:Smlt3377 translation initiation factor IF-3; PFAM: Translation initiation factor 3, N-terminal; Translation initiation factor 3, C-terminal YP_004793375.1 KEGG: sml:Smlt3378 threonyl-tRNA synthetase; TIGRFAM: Threonyl-tRNA synthetase, class IIa; PFAM: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved region; Threonyl/alanyl tRNA synthetase, SAD; TGS; Anticodon-binding YP_004793376.1 KEGG: smt:Smal_2806 hypothetical protein YP_004793377.1 KEGG: smt:Smal_2807 hypothetical protein YP_004793378.1 PFAM: PepSY-associated TM helix; KEGG: sml:Smlt3381 transmembrane protein YP_004793379.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sml:Smlt3382 glyoxyalase/bleomycin resistance protein YP_004793380.1 PFAM: Glycoside hydrolase, family 18, catalytic domain; KEGG: sml:Smlt3383 chitinase A1; SMART: Chitinase II YP_004793381.1 PFAM: Exoribonuclease, phosphorolytic domain 1; Exoribonuclease, phosphorolytic domain 2; Polynucleotide phosphorylase, phosphorolytic RNA-binding, bacterial/organelle-type; K Homology, type 1, subgroup; Ribosomal protein S1, RNA binding domain; TIGRFAM: Polyribonucleotide nucleotidyltransferase; HAMAP: Polyribonucleotide nucleotidyltransferase; KEGG: sml:Smlt3385 polynucleotide phosphorylase/polyadenylase YP_004793382.1 KEGG: smt:Smal_2812 30S ribosomal protein S15; TIGRFAM: Ribosomal protein S15, bacterial-type; PFAM: Ribosomal protein S15 YP_004793383.1 TIGRFAM: Pseudouridine synthase II, TruB, N-terminal, bacterial-type; HAMAP: tRNA pseudouridine synthase B; KEGG: sml:Smlt3387 tRNA pseudouridine synthase B; PFAM: Pseudouridine synthase II, TruB, N-terminal YP_004793384.1 TIGRFAM: Ribosome-binding factor A; HAMAP: Ribosome-binding factor A; KEGG: sml:Smlt3388 ribosome-binding factor A; PFAM: Ribosome-binding factor A YP_004793385.1 KEGG: sml:Smlt3389 translation initiation factor IF-2; TIGRFAM: Initiation factor 2; Small GTP-binding protein; PFAM: Protein synthesis factor, GTP-binding; Translation initiation factor IF-2, N-terminal; Initiation factor 2 associated region, bacterial; Translation elongation factor EFTu/EF1A, domain 2 YP_004793386.1 KEGG: smt:Smal_2816 transcription elongation factor NusA; TIGRFAM: Transcription termination factor NusA; Transcription termination factor NusA, C-terminal duplication; PFAM: Transcription factor NusA, N-terminal; Ribosomal protein S1, RNA binding domain YP_004793387.1 KEGG: smt:Smal_2817 hypothetical protein; HAMAP: Uncharacterised protein family UPF0090, bacteria; PFAM: Uncharacterised protein family UPF0090 YP_004793388.1 PFAM: NADH:ubiquinone/plastoquinone oxidoreductase; TIGRFAM: NADH-quinone oxidoreductase, chain N; HAMAP: NAD(P)H-quinone oxidoreductase subunit 2; KEGG: smt:Smal_2818 NADH dehydrogenase subunit N YP_004793389.1 TIGRFAM: NADH-quinone oxidoreductase, chain M; KEGG: sml:Smlt3393 NADH dehydrogenase subunit M; PFAM: NADH:ubiquinone/plastoquinone oxidoreductase YP_004793390.1 TIGRFAM: NADH-plastoquinone oxidoreductase, chain 5; KEGG: sml:Smlt3394 NADH dehydrogenase subunit L; PFAM: NADH:ubiquinone/plastoquinone oxidoreductase; NADH:ubiquinone oxidoreductase, chain 5/L, N-terminal YP_004793391.1 KEGG: sml:Smlt3395 NADH dehydrogenase subunit K; HAMAP: NAD(P)H-quinone oxidoreductase subunit 4L; PFAM: NADH:ubiquinone/quinone oxidoreductase, chain 4L YP_004793392.1 PFAM: NADH:ubiquinone/plastoquinone oxidoreductase, chain 6; KEGG: sml:Smlt3396 NADH dehydrogenase subunit J YP_004793393.1 PFAM: 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; TIGRFAM: NADH-quinone oxidoreductase, chain I; HAMAP: NADH-quinone oxidoreductase, chain I; KEGG: sml:Smlt3397 NADH dehydrogenase subunit I YP_004793394.1 HAMAP: NAD(P)H-quinone oxidoreductase subunit 1; KEGG: sml:Smlt3398 NADH dehydrogenase subunit H; PFAM: NADH:ubiquinone oxidoreductase, subunit 1 YP_004793395.1 TIGRFAM: NADH:ubiquinone oxidoreductase, subunit G; KEGG: smt:Smal_2825 NADH dehydrogenase subunit G; PFAM: NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding; Ferredoxin; Molybdopterin oxidoreductase; Molydopterin dinucleotide-binding region YP_004793396.1 TIGRFAM: NADH ubiquinone oxidoreductase, F subunit; KEGG: sml:Smlt3400 NADH dehydrogenase I chain F; PFAM: NADH:ubiquinone oxidoreductase, 51kDa subunit; Soluble ligand binding domain; NADH ubiquinone oxidoreductase, F subunit, iron sulphur binding YP_004793397.1 TIGRFAM: NADH:ubiquinone oxidoreductase, 24kDa subunit; KEGG: sml:Smlt3401 NADH dehydrogenase subunit E; PFAM: NADH:ubiquinone oxidoreductase, 24kDa subunit YP_004793398.1 PFAM: NADH-quinone oxidoreductase, subunit D; TIGRFAM: NADH dehydrogenase I, D subunit; HAMAP: NAD(P)H-quinone oxidoreductase subunit H; KEGG: sml:Smlt3402 NADH dehydrogenase subunit D YP_004793399.1 KEGG: smt:Smal_2829 NADH dehydrogenase subunit C; HAMAP: NAD(P)H-quinone oxidoreductase subunit J; PFAM: NADH:ubiquinone oxidoreductase, 30kDa subunit YP_004793400.1 PFAM: NADH:ubiquinone oxidoreductase-like, 20kDa subunit; TIGRFAM: NADH:ubiquinone oxidoreductase, 20kDa subunit; HAMAP: NAD(P)H-quinone oxidoreductase subunit K; KEGG: smt:Smal_2830 NADH dehydrogenase subunit B YP_004793401.1 PFAM: NADH:ubiquinone/plastoquinone oxidoreductase, chain 3; KEGG: smt:Smal_2831 NADH dehydrogenase subunit A YP_004793402.1 KEGG: sml:Smlt3406 preprotein translocase subunit SecG; TIGRFAM: Preprotein translocase SecG subunit; PFAM: Preprotein translocase SecG subunit YP_004793403.1 TIGRFAM: Triosephosphate isomerase; KEGG: sml:Smlt3407 triosephosphate isomerase; PFAM: Triosephosphate isomerase YP_004793404.1 PFAM: Oxoglutarate/iron-dependent oxygenase; KEGG: sml:Smlt3409 flavonol synthase/dioxygenase YP_004793405.1 PFAM: Sulfatase; KEGG: sml:Smlt3410 transmembrane protein YP_004793406.1 PFAM: Glycosyl transferase, group 1; KEGG: sml:Smlt3411 lipopolysaccharide core biosynthesis glycosyl transferase YP_004793407.1 PFAM: Polysaccharide deacetylase; KEGG: sml:Smlt3412 lipopolysaccharide core oligosaccharide biosynthesis protein YP_004793408.1 TIGRFAM: UDP-glucose 4-epimerase; KEGG: smt:Smal_2838 UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase YP_004793409.1 KEGG: cak:Caul_3382 hypothetical protein YP_004793410.1 TIGRFAM: Phosphoglucosamine mutase; KEGG: sml:Smlt3414 phosphoglucosamine mutase; PFAM: Alpha-D-phosphohexomutase, alpha/beta/alpha domain I; Alpha-D-phosphohexomutase, alpha/beta/alpha domain II; Alpha-D-phosphohexomutase, alpha/beta/alpha domain III; Alpha-D-phosphohexomutase, C-terminal YP_004793411.1 TIGRFAM: Acetyl-CoA carboxylase carboxyl transferase, beta subunit; KEGG: sml:Smlt3415 acetyl-CoA carboxylase subunit beta; PFAM: Carboxyl transferase YP_004793412.1 PFAM: Tryptophan synthase, alpha chain; TIGRFAM: Tryptophan synthase, alpha chain; HAMAP: Tryptophan synthase, alpha chain; KEGG: sml:Smlt3417 tryptophan synthase subunit alpha YP_004793413.1 KEGG: sml:Smlt3418 hypothetical protein YP_004793414.1 PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit; TIGRFAM: Tryptophan synthase, beta chain; HAMAP: Tryptophan synthase beta chain; KEGG: sml:Smlt3419 tryptophan synthase subunit beta YP_004793415.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: smt:Smal_2844 LysR family transcriptional regulator YP_004793416.1 PFAM: Toxic anion resistance; KEGG: smt:Smal_2845 toxic anion resistance family protein YP_004793417.1 KEGG: smt:Smal_2846 signal recognition particle-docking protein FtsY YP_004793418.1 KEGG: smt:Smal_2847 hypothetical protein YP_004793419.1 PFAM: Band 7 protein; KEGG: smt:Smal_2848 hypothetical protein YP_004793420.1 KEGG: smt:Smal_2849 hypothetical protein YP_004793421.1 KEGG: sml:Smlt3423 N-(5'-phosphoribosyl)anthranilate isomerase; PFAM: N-(5'phosphoribosyl)anthranilate isomerase (PRAI) YP_004793422.1 PFAM: Pseudouridine synthase I, TruA, alpha/beta domain; TIGRFAM: Pseudouridine synthase I, TruA; HAMAP: Pseudouridine synthase I, TruA; KEGG: sml:Smlt3424 tRNA pseudouridine synthase A YP_004793423.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sml:Smlt3425 glyoxalase/bleomycin resistance protein YP_004793424.1 TIGRFAM: Motility protein FimV, N-terminal; Motility protein FimV, C-terminal; KEGG: sml:Smlt3426 FimV protein YP_004793425.1 TIGRFAM: Aspartate-semialdehyde dehydrogenase, bacterial; KEGG: smt:Smal_2854 aspartate-semialdehyde dehydrogenase; PFAM: Semialdehyde dehydrogenase, dimerisation region; Semialdehyde dehydrogenase, NAD-binding YP_004793426.1 KEGG: sml:Smlt3428 2-ketogluconate reductase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region YP_004793427.1 TIGRFAM: Chorismate synthase; KEGG: sml:Smlt3429 chorismate synthase; PFAM: Chorismate synthase YP_004793428.1 TIGRFAM: Ribosomal protein L3-specific, glutamine-N5-methyltransferase; Modification methylase HemK; KEGG: sml:Smlt3430 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; PFAM: Methyltransferase small YP_004793429.1 PFAM: Copper chaperone SCO1/SenC; KEGG: sml:Smlt3431 exported Sco1/SenC family protein YP_004793430.1 PFAM: Phosphatidylserine decarboxylase-related; TIGRFAM: Phosphatidylserine decarboxylase; HAMAP: Phosphatidylserine decarboxylase proenzyme; KEGG: smt:Smal_2859 phosphatidylserine decarboxylase YP_004793431.1 PFAM: Protein of unknown function DUF1260; KEGG: smt:Smal_2860 hypothetical protein YP_004793432.1 KEGG: sml:Smlt3434 membrane-bound lytic murein transglycosylase D; PFAM: Lytic transglycosylase-like, catalytic; Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding Lysin subgroup YP_004793433.1 PFAM: Protein of unknown function DUF853, nucleotide triphosphate hydrolase, KEGG: sml:Smlt3435 ATP-binding protein YP_004793434.1 TIGRFAM: Transcription elongation factor GreB, prokaryotic; HAMAP: Transcription elongation factor greA; KEGG: sml:Smlt3436 transcription elongation factor GreB; PFAM: Transcription elongation factor, GreA/GreB region, prokaryotic YP_004793435.1 KEGG: sml:Smlt3437 hypothetical protein YP_004793436.1 SMART: Elongator protein 3/MiaB/NifB; TIGRFAM: Ribosomal protein S12 methylthiotransferase RimO; Methylthiotransferase; KEGG: sml:Smlt3438 ribosomal protein S12 methylthiotransferase; HAMAP: Ribosomal protein S12 methylthiotransferase RimO; PFAM: Methylthiotransferase, N-terminal; Radical SAM YP_004793438.1 KEGG: smt:Smal_2488 carbohydrate-binding CenC domain-containing protein YP_004793439.1 KEGG: lhk:LHK_01758 hypothetical protein YP_004793440.1 PFAM: Protein of unknown function DUF1833; KEGG: lhk:LHK_01759 hypothetical protein YP_004793442.1 KEGG: bbr:BB1706 tail component of prophage; TIGRFAM: Phage tail tape measure protein; PFAM: Phage tail tape measure protein, conserved region YP_004793444.1 KEGG: hch:HCH_04547 hypothetical protein YP_004793445.1 KEGG: ecm:EcSMS35_1195 hypothetical protein YP_004793446.1 KEGG: sml:Smlt3439 carboxymethylenebutenolidase; PFAM: Dienelactone hydrolase YP_004793447.1 PFAM: Histidine triad (HIT) protein; KEGG: smt:Smal_2867 histidine triad (HIT) protein YP_004793448.1 KEGG: smt:Smal_2868 hypothetical protein YP_004793449.1 TIGRFAM: Deoxycytidine triphosphate deaminase; HAMAP: Deoxycytidine triphosphate deaminase; KEGG: sml:Smlt3442 deoxycytidine triphosphate deaminase YP_004793450.1 PFAM: ATPase-like, ParA/MinD; KEGG: smt:Smal_2870 hypothetical protein YP_004793451.1 PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: sml:Smlt3444 TonB dependent receptor protein YP_004793452.1 PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: smt:Smal_2872 TonB-dependent receptor YP_004793453.1 KEGG: smt:Smal_2873 peptidase S9 prolyl oligopeptidase active site domain-containing protein YP_004793454.1 KEGG: smt:Smal_2874 endothelin-converting enzyme 1; PFAM: Peptidase M13; Peptidase M13, neprilysin, C-terminal YP_004793455.1 KEGG: sml:Smlt3450 exported endopeptidase; PFAM: Peptidase M13; Peptidase M13, neprilysin, C-terminal YP_004793456.1 PFAM: 3-demethylubiquinone-9 3-O-methyltransferase; KEGG: sml:Smlt3451 3-demethylubiquinone-9 3-methyltransferase YP_004793457.1 PFAM: FAD dependent oxidoreductase; KEGG: smt:Smal_2878 amine oxidase YP_004793458.1 PFAM: Peptidase S54, rhomboid; KEGG: smt:Smal_2879 rhomboid family protein YP_004793459.1 KEGG: sml:Smlt3454 DNA-methyltransferase; manually curated; PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding YP_004793460.1 PFAM: Protein of unknown function DUF6, transmembrane; KEGG: sml:Smlt3455 transmembrane protein YP_004793461.1 KEGG: smt:Smal_2883 pyridine nucleotide-disulfide oxidoreductase dimerisation region; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation YP_004793462.1 KEGG: sml:Smlt3457 D-amino acid dehydrogenase small subunit; PFAM: FAD dependent oxidoreductase YP_004793463.1 KEGG: sml:Smlt3458 transmembrane protein YP_004793464.1 PFAM: Peptidyl-prolyl cis-trans isomerase, FKBP-type; KEGG: smt:Smal_2886 FKBP-type peptidylprolyl isomerase YP_004793465.1 PFAM: NLP/P60; KEGG: smt:Smal_2887 NLP/P60 protein YP_004793466.1 PFAM: NLP/P60; KEGG: smt:Smal_2888 NLP/P60 protein YP_004793467.1 PFAM: Sodium:dicarboxylate symporter; KEGG: sml:Smlt3462 sodium:dicarboxylate symport transport protein YP_004793468.1 KEGG: sml:Smlt3463 alkaline phosphatase; PFAM: Alkaline phosphatase; SMART: Alkaline phosphatase YP_004793469.1 KEGG: sml:Smlt3464 hypothetical protein YP_004793470.1 TIGRFAM: Lysidine-tRNA(Ile) synthetase, N-terminal; Lysidine-tRNA(Ile) synthetase, C-terminal; HAMAP: tRNA(Ile)-lysidine synthase; KEGG: smt:Smal_2892 tRNA(Ile)-lysidine synthetase; PFAM: PP-loop; Lysidine-tRNA(Ile) synthetase, substrate-binding domain YP_004793471.1 TIGRFAM: Exonuclease VII, small subunit; HAMAP: Exonuclease VII, small subunit; KEGG: smt:Smal_2893 exodeoxyribonuclease VII small subunit; PFAM: Exonuclease VII, small subunit YP_004793472.1 KEGG: smt:Smal_2894 polyprenyl synthetase; PFAM: Polyprenyl synthetase YP_004793473.1 KEGG: smt:Smal_2895 hypothetical protein YP_004793474.1 PFAM: Peptidase U62, modulator of DNA gyrase; KEGG: sml:Smlt3469 modulator of DNA gyrase YP_004793475.1 KEGG: smt:Smal_2897 hypothetical protein; HAMAP: UPF0307 protein yjgA; PFAM: Uncharacterised protein family UPF0307 YP_004793476.1 PFAM: Peptidase U62, modulator of DNA gyrase; KEGG: sml:Smlt3471 modulator of DNA gyrase protein YP_004793477.1 TIGRFAM: Conserved hypothetical protein CHP02099; KEGG: sml:Smlt3472 hypothetical protein YP_004793478.1 KEGG: sml:Smlt3473 ribonuclease G; TIGRFAM: Ribonuclease E/G; PFAM: RNA-binding protein AU-1/Ribonuclease E/G; Ribosomal protein S1, RNA binding domain YP_004793479.1 TIGRFAM: Maf-like protein; HAMAP: Maf-like protein; KEGG: smt:Smal_2901 maf protein; PFAM: Maf-like protein YP_004793480.1 PFAM: Protein of unknown function DUF541; KEGG: sml:Smlt3475 outer membrane protein YP_004793481.1 KEGG: sml:Smlt3477 TonB domain-containing protein; TIGRFAM: TonB, C-terminal; PFAM: Gram-negative bacterial tonB protein YP_004793482.1 PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: sml:Smlt3478 TonB dependent receptor protein YP_004793483.1 KEGG: smt:Smal_2906 xylanase YP_004793484.1 TIGRFAM: Conserved hypothetical protein CHP00246; HAMAP: Ribosomal RNA large subunit methyltransferase H; KEGG: smt:Smal_2907 rRNA large subunit methyltransferase; PFAM: SPOUT methyltransferase, predicted YP_004793485.1 KEGG: sml:Smlt3481 hypothetical protein; TIGRFAM: Iojap-related protein; PFAM: Iojap-related protein YP_004793486.1 PFAM: Cytidylyltransferase; Nicotinamide mononucleotide adenylyltransferase, C-terminal; TIGRFAM: Probable nicotinate-nucleotide adenylyltransferase; Cytidyltransferase-related; HAMAP: nicotinate-nucleotide adenylyltransferase; KEGG: smt:Smal_2909 nicotinic acid mononucleotide adenylyltransferase YP_004793487.1 KEGG: smt:Smal_2910 DNA polymerase III subunit delta; TIGRFAM: DNA polymerase III, delta subunit; PFAM: DNA polymerase III, delta YP_004793488.1 PFAM: Rare lipoprotein B; KEGG: smt:Smal_2911 rare lipoprotein B YP_004793489.1 TIGRFAM: Leucyl-tRNA synthetase, class Ia, bacterial/mitochondrial; KEGG: sml:Smlt3485 leucyl-tRNA synthetase YP_004793490.1 KEGG: sml:Smlt3486 transmembrane protein YP_004793491.1 KEGG: sml:Smlt3487 thioredoxin protein; TIGRFAM: Thioredoxin; PFAM: Thioredoxin domain YP_004793492.1 KEGG: smt:Smal_2915 peptidoglycan-binding LysM; PFAM: Peptidoglycan-binding lysin domain; FecR protein; SMART: Peptidoglycan-binding Lysin subgroup YP_004793493.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: CHASE2; Diguanylate cyclase, predicted; KEGG: smt:Smal_2916 diguanylate cyclase with CHASE2 sensor; SMART: Diguanylate cyclase, predicted YP_004793494.1 KEGG: smt:Smal_2917 hypothetical protein YP_004793495.1 KEGG: smt:Smal_2918 hypothetical protein YP_004793496.1 KEGG: smt:Smal_2919 hypothetical protein YP_004793497.1 PFAM: Protein of unknown function DUF502; KEGG: sml:Smlt3492 transmembrane protein YP_004793498.1 KEGG: smt:Smal_2921 hypothetical protein; TIGRFAM: Protein of unknown function DUF165; PFAM: Protein of unknown function DUF165 YP_004793499.1 PFAM: Protein of unknown function DUF885, bacterial; KEGG: sml:Smlt3494 hypothetical protein YP_004793500.1 PFAM: Beta-lactamase-related; KEGG: sml:Smlt3495 beta-lactamase YP_004793501.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sml:Smlt3496 glyoxalase/bleomycin resistance protein YP_004793502.1 PFAM: Protein of unknown function DUF2147; KEGG: sml:Smlt3497 hypothetical protein YP_004793503.1 PFAM: Aminoacyl-tRNA synthetase, class I (M); tRNA-binding region; TIGRFAM: Methionyl-tRNA synthetase, class Ia; Methionyl-tRNA synthetase, class Ia, beta subunit, C-terminal; HAMAP: Methionyl-tRNA synthetase; KEGG: sml:Smlt3498 methionyl-tRNA synthetase YP_004793504.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IB, PSPase-like, bacterial; HAD-superfamily hydrolase, subfamily IB, PSPase-like; KEGG: sml:Smlt3499 hypothetical protein YP_004793505.1 KEGG: sml:Smlt3500 ferredoxin; TIGRFAM: Electron transport complex, RnfB; PFAM: Fe-S cluster; 4Fe-4S ferredoxin, iron-sulphur binding, subgroup YP_004793506.1 PFAM: Endoribonuclease L-PSP; KEGG: smt:Smal_2929 endoribonuclease L-PSP YP_004793507.1 KEGG: sml:Smlt3502 transmembrane low pH inducible protein YP_004793508.1 PFAM: Bacterial virulence; KEGG: sml:Smlt3503 acid virulence protein B YP_004793509.1 KEGG: sml:Smlt3504 transmembrane protein YP_004793510.1 KEGG: smt:Smal_2934 hypothetical protein YP_004793511.1 PFAM: Tetratricopeptide TPR2; Transglutaminase-like; Tetratricopeptide TPR-1; KEGG: smt:Smal_2935 tetratricopeptide repeat-containing protein YP_004793512.1 KEGG: smt:Smal_2936 alkylphosphonate utilization operon protein PhnA; TIGRFAM: PhnA protein; PFAM: PhnA protein, C-terminal; PhnA protein, N-terminal YP_004793513.1 KEGG: sml:Smlt3509 heat shock chaperone protein YP_004793514.1 KEGG: sml:Smlt3510 hypothetical protein YP_004793515.1 KEGG: sml:Smlt3511 hypothetical protein YP_004793516.1 KEGG: sml:Smlt3512 hypothetical protein YP_004793517.1 KEGG: sml:Smlt3513 hypothetical protein YP_004793518.1 KEGG: smt:Smal_2942 ECF subfamily RNA polymerase sigma-24 subunit; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2 YP_004793519.1 KEGG: smt:Smal_2943 hypothetical protein YP_004793520.1 PFAM: Mechanosensitive ion channel MscS; KEGG: smt:Smal_2944 hypothetical protein YP_004793521.1 KEGG: sml:Smlt3517 hypothetical protein YP_004793522.1 PFAM: Protein of unknown function DUF2058; KEGG: smt:Smal_2948 hypothetical protein YP_004793523.1 PFAM: Protein of unknown function DUF45; KEGG: smt:Smal_2949 hypothetical protein YP_004793524.1 KEGG: sml:Smlt3520 RNA-binding protein; PFAM: RNA-binding S4; SMART: RNA-binding S4 YP_004793525.1 KEGG: smt:Smal_2951 phospholipase D/transphosphatidylase; PFAM: Phospholipase D/Transphosphatidylase; SMART: Phospholipase D/Transphosphatidylase YP_004793526.1 PFAM: Metal-dependent hydrolase HDOD; KEGG: smt:Smal_2952 signal transduction protein YP_004793527.1 PFAM: Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation region; Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal; KEGG: smt:Smal_2953 Glu/Leu/Phe/Val dehydrogenase dimerisation region; SMART: Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal YP_004793528.1 KEGG: smt:Smal_2954 autotransporter-associated beta strand repeat-containing protein; TIGRFAM: Autotransporter-associated beta strand repeat; Outer membrane autotransporter barrel; PFAM: Peptidase S8/S53, subtilisin/kexin/sedolisin; Autotransporter beta-domain YP_004793529.1 KEGG: sml:Smlt3525 thiolase; TIGRFAM: Thiolase YP_004793530.1 KEGG: sml:Smlt3526 outer membrane lipoprotein YP_004793531.1 KEGG: smt:Smal_2957 hypothetical protein YP_004793532.1 PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central region; KEGG: smt:Smal_2958 acyl-CoA dehydrogenase domain-containing protein YP_004793533.1 KEGG: smt:Smal_2959 mRNA 3'-end processing factor YP_004793534.1 PFAM: ATP dependent DNA ligase, central; DNA ligase, N-terminal; ATP dependent DNA ligase, C-terminal; KEGG: smt:Smal_2960 ATP-dependent DNA ligase YP_004793535.1 KEGG: sml:Smlt3531 ATP-dependent DNA helicase; PFAM: DEAD/H associated; DNA/RNA helicase, DEAD/DEAH box type, N-terminal; DNA/RNA helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal YP_004793536.1 KEGG: sml:Smlt3532 phosphoesterase YP_004793537.1 KEGG: sml:Smlt3533 hypothetical protein YP_004793538.1 PFAM: Monooxygenase, FAD-binding; KEGG: sml:Smlt3534 flavin-binding oxidoreductase YP_004793539.1 KEGG: smt:Smal_2965 cold-shock DNA-binding domain-containing protein; PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein YP_004793540.1 KEGG: sml:Smlt3536 5'-methylthioadenosine phosphorylase; PFAM: Nucleoside phosphorylase YP_004793541.1 PFAM: Phosphoribosyltransferase; KEGG: sml:Smlt3537 hypoxanthine-guanine phosphoribosyltransferase YP_004793542.1 KEGG: smt:Smal_2968 beta-hexosaminidase; HAMAP: Beta-hexosaminidase; PFAM: Glycoside hydrolase, family 3, N-terminal YP_004793543.1 PFAM: DSBA oxidoreductase; KEGG: smt:Smal_2969 DsbA oxidoreductase YP_004793544.1 PFAM: Adenylate cyclase; KEGG: smt:Smal_2970 adenylate cyclase YP_004793545.1 TIGRFAM: 23S rRNA methyltransferase/RumA; HAMAP: 23S rRNA (uracil-5-)-methyltransferase rumA; KEGG: smt:Smal_2971 23S rRNA 5-methyluridine methyltransferase; PFAM: (Uracil-5)-methyltransferase YP_004793546.1 KEGG: smt:Smal_2972 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver region; Signal transduction histidine kinase, phosphotransfer (Hpt) region; SMART: Signal transduction response regulator, receiver region YP_004793547.1 TIGRFAM: Recombination protein O, RecO; HAMAP: DNA repair protein recO; KEGG: sml:Smlt3547 DNA repair protein RecO; PFAM: Recombination protein O, RecO YP_004793548.1 TIGRFAM: GTP-binding protein Era; Small GTP-binding protein; HAMAP: GTP-binding protein Era; KEGG: sml:Smlt3548 GTP-binding protein Era; PFAM: GTP-binding protein, HSR1-related; K Homology, type 2 YP_004793549.1 KEGG: smt:Smal_2975 ribonuclease III; PFAM: Ribonuclease III; Double-stranded RNA binding; TIGRFAM: Ribonuclease III, bacterial; HAMAP: Ribonuclease III, bacterial; SMART: Ribonuclease III; Double-stranded RNA binding YP_004793550.1 KEGG: smt:Smal_2976 hypothetical protein YP_004793551.1 TIGRFAM: Peptidase S26A, signal peptidase I; KEGG: sml:Smlt3551 signal peptidase I; PFAM: Peptidase S24/S26A/S26B, conserved region YP_004793552.1 TIGRFAM: GTP-binding protein LepA; Small GTP-binding protein; HAMAP: GTP-binding protein lepA; KEGG: sml:Smlt3552 GTP-binding protein LepA; PFAM: GTP-binding protein LepA, C-terminal; Protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, domain 2; Translation elongation factor EFG/EF2, C-terminal YP_004793553.1 SMART: PDZ/DHR/GLGF; TIGRFAM: Peptidase S1C, Do; KEGG: sml:Smlt3553 subfamily S1C unassigned peptidase; PFAM: Peptidase S1/S6, chymotrypsin/Hap; PDZ/DHR/GLGF YP_004793554.1 PFAM: Anti sigma-E protein RseA, N-terminal; KEGG: smt:Smal_2980 anti sigma-E protein, RseA YP_004793555.1 KEGG: sml:Smlt3555 RNA polymerase sigma factor RpoE; TIGRFAM: RNA polymerase sigma-70 RpoE type; RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2 YP_004793556.1 KEGG: sml:Smlt3556 enoyl-CoA hydratasee; PFAM: 3-hydroxyacyl-CoA dehydrogenase, NAD binding; Crotonase, core; 3-hydroxyacyl-CoA dehydrogenase, C-terminal YP_004793557.1 PFAM: Pirin, N-terminal; Pirin, C-terminal; KEGG: sml:Smlt3558 pirin-like protein YP_004793558.1 TIGRFAM: Aquaporin; HAMAP: Aquaporin Z; KEGG: smt:Smal_2984 MIP family channel protein; PFAM: Major intrinsic protein YP_004793559.1 KEGG: sml:Smlt3560 hypothetical protein YP_004793560.1 PFAM: Pirin, N-terminal; Pirin, C-terminal; KEGG: sml:Smlt3561 pirin-like protein YP_004793561.1 PFAM: Carbon starvation protein CstA; KEGG: sml:Smlt3562 carbon starvation protein A YP_004793562.1 PFAM: Protein of unknown function DUF466; KEGG: sml:Smlt3563 hypothetical protein YP_004793563.1 PFAM: Protein of unknown function DUF819; KEGG: sml:Smlt3565 transmembrane protein YP_004793564.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: smt:Smal_2990 glyoxalase/bleomycin resistance protein/dioxygenase YP_004793565.1 KEGG: sml:Smlt3567 two-component system sensor histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; HAMP linker domain; SMART: Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; ATP-binding region, ATPase-like YP_004793566.1 KEGG: sml:Smlt3568 two-component system response regulator transcriptional regulator; PFAM: Signal transduction response regulator, receiver region; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver region YP_004793567.1 PFAM: Glycosyl transferase, family 39; KEGG: sml:Smlt3569 transmembrane protein YP_004793568.1 KEGG: sml:Smlt3570 PAP family transmembrane protein; manually curated; PFAM: Phosphatidic acid phosphatase type 2/haloperoxidase YP_004793569.1 PFAM: Sulfatase; Protein of unknown function DUF1705; KEGG: smt:Smal_2995 sulfatase YP_004793570.1 KEGG: sml:Smlt3574 angiotensin-converting peptidyl dipeptidase protein; PFAM: Peptidase M2, peptidyl-dipeptidase A YP_004793571.1 KEGG: sml:Smlt3576 hypothetical protein YP_004793572.1 PFAM: FAD-binding 9, siderophore-interacting; Siderophore-interacting protein; KEGG: sml:Smlt3577 siderophore interacting FAD binding protein YP_004793573.1 KEGG: smt:Smal_2999 drug resistance transporter, Bcr/CflA subfamily; TIGRFAM: Drug resistance transporter Bcr/CflA subfamily; PFAM: Major facilitator superfamily MFS-1 YP_004793574.1 TIGRFAM: Glycine cleavage system P-protein; HAMAP: Glycine cleavage system P-protein; KEGG: sml:Smlt3579 glycine dehydrogenase; PFAM: Glycine cleavage system P-protein, N-terminal YP_004793575.1 PFAM: 3-demethylubiquinone-9 3-O-methyltransferase; KEGG: smt:Smal_3001 3-demethylubiquinone-9 3-methyltransferase YP_004793576.1 PFAM: Amino acid permease-associated region; KEGG: sml:Smlt3581 transmembrane aromatic amino acid transport protein YP_004793577.1 KEGG: smt:Smal_3003 AraC family transcriptional regulator; PFAM: PAS fold-4; Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; PAS YP_004793578.1 KEGG: smt:Smal_3004 hypothetical protein YP_004793579.1 KEGG: smt:Smal_3005 BioH protein YP_004793580.1 KEGG: smt:Smal_3006 hypothetical protein YP_004793581.1 KEGG: smt:Smal_3007 methyl-accepting chemotaxis sensory transducer; PFAM: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain; SMART: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain YP_004793582.1 PFAM: YkuD domain; Peptidoglycan binding-like; KEGG: sml:Smlt3589 peptidoglycan-binding ErfK/YbiS/YcfS/YnhG protein YP_004793583.1 PFAM: Peptidase M23; KEGG: smt:Smal_3011 peptidase M23 YP_004793584.1 KEGG: sml:Smlt3591 transmembrane protein YP_004793585.1 KEGG: smt:Smal_3013 adenylosuccinate synthetase; PFAM: Adenylosuccinate synthetase; TIGRFAM: Adenylosuccinate synthetase; HAMAP: Adenylosuccinate synthetase; SMART: Adenylosuccinate synthetase YP_004793586.1 PFAM: Protein of unknown function DUF2065; KEGG: smt:Smal_3014 hypothetical protein YP_004793587.1 TIGRFAM: HflC; PFAM: Band 7 protein; KEGG: smt:Smal_3015 HflC protein; SMART: Band 7 protein YP_004793588.1 TIGRFAM: HflK; PFAM: Band 7 protein; KEGG: sml:Smlt3596 HflK protein; SMART: Band 7 protein YP_004793589.1 KEGG: sml:Smlt3597 dehydrogenase; TIGRFAM: Quinone oxidoreductase , YhdH/YhfP; PFAM: Alcohol dehydrogenase, zinc-binding; Alcohol dehydrogenase GroES-like YP_004793590.1 KEGG: smt:Smal_3018 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region YP_004793591.1 KEGG: smt:Smal_3019 heat shock protein DnaJ domain-containing protein; PFAM: Heat shock protein DnaJ, N-terminal; Chaperone DnaJ, C-terminal; SMART: Heat shock protein DnaJ, N-terminal YP_004793592.1 PFAM: Redoxin; KEGG: sml:Smlt3600 redoxin YP_004793593.1 PFAM: Ferritin/Dps protein; KEGG: smt:Smal_3021 ferritin Dps family protein YP_004793594.1 TIGRFAM: Penicillin-binding protein 1C; KEGG: smt:Smal_3022 penicillin-binding protein 1C; PFAM: Glycosyl transferase, family 51; Penicillin-binding protein, transpeptidase; Penicillin-binding, C-terminal YP_004793595.1 PFAM: Alpha-2-macroglobulin, N-terminal; Alpha-2-macroglobulin, N-terminal 2; KEGG: sml:Smlt3603 endopeptidase inhibitor YP_004793596.1 TIGRFAM: 2-methylcitrate dehydratase PrpD; KEGG: sml:Smlt3604 2-methylcitrate dehydratase; PFAM: MmgE/PrpD YP_004793597.1 KEGG: smt:Smal_3025 AcnD-accessory protein PrpF; TIGRFAM: PrpF, AcnD-accessory; PFAM: PrpF protein YP_004793598.1 KEGG: sml:Smlt3606 plasmid stabilisation system protein; manually curated; PFAM: Plasmid stabilisation system YP_004793599.1 KEGG: sml:Smlt3607 hypothetical protein; TIGRFAM: addiction module antidote protein, CC2985; PFAM: CopG-like DNA-binding YP_004793600.1 TIGRFAM: 2-methylisocitrate dehydratase AcnD, Fe/S-dependent; KEGG: smt:Smal_3028 aconitate hydratase; PFAM: Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha; Aconitase A/isopropylmalate dehydratase small subunit, swivel YP_004793601.1 TIGRFAM: 2-methylcitrate synthase/citrate synthase type I; KEGG: sml:Smlt3609 methylcitrate synthase; PFAM: Citrate synthase-like YP_004793602.1 TIGRFAM: Methylisocitrate lyase; KEGG: sml:Smlt3610 2-methylisocitrate lyase; PFAM: Isocitrate lyase/phosphorylmutase YP_004793603.1 TIGRFAM: Signal transduction response regulator, propionate catabolism, transcriptional regulator PrpR; PFAM: RNA polymerase sigma factor 54, interaction; Signal transduction response regulator, propionate catabolism activator, N-terminal; KEGG: smt:Smal_3031 sigma54 specific transcriptional regulator; SMART: ATPase, AAA+ type, core YP_004793604.1 KEGG: sml:Smlt3614 hypothetical protein YP_004793605.1 PFAM: Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain; Pyridoxine 5'-phosphate oxidase, dimerisation, C-terminal; TIGRFAM: Pyridoxamine 5'-phosphate oxidase; HAMAP: Pyridoxamine 5'-phosphate oxidase; KEGG: smt:Smal_3033 pyridoxamine 5'-phosphate oxidase YP_004793606.1 KEGG: sml:Smlt3617 hypothetical protein YP_004793607.1 PFAM: Dodecin flavoprotein; KEGG: sml:Smlt3618 hypothetical protein YP_004793608.1 HAMAP: Shikimate kinase; KEGG: smt:Smal_3036 shikimate kinase; PFAM: Shikimate kinase YP_004793609.1 PFAM: 3-dehydroquinate synthase AroB; TIGRFAM: 3-dehydroquinate synthase AroB, subgroup; HAMAP: 3-dehydroquinate synthase; KEGG: sml:Smlt3620 3-dehydroquinate synthase YP_004793610.1 KEGG: sml:Smlt3621 hypothetical protein YP_004793611.1 PFAM: Uroporphyrinogen decarboxylase (URO-D); TIGRFAM: Uroporphyrinogen decarboxylase HemE; HAMAP: Uroporphyrinogen decarboxylase HemE; KEGG: sml:Smlt3622 uroporphyrinogen decarboxylase YP_004793612.1 KEGG: sml:Smlt3623 major facilitator superfamily transporter protein; TIGRFAM: Drug resistance transporter EmrB/QacA subfamily; PFAM: Major facilitator superfamily MFS-1 YP_004793613.1 KEGG: smt:Smal_3041 histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; Two component regulator three Y; Two component regulator propeller; Signal transduction response regulator, receiver region; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; Signal transduction response regulator, receiver region YP_004793614.1 KEGG: smt:Smal_3042 integral membrane sensor hybrid histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; Two component regulator three Y; Two component regulator propeller; Signal transduction response regulator, receiver region; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; Signal transduction response regulator, receiver region YP_004793615.1 PFAM: Lipid/polyisoprenoid-binding, YceI-like; KEGG: smt:Smal_3043 YceI family protein YP_004793616.1 KEGG: smt:Smal_3044 cytochrome b561 YP_004793617.1 PFAM: Lipid/polyisoprenoid-binding, YceI-like; KEGG: smt:Smal_3045 YceI family protein YP_004793618.1 PFAM: Glutaredoxin 2; KEGG: smt:Smal_3046 glutaredoxin 2 YP_004793619.1 TIGRFAM: Iron-sulphur-dependent L-serine dehydratase single chain form; KEGG: smt:Smal_3047 L-serine dehydratase 1; PFAM: Serine dehydratase alpha chain; Serine dehydratase beta chain YP_004793620.1 PFAM: Alpha/beta hydrolase fold-1; KEGG: sml:Smlt3632 hydrolase YP_004793621.1 KEGG: smt:Smal_3049 homoserine dehydrogenase; PFAM: Homoserine dehydrogenase, catalytic; Aspartate/homoserine dehydrogenase, NAD-binding YP_004793622.1 KEGG: smt:Smal_3050 cystathionine gamma-synthase; TIGRFAM: O-succinylhomoserine (thiol)-lyase; PFAM: Cys/Met metabolism, pyridoxal phosphate-dependent enzyme YP_004793623.1 KEGG: sml:Smlt3635 homoserine O-acetyltransferase; PFAM: Alpha/beta hydrolase fold-1 YP_004793624.1 PFAM: Peptidase M23; KEGG: smt:Smal_3052 peptidase M23 YP_004793625.1 TIGRFAM: Peptide chain release factor 3; Small GTP-binding protein; HAMAP: Peptide chain release factor 3; KEGG: sml:Smlt3637 peptide chain release factor 3; PFAM: Protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, domain 2 YP_004793626.1 KEGG: sml:Smlt3638 transmembrane hemolysin protein; TIGRFAM: HylII; PFAM: Hly-III related YP_004793627.1 PFAM: AsmA; KEGG: sml:Smlt3639 outer membrane protein assembly protein YP_004793628.1 KEGG: smt:Smal_3056 signal transduction protein; PFAM: Cystathionine beta-synthase, core; SMART: Cystathionine beta-synthase, core YP_004793629.1 PFAM: Glycosyl transferase, family 2; KEGG: sml:Smlt3641 transmembrane glycosyl transferase YP_004793630.1 TIGRFAM: Monofunctional biosynthetic peptidoglycan transglycosylase; HAMAP: Monofunctional biosynthetic peptidoglycan transglycosylase; KEGG: sml:Smlt3642 monofunctional biosynthetic peptidoglycan transglycosylase; PFAM: Glycosyl transferase, family 51 YP_004793631.1 PFAM: Heat shock protein Hsp33 protein; KEGG: sml:Smlt3643 heat shock chaperonin YP_004793632.1 KEGG: smt:Smal_3060 hypothetical protein YP_004793633.1 PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: smt:Smal_0819 TonB-dependent receptor plug YP_004793634.1 PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: sml:Smlt3646 TetR family transcriptional regulator YP_004793635.1 PFAM: Alpha/beta hydrolase fold-1; KEGG: sml:Smlt3647 peroxidase BpoA YP_004793636.1 PFAM: Protein of unknown function DUF1974; Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, type 1; KEGG: sml:Smlt3648 acyl-CoA dehydrogenase YP_004793637.1 KEGG: sml:Smlt3649 hypothetical protein YP_004793638.1 KEGG: ote:Oter_3032 hypothetical protein YP_004793639.1 PFAM: Protein of unknown function DUF1304; KEGG: smt:Smal_3066 hypothetical protein YP_004793641.1 KEGG: smt:Smal_3067 hypothetical protein YP_004793642.1 PFAM: Beta-lactamase-related; KEGG: sml:Smlt3652 beta-lactamase protein YP_004793643.1 KEGG: sml:Smlt3653 short chain dehydrogenase; PFAM: Short-chain dehydrogenase/reductase SDR YP_004793644.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: smt:Smal_3070 LysR family transcriptional regulator YP_004793645.1 KEGG: sml:Smlt3655 histone protein YP_004793646.1 KEGG: sml:Smlt3657 glycine cleavage system protein H; TIGRFAM: Glycine cleavage H-protein, subgroup; PFAM: Glycine cleavage H-protein YP_004793647.1 PFAM: Glycine cleavage T-protein, N-terminal; Glycine cleavage T-protein, C-terminal barrel; TIGRFAM: Glycine cleavage system T protein; HAMAP: Aminomethyltransferase; KEGG: smt:Smal_3073 glycine cleavage system aminomethyltransferase T YP_004793648.1 PFAM: Protein of unknown function DUF2253, membrane; KEGG: smt:Smal_3076 hypothetical protein YP_004793649.1 KEGG: smt:Smal_3077 hypothetical protein; HAMAP: Uncharacterised protein family UPF0060; PFAM: Uncharacterised protein family UPF0060 YP_004793650.1 KEGG: smt:Smal_3078 nucleoside triphosphate pyrophosphohydrolase; TIGRFAM: NTP pyrophosphohydrolase MazG, bacterial; PFAM: NTP pyrophosphohydrolase MazG, catalytic core YP_004793651.1 TIGRFAM: 3(2),5 -bisphosphate nucleotidase, bacterial; KEGG: smt:Smal_3079 3'(2'),5'-bisphosphate nucleotidase; PFAM: Inositol monophosphatase YP_004793652.1 PFAM: NUDIX hydrolase domain; KEGG: smt:Smal_3080 ADP-ribose diphosphatase NudE YP_004793653.1 TIGRFAM: Adenosylmethionine--8-amino-7-oxononanoate aminotransferase; KEGG: sml:Smlt3666 adenosylmethionine--8-amino-7-oxononanoate transaminase; PFAM: Aminotransferase class-III YP_004793654.1 KEGG: smt:Smal_3082 16S ribosomal RNA methyltransferase RsmE; TIGRFAM: Ribosomal RNA small subunit methyltransferase E; PFAM: Ribosomal RNA small subunit methyltransferase E YP_004793655.1 KEGG: sml:Smlt3668 chemotaxis CheW protein; PFAM: CheW-like protein; SMART: CheW-like protein YP_004793656.1 KEGG: smt:Smal_3084 hypothetical protein YP_004793657.1 KEGG: smt:Smal_3085 CheA signal transduction histidine kinase; PFAM: Signal transduction response regulator, receiver region; CheW-like protein; ATP-binding region, ATPase-like; Signal transduction histidine kinase, phosphotransfer (Hpt) region; Signal transduction histidine kinase, subgroup, homodimeric; SMART: Signal transduction response regulator, receiver region; CheW-like protein; ATP-binding region, ATPase-like; Signal transduction histidine kinase, phosphotransfer (Hpt) region YP_004793658.1 KEGG: sml:Smlt3671 pilus biogenesis protein PilJ/methyl accepting chemotaxis protein; PFAM: Chemotaxis methyl-accepting receptor, signalling; SMART: Chemotaxis methyl-accepting receptor, signalling YP_004793659.1 KEGG: sml:Smlt3672 pilus biogenesis protein; PFAM: CheW-like protein; SMART: CheW-like protein YP_004793660.1 KEGG: sml:Smlt3673 two-component response regulator transcriptional regulator; PFAM: Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region YP_004793661.1 manually curated; PFAM: Signal transduction response regulator, receiver region; KEGG: smt:Smal_3089 response regulator receiver protein; SMART: Signal transduction response regulator, receiver region YP_004793662.1 PFAM: Prokaryotic glutathione synthetase, ATP-binding; Prokaryotic glutathione synthetase, N-terminal; TIGRFAM: Glutathione synthetase, prokaryotic; HAMAP: Glutathione synthetase, prokaryotic; KEGG: sml:Smlt3675 glutathione synthetase YP_004793663.1 KEGG: sml:Smlt3676 TonB-like domain-containing protein; TIGRFAM: TonB, C-terminal; PFAM: Gram-negative bacterial tonB protein YP_004793664.1 KEGG: sml:Smlt3677 glycoprotease protein; TIGRFAM: universal protein YeaZ; PFAM: Peptidase M22, glycoprotease YP_004793665.1 SMART: Helicase, ATP-dependent, c2 type; KEGG: sml:Smlt3678 ATP-dependent DNA helicase-like protein YP_004793666.1 KEGG: bps:BPSS2148a transposase; manually curated; PFAM: Transposase IS3/IS911 YP_004793667.1 KEGG: smt:Smal_3094 hypothetical protein YP_004793668.1 TIGRFAM: Penicillin-binding protein 1B; KEGG: smt:Smal_3095 penicillin-binding protein 1B; PFAM: Glycosyl transferase, family 51; Penicillin-binding protein, transpeptidase YP_004793669.1 PFAM: Glycosyl transferase, family 2; KEGG: xop:PXO_01594 glycosyltransferase YP_004793670.1 KEGG: smt:Smal_3098 hypothetical protein YP_004793671.1 PFAM: RelA/SpoT; TGS; manually curated; KEGG: smt:Smal_3099 RelA/SpoT family protein; TIGRFAM: RelA/SpoT protein YP_004793672.1 KEGG: sml:Smlt3686 hypothetical protein YP_004793673.1 TIGRFAM: RNA helicase, ATP-dependent DEAH box, HrpA type; PFAM: Helicase-associated region; DNA/RNA helicase, C-terminal; Domain of unknown function DUF1605; KEGG: sml:Smlt3687 ATP-dependent RNA helicase HrpA; SMART: DEAD-like helicase, N-terminal; ATPase, AAA+ type, core; DNA/RNA helicase, C-terminal YP_004793674.1 PFAM: Ferritin/Dps protein; KEGG: sml:Smlt3688 ferritin DPS family DNA binding protein YP_004793675.1 TIGRFAM: DNA helicase, ATP-dependent, RecQ type, bacterial; DNA helicase, ATP-dependent, RecQ type, N-terminal; PFAM: RQC domain; DNA/RNA helicase, DEAD/DEAH box type, N-terminal; DNA/RNA helicase, C-terminal; Helicase/RNase D C-terminal, HRDC domain; KEGG: sml:Smlt3689 ATP-dependent DNA helicase; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal; Helicase/RNase D C-terminal, HRDC domain YP_004793676.1 KEGG: smt:Smal_3104 hypothetical protein YP_004793677.1 KEGG: smt:Smal_3105 copper-resistance protein, CopA family; TIGRFAM: Copper-resistance protein CopA; Twin-arginine translocation pathway, signal sequence; PFAM: Multicopper oxidase, type 3; Multicopper oxidase, type 1; Multicopper oxidase, type 2 YP_004793678.1 PFAM: Copper resistance B precursor; KEGG: smt:Smal_3106 copper resistance B precursor YP_004793679.1 PFAM: GCN5-related N-acetyltransferase; KEGG: sml:Smlt3693 acetyltransferase YP_004793680.1 KEGG: smt:Smal_3108 hypothetical protein YP_004793681.1 PFAM: Abortive infection protein; KEGG: smt:Smal_3109 abortive infection protein YP_004793682.1 KEGG: smt:Smal_3110 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region YP_004793683.1 PFAM: esterase; KEGG: sml:Smlt3696 exported esterase YP_004793684.1 PFAM: esterase; KEGG: smt:Smal_3112 esterase YP_004793685.1 KEGG: mfa:Mfla_2706 bacteriophage lysis protein YP_004793686.1 PFAM: Glycoside hydrolase, family 24; KEGG: pna:Pnap_3296 prophage LambdaSo, lysozyme YP_004793687.1 KEGG: dac:Daci_2641 hypothetical protein YP_004793689.1 KEGG: xfn:XfasM23_1191 hypothetical protein YP_004793690.1 KEGG: xfn:XfasM23_1192 phage repressor YP_004793691.1 KEGG: smt:Smal_2520 hypothetical protein YP_004793692.1 KEGG: smt:Smal_3114 hypothetical protein YP_004793693.1 KEGG: smt:Smal_3115 ExsB protein; TIGRFAM: Exoenzyme S synthesis protein B/queuosine synthesis; PFAM: Queuosine synthesis-like YP_004793694.1 PFAM: Radical SAM; KEGG: smt:Smal_3116 radical SAM domain-containing protein YP_004793695.1 KEGG: sml:Smlt3702 TPR repeat exported protein; TIGRFAM: Tol-Pal system, YbgF; PFAM: Tetratricopeptide TPR2 YP_004793696.1 KEGG: smt:Smal_3118 peptidoglycan-associated lipoprotein; TIGRFAM: Peptidoglycan-associated lipoprotein; PFAM: Outer membrane protein, OmpA/MotB, C-terminal YP_004793697.1 TIGRFAM: Tol-Pal system beta propeller repeat-containing protein, TolB; HAMAP: Tol-Pal system beta propeller repeat-containing protein, TolB; KEGG: sml:Smlt3704 translocation protein TolB; PFAM: TolB, N-terminal; WD40-like Beta Propeller YP_004793698.1 KEGG: sml:Smlt3705 TolA transmembrane protein; TIGRFAM: Tol-Pal system, TolA; PFAM: Tol-Pal system, TolA YP_004793699.1 KEGG: sml:Smlt3706 TolR-like protein; TIGRFAM: Biopolymer transport, TolR; PFAM: Biopolymer transport protein ExbD/TolR YP_004793700.1 KEGG: smt:Smal_3122 protein TolQ; TIGRFAM: Tol-Pal system, TolQ; PFAM: MotA/TolQ/ExbB proton channel YP_004793701.1 KEGG: sml:Smlt3708 thioesterase protein; TIGRFAM: Tol-Pal system-associated acyl-CoA thioesterase; 4-hydroxybenzoyl-CoA thioesterase; PFAM: Thioesterase superfamily YP_004793702.1 SMART: ATPase, AAA+ type, core; TIGRFAM: DNA helicase, Holliday junction RuvB type; KEGG: sml:Smlt3709 Holliday junction DNA helicase RuvB; HAMAP: DNA helicase, Holliday junction RuvB type; PFAM: DNA helicase, Holliday junction RuvB type, C-terminal; ATPase, AAA-type, core; DNA helicase, Holliday junction RuvB type, N-terminal YP_004793703.1 KEGG: smt:Smal_3125 K potassium transporter; HAMAP: Low affinity potassium transport system protein kup; PFAM: K+ potassium transporter YP_004793704.1 TIGRFAM: Bacterial DNA recombination protein RuvA; HAMAP: Holliday junction ATP-dependent DNA helicase ruvA; KEGG: sml:Smlt3711 Holliday junction DNA helicase RuvA; PFAM: DNA helicase, Holliday junction RuvA type, domain I, bacterial; DNA helicase, Holliday junction RuvA type, domain III, C-terminal YP_004793705.1 PFAM: Crossover junction endodeoxyribonuclease RuvC; TIGRFAM: Crossover junction endodeoxyribonuclease RuvC; HAMAP: Crossover junction endodeoxyribonuclease RuvC; KEGG: smt:Smal_3127 Holliday junction resolvase YP_004793706.1 TIGRFAM: Protein of unknown function DUF28; HAMAP: Protein of unknown function DUF28; KEGG: sml:Smlt3713 hypothetical protein; PFAM: Protein of unknown function DUF28 YP_004793707.1 PFAM: Alpha/beta hydrolase fold-1; KEGG: sml:Smlt3715 hypothetical protein YP_004793708.1 PFAM: GCN5-related N-acetyltransferase; KEGG: sml:Smlt3716 acetyltransferase-GNAT family YP_004793709.1 KEGG: smt:Smal_3131 hypothetical protein YP_004793710.1 TIGRFAM: Aspartyl-tRNA synthetase, class IIb, bacterial/mitochondrial type; KEGG: sml:Smlt3718 aspartyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class II (D/K/N); Nucleic acid binding, OB-fold, tRNA/helicase-type; GAD domain YP_004793711.1 KEGG: sml:Smlt3719 hypothetical protein YP_004793712.1 KEGG: smt:Smal_3134 hypothetical protein YP_004793713.1 PFAM: Cation/H+ exchanger; KEGG: smt:Smal_3135 sodium/hydrogen exchanger YP_004793714.1 KEGG: sml:Smlt3722 beta-lactamase; PFAM: Beta-lactamase-related YP_004793715.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: sml:Smlt3723 HTH and LysR family transcriptional regulator YP_004793716.1 KEGG: smt:Smal_3138 ABC transporter-like protein; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core YP_004793717.1 PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: smt:Smal_3139 TonB-dependent receptor YP_004793718.1 PFAM: Cation/H+ exchanger; Regulator of K+ conductance, N-terminal; KEGG: sml:Smlt3726 transmembrane transport protein YP_004793719.1 TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; KEGG: sml:Smlt3728 O-acetylhomoserine (thiol)-lyase; PFAM: Cys/Met metabolism, pyridoxal phosphate-dependent enzyme YP_004793720.1 KEGG: smt:Smal_3142 winged helix family two component transcriptional regulator; PFAM: Signal transduction response regulator, receiver region; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver region YP_004793721.1 KEGG: sml:Smlt3730 transmembrane two component system sensor histidine kinase protein; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; HAMP linker domain; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; HAMP linker domain YP_004793722.1 PFAM: MltA-interacting MipA; KEGG: sml:Smlt3731 MltA scaffolding protein YP_004793723.1 TIGRFAM: Chaperonin ClpB; PFAM: ATPase associated with various cellular activities, AAA-2; Clp, N-terminal; ATPase, AAA-type, core; Clp ATPase, C-terminal; KEGG: smt:Smal_3145 ATP-dependent chaperone ClpB; SMART: ATPase, AAA+ type, core YP_004793724.1 KEGG: sml:Smlt3733 transmembrane protein YP_004793725.1 KEGG: sml:Smlt3734 glutathione S-transferase YP_004793726.1 PFAM: Sulphate transporter; KEGG: sml:Smlt3735 transmembrane protein YP_004793727.1 KEGG: sml:Smlt3737 pyruvate dehydrogenase; PFAM: Thiamine pyrophosphate enzyme, C-terminal TPP-binding; Thiamine pyrophosphate enzyme, central region; Thiamine pyrophosphate enzyme, N-terminal TPP binding region YP_004793728.1 KEGG: sml:Smlt3738 hypothetical protein YP_004793729.1 KEGG: smt:Smal_3151 hypothetical protein YP_004793730.1 PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: sml:Smlt3740 TonB dependent receptor protein YP_004793731.1 TIGRFAM: Trehalose-phosphatase; HAD-superfamily hydrolase, subfamily IIB; KEGG: sml:Smlt3741 trehalose-phosphatase; PFAM: Trehalose-phosphatase YP_004793732.1 PFAM: Glycoside hydrolase 15-related; KEGG: sml:Smlt3742 glycoside hydrolase YP_004793733.1 TIGRFAM: Alpha,alpha-trehalose-phosphate synthase; KEGG: smt:Smal_3155 alpha,alpha-trehalose-phosphate synthase; PFAM: Glycosyl transferase, family 20 YP_004793734.1 PFAM: thiol-disulphide oxidoreductase DCC; KEGG: sml:Smlt3744 transmembrane protein YP_004793735.1 KEGG: smt:Smal_3157 hypothetical protein YP_004793736.1 KEGG: smt:Smal_3158 hypothetical protein; TIGRFAM: Multi-copper polyphenol oxidoreductase, laccase; PFAM: Multi-copper polyphenol oxidoreductase, laccase YP_004793737.1 KEGG: sml:Smlt3747 ribosomal large subunit pseudouridine synthase D; TIGRFAM: Pseudouridine synthase, RluC/RluD; PFAM: Pseudouridine synthase, RsuA and RluB/C/D/E/F; RNA-binding S4 YP_004793738.1 TIGRFAM: Outer membrane assembly lipoprotein YfiO; KEGG: smt:Smal_3160 outer membrane assembly lipoprotein YfiO YP_004793739.1 PFAM: Lipase, secreted; KEGG: sml:Smlt3749 exported lipase YP_004793740.1 KEGG: smt:Smal_3162 NAD synthetase; TIGRFAM: NAD+ synthase; PFAM: NAD+ synthase; Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_004793741.1 SMART: CoA-binding; TIGRFAM: Succinyl-CoA ligase, alpha subunit; KEGG: sml:Smlt3752 succinyl-CoA synthetase subunit alpha; PFAM: ATP-citrate lyase/succinyl-CoA ligase; CoA-binding YP_004793742.1 PFAM: ATP-grasp fold, succinyl-CoA synthetase-type; ATP-citrate lyase/succinyl-CoA ligase; TIGRFAM: Succinyl-CoA synthetase, beta subunit; HAMAP: Succinyl-CoA ligase [ADP-forming] subunit beta; KEGG: smt:Smal_3164 succinyl-CoA synthetase subunit beta YP_004793743.1 KEGG: sml:Smlt3754 transmembrane two component sensor histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region YP_004793744.1 KEGG: sml:Smlt3755 transcriptional regulator; PFAM: RNA polymerase sigma factor 54, interaction; Signal transduction response regulator, receiver region; Helix-turn-helix, Fis-type; SMART: Signal transduction response regulator, receiver region; ATPase, AAA+ type, core YP_004793745.1 KEGG: sml:Smlt3756 type IV pilus assembly protein; TIGRFAM: ATPase, type IV, pilus assembly, PilB; PFAM: Type II secretion system protein E; General secretory system II, protein E, N-terminal YP_004793746.1 KEGG: sml:Smlt3757 prepilin peptidase dependent protein D; manually curated; PFAM: Fimbrial protein pilin; Prepilin-type cleavage/methylation, N-terminal YP_004793747.1 PFAM: Fimbrial protein pilin; Prepilin-type cleavage/methylation, N-terminal; KEGG: xac:XAC3241 fimbrillin YP_004793748.1 PFAM: Type II secretion system F domain; KEGG: smt:Smal_3177 type II secretion system protein YP_004793749.1 KEGG: smt:Smal_3178 prepilin peptidase; PFAM: Peptidase A24A, N-terminal; Peptidase A24A, prepilin type IV YP_004793750.1 TIGRFAM: Dephospho-CoA kinase; HAMAP: Dephospho-CoA kinase; KEGG: smt:Smal_3179 dephospho-CoA kinase YP_004793752.1 KEGG: smt:Smal_2251 YD repeat-containing protein; TIGRFAM: RHS repeat-associated core domain-containing protein; YD repeat; PFAM: YD repeat YP_004793753.1 KEGG: sml:Smlt3763 hypothetical protein YP_004793754.1 KEGG: sml:Smlt3765 two-component system transmembrane sensor histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; HAMP linker domain; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; HAMP linker domain YP_004793755.1 KEGG: smt:Smal_3181 winged helix family two component transcriptional regulator; PFAM: Signal transduction response regulator, receiver region; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver region YP_004793756.1 KEGG: sml:Smlt3768 hypothetical protein YP_004793757.1 KEGG: sml:Smlt3768 hypothetical protein YP_004793758.1 KEGG: sml:Smlt3768 hypothetical protein YP_004793759.1 TIGRFAM: S6 modification enzyme RimK; HAMAP: Ribosomal protein S6 modification protein; KEGG: sml:Smlt3769 ribosomal protein S6 modification protein; PFAM: ATP-grasp fold, RimK-type YP_004793761.1 PFAM: Protein of unknown function DUF805; KEGG: smt:Smal_3187 hypothetical protein YP_004793762.1 TIGRFAM: Outer membrane autotransporter barrel; KEGG: sml:Smlt3773 outer membrane esterase; PFAM: Autotransporter beta-domain; Lipase, GDSL YP_004793763.1 KEGG: smt:Smal_3189 sulfur carrier protein ThiS; TIGRFAM: ThiS, thiamine-biosynthesis; PFAM: ThiamineS YP_004793764.1 KEGG: sml:Smlt3775 thiazole biosynthesis protein; HAMAP: Thiazole biosynthesis; PFAM: Thiazole biosynthesis YP_004793765.1 KEGG: smt:Smal_3191 tRNA (guanine-N(7)-)-methyltransferase; TIGRFAM: tRNA (guanine-N-7) methyltransferase; PFAM: tRNA (guanine-N-7) methyltransferase YP_004793766.1 PFAM: Regulator of K+ conductance, C-terminal; Divalent ion symporter; KEGG: smt:Smal_3192 TrkA-C domain-containing protein YP_004793767.1 PFAM: Rieske [2Fe-2S] iron-sulphur domain; KEGG: smt:Smal_3193 Rieske (2Fe-2S) domain-containing protein YP_004793768.1 KEGG: sml:Smlt3780 transmembrane protein YP_004793769.1 PFAM: Fumarylacetoacetase, C-terminal-like; KEGG: sml:Smlt3781 fumarylpyruvate hydrolase YP_004793770.1 TIGRFAM: Large-conductance mechanosensitive channel; HAMAP: Large-conductance mechanosensitive channel; KEGG: sml:Smlt3782 large-conductance mechanosensitive channel; PFAM: Large-conductance mechanosensitive channel YP_004793771.1 PFAM: Peptidase M28; KEGG: sml:Smlt3783 aminopeptidase YP_004793772.1 KEGG: smt:Smal_3198 amino acid carrier protein; TIGRFAM: Sodium:alanine symporter; PFAM: Sodium:alanine symporter YP_004793773.1 KEGG: smt:Smal_3199 hypothetical protein YP_004793774.1 KEGG: smt:Smal_3200 TrmH family RNA methyltransferase; TIGRFAM: RNA methyltransferase TrmH, group 3; PFAM: tRNA/rRNA methyltransferase, SpoU; RNA 2-O ribose methyltransferase, substrate binding YP_004793775.1 KEGG: sml:Smlt3785 transmembrane symporter; TIGRFAM: Sodium:alanine symporter; PFAM: Sodium:alanine symporter YP_004793776.1 PFAM: GCN5-related N-acetyltransferase; KEGG: sml:Smlt3786 acetyltransferase YP_004793777.1 PFAM: Acriflavin resistance protein; KEGG: smt:Smal_3203 acriflavin resistance protein YP_004793778.1 KEGG: smt:Smal_3204 RND family efflux transporter MFP subunit; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD YP_004793779.1 KEGG: smt:Smal_3205 TonB-dependent copper receptor; TIGRFAM: TonB-dependent copper receptor; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug YP_004793780.1 KEGG: smt:Smal_3206 hypothetical protein YP_004793781.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: sml:Smlt3793 transcriptional regulator CysB-like protein YP_004793782.1 TIGRFAM: Cysteine synthase A; Cysteine synthase K/M; KEGG: smt:Smal_3210 cysteine synthase A; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit YP_004793783.1 KEGG: smt:Smal_3211 hypothetical protein; PFAM: Appr-1-p processing; SMART: Appr-1-p processing YP_004793784.1 KEGG: sml:Smlt3796 hypothetical protein YP_004793785.1 PFAM: Fructose-bisphosphate aldolase, class-I; KEGG: sml:Smlt3797 fructose-bisphosphate aldolase, cytoplasmic isozyme 1 YP_004793786.1 TIGRFAM: Pyruvate kinase; KEGG: smt:Smal_3214 pyruvate kinase; PFAM: Pyruvate kinase, barrel; Pyruvate kinase, alpha/beta YP_004793787.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; KEGG: smt:Smal_3215 HAD-superfamily hydrolase; PFAM: Haloacid dehalogenase-like hydrolase YP_004793788.1 HAMAP: Phosphoglycerate kinase; KEGG: sml:Smlt3800 phosphoglycerate kinase; PFAM: Phosphoglycerate kinase YP_004793789.1 KEGG: sml:Smlt3802 transmembrane protein YP_004793790.1 PFAM: Protein of unknown function DUF2339, transmembrane; KEGG: smt:Smal_3218 hypothetical protein YP_004793791.1 TIGRFAM: Glyceraldehyde-3-phosphate dehydrogenase, type I; KEGG: sml:Smlt3804 glyceraldehyde 3-phosphate dehydrogenase; PFAM: Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain; Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain YP_004793792.1 PFAM: Outer membrane protein, OmpW; KEGG: sml:Smlt3805 outer membrane Omp family protein YP_004793793.1 PFAM: S1/P1 nuclease; KEGG: sml:Smlt3806 endonuclease P1 YP_004793794.1 KEGG: sml:Smlt3807 metallo-beta-lactamase superfamily protein YP_004793795.1 KEGG: smt:Smal_3223 hypothetical protein YP_004793796.1 KEGG: smt:Smal_3224 TonB family protein; TIGRFAM: TonB, C-terminal; PFAM: Peptidase M56, BlaR1; Gram-negative bacterial tonB protein YP_004793797.1 PFAM: Penicillinase repressor; KEGG: smt:Smal_3225 CopY family transcriptional repressor YP_004793798.1 PFAM: Flavin reductase-like, FMN-binding; KEGG: smt:Smal_3226 flavin reductase domain-containing protein YP_004793799.1 KEGG: sml:Smlt3812 hypothetical protein YP_004793800.1 TIGRFAM: Addiction module antidote protein, HigA; KEGG: pen:PSEEN5390 hypothetical protein YP_004793801.1 PFAM: Plasmid maintenance system killer; KEGG: pst:PSPTO_0423 proteic killer protein YP_004793802.1 TIGRFAM: Transketolase, bacterial-like; KEGG: sml:Smlt3813 transketolase; PFAM: Transketolase, N-terminal; Transketolase-like, pyrimidine-binding domain; Transketolase, C-terminal YP_004793803.1 PFAM: Sodium:dicarboxylate symporter; KEGG: sml:Smlt3814 transmembrane sodium-dicarboxylate family transporter protein YP_004793804.1 KEGG: smt:Smal_3230 hypothetical protein YP_004793805.1 KEGG: smt:Smal_3231 TPR repeat-containing protein; PFAM: Tetratricopeptide TPR-1; von Willebrand factor, type A; SMART: von Willebrand factor, type A; Tetratricopeptide repeat YP_004793806.1 KEGG: smt:Smal_3232 von Willebrand factor type A; PFAM: von Willebrand factor, type A; SMART: von Willebrand factor, type A YP_004793807.1 PFAM: Protein of unknown function DUF916, cell surface KEGG: smt:Smal_3233 hypothetical protein YP_004793808.1 PFAM: Protein of unknown function DUF58; KEGG: smt:Smal_3234 hypothetical protein YP_004793809.1 KEGG: sml:Smlt3820 methanol dehydrogenase regulatory protein; PFAM: ATPase associated with various cellular activities, AAA-3; SMART: ATPase, AAA+ type, core YP_004793810.1 KEGG: smt:Smal_3236 type IV pilus secretin PilQ; TIGRFAM: Type IV pilus secretin PilQ; PFAM: Type II/III secretion system; Secretin/TonB, short N-terminal; NolW-like YP_004793811.1 PFAM: Pilus assembly protein PilP; KEGG: sml:Smlt3822 type 4 fimbrial biogenesis protein PilP YP_004793812.1 PFAM: Pilus assembly protein, PilO; KEGG: smt:Smal_3238 pilus assembly protein PilO YP_004793813.1 PFAM: Fimbrial assembly; KEGG: smt:Smal_3239 fimbrial assembly family protein YP_004793814.1 TIGRFAM: Type IV pilus assembly protein PilM; KEGG: sml:Smlt3825 type 4 fimbrial biogenesis protein PilM YP_004793815.1 TIGRFAM: Penicillin-binding protein 1A; KEGG: sml:Smlt3826 penicillin-binding protein; PFAM: Glycosyl transferase, family 51; Penicillin-binding protein, transpeptidase YP_004793816.1 KEGG: smt:Smal_3242 hypothetical protein YP_004793817.1 KEGG: sml:Smlt3828 transmembrane protein YP_004793818.1 PFAM: YadA-like, C-terminal; Haemagluttinin motif; Hep/Hag; KEGG: smt:Smal_3245 hemagluttinin domain-containing protein YP_004793819.1 KEGG: smt:Smal_3246 fimbrial protein YP_004793820.1 PFAM: CblD like pilus biogenesis initiator; KEGG: smt:Smal_3247 CblD family pilus biogenesis initiator protein YP_004793821.1 KEGG: smt:Smal_3248 outermembrane fimbrial usher protein YP_004793822.1 PFAM: Fimbrial major subunit, CS1-type; KEGG: smt:Smal_3249 CS1 type fimbrial major subunit YP_004793823.1 PFAM: Protein of unknown function DUF388, OB-fold; KEGG: kvu:EIO_2292 hypothetical protein YP_004793824.1 KEGG: sml:Smlt3834 transmembrane protein YP_004793825.1 TIGRFAM: Citrate synthase, type II; KEGG: sml:Smlt3835 type II citrate synthase; PFAM: Citrate synthase-like YP_004793826.1 TIGRFAM: Ribosomal protein L31; HAMAP: 50S ribosomal protein L31 type B; KEGG: smt:Smal_3254 50S ribosomal protein L31 type B; PFAM: Ribosomal protein L31 YP_004793827.1 PFAM: Inosine/uridine-preferring nucleoside hydrolase; KEGG: sml:Smlt3837 nucleoside hydrolase YP_004793828.1 TIGRFAM: DNA helicase, ATP-dependent, RecG; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Nucleic acid binding, OB-fold, tRNA/helicase-type; DNA/RNA helicase, C-terminal; KEGG: smt:Smal_3256 ATP-dependent DNA helicase RecG; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal YP_004793829.1 KEGG: sml:Smlt3839 endoribonuclease protein; TIGRFAM: YjgF-like protein; PFAM: Endoribonuclease L-PSP YP_004793830.1 SMART: Metal-dependent phosphohydrolase, HD region; TIGRFAM: RelA/SpoT protein; KEGG: sml:Smlt3840 guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase; PFAM: RelA/SpoT; Metal-dependent phosphohydrolase, HD region, subdomain; TGS; Amino acid-binding ACT YP_004793831.1 TIGRFAM: DNA-directed RNA polymerase, omega subunit; HAMAP: DNA-directed RNA polymerase, omega subunit; KEGG: smt:Smal_3259 DNA-directed RNA polymerase subunit omega; PFAM: RNA polymerase Rpb6 YP_004793832.1 KEGG: sml:Smlt3842 guanylate kinase; PFAM: Guanylate kinase; TIGRFAM: Guanylate kinase, sub-group; HAMAP: Guanylate kinase, sub-group; SMART: Guanylate kinase/L-type calcium channel region YP_004793833.1 PFAM: Molybdopterin oxidoreductase Fe4S4 region; Molybdopterin oxidoreductase; KEGG: sml:Smlt3843a formate dehydrogenase-o, major subunit YP_004793834.1 TIGRFAM: Formate dehydrogenase, alpha subunit, anaerobic; KEGG: smt:Smal_3261 formate dehydrogenase subunit alpha; PFAM: Molybdopterin oxidoreductase; Molydopterin dinucleotide-binding region YP_004793835.1 KEGG: sml:Smlt3845 formate dehydrogenase, iron-sulfur subunit; TIGRFAM: Formate dehydrogenase, beta subunit; PFAM: Formate dehydrogenase, transmembrane; 4Fe-4S ferredoxin, iron-sulphur binding, subgroup YP_004793836.1 TIGRFAM: Formate dehydrogenase, gamma subunit; KEGG: smt:Smal_3263 formate dehydrogenase subunit gamma YP_004793837.1 TIGRFAM: Formate dehydrogenase accessory protein; HAMAP: Formate dehydrogenase accessory protein; KEGG: sml:Smlt3848 formate dehydrogenase protein FdhE; PFAM: Formate dehydrogenase accessory protein YP_004793838.1 PFAM: Pyridoxal phosphate-dependent transferase; TIGRFAM: L-seryl-tRNA selenium transferase; HAMAP: L-seryl-tRNA(Sec) selenium transferase; KEGG: smt:Smal_3265 L-seryl-tRNA(sec) selenium transferase YP_004793839.1 KEGG: sml:Smlt3850 selenocysteine-specific elongation factor; TIGRFAM: Translation elongation factor, selenocysteine-specific; PFAM: Protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, domain 2; Translation elongation factor SelB, winged helix, type 2; Translation elongation factor SelB, winged helix, type 3 YP_004793840.1 TIGRFAM: Selenide water dikinase; HAMAP: Selenide, water dikinase; KEGG: sml:Smlt3851 selenide, water dikinase; PFAM: AIR synthase related protein; AIR synthase related protein, C-terminal YP_004793841.1 KEGG: sml:Smlt3852 helix-turn-helix DNA binding protein; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3 YP_004793842.1 KEGG: sml:Smlt3854 hypothetical protein; TIGRFAM: Conserved hypothetical protein CHP00255; PFAM: YicC-like, N-terminal; Domain of unknown function DUF1732 YP_004793843.1 PFAM: Exoribonuclease, phosphorolytic domain 1; Exoribonuclease, phosphorolytic domain 2; TIGRFAM: Ribonuclease phosphorolytic, bacterial-type; HAMAP: Ribonuclease phosphorolytic, bacterial-type; KEGG: smt:Smal_3270 ribonuclease PH YP_004793844.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: smt:Smal_3271 glyoxalase/bleomycin resistance protein/dioxygenase YP_004793845.1 PFAM: Ham1-like protein; TIGRFAM: Ham1-like protein; HAMAP: Nucleoside-triphosphatase rdgB; KEGG: smt:Smal_3272 deoxyribonucleotide triphosphate pyrophosphatase YP_004793846.1 TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; PFAM: HemN, C-terminal; Radical SAM; KEGG: smt:Smal_3273 coproporphyrinogen III oxidase; SMART: Elongator protein 3/MiaB/NifB YP_004793847.1 PFAM: Protein of unknown function DUF1631; KEGG: sml:Smlt3859 hypothetical protein YP_004793848.1 PFAM: Type IV pilus assembly PilZ; KEGG: smt:Smal_3275 type IV pilus assembly PilZ YP_004793849.1 HAMAP: Xaa-Pro dipeptidase; KEGG: sml:Smlt3861 proline dipeptidase; PFAM: Peptidase M24, structural domain YP_004793850.1 PFAM: Peptidase M24B, X-Pro dipeptidase/aminopeptidase P N-terminal; Peptidase M24, structural domain; KEGG: sml:Smlt3863 aminopeptidase P YP_004793851.1 TIGRFAM: YgfB/YecA protein; KEGG: sml:Smlt3864 hypothetical protein YP_004793852.1 TIGRFAM: Conserved hypothetical protein CHP02449; KEGG: smt:Smal_3279 hypothetical protein YP_004793853.1 PFAM: Cell division protein ZapA-like; KEGG: sml:Smlt3865 cell division ZapA family protein YP_004793854.1 KEGG: sml:Smlt3866 5-formyltetrahydrofolate cyclo-ligase; TIGRFAM: 5-formyltetrahydrofolate cyclo-ligase; PFAM: 5-formyltetrahydrofolate cyclo-ligase YP_004793855.1 PFAM: Uncharacterised protein family UPF0310; KEGG: smt:Smal_3282 hypothetical protein YP_004793856.1 PFAM: Ribose 5-phosphate isomerase; HTH transcriptional regulator, DeoR; TIGRFAM: Ribose 5-phosphate isomerase; HAMAP: Ribose-5-phosphate isomerase, subgroup; KEGG: smt:Smal_3283 ribose-5-phosphate isomerase A YP_004793857.1 PFAM: Protein of unknown function DUF192; KEGG: smt:Smal_3284 hypothetical protein YP_004793858.1 KEGG: sml:Smlt3870 hypothetical protein YP_004793859.1 PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: smt:Smal_3286 rubredoxin-type Fe(Cys)4 protein YP_004793860.1 TIGRFAM: Thiamine monophosphate synthase; HAMAP: Thiamine-phosphate pyrophosphorylase; KEGG: smt:Smal_3287 thiamine-phosphate pyrophosphorylase; PFAM: Thiamine monophosphate synthase YP_004793861.1 PFAM: Aminotransferase class-III; TIGRFAM: Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase; HAMAP: Glutamate-1-semialdehyde 2,1-aminomutase; KEGG: sml:Smlt3873 glutamate-1-semialdehyde aminotransferase YP_004793862.1 KEGG: smt:Smal_3289 azurin; TIGRFAM: Azurin, proteobacteria; PFAM: Blue (type 1) copper domain YP_004793863.1 KEGG: sml:Smlt3875 haloacid dehalogenase hydrolase protein; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase-like hydrolase YP_004793864.1 TIGRFAM: Acetylornithine/succinylornithine aminotransferase; KEGG: smt:Smal_3291 acetylornithine transaminase protein; PFAM: Aminotransferase class-III YP_004793865.1 PFAM: Ion transport; KEGG: smt:Smal_3292 ion transport protein YP_004793866.1 KEGG: smt:Smal_3293 hypothetical protein YP_004793867.1 KEGG: smt:Smal_3294 hypothetical protein YP_004793868.1 PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: sml:Smlt3879 short chain dehydrogenase YP_004793869.1 KEGG: smt:Smal_3296 hypothetical protein YP_004793872.1 KEGG: smt:Smal_3297 hypothetical protein YP_004793873.1 KEGG: sml:Smlt3882 serine/threonine protein kinase YP_004793874.1 PFAM: Phosphatidic acid phosphatase type 2/haloperoxidase; SNARE associated Golgi protein; KEGG: smt:Smal_3299 PA-phosphatase-like phosphoesterase YP_004793875.1 KEGG: sml:Smlt3884 hypothetical protein; PFAM: Peptidase S16, lon N-terminal; SMART: Peptidase S16, lon N-terminal YP_004793876.1 TIGRFAM: UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso- diaminopimelate ligase; KEGG: smt:Smal_3301 UDP-N-acetylmuramate; PFAM: Mur ligase, central; Mur ligase, N-terminal; Mur ligase, C-terminal YP_004793877.1 TIGRFAM: Adenylate kinase, subfamily; HAMAP: Adenylate kinase; KEGG: sml:Smlt3886 adenylate kinase; PFAM: Adenylate kinase YP_004793878.1 PFAM: Phosphofructokinase; KEGG: sml:Smlt3887 6-phosphofructokinase YP_004793879.1 KEGG: smt:Smal_3305 hypothetical protein YP_004793880.1 KEGG: sml:Smlt3889 hypothetical protein YP_004793881.1 PFAM: Inorganic H+ pyrophosphatase; TIGRFAM: Inorganic H+ pyrophosphatase; HAMAP: Pyrophosphate-energized proton pump; KEGG: smt:Smal_3307 membrane-bound proton-translocating pyrophosphatase YP_004793883.1 KEGG: sml:Smlt3892 TonB dependent receptor protein; TIGRFAM: TonB, C-terminal; PFAM: Gram-negative bacterial tonB protein YP_004793884.1 KEGG: smt:Smal_3309 TonB system transport protein ExbD; TIGRFAM: TonB system transport protein ExbD type-1; PFAM: Biopolymer transport protein ExbD/TolR YP_004793885.1 KEGG: sml:Smlt3894 MotA/TolQ/ExbB proton channel family protein; TIGRFAM: TonB-system energizer ExbB type-1; PFAM: MotA/TolQ/ExbB proton channel YP_004793886.1 PFAM: Protein of unknown function DUF454; KEGG: sml:Smlt3895 transmembrane protein YP_004793887.1 PFAM: Haem oxygenase-like; KEGG: smt:Smal_3312 heme oxygenase-like protein YP_004793888.1 KEGG: smt:Smal_3313 hypothetical protein YP_004793889.1 PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; Secretin/TonB, short N-terminal; KEGG: sml:Smlt3898 extracellular heme-binding protein YP_004793890.1 PFAM: FecR protein; KEGG: sml:Smlt3899 transmembrane FecR sensor protein YP_004793891.1 KEGG: sml:Smlt3900 RNA polymerase ECF sigma factor; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2 YP_004793892.1 KEGG: sur:STAUR_0255 hypothetical protein YP_004793893.1 KEGG: sml:Smlt3900A hypothetical protein YP_004793894.1 HAMAP: Inorganic pyrophosphatase; KEGG: sml:Smlt3902 inorganic pyrophosphatase; PFAM: Inorganic pyrophosphatase YP_004793895.1 PFAM: Metal-dependent hydrolase HDOD; Signal transduction response regulator, receiver region; KEGG: sml:Smlt3903 two component response regulator transcriptional regulator YP_004793896.1 KEGG: smt:Smal_3320 hypothetical protein YP_004793897.1 PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: xac:XAC3444 TonB-dependent receptor YP_004793898.1 KEGG: smt:Smal_3322 AraC family transcriptional regulator; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain YP_004793899.1 PFAM: Signal transduction response regulator, C-terminal; WD40-like Beta Propeller; KEGG: sml:Smlt3907 transcriptional regulator YP_004793900.1 PFAM: Ion transport 2; KEGG: smt:Smal_3324 ion transport 2 domain-containing protein YP_004793901.1 TIGRFAM: Thiamine biosynthesis protein ThiC; HAMAP: Thiamine biosynthesis protein ThiC; KEGG: sml:Smlt3909 thiamine biosynthesis protein ThiC; PFAM: Thiamine biosynthesis protein ThiC YP_004793902.1 KEGG: sml:Smlt3910 glycine betaine transporter 2; TIGRFAM: BCCT transporter; PFAM: BCCT transporter YP_004793903.1 TIGRFAM: Gamma-glutamyltranspeptidase; KEGG: smt:Smal_3327 gamma-glutamyltransferase; PFAM: Gamma-glutamyltranspeptidase YP_004793904.1 PFAM: Acetohydroxy acid isomeroreductase, catalytic; Acetohydroxy acid isomeroreductase C-terminal; TIGRFAM: Acetohydroxy acid isomeroreductase; HAMAP: Ketol-acid reductoisomerase; KEGG: smt:Smal_3328 ketol-acid reductoisomerase YP_004793905.1 TIGRFAM: Acetolactate synthase, large subunit, biosynthetic; KEGG: sml:Smlt3914 acetolactate synthase 2 catalytic subunit; PFAM: Thiamine pyrophosphate enzyme, N-terminal TPP binding region; Thiamine pyrophosphate enzyme, central region; Thiamine pyrophosphate enzyme, C-terminal TPP-binding YP_004793906.1 KEGG: sml:Smlt3915 acetolactate synthase isozyme II small subunit YP_004793908.1 PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit; KEGG: smt:Smal_3331 threonine dehydratase YP_004793909.1 TIGRFAM: Bacterial 2-isopropylmalate synthase; KEGG: sml:Smlt3917 2-isopropylmalate synthase; PFAM: Pyruvate carboxyltransferase; 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain YP_004793910.1 PFAM: Methyltransferase type 11; KEGG: sml:Smlt3918 trans-aconitate methyltransferase YP_004793911.1 TIGRFAM: 3-isopropylmalate dehydratase, large subunit region; HAMAP: 3-isopropylmalate dehydratase, large subunit region; KEGG: sml:Smlt3919 3-isopropylmalate dehydratase large subunit LeuC; PFAM: Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha YP_004793912.1 KEGG: sml:Smlt3920 3-isopropylmalate dehydratase small subunit; TIGRFAM: 3-isopropylmalate dehydratase, small subunit region; PFAM: Aconitase A/isopropylmalate dehydratase small subunit, swivel YP_004793913.1 PFAM: Isocitrate/isopropylmalate dehydrogenase; TIGRFAM: Isopropylmalate dehydrogenase; HAMAP: Isopropylmalate dehydrogenase; KEGG: smt:Smal_3336 3-isopropylmalate dehydrogenase YP_004793914.1 PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: sml:Smlt3922 short-chain dehydrogenase YP_004793915.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: sml:Smlt3923 LysR family transcriptional regulator YP_004793916.1 PFAM: Acriflavin resistance protein; KEGG: sml:Smlt3924 drug-resistance cell envelope-like protein YP_004793917.1 KEGG: sml:Smlt3925 RND/Acr family transmembrane transporter; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD YP_004793918.1 PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: smt:Smal_3341 TetR family transcriptional regulator YP_004793919.1 KEGG: smt:Smal_3342 protein-L-isoaspartate(D-aspartate) O-methyltransferase; PFAM: Protein-L-isoaspartate(D-aspartate) O-methyltransferase YP_004793920.1 KEGG: sml:Smlt3928 outer membrane protein; TIGRFAM: Type I secretion outer membrane protein, TolC; PFAM: Outer membrane efflux protein YP_004793921.1 KEGG: smt:Smal_3344 hypothetical protein YP_004793922.1 PFAM: Three-deoxy-D-manno-octulosonic-acid transferase, N-terminal; KEGG: smt:Smal_3345 3-deoxy-D-manno-octulosonic-acid transferase YP_004793923.1 KEGG: sml:Smlt3931 lipid A biosynthesis lauroyl acyltransferase; TIGRFAM: Lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase; PFAM: Bacterial lipid A biosynthesis acyltransferase YP_004793924.1 KEGG: smt:Smal_3976 hypothetical protein YP_004793925.1 PFAM: O-antigen ligase-related; KEGG: sml:Smlt3932 transmembrane O-antigen polymerase protein YP_004793926.1 PFAM: Glycosyl transferase, group 1; KEGG: sml:Smlt3933 glycosyltransferase YP_004793927.1 KEGG: sml:Smlt3934 hypothetical protein YP_004793928.1 KEGG: sml:Smlt3935 glycosyltransferase; TIGRFAM: Alpha-1,2-mannosidase, PFAM: Glycosyl hydrolase 92 YP_004793929.1 PFAM: Uncharacterised protein family, basic secretory protein; KEGG: sml:Smlt3936 hypothetical protein YP_004793930.1 PFAM: Malic enzyme, NAD-binding; Malic enzyme, N-terminal; Phosphate acetyl/butaryl transferase; KEGG: sml:Smlt3940 malic enzyme YP_004793931.1 KEGG: sml:Smlt3942 aerobic C4-dicarboxylate transport protein; HAMAP: C4-dicarboxylate transport protein; PFAM: Sodium:dicarboxylate symporter YP_004793932.1 PFAM: Phosphate-selective porin O/P; KEGG: sml:Smlt3943 porin P YP_004793933.1 KEGG: smt:Smal_3355 PAS/PAC sensor hybrid histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; PAS fold-4; Signal transduction response regulator, receiver region; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; Signal transduction response regulator, receiver region YP_004793934.1 KEGG: smt:Smal_3356 two component LuxR family transcriptional regulator; PFAM: Signal transduction response regulator, receiver region; Transcription regulator LuxR, C-terminal; SMART: Transcription regulator LuxR, C-terminal; Signal transduction response regulator, receiver region YP_004793935.1 PFAM: Bacterial extracellular solute-binding, family 1; KEGG: sml:Smlt3947 ABC transporter periplasmic solute-binding protein YP_004793936.1 KEGG: smt:Smal_3358 integral membrane sensor signal transduction histidine kinase; PFAM: Two-component sensor kinase N-terminal; HAMP linker domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; ATP-binding region, ATPase-like; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region YP_004793937.1 KEGG: sml:Smlt3949 two-component response regulator; PFAM: Signal transduction response regulator, receiver region; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver region YP_004793938.1 PFAM: Phosphate-selective porin O/P; KEGG: smt:Smal_3360 phosphate-selective porin O and P YP_004793939.1 KEGG: sml:Smlt3951 citrate transporter; TIGRFAM: Citrate transporter; PFAM: Divalent ion symporter YP_004793940.1 TIGRFAM: Acetoacetyl-CoA reductase; KEGG: sml:Smlt3952 3-ketoacyl-ACP reductase; PFAM: Short-chain dehydrogenase/reductase SDR YP_004793941.1 PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: sml:Smlt3954 TonB dependent receptor protein YP_004793942.1 KEGG: sml:Smlt3955 hypothetical protein; TIGRFAM: Conserved hypothetical protein QEGLA; PFAM: Protein of unknown function DUF1704 YP_004793943.1 TIGRFAM: GTPase EngC; HAMAP: ribosome biogenesis GTPase RsgA; KEGG: sml:Smlt3956 ribosome-associated GTPase; PFAM: GTPase EngC YP_004793944.1 KEGG: smt:Smal_3366 aminotransferase AlaT; PFAM: Aminotransferase, class I/II YP_004793945.1 PFAM: Lipase, GDSL; KEGG: smt:Smal_3367 G-D-S-L family lipolytic protein YP_004793946.1 PFAM: Methyltransferase type 12; KEGG: sml:Smlt3959 hypothetical protein YP_004793947.1 PFAM: Polysaccharide deacetylase; KEGG: sml:Smlt3960 polysaccharide deacetylase YP_004793948.1 TIGRFAM: Glutaredoxin-related protein; PFAM: Glutaredoxin; FeS cluster biogenesis; Rhodanese-like; KEGG: sml:Smlt3961 glutaredoxin; SMART: Rhodanese-like YP_004793949.1 PFAM: Protein of unknown function DUF924, bacterial; KEGG: smt:Smal_3371 hypothetical protein YP_004793950.1 KEGG: smt:Smal_3372 AMP nucleosidase; TIGRFAM: AMP nucleosidase, PFAM: Nucleoside phosphorylase YP_004793951.1 PFAM: Amidohydrolase 1; KEGG: sml:Smlt3964 hypothetical protein YP_004793952.1 PFAM: Amidohydrolase 1; KEGG: smt:Smal_3374 amidohydrolase YP_004793953.1 PFAM: DSBA oxidoreductase; KEGG: sml:Smlt3966 thioredoxin oxidoreductase YP_004793954.1 KEGG: sml:Smlt3967 DegV family transcriptional regulator; TIGRFAM: DegV; PFAM: DegV YP_004793955.1 KEGG: sml:Smlt3968 hypothetical protein YP_004793956.1 manually curated; KEGG: pay:PAU_03321 hypothetical protein YP_004793957.1 KEGG: sml:Smlt3969 outer membrane efflux protein; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT; PFAM: Outer membrane efflux protein YP_004793958.1 PFAM: Secretion protein HlyD; KEGG: smt:Smal_3379 secretion protein HlyD family protein YP_004793959.1 PFAM: Major facilitator superfamily MFS-1; KEGG: sml:Smlt3971 transmembrane transport protein YP_004793960.1 PFAM: HTH transcriptional regulator, LysR; LysR, substrate-binding; KEGG: sml:Smlt3972 LysR family transcriptional regulator YP_004793961.1 PFAM: UspA; KEGG: smt:Smal_3382 UspA domain-containing protein YP_004793962.1 KEGG: sml:Smlt3974 hypothetical protein YP_004793963.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate cyclase, predicted; KEGG: smt:Smal_3384 diguanylate cyclase; SMART: Diguanylate cyclase, predicted YP_004793964.1 TIGRFAM: S-formylglutathione hydrolase; KEGG: sml:Smlt3976 esterase; PFAM: esterase YP_004793965.1 PFAM: Protein of unknown function DUF446; KEGG: sml:Smlt3977 hypothetical protein YP_004793966.1 KEGG: smt:Smal_3387 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase; TIGRFAM: Alcohol dehydrogenase class III/S-(hydroxymethyl)glutathione dehydrogenase; PFAM: Alcohol dehydrogenase, zinc-binding; Alcohol dehydrogenase GroES-like YP_004793967.1 PFAM: Protein of unknown function DUF156; KEGG: smt:Smal_3388 hypothetical protein YP_004793968.1 KEGG: smt:Smal_3389 hypothetical protein YP_004793969.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: sml:Smlt3980 LysR family transcriptional regulator YP_004793970.1 KEGG: smt:Smal_3391 NADH:flavin oxidoreductase/NADH oxidase; PFAM: NADH:flavin oxidoreductase/NADH oxidase, N-terminal YP_004793971.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: smt:Smal_3392 glyoxalase/bleomycin resistance protein/dioxygenase YP_004793972.1 KEGG: sml:Smlt3984 hydrolase YP_004793973.1 PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: smt:Smal_3394 TetR family transcriptional regulator YP_004793974.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: smt:Smal_3395 LysR family transcriptional regulator YP_004793975.1 KEGG: sml:Smlt3987 NADP-dependent alcohol dehydrogenase; PFAM: Alcohol dehydrogenase GroES-like; Alcohol dehydrogenase, zinc-binding YP_004793976.1 TIGRFAM: Glutamate--cysteine ligase, plant; KEGG: sml:Smlt3988 glutamate--cysteine ligase GshA; PFAM: Glutamate--cysteine ligase, GCS2 YP_004793977.1 PFAM: Protein of unknown function DUF125, transmembrane; KEGG: sml:Smlt3989 transmembrane protein YP_004793978.1 SMART: Helix-turn-helix, AraC domain; KEGG: smt:Smal_3400 AraC family transcriptional regulator YP_004793979.1 KEGG: sml:Smlt3991 metallo-beta-lactamase superfamily protein YP_004793980.1 TIGRFAM: GTP-binding protein, ribosome biogenesis, YsxC; HAMAP: GTP-binding protein, ribosome biogenesis, YsxC; KEGG: sml:Smlt3992 ribosome biogenesis GTP-binding protein YsxC; PFAM: GTP-binding protein, HSR1-related YP_004793981.1 PFAM: Cytochrome c, class I; KEGG: sml:Smlt3992A cytochrome c4 YP_004793982.1 PFAM: DSBA oxidoreductase; KEGG: sml:Smlt3993 thiol:disulfide interchange protein YP_004793983.1 PFAM: DSBA oxidoreductase; KEGG: sml:Smlt3994 thiol:disulfide interchange protein YP_004793984.1 PFAM: Endonuclease/exonuclease/phosphatase; KEGG: sml:Smlt3995 endonuclease/exonuclease/phosphatase family protein YP_004793985.1 KEGG: sml:Smlt3996 transmembrane protein; manually curated; PFAM: Protein of unknown function DUF6, transmembrane YP_004793986.1 KEGG: smt:Smal_3408 AsnC family transcriptional regulator; PFAM: Transcription regulator, AsnC-type, C-terminal; SMART: Transcription regulator, AsnC-type YP_004793987.1 PFAM: Peptidase M23; KEGG: sml:Smlt3998 endopeptidase YP_004793988.1 KEGG: sml:Smlt3999 TonB-dependent receptor for Fe(III)-coprogen, Fe(III)-ferrioxamine B and Fe(III)-rhodotrulic acid; TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug YP_004793989.1 KEGG: kko:Kkor_1890 hypothetical protein YP_004793990.1 PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: sml:Smlt4003 TonB dependent receptor protein YP_004793991.1 PFAM: Biopolymer transport protein ExbD/TolR; KEGG: xcv:XCV0012 biopolymer transport ExbD protein YP_004793992.1 PFAM: Biopolymer transport protein ExbD/TolR; KEGG: smt:Smal_3412 biopolymer transport protein ExbD/TolR YP_004793993.1 PFAM: Lytic transglycosylase-like, catalytic; KEGG: smt:Smal_3413 lytic transglycosylase catalytic YP_004793994.1 KEGG: smt:Smal_3414 hypothetical protein YP_004793995.1 HAMAP: Multifunctional CCA protein; KEGG: sml:Smlt4008 multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase; PFAM: Polynucleotide adenylyltransferase region; Metal-dependent phosphohydrolase, HD region, subdomain YP_004793996.1 KEGG: sml:Smlt4009 hypothetical protein YP_004793997.1 KEGG: sml:Smlt4011 hypothetical protein YP_004793998.1 KEGG: sml:Smlt4012 hypothetical protein YP_004793999.1 KEGG: smt:Smal_3417 hypothetical protein YP_004794000.1 PFAM: Peptidase S41; KEGG: sml:Smlt4014 peptidase protein YP_004794001.1 KEGG: sml:Smlt4016 hypothetical protein YP_004794002.1 KEGG: sml:Smlt4018 autotransporter protein; TIGRFAM: Outer membrane autotransporter barrel; PFAM: Autotransporter beta-domain YP_004794003.1 PFAM: Protein of unknown function DUF2261, transmembrane; KEGG: sml:Smlt4019 transmembrane protein YP_004794004.1 TIGRFAM: N-acetylglucosamine-6-phosphate deacetylase; KEGG: smt:Smal_3421 N-acetylglucosamine-6-phosphate deacetylase; PFAM: Amidohydrolase 1 YP_004794005.1 KEGG: sml:Smlt4021 phosphosugar-binding protein; PFAM: Sugar isomerase (SIS) YP_004794006.1 KEGG: smt:Smal_3423 LacI family transcriptional regulator; PFAM: Periplasmic binding protein/LacI transcriptional regulator; HTH transcriptional regulator, LacI; SMART: HTH transcriptional regulator, LacI YP_004794007.1 KEGG: smt:Smal_3424 glucose/galactose transporter; TIGRFAM: Bacterial glucose/galactose transporter; PFAM: Major facilitator superfamily MFS-1 YP_004794008.1 KEGG: sml:Smlt4025 glucokinase; PFAM: Glucokinase YP_004794009.1 KEGG: smt:Smal_3426 TonB-dependent receptor; TIGRFAM: Bacterial TonB-dependent receptor; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug YP_004794010.1 KEGG: smt:Smal_3427 beta-N-acetylhexosaminidase; PFAM: Glycoside hydrolase, family 20, catalytic core YP_004794011.1 PFAM: VanZ like protein; KEGG: smt:Smal_3428 VanZ family protein YP_004794012.1 PFAM: Protein of unknown function DUF185; KEGG: sml:Smlt4029 hypothetical protein YP_004794013.1 KEGG: sml:Smlt4030 pteridine reductase; PFAM: Short-chain dehydrogenase/reductase SDR YP_004794014.1 KEGG: sml:Smlt4031 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; TIGRFAM: 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK; PFAM: 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK YP_004794015.1 PFAM: Proteasome, subunit alpha/beta; KEGG: sml:Smlt4032 hypothetical protein YP_004794016.1 KEGG: smt:Smal_3433 response regulator receiver sensor hybrid histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction response regulator, receiver region; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SMART: ATP-binding region, ATPase-like; Signal transduction response regulator, receiver region; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region YP_004794017.1 KEGG: smt:Smal_3434 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region YP_004794018.1 TIGRFAM: PAS; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; CHASE3; PAS fold-4; KEGG: sml:Smlt4039 two-component sensor histidine kinase protein; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region YP_004794019.1 KEGG: smt:Smal_3436 transport-associated; PFAM: Transport-associated; SMART: Transport-associated and nodulation region, bacteria YP_004794020.1 PFAM: Oxidoreductase, N-terminal; Oxidoreductase, C-terminal; KEGG: bta:790851 hypothetical LOC790851 YP_004794021.1 TIGRFAM: 6-phosphogluconate dehydrogenase related protein; KEGG: smt:Smal_3438 6-phosphogluconate dehydrogenase-like protein; PFAM: 6-phosphogluconate dehydrogenase, NAD-binding; 6-phosphogluconate dehydrogenase, C-terminal YP_004794022.1 KEGG: smt:Smal_3439 hypothetical protein YP_004794023.1 PFAM: Protein of unknown function DUF2242; KEGG: smt:Smal_3440 hypothetical protein YP_004794024.1 SMART: Peptidase S41; PDZ/DHR/GLGF; TIGRFAM: Peptidase S41A, C-terminal protease; KEGG: sml:Smlt4045 exported tail-specific protease; PFAM: Peptidase S41; PDZ/DHR/GLGF YP_004794025.1 KEGG: sml:Smlt4046 lipoyl synthase; PFAM: Radical SAM; TIGRFAM: Lipoate synthase; HAMAP: Lipoate synthase; SMART: Elongator protein 3/MiaB/NifB YP_004794026.1 PFAM: Biotin/lipoate A/B protein ligase; TIGRFAM: Octanoyltransferase; HAMAP: Octanoyltransferase; KEGG: sml:Smlt4047 lipoate-protein ligase B YP_004794027.1 KEGG: sml:Smlt4048 hypothetical protein; HAMAP: Protein of unknown function DUF493; PFAM: Protein of unknown function DUF493 YP_004794028.1 PFAM: Protein of unknown function DUF2219; KEGG: sml:Smlt4049 hypothetical protein YP_004794029.1 KEGG: sml:Smlt4050 penicillin-binding protein; PFAM: Peptidase S11, D-alanyl-D-alanine carboxypeptidase A; Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal YP_004794030.1 KEGG: smt:Smal_3447 rare lipoprotein A; TIGRFAM: Rare lipoprotein A, bacterial; PFAM: Rare lipoprotein A; Sporulation/cell division region, bacteria YP_004794031.1 TIGRFAM: Lytic murein transglycosylase B; KEGG: sml:Smlt4052 murein hydrolase YP_004794032.1 KEGG: sml:Smlt4054 rod shape-determining protein; TIGRFAM: Rod shape-determining protein RodA; PFAM: Cell cycle protein YP_004794033.1 KEGG: smt:Smal_3450 rod shape-determining protein RodA; TIGRFAM: Rod shape-determining protein RodA; PFAM: Cell cycle protein YP_004794034.1 TIGRFAM: Penicillin-binding protein 2; KEGG: sml:Smlt4056 penicillin-binding protein; PFAM: Penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain YP_004794035.1 KEGG: smt:Smal_3452 rod shape-determining protein MreD; TIGRFAM: Cell shape-determining protein MreD; PFAM: Cell shape-determining protein MreD YP_004794036.1 KEGG: smt:Smal_3453 rod shape-determining protein MreC; TIGRFAM: Rod shape-determining protein MreC, subtype; PFAM: Rod shape-determining protein MreC YP_004794037.1 TIGRFAM: Cell shape determining protein MreB/Mrl; PFAM: Cell shape determining protein MreB/Mrl; KEGG: smt:Smal_3454 rod shape-determining protein MreB; SMART: Actin/actin-like YP_004794038.1 KEGG: sml:Smlt4060 sugar kinase; PFAM: Carbohydrate/purine kinase YP_004794039.1 KEGG: sml:Smlt4062 haloacid dehalogenase hydrolase; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase-like hydrolase YP_004794040.1 KEGG: sml:Smlt4063 hypothetical protein YP_004794041.1 KEGG: smt:Smal_3459 peptidase M1 membrane alanine aminopeptidase; PFAM: Peptidase M1, membrane alanine aminopeptidase, N-terminal; Peptidase M1, leukotriene A4 hydrolase, aminopeptidase C-terminal YP_004794042.1 TIGRFAM: UbiE/COQ5 methyltransferase; HAMAP: UbiE/COQ5 methyltransferase; KEGG: sml:Smlt4065 ubiquinone/menaquinone biosynthesis methyltransferase; PFAM: UbiE/COQ5 methyltransferase YP_004794043.1 PFAM: CMP/dCMP deaminase, zinc-binding; KEGG: sml:Smlt4066 deaminase YP_004794044.1 KEGG: sml:Smlt4067 hypothetical protein YP_004794045.1 KEGG: smt:Smal_3463 hypothetical protein YP_004794046.1 KEGG: sml:Smlt4069 transmembrane protein YP_004794047.1 KEGG: smt:Smal_3466 NodT family RND efflux system outer membrane lipoprotein; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT; PFAM: Outer membrane efflux protein YP_004794048.1 KEGG: sml:Smlt4071 acriflavin resistance protein B; TIGRFAM: Hydrophobe/amphiphile efflux-1 HAE1; PFAM: Acriflavin resistance protein YP_004794049.1 KEGG: sml:Smlt4072 acriflavin resistance protein A; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD YP_004794050.1 PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; Transcriptional regulator, MAATS, C-terminal; KEGG: sml:Smlt4073 TetR family regulatory protein YP_004794051.1 PFAM: Oxidoreductase, N-terminal; Oxidoreductase, C-terminal; KEGG: sml:Smlt4074 GFO/IDH/MocA family oxidoreductase YP_004794052.1 SMART: ATPase, AAA+ type, core; TIGRFAM: Heat shock protein HslU; KEGG: sml:Smlt4075 ATP-dependent protease ATP-binding subunit HslU; HAMAP: ATP-dependent hsl protease ATP-binding subunit hslU; PFAM: ATPase associated with various cellular activities, AAA-2 YP_004794053.1 TIGRFAM: ATP-dependent protease HslVU, peptidase subunit; HAMAP: ATP-dependent protease hslV; KEGG: smt:Smal_3472 ATP-dependent protease peptidase subunit; PFAM: Proteasome, subunit alpha/beta YP_004794054.1 KEGG: smt:Smal_3473 hypothetical protein YP_004794055.1 TIGRFAM: Tyrosine recombinase XerC; HAMAP: Tyrosine recombinase xerC; KEGG: sml:Smlt4077 site-specific tyrosine recombinase XerC; PFAM: Integrase, catalytic core, phage; Integrase, N-terminal SAM-like, phage YP_004794056.1 PFAM: Protein of unknown function DUF484; KEGG: sml:Smlt4078 hypothetical protein YP_004794057.1 TIGRFAM: Diaminopimelate epimerase; HAMAP: Diaminopimelate epimerase; KEGG: smt:Smal_3476 diaminopimelate epimerase; PFAM: Diaminopimelate epimerase YP_004794058.1 KEGG: sml:Smlt4080 exported lipoprotein YP_004794059.1 PFAM: Protein of unknown function DUF454; KEGG: sml:Smlt4081 transmembrane protein YP_004794060.1 KEGG: sml:Smlt4082 exported oligopeptidase B; PFAM: Peptidase S9A, oligopeptidase, N-terminal beta-propeller; Peptidase S9, prolyl oligopeptidase, catalytic domain YP_004794061.1 KEGG: sml:Smlt4083 hypothetical protein; PFAM: Aminotransferase, class I/II YP_004794062.1 KEGG: sml:Smlt4084 exported oligopeptidase YP_004794063.1 KEGG: smt:Smal_3482 hypothetical protein YP_004794064.1 PFAM: Lipocalin-like; KEGG: smt:Smal_3483 lipocalin family protein YP_004794065.1 TIGRFAM: Addiction module antidote protein, HigA; PFAM: Helix-turn-helix type 3; KEGG: neu:NE0481 helix-hairpin-helix DNA-binding motif-containing protein; SMART: Helix-turn-helix type 3 YP_004794066.1 PFAM: Plasmid maintenance system killer; KEGG: tkm:TK90_0223 plasmid maintenance system killer YP_004794067.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: sml:Smlt4087 ABC transporter permease YP_004794068.1 PFAM: ABC transporter-like; NIL domain; KEGG: smt:Smal_3485 DL-methionine transporter ATP-binding subunit; SMART: ATPase, AAA+ type, core YP_004794069.1 PFAM: Protein of unknown function DUF6, transmembrane; KEGG: sml:Smlt4089 transmembrane transporter protein YP_004794070.1 KEGG: smt:Smal_3487 nucleotide-binding protein; HAMAP: UPF0234 protein yajQ; PFAM: Protein of unknown function DUF520 YP_004794071.1 PFAM: Protein of unknown function DUF1415; KEGG: smt:Smal_3491 hypothetical protein YP_004794072.1 KEGG: sml:Smlt4092 dehydrogenase/oxidoreductase; PFAM: Short-chain dehydrogenase/reductase SDR YP_004794073.1 KEGG: smt:Smal_3493 oligopeptidase A; PFAM: Peptidase M3A/M3B, thimet/oligopeptidase F YP_004794074.1 KEGG: sml:Smlt4094 hypothetical protein YP_004794075.1 KEGG: sml:Smlt4095 pyridoxal-phosphate dependent lyase; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit YP_004794076.1 TIGRFAM: Glyoxalase I; KEGG: smt:Smal_3496 lactoylglutathione lyase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase YP_004794077.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: smt:Smal_3497 glyoxalase/bleomycin resistance protein/dioxygenase YP_004794078.1 KEGG: sml:Smlt4098 CBS domain-containing protein; PFAM: Cystathionine beta-synthase, core; SMART: Cystathionine beta-synthase, core YP_004794079.1 PFAM: Glutamine amidotransferase, class-II; Sugar isomerase (SIS); TIGRFAM: Glucosamine-fructose-6-phosphate aminotransferase, isomerising; HAMAP: Glucosamine--fructose-6-phosphate aminotransferase [isomerizing]; KEGG: sml:Smlt4099 glucosamine--fructose-6-phosphate aminotransferase YP_004794080.1 KEGG: smt:Smal_3500 RND family efflux transporter MFP subunit; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD YP_004794081.1 PFAM: ABC transporter-like; KEGG: smt:Smal_3501 ABC transporter-like protein; SMART: ATPase, AAA+ type, core YP_004794082.1 PFAM: Protein of unknown function DUF214, permase predicted; KEGG: sml:Smlt4102 ABC transporter permease YP_004794083.1 PFAM: Protein of unknown function DUF214, permase predicted; KEGG: sml:Smlt4103 transmembrane permease YP_004794084.1 KEGG: smt:Smal_3505 two component sigma54 specific fis family transcriptional regulator; PFAM: RNA polymerase sigma factor 54, interaction; Signal transduction response regulator, receiver region; Helix-turn-helix, Fis-type; SMART: Signal transduction response regulator, receiver region; ATPase, AAA+ type, core YP_004794085.1 KEGG: sml:Smlt4106 two component system sensor histidine kinase; PFAM: ATP-binding region, ATPase-like; HAMP linker domain; SMART: ATP-binding region, ATPase-like YP_004794086.1 PFAM: GCN5-related N-acetyltransferase; KEGG: smt:Smal_3507 GCN5-related N-acetyltransferase YP_004794087.1 PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; Bacterial transferase hexapeptide repeat; TIGRFAM: Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase; HAMAP: Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase; KEGG: sml:Smlt4108 UDP-N-acetylglucosamine synthesis bifunctional protein YP_004794088.1 PFAM: GtrA-like protein; KEGG: sml:Smlt4109 transmembrane protein YP_004794089.1 KEGG: msl:Msil_0449 hypothetical protein YP_004794090.1 TIGRFAM: ATPase, F1 complex, delta/epsilon subunit; HAMAP: ATPase, F1 complex, delta/epsilon subunit; KEGG: smt:Smal_3510 F0F1 ATP synthase subunit epsilon; PFAM: ATPase, F1 complex, delta/epsilon subunit, N-terminal YP_004794091.1 SMART: ATPase, AAA+ type, core; TIGRFAM: ATPase, F1 complex, beta subunit; KEGG: sml:Smlt4111 F0F1 ATP synthase subunit beta; HAMAP: ATPase, F1 complex, beta subunit; PFAM: ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain; ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal; ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal YP_004794092.1 KEGG: sml:Smlt4112 F0F1 ATP synthase subunit gamma; TIGRFAM: ATPase, F1 complex, gamma subunit; PFAM: ATPase, F1 complex, gamma subunit YP_004794093.1 TIGRFAM: ATPase, F1 complex, alpha subunit; HAMAP: ATPase, F1 complex, alpha subunit; KEGG: sml:Smlt4113 F0F1 ATP synthase subunit alpha; PFAM: ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain; ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal; ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal YP_004794094.1 TIGRFAM: ATPase, F1 complex, OSCP/delta subunit; HAMAP: ATPase, F1 complex, OSCP/delta subunit; KEGG: sml:Smlt4114 F0F1 ATP synthase subunit delta; PFAM: ATPase, F1 complex, OSCP/delta subunit YP_004794095.1 KEGG: sml:Smlt4115 F0F1 ATP synthase subunit B; TIGRFAM: ATPase, F0 complex, subunit B, bacterial; PFAM: ATPase, F0 complex, subunit B/B', bacterial/chloroplast YP_004794096.1 TIGRFAM: ATPase, F0 complex, subunit C, bacterial/chloroplast; HAMAP: ATPase, F0 complex, subunit C; KEGG: smt:Smal_3516 F0F1 ATP synthase subunit C; PFAM: ATPase, F0/V0 complex, subunit C YP_004794097.1 TIGRFAM: ATPase, F0 complex, subunit A; HAMAP: ATP synthase subunit a; KEGG: sml:Smlt4117 F0F1 ATP synthase subunit A; PFAM: ATPase, F0 complex, subunit A YP_004794098.1 KEGG: smt:Smal_3518 hypothetical protein YP_004794099.1 KEGG: sml:Smlt4119 hypothetical protein YP_004794100.1 KEGG: sml:Smlt4120 dihydrolipoamide dehydrogenase; TIGRFAM: Dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Biotin/lipoyl attachment; Pyridine nucleotide-disulphide oxidoreductase, dimerisation YP_004794101.1 TIGRFAM: Dihydrolipoamide acetyltransferase pyruvate dehydrogenase complex; KEGG: sml:Smlt4121 dihydrolipoamide acetyltransferase; PFAM: 2-oxoacid dehydrogenase acyltransferase, catalytic domain; Biotin/lipoyl attachment; E3 binding YP_004794102.1 KEGG: sml:Smlt4122 hypothetical protein YP_004794103.1 PFAM: Outer membrane protein, OmpW; KEGG: smt:Smal_3523 OmpW family protein YP_004794104.1 PFAM: Transposase, IS116/IS110/IS902; Transposase, IS111A/IS1328/IS1533; KEGG: ppu:PP_5290 ISPpu10, transposase YP_004794105.1 KEGG: sml:Smlt4124 glycerol-3-phosphate dehydrogenase; PFAM: FAD dependent oxidoreductase YP_004794106.1 PFAM: Carbohydrate kinase, FGGY, N-terminal; Carbohydrate kinase, FGGY, C-terminal; TIGRFAM: Glycerol kinase; HAMAP: Glycerol kinase; KEGG: smt:Smal_3525 glycerol kinase YP_004794107.1 KEGG: sml:Smlt4126 exported lipoprotein; TIGRFAM: Lipoprotein YaeC; PFAM: NLPA lipoprotein YP_004794108.1 KEGG: sml:Smlt4127 DeoR family regulatory protein YP_004794109.1 KEGG: smt:Smal_3528 hypothetical protein YP_004794110.1 PFAM: Protein of unknown function DUF481; KEGG: sml:Smlt4128 hypothetical protein YP_004794111.1 TIGRFAM: Tetrapyrrole biosynthesis, hydroxymethylbilane synthase; HAMAP: Porphobilinogen deaminase; KEGG: smt:Smal_3530 porphobilinogen deaminase; PFAM: Tetrapyrrole biosynthesis, hydroxymethylbilane synthase YP_004794112.1 KEGG: smt:Smal_3531 LytTR family two component transcriptional regulator; PFAM: Signal transduction response regulator, receiver region; LytTr DNA-binding region; SMART: Signal transduction response regulator, receiver region YP_004794113.1 PFAM: Signal transduction histidine kinase, internal region; ATP-binding region, ATPase-like; KEGG: smt:Smal_3532 histidine kinase internal region YP_004794114.1 KEGG: sml:Smlt4132 carboxylesterase; PFAM: Phospholipase/carboxylesterase YP_004794115.1 KEGG: sml:Smlt4133 glucosyltransferase MdoH; HAMAP: Glucans biosynthesis glucosyltransferase H; PFAM: Glycosyl transferase, family 2 YP_004794116.1 PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: smt:Smal_3535 TonB-dependent receptor YP_004794118.1 KEGG: smt:Smal_3536 hypothetical protein YP_004794119.1 KEGG: sml:Smlt4138 methyl-accepting chemotaxis protein; PFAM: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain; Cache; SMART: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain YP_004794120.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: smt:Smal_3538 NAD-dependent epimerase/dehydratase YP_004794121.1 KEGG: smt:Smal_3539 peptidase S41; PFAM: Peptidase S41; SMART: Peptidase S41 YP_004794122.1 PFAM: HTH transcriptional regulator, MarR; KEGG: smt:Smal_3540 regulatory protein MarR YP_004794123.1 KEGG: smt:Smal_3541 hypothetical protein YP_004794124.1 PFAM: Stress-induced protein, KGG, repeat; KEGG: smt:Smal_3544 hypothetical protein YP_004794125.1 KEGG: smt:Smal_3545 EmrB/QacA subfamily drug resistance transporter; TIGRFAM: Drug resistance transporter EmrB/QacA subfamily; PFAM: Major facilitator superfamily MFS-1 YP_004794126.1 PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: sml:Smlt4142 TetR family transcriptional regulator YP_004794127.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: smt:Smal_3547 glyoxalase/bleomycin resistance protein/dioxygenase YP_004794128.1 KEGG: smt:Smal_3548 hypothetical protein YP_004794129.1 KEGG: csy:CENSYa_0412 Rossmann fold nucleotide-binding protein YP_004794130.1 KEGG: sml:Smlt4145 extracellular serine protease; TIGRFAM: Outer membrane autotransporter barrel; PFAM: Autotransporter beta-domain; Peptidase S8/S53, subtilisin/kexin/sedolisin YP_004794131.1 PFAM: ABC transporter-like; KEGG: xca:xccb100_3783 ABC transporter ATP-binding protein; SMART: ATPase, AAA+ type, core YP_004794132.1 PFAM: Protein of unknown function DUF214, permase predicted; KEGG: xal:XALc_2897 hypothetical protein YP_004794133.1 PFAM: Protein of unknown function DUF214, permase predicted; KEGG: xal:XALc_2896 ABC transporter permease YP_004794134.1 KEGG: ABC transporter related protein; PFAM: ABC transporter-like; ABC transporter, transmembrane region; SMART: ATPase, AAA+ type, core YP_004794135.1 KEGG: sur:STAUR_7163 protein kinase; PFAM: Lanthionine synthetase C-like; SMART: Serine/threonine-protein kinase domain YP_004794137.1 KEGG: rpx:Rpdx1_3720 winged helix family two component transcriptional regulator; PFAM: Signal transduction response regulator, receiver region; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver region YP_004794138.1 KEGG: smt:Smal_3555 hypothetical protein; TIGRFAM: Conserved hypothetical protein CHP02284; PFAM: Protein of unknown function DUF2383 YP_004794140.1 PFAM: Protein of unknown function DUF6, transmembrane; KEGG: sml:Smlt4153 transmembrane protein YP_004794141.1 KEGG: smt:Smal_3559 AraC family transcriptional regulator; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain YP_004794143.1 PFAM: Glutathione S-transferase, N-terminal; KEGG: smt:Smal_3560 glutathione S-transferase domain-containing protein YP_004794144.1 KEGG: xcv:XCV0100 secreted protein YP_004794145.1 KEGG: smt:Smal_3561 hypothetical protein YP_004794146.1 KEGG: smt:Smal_3562 histone family protein nucleoid-structuring protein H-NS; PFAM: Histone-like nucleoid-structuring protein H-NS; SMART: Histone-like nucleoid-structuring protein H-NS YP_004794147.1 PFAM: DoxX; KEGG: smt:Smal_3563 DoxX family protein YP_004794148.1 KEGG: smt:Smal_3564 hypothetical protein YP_004794149.1 KEGG: sml:Smlt2579 sensors of blue light using FAD protein; manually curated; PFAM: BLUF YP_004794150.1 KEGG: sml:Smlt2580 hypothetical protein YP_004794151.1 KEGG: sml:Smlt2581 hypothetical protein YP_004794152.1 manually curated; PFAM: FAS1 domain; KEGG: sml:Smlt2562 exported fasciclin protein, possible adhesin; SMART: FAS1 domain YP_004794154.1 KEGG: smt:Smal_0082 hypothetical protein YP_004794155.1 KEGG: sml:Smlt4165 RNA polymerase sigma factor RpoD; TIGRFAM: RNA polymerase sigma factor RpoD, C-terminal; RNA polymerase sigma-70; PFAM: RNA polymerase sigma factor 70, non-essential region; RNA polymerase sigma factor 70, region 1.1; RNA polymerase sigma-70 region 1.2; RNA polymerase sigma-70 region 2; RNA polymerase sigma-70 region 3; RNA polymerase sigma-70 region 4 YP_004794156.1 TIGRFAM: D-tyrosyl-tRNA(Tyr) deacylase; HAMAP: D-tyrosyl-tRNA(Tyr) deacylase; KEGG: sml:Smlt4166 D-tyrosyl-tRNA(Tyr) deacylase; PFAM: D-tyrosyl-tRNA(Tyr) deacylase YP_004794157.1 PFAM: Bacterial lipid A biosynthesis acyltransferase; KEGG: smt:Smal_3574 lipid A biosynthesis lauroyl acyltransferase YP_004794158.1 HAMAP: GTP cyclohydrolase-2; KEGG: smt:Smal_3575 GTP cyclohydrolase; PFAM: GTP cyclohydrolase II YP_004794159.1 PFAM: Protein of unknown function DUF304, prokaryotic transmembrane adjacent region; KEGG: sml:Smlt4169 transmembrane protein YP_004794160.1 PFAM: Protein of unknown function DUF304, prokaryotic transmembrane adjacent region; KEGG: smt:Smal_3577 membrane-flanked domain YP_004794161.1 PFAM: CDP-glycerol glycerophosphotransferase; KEGG: sml:Smlt4171 CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase YP_004794162.1 PFAM: Glycosyl transferase, family 2; KEGG: sml:Smlt4172 lipopolysaccharide core biosynthesis glycosyl transferase YP_004794163.1 PFAM: O-antigen ligase-related; KEGG: xac:XAC3797 hypothetical protein YP_004794164.1 PFAM: Glycosyl transferase, family 39; KEGG: sml:Smlt4175 dolichyl-phosphate-mannose-protein mannosyltransferase protein YP_004794165.1 KEGG: smt:Smal_3583 sun protein; TIGRFAM: Fmu, rRNA SAM-dependent methyltransferase; PFAM: Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p; NusB/RsmB/TIM44 YP_004794166.1 PFAM: Formyl transferase, N-terminal; Formyl transferase, C-terminal; TIGRFAM: Methionyl-tRNA formyltransferase; HAMAP: Methionyl-tRNA formyltransferase; KEGG: sml:Smlt4177 methionyl-tRNA formyltransferase YP_004794167.1 KEGG: sml:Smlt4178 peptide deformylase; TIGRFAM: Formylmethionine deformylase; PFAM: Formylmethionine deformylase YP_004794168.1 manually curated; PFAM: Peptidoglycan-binding lysin domain; KEGG: smt:Smal_3586 peptidoglycan-binding LysM; SMART: Peptidoglycan-binding Lysin subgroup YP_004794169.1 KEGG: smt:Smal_3587 DNA protecting protein DprA; TIGRFAM: DNA recombination-mediator protein A; PFAM: DNA recombination-mediator protein A YP_004794170.1 KEGG: smt:Smal_3588 hypothetical protein; HAMAP: Protein smg; PFAM: Protein of unknown function DUF494 YP_004794171.1 PFAM: Fimbrial protein pilin; KEGG: sml:Smlt4182 fimbrial protein YP_004794172.1 PFAM: RDD; KEGG: smt:Smal_3590 RDD domain-containing protein YP_004794173.1 SMART: DNA topoisomerase, type IA, DNA-binding; DNA topoisomerase, type IA, domain 2; Toprim domain, subgroup; TIGRFAM: DNA topoisomerase I, bacterial-type; KEGG: sml:Smlt4184 DNA topoisomerase I; PFAM: DNA topoisomerase, type IA, central; Toprim domain YP_004794174.1 KEGG: smt:Smal_3592 SUA5/YciO/YrdC domain; HAMAP: ribosome maturation factor rimN; PFAM: Sua5/YciO/YrdC, N-terminal YP_004794175.1 KEGG: smt:Smal_3593 hypothetical protein YP_004794176.1 manually curated; KEGG: sml:Smlt4187 hypothetical protein YP_004794177.1 KEGG: sml:Smlt4188 tropinone reductase; PFAM: Short-chain dehydrogenase/reductase SDR YP_004794178.1 KEGG: smt:Smal_3596 hypothetical protein YP_004794179.1 KEGG: smt:Smal_3597 signal peptide peptidase SppA, 67K type; TIGRFAM: Peptidase S49, protease IV; Peptidase S49, SppA; PFAM: Peptidase S49 YP_004794180.1 KEGG: smt:Smal_3598 multidrug efflux protein; TIGRFAM: Multi antimicrobial extrusion protein MatE; PFAM: Multi antimicrobial extrusion protein MatE YP_004794181.1 KEGG: sml:Smlt4192 hypothetical protein YP_004794182.1 KEGG: sml:Smlt4193 transmembrane protein YP_004794183.1 TIGRFAM: Primosomal protein n; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; DNA/RNA helicase, C-terminal; KEGG: smt:Smal_3601 primosome assembly protein PriA; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal YP_004794185.1 PFAM: Glutathione S-transferase, N-terminal; Glutathione S-transferase, C-terminal; KEGG: smt:Smal_3602 glutathione S-transferase domain-containing protein YP_004794186.1 PFAM: Protein of unknown function DUF88; KEGG: sml:Smlt4196 hypothetical protein YP_004794187.1 KEGG: smt:Smal_3604 FAD-dependent pyridine nucleotide-disulfide oxidoreductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_004794188.1 KEGG: sml:Smlt4198 transmembrane protein YP_004794189.1 KEGG: sml:Smlt4199 hypothetical protein YP_004794190.1 PFAM: Excinuclease ABC, C subunit, N-terminal; KEGG: sml:Smlt4201 GIY-YIG nuclease superfamily protein YP_004794191.1 PFAM: Uncharacterised protein family UPF0126; KEGG: sml:Smlt4202 transmembrane protein YP_004794192.1 TIGRFAM: DHAP synthase, class 1; KEGG: smt:Smal_3614 phospho-2-dehydro-3-deoxyheptonate aldolase; PFAM: DAHP synthetase I/KDSA YP_004794193.1 KEGG: sml:Smlt4204 hypothetical protein YP_004794194.1 KEGG: sml:Smlt4206 hypothetical protein YP_004794195.1 KEGG: smt:Smal_3618 MarR family transcriptional regulator; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR YP_004794196.1 KEGG: sml:Smlt4208 transmembane sensor histidine kinase transcriptional regulator; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; HAMP linker domain; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region YP_004794197.1 KEGG: sml:Smlt4209 two component response regulator; PFAM: Signal transduction response regulator, receiver region; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver region YP_004794198.1 KEGG: smt:Smal_3621 hypothetical protein YP_004794199.1 PFAM: Beta-lactamase-related; KEGG: sml:Smlt4211 beta-lactamase protein YP_004794200.1 KEGG: smt:Smal_3625 hypothetical protein YP_004794201.1 TIGRFAM: Chaperonin Cpn60; HAMAP: 60 kDa chaperonin; KEGG: smt:Smal_3626 chaperonin GroEL; PFAM: Chaperonin Cpn60/TCP-1 YP_004794202.1 KEGG: smt:Smal_3627 co-chaperonin GroES; HAMAP: Chaperonin Cpn10, subgroup; PFAM: Chaperonin Cpn10 YP_004794203.1 PFAM: Endonuclease I; KEGG: sml:Smlt4216 extracellular ribonuclease YP_004794204.1 PFAM: Divalent ion tolerance protein, CutA1; KEGG: smt:Smal_3629 CutA1 divalent ion tolerance protein YP_004794205.1 KEGG: sml:Smlt4218 transmembrane thiol:disulfide interchange protein YP_004794206.1 PFAM: Redoxin; KEGG: smt:Smal_3631 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen YP_004794207.1 PFAM: Flavodoxin/nitric oxide synthase; PepSY-associated TM helix; Oxidoreductase FAD/NAD(P)-binding; KEGG: smt:Smal_3632 flavodoxin/nitric oxide synthase YP_004794208.1 KEGG: smt:Smal_3633 PAS/Pac sensor-containing methyl-accepting chemotaxis sensory transducer; PFAM: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain; PAS fold; SMART: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain; PAS YP_004794209.1 KEGG: smt:Smal_3634 N-hydroxyarylamine O-acetyltransferase; PFAM: N-acetyltransferase YP_004794210.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: smt:Smal_3635 glyoxalase/bleomycin resistance protein/dioxygenase YP_004794211.1 KEGG: smt:Smal_3636 family 3 extracellular solute-binding protein; PFAM: Extracellular solute-binding protein, family 3; SMART: Extracellular solute-binding protein, family 3 YP_004794212.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: smt:Smal_3637 LysR family transcriptional regulator YP_004794214.1 manually curated; PFAM: Alkaline phosphatase; KEGG: sml:Smlt4232 alkaline phosphatase 4; SMART: Alkaline phosphatase YP_004794215.1 manually curated; KEGG: sml:Smlt4233 family S11 unassigned peptidase; PFAM: Peptidase S11, D-alanyl-D-alanine carboxypeptidase A YP_004794216.1 PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: sml:Smlt4234 TetR family transcriptional regulator YP_004794217.1 PFAM: Flavodoxin-like fold; KEGG: smt:Smal_3642 NAD(P)H dehydrogenase (quinone) YP_004794218.1 KEGG: smt:Smal_3643 hypothetical protein YP_004794219.1 KEGG: sml:Smlt4237 lyase/mutase YP_004794220.1 PFAM: Dopa 4,5-dioxygenase; KEGG: smt:Smal_3645 Dopa 45-dioxygenase YP_004794221.1 PFAM: Dehydroquinase, class II; TIGRFAM: Dehydroquinase, class II; HAMAP: Dehydroquinase, class II; KEGG: smt:Smal_3646 3-dehydroquinate dehydratase YP_004794222.1 PFAM: Protein of unknown function DUF1311; KEGG: smt:Smal_3647 hypothetical protein YP_004794223.1 KEGG: sml:Smlt4240 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; TIGRFAM: Acetyl-CoA biotin carboxyl carrier; PFAM: Biotin/lipoyl attachment YP_004794224.1 SMART: Biotin carboxylase, C-terminal; TIGRFAM: Acetyl-CoA carboxylase, biotin carboxylase; KEGG: smt:Smal_3649 acetyl-CoA carboxylase biotin carboxylase subunit; PFAM: Carbamoyl phosphate synthetase, large subunit, ATP-binding; Biotin carboxylase, C-terminal; Carbamoyl phosphate synthase, large subunit, N-terminal YP_004794225.1 KEGG: smt:Smal_3650 hypothetical protein YP_004794226.1 KEGG: smt:Smal_3651 hypothetical protein YP_004794227.1 TIGRFAM: Ribosomal protein L11 methyltransferase; HAMAP: Ribosomal protein L11 methyltransferase; KEGG: smt:Smal_3652 ribosomal protein L11 methyltransferase; PFAM: Ribosomal L11 methyltransferase YP_004794228.1 KEGG: sml:Smlt4245 hypothetical protein YP_004794229.1 KEGG: sml:Smlt4246 DNA-binding protein fis; manually curated; PFAM: Helix-turn-helix, Fis-type YP_004794230.1 PFAM: Phosphatidate cytidylyltransferase; KEGG: sml:Smlt4247 transmembrane phosphatidate cytidylyltransferase YP_004794231.1 KEGG: sml:Smlt4248 acyltransferase; PFAM: Phospholipid/glycerol acyltransferase; SMART: Phospholipid/glycerol acyltransferase YP_004794232.1 KEGG: sml:Smlt4249 transmembrane protein YP_004794233.1 KEGG: sml:Smlt4250 transmembrane phosphatase; PFAM: Dual specificity phosphatase, catalytic domain; Phosphatidic acid phosphatase type 2/haloperoxidase; SMART: Dual specificity phosphatase, subgroup, catalytic domain YP_004794234.1 KEGG: sml:Smlt4251 hydrolase YP_004794235.1 PFAM: CDP-alcohol phosphatidyltransferase; KEGG: smt:Smal_3660 CDP-alcohol phosphatidyltransferase YP_004794236.1 KEGG: sml:Smlt4253 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; PFAM: AICARFT/IMPCHase bienzyme, formylation region; MGS-like; TIGRFAM: AICARFT/IMPCHase bienzyme; HAMAP: Bifunctional purine biosynthesis protein purH; SMART: AICARFT/IMPCHase bienzyme, formylation region YP_004794237.1 KEGG: smt:Smal_3663 hypothetical protein YP_004794238.1 PFAM: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; Phosphoribosylglycinamide synthetase, N-domain; Phosphoribosylglycinamide synthetase, C-domain; TIGRFAM: Phosphoribosylglycinamide synthetase; HAMAP: Phosphoribosylglycinamide synthetase; KEGG: sml:Smlt4254 phosphoribosylamine--glycine ligase YP_004794239.1 SMART: Helix-turn-helix type 3; KEGG: sml:Smlt4255 DNA-binding protein YP_004794240.1 KEGG: sml:Smlt4256 hypothetical protein; manually curated; PFAM: Protein of unknown function DUF1044 YP_004794241.1 KEGG: smt:Smal_3666 RNA polymerase factor sigma-32; TIGRFAM: RNA polymerase sigma factor RpoH, proteobacteria; RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma-70 region 4 YP_004794242.1 TIGRFAM: Uracil-DNA glycosylase; HAMAP: Uracil-DNA glycosylase; KEGG: smt:Smal_3670 uracil-DNA glycosylase; PFAM: Uracil-DNA glycosylase-like YP_004794243.1 KEGG: sml:Smlt4260 two-component response regulator transcriptional regulator; PFAM: Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region YP_004794244.1 PFAM: Protein of unknown function DUF214, permase predicted; KEGG: smt:Smal_3672 hypothetical protein YP_004794245.1 SMART: ATPase, AAA+ type, core; TIGRFAM: Cell division ATP-binding protein FtsE; KEGG: smt:Smal_3673 cell division ATP-binding protein FtsE; PFAM: ABC transporter-like YP_004794246.1 PFAM: Methyltransferase type 11; KEGG: pfl:PFL_1036 ToxA protein YP_004794247.1 HAMAP: ATP-dependent RNA helicase rhlB; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; DNA/RNA helicase, C-terminal; KEGG: sml:Smlt4263 ATP-dependent RNA helicase RhlB; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal YP_004794248.1 KEGG: smt:Smal_3675 thioredoxin; TIGRFAM: Thioredoxin; PFAM: Thioredoxin domain YP_004794249.1 TIGRFAM: Transcription termination factor Rho; PFAM: ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain; Rho termination factor, RNA-binding; Rho termination factor, N-terminal; KEGG: smt:Smal_3676 transcription termination factor Rho; SMART: Cold shock protein; ATPase, AAA+ type, core YP_004794250.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate cyclase, predicted; Cache; KEGG: smt:Smal_3677 diguanylate cyclase; SMART: Diguanylate cyclase, predicted YP_004794251.1 KEGG: smt:Smal_3678 TonB family protein; TIGRFAM: TonB, C-terminal; PFAM: Gram-negative bacterial tonB protein YP_004794252.1 HAMAP: Isocitrate dehydrogenase kinasephosphatase; KEGG: sml:Smlt4268 bifunctional isocitrate dehydrogenase kinase/phosphatase protein; PFAM: Isocitrate dehydrogenase kinasephosphatase YP_004794253.1 KEGG: sml:Smlt4269 hypothetical protein YP_004794254.1 PFAM: Dynein light chain-related; KEGG: smt:Smal_3681 roadblock/LC7 family protein YP_004794255.1 PFAM: MIRO-like; KEGG: sml:Smlt4271 hypothetical protein YP_004794256.1 KEGG: smt:Smal_3683 hypothetical protein YP_004794257.1 TIGRFAM: Isocitrate dehydrogenase NADP-dependent, monomeric type; KEGG: sml:Smlt4273 isocitrate dehydrogenase; PFAM: Isocitrate dehydrogenase NADP-dependent, monomeric type YP_004794258.1 KEGG: sml:Smlt4275 hypothetical protein YP_004794259.1 KEGG: smt:Smal_3686 peptidoglycan-binding LysM; PFAM: Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding Lysin subgroup YP_004794260.1 PFAM: GTP cyclohydrolase I/Nitrile oxidoreductase; TIGRFAM: Nitrile oxidoreductase, NADPH-dependent, YqcD; HAMAP: Nitrile oxidoreductase, NADPH-dependent, YqcD; KEGG: sml:Smlt4277 7-cyano-7-deazaguanine reductase YP_004794261.1 TIGRFAM: Peptidase M20D, amidohydrolase; KEGG: sml:Smlt4278 amidohydrolase; PFAM: Peptidase M20; Peptidase M20, dimerisation YP_004794262.1 KEGG: smt:Smal_3689 RND family efflux transporter MFP subunit; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD YP_004794263.1 PFAM: Acriflavin resistance protein; KEGG: sml:Smlt4280 multidrug efflux system transmembrane protein YP_004794264.1 PFAM: Acriflavin resistance protein; KEGG: sml:Smlt4281 AcrB/AcrD/AcrF family protein YP_004794265.1 TIGRFAM: Integral membrane protein, YccS/YhfK; Intergral membrane protein, YccS; KEGG: smt:Smal_3693 YccS/YhfK family integral membrane protein YP_004794266.1 KEGG: sml:Smlt4283 short-chain dehydrogenase/oxidoreductase; PFAM: Short-chain dehydrogenase/reductase SDR YP_004794267.1 KEGG: smt:Smal_3695 phospholipid/glycerol acyltransferase; PFAM: Phospholipid/glycerol acyltransferase; Major facilitator superfamily MFS-1; SMART: Phospholipid/glycerol acyltransferase YP_004794268.1 PFAM: Interferon-induced transmembrane protein; KEGG: smt:Smal_3696 interferon-induced transmembrane protein YP_004794269.1 PFAM: Interferon-induced transmembrane protein; KEGG: smt:Smal_3697 interferon-induced transmembrane protein YP_004794270.1 KEGG: sml:Smlt4287 transmembrane protein YP_004794271.1 KEGG: smt:Smal_3699 signaling modulator of AmpD, AmpE YP_004794272.1 KEGG: sml:Smlt4290 NADH pyrophosphatase; PFAM: NUDIX hydrolase domain; NADH pyrophosphatase-like, N-terminal; Zinc ribbon, NADH pyrophosphatase YP_004794273.1 TIGRFAM: FeS cluster insertion; HAMAP: Iron--sulfur cluster insertion protein erpA; KEGG: sml:Smlt4291 iron-sulfur cluster insertion protein ErpA; PFAM: FeS cluster biogenesis YP_004794274.1 PFAM: Protein of unknown function DUF583; KEGG: smt:Smal_3702 hypothetical protein YP_004794275.1 KEGG: sml:Smlt4293 transmembrane protein YP_004794276.1 KEGG: smt:Smal_3704 hypothetical protein YP_004794277.1 KEGG: smt:Smal_3705 response regulator receiver modulated diguanylate cyclase/phosphodiesterase; PFAM: Diguanylate phosphodiesterase, predicted; Signal transduction response regulator, receiver region; Diguanylate cyclase, predicted; SMART: Signal transduction response regulator, receiver region; Diguanylate cyclase, predicted; Diguanylate phosphodiesterase, predicted YP_004794278.1 KEGG: sml:Smlt4296 sensor histidine kinase protein; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; Signal transduction response regulator, receiver region; Signal transduction histidine kinase, phosphotransfer (Hpt) region; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; Signal transduction response regulator, receiver region; Signal transduction histidine kinase, phosphotransfer (Hpt) region YP_004794279.1 KEGG: smt:Smal_3707 bacterioferritin; TIGRFAM: Bacterioferritin; PFAM: Ferritin/Dps protein YP_004794280.1 PFAM: BFD-like [2Fe-2S]-binding region; KEGG: sml:Smlt4298 bacterioferritin ferredoxin protein YP_004794281.1 KEGG: sml:Smlt4299 dinucleoside polyphosphate hydrolase; HAMAP: RNA pyrophosphohydrolase; PFAM: NUDIX hydrolase domain YP_004794282.1 PFAM: Ribosomal protein S9; KEGG: smt:Smal_3710 30S ribosomal protein S9 YP_004794283.1 KEGG: sml:Smlt4302 50S ribosomal protein L13; TIGRFAM: Ribosomal protein L13, bacterial-type; PFAM: Ribosomal protein L13 YP_004794284.1 HAMAP: 2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; KEGG: smt:Smal_3712 ubiquinone biosynthesis protein YP_004794285.1 PFAM: Small multidrug resistance protein; KEGG: smt:Smal_3713 small multidrug resistance protein YP_004794286.1 PFAM: S-adenosylmethionine decarboxylase, bacterial/archaeal; TIGRFAM: S-adenosylmethionine decarboxylase, bacterial; HAMAP: S-adenosylmethionine decarboxylase proenzyme; KEGG: smt:Smal_3714 S-adenosylmethionine decarboxylase YP_004794287.1 KEGG: smt:Smal_3715 cAMP-regulatory protein; PFAM: Cyclic nucleotide-binding; HTH transcriptional regulator, Crp; SMART: Cyclic nucleotide-binding; HTH transcriptional regulator, Crp YP_004794288.1 PFAM: Protein of unknown function DUF81; KEGG: smt:Smal_3716 hypothetical protein YP_004794289.1 PFAM: Haloacid dehalogenase-like hydrolase; KEGG: smt:Smal_3717 haloacid dehalogenase domain-containing protein hydrolase YP_004794290.1 KEGG: sml:Smlt4309 indole-3-glycerol-phosphate synthase; PFAM: Indole-3-glycerol phosphate synthase YP_004794291.1 PFAM: Glycosyl transferase, family 3; Glycosyl transferase, family 3, N-terminal; TIGRFAM: Anthranilate phosphoribosyl transferase; HAMAP: Anthranilate phosphoribosyl transferase; KEGG: smt:Smal_3719 anthranilate phosphoribosyltransferase YP_004794292.1 TIGRFAM: Glutamine amidotransferase of anthranilate synthase; KEGG: sml:Smlt4311 anthranilate synthase component II; PFAM: Glutamine amidotransferase class-I, C-terminal YP_004794293.1 PFAM: Protein of unknown function DUF541; KEGG: sml:Smlt4312 hypothetical protein YP_004794294.1 TIGRFAM: Anthranilate synthase component I; KEGG: sml:Smlt4313 anthranilate synthase component I; PFAM: Chorismate binding, C-terminal; Anthranilate synthase component I, N-terminal YP_004794295.1 SMART: Diacylglycerol kinase, catalytic region; TIGRFAM: lipid kinase YegS; Conserved hypothetical protein CHP00147; KEGG: smt:Smal_3723 lipid kinase; HAMAP: lipid kinase yegS; PFAM: Diacylglycerol kinase, catalytic region YP_004794296.1 PFAM: GCN5-related N-acetyltransferase; KEGG: sml:Smlt4315 acetyltransferase YP_004794297.1 TIGRFAM: Ribulose-phosphate 3-epimerase; KEGG: sml:Smlt4316 ribulose-phosphate 3-epimerase; PFAM: Ribulose-phosphate 3-epimerase YP_004794298.1 KEGG: sml:Smlt4317 transmembrane heat shock chaperone protein; PFAM: Heat shock protein DnaJ, N-terminal; SMART: Heat shock protein DnaJ, N-terminal YP_004794299.1 PFAM: SAICAR synthetase; TIGRFAM: SAICAR synthetase; HAMAP: Phosphoribosylaminoimidazole-succinocarboxamide synthase; KEGG: sml:Smlt4318 phosphoribosylaminoimidazole-succinocarboxamide synthase YP_004794300.1 KEGG: sml:Smlt4319 transmembrane protein YP_004794301.1 KEGG: sml:Smlt4320 monovalent cation/H+ antiporter subunit A; PFAM: NADH:ubiquinone/plastoquinone oxidoreductase; NADH:ubiquinone oxidoreductase, chain 5/L, N-terminal; Na+/H+ antiporter MnhB subunit-related protein YP_004794302.1 PFAM: NADH:ubiquinone/quinone oxidoreductase, chain 4L; KEGG: smt:Smal_3730 monovalent cation/H+ antiporter subunit C YP_004794303.1 KEGG: smt:Smal_3731 monovalent cation/H+ antiporter subunit D; PFAM: NADH:ubiquinone/plastoquinone oxidoreductase YP_004794304.1 PFAM: cation antiporter; KEGG: sml:Smlt4323 monovalent cation/H+ antiporter subunit E YP_004794305.1 PFAM: Multiple resistance and pH regulation protein F; KEGG: smt:Smal_3733 monovalent cation/H+ antiporter subunit F YP_004794306.1 KEGG: smt:Smal_3734 monovalent cation/H+ antiporter subunit G; TIGRFAM: Na+/H+ antiporter subunit; PFAM: Na+/H+ antiporter subunit YP_004794307.1 KEGG: sml:Smlt4326 transmembrane sodium/calcium exchanger protein; TIGRFAM: K+-dependent Na+/Ca+ exchanger-like; PFAM: Sodium/calcium exchanger membrane region YP_004794308.1 KEGG: sml:Smlt4327 hypothetical protein YP_004794309.1 KEGG: smt:Smal_3737 hypothetical protein YP_004794310.1 PFAM: Homogentisate 1,2-dioxygenase; TIGRFAM: Homogentisate 1,2-dioxygenase; HAMAP: Homogentisate 1,2-dioxygenase; KEGG: sml:Smlt4329 homogentisate 1,2-dioxygenase YP_004794311.1 TIGRFAM: 4-hydroxyphenylpyruvate dioxygenase; KEGG: sml:Smlt4330 4-hydroxyphenylpyruvate dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase YP_004794312.1 KEGG: smt:Smal_3740 MarR family transcriptional regulator; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR YP_004794313.1 KEGG: smt:Smal_3742 hypothetical protein YP_004794314.1 KEGG: smt:Smal_3743 thioredoxin YP_004794315.1 KEGG: sml:Smlt4335 peptide transport protein; TIGRFAM: Amino acid/peptide transporter; PFAM: Oligopeptide transporter YP_004794316.1 PFAM: Tryptophan 2,3-dioxygenase; KEGG: sml:Smlt4336 tryptophan oxygenase YP_004794317.1 TIGRFAM: Pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit subgroup x; KEGG: sml:Smlt4338 pyruvate dehydrogenase E1 component subunit alpha; PFAM: Dehydrogenase, E1 component YP_004794318.1 KEGG: sml:Smlt4339 branched-chain alpha keto acid dehydrogenase E1 beta subunit; PFAM: Transketolase-like, pyrimidine-binding domain; Transketolase, C-terminal YP_004794319.1 KEGG: smt:Smal_3748 variant SH3 domain-containing protein; PFAM: Variant SH3; SMART: Src homology-3 domain YP_004794320.1 KEGG: sml:Smlt4341 branched-chain alpha-keto acid dehydrogenase subunit E2; PFAM: 2-oxoacid dehydrogenase acyltransferase, catalytic domain; Biotin/lipoyl attachment; E3 binding YP_004794321.1 KEGG: smt:Smal_3750 hypothetical protein YP_004794322.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: smt:Smal_3751 glyoxalase/bleomycin resistance protein/dioxygenase YP_004794323.1 KEGG: smt:Smal_3752 helix-turn-helix type 11 domain-containing protein YP_004794324.1 KEGG: smt:Smal_3753 NAD-dependent epimerase/dehydratase YP_004794325.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate cyclase, predicted; KEGG: sml:Smlt4345 GGDEF signalling protein; SMART: Diguanylate cyclase, predicted YP_004794326.1 PFAM: Protein of unknown function DUF808; KEGG: smt:Smal_3755 hypothetical protein YP_004794327.1 PFAM: ABC-1; KEGG: sml:Smlt4347 ABC transporter protein YP_004794328.1 KEGG: smt:Smal_3757 phosphoglycerol transferase I; PFAM: Sulfatase YP_004794329.1 PFAM: Mechanosensitive ion channel MscS; KEGG: sml:Smlt4350 ion channel transmembrane protein YP_004794330.1 KEGG: smt:Smal_3759 hypothetical protein YP_004794331.1 PFAM: Lipocalin-like; KEGG: smt:Smal_3760 lipocalin family protein YP_004794332.1 KEGG: sml:Smlt1456 hypothetical protein; manually curated; PFAM: Cell wall assembly/cell proliferation coordinating protein, KNR4-like YP_004794333.1 PFAM: FAD dependent oxidoreductase; KEGG: smt:Smal_3761 FAD dependent oxidoreductase YP_004794334.1 KEGG: sml:Smlt4356 hypothetical protein YP_004794335.1 KEGG: smt:Smal_3763 hypothetical protein YP_004794336.1 KEGG: sml:Smlt4359 hypothetical protein YP_004794337.1 KEGG: sml:Smlt4360 two-component system response regulator; PFAM: Signal transduction response regulator, receiver region; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver region YP_004794338.1 KEGG: sml:Smlt4361 two-component sensor histidine kinase; PFAM: ATP-binding region, ATPase-like; HAMP linker domain; SMART: ATP-binding region, ATPase-like YP_004794339.1 KEGG: smt:Smal_3767 hypothetical protein YP_004794340.1 TIGRFAM: Arginine decarboxylase; KEGG: smt:Smal_3768 arginine decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2 YP_004794341.1 TIGRFAM: Spermine synthase; KEGG: sml:Smlt4365 spermidine synthase; PFAM: Spermine synthase YP_004794342.1 PFAM: Aspartyl/Asparaginyl beta-hydroxylase; KEGG: sml:Smlt4366 beta-hydroxylase YP_004794343.1 PFAM: RIO-like kinase; KEGG: smt:Smal_3771 Mn2+-dependent serine/threonine protein kinase YP_004794344.1 PFAM: Nitrogen regulatory protein PII; KEGG: smt:Smal_3772 nitrogen regulatory protein P-II YP_004794345.1 PFAM: Protein of unknown function DUF526; KEGG: sml:Smlt4371 hypothetical protein YP_004794346.1 KEGG: sml:Smlt4372 ADP-ribosylating transferase YP_004794347.1 KEGG: vap:Vapar_2297 hypothetical protein YP_004794349.1 PFAM: Ankyrin repeat; KEGG: sin:YN1551_2013 ankyrin YP_004794350.1 KEGG: sml:Smlt4378 transmembrane protein YP_004794351.1 KEGG: eba:ebA2464 hypothetical protein YP_004794352.1 KEGG: smt:Smal_3779 hypothetical protein YP_004794353.1 KEGG: sml:Smlt4381 cold shock protein YP_004794354.1 PFAM: Abortive infection bacteriophage resistance related; KEGG: xcb:XC_0331 hypothetical protein YP_004794355.1 KEGG: pbr:PB2503_03537 hypothetical protein YP_004794356.1 KEGG: smt:Smal_3783 hypothetical protein YP_004794357.1 PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: smt:Smal_3784 TonB-dependent receptor YP_004794358.1 KEGG: smt:Smal_3785 sugar phosphatase; TIGRFAM: Cof protein; HAD-superfamily hydrolase, subfamily IIB; PFAM: HAD superfamily hydrolase-like, type 3 YP_004794359.1 PFAM: Exopolysaccharide synthesis, ExoD; KEGG: smt:Smal_3786 exopolysaccharide synthesis ExoD YP_004794360.1 KEGG: smt:Smal_3787 L-sorbosone dehydrogenase YP_004794361.1 KEGG: sml:Smlt4392A hypothetical protein YP_004794362.1 KEGG: sml:Smlt4394 hypothetical protein YP_004794363.1 PFAM: Peptidase S8/S53, subtilisin/kexin/sedolisin; Proprotein convertase, P; KEGG: sml:Smlt4395 serine protease YP_004794364.1 KEGG: sml:Smlt4396 hypothetical protein YP_004794365.1 PFAM: Copper chaperone SCO1/SenC; KEGG: sml:Smlt4397 SCO1/SenC family protein YP_004794366.1 KEGG: smt:Smal_3792 cytochrome o ubiquinol oxidase subunit IV; TIGRFAM: Cytochrome o ubiquinol oxidase subunit IV; PFAM: Cytochrome C oxidase subunit IV prokaryotic YP_004794367.1 KEGG: sml:Smlt4399 cytochrome o ubiquinol oxidase subunit III; TIGRFAM: Cytochrome o ubiquinol oxidase, subunit III; PFAM: Cytochrome c oxidase, subunit III YP_004794368.1 TIGRFAM: Cytochrome o ubiquinol oxidase, subunit I; KEGG: sml:Smlt4400 ubiquinol oxidase polypeptide I; PFAM: Cytochrome c oxidase, subunit I YP_004794369.1 KEGG: sml:Smlt4401 cytochrome o ubiquinol oxidase subunit II; TIGRFAM: Cytochrome o ubiquinol oxidase subunit II; PFAM: COX aromatic rich; Cytochrome c oxidase subunit II C-terminal YP_004794370.1 KEGG: smt:Smal_3796 GntR family transcriptional regulator with aminotransferase domain; PFAM: HTH transcriptional regulator, GntR; Aminotransferase, class I/II; SMART: HTH transcriptional regulator, GntR YP_004794371.1 KEGG: smt:Smal_3797 hypothetical protein YP_004794372.1 KEGG: sml:Smlt4404 hypothetical protein YP_004794373.1 KEGG: smt:Smal_3799 GntR family transcriptional regulator with aminotransferase domain; PFAM: HTH transcriptional regulator, GntR; Aminotransferase, class I/II; SMART: HTH transcriptional regulator, GntR YP_004794374.1 PFAM: Aminotransferase, class V/Cysteine desulfurase; KEGG: sml:Smlt4409 exported aminotransferase class-V YP_004794375.1 PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: sml:Smlt4410 TonB dependent ferric enterobactin receptor YP_004794376.1 KEGG: sml:Smlt4411 transmembrane protein YP_004794377.1 KEGG: sml:Smlt4412 AraC family transcriptional regulator; PFAM: Bacterial transcription activator, effector binding; Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain YP_004794378.1 KEGG: sml:Smlt4413 hypothetical protein YP_004794379.1 KEGG: sml:Smlt4414 hypothetical protein YP_004794380.1 KEGG: pfs:PFLU3412 hypothetical protein YP_004794381.1 PFAM: Peptidase M3A/M3B, thimet/oligopeptidase F; KEGG: smt:Smal_3803 peptidase M3A and M3B thimet/oligopeptidase F YP_004794382.1 KEGG: smt:Smal_3804 hypothetical protein YP_004794383.1 KEGG: sml:Smlt4418 hypothetical protein YP_004794384.1 KEGG: smt:Smal_3806 hypothetical protein YP_004794385.1 PFAM: Short chain fatty acid transporter; KEGG: smt:Smal_3807 short chain fatty acid transporter YP_004794386.1 TIGRFAM: 4-hydroxybenzoate polyprenyl transferase; HAMAP: 4-hydroxybenzoate octaprenyltransferase; KEGG: sml:Smlt4422 4-hydroxybenzoate octaprenyltransferase; PFAM: UbiA prenyltransferase YP_004794387.1 KEGG: smt:Smal_3809 AraC family transcriptional regulator; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain YP_004794388.1 SMART: PDZ/DHR/GLGF; KEGG: smt:Smal_3810 hypothetical protein YP_004794389.1 KEGG: sml:Smlt4423 AfaD non-fimbrial adhesin YP_004794390.1 KEGG: sml:Smlt4424 transmembrane protein YP_004794392.1 KEGG: sml:Smlt4426 hypothetical protein YP_004794394.1 TIGRFAM: RHS repeat-associated core domain-containing protein; KEGG: sml:Smlt2792 rhs family transmembrane protein YP_004794395.1 KEGG: sml:Smlt2792 rhs family transmembrane protein; TIGRFAM: RHS repeat-associated core domain-containing protein; YD repeat; PFAM: YD repeat YP_004794396.1 KEGG: sml:Smlt4430 rhs family exported protein; TIGRFAM: YD repeat; PFAM: YD repeat YP_004794397.1 KEGG: sml:Smlt4431 NAD binding oxidoreductase; PFAM: Oxidoreductase, N-terminal YP_004794398.1 PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: sml:Smlt4432 TonB dependent receptor protein YP_004794399.1 KEGG: smt:Smal_3814 glycoside hydrolase family 31; PFAM: Glycoside hydrolase, family 31; Coagulation factor 5/8 type, C-terminal; Glycosyl hydrolase family 98, carbohydrate-binding module; SMART: Glycosyl hydrolase family 98, carbohydrate-binding module YP_004794400.1 PFAM: Sugar isomerase (SIS); KEGG: sml:Smlt4434 sugar isomerase YP_004794401.1 KEGG: smt:Smal_3816 ROK family protein; PFAM: ROK YP_004794402.1 KEGG: sml:Smlt4436 tagatose 6-phosphate kinase; TIGRFAM: D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit AgaZ; PFAM: D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit AgaZ YP_004794403.1 KEGG: smt:Smal_3818 DNA-binding transcriptional regulator AgaR; PFAM: HTH transcriptional regulator, DeoR; HTH transcriptional regulator, DeoR N-terminal; SMART: HTH transcriptional regulator, DeoR N-terminal YP_004794404.1 TIGRFAM: N-acetylglucosamine-6-phosphate deacetylase; KEGG: smt:Smal_3819 N-acetylglucosamine-6-phosphate deacetylase; PFAM: Amidohydrolase 1 YP_004794405.1 PFAM: General substrate transporter; KEGG: smt:Smal_3820 general substrate transporter YP_004794406.1 KEGG: sml:Smlt4440 hypothetical protein YP_004794407.1 KEGG: sml:Smlt4441 transmembrane protein YP_004794408.1 KEGG: smt:Smal_3823 competence protein F YP_004794409.1 PFAM: Chloride channel, voltage gated; KEGG: smt:Smal_3825 chloride channel core YP_004794410.1 KEGG: cpi:Cpin_5701 NLI interacting domain protein; PFAM: NLI interacting factor; SMART: NLI interacting factor YP_004794411.1 KEGG: dal:Dalk_5006 hypothetical protein YP_004794412.1 KEGG: sml:Smlt4459 biotin synthase; PFAM: Biotin/thiamin synthesis-associated protein; Radical SAM; TIGRFAM: Biotin synthase; HAMAP: Biotin synthase; SMART: Elongator protein 3/MiaB/NifB YP_004794413.1 PFAM: Aminotransferase, class I/II; TIGRFAM: 8-amino-7-oxononanoate synthase; HAMAP: 8-amino-7-oxononanoate synthase; KEGG: sml:Smlt4460 8-amino-7-oxononanoate synthase YP_004794414.1 PFAM: Alpha/beta hydrolase fold-1; TIGRFAM: BioH; HAMAP: Carboxylesterase bioH; KEGG: smt:Smal_3829 BioH protein YP_004794415.1 KEGG: sml:Smlt4462 short chain dehydrogenase; PFAM: Short-chain dehydrogenase/reductase SDR YP_004794416.1 KEGG: smt:Smal_3831 biotin biosynthesis protein BioC; TIGRFAM: Biotin biosynthesis protein BioC; PFAM: Methyltransferase type 11 YP_004794417.1 PFAM: Protein of unknown function DUF218; KEGG: smt:Smal_3832 hypothetical protein YP_004794418.1 KEGG: smt:Smal_3833 pyridoxal-5'-phosphate-dependent protein subunit beta; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit YP_004794419.1 KEGG: smt:Smal_3834 hypothetical protein YP_004794420.1 TIGRFAM: Glucose-inhibited division protein A; HAMAP: Glucose-inhibited division protein A; KEGG: sml:Smlt4473 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; PFAM: Glucose-inhibited division protein A-related YP_004794421.1 KEGG: smt:Smal_3836 NodT family RND efflux system outer membrane lipoprotein; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT; PFAM: Outer membrane efflux protein YP_004794422.1 KEGG: smt:Smal_3837 hydrophobe/amphiphile efflux-1 (HAE1) family transporter; TIGRFAM: Hydrophobe/amphiphile efflux-1 HAE1; PFAM: Acriflavin resistance protein YP_004794423.1 KEGG: smt:Smal_3838 RND family efflux transporter MFP subunit; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD YP_004794424.1 KEGG: smt:Smal_3839 integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase-like; HAMP linker domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; HAMP linker domain YP_004794425.1 KEGG: smt:Smal_3840 winged helix family two component transcriptional regulator; PFAM: Signal transduction response regulator, receiver region; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver region YP_004794426.1 PFAM: Nucleotidyltransferase, predicted; KEGG: smt:Smal_3841 hypothetical protein YP_004794427.1 KEGG: smt:Smal_3842 transferase YP_004794428.1 PFAM: RDD; KEGG: smt:Smal_3843 RDD domain-containing protein YP_004794429.1 PFAM: Protein of unknown function DUF95, transmembrane; KEGG: smt:Smal_3844 hypothetical protein YP_004794430.1 KEGG: smt:Smal_3845 hypothetical protein YP_004794431.1 KEGG: sml:Smlt4484 hypothetical protein YP_004794432.1 KEGG: sml:Smlt4485 ATPase; PFAM: ATPase associated with various cellular activities, AAA-3; SMART: ATPase, AAA+ type, core YP_004794433.1 PFAM: Protein of unknown function DUF58; KEGG: smt:Smal_3848 hypothetical protein YP_004794434.1 KEGG: sml:Smlt4489 hypothetical protein YP_004794435.1 PFAM: Glutathionylspermidine synthase; KEGG: sml:Smlt4490 glutathionylspermidine synthetase YP_004794436.1 PFAM: Protein of unknown function DUF1190; KEGG: smt:Smal_3850 hypothetical protein YP_004794437.1 PFAM: Dihydroxy-acid/6-phosphogluconate dehydratase; TIGRFAM: Dihydroxy-acid dehydratase; HAMAP: Dihydroxy-acid dehydratase; KEGG: sml:Smlt4492 dihydroxy-acid dehydratase YP_004794438.1 KEGG: smt:Smal_3853 hypothetical protein YP_004794439.1 SMART: Helicase, ATP-dependent, c2 type; KEGG: sml:Smlt4493 ATP-dependent DNA helicase DinG YP_004794440.1 KEGG: smt:Smal_3855 hypothetical protein YP_004794441.1 TIGRFAM: Quinate/shikimate 5-dehydrogenase; HAMAP: Shikimate dehydrogenase; KEGG: sml:Smlt4495 shikimate 5-dehydrogenase; PFAM: Shikimate dehydrogenase substrate binding, N-terminal; Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase YP_004794442.1 PFAM: WD40-like Beta Propeller; KEGG: smt:Smal_3857 WD40 domain-containing protein YP_004794443.1 KEGG: smt:Smal_3858 hypothetical protein YP_004794444.1 KEGG: sml:Smlt4497 delta-aminolevulinic acid dehydratase; PFAM: Tetrapyrrole biosynthesis, porphobilinogen synthase YP_004794445.1 KEGG: sml:Smlt4498 transmembrane protein YP_004794446.1 KEGG: smt:Smal_3861 hypothetical protein YP_004794447.1 KEGG: smt:Smal_3862 hypothetical protein YP_004794448.1 PFAM: Protein of unknown function DUF885, bacterial; KEGG: sml:Smlt4501 hypothetical protein YP_004794449.1 KEGG: smt:Smal_3864 hypothetical protein YP_004794450.1 KEGG: sml:Smlt4503 exported dipeptidyl peptidase IV; PFAM: Peptidase S9B, dipeptidylpeptidase IV N-terminal; Peptidase S9, prolyl oligopeptidase, catalytic domain YP_004794451.1 PFAM: Glutathione S-transferase, C-terminal; Glutathione S-transferase, N-terminal; KEGG: sml:Smlt4504 glutathione S transferase YP_004794452.1 TIGRFAM: Uncharacterised protein family UPF0114, bacteria; HAMAP: Uncharacterised protein family UPF0114, gammaproteobacteria; KEGG: sml:Smlt4505 hypothetical protein; PFAM: Uncharacterised protein family UPF0114, prokaryotic YP_004794453.1 KEGG: sml:Smlt4506 TonB dependent receptor protein; TIGRFAM: TonB, C-terminal; PFAM: Gram-negative bacterial tonB protein YP_004794454.1 KEGG: smt:Smal_3869 hypothetical protein YP_004794455.1 KEGG: smt:Smal_3870 AraC family transcriptional regulator; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain YP_004794456.1 KEGG: pst:PSPTO_2613 hypothetical protein YP_004794457.1 KEGG: smt:Smal_3872 ABC transporter sodium permease YP_004794458.1 PFAM: ABC transporter-like; KEGG: smt:Smal_3873 ABC transporter-like protein; SMART: ATPase, AAA+ type, core YP_004794459.1 PFAM: Peptidase S33, tripeptidyl-peptidase C-terminal; Alpha/beta hydrolase fold-1; KEGG: smt:Smal_3874 TAP domain-containing protein YP_004794460.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate cyclase, predicted; KEGG: smt:Smal_3875 diguanylate cyclase; SMART: Diguanylate cyclase, predicted YP_004794461.1 PFAM: Protein of unknown function DUF1203; KEGG: sml:Smlt4514 hypothetical protein YP_004794462.1 PFAM: Chitin-binding, domain 3; KEGG: smt:Smal_3877 chitin-binding domain 3 protein YP_004794463.1 PFAM: Chitin-binding, domain 3; KEGG: smt:Smal_3878 chitin-binding domain 3 protein YP_004794464.1 KEGG: smt:Smal_3879 oxidoreductase FAD/NAD(P)-binding domain-containing protein; manually curated; PFAM: Oxidoreductase FAD/NAD(P)-binding; Oxidoreductase FAD-binding region YP_004794465.1 PFAM: ABC transporter-like; KEGG: sml:Smlt4518 ABC transporter ATP-binding protein; SMART: ATPase, AAA+ type, core YP_004794466.1 PFAM: ABC-2 type transporter; KEGG: sml:Smlt4519 ABC transporter transmembrane protein YP_004794467.1 KEGG: smt:Smal_3882 hypothetical protein YP_004794468.1 TIGRFAM: Ketopantoate reductase ApbA/PanE; KEGG: sml:Smlt4521 2-dehydropantoate 2-reductase; PFAM: Ketopantoate reductase ApbA/PanE, N-terminal; Ketopantoate reductase ApbA/PanE, C-terminal YP_004794469.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: smt:Smal_3884 NAD-dependent epimerase/dehydratase YP_004794470.1 PFAM: Deoxyribonuclease, TatD-related; KEGG: smt:Smal_3885 TatD-related deoxyribonuclease YP_004794471.1 TIGRFAM: RNA helicase, ATP-dependent DEAH box, HrpB type; PFAM: RNA helicase, ATP-dependent, HrpB type, C-terminal; DNA/RNA helicase, C-terminal; Helicase-associated region; KEGG: smt:Smal_3886 ATP-dependent helicase HrpB; SMART: DNA/RNA helicase, C-terminal; DEAD-like helicase, N-terminal YP_004794472.1 KEGG: sml:Smlt4525 transmembrane protein YP_004794473.1 KEGG: smt:Smal_3888 pseudouridine synthase; TIGRFAM: Pseudouridine synthase, RsuA and RluB/E/F; PFAM: Pseudouridine synthase, RsuA and RluB/C/D/E/F YP_004794474.1 KEGG: sml:Smlt4527 transmembrane protein YP_004794475.1 KEGG: smt:Smal_3890 methyltransferase YP_004794476.1 PFAM: Aldo/keto reductase; KEGG: smt:Smal_3891 aldo/keto reductase YP_004794477.1 KEGG: sml:Smlt4532 hypothetical protein; PFAM: Band 7 protein; SMART: Band 7 protein YP_004794478.1 PFAM: Uncharacterised protein family UPF0027; KEGG: smt:Smal_3893 hypothetical protein YP_004794479.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: sml:Smlt4534 FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_004794480.1 PFAM: Transcriptional regulator, Rrf2; KEGG: smt:Smal_3895 BadM/Rrf2 family transcriptional regulator YP_004794481.1 KEGG: sml:Smlt4536 methyl-accepting chemotaxis protein; PFAM: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain; SMART: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain YP_004794482.1 KEGG: sml:Smlt4539 aldo-keto reductase/oxidase; PFAM: Aldo/keto reductase YP_004794483.1 PFAM: Alpha/beta hydrolase fold-1; KEGG: smt:Smal_3900 alpha/beta hydrolase fold domain-containing protein YP_004794484.1 KEGG: smt:Smal_3901 hypothetical protein; HAMAP: UPF0145 protein ybjQ; PFAM: Uncharacterised protein family UPF0145 YP_004794485.1 PFAM: GCN5-related N-acetyltransferase; CoA-binding; KEGG: sml:Smlt4550 acyl-CoA synthetase YP_004794486.1 TIGRFAM: Divalent cation transporter; PFAM: MgtE integral membrane region; Magnesium transporter, MgtE intracellular region; Cystathionine beta-synthase, core; KEGG: smt:Smal_3903 magnesium transporter; SMART: Cystathionine beta-synthase, core YP_004794487.1 KEGG: smt:Smal_3904 potassium efflux system protein; TIGRFAM: K+/H+ exchanger; PFAM: Cation/H+ exchanger; Regulator of K+ conductance, N-terminal YP_004794488.1 KEGG: sml:Smlt4553 transmembrane ankyrin repeat-containing protein YP_004794489.1 KEGG: sml:Smlt4554 transmembrane protein; HAMAP: YcgL domain; PFAM: YcgL domain YP_004794491.1 KEGG: smt:Smal_3907 hypothetical protein YP_004794492.1 KEGG: smt:Smal_3908 3-oxoacyl-(ACP) synthase II; PFAM: Beta-ketoacyl synthase, C-terminal; Beta-ketoacyl synthase, N-terminal YP_004794493.1 TIGRFAM: 3-oxoacyl-ACP reductase, KEGG: smt:Smal_3909 3-oxoacyl-ACP reductase; PFAM: Short-chain dehydrogenase/reductase SDR YP_004794494.1 KEGG: smt:Smal_3910 hypothetical protein YP_004794495.1 KEGG: smt:Smal_3911 beta-ketoacyl synthase; PFAM: Beta-ketoacyl synthase, C-terminal; Beta-ketoacyl synthase, N-terminal YP_004794496.1 KEGG: smt:Smal_3912 hypothetical protein YP_004794497.1 PFAM: Monooxygenase, FAD-binding; KEGG: smt:Smal_3913 monooxygenase FAD-binding YP_004794498.1 KEGG: sml:Smlt4562 transmembrane protein YP_004794499.1 PFAM: Outer membrane lipoprotein carrier protein LolA; KEGG: sml:Smlt4563 exported lipoprotein YP_004794500.1 PFAM: Thioesterase superfamily; KEGG: smt:Smal_3916 thioesterase superfamily protein YP_004794501.1 KEGG: smt:Smal_3917 histidine ammonia-lyase; PFAM: Phenylalanine/histidine ammonia-lyase YP_004794502.1 KEGG: smt:Smal_3918 lipid A biosynthesis acyltransferase YP_004794503.1 PFAM: Glycosyl transferase, family 2; KEGG: sml:Smlt4567 glycosyltransferase YP_004794504.1 PFAM: AMP-dependent synthetase/ligase; KEGG: smt:Smal_3920 AMP-dependent synthetase and ligase YP_004794505.1 KEGG: smt:Smal_3921 hypothetical protein YP_004794506.1 PFAM: Phosphopantetheine-binding; KEGG: sml:Smlt4570 ACP YP_004794507.1 KEGG: smt:Smal_3923 ACP YP_004794508.1 KEGG: smt:Smal_3924 phospholipid/glycerol acyltransferase; PFAM: Phospholipid/glycerol acyltransferase; SMART: Phospholipid/glycerol acyltransferase YP_004794509.1 KEGG: smt:Smal_3925 hypothetical protein YP_004794510.1 KEGG: smt:Smal_3926 cytochrome d ubiquinol oxidase subunit II; TIGRFAM: Cytochrome bd ubiquinol oxidase, subunit II; PFAM: Cytochrome bd ubiquinol oxidase, subunit II YP_004794511.1 PFAM: Cytochrome bd ubiquinol oxidase, subunit I; KEGG: smt:Smal_3927 cytochrome bd ubiquinol oxidase subunit I YP_004794512.1 KEGG: sml:Smlt4578 transmembrane protein YP_004794513.1 KEGG: sml:Smlt4579 RNA polymerase sigma factor; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2 YP_004794514.1 KEGG: sml:Smlt4580 transmembrane protein YP_004794515.1 KEGG: smt:Smal_3933 peptidase S9 prolyl oligopeptidase active site domain-containing protein YP_004794516.1 PFAM: NUDIX hydrolase domain; KEGG: smt:Smal_3934 NUDIX hydrolase YP_004794517.1 KEGG: smt:Smal_3935 hypothetical protein YP_004794518.1 KEGG: smt:Smal_3936 hypothetical protein YP_004794519.1 KEGG: smt:Smal_3937 hypothetical protein YP_004794520.1 HAMAP: Coproporphyrinogen-III oxidase, aerobic; KEGG: smt:Smal_3938 coproporphyrinogen III oxidase; PFAM: Coproporphyrinogen III oxidase YP_004794521.1 KEGG: smt:Smal_3939 hypothetical protein YP_004794522.1 PFAM: Protein of unknown function DUF421; KEGG: smt:Smal_3940 hypothetical protein YP_004794523.1 TIGRFAM: DNA polymerase 1; PFAM: DNA-directed DNA polymerase, family A, palm domain; 5'-3' exonuclease, N-terminal resolvase-like domain; 5'-3' exonuclease, SAM-fold domain; 3'-5' exonuclease; KEGG: smt:Smal_3941 DNA polymerase I; SMART: DNA-directed DNA polymerase, family A, palm domain; 5'-3' exonuclease, N-terminal; Helix-hairpin-helix motif, class 2; 3'-5' exonuclease YP_004794524.1 KEGG: sml:Smlt4590 hypothetical protein YP_004794525.1 PFAM: UspA; KEGG: smt:Smal_3943 UspA domain-containing protein YP_004794526.1 KEGG: sml:Smlt4592 hypothetical protein YP_004794527.1 KEGG: sml:Smlt4593 hypothetical protein YP_004794528.1 KEGG: sml:Smlt4594 hypothetical protein YP_004794529.1 KEGG: smt:Smal_3947 DNA-dependent helicase II; TIGRFAM: DNA helicase, ATP-dependent, UvrD type; PFAM: DNA helicase, UvrD/REP type YP_004794530.1 KEGG: smt:Smal_3948 hypothetical protein YP_004794531.1 KEGG: sml:Smlt4597 transmembrane cardiolipin synthetase; PFAM: Phospholipase D/Transphosphatidylase; SMART: Phospholipase D/Transphosphatidylase YP_004794533.1 KEGG: sml:Smlt4598 50S ribosomal protein L33; TIGRFAM: Ribosomal protein L33; PFAM: Ribosomal protein L33 YP_004794534.1 TIGRFAM: Ribosomal protein L28; HAMAP: Ribosomal protein L28; KEGG: smt:Smal_3951 50S ribosomal protein L28; PFAM: Ribosomal protein L28 YP_004794536.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: smt:Smal_3953 LysR family transcriptional regulator YP_004794537.1 PFAM: Endoribonuclease L-PSP; KEGG: sml:Smlt4604 endonuclease L-PSP family protein YP_004794538.1 KEGG: sml:Smlt4605 hypothetical protein YP_004794539.1 PFAM: Outer membrane efflux protein; KEGG: smt:Smal_3956 outer membrane efflux protein YP_004794540.1 KEGG: sml:Smlt4607 HlyD family secretion protein; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD YP_004794541.1 KEGG: sml:Smlt4608 transmembrane efflux pump protein; TIGRFAM: Heavy metal efflux pump CzcA; PFAM: Acriflavin resistance protein YP_004794542.1 PFAM: Protein of unknown function DUF885, bacterial; KEGG: sml:Smlt4609 hypothetical protein YP_004794543.1 PFAM: Lipid A biosynthesis, N-terminal; KEGG: smt:Smal_3961 lipid A biosynthesis domain-containing protein YP_004794544.1 PFAM: Glycosyl transferase, family 2; KEGG: sml:Smlt4611 glycosyl transferase YP_004794545.1 KEGG: sml:Smlt4612 UDP-glucuronic acid epimerase; PFAM: NAD-dependent epimerase/dehydratase YP_004794546.1 KEGG: sml:Smlt4613 hypothetical protein YP_004794547.1 TIGRFAM: ParB-like partition protein; PFAM: ParB-like nuclease; KEGG: sml:Smlt4614 chromosome partitioning protein; SMART: ParB-like nuclease YP_004794548.1 PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: sml:Smlt4615 chromosome partitioning protein YP_004794549.1 TIGRFAM: rRNA small subunit methyltransferase G; HAMAP: rRNA small subunit methyltransferase G; KEGG: sml:Smlt4616 16S rRNA methyltransferase GidB; PFAM: rRNA small subunit methyltransferase G YP_004794550.1 PFAM: 4'-phosphopantetheinyl transferase; KEGG: smt:Smal_3968 4'-phosphopantetheinyl transferase YP_004794551.1 PFAM: Transglycosylase-associated protein; KEGG: smt:Smal_3969 transglycosylase-associated protein YP_004794552.1 TIGRFAM: AP endonuclease, family 1; Exodeoxyribonuclease III xth; KEGG: smt:Smal_3970 exodeoxyribonuclease III; PFAM: Endonuclease/exonuclease/phosphatase YP_004794553.1 KEGG: sml:Smlt4620 coniferyl aldehyde dehydrogenase; PFAM: Aldehyde dehydrogenase YP_004794554.1 PFAM: General substrate transporter; KEGG: smt:Smal_3972 major facilitator superfamily protein YP_004794555.1 KEGG: sml:Smlt4622 hypothetical protein YP_004794556.1 PFAM: AMP-dependent synthetase/ligase; TIGRFAM: Acetate--CoA ligase; HAMAP: Acetyl-coenzyme A synthetase; KEGG: sml:Smlt4623 acetyl-CoA synthetase YP_004794557.1 KEGG: smt:Smal_3975 two component LuxR family transcriptional regulator; PFAM: Signal transduction response regulator, receiver region; Transcription regulator LuxR, C-terminal; SMART: Transcription regulator LuxR, C-terminal; Signal transduction response regulator, receiver region YP_004794558.1 KEGG: smt:Smal_3977 hypothetical protein; HAMAP: UPF0059 membrane protein yebN; PFAM: Protein of unknown function DUF204 YP_004794559.1 KEGG: sml:Smlt4627 transmembrane two component sensor histidine kinase / response regulator fusion protein; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; PAS fold-4; Sodium/solute symporter; Signal transduction response regulator, receiver region; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; PAS; Signal transduction response regulator, receiver region YP_004794560.1 PFAM: Peptidase S46; KEGG: sml:Smlt4628 hypothetical protein YP_004794561.1 PFAM: Heat shock protein 70; KEGG: sml:Smlt4629 chaperone heat shock HSP70 protein YP_004794562.1 PFAM: Heat shock protein DnaJ, N-terminal; KEGG: sml:Smlt4631 transmembrane chaperone heat shock protein YP_004794563.1 PFAM: Protein of unknown function DUF490; KEGG: sml:Smlt4632 hypothetical protein YP_004794564.1 PFAM: Bacterial surface antigen (D15); Surface antigen variable number; KEGG: sml:Smlt4633 surface antigen exported protein YP_004794565.1 TIGRFAM: Glycyl-tRNA synthetase, class IIc, beta subunit; HAMAP: Glycyl-tRNA synthetase beta subunit; KEGG: sml:Smlt4634 glycyl-tRNA synthetase subunit beta YP_004794566.1 PFAM: Glycyl-tRNA synthetase, class IIc, alpha subunit; TIGRFAM: Glycyl-tRNA synthetase, class IIc, alpha subunit; HAMAP: Glycyl-tRNA synthetase, class IIc, alpha subunit; KEGG: smt:Smal_3983 glycyl-tRNA synthetase subunit alpha YP_004794567.1 KEGG: smt:Smal_3984 type II secretion system protein E; PFAM: Type II secretion system protein E; General secretory system II, protein E, N-terminal; SMART: ATPase, AAA+ type, core YP_004794568.1 PFAM: Glutamine amidotransferase class-I, C-terminal; KEGG: sml:Smlt4637 glutamine amidotransferase YP_004794569.1 KEGG: sml:Smlt4638 transmembrane protein YP_004794570.1 KEGG: sml:Smlt4639 sec-independent protein translocase protein TatC; TIGRFAM: Twin arginine-targeting protein translocase, TatC; PFAM: Sec-independent periplasmic protein translocase YP_004794571.1 TIGRFAM: Twin-arginine translocation protein TatB; HAMAP: Twin-arginine translocation protein TatB; KEGG: sml:Smlt4640 sec-independent protein translocase protein TatB; PFAM: Bacterial sec-independent translocation protein mttA/Hcf106 YP_004794572.1 TIGRFAM: Twin-arginine translocation protein TatA/E; HAMAP: Twin-arginine translocation protein TatA/E; KEGG: smt:Smal_3989 twin arginine translocase protein A; PFAM: Bacterial sec-independent translocation protein mttA/Hcf106 YP_004794573.1 KEGG: sml:Smlt4642 hypothetical protein YP_004794574.1 PFAM: Ferrochelatase; TIGRFAM: Ferrochelatase; HAMAP: Ferrochelatase; KEGG: sml:Smlt4643 ferrochelatase YP_004794575.1 PFAM: Alpha/beta hydrolase fold-1; KEGG: sml:Smlt4644 alpha/beta fold hydrolase family protein YP_004794576.1 KEGG: sml:Smlt4645 transmembrane methyl-accepting chemotaxis protein I; PFAM: Chemotaxis methyl-accepting receptor, signalling; PAS fold; SMART: Chemotaxis methyl-accepting receptor, signalling YP_004794577.1 KEGG: smt:Smal_3994 benzoate transporter; TIGRFAM: Benzoate membrane transport protein; PFAM: Benzoate membrane transport protein YP_004794578.1 KEGG: smt:Smal_3995 hypothetical protein YP_004794579.1 KEGG: smt:Smal_3995 hypothetical protein YP_004794580.1 PFAM: Aldose 1-epimerase; KEGG: sml:Smlt4649 aldose-1-epimerase YP_004794581.1 KEGG: smt:Smal_3997 lytic murein transglycosylase; TIGRFAM: Lytic murein transglycosylase; PFAM: Peptidoglycan binding-like YP_004794582.1 KEGG: sml:Smlt4651 hypothetical protein; TIGRFAM: Methyltransferase-like; PFAM: Protein of unknown function DUF2260 YP_004794583.1 KEGG: smt:Smal_3999 hypothetical protein; TIGRFAM: Conserved hypothetical protein CHP03440; PFAM: Sulphatase-modifying factor YP_004794584.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate cyclase, predicted; KEGG: smt:Smal_4000 diguanylate cyclase; SMART: Diguanylate cyclase, predicted YP_004794585.1 KEGG: smt:Smal_4001 hypothetical protein; manually curated; HAMAP: UPF0225 protein ychJ YP_004794586.1 PFAM: Protein of unknown function DUF81; KEGG: sml:Smlt4655 transmembrane protein YP_004794587.1 KEGG: smt:Smal_4003 hypothetical protein YP_004794588.1 KEGG: smt:Smal_4004 hypothetical protein YP_004794589.1 KEGG: smt:Smal_4005 hypothetical protein YP_004794590.1 PFAM: GTP cyclohydrolase I/Nitrile oxidoreductase; TIGRFAM: GTP cyclohydrolase I; HAMAP: GTP cyclohydrolase I; KEGG: smt:Smal_4006 GTP cyclohydrolase I YP_004794591.1 KEGG: smt:Smal_4007 MarR family transcriptional regulator; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR YP_004794592.1 PFAM: Protein of unknown function DUF1656; KEGG: smt:Smal_4008 hypothetical protein YP_004794593.1 PFAM: Secretion protein HlyD; KEGG: smt:Smal_4009 secretion protein HlyD family protein YP_004794594.1 KEGG: smt:Smal_4010 NodT family RND efflux system outer membrane lipoprotein; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT; PFAM: Outer membrane efflux protein YP_004794595.1 PFAM: Fusaric acid resistance protein conserved region; KEGG: smt:Smal_4011 fusaric acid resistance protein YP_004794596.1 KEGG: smt:Smal_4012 hypothetical protein YP_004794597.1 TIGRFAM: Exodeoxyribonuclease V, alpha subunit; KEGG: smt:Smal_4013 exodeoxyribonuclease V subunit alpha; SMART: ATPase, AAA+ type, core YP_004794598.1 KEGG: smt:Smal_4014 exodeoxyribonuclease V subunit beta; TIGRFAM: Exodeoxyribonuclease V, beta subunit; PFAM: DNA helicase, UvrD/REP type YP_004794599.1 TIGRFAM: Exodeoxyribonuclease V, RecC subunit; KEGG: sml:Smlt4669 exodeoxyribonuclease V subunit gamma; PFAM: Exodeoxyribonuclease V, RecC subunit YP_004794600.1 PFAM: ABC transporter-like; KEGG: smt:Smal_4016 ABC transporter-like protein; SMART: ATPase, AAA+ type, core YP_004794601.1 KEGG: sml:Smlt4671 transmembrane component of ABC transporter protein; TIGRFAM: Protein of unknown function DUF140; PFAM: Protein of unknown function DUF140 YP_004794602.1 PFAM: Mammalian cell entry related; KEGG: sml:Smlt4672 transmembrane mce-like protein YP_004794603.1 PFAM: Toluene tolerance; KEGG: sml:Smlt4673 ABC transporter toluene tolerance exported protein YP_004794604.1 KEGG: smt:Smal_4020 hypothetical protein YP_004794605.1 PFAM: VacJ-like lipoprotein; KEGG: sml:Smlt4675 intercellular spreading VacJ lipoprotein YP_004794606.1 KEGG: smt:Smal_4022 glutathione peroxidase; PFAM: Glutathione peroxidase YP_004794607.1 KEGG: sml:Smlt4677 hypothetical protein YP_004794608.1 PFAM: RmuC; KEGG: maq:Maqu_2040 hypothetical protein YP_004794609.1 PFAM: Glutathione S-transferase, N-terminal; Glutathione S-transferase, C-terminal; KEGG: sml:Smlt4679 glutathione S-transferase protein YP_004794610.1 KEGG: sml:Smlt4680 dehydrogenase, zinc-containing; TIGRFAM: Alcohol dehydrogenase, zinc-binding type 1; PFAM: Alcohol dehydrogenase GroES-like; Alcohol dehydrogenase, zinc-binding YP_004794611.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: smt:Smal_4027 LysR family transcriptional regulator YP_004794612.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: smt:Smal_4028 lysine exporter protein LysE/YggA YP_004794613.1 KEGG: smt:Smal_4029 hypothetical protein YP_004794614.1 KEGG: sml:Smlt4684 hypothetical protein YP_004794615.1 PFAM: Amino acid permease-associated region; KEGG: sml:Smlt4685 amino-acid transporter transmembrane protein YP_004794616.1 KEGG: sml:Smlt4686 dipeptidase; PFAM: Peptidase M19, renal dipeptidase YP_004794617.1 KEGG: sml:Smlt4687 hypothetical protein; PFAM: Methyltransferase type 11; SMART: Pseudouridine synthase/archaeosine transglycosylase YP_004794618.1 KEGG: sml:Smlt4688 efflux membrane protein; TIGRFAM: integral membrane protein, TerC family; PFAM: Integral membrane protein TerC YP_004794619.1 PFAM: Peptidase S54, rhomboid; KEGG: sml:Smlt4689 rhomboid family transmembrane protein YP_004794620.1 PFAM: Glycerophosphoryl diester phosphodiesterase; KEGG: smt:Smal_4038 glycerophosphoryl diester phosphodiesterase YP_004794621.1 TIGRFAM: tRNA modification GTPase TrmE; Small GTP-binding protein; HAMAP: tRNA modification GTPase TrmE; KEGG: smt:Smal_4041 tRNA modification GTPase TrmE; PFAM: GTP-binding protein TrmE, N-terminal; GTP-binding protein, HSR1-related YP_004794622.1 KEGG: smt:Smal_4042 polysaccharide deacetylase; PFAM: Polysaccharide deacetylase; Peptidase C14, caspase catalytic; Tetratricopeptide TPR2; SMART: Tetratricopeptide repeat YP_004794623.1 TIGRFAM: Membrane insertion protein, OxaA/YidC, core; Membrane insertion protein, OxoA/YidC, N-terminal; HAMAP: Membrane protein oxaA; KEGG: smt:Smal_4043 inner membrane protein translocase component YidC; PFAM: Membrane insertion protein, OxaA/YidC YP_004794624.1 TIGRFAM: Ribonuclease P; HAMAP: Ribonuclease P; KEGG: sml:Smlt4694 ribonuclease P; PFAM: Ribonuclease P YP_004794625.1 KEGG: sml:Smlt4695 50S ribosomal protein L34; TIGRFAM: Ribosomal protein L34; PFAM: Ribosomal protein L34