-- dump date 20140620_075847 -- class Genbank::CDS -- table cds_note -- id note YP_187601.1 in Escherichia coli transcription of this gene is enhanced by polyamines YP_187602.1 protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus; this enzyme also cleaves other RNA substrates YP_187603.1 in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE YP_187604.1 GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs YP_187605.1 glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA YP_187606.1 identified by similarity to OMNI:SA2735; match to protein family HMM PF02195; match to protein family HMM TIGR00180 YP_187612.1 identified by match to protein family HMM PF01381 YP_187613.1 identified by similarity to OMNI:NTL01SA0199 YP_187614.1 identified by similarity to GP:14245964 YP_187615.1 identified by match to protein family HMM PF00005 YP_187616.1 identified by match to protein family HMM PF02687 YP_187618.1 identified by match to protein family HMM PF04650; match to protein family HMM TIGR01168 YP_187619.1 identified by similarity to OMNI:SA2726 YP_187620.1 identified by similarity to OMNI:NTL01BH0754; match to protein family HMM PF02687 YP_187621.1 identified by match to protein family HMM PF00005 YP_187624.1 identified by match to protein family HMM PF00461 YP_187625.1 identified by match to protein family HMM PF00083 YP_187626.1 identified by match to protein family HMM PF04650; match to protein family HMM TIGR01168 YP_187628.1 identified by similarity to OMNI:SA0421 YP_187629.1 identified by match to protein family HMM PF01381 YP_187630.1 identified by similarity to OMNI:NTL01SA2428 YP_187632.1 identified by match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930 YP_187633.1 identified by similarity to OMNI:SA0427; match to protein family HMM PF04199 YP_187634.1 catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine to form methionine YP_187635.1 catalyzes the formation of 5,10-methylenetetrahydrofolate from 5-methyltetrahydrofolate and S-adenosyl-L-homocysteine and methionine from S-adenosyl-L-methionine and L-homocysteine; expressed in B. subtilis under methionine starvation conditions YP_187636.1 identified by match to protein family HMM PF01053 YP_187637.1 identified by match to protein family HMM PF01053 YP_187638.1 identified by similarity to EGAD:13122; match to protein family HMM PF02195; match to protein family HMM TIGR00180 YP_187639.1 identified by similarity to OMNI:SA0433; match to protein family HMM PF00924 YP_187640.1 identified by similarity to OMNI:NTL01SA0362 YP_187641.1 translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1 YP_187642.1 identified by similarity to OMNI:NTL01SA0364 YP_187644.1 binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21 YP_187645.1 identified by similarity to EGAD:17778; match to protein family HMM PF00436; match to protein family HMM TIGR00621 YP_187646.1 binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit YP_187648.1 identified by similarity to OMNI:SA0446; match to protein family HMM PF04226 YP_187650.1 identified by match to protein family HMM PF01810 YP_187651.1 identified by match to protein family HMM PF00300 YP_187652.1 identified by similarity to OMNI:NTL01SA0377 YP_187655.1 identified by similarity to OMNI:SA0449 YP_187657.1 identified by similarity to EGAD:30995; match to protein family HMM PF00070 YP_187658.1 identified by similarity to EGAD:37649; match to protein family HMM PF00578 YP_187659.1 identified by match to protein family HMM PF01689 YP_187660.1 identified by similarity to EGAD:18715; match to protein family HMM PF00881 YP_187661.1 identified by match to protein family HMM PF00375 YP_187662.1 identified by similarity to OMNI:SA0455 YP_187663.1 identified by similarity to OMNI:SA0456 YP_187664.1 identified by similarity to OMNI:SA0457 YP_187665.1 Catalyzes the transfer of the phosphoribosyl moiety from 5-phospho--D-ribosyl-1-pyrophosphate (PRib-PP) to the 6-oxo-guanine and -xanthine YP_187666.1 identified by similarity to EGAD:30678; match to protein family HMM PF00860; match to protein family HMM TIGR00801 YP_187667.1 identified by match to protein family HMM PF00478; match to protein family HMM PF00571; match to protein family HMM PF01574; match to protein family HMM TIGR01302 YP_187668.1 contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway YP_187669.1 identified by similarity to OMNI:SA0440 YP_187670.1 identified by similarity to GP:14247774 YP_187673.1 identified by similarity to OMNI:SA0071 YP_187674.1 identified by similarity to GP:8918792 YP_187675.1 identified by similarity to EGAD:33437 YP_187676.1 identified by similarity to OMNI:NTL03PA01359; match to protein family HMM PF00903 YP_187677.1 identified by match to protein family HMM PF02492 YP_187681.1 Catalyzes the transfer of electrons from NADH to ubiquinone YP_187682.1 identified by similarity to OMNI:NTL01SA0430 YP_187684.1 identified by similarity to OMNI:NTL01SA0431 YP_187685.1 identified by similarity to OMNI:SA0497 YP_187686.1 identified by match to protein family HMM PF01569 YP_187687.1 identified by similarity to EGAD:18058 YP_187689.1 identified by match to protein family HMM PF00209 YP_187690.1 identified by similarity to EGAD:162731 YP_187691.1 identified by match to protein family HMM PF00291 YP_187692.1 identified by match to protein family HMM PF01053 YP_187694.1 identified by match to protein family HMM PF00005 YP_187695.1 identified by match to protein family HMM PF00528 YP_187696.1 identified by match to protein family HMM PF03180 YP_187697.1 identified by match to protein family HMM PF01476; match to protein family HMM PF05257 YP_187698.1 identified by match to protein family HMM PF00534 YP_187699.1 identified by similarity to OMNI:NTL01SA0442 YP_187700.1 identified by match to protein family HMM PF00293 YP_187702.1 identified by similarity to OMNI:SA0511 YP_187703.1 identified by similarity to OMNI:SA0512 YP_187704.1 identified by similarity to EGAD:6257; match to protein family HMM PF00126 YP_187705.1 glutamate synthase is composed of subunits alpha and beta; beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate YP_187706.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_187707.1 identified by match to protein family HMM PF03601 YP_187708.1 identified by similarity to OMNI:NTL01SA0452 YP_187709.1 identified by match to protein family HMM PF00583 YP_187710.1 identified by similarity to SP:P09122; match to protein family HMM PF00004 YP_187711.1 identified by match to protein family HMM PF02575; match to protein family HMM TIGR00103 YP_187712.1 involved in a recombinational process of DNA repair, independent of the recBC complex YP_187713.1 identified by similarity to OMNI:SA1097 YP_187714.1 identified by match to protein family HMM PF00583 YP_187715.1 identified by match to protein family HMM PF01276 YP_187716.1 catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP) YP_187717.1 identified by similarity to OMNI:SA0525 YP_187718.1 identified by similarity to EGAD:13071 YP_187719.1 identified by similarity to OMNI:SA0527; match to protein family HMM PF04468 YP_187720.1 in Bacillus subtilis this protein is involved in the negative regulation of DNA replication initiation; interacts with DnaN and DnaA YP_187721.1 identified by similarity to OMNI:SA0529 YP_187722.1 identified by similarity to OMNI:SA0530; match to protein family HMM PF01541 YP_187723.1 identified by match to protein family HMM PF00590; match to protein family HMM TIGR00096 YP_187724.1 methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content YP_187725.1 identified by match to protein family HMM PF01026; match to protein family HMM TIGR00010 YP_187726.1 identified by match to protein family HMM PF01751; match to protein family HMM TIGR00334 YP_187727.1 catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin YP_187728.1 identified by similarity to OMNI:SA0537 YP_187729.1 An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis YP_187730.1 identified by similarity to EGAD:16043; match to protein family HMM PF00156; match to protein family HMM TIGR01743 YP_187731.1 identified by match to protein family HMM PF01042; match to protein family HMM TIGR00004 YP_187732.1 stage V sporulation protein G; essential for spore formation and a negative regulator of asymmetric septation in Bacillus; involved in methicillin-resistance, biofilm formation and capsular polysaccharide synthesis in Staphylococcus YP_187733.1 forms a homotrimer; catalyzes the acetylation of glucosamine-1-phosphate and uridylation of N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc; function in cell wall synthesis YP_187734.1 catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP YP_187735.1 the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response YP_187736.1 Enables the recycling of peptidyl-tRNAs produced at termination of translation YP_187737.1 identified by similarity to EGAD:14131; match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF02559; match to protein family HMM PF03461; match to protein family HMM TIGR00580 YP_187738.1 identified by match to protein family HMM PF01943 YP_187739.1 identified by match to protein family HMM PF00590; match to protein family HMM PF03819 YP_187740.1 identified by match to protein family HMM PF01479 YP_187741.1 identified by match to protein family HMM PF04977 YP_187742.1 identified by similarity to SP:P05055; match to protein family HMM PF00575 YP_187744.1 identified by similarity to EGAD:18381; match to protein family HMM PF01171 YP_187745.1 identified by similarity to EGAD:18056; match to protein family HMM PF00156; match to protein family HMM TIGR01203 YP_187746.1 identified by similarity to EGAD:18839; match to protein family HMM PF00004; match to protein family HMM PF01434; match to protein family HMM TIGR01241 YP_187747.1 becomes active under oxidative stress; four conserved cysteines bind a zinc atom when they are in the reduced state and the enzyme is inactive; oxidative stress results in oxidized cysteines, release of zinc, and binding of Hsp33 to aggregation-prone proteins; forms dimers and higher order oligomers YP_187748.1 identified by similarity to SP:P37887; match to protein family HMM PF00291; match to protein family HMM TIGR01136; match to protein family HMM TIGR01139 YP_187749.1 identified by similarity to EGAD:40403; match to protein family HMM PF00809; match to protein family HMM TIGR01496 YP_187750.1 identified by similarity to SP:P56740; match to protein family HMM PF02152; match to protein family HMM TIGR00525; match to protein family HMM TIGR00526 YP_187751.1 identified by similarity to EGAD:18680; match to protein family HMM PF01288; match to protein family HMM TIGR01498 YP_187752.1 class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1 YP_187753.1 identified by match to protein family HMM PF00392 YP_187754.1 with PdxT forms pyridoxal 5'-phosphate from glutamine, either ribose 5-phosphate or ribulose 5-phosphate, and either glyceraldehyde 3-phosphate or dihydroxyacetone phosphate YP_187755.1 with PdxST is involved in the biosynthesis of pyridoxal 5'-phosphate; PdxT catalyzes the hydrolysis of glutamine to glutamate and ammonia; PdxS utilizes the ammonia to synthesize pyridoxal 5'-phosphate YP_187756.1 RTD; identified by match to protein family HMM PF02371 YP_187757.1 identified by similarity to EGAD:30360; match to protein family HMM PF01773 YP_187758.1 identified by match to protein family HMM PF05848 YP_187759.1 identified by match to protein family HMM PF02151 YP_187760.1 identified by match to protein family HMM PF00217 YP_187761.1 identified by similarity to EGAD:18028; match to protein family HMM PF00004; match to protein family HMM PF02151; match to protein family HMM PF02861 YP_187762.1 Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents YP_187763.1 identified by similarity to OMNI:SA0573; match to protein family HMM PF01850; match to protein family HMM PF01938 YP_187764.1 Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation YP_187765.1 identified by match to protein family HMM PF00132; match to protein family HMM TIGR01172 YP_187766.1 catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA YP_187767.1 identified by similarity to GP:14246298 YP_187768.1 identified by match to protein family HMM PF00588; match to protein family HMM TIGR00186 YP_187769.1 identified by similarity to OMNI:SA0579 YP_187770.1 identified by similarity to EGAD:108360; match to protein family HMM PF04542 YP_187771.1 in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group have the CXXC motif YP_187772.1 forms a complex with SecY and SecG; SecYEG forms a protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force YP_187773.1 identified by similarity to EGAD:9622; match to protein family HMM PF00467; match to protein family HMM PF02357; match to protein family HMM TIGR00922 YP_187774.1 binds directly to 23S ribosomal RNA YP_187775.1 in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA YP_187776.1 binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit YP_187777.1 present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors YP_187778.1 identified by similarity to EGAD:35187; match to protein family HMM PF05175 YP_187779.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme YP_187780.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter YP_187781.1 in Bacillus subtilis this non-essential protein associates with the ribosome YP_187782.1 interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance YP_187783.1 binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit YP_187784.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene YP_187785.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu YP_187786.1 identified by match to protein family HMM PF01546; match to protein family HMM TIGR01891 YP_187787.1 identified by match to protein family HMM PF00583 YP_187788.1 catalyzes the formation of L-proline from L-ornithine YP_187790.1 identified by similarity to EGAD:99035 YP_187791.1 catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids YP_187792.1 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT; catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; forms homodimers YP_187793.1 identified by match to protein family HMM PF00107 YP_187794.1 identified by match to protein family HMM PF04464 YP_187795.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549 YP_187796.1 identified by similarity to EGAD:45955; similarity to GP:12543558 YP_187797.1 Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis YP_187798.1 identified by match to protein family HMM PF01712 YP_187799.1 identified by match to protein family HMM PF01712 YP_187800.1 identified by match to protein family HMM PF00383 YP_187801.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR00099; match to protein family HMM TIGR01483; match to protein family HMM TIGR01484 YP_187802.1 identified by similarity to GP:10281002; match to protein family HMM PF03358 YP_187803.1 Point mutation observed 38 residues upstream of the start, causing translation to begin at the Leu.; identified by similarity to GP:8101007; match to protein family HMM PF00746; match to protein family HMM PF05738; match to protein family HMM TIGR01167 YP_187804.1 identified by match to protein family HMM PF00534 YP_187805.1 catalyzes the reduction of arsenate to arsenite; also can dephosphorylate tyrosine phosphorylated proteins, aryl phosphates, and acyl phosphates YP_187806.1 identified by match to protein family HMM PF02040; match to protein family HMM TIGR00935 YP_187807.1 identified by similarity to EGAD:10168; match to protein family HMM PF01022 YP_187808.1 similar protein in Methanocaldococcus converts GTP to 7,8-dihydro-D-neopterin 2',3'-cyclic phosphate as the first step in methanopterin biosynthesis YP_187809.1 identified by similarity to OMNI:NTL01SA0544; match to protein family HMM PF02585 YP_187810.1 identified by similarity to OMNI:NTL01SA0545 YP_187811.1 identified by similarity to EGAD:107403; match to protein family HMM PF01182 YP_187812.1 identified by match to protein family HMM PF00215 YP_187813.1 identified by match to protein family HMM PF01380 YP_187814.1 identified by match to protein family HMM PF00702 YP_187815.1 identified by match to protein family HMM PF00501 YP_187816.1 identified by match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930 YP_187817.1 identified by similarity to OMNI:SA0623 YP_187818.1 identified by similarity to OMNI:SA0624 YP_187819.1 identified by match to protein family HMM PF00083 YP_187820.1 identified by similarity to OMNI:SA0625 YP_187821.1 identified by similarity to GP:8918792 YP_187822.1 identified by similarity to EGAD:21177; match to protein family HMM TIGR00097 YP_187823.1 identified by similarity to EGAD:17563; match to protein family HMM PF02275 YP_187824.1 Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine YP_187825.1 identified by similarity to OMNI:SA0628 YP_187826.1 identified by similarity to OMNI:SA0629; match to protein family HMM PF04241 YP_187828.1 identified by match to protein family HMM PF00324 YP_187829.1 identified by similarity to OMNI:SA0631 YP_187831.1 identified by similarity to OMNI:NTL01SA0564 YP_187832.1 in Salmonella this enzyme is required for ethanolamine catabolism; has higher affinity for CoA than Pta YP_187833.1 identified by match to protein family HMM PF02539; match to protein family HMM PF03099 YP_187834.1 identified by match to protein family HMM PF00288; match to protein family HMM TIGR00549 YP_187835.1 identified by match to protein family HMM PF00288; match to protein family HMM TIGR01240 YP_187836.1 identified by match to protein family HMM PF00288; match to protein family HMM TIGR01220 YP_187837.1 identified by similarity to OMNI:SA0639 YP_187838.1 identified by match to protein family HMM PF00070; match to protein family HMM PF02852 YP_187839.1 identified by similarity to GP:14246363 YP_187840.1 identified by match to protein family HMM PF00248 YP_187841.1 identified by match to protein family HMM PF03176 YP_187842.1 identified by match to protein family HMM PF04069 YP_187845.1 identified by similarity to OMNI:SA0028; match to protein family HMM PF00665 YP_187846.1 identified by match to protein family HMM PF00583 YP_187847.1 identified by match to protein family HMM PF01966 YP_187848.1 identified by similarity to OMNI:NTL01SA0581 YP_187849.1 identified by similarity to EGAD:165191; match to protein family HMM PF01969 YP_187851.1 identified by similarity to EGAD:49939; match to protein family HMM TIGR00268 YP_187853.1 similar to zinc-dependent eukaryotic ADH enzymes and distinct from fermentative ADHs YP_187856.1 RTD; identified by match to protein family HMM PF02371 YP_187857.1 identified by similarity to OMNI:NTL01SA0583 YP_187858.1 catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase YP_187859.1 identified by match to protein family HMM PF00730 YP_187860.1 identified by match to protein family HMM PF00376 YP_187862.1 identified by match to protein family HMM PF01497 YP_187863.1 identified by match to protein family HMM PF01032 YP_187864.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; match to protein family HMM TIGR01549 YP_187865.1 identified by match to protein family HMM PF00561 YP_187866.1 identified by similarity to OMNI:SA0669 YP_187868.1 identified by similarity to OMNI:SA0670 YP_187869.1 identified by match to protein family HMM PF00561 YP_187870.1 identified by similarity to EGAD:42500; match to protein family HMM TIGR01889 YP_187871.1 identified by similarity to GP:2879913 YP_187872.1 identified by similarity to OMNI:NTL01SA0594; match to protein family HMM PF04657 YP_187875.1 identified by similarity to OMNI:SA0676 YP_187876.1 identified by similarity to OMNI:NTL01SA0596 YP_187877.1 subunit A of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali YP_187878.1 subunit B of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali YP_187879.1 subunit C of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali YP_187880.1 subunit D of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; contains an oxidoreductase domain; catalyzes the transfer of electrons from NADH to ubiquinone; in S. meliloti it is known to be involved specifically with K+ transport YP_187881.1 subunit E of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved specifically with K+ transport YP_187882.1 subunit F of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali YP_187883.1 subunit G of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali YP_187885.1 identified by match to protein family HMM PF00999 YP_187886.1 identified by similarity to GP:1617430; match to protein family HMM PF01297 YP_187887.1 identified by match to protein family HMM PF00950 YP_187888.1 identified by similarity to GP:1617428; match to protein family HMM PF00005 YP_187889.1 identified by similarity to GP:1617434; match to protein family HMM PF01325; match to protein family HMM PF02742 YP_187890.1 identified by similarity to OMNI:NTL01SA0611 YP_187891.1 identified by similarity to EGAD:19699; match to protein family HMM PF03808; match to protein family HMM TIGR00696 YP_187892.1 with TagG is involved in the export of teichoic acids YP_187893.1 identified by similarity to EGAD:30975; match to protein family HMM PF01061 YP_187894.1 identified by match to protein family HMM PF04464 YP_187895.1 identified by match to protein family HMM PF00535 YP_187896.1 identified by similarity to EGAD:16695; match to protein family HMM PF01467; match to protein family HMM TIGR00125; match to protein family HMM TIGR01518 YP_187899.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_187900.1 identified by match to protein family HMM PF01773 YP_187901.1 identified by similarity to OMNI:NTL01SPL1683; match to protein family HMM PF02588 YP_187902.1 identified by similarity to EGAD:37683; match to protein family HMM PF00005 YP_187903.1 identified by similarity to OMNI:SA0710 YP_187904.1 identified by similarity to OMNI:NTL01SA0630 YP_187906.1 identified by match to protein family HMM PF00583 YP_187907.1 identified by similarity to OMNI:SA0715 YP_187908.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_187909.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_187910.1 identified by match to protein family HMM PF00005 YP_187911.1 identified by match to protein family HMM PF02687 YP_187912.1 identified by similarity to OMNI:SA0721; match to protein family HMM PF01865 YP_187913.1 identified by match to protein family HMM PF01384 YP_187914.1 identified by match to protein family HMM PF01476; match to protein family HMM PF05257 YP_187915.1 identified by similarity to OMNI:SA0724 YP_187916.1 identified by match to protein family HMM PF00165 YP_187917.1 identified by match to protein family HMM TIGR01889 YP_187918.1 identified by similarity to OMNI:SA0727; match to protein family HMM PF01709; match to protein family HMM TIGR01033 YP_187919.1 identified by similarity to GP:13122144 YP_187920.1 involved in peptidoglycan cross-linking YP_187921.1 identified by match to protein family HMM PF00042; match to protein family HMM PF00970 YP_187923.1 identified by similarity to OMNI:NTL01SA0647; match to protein family HMM PF04167 YP_187924.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_187925.1 identified by similarity to EGAD:6822; similarity to EGAD:7093; similarity to EGAD:19549 YP_187926.1 identified by similarity to OMNI:SA0734; match to protein family HMM PF04306 YP_187927.1 identified by similarity to OMNI:SA0735 YP_187929.1 identified by similarity to OMNI:SA0738 YP_187930.1 identified by match to protein family HMM PF00583 YP_187931.1 identified by similarity to OMNI:SA0740; match to protein family HMM PF03641; match to protein family HMM TIGR00730 YP_187932.1 identified by similarity to OMNI:NTL01SA0657; match to protein family HMM PF02639 YP_187933.1 identified by similarity to OMNI:SA0742 YP_187934.1 identified by similarity to OMNI:NTL01BH0402 YP_187935.1 BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell YP_187936.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_187937.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_187938.1 identified by match to protein family HMM PF01047 YP_187940.1 identified by match to protein family HMM PF02492 YP_187943.1 Catalyzes the reversible oxidation of malate to oxaloacetate YP_187944.1 identified by match to protein family HMM PF00939; match to protein family HMM TIGR00785 YP_187945.1 identified by match to protein family HMM PF03441 YP_187947.1 identified by similarity to OMNI:NTL01SA0669 YP_187949.1 identified by similarity to EGAD:18536; match to protein family HMM PF00083 YP_187951.1 identified by match to protein family HMM PF04073 YP_187953.1 identified by match to protein family HMM PF00455 YP_187954.1 identified by similarity to EGAD:107874; match to protein family HMM PF00294 YP_187955.1 identified by similarity to GP:9501781; match to protein family HMM PF00359; match to protein family HMM PF02378; match to protein family HMM PF02379; match to protein family HMM TIGR00829; match to protein family HMM TIGR00848; match to protein family HMM TIGR01427 YP_187956.1 identified by similarity to EGAD:107401; match to protein family HMM PF01979; match to protein family HMM TIGR00221 YP_187957.1 identified by match to protein family HMM PF00571; match to protein family HMM PF01595; match to protein family HMM PF03471 YP_187958.1 identified by match to protein family HMM PF00248 YP_187959.1 identified by match to protein family HMM PF00535 YP_187960.1 identified by similarity to GP:5726301; match to protein family HMM PF00512; match to protein family HMM PF02518 YP_187961.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_187962.1 identified by similarity to OMNI:NTL01BH2256 YP_187965.1 identified by similarity to GP:8918792 YP_187967.1 identified by similarity to GP:2808502; match to protein family HMM PF04055 YP_187968.1 identified by match to protein family HMM PF01242 YP_187969.1 identified by match to protein family HMM TIGR00364 YP_187970.1 identified by similarity to EGAD:15630; match to protein family HMM PF00117; match to protein family HMM TIGR00566 YP_187972.1 identified by match to protein family HMM PF02626 YP_187973.1 identified by match to protein family HMM PF00884 YP_187974.1 RTD; identified by match to protein family HMM PF02371 YP_187976.1 identified by match to protein family HMM PF02535 YP_187977.1 identified by match to protein family HMM PF00005 YP_187978.1 identified by similarity to OMNI:NTL01LL1848; match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF00570; match to protein family HMM TIGR00614; match to protein family HMM TIGR01389 YP_187979.1 identified by match to protein family HMM PF00005 YP_187980.1 identified by match to protein family HMM PF00528; match to protein family HMM PF04069 YP_187981.1 catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis YP_187982.1 identified by similarity to OMNI:NTL01SA0701 YP_187983.1 identified by similarity to SP:P17547; match to protein family HMM PF00171; match to protein family HMM PF00465 YP_187984.1 identified by similarity to EGAD:20823; match to protein family HMM TIGR00147 YP_187985.1 identified by similarity to EGAD:9223; match to protein family HMM PF00854; match to protein family HMM TIGR00924 YP_187987.1 NADPH-dependent; catalyzes the reduction of 7-cyano-7-deazaguanine to 7-aminomethyl-7-deazaguanine in queuosine biosynthesis YP_187988.1 identified by match to protein family HMM PF00892 YP_187989.1 in Salmonella NrdI has a stimulatory effect on the ribonucleotide reductase activity of NrdH with NrdEF YP_187990.1 Catalyzes the rate-limiting step in dNTP synthesis YP_187991.1 B2 or R2 protein; type 1b enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdE YP_187993.1 identified by match to protein family HMM PF01032 YP_187994.1 identified by similarity to EGAD:10563; match to protein family HMM PF01032 YP_187995.1 identified by similarity to EGAD:37683; match to protein family HMM PF00005 YP_187996.1 identified by match to protein family HMM PF01497 YP_187997.1 identified by similarity to OMNI:SA0800; match to protein family HMM PF05495 YP_187998.1 catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis YP_187999.1 identified by similarity to OMNI:SA0802; match to protein family HMM PF04229 YP_188001.1 identified by similarity to OMNI:SA0804 YP_188002.1 identified by similarity to OMNI:NTL01SA0718; match to protein family HMM PF02595; match to protein family HMM TIGR00045 YP_188003.1 catalyzes the release of the N-terminal amino acid from a tripeptide YP_188004.1 identified by similarity to OMNI:SA0807 YP_188006.1 identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_188007.1 Possible involvement in methicillin resistance; identified by similarity to EGAD:23076; match to protein family HMM PF00953 YP_188008.1 identified by similarity to OMNI:SA0811; match to protein family HMM PF01205; match to protein family HMM TIGR00257 YP_188009.1 identified by match to protein family HMM PF02645; match to protein family HMM TIGR00762 YP_188010.1 identified by similarity to EGAD:24480; match to protein family HMM PF00271 YP_188012.1 identified by match to protein family HMM PF02482; match to protein family HMM TIGR00741 YP_188013.1 functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins YP_188014.1 identified by match to protein family HMM PF00472; match to protein family HMM PF03462; match to protein family HMM TIGR00020; programmed frameshift YP_188015.1 identified by match to protein family HMM PF01476; match to protein family HMM PF05257 YP_188017.1 identified by similarity to EGAD:12337 YP_188019.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion YP_188020.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate YP_188021.1 catalyzes the phosphorylation of the phosphocarrier protein HPr of the bacterial phosphotransferase system YP_188022.1 transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein YP_188023.1 identified by match to protein family HMM PF00132 YP_188024.1 identified by similarity to GP:5690062; match to protein family HMM PF00515 YP_188025.1 identified by similarity to SP:P80880; match to protein family HMM PF00070; match to protein family HMM TIGR01292 YP_188026.1 identified by similarity to OMNI:SA0830; match to protein family HMM PF03668 YP_188027.1 identified by similarity to OMNI:SA0831; match to protein family HMM PF01933; match to protein family HMM TIGR01826 YP_188028.1 identified by similarity to OMNI:SA0832; match to protein family HMM PF02650; match to protein family HMM TIGR00647 YP_188029.1 hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates YP_188031.1 identified by match to protein family HMM TIGR01777 YP_188034.1 identified by similarity to OMNI:SA0837; match to protein family HMM PF04198 YP_188035.1 identified by similarity to EGAD:22254; match to protein family HMM PF00044; match to protein family HMM PF02800; match to protein family HMM TIGR01534 YP_188036.1 Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway YP_188037.1 Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate YP_188038.1 catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate YP_188039.1 enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis YP_188041.1 identified by match to protein family HMM PF03840; match to protein family HMM TIGR00810 YP_188042.1 identified by similarity to EGAD:18058 YP_188043.1 identified by match to protein family HMM PF00575; match to protein family HMM PF00773; match to protein family HMM TIGR00358 YP_188044.1 binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation YP_188050.1 identified by match to protein family HMM PF02386 YP_188052.1 identified by similarity to OMNI:NTL02ML4319 YP_188055.1 identified by similarity to OMNI:NTL01SA0184 YP_188057.1 identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297 YP_188058.1 identified by match to protein family HMM PF00313 YP_188059.1 identified by similarity to OMNI:SA0862 YP_188060.1 identified by similarity to GP:14246587 YP_188061.1 identified by similarity to EGAD:108826 YP_188063.1 identified by similarity to OMNI:NTL01SA0772 YP_188064.1 identified by similarity to OMNI:NTL01SA0773 YP_188066.1 identified by similarity to OMNI:NTL01SA0775 YP_188067.1 identified by similarity to OMNI:NTL01SA0776 YP_188068.1 identified by match to protein family HMM PF00300 YP_188069.1 identified by match to protein family HMM PF00583 YP_188070.1 identified by similarity to GP:8918792 YP_188071.1 identified by similarity to OMNI:SA0036 YP_188072.1 identified by match to protein family HMM PF02566 YP_188073.1 catalyzes the dehydration of 3-dehydroquinate to form 3-dehydroshikimate in aromatic amino acid biosynthesis YP_188074.1 identified by match to protein family HMM PF00881 YP_188075.1 identified by match to protein family HMM PF00085 YP_188076.1 identified by match to protein family HMM PF03960; match to protein family HMM TIGR01617 YP_188077.1 part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor YP_188079.1 identified by match to protein family HMM PF01751 YP_188081.1 identified by match to protein family HMM PF00005 YP_188082.1 identified by match to protein family HMM PF00528 YP_188083.1 identified by match to protein family HMM PF03180 YP_188086.1 identified by similarity to OMNI:SA0912; match to protein family HMM PF05532 YP_188087.1 identified by similarity to OMNI:NTL01SA0801; match to protein family HMM PF04018 YP_188088.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR01978 YP_188089.1 identified by similarity to OMNI:NTL01SA0803; match to protein family HMM PF01458; match to protein family HMM TIGR01981 YP_188090.1 identified by match to protein family HMM PF00266; match to protein family HMM TIGR01979 YP_188091.1 identified by match to protein family HMM PF01592 YP_188092.1 identified by similarity to OMNI:SA0918; match to protein family HMM PF01458; match to protein family HMM TIGR01980 YP_188095.1 identified by similarity to OMNI:SA0285 YP_188096.1 identified by similarity to OMNI:SA0299 YP_188097.1 identified by similarity to OMNI:NTL01SA0304 YP_188099.1 identified by match to protein family HMM PF00571; match to protein family HMM PF01595 YP_188100.1 identified by similarity to OMNI:SA0924; match to protein family HMM PF01904 YP_188101.1 identified by similarity to OMNI:SA0925; match to protein family HMM PF01925 YP_188102.1 identified by match to protein family HMM PF00149; match to protein family HMM PF01009 YP_188103.1 catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group YP_188104.1 identified by similarity to GP:14246694 YP_188105.1 identified by similarity to OMNI:NTL01SA0816 YP_188106.1 identified by similarity to OMNI:NTL01SA0817; match to protein family HMM PF01934 YP_188107.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01457; match to protein family HMM TIGR01460 YP_188108.1 identified by match to protein family HMM PF00389; match to protein family HMM PF02826 YP_188109.1 identified by similarity to OMNI:NTL01SA0820 YP_188110.1 transfers D-alanine to the D-alanyl carrier protein during the incorporation of D-alanine into lipoteichoic acid YP_188111.1 identified by similarity to EGAD:22430; match to protein family HMM PF03062 YP_188112.1 D-alanyl carrier protein subunit; involved in the incorporation of D-alanine into membrane-associated D-alanyl-lipoteichoic acid; D-alanyl carrier protein is the acceptor of activated D-alanine which it donates to a membrane acceptor(D-alanyl transferase) for incorporation into membrane lipoteichoic acid YP_188113.1 identified by match to protein family HMM PF04914; match to protein family HMM PF04915; match to protein family HMM PF04918 YP_188114.1 identified by match to protein family HMM PF01106 YP_188115.1 identified by similarity to OMNI:NTL01SA0826 YP_188116.1 identified by similarity to SP:P00393; match to protein family HMM PF00070 YP_188117.1 identified by similarity to OMNI:SA0942 YP_188118.1 identified by match to protein family HMM PF01521; match to protein family HMM TIGR00049 YP_188119.1 identified by match to protein family HMM PF00070 YP_188120.1 identified by match to protein family HMM PF00883 YP_188121.1 identified by match to protein family HMM PF03553 YP_188122.1 identified by match to protein family HMM PF03061; match to protein family HMM TIGR00369 YP_188123.1 identified by similarity to OMNI:NTL01SA0834 YP_188124.1 subunit G of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali YP_188125.1 subunit F of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali YP_188126.1 subunit E of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali YP_188127.1 subunit D of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; contains an oxidoreductase domain; catalyzes the transfer of electrons from NADH to ubiquinone YP_188128.1 subunit C of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali YP_188129.1 subunit B of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in the case of S. meliloti it was proved to be involved specifically with K+ transport YP_188130.1 subunit A of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali YP_188132.1 identified by match to protein family HMM PF00160 YP_188133.1 identified by similarity to SP:P80870; match to protein family HMM PF00575 YP_188134.1 identified by similarity to EGAD:45866; match to protein family HMM PF00724 YP_188135.1 RTD; identified by match to protein family HMM PF02371 YP_188136.1 identified by similarity to EGAD:21835; match to protein family HMM PF00202; match to protein family HMM TIGR01885 YP_188137.1 identified by similarity to EGAD:20751; match to protein family HMM PF00208; match to protein family HMM PF02812 YP_188138.1 identified by similarity to EGAD:9350; match to protein family HMM PF03009 YP_188139.1 catalyzes the formation of arginine from (N-L-arginino)succinate YP_188140.1 catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming YP_188141.1 functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family YP_188142.1 identified by similarity to OMNI:NTL01SA0852 YP_188143.1 identified by similarity to SP:P72364; match to protein family HMM PF00461 YP_188144.1 identified by similarity to SP:P72365; match to protein family HMM PF00461 YP_188145.1 identified by similarity to EGAD:12281 YP_188146.1 identified by similarity to EGAD:18428; match to protein family HMM PF00580 YP_188147.1 identified by match to protein family HMM PF01557 YP_188148.1 identified by similarity to OMNI:NTL01SA0858 YP_188149.1 RTD; identified by match to protein family HMM PF02371 YP_188150.1 identified by similarity to GP:8918792 YP_188151.1 NADPH-dependent; catalyzes the reduction of coenzyme A disulfide YP_188152.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR00099; match to protein family HMM TIGR01483; match to protein family HMM TIGR01484 YP_188153.1 identified by match to protein family HMM PF01883 YP_188154.1 identified by match to protein family HMM PF01757 YP_188155.1 identified by similarity to EGAD:20010; match to protein family HMM PF00004; match to protein family HMM PF02861 YP_188156.1 RTD; identified by match to protein family HMM PF02371 YP_188157.1 identified by similarity to OMNI:SA0986 YP_188158.1 FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs YP_188159.1 identified by similarity to SP:P39435; match to protein family HMM PF00109; match to protein family HMM PF02801 YP_188161.1 identified by similarity to EGAD:8134; match to protein family HMM PF00528 YP_188162.1 identified by similarity to GP:10717145; match to protein family HMM PF00528 YP_188163.1 identified by similarity to EGAD:24096; match to protein family HMM PF00005; match to protein family HMM TIGR01727 YP_188164.1 identified by similarity to SP:P24137; match to protein family HMM PF00005 YP_188165.1 identified by similarity to GP:10717143; match to protein family HMM PF00496 YP_188166.1 catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_188167.1 the anti-alpha factor Spx interacts with RNA polymerase alpha subunit C-terminal domain in a region that interacts with the sigma 70 subunit and may interfere with activation of promoters; in Bacillus subtilis this protein is a substrate for ClpXP protease; blocks transcription of the competence regulatory gene encoded by the srf operon; regulates a number of genes involved in thiol homeostasis including trxA and trxB; monomeric member of ArsC family of proteins; does not bind DNA; contains a disulfide bond between C10 and C13 which may sense disulfide stress YP_188168.1 RTD; identified by match to protein family HMM PF02371 YP_188169.1 enables recognition and targeting of proteins for proteolysis, involved in negative regulation of competence YP_188170.1 identified by similarity to OMNI:SA1004 YP_188171.1 identified by similarity to EGAD:13184; match to protein family HMM PF01432; match to protein family HMM TIGR00181 YP_188172.1 identified by similarity to OMNI:SA1006 YP_188173.1 identified by match to protein family HMM PF01152 YP_188174.1 identified by similarity to OMNI:NTL01SA0892; match to protein family HMM PF01928 YP_188176.1 identified by similarity to OMNI:NTL01SA0893 YP_188177.1 identified by match to protein family HMM PF04607 YP_188178.1 catalyzes the phosphorylation of NAD to NADP YP_188179.1 identified by match to protein family HMM PF00849; match to protein family HMM TIGR00005 YP_188180.1 identified by match to protein family HMM PF00571; match to protein family HMM PF01769; match to protein family HMM PF03448; match to protein family HMM TIGR00400 YP_188181.1 identified by match to protein family HMM PF00999; match to protein family HMM PF02080 YP_188182.1 identified by similarity to GP:13700489; match to protein family HMM PF04276 YP_188183.1 identified by similarity to OMNI:NTL01SA2470 YP_188184.1 identified by similarity to GP:14245835 YP_188185.1 identified by similarity to EGAD:39654; match to protein family HMM PF00005 YP_188187.1 identified by similarity to EGAD:14951 YP_188188.1 Catalyzes a key regulatory step in fatty acid biosynthesis YP_188189.1 identified by match to protein family HMM PF01594 YP_188190.1 identified by similarity to OMNI:NTL01SA0902; match to protein family HMM PF00756 YP_188191.1 similar to 2'-5' RNA ligase YP_188193.1 processive; catalyzes the formation of mono-, di- and tri-glucosyldiacylglycerol by the progressive transfer of glucosyl residues to diacylglycerol; involved in the formation of membrane glycolipids YP_188194.1 involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of lysine to UDP-N-acetylmuramoyl-L-alanyl-D-glutamate forming UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-L-lysine YP_188195.1 identified by similarity to OMNI:SA1024 YP_188196.1 stimulates the release of release factors 1 and 2 from the ribosome after hydrolysis of the ester bond in peptidyl-tRNA has occurred; GDP/GTP-binding protein YP_188197.1 identified by similarity to OMNI:SA1026; match to protein family HMM PF03741 YP_188198.1 identified by match to protein family HMM PF00089; match to protein family HMM PF00595 YP_188199.1 identified by match to protein family HMM PF02386 YP_188200.1 identified by match to protein family HMM PF01009; match to protein family HMM PF02872 YP_188201.1 identified by match to protein family HMM PF02517 YP_188202.1 identified by similarity to OMNI:SA1035 YP_188203.1 identified by match to protein family HMM PF02539; match to protein family HMM PF03099; match to protein family HMM TIGR00545 YP_188204.1 identified by similarity to OMNI:SA1033 YP_188206.1 identified by similarity to GP:12620779 YP_188209.1 identified by similarity to OMNI:NTL01SA0926; match to protein family HMM PF05154 YP_188211.1 identified by match to protein family HMM PF00583 YP_188212.1 catalyzes the formation of dimethylmenaquinone from 1,4-dihydroxy-2-naphthoate and octaprenyl diphosphate YP_188214.1 identified by match to protein family HMM PF00425; match to protein family HMM TIGR00543 YP_188215.1 identified by similarity to EGAD:19018; match to protein family HMM PF02776; match to protein family HMM TIGR00173 YP_188216.1 identified by match to protein family HMM PF00561 YP_188217.1 catalyzes the formation of 1,4-dihydroxy-2-naphthoate from O-succinylbenzoyl-CoA YP_188218.1 identified by match to protein family HMM PF00155 YP_188219.1 identified by similarity to OMNI:SA1059; match to protein family HMM PF01757 YP_188220.1 identified by match to protein family HMM PF01047 YP_188221.1 identified by similarity to EGAD:42602; match to protein family HMM PF01510; match to protein family HMM PF01832 YP_188222.1 identified by match to protein family HMM PF00583 YP_188223.1 identified by similarity to GP:8918792 YP_188224.1 identified by similarity to EGAD:36365 YP_188225.1 identified by match to protein family HMM PF03816; match to protein family HMM TIGR00350 YP_188226.1 identified by match to protein family HMM PF00144 YP_188227.1 catalyzes the hydrolysis of both purine and pyrimidine ribonucleosides YP_188228.1 identified by similarity to SP:P34959; match to protein family HMM PF03626 YP_188229.1 identified by similarity to EGAD:6311; match to protein family HMM PF00510 YP_188230.1 identified by similarity to EGAD:7190; match to protein family HMM PF00115 YP_188231.1 identified by similarity to SP:P34957; match to protein family HMM PF02790; match to protein family HMM TIGR01432 YP_188233.1 catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate YP_188234.1 identified by match to protein family HMM PF00731; match to protein family HMM TIGR01162 YP_188235.1 With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway YP_188236.1 catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase YP_188237.1 identified by match to protein family HMM PF02700; match to protein family HMM TIGR00302 YP_188238.1 catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis YP_188239.1 catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis YP_188240.1 Catalyzes first step of the de novo purine nucleotide biosynthetic pathway YP_188241.1 catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis YP_188242.1 identified by match to protein family HMM PF00551; match to protein family HMM TIGR00639 YP_188243.1 involved in de novo purine biosynthesis YP_188244.1 catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis YP_188245.1 identified by match to protein family HMM PF02361 YP_188246.1 identified by match to protein family HMM PF00005 YP_188247.1 identified by similarity to OMNI:SA1086 YP_188248.1 in group A Streptococci this protein was found to cross react with anti myosin antibodies and may play a role in rheumatic fever YP_188251.1 identified by similarity to OMNI:SA1088 YP_188252.1 identified by similarity to OMNI:SA1089 YP_188253.1 identified by similarity to OMNI:SA1090 YP_188254.1 identified by similarity to EGAD:6430; match to protein family HMM PF00381; match to protein family HMM TIGR01003 YP_188255.1 identified by similarity to SP:P08838; match to protein family HMM PF00391; match to protein family HMM PF02896; match to protein family HMM PF05524; match to protein family HMM TIGR01417 YP_188256.1 identified by similarity to OMNI:SA1093 YP_188257.1 identified by similarity to EGAD:98907; match to protein family HMM PF01654 YP_188258.1 identified by similarity to GP:4514629 YP_188259.1 identified by match to protein family HMM PF02080; match to protein family HMM PF02254 YP_188260.1 identified by match to protein family HMM PF00753; match to protein family HMM PF02147; match to protein family HMM TIGR00649 YP_188261.1 identified by similarity to OMNI:SA1099 YP_188262.1 cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+) YP_188263.1 identified by similarity to OMNI:SA1101 YP_188264.1 identified by similarity to SP:P21881; match to protein family HMM PF00676 YP_188265.1 identified by similarity to SP:P21882; match to protein family HMM PF02779; match to protein family HMM PF02780 YP_188266.1 identified by similarity to EGAD:102440; match to protein family HMM PF00198; match to protein family HMM PF00364; match to protein family HMM PF02817 YP_188267.1 E3 component of pyruvate complex; catalyzes the oxidation of dihydrolipoamide to lipoamide YP_188268.1 identified by similarity to OMNI:SA1106; match to protein family HMM PF05256 YP_188269.1 identified by match to protein family HMM PF01381 YP_188270.1 identified by similarity to EGAD:15160; match to protein family HMM PF00005 YP_188271.1 identified by similarity to EGAD:24120; match to protein family HMM PF00528 YP_188272.1 identified by similarity to EGAD:15490; match to protein family HMM PF00528 YP_188273.1 identified by similarity to EGAD:16715; match to protein family HMM PF01547 YP_188274.1 identified by similarity to OMNI:SA1112 YP_188275.1 identified by similarity to OMNI:NTL01SA0989 YP_188276.1 identified by match to protein family HMM PF01566; match to protein family HMM TIGR01197 YP_188277.1 identified by similarity to OMNI:NTL02SA1097 YP_188278.1 identified by match to protein family HMM PF00459 YP_188279.1 identified by similarity to OMNI:SA1117 YP_188280.1 identified by match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF03144; match to protein family HMM TIGR00231; match to protein family HMM TIGR01394 YP_188281.1 RTD; identified by match to protein family HMM PF02371 YP_188282.1 identified by similarity to OMNI:SA1119 YP_188283.1 identified by similarity to OMNI:SA1120 YP_188284.1 depletion of this protein in Bacillus subtilis results in defects in cell morphology; crystal structure of Staphylococcus protein shows homodimer; ligand binding protein YP_188286.1 identified by match to protein family HMM PF01098 YP_188287.1 biotin-containing enzyme that catalyzes a two step carboxylation of pyruvate to oxaloacetate YP_188288.1 identified by match to protein family HMM PF02628 YP_188289.1 converts protoheme IX and farnesyl diphosphate to heme O YP_188290.1 identified by similarity to OMNI:SA1126; match to protein family HMM PF04238 YP_188291.1 identified by similarity to OMNI:NTL01SA1003 YP_188292.1 identified by similarity to EGAD:108190 YP_188293.1 identified by match to protein family HMM PF03009 YP_188295.1 identified by similarity to OMNI:SA1131 YP_188296.1 identified by similarity to OMNI:SA1132 YP_188297.1 identified by match to protein family HMM PF03602; match to protein family HMM TIGR00095 YP_188298.1 Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA YP_188299.1 identified by similarity to OMNI:SA1135; match to protein family HMM PF05636 YP_188300.1 identified by similarity to OMNI:SA1136; match to protein family HMM PF02620 YP_188301.1 some L32 proteins have zinc finger motifs consisting of CXXC while others do not YP_188302.1 identified by match to protein family HMM PF00746; match to protein family HMM PF04650; match to protein family HMM TIGR01167; match to protein family HMM TIGR01168 YP_188303.1 identified by match to protein family HMM PF00588 YP_188304.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily YP_188305.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily YP_188306.1 An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids YP_188307.1 identified by similarity to OMNI:NTL01SA1025; match to protein family HMM PF05164 YP_188308.1 identified by match to protein family HMM PF02674 YP_188309.1 identified by match to protein family HMM PF00966; match to protein family HMM PF02231; match to protein family HMM PF02811 YP_188310.1 MutS2; MutS-II; involved in blocking homologous and homeologous recombination; has ATPase activity stimulated by recombination intermediates; inhibits DNA strand exchange YP_188311.1 identified by similarity to SP:P14949; match to protein family HMM PF00085; match to protein family HMM TIGR01068 YP_188312.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision YP_188313.1 identified by similarity to EGAD:20778 YP_188314.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol YP_188315.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase YP_188316.1 converts L-glutamate to D-glutamate, a component of peptidoglycan YP_188317.1 hydrolyzes non-standard nucleotides such as xanthine and inosine YP_188318.1 identified by match to protein family HMM PF01143; match to protein family HMM TIGR00040 YP_188319.1 identified by match to protein family HMM PF05480 YP_188320.1 identified by similarity to GP:3212079; match to protein family HMM PF05480 YP_188321.1 identified by match to protein family HMM PF05480 YP_188322.1 identified by similarity to GP:3212079; match to protein family HMM PF05480 YP_188323.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549 YP_188324.1 identified by match to protein family HMM PF00583 YP_188325.1 identified by similarity to OMNI:NTL01SA1060 YP_188326.1 MraZ; UPF0040; crystal structure shows similarity to AbrB YP_188327.1 identified by match to protein family HMM PF01795; match to protein family HMM TIGR00006 YP_188328.1 identified by similarity to EGAD:21242 YP_188329.1 identified by similarity to OMNI:NTL01SA1064; match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM PF03793 YP_188330.1 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan YP_188331.1 UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation YP_188332.1 identified by similarity to OMNI:SA1197; match to protein family HMM PF03799 YP_188333.1 identified by similarity to SP:O07325; match to protein family HMM PF02491; match to protein family HMM TIGR01174 YP_188334.1 GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function YP_188335.1 identified by similarity to SP:Q9ZHA4; match to protein family HMM PF02578; match to protein family HMM TIGR00726 YP_188336.1 identified by match to protein family HMM PF01168; match to protein family HMM TIGR00044 YP_188337.1 identified by similarity to GP:4009494; match to protein family HMM PF04472 YP_188338.1 identified by match to protein family HMM PF02325 YP_188339.1 identified by similarity to GP:4009496; match to protein family HMM PF01479 YP_188340.1 identified by match to protein family HMM PF05103 YP_188341.1 IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 1 subfamily; some organisms carry two different copies of this enzyme YP_188344.1 identified by match to protein family HMM PF05257 YP_188345.1 lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis YP_188346.1 identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00005 YP_188347.1 regulates pyrimidine biosynthesis by binding to the mRNA of the pyr genes, also has been shown to have uracil phosphoribosyltransferase activity YP_188348.1 identified by similarity to EGAD:18534; match to protein family HMM PF00860; match to protein family HMM TIGR00801 YP_188349.1 catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis YP_188350.1 catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis YP_188351.1 catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers YP_188352.1 four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity YP_188353.1 type 1 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase YP_188354.1 involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate YP_188355.1 identified by similarity to OMNI:SA1218 YP_188357.1 identified by similarity to OMNI:SA1219 YP_188358.1 identified by similarity to OMNI:SA1220; match to protein family HMM PF05670; match to protein family HMM PF05833 YP_188359.1 Essential for recycling GMP and indirectly, cGMP YP_188360.1 Promotes RNA polymerase assembly; latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits YP_188361.1 identified by similarity to SP:P24285; match to protein family HMM PF02441; match to protein family HMM PF04127; match to protein family HMM TIGR00521 YP_188362.1 identified by similarity to EGAD:98914; match to protein family HMM PF00271; match to protein family HMM TIGR00595 YP_188363.1 identified by similarity to OMNI:SA1226; match to protein family HMM PF05154 YP_188364.1 cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+) YP_188365.1 identified by match to protein family HMM PF00551; match to protein family HMM PF02911; match to protein family HMM TIGR00460 YP_188366.1 identified by match to protein family HMM PF01029; match to protein family HMM PF01189; match to protein family HMM TIGR00563 YP_188367.1 23S rRNA m2A2503 methyltransferase; methylates the C2 position of the A2530 nucleotide in 23S rRNA; may be involved in antibiotic resistance YP_188368.1 identified by match to protein family HMM PF00481 YP_188369.1 identified by match to protein family HMM PF00069; match to protein family HMM PF03793 YP_188370.1 identified by match to protein family HMM PF03193; match to protein family HMM TIGR00157 YP_188371.1 identified by similarity to EGAD:101737; match to protein family HMM PF00834; match to protein family HMM TIGR01163 YP_188372.1 identified by similarity to EGAD:108271; match to protein family HMM PF04263; match to protein family HMM PF04265 YP_188373.1 required for 70S ribosome assembly YP_188374.1 identified by similarity to OMNI:SA1239; match to protein family HMM PF03780 YP_188375.1 identified by match to protein family HMM PF02734 YP_188376.1 catalyzes branch migration in Holliday junction intermediates YP_188377.1 negative regulator of genes involved in fatty acid and phospholipid biosynthesis for gram positive bacteria YP_188378.1 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY YP_188379.1 identified by match to protein family HMM PF00698; match to protein family HMM TIGR00128 YP_188380.1 identified by similarity to EGAD:108288; match to protein family HMM PF00106; match to protein family HMM PF00678; match to protein family HMM TIGR01830 YP_188381.1 carries the fatty acid chain in fatty acid biosynthesis YP_188382.1 cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity YP_188383.1 identified by similarity to EGAD:37839; match to protein family HMM PF02463; match to protein family HMM PF02483; match to protein family HMM TIGR00650 YP_188384.1 identified by similarity to SP:P51835; match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM TIGR00064; match to protein family HMM TIGR00961 YP_188385.1 identified by similarity to OMNI:SA1252; match to protein family HMM PF04297 YP_188386.1 identified by similarity to EGAD:5600; match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM PF02978; match to protein family HMM TIGR00959 YP_188387.1 binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity YP_188388.1 Essential for efficient processing of 16S rRNA YP_188389.1 methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA YP_188390.1 this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site YP_188391.1 identified by similarity to OMNI:SA1259 YP_188393.1 essential GTPase; functions in ribosome assembly; binds a unique part of the 23S rRNA; interacts with ribosomal protein L25(Ctc) YP_188394.1 RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids YP_188395.1 catalyzes the interconversion of succinyl-CoA and succinate YP_188396.1 Catalyzes the only substrate-level phosphorylation in the TCA cycle YP_188397.1 identified by match to protein family HMM PF02481; match to protein family HMM TIGR00732 YP_188398.1 catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity YP_188399.1 TrmFO; Gid; glucose-inhibited division protein; similar to GidA; the gene from Bacillus subtilis encodes a tRNA-methyltransferase that utilizes folate as the carbon donor and bound flavin as reductant; modifies tRNA at position 54 (uridine) of the T-psi loop to form a C5-methyluridine YP_188400.1 identified by match to protein family HMM PF00589; match to protein family HMM PF02899 YP_188401.1 heat shock protein involved in degradation of misfolded proteins YP_188402.1 heat shock protein involved in degradation of misfolded proteins YP_188403.1 CodY; DNA-binding protein that represses the expression of many genes that are induced as cells make the transition from rapid exponential growth to stationary phase (By similarity). It is a GTP-binding protein that senses the intracellular GTP concentration as an indicator of nutritional limitations. At low GTP concentration it no longer binds GTP and stop to act as a transcriptional repressor YP_188405.1 one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit YP_188406.1 EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu YP_188407.1 Catalyzes the phosphorylation of UMP to UDP YP_188408.1 Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs YP_188409.1 catalyzes the formation of undecaprenyl pyrophosphate from isopentenyl pyrophosphate YP_188410.1 identified by match to protein family HMM PF01148 YP_188411.1 identified by match to protein family HMM PF00595; match to protein family HMM PF02163; match to protein family HMM TIGR00054 YP_188412.1 catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro) YP_188413.1 catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; required for leading strand synthesis; PolC exhibits 3' to 5' exonuclease activity YP_188414.1 in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins YP_188415.1 modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination YP_188416.1 identified by similarity to OMNI:SA1286; match to protein family HMM PF04296 YP_188417.1 identified by match to protein family HMM PF01248 YP_188418.1 Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex YP_188419.1 associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock YP_188420.1 catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs YP_188421.1 identified by similarity to SP:P54575; match to protein family HMM PF01687; match to protein family HMM TIGR00083 YP_188422.1 primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence YP_188423.1 identified by similarity to SP:P50849; match to protein family HMM PF00013; match to protein family HMM PF00575; match to protein family HMM PF01138; match to protein family HMM PF03725; match to protein family HMM PF03726 YP_188424.1 identified by match to protein family HMM PF00753; match to protein family HMM PF02147; match to protein family HMM TIGR00649 YP_188425.1 identified by match to protein family HMM PF01580 YP_188427.1 identified by similarity to OMNI:NTL01SA1161; match to protein family HMM PF05193 YP_188428.1 identified by match to protein family HMM PF00675; match to protein family HMM PF05193 YP_188429.1 identified by match to protein family HMM PF00106; match to protein family HMM PF00678 YP_188430.1 identified by match to protein family HMM PF01842 YP_188432.1 identified by match to protein family HMM PF01066; match to protein family HMM TIGR00560 YP_188433.1 identified by similarity to EGAD:108567; match to protein family HMM PF00994; match to protein family HMM TIGR00200 YP_188434.1 catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs YP_188435.1 protein from Staphylococcus aureus has phosphodiesterase activity against 2'-3'-cAMP and 2'-3'-cGMP YP_188436.1 identified by similarity to OMNI:SA1306 YP_188437.1 identified by similarity to OMNI:SA1307; match to protein family HMM PF00149; match to protein family HMM PF02640; match to protein family HMM TIGR00282 YP_188438.1 identified by similarity to EGAD:21889; match to protein family HMM PF01558; match to protein family HMM PF01855 YP_188439.1 catalyzes the coenzyme A dependent formation of succinyl-CoA from 2-oxoglutarate and ferredoxin YP_188440.1 identified by similarity to EGAD:107468 YP_188441.1 identified by similarity to OMNI:SA1310 YP_188442.1 catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A) YP_188443.1 identified by similarity to OMNI:SA1313 YP_188444.1 identified by similarity to OMNI:SA1314 YP_188445.1 This protein performs the mismatch recognition step during the DNA repair process YP_188446.1 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex YP_188447.1 identified by similarity to EGAD:18158; match to protein family HMM PF04309 YP_188448.1 identified by similarity to EGAD:21817; match to protein family HMM PF00230; match to protein family HMM TIGR00861 YP_188449.1 Converts glycerol and ADP to glycerol-3-phosphate and ADP YP_188450.1 identified by similarity to EGAD:18115; match to protein family HMM PF01224; match to protein family HMM PF01266 YP_188452.1 IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity YP_188453.1 identified by match to protein family HMM PF01423; match to protein family HMM PF03329 YP_188454.1 identified by similarity to EGAD:45646; match to protein family HMM PF00255 YP_188455.1 identified by match to protein family HMM PF04471 YP_188456.1 identified by similarity to OMNI:SA1327 YP_188457.1 identified by similarity to EGAD:15799; match to protein family HMM PF00376 YP_188458.1 identified by similarity to EGAD:102439; match to protein family HMM PF00120; match to protein family HMM PF03951; match to protein family HMM TIGR00653 YP_188460.1 identified by similarity to OMNI:NTL02SA0882; match to protein family HMM PF04233; match to protein family HMM TIGR01641 YP_188461.1 identified by similarity to OMNI:NTL01SA1196 YP_188463.1 identified by similarity to OMNI:NTL01SA1197 YP_188464.1 identified by similarity to OMNI:SA1350 YP_188465.1 identified by match to protein family HMM PF00614 YP_188466.1 identified by match to protein family HMM PF00005 YP_188468.1 identified by match to protein family HMM PF02518 YP_188469.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00196 YP_188471.1 identified by match to protein family HMM PF00565 YP_188472.1 identified by similarity to OMNI:SA1358 YP_188474.1 identified by similarity to GP:14247097 YP_188475.1 catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; lysine and threonine sensitive YP_188476.1 catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine YP_188477.1 catalyzes the formation of L-threonine from O-phospho-L-homoserine YP_188478.1 catalyzes the formation of O-phospho-L-homoserine from L-homoserine in threonine biosynthesis from asparate YP_188479.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR00099; match to protein family HMM TIGR01483; match to protein family HMM TIGR01484 YP_188480.1 identified by similarity to OMNI:SA1366 YP_188481.1 identified by match to protein family HMM PF00324 YP_188482.1 identified by similarity to GP:7161885; match to protein family HMM PF00199 YP_188483.1 in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif YP_188484.1 located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif YP_188485.1 identified by match to protein family HMM PF00478; match to protein family HMM TIGR01306 YP_188486.1 identified by similarity to OMNI:NTL01SA1219; match to protein family HMM PF00188 YP_188488.1 Represses a number of genes involved in the response to DNA damage YP_188489.1 identified by similarity to OMNI:SA1375 YP_188490.1 identified by similarity to OMNI:SA1376 YP_188491.1 identified by similarity to EGAD:29878; match to protein family HMM PF00456; match to protein family HMM PF02779; match to protein family HMM PF02780; match to protein family HMM TIGR00232 YP_188493.1 identified by match to protein family HMM PF03672 YP_188494.1 identified by similarity to EGAD:22488; match to protein family HMM PF00872 YP_188495.1 identified by similarity to OMNI:SA1380 YP_188496.1 identified by similarity to EGAD:9310; match to protein family HMM PF00149; match to protein family HMM PF02549; match to protein family HMM TIGR00619 YP_188497.1 identified by similarity to EGAD:7288 YP_188498.1 forms homopentamer; channel that opens in response to pressure or hypoosmotic shock YP_188499.1 identified by match to protein family HMM PF02028; match to protein family HMM TIGR00842 YP_188500.1 Catalyzes the conversion of citrate to isocitrate YP_188501.1 identified by match to protein family HMM PF03061; match to protein family HMM TIGR00051 YP_188502.1 identified by similarity to OMNI:SA1387 YP_188503.1 identified by match to protein family HMM PF02660; match to protein family HMM TIGR00023 YP_188504.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling YP_188505.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling YP_188506.1 identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835 YP_188507.1 identified by similarity to SP:P39805; match to protein family HMM PF00874; match to protein family HMM PF03123 YP_188508.1 identified by similarity to OMNI:SA1395; match to protein family HMM PF01594 YP_188509.1 identified by match to protein family HMM PF04329; match to protein family HMM PF04330; match to protein family HMM PF04331 YP_188510.1 this stereospecific enzymes reduces the S isomer of methionine sulfoxide while MsrB reduces the R form; provides protection against oxidative stress YP_188511.1 identified by match to protein family HMM PF03816; match to protein family HMM TIGR00350 YP_188512.1 identified by similarity to SP:Q01468; match to protein family HMM PF01361; match to protein family HMM TIGR00013 YP_188513.1 identified by match to protein family HMM PF00817 YP_188514.1 catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate YP_188515.1 with component II, the glutamine amidotransferase, catalyzes the formation of anthranilate from chorismate and glutamine YP_188516.1 identified by match to protein family HMM PF00117; match to protein family HMM TIGR00566 YP_188517.1 Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate YP_188518.1 involved in tryptophan biosynthesis; amino acid biosynthesis; converts 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate to C(1)-(3-indolyl)-glycerol 3-phosphate and carbon dioxide and water YP_188519.1 catalyzes the formation of 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate from N-(5-phospho-beta-D-ribosyl)-anthranilate in tryptophan biosynthesis YP_188520.1 catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate YP_188521.1 catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis YP_188522.1 identified by match to protein family HMM PF01965 YP_188524.1 identified by similarity to EGAD:29547; match to protein family HMM PF02388 YP_188525.1 identified by similarity to EGAD:29548; match to protein family HMM PF02388 YP_188527.1 identified by match to protein family HMM PF01497 YP_188528.1 identified by similarity to EGAD:89055; match to protein family HMM PF00005 YP_188529.1 identified by match to protein family HMM PF00005 YP_188530.1 identified by similarity to EGAD:9991; match to protein family HMM PF00528 YP_188531.1 identified by match to protein family HMM PF00528 YP_188532.1 identified by similarity to OMNI:SA1418 YP_188533.1 identified by similarity to EGAD:13184; match to protein family HMM PF01432 YP_188534.1 identified by similarity to EGAD:14202; match to protein family HMM PF01895 YP_188535.1 ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation YP_188536.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR00974 YP_188537.1 identified by match to protein family HMM PF00528 YP_188538.1 identified by match to protein family HMM PF01449; match to protein family HMM PF01547 YP_188539.1 identified by similarity to OMNI:NTL01SA1271 YP_188540.1 identified by match to protein family HMM PF00005 YP_188541.1 catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP, in Bacillus, lysine sensitive; regulated by response to starvation. YP_188542.1 identified by match to protein family HMM PF01118; match to protein family HMM PF02774; match to protein family HMM TIGR01296 YP_188543.1 catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis YP_188544.1 catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis YP_188545.1 identified by match to protein family HMM PF00132 YP_188546.1 identified by match to protein family HMM PF01546; match to protein family HMM TIGR01891 YP_188547.1 identified by similarity to GP:11991216; match to protein family HMM PF00842; match to protein family HMM PF01168 YP_188548.1 identified by match to protein family HMM PF00278; match to protein family HMM PF02784; match to protein family HMM TIGR01048 YP_188550.1 identified by match to protein family HMM PF00313 YP_188551.1 identified by similarity to OMNI:SA1438 YP_188552.1 catalyzes the hydrolysis of acylphosphate YP_188553.1 identified by similarity to EGAD:19663 YP_188554.1 identified by match to protein family HMM PF05816 YP_188555.1 identified by match to protein family HMM PF05525; match to protein family HMM TIGR00796 YP_188556.1 identified by similarity to OMNI:SA1444 YP_188558.1 identified by similarity to OMNI:SA1446 YP_188559.1 identified by similarity to OMNI:SA1447 YP_188562.1 identified by match to protein family HMM PF00005 YP_188563.1 component of 2-oxoglutarate dehydrogenase complex; catalyzes the transfer of succinyl coenzyme A to form succinyl CoA as part of the conversion of 2-oxoglutarate to succinyl-CoA YP_188564.1 SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide YP_188566.1 identified by similarity to OMNI:SA1450; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_188567.1 identified by similarity to OMNI:SA1451; match to protein family HMM PF00072; match to protein family HMM PF00486 YP_188568.1 RTD; identified by match to protein family HMM PF02371 YP_188569.1 identified by match to protein family HMM PF01569 YP_188570.1 UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis YP_188571.1 identified by match to protein family HMM PF00583 YP_188573.1 identified by match to protein family HMM PF00595; match to protein family HMM PF03572; match to protein family HMM TIGR00225 YP_188574.1 identified by similarity to OMNI:SA1456 YP_188575.1 identified by match to protein family HMM PF00358; match to protein family HMM TIGR00830 YP_188576.1 this stereospecific enzymes reduces the R isomer of methionine sulfoxide while MsrA reduces the S form; provides protection against oxidative stress YP_188577.1 this stereospecific enzymes reduces the S isomer of methionine sulfoxide while MsrB reduces the R form; provides protection against oxidative stress YP_188578.1 identified by match to protein family HMM PF02645; match to protein family HMM TIGR00762 YP_188579.1 identified by similarity to EGAD:43004; match to protein family HMM PF00186 YP_188580.1 ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived YP_188581.1 identified by match to protein family HMM PF00005 YP_188582.1 identified by match to protein family HMM PF02687 YP_188583.1 identified by similarity to OMNI:SA1464 YP_188584.1 identified by similarity to OMNI:SA1466 YP_188585.1 identified by similarity to OMNI:SA1467 YP_188586.1 identified by match to protein family HMM PF02592; match to protein family HMM TIGR00697 YP_188587.1 identified by similarity to EGAD:17851; match to protein family HMM PF00075 YP_188588.1 identified by similarity to OMNI:SA1472; match to protein family HMM PF01468; match to protein family HMM PF02370; match to protein family HMM PF02524; match to protein family HMM PF04508; match to protein family HMM PF04650; match to protein family HMM TIGR01168 YP_188589.1 identified by match to protein family HMM PF01367; match to protein family HMM PF02739 YP_188590.1 identified by similarity to OMNI:NTL01SA1323 YP_188591.1 identified by similarity to OMNI:NTL01XF01748 YP_188592.1 identified by similarity to OMNI:NTL01SA1326; match to protein family HMM PF01170 YP_188593.1 identified by similarity to OMNI:SA1484; match to protein family HMM PF05103 YP_188594.1 identified by similarity to OMNI:SA1485 YP_188595.1 identified by similarity to OMNI:NTL01SA1330 YP_188596.1 functions in homologous recombination, DNA repair, and chromosome segregation; binds preferentially to three- and four-stranded DNA intermediates; introduces specific nick sites in four-stranded DNA substrates; functions similarly to Escherichia coli RuvC YP_188597.1 identified by match to protein family HMM PF00905; match to protein family HMM PF00912 YP_188598.1 identified by similarity to OMNI:SA1491 YP_188599.1 identified by similarity to EGAD:24337; match to protein family HMM PF00633; match to protein family HMM PF00730; match to protein family HMM TIGR01083 YP_188600.1 identified by similarity to EGAD:16577; match to protein family HMM PF04271; match to protein family HMM TIGR01446 YP_188601.1 catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_188602.1 identified by similarity to EGAD:37750; match to protein family HMM PF00929; match to protein family HMM TIGR00573; match to protein family HMM TIGR01407 YP_188603.1 identified by similarity to EGAD:30996; match to protein family HMM PF01317; match to protein family HMM PF03099; match to protein family HMM TIGR00121 YP_188604.1 catalyzes the addition and repair of the 3'-terminal CCA sequence in tRNA; these proteins belong to the CCA-adding enzyme subfamily 2 which does not have phosphohydrolase activity YP_188605.1 identified by match to protein family HMM PF00534 YP_188606.1 identified by similarity to OMNI:SA1499; match to protein family HMM PF03819 YP_188607.1 identified by similarity to OMNI:SA1500; match to protein family HMM PF04298 YP_188608.1 identified by similarity to OMNI:SA1501 YP_188609.1 identified by similarity to OMNI:NTL01SA1344 YP_188610.1 identified by similarity to OMNI:NTL01SA1345 YP_188611.1 catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis YP_188612.1 catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis YP_188613.1 catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis YP_188614.1 catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate YP_188615.1 identified by match to protein family HMM PF00348 YP_188616.1 Catalyzes the carbon methylation reaction in the biosynthesis of ubiquinone YP_188617.1 identified by similarity to OMNI:SA1512 YP_188618.1 identified by similarity to EGAD:8587; match to protein family HMM PF00216 YP_188619.1 catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate YP_188620.1 EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains YP_188621.1 in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins YP_188622.1 Catalyzes the formation of (d)CDP from ATP and (d)CMP YP_188623.1 identified by similarity to EGAD:8552; match to protein family HMM PF00710 YP_188624.1 identified by match to protein family HMM PF00070 YP_188625.1 identified by match to protein family HMM PF01476 YP_188626.1 identified by similarity to EGAD:37724; match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM TIGR00614 YP_188627.1 identified by similarity to OMNI:NTL01SA1365 YP_188628.1 identified by similarity to SP:P50727 YP_188630.1 identified by similarity to OMNI:SA1526 YP_188631.1 identified by similarity to GP:7839534; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_188632.1 identified by similarity to EGAD:14175; similarity to OMNI:SA1535; match to protein family HMM PF00072; match to protein family HMM PF00486 YP_188633.1 identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093 YP_188634.1 identified by similarity to OMNI:SA1537; match to protein family HMM PF04079; match to protein family HMM TIGR00281 YP_188635.1 identified by similarity to OMNI:NTL01SA1377; match to protein family HMM PF02616 YP_188636.1 identified by similarity to OMNI:SA1539; match to protein family HMM PF03745 YP_188637.1 identified by similarity to EGAD:108451; match to protein family HMM PF00589; match to protein family HMM PF02899 YP_188638.1 identified by match to protein family HMM PF01475 YP_188639.1 identified by match to protein family HMM PF00293 YP_188640.1 identified by match to protein family HMM PF00248 YP_188641.1 identified by match to protein family HMM PF00106 YP_188642.1 identified by match to protein family HMM PF01089; match to protein family HMM TIGR00112 YP_188643.1 identified by match to protein family HMM PF00753 YP_188644.1 catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate YP_188646.1 identified by match to protein family HMM PF00165 YP_188647.1 identified by match to protein family HMM PF00128 YP_188648.1 catalyzes the formation of D-ribulose 5-phosphate from 6-phospho-D-gluconate YP_188649.1 identified by similarity to SP:P26311; match to protein family HMM PF01546; match to protein family HMM TIGR01883 YP_188651.1 identified by similarity to OMNI:NTL01SA1395 YP_188652.1 identified by similarity to OMNI:SA1558 YP_188653.1 identified by similarity to EGAD:13011; match to protein family HMM PF00198; match to protein family HMM PF00364; match to protein family HMM PF02817 YP_188654.1 identified by similarity to EGAD:21712; match to protein family HMM PF02779; match to protein family HMM PF02780 YP_188655.1 identified by similarity to EGAD:21637; match to protein family HMM PF00676 YP_188656.1 identified by match to protein family HMM PF00070; match to protein family HMM PF02852; match to protein family HMM TIGR01350 YP_188657.1 identified by similarity to EGAD:12400; match to protein family HMM TIGR00634 YP_188658.1 regulates arginine biosynthesis when complexed with arginine by binding at site that overlap the promotors of the arginine biosynthesis genes YP_188659.1 identified by similarity to SP:Q08291; match to protein family HMM PF00348 YP_188660.1 catalyzes the bidirectional exonucleolytic cleavage of DNA YP_188661.1 bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides YP_188662.1 Regulates rRNA biosynthesis by transcriptional antitermination YP_188663.1 identified by similarity to OMNI:SA1570; match to protein family HMM PF03780 YP_188664.1 an AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase, an enzyme that catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism YP_188665.1 identified by match to protein family HMM PF00364; match to protein family HMM TIGR00531 YP_188666.1 identified by similarity to EGAD:10055; match to protein family HMM PF00202; match to protein family HMM TIGR00707 YP_188667.1 catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate YP_188668.1 bifunctional arginine biosynthesis protein ArgJ; functions at the 1st and 5th steps in arginine biosynthesis; involved in synthesis of acetylglutamate from glutamate and acetyl-CoA and ornithine by transacetylation between acetylornithine and glutmate YP_188669.1 catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate YP_188670.1 Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA YP_188671.1 identified by similarity to GP:3372642; match to protein family HMM PF00557 YP_188673.1 identified by similarity to OMNI:SA1590 YP_188674.1 identified by match to protein family HMM PF02539; match to protein family HMM PF03099 YP_188675.1 identified by match to protein family HMM PF00581 YP_188676.1 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 1 to form the P protein YP_188677.1 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 2 to form the P protein YP_188678.1 catalyzes the transfer of a methylene carbon from the methylamine-loaded GcvH protein to tetrahydrofolate, causing the release of ammonia and the generation of reduced GcvH protein YP_188679.1 identified by similarity to EGAD:29699; match to protein family HMM PF01202 YP_188680.1 identified by similarity to OMNI:NTL01SA1420 YP_188681.1 identified by similarity to OMNI:NTL01SA1421 YP_188682.1 identified by similarity to OMNI:SA1598 YP_188683.1 identified by similarity to EGAD:18290 YP_188684.1 identified by similarity to EGAD:21818; match to protein family HMM PF00482 YP_188685.1 identified by similarity to EGAD:12231; match to protein family HMM PF00437 YP_188686.1 identified by match to protein family HMM PF00753 YP_188687.1 identified by match to protein family HMM PF01910; match to protein family HMM TIGR00106 YP_188688.1 identified by similarity to EGAD:33102; match to protein family HMM PF00480; match to protein family HMM TIGR00744 YP_188689.1 identified by similarity to OMNI:SA1605 YP_188690.1 identified by match to protein family HMM PF01694 YP_188691.1 identified by match to protein family HMM PF01812 YP_188692.1 in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif YP_188693.1 identified by similarity to OMNI:SA1609; match to protein family HMM PF00905; match to protein family HMM PF03717 YP_188695.1 identified by similarity to SP:P54375; match to protein family HMM PF00081; match to protein family HMM PF02777 YP_188696.1 identified by match to protein family HMM PF01475 YP_188697.1 identified by match to protein family HMM PF00950 YP_188698.1 identified by match to protein family HMM PF00005 YP_188699.1 Assists in DNA repair by cleaving phosphodiester bonds at apurinic or apyrimidinic sties to produce new 5' ends that are base-free deoxyribose 5-phosphate residues YP_188700.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271 YP_188701.1 identified by similarity to OMNI:SA1616; match to protein family HMM PF01784; match to protein family HMM TIGR00486 YP_188702.1 identified by similarity to OMNI:SA1617; match to protein family HMM PF04816 YP_188703.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; primary sigma factor of bacterium YP_188704.1 identified by similarity to EGAD:15135; match to protein family HMM PF01751; match to protein family HMM PF01807; match to protein family HMM TIGR01391 YP_188705.1 identified by similarity to OMNI:NTL01SA1444; match to protein family HMM PF03618 YP_188706.1 identified by match to protein family HMM PF00571 YP_188708.1 Catalyzes a two-step reaction, first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_188709.1 identified by match to protein family HMM PF02565 YP_188710.1 Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome YP_188711.1 identified by similarity to EGAD:8728; match to protein family HMM PF00383; match to protein family HMM TIGR01354 YP_188712.1 identified by similarity to EGAD:11045; match to protein family HMM PF01219 YP_188713.1 identified by match to protein family HMM PF02130; match to protein family HMM TIGR00043 YP_188714.1 identified by match to protein family HMM PF02562 YP_188715.1 identified by similarity to OMNI:SA1629 YP_188716.1 identified by similarity to OMNI:SA1630 YP_188717.1 identified by similarity to OMNI:SA1631 YP_188719.1 a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA YP_188720.1 identified by similarity to OMNI:SA1633; match to protein family HMM PF00919; match to protein family HMM PF01938; match to protein family HMM PF04055; match to protein family HMM TIGR00089; match to protein family HMM TIGR01579 YP_188721.1 in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase YP_188722.1 methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype YP_188723.1 chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion YP_188724.1 heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria YP_188725.1 with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor YP_188726.1 identified by similarity to EGAD:15810; match to protein family HMM PF01628; match to protein family HMM TIGR00331 YP_188727.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III YP_188728.1 binds to the ribosome on the universally-conserved alpha-sarcin loop YP_188729.1 binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase YP_188730.1 required for the assembly and function of the DNAX complex which is required for the assembly of the beta subunit onto primed DNA YP_188731.1 identified by match to protein family HMM PF00753; match to protein family HMM PF03772; match to protein family HMM TIGR00360; match to protein family HMM TIGR00361 YP_188732.1 identified by similarity to EGAD:23914; match to protein family HMM PF00383 YP_188733.1 identified by similarity to OMNI:NTL01LL1813; match to protein family HMM PF00633; match to protein family HMM TIGR00426 YP_188734.1 identified by similarity to OMNI:SA1647 YP_188735.1 identified by match to protein family HMM PF02410; match to protein family HMM TIGR00090 YP_188736.1 identified by similarity to OMNI:SA1649; match to protein family HMM PF01966; match to protein family HMM TIGR00488 YP_188737.1 identified by similarity to OMNI:SA1650; match to protein family HMM PF01467; match to protein family HMM TIGR00125; match to protein family HMM TIGR00482 YP_188738.1 identified by match to protein family HMM PF01985; match to protein family HMM TIGR00253 YP_188739.1 identified by similarity to EGAD:45757; match to protein family HMM PF01488; match to protein family HMM TIGR00507 YP_188740.1 in Bacillus subtilis this enzyme appears to be involved in 30S ribosomal RNA subunit biogenesis YP_188741.1 identified by similarity to OMNI:SA1654; match to protein family HMM TIGR01662; match to protein family HMM TIGR01668 YP_188742.1 identified by similarity to EGAD:16140; match to protein family HMM PF01048; match to protein family HMM TIGR01704 YP_188743.1 identified by similarity to OMNI:SA1659 YP_188744.1 identified by similarity to OMNI:SA1660; match to protein family HMM PF03746 YP_188745.1 identified by match to protein family HMM PF00289; match to protein family HMM PF02785; match to protein family HMM PF02786 YP_188746.1 identified by match to protein family HMM PF00364 YP_188747.1 identified by match to protein family HMM PF02626; match to protein family HMM TIGR00724 YP_188748.1 identified by similarity to OMNI:SA1664; match to protein family HMM PF02682; match to protein family HMM TIGR00370 YP_188749.1 identified by similarity to EGAD:14951; match to protein family HMM PF01797 YP_188750.1 necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus YP_188751.1 functions in pyrimidine salvage; pyrimidine ribonucleoside kinase; phosphorylates nucleosides or dinucleosides to make UMP or CMP using ATP or GTP as the donor YP_188752.1 identified by match to protein family HMM PF01136 YP_188753.1 identified by match to protein family HMM PF01136 YP_188754.1 identified by match to protein family HMM PF01596 YP_188755.1 identified by similarity to OMNI:SA1670 YP_188756.1 similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function YP_188757.1 identified by similarity to OMNI:SA1672 YP_188758.1 Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_188759.1 identified by match to protein family HMM TIGR01448 YP_188760.1 identified by similarity to OMNI:SA1675; match to protein family HMM PF00515 YP_188761.1 catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs YP_188762.1 identified by match to protein family HMM PF00266 YP_188763.1 identified by match to protein family HMM PF00296 YP_188764.1 identified by similarity to OMNI:SA1679 YP_188765.1 identified by match to protein family HMM PF02082; match to protein family HMM TIGR00738 YP_188766.1 identified by match to protein family HMM PF00004 YP_188767.1 identified by match to protein family HMM PF00899 YP_188768.1 catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes YP_188769.1 catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG YP_188770.1 identified by match to protein family HMM PF01520 YP_188771.1 hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine YP_188772.1 identified by similarity to EGAD:107375; match to protein family HMM PF01842; match to protein family HMM PF01966; match to protein family HMM PF02824; match to protein family HMM PF04607; match to protein family HMM TIGR00691 YP_188774.1 catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis YP_188775.1 identified by similarity to EGAD:24228; match to protein family HMM PF01368; match to protein family HMM PF02272; match to protein family HMM TIGR00644 YP_188776.1 part of the preprotein secretory system; forms a complex with protein YajC; SecDFyajC stimulates the proton motive force-driven protein translocation, seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF YP_188777.1 identified by match to protein family HMM PF02699; match to protein family HMM TIGR00739 YP_188778.1 Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr) YP_188779.1 Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step YP_188780.1 promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration YP_188781.1 plays an essential role in ATP-dependent branch migration of the Holliday junction YP_188782.1 identified by match to protein family HMM PF01842 YP_188783.1 essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication YP_188784.1 involved in the peptidyltransferase reaction during translation YP_188785.1 identified by similarity to OMNI:SA1701; match to protein family HMM PF04327 YP_188786.1 identified by match to protein family HMM PF00829; match to protein family HMM TIGR00061 YP_188787.1 identified by match to protein family HMM PF04093 YP_188788.1 in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall YP_188790.1 identified by similarity to OMNI:NTL01SA1531 YP_188791.1 identified by similarity to GP:14247423 YP_188794.1 identified by similarity to EGAD:8703; match to protein family HMM PF00398 YP_188795.1 identified by similarity to EGAD:9921; match to protein family HMM PF01909 YP_188796.1 identified by similarity to EGAD:6135 YP_188797.1 identified by similarity to EGAD:8390; match to protein family HMM PF00589; match to protein family HMM PF02899 YP_188798.1 identified by similarity to EGAD:7942; match to protein family HMM PF00589; match to protein family HMM PF02899 YP_188799.1 disrupted by a copy of Tn554 may be nonfunctional; identified by match to protein family HMM PF04002; match to protein family HMM TIGR00608 YP_188800.1 identified by match to protein family HMM PF01478 YP_188801.1 identified by similarity to EGAD:12279; similarity to EGAD:42028; match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM TIGR01499 YP_188802.1 valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain YP_188803.1 identified by similarity to EGAD:6433; match to protein family HMM PF03352 YP_188804.1 identified by match to protein family HMM PF05145 YP_188805.1 Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway YP_188806.1 catalyzes the formation of porphobilinogen from 5-aminolevulinate YP_188807.1 identified by match to protein family HMM PF02602 YP_188808.1 transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis YP_188809.1 identified by similarity to EGAD:15411; match to protein family HMM PF01578 YP_188810.1 catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins YP_188811.1 binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential YP_188812.1 binds and unfolds substrates as part of the ClpXP protease YP_188813.1 Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer YP_188814.1 identified by similarity to OMNI:SA1723 YP_188815.1 identified by match to protein family HMM PF00293 YP_188816.1 binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit YP_188817.1 identified by match to protein family HMM PF01632; match to protein family HMM TIGR00001 YP_188818.1 IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits YP_188819.1 identified by match to protein family HMM PF00324 YP_188820.1 catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr) YP_188821.1 Primosomal protein that may act to load helicase DnaC during DNA replication YP_188822.1 identified by similarity to EGAD:12808 YP_188823.1 identified by match to protein family HMM PF02644; match to protein family HMM PF03477; match to protein family HMM TIGR00244 YP_188824.1 identified by similarity to EGAD:107759; match to protein family HMM PF00044; match to protein family HMM PF02800; match to protein family HMM TIGR01534 YP_188825.1 catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis YP_188826.1 In the Gram-positive bacteria, the preferred gene symbol is fpg. In other prokaryotes, the gene symbol is mutM.; identified by similarity to EGAD:8853; match to protein family HMM PF01149; match to protein family HMM TIGR00577 YP_188827.1 identified by similarity to EGAD:108026; match to protein family HMM PF00476; match to protein family HMM PF01367; match to protein family HMM PF02739; match to protein family HMM TIGR00593 YP_188828.1 identified by similarity to EGAD:18590; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_188829.1 identified by similarity to EGAD:18490; match to protein family HMM PF00072; match to protein family HMM PF00486 YP_188830.1 Converts isocitrate to alpha ketoglutarate YP_188831.1 catalyzes the formation of citrate from acetyl-CoA and oxaloacetate YP_188832.1 identified by similarity to EGAD:22488; match to protein family HMM PF00872 YP_188833.1 identified by match to protein family HMM PF00324 YP_188834.1 identified by similarity to EGAD:37614; match to protein family HMM PF00224; match to protein family HMM PF00391; match to protein family HMM PF02887; match to protein family HMM TIGR01064 YP_188835.1 catalyzes the formation of D-fructose 1,6-bisphosphate from D-fructose 6-phosphate in glycolysis YP_188836.1 catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein YP_188837.1 catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer of AccA2D2 subunits YP_188838.1 identified by match to protein family HMM PF00390; match to protein family HMM PF03949 YP_188839.1 identified by similarity to EGAD:108043; match to protein family HMM PF02231; match to protein family HMM TIGR00594 YP_188840.1 identified by match to protein family HMM PF01368; match to protein family HMM PF02272 YP_188841.1 identified by match to protein family HMM PF00571; match to protein family HMM PF03061 YP_188842.1 identified by similarity to OMNI:SA1753; match to protein family HMM PF00582 YP_188843.1 catalyzes the opening and hydrolysis of the beta-lactam ring of beta-lactam antibiotics such as penicillins and cephalosporins YP_188844.1 identified by similarity to EGAD:30261; match to protein family HMM PF00557 YP_188845.1 identified by similarity to EGAD:15508; match to protein family HMM PF01262; match to protein family HMM PF05222; match to protein family HMM TIGR00518 YP_188846.1 identified by similarity to OMNI:SA1759; match to protein family HMM PF00582 YP_188847.1 AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation; utilizes magnesium and ATP; also involved in conversion of acetate to aceyl-CoA YP_188848.1 identified by similarity to OMNI:NTL01SA1590 YP_188849.1 antioxidant activity; thioredoxin-dependent thiol peroxidase; forms homodimers in solution; shows substrate specificity to alkyl hydroperoxides; periplasmic protein YP_188850.1 identified by similarity to OMNI:SA1763; match to protein family HMM PF01925 YP_188851.1 Required for the synthesis of the thiazole moiety YP_188852.1 identified by match to protein family HMM PF00266 YP_188853.1 acts to negatively regulates ftsZ ring formation by modulating the frequency and position of the ftsZ ring formation YP_188854.1 identified by match to protein family HMM PF01590 YP_188856.1 primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination YP_188857.1 identified by match to protein family HMM PF03009 YP_188858.1 identified by match to protein family HMM PF02566 YP_188859.1 identified by match to protein family HMM PF00266 YP_188860.1 catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate YP_188861.1 identified by match to protein family HMM PF00702 YP_188862.1 identified by match to protein family HMM PF00367; match to protein family HMM PF02378 YP_188863.1 identified by match to protein family HMM PF01553; match to protein family HMM TIGR00530 YP_188864.1 identified by similarity to OMNI:NTL01LL2179; match to protein family HMM PF00089; match to protein family HMM PF00595 YP_188865.1 identified by match to protein family HMM PF00579; match to protein family HMM PF01479; match to protein family HMM TIGR00234 YP_188866.1 identified by match to protein family HMM PF00912 YP_188867.1 catalyzes the formation of 10-formyltetrahydrofolate from formate and tetrahydrofolate YP_188868.1 identified by similarity to EGAD:41199; match to protein family HMM PF00356; match to protein family HMM PF00532; match to protein family HMM TIGR01481 YP_188869.1 catalyzes the formation of 3-deoxy-D-aribino-hept-2-ulosonate 7-phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate and the formation of prephenate from chorismate YP_188870.1 identified by similarity to OMNI:SA1788 YP_188871.1 identified by similarity to OMNI:SA1789 YP_188872.1 Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis YP_188873.1 identified by match to protein family HMM PF01580 YP_188874.1 identified by similarity to OMNI:SA1792; match to protein family HMM PF01588 YP_188875.1 identified by similarity to OMNI:NTL01SA1621 YP_188876.1 identified by match to protein family HMM PF00085 YP_188877.1 identified by similarity to EGAD:40297; match to protein family HMM PF05343 YP_188878.1 identified by similarity to OMNI:SA1796 YP_188879.1 tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine YP_188880.1 identified by similarity to OMNI:NTL01SA1627; match to protein family HMM PF01636 YP_188881.1 identified by similarity to SP:P19938; match to protein family HMM PF01063; match to protein family HMM TIGR01121 YP_188882.1 divalent metal ion-dependent extracellular dipeptidase; able to hydrolyze a broad range of dipeptides but no tri-, tetra-, or larger oligopeptides; differences in the amino acid specificity of the cleavage site varies between species; similar to succinyl-diaminopimelate desuccinylases YP_188883.1 identified by similarity to OMNI:SA1802 YP_188884.1 identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093 YP_188885.1 identified by match to protein family HMM PF01943 YP_188887.1 identified by similarity to OMNI:SA1805; match to protein family HMM PF03486; match to protein family HMM TIGR00275 YP_188888.1 identified by match to protein family HMM PF00746; match to protein family HMM PF04650; match to protein family HMM TIGR01167; match to protein family HMM TIGR01168 YP_188889.1 identified by match to protein family HMM PF00581 YP_188890.1 leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase YP_188892.1 identified by similarity to OMNI:SA1810; match to protein family HMM PF04055; match to protein family HMM TIGR01212 YP_188893.1 identified by similarity to OMNI:SA1811 YP_188894.1 identified by match to protein family HMM TIGR01889 YP_188896.1 identified by match to protein family HMM PF01619 YP_188897.1 RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not YP_188898.1 identified by similarity to EGAD:14797; match to protein family HMM PF00925; match to protein family HMM PF00926; match to protein family HMM TIGR00505; match to protein family HMM TIGR00506 YP_188899.1 catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine YP_188900.1 identified by similarity to EGAD:14315; match to protein family HMM PF00383; match to protein family HMM PF01872; match to protein family HMM TIGR00326 YP_188901.1 identified by similarity to OMNI:SA1821 YP_188902.1 identified by match to protein family HMM PF01832 YP_188903.1 identified by similarity to OMNI:SA1826 YP_188905.1 identified by similarity to OMNI:NTL01SA1652; match to protein family HMM PF04542 YP_188906.1 identified by similarity to OMNI:SA1828 YP_188907.1 identified by similarity to OMNI:SA1829 YP_188908.1 similar to novel fructose-6-phosphate aldolase from Escherichia coli; enzyme from Methanocaldococcus janaschii shows transaldolase activity YP_188909.1 identified by similarity to OMNI:NTL01SA1657 YP_188910.1 may be involved in chromosome condensation; overexpression in Escherichia coli protects against decondensation by camphor; overexpressing the protein results in an increase in supercoiling YP_188911.1 identified by match to protein family HMM PF02537 YP_188912.1 This element is disrupted by Tn554; may be nonfunctional due to interuption YP_188915.1 identified by similarity to EGAD:8703; match to protein family HMM PF00398 YP_188916.1 identified by similarity to EGAD:9921; match to protein family HMM PF01909 YP_188917.1 identified by similarity to EGAD:6135 YP_188918.1 identified by similarity to EGAD:8390; match to protein family HMM PF00589; match to protein family HMM PF02899 YP_188919.1 identified by similarity to EGAD:7942; match to protein family HMM PF00589; match to protein family HMM PF02899 YP_188920.1 This element is disrupted by Tn554; identified by match to protein family HMM PF02371; may be nonfunctional due to interruption YP_188921.1 identified by match to protein family HMM PF00248 YP_188922.1 identified by similarity to GP:14247561 YP_188923.1 methionine adenosyltransferase; catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase YP_188924.1 PEP carboxykinase; PEP carboxylase; PEPCK; catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using ATP YP_188925.1 identified by similarity to OMNI:SA1840 YP_188926.1 identified by match to protein family HMM PF00293 YP_188927.1 identified by similarity to OMNI:SA1842; match to protein family HMM PF01809; match to protein family HMM TIGR00278 YP_188928.1 identified by match to protein family HMM TIGR01928 YP_188929.1 identified by match to protein family HMM PF00501; match to protein family HMM TIGR01923 YP_188934.1 identified by similarity to OMNI:SA1885 YP_188935.1 catalyzes the formation of protoporphyrin IX from protoporphyrinogen IX YP_188936.1 protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic YP_188937.1 catalyzes the formation of coproporphyrinogen from uroporphyrinogen III YP_188938.1 identified by similarity to OMNI:SA1891 YP_188939.1 identified by match to protein family HMM PF03596 YP_188940.1 identified by similarity to EGAD:35133 YP_188941.1 identified by match to protein family HMM PF00005 YP_188942.1 identified by match to protein family HMM PF01230 YP_188943.1 identified by similarity to OMNI:SA1895 YP_188944.1 identified by similarity to OMNI:SA1896 YP_188945.1 identified by similarity to EGAD:7364; match to protein family HMM PF00639 YP_188946.1 identified by similarity to OMNI:SA2433 YP_188947.1 catalyzes the exonucleic cleavage of mRNA yielding nucleioside 5'-phosphates YP_188948.1 identified by similarity to OMNI:SA1899 YP_188949.1 identified by match to protein family HMM PF00149; match to protein family HMM PF02549 YP_188950.1 identified by similarity to OMNI:SA1902 YP_188951.1 identified by similarity to OMNI:SA1903; match to protein family HMM PF04286 YP_188953.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00196 YP_188954.1 identified by match to protein family HMM PF02518 YP_188955.1 identified by match to protein family HMM PF00849 YP_188956.1 class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle YP_188957.1 identified by similarity to OMNI:NTL01SA1729 YP_188958.1 identified by similarity to OMNI:SA1911 YP_188959.1 identified by match to protein family HMM PF01182 YP_188960.1 identified by match to protein family HMM PF00588; match to protein family HMM TIGR00185 YP_188961.1 identified by match to protein family HMM PF00037; match to protein family HMM TIGR00276 YP_188962.1 identified by similarity to GP:8918792 YP_188963.1 identified by similarity to SP:P27675; match to protein family HMM PF00005 YP_188964.1 identified by match to protein family HMM PF00497; match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_188965.1 identified by match to protein family HMM PF02378 YP_188966.1 identified by similarity to EGAD:7212; match to protein family HMM PF00089 YP_188967.1 identified by match to protein family HMM PF01475 YP_188968.1 identified by match to protein family HMM PF00389; match to protein family HMM PF02826 YP_188969.1 identified by match to protein family HMM PF00578 YP_188970.1 converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate YP_188971.1 identified by similarity to OMNI:NTL01SA1742 YP_188972.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_188974.1 identified by similarity to OMNI:SA1925; match to protein family HMM PF04167 YP_188975.1 identified by match to protein family HMM PF00633; match to protein family HMM PF00730; match to protein family HMM TIGR01084 YP_188976.1 identified by similarity to OMNI:SA1927; match to protein family HMM PF04307 YP_188977.1 identified by similarity to OMNI:SA1928 YP_188979.1 identified by similarity to OMNI:NTL01SA1749 YP_188980.1 binds RecA and inhibits RecA-mediated DNA strand exchange and ATP hydrolysis and coprotease activities YP_188981.1 monofunctional; catalyzes the elongation of glycan strands in cell wall biosynthesis YP_188982.1 identified by match to protein family HMM PF01965; match to protein family HMM TIGR01382 YP_188983.1 identified by similarity to OMNI:SA1934 YP_188984.1 identified by similarity to OMNI:NTL01SA1754; match to protein family HMM PF04055 YP_188985.1 identified by match to protein family HMM PF03061 YP_188986.1 identified by match to protein family HMM PF02073 YP_188987.1 identified by similarity to GP:14247652 YP_188988.1 identified by match to protein family HMM PF01451 YP_188989.1 identified by similarity to OMNI:SA1940 YP_188990.1 identified by match to protein family HMM PF03631; match to protein family HMM TIGR00765 YP_188991.1 identified by similarity to OMNI:NTL01SA1761; match to protein family HMM PF00072; match to protein family HMM PF00196 YP_188992.1 identified by match to protein family HMM PF02518 YP_188993.1 identified by similarity to OMNI:SA1944 YP_188994.1 identified by similarity to OMNI:SA1945 YP_188995.1 catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mn YP_188996.1 identified by similarity to OMNI:NTL01SA1766 YP_189000.1 identified by similarity to EGAD:8114; match to protein family HMM PF00210 YP_189001.1 identified by match to protein family HMM PF00929 YP_189002.1 involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function YP_189003.1 identified by similarity to OMNI:SA1956 YP_189004.1 identified by match to protein family HMM PF01938; match to protein family HMM TIGR00479 YP_189005.1 similar to YegS from E. coli YP_189006.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA YP_189007.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA YP_189008.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; some Mycoplasma proteins contain an N-terminal fusion to an unknown domain YP_189009.1 identified by similarity to GP:2565311; match to protein family HMM PF00474; match to protein family HMM TIGR00813 YP_189010.1 identified by similarity to OMNI:NTL01SA1780 YP_189011.1 identified by similarity to SP:O87703; match to protein family HMM PF00533; match to protein family HMM PF01653; match to protein family HMM PF03119; match to protein family HMM PF03120; match to protein family HMM TIGR00575 YP_189012.1 identified by match to protein family HMM PF00580; match to protein family HMM TIGR01073 YP_189013.1 PcrB-like protein; GGGP synthase; member of prenyltransferases that transfer isoprenoid groups to nonisoprenoid acceptors; functions in form GGGP from glycerol-1-phosphate (G-1-P) and geranylgeranyl pyrophosphate (GGPP); important in lipid metabolism and especially important as the ether linkages in archaea are different than those in bacteria; GGGP synthase lies at the branch point for membrane lipid biosynthesis; cytosolic; T acidophilum protein acts as a homodimer while M thermoautotrophicum protein has been reported to function as a pentamer YP_189014.1 identified by similarity to OMNI:SA1968 YP_189015.1 Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide YP_189016.1 identified by similarity to EGAD:107605 YP_189017.1 identified by similarity to OMNI:SA1973 YP_189018.1 catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers YP_189019.2 catalyzes the formation of 5-phospho-alpha-D-ribose 1-diphosphate and nicotinate from nicotinate D-ribonucleotide and diphosphate YP_189020.1 identified by match to protein family HMM PF02898 YP_189021.1 identified by similarity to EGAD:17359; match to protein family HMM PF00800; match to protein family HMM PF01842 YP_189022.1 identified by similarity to OMNI:NTL01SA1794 YP_189023.1 identified by match to protein family HMM PF00857 YP_189024.1 catalyzes the hydrolysis of pyrophosphate to phosphate YP_189025.1 identified by similarity to EGAD:18867; match to protein family HMM PF00171 YP_189026.1 identified by similarity to OMNI:NTL01SA1798 YP_189027.1 identified by similarity to OMNI:SA1986 YP_189028.1 identified by similarity to EGAD:13370; match to protein family HMM PF03965 YP_189029.1 identified by similarity to SP:P18357; match to protein family HMM PF00144; match to protein family HMM PF00905; match to protein family HMM PF05569 YP_189030.1 identified by similarity to SP:P00807; match to protein family HMM PF00144 YP_189032.1 identified by similarity to EGAD:6135 YP_189033.1 identified by similarity to EGAD:8390; match to protein family HMM PF00589 YP_189034.1 identified by similarity to EGAD:7942; match to protein family HMM PF00589; match to protein family HMM PF02899 YP_189035.1 identified by similarity to OMNI:SA1987 YP_189036.1 identified by similarity to OMNI:SA1988 YP_189037.1 identified by similarity to OMNI:SA1989 YP_189039.1 identified by similarity to OMNI:SA1991 YP_189040.1 identified by similarity to OMNI:SA1993 YP_189041.1 identified by match to protein family HMM PF00005 YP_189042.1 identified by similarity to OMNI:SA1995 YP_189043.1 identified by match to protein family HMM PF00005 YP_189044.1 identified by match to protein family HMM PF00392 YP_189045.1 identified by similarity to OMNI:SA1998 YP_189046.1 identified by similarity to OMNI:SA1999 YP_189048.1 identified by match to protein family HMM PF00746; match to protein family HMM PF04650; match to protein family HMM TIGR01167 YP_189049.1 identified by match to protein family HMM PF00746; match to protein family HMM TIGR01167 YP_189050.1 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth YP_189051.1 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring YP_189052.1 identified by match to protein family HMM PF02517 YP_189053.1 identified by similarity to GP:8101009 YP_189054.1 identified by match to protein family HMM PF00795 YP_189055.1 Lyses erythrocytes and other mammalian cells YP_189056.1 identified by similarity to OMNI:SA2023; match to protein family HMM PF04647 YP_189057.1 identified by similarity to EGAD:18902 YP_189058.1 identified by similarity to GP:2258296; match to protein family HMM PF02518 YP_189059.1 identified by similarity to EGAD:16137; match to protein family HMM PF00072; match to protein family HMM PF04397 YP_189060.1 identified by match to protein family HMM PF00294 YP_189061.1 identified by similarity to EGAD:20672; match to protein family HMM PF00251; match to protein family HMM TIGR01322 YP_189063.1 identified by similarity to EGAD:43207; match to protein family HMM PF00356; match to protein family HMM PF00532 YP_189064.1 identified by similarity to EGAD:19589; match to protein family HMM PF00909; match to protein family HMM TIGR00836 YP_189065.1 identified by similarity to OMNI:NTL01SA1924; match to protein family HMM PF01206 YP_189066.1 identified by similarity to EGAD:107864; match to protein family HMM PF00239 YP_189067.1 identified by match to protein family HMM PF00249 YP_189071.1 identified by similarity to OMNI:NTL01LL0750 YP_189073.1 identified by similarity to EGAD:44482 YP_189075.1 B2 or R2 protein; type 1b enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdE YP_189076.1 contains an intein; may be nonfunctional due to interuption YP_189077.1 This gene may be part of a small mobile genetic element because it disrupts the gene encoding the alpha subunit of ribonucleoside-diphosphate reductase 2.; identified by match to protein family HMM PF01844 YP_189078.1 contains a 384 residue intein; identified by match to protein family HMM PF00317; match to protein family HMM PF02867; match to protein family HMM TIGR01443; match to protein family HMM TIGR01445; may be nonfunctional due to interuption YP_189080.1 identified by match to protein family HMM PF02555; match to protein family HMM TIGR00333 YP_189083.1 identified by similarity to GP:2444088 YP_189088.1 identified by match to protein family HMM PF00145; match to protein family HMM TIGR00675 YP_189099.1 identified by match to protein family HMM PF01068 YP_189103.1 identified by match to protein family HMM PF02231; match to protein family HMM PF02811 YP_189105.1 identified by similarity to GP:11094377 YP_189106.1 identified by similarity to GP:14020902 YP_189110.1 identified by similarity to EGAD:109331; match to protein family HMM PF00149 YP_189114.1 identified by similarity to OMNI:NTL03PA00054; match to protein family HMM PF05012; match to protein family HMM TIGR01550 YP_189117.1 identified by similarity to EGAD:44049; match to protein family HMM PF00149 YP_189120.1 identified by match to protein family HMM PF00149 YP_189123.1 identified by similarity to GP:7190132 YP_189132.1 identified by similarity to EGAD:101508 YP_189133.1 identified by similarity to OMNI:NTL02SA1984 YP_189135.1 identified by match to protein family HMM PF00565 YP_189136.1 identified by similarity to GP:5001708 YP_189137.1 identified by similarity to GP:2765130 YP_189139.1 identified by similarity to OMNI:SA0352 YP_189143.1 identified by similarity to EGAD:74104 YP_189144.1 identified by similarity to OMNI:SA0028; match to protein family HMM PF00665 YP_189146.1 identified by similarity to EGAD:43004; match to protein family HMM PF00186 YP_189147.1 ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived YP_189148.1 identified by similarity to OMNI:SA0028; may be nonfunctional due to interuption YP_189149.1 identified by similarity to EGAD:22488; match to protein family HMM PF00872 YP_189150.1 identified by similarity to EGAD:8514; match to protein family HMM PF00583; match to protein family HMM PF01636 YP_189151.1 identified by match to protein family HMM PF00583 YP_189152.1 identified by similarity to EGAD:22488; match to protein family HMM PF00872 YP_189153.1 identified by similarity to OMNI:SA0028; may be nonfunctional due to interuption YP_189155.1 identified by match to protein family HMM PF01368 YP_189156.1 identified by similarity to EGAD:107455 YP_189157.1 identified by similarity to EGAD:107457 YP_189158.1 identified by similarity to EGAD:107458 YP_189159.1 identified by similarity to EGAD:107459 YP_189160.1 identified by similarity to EGAD:107460 YP_189166.1 identified by match to protein family HMM PF00589; match to protein family HMM PF02899 YP_189170.1 identified by similarity to GP:9944577 YP_189173.1 identified by similarity to GP:14325470 YP_189174.1 identified by similarity to OMNI:EF1882 YP_189175.1 identified by similarity to OMNI:NTL01SPL1390 YP_189184.1 identified by similarity to OMNI:NTL01SPL1451 YP_189186.1 identified by similarity to EGAD:8587; match to protein family HMM PF00216 YP_189187.1 identified by similarity to EGAD:107767 YP_189188.1 identified by similarity to EGAD:107768 YP_189189.1 identified by similarity to EGAD:107771 YP_189190.1 identified by similarity to EGAD:73596 YP_189199.1 identified by similarity to EGAD:107781 YP_189200.1 identified by similarity to EGAD:107782 YP_189201.1 identified by similarity to EGAD:107783 YP_189204.1 identified by match to protein family HMM PF00589; match to protein family HMM PF02899 YP_189205.1 identified by match to protein family HMM PF01551; match to protein family HMM TIGR01760 YP_189210.1 identified by similarity to OMNI:NTL02SA1962 YP_189213.1 identified by similarity to EGAD:18887; match to protein family HMM PF04688; match to protein family HMM TIGR01592 YP_189214.1 identified by match to protein family HMM PF00657 YP_189215.1 identified by match to protein family HMM PF01520; match to protein family HMM PF05257 YP_189219.1 identified by match to protein family HMM PF00746; match to protein family HMM TIGR01167 YP_189220.1 identified by similarity to OMNI:NTL01SA1925 YP_189222.1 modulates transcription in response to the NADH/NAD(+) redox state YP_189223.1 identified by match to protein family HMM PF00005 YP_189225.1 identified by match to protein family HMM PF00488 YP_189226.1 in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity YP_189227.1 identified by match to protein family HMM PF00583; match to protein family HMM TIGR01575 YP_189228.1 identified by match to protein family HMM PF00814 YP_189229.1 identified by match to protein family HMM PF02367; match to protein family HMM TIGR00150 YP_189230.1 catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis YP_189231.1 identified by similarity to SP:P37251; match to protein family HMM PF00205; match to protein family HMM PF02775; match to protein family HMM PF02776; match to protein family HMM TIGR00118 YP_189232.1 with IlvI catalyzes the formation of 2-acetolactate from pyruvate, this subunit subunit is required for full activity and valine sensitivity; also known as acetolactate synthase small YP_189233.1 catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis YP_189234.1 catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis YP_189235.1 catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis YP_189236.1 dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate YP_189237.1 catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D YP_189238.1 catalyzes the formation of 2-oxobutanoate from L-threonine; biosynthetic YP_189240.1 identified by match to protein family HMM PF03926 YP_189241.1 identified by similarity to EGAD:101821; match to protein family HMM PF00575 YP_189242.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma B is not essential for sporulation; rather it is required for maximal expression of ctc and csbA which are transcribed in the early stationary phase under conditions inimical to sporulation; induced by heat shock, salt stress, oxidative stress, glucose limitation, oxygen limitation and entry into stationary phase YP_189243.1 binds to sigma-B preventing the formation of an RNA polymerase holoenzyme YP_189244.1 identified by similarity to EGAD:18426; match to protein family HMM PF01740; match to protein family HMM TIGR00377 YP_189245.1 identified by similarity to GP:1729794 YP_189246.1 identified by match to protein family HMM PF02452 YP_189247.1 identified by similarity to OMNI:SA2059 YP_189248.1 identified by match to protein family HMM PF00842; match to protein family HMM PF01168; match to protein family HMM TIGR00492 YP_189249.1 Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids YP_189250.1 identified by match to protein family HMM PF03703 YP_189251.1 identified by match to protein family HMM PF03703 YP_189252.1 identified by match to protein family HMM PF03703 YP_189253.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271 YP_189254.1 identified by similarity to EGAD:108108; match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM TIGR01143 YP_189255.1 D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli YP_189256.1 identified by match to protein family HMM PF01098 YP_189257.1 identified by similarity to OMNI:SA2076 YP_189258.1 identified by similarity to OMNI:SA2077 YP_189259.1 identified by similarity to OMNI:SA2078; match to protein family HMM PF02583 YP_189260.1 identified by match to protein family HMM PF00614 YP_189261.1 identified by match to protein family HMM PF01966 YP_189262.1 identified by match to protein family HMM PF02096 YP_189263.1 Condenses 4-methyl-5-(beta-hydroxyethyl)-thiazole monophosphate and 4-amino-5-hydroxymethyl pyrimidine pyrophosphate to form thiamine monophosphate YP_189264.1 catalyzes the formation of 4-methyl-5-(2-phosphoethyl)-thiazole and ADP from 4-methyl-5-(2-hydroxyethyl)-thiazole and ATP YP_189265.1 catalyzes the formation of 4-amino-2-methyl-5-diphosphomethylpyrimidine YP_189266.1 identified by match to protein family HMM PF03070 YP_189267.1 identified by similarity to GP:2735513 YP_189268.1 identified by similarity to EGAD:17778; match to protein family HMM PF00436; match to protein family HMM TIGR00621 YP_189269.1 identified by similarity to OMNI:SA2090 YP_189270.1 in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP YP_189271.1 adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active YP_189273.1 part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane YP_189274.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit YP_189275.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit YP_189276.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit YP_189277.1 Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex YP_189278.1 produces ATP from ADP in the presence of a proton gradient across the membrane; subunit B is part of the membrane proton channel YP_189279.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0 YP_189280.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0 YP_189281.1 identified by match to protein family HMM PF02350; match to protein family HMM TIGR00236 YP_189282.1 Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate YP_189283.1 catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate YP_189284.1 identified by match to protein family HMM PF04260; match to protein family HMM TIGR01440 YP_189285.1 identified by similarity to EGAD:30369; match to protein family HMM PF01451 YP_189286.1 identified by match to protein family HMM PF01300; match to protein family HMM PF03481; match to protein family HMM TIGR00057 YP_189288.1 identified by match to protein family HMM TIGR00536 YP_189289.1 recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2 YP_189290.1 catalyzes the formation of thymidine 5'-phosphate from thymidine YP_189291.1 RpmE2; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster do not have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome YP_189292.1 An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes YP_189293.1 identified by match to protein family HMM PF00171 YP_189294.1 RTD; identified by match to protein family HMM PF02371 YP_189295.1 adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active YP_189296.1 catalyzes the formation of glycerone phosphate and glyceraldehyde 3-phosphate from fructose 1,6, bisphosphate; induced by anaerobic conditions in Bacillus subtilis YP_189297.1 identified by similarity to OMNI:NTL01SA2005 YP_189298.1 CTP synthase; CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer YP_189299.1 participates in both the initiation and recycling phases of transcription; in the presence of the delta subunit, RNAP displays an increased specificity of transcription, a decreased affinity for nucleic acids, and an increased efficiency of RNA synthesis because of enhanced recycling YP_189300.1 identified by match to protein family HMM PF00583 YP_189301.1 catalyzes the formation of (R)-4'-phosphopantothenate from (R)-pantothenate in coenzyme A biosynthesis; type II pantothenate kinases are not regulated by feedback inhibition by coenzyme A YP_189302.1 identified by similarity to OMNI:SA2123 YP_189303.1 identified by similarity to OMNI:SA2124 YP_189304.1 identified by match to protein family HMM PF01546; match to protein family HMM TIGR01891 YP_189305.1 catalyzes the hydrolysis of S-ribosylhomocysteine to homocysteine and autoinducer-2 YP_189306.1 identified by similarity to GP:14247908 YP_189307.1 catalyzes the transfer of phosphate between the C1 and C5 carbons of pentose YP_189308.1 Catalyzes the reversible phosphorolysis of pyrimidines in the nucleotide synthesis salvage pathway YP_189309.1 catalyzes the formation of D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-D-ribose-5-phosphate YP_189311.1 catalyzes the reversible phosphorolysis of ribonucleosides and 2'- deoxyribonucleosides to the free base and (2'-deoxy)ribose-1- phosphate YP_189312.1 identified by match to protein family HMM PF00210; match to protein family HMM PF02047 YP_189313.1 identified by similarity to OMNI:SA2132 YP_189314.1 identified by similarity to OMNI:NTL01SA2020 YP_189315.1 identified by similarity to OMNI:SA2134 YP_189316.1 identified by similarity to EGAD:14340; match to protein family HMM PF01238; match to protein family HMM TIGR00218 YP_189318.1 identified by similarity to OMNI:NTL01SA2023 YP_189319.1 identified by similarity to OMNI:SA2137; match to protein family HMM PF01022 YP_189320.1 identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297 YP_189321.1 identified by similarity to EGAD:165239; match to protein family HMM PF00149 YP_189323.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR00099; match to protein family HMM TIGR01483; match to protein family HMM TIGR01484 YP_189324.1 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source YP_189326.1 catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate YP_189328.1 identified by match to protein family HMM PF02457; match to protein family HMM TIGR00159 YP_189330.1 identified by match to protein family HMM TIGR00711 YP_189331.1 identified by similarity to OMNI:SA2158 YP_189333.1 identified by similarity to EGAD:38000; match to protein family HMM PF03006; match to protein family HMM TIGR01065 YP_189334.1 identified by match to protein family HMM PF01704 YP_189335.1 identified by match to protein family HMM PF04307 YP_189336.1 identified by similarity to GP:14247946 YP_189337.1 iron regulated; catalyzes the release of heme from hemoglobin allowing bacterial pathogens to use the host heme as an iron source YP_189339.1 identified by match to protein family HMM PF01032 YP_189340.1 identified by similarity to GP:9743645; match to protein family HMM PF01032 YP_189341.1 identified by match to protein family HMM PF01497 YP_189342.1 identified by similarity to OMNI:NTL01SA2063; match to protein family HMM PF01168 YP_189343.1 identified by similarity to OMNI:SA2169; match to protein family HMM PF04183 YP_189345.1 identified by similarity to OMNI:NTL01SA2066; match to protein family HMM PF04183 YP_189346.1 identified by similarity to EGAD:40949; match to protein family HMM PF03780 YP_189347.1 identified by similarity to OMNI:SA2174 YP_189348.1 identified by similarity to OMNI:NTL01SA2069 YP_189349.1 identified by match to protein family HMM PF00107 YP_189350.1 identified by match to protein family HMM PF00107 YP_189352.1 catalyzes the formation of 6-phospho-galactose from a 6-phospho-beta-galactoside YP_189353.1 identified by similarity to EGAD:15299; match to protein family HMM PF02302; match to protein family HMM PF02378; match to protein family HMM TIGR00394; match to protein family HMM TIGR00410; match to protein family HMM TIGR00850; match to protein family HMM TIGR00853 YP_189354.1 identified by similarity to SP:P23532; match to protein family HMM PF02255; match to protein family HMM TIGR00823 YP_189355.1 catalyzes the reversible reaction of dihydroxyacetone phosphate with glyceraldehyde 3-phosphate to produce tagatose 1,6-bisphosphate; in Streptococcus pyogenes there are two paralogs of tagatose-bisphosphate aldolase, encoded by lacD1 and lacD2; expression of lacD1 is highly regulated by environmental conditions while lacD2 specializes in an efficient utilization of carbohydrate sources YP_189356.1 catalyzes the formation of tagatose 1,6-bisphosphate from tagatose 6-phosphate and ATP YP_189357.1 catalyzes the interconversion of galactose 6-phosphate to tagatose 6-phosphate YP_189358.1 catalyzes the interconversion of galactose 6-phosphate to tagatose 6-phosphate; tagatose pathway for galactose utilization YP_189359.1 identified by similarity to SP:P16644; match to protein family HMM PF00455 YP_189360.1 Modulates the activities of several enzymes which are inactive in their acetylated form YP_189361.1 forms a direct contact with the tRNA during translation YP_189362.1 in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit YP_189363.1 mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability YP_189364.1 identified by match to protein family HMM PF02361 YP_189365.1 with CbiNQ forms the ABC transporter for cobalt import; Staphylococcus has two adjacent copies of this gene YP_189366.1 with CbiNQ forms the ABC transporter for cobalt import; Staphylococcus has two adjacent copies of this gene YP_189367.1 is a component of the macrolide binding site in the peptidyl transferase center YP_189368.1 catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme YP_189369.1 located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3 YP_189370.1 located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA YP_189371.1 smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif YP_189372.1 stimulates the activities of the other two initiation factors, IF-2 and IF-3 YP_189373.1 essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP YP_189374.1 forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase YP_189375.1 late assembly protein YP_189376.1 L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7 YP_189377.1 located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance YP_189378.1 binds 5S rRNA along with protein L5 and L25 YP_189379.1 ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance YP_189380.1 binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit YP_189381.1 located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group appear to contain the zinc-binding motif YP_189382.1 part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13 YP_189383.1 assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel YP_189384.1 binds to the 23S rRNA between the centers for peptidyl transferase and GTPase YP_189385.1 primary binding protein; helps mediate assembly; involved in translation fidelity YP_189386.1 one of the stabilizing components for the large ribosomal subunit YP_189387.1 located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e YP_189388.1 forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation YP_189389.1 binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center YP_189390.1 protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA YP_189391.1 one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation YP_189392.1 binds third domain of 23S rRNA and protein L29; part of exit tunnel YP_189393.1 L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA YP_189394.1 binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin YP_189395.1 NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex YP_189397.1 identified by similarity to OMNI:SA2241 YP_189398.1 identified by match to protein family HMM PF00860 YP_189399.1 decatenates replicating daughter chromosomes YP_189402.1 identified by similarity to EGAD:23230; match to protein family HMM PF00106; match to protein family HMM PF00678 YP_189403.1 identified by similarity to OMNI:NTL01SA2143; match to protein family HMM PF03547 YP_189404.1 identified by similarity to OMNI:NTL01SA2144 YP_189405.1 identified by similarity to OMNI:SA2251 YP_189406.1 identified by match to protein family HMM PF00873 YP_189407.1 identified by similarity to GP:6492111; match to protein family HMM PF02388 YP_189408.1 identified by similarity to OMNI:NTL01SA2149 YP_189409.1 identified by match to protein family HMM PF01047 YP_189410.1 identified by match to protein family HMM PF00083 YP_189411.1 identified by match to protein family HMM TIGR01889 YP_189412.1 identified by similarity to EGAD:15818; match to protein family HMM PF01444; match to protein family HMM PF04055 YP_189413.1 in Escherichia coli MobA links a guanosine 5'-phosphate to molydopterin to form molybdopterin guanine dinucleotide during molybdenum cofactor biosynthesis YP_189414.1 identified by match to protein family HMM PF02597; match to protein family HMM TIGR01682 YP_189415.1 identified by match to protein family HMM PF02391 YP_189416.1 identified by similarity to EGAD:107851; match to protein family HMM PF03205; match to protein family HMM TIGR00176 YP_189417.1 identified by match to protein family HMM PF00994; match to protein family HMM PF03453; match to protein family HMM PF03454; match to protein family HMM TIGR00177 YP_189418.1 MoaC; along with MoaA is involved in conversion of a guanosine derivative into molybdopterin precursor Z; involved in molybdenum cofactor biosynthesis YP_189419.1 identified by match to protein family HMM PF00994; match to protein family HMM TIGR00177 YP_189420.1 identified by match to protein family HMM PF00899; match to protein family HMM PF05237 YP_189421.1 identified by match to protein family HMM PF00005 YP_189422.1 identified by similarity to SP:P09834; match to protein family HMM PF00528 YP_189423.1 identified by match to protein family HMM PF01547; match to protein family HMM PF03697; match to protein family HMM TIGR01256 YP_189424.1 identified by match to protein family HMM PF00583 YP_189425.1 identified by match to protein family HMM PF02632 YP_189426.1 identified by match to protein family HMM PF01156 YP_189427.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770 YP_189429.1 identified by match to protein family HMM PF03253 YP_189430.1 UreA, with UreB and UreC catalyzes the hydrolysis of urea into ammonia and carbon dioxide; nickel metalloenzyme; accessory proteins UreD, UreE, UreF, and UreG are necessary for assembly of the metallocenter YP_189431.1 ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori and Yersinia enterocolitica the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 UreC (alpha) and 3 UreAB (gamma/beta); in Staphylococcus saprophyticus plays a role in bladder invasiveness and may induce the formation of kidney and bladder stones due to the alkalization of urine YP_189432.1 ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 ureC (alpha) and 3 ureAB (gamma/beta) subunits YP_189433.1 involved in the assembly of the urease metallocenter; possible nickel donor YP_189434.1 identified by similarity to EGAD:8726; match to protein family HMM PF01730 YP_189435.1 identified by similarity to EGAD:6421; match to protein family HMM PF01495; match to protein family HMM TIGR00101 YP_189436.1 identified by similarity to EGAD:7142; match to protein family HMM PF01774 YP_189437.1 identified by similarity to EGAD:42500; match to protein family HMM TIGR01889 YP_189438.1 identified by similarity to OMNI:NTL01SA2181 YP_189439.1 identified by similarity to OMNI:NTL01SA2182; match to protein family HMM TIGR01889 YP_189440.1 identified by match to protein family HMM PF00165 YP_189441.1 identified by match to protein family HMM PF05257 YP_189442.1 identified by similarity to SP:P27611; match to protein family HMM PF03553; match to protein family HMM TIGR00931 YP_189443.1 identified by match to protein family HMM PF02317 YP_189444.1 identified by similarity to OMNI:NTL01SA2188 YP_189445.1 identified by match to protein family HMM PF05257 YP_189447.1 identified by similarity to SP:P30743; match to protein family HMM PF00893 YP_189448.1 identified by match to protein family HMM PF00893 YP_189449.1 Catalyzes the reduction of hydroxypyruvate to form D-glycerate, using NADH as an electron donor YP_189450.1 identified by match to protein family HMM PF01360 YP_189452.1 identified by match to protein family HMM PF01832 YP_189454.1 identified by match to protein family HMM PF03816; match to protein family HMM TIGR00350 YP_189455.1 identified by match to protein family HMM PF00459 YP_189457.1 identified by match to protein family HMM PF02517 YP_189458.1 identified by similarity to OMNI:SA2307 YP_189459.1 identified by similarity to GP:14245957 YP_189460.1 catalyzes the cleavage of the lactyl ether moiety of N-acetylmuramic acid-6-phosphate (MurNAc-6-P) to form N-acetylglucosamine-6-phosphate (GlcNAc-6-P) and lactate; involved in MurNAc dissimilation pathway YP_189461.1 identified by match to protein family HMM PF00367; match to protein family HMM PF02378 YP_189462.1 identified by match to protein family HMM PF01380; match to protein family HMM PF01418 YP_189463.1 identified by match to protein family HMM PF00324 YP_189465.1 identified by similarity to OMNI:SA2310 YP_189467.1 identified by similarity to OMNI:SA2312 YP_189468.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509 YP_189469.1 identified by similarity to OMNI:SA2315 YP_189470.1 identified by match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826 YP_189471.1 identified by match to protein family HMM PF01380; match to protein family HMM PF01418 YP_189472.1 RTD; identified by match to protein family HMM PF02371 YP_189473.1 identified by similarity to OMNI:SA2318; match to protein family HMM PF05146 YP_189474.1 identified by similarity to EGAD:15401; match to protein family HMM PF03553 YP_189475.1 identified by similarity to OMNI:SA2320 YP_189476.1 identified by similarity to OMNI:NTL01SA2551 YP_189477.1 identified by match to protein family HMM PF00106; match to protein family HMM PF00678 YP_189478.1 identified by match to protein family HMM PF01546; match to protein family HMM TIGR01891 YP_189479.1 catalyzes the formation of glutamate and formamide from N-formimidoyl-L-glutamate YP_189480.1 identified by match to protein family HMM PF02517 YP_189484.1 catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway YP_189485.1 identified by similarity to OMNI:NTL01SA2222; match to protein family HMM PF03473; match to protein family HMM PF03475 YP_189486.1 identified by similarity to EGAD:7416; match to protein family HMM PF01263 YP_189487.1 catalyzes the phosphorylation of ribulose to ribulose 5-phosphate YP_189490.1 identified by match to protein family HMM PF02245; match to protein family HMM TIGR00567 YP_189492.1 identified by similarity to OMNI:NTL01SA1804 YP_189493.1 identified by match to protein family HMM PF03551 YP_189494.1 identified by match to protein family HMM PF03616; match to protein family HMM TIGR00210 YP_189495.1 catalyzes the isomerization of isopentenyl pyrophosphate to dimethylallyl diphosphate YP_189496.1 identified by match to protein family HMM PF01544; match to protein family HMM TIGR00383 YP_189497.1 identified by similarity to OMNI:SA2343 YP_189498.1 identified by similarity to OMNI:NTL01SA2234 YP_189502.1 identified by match to protein family HMM TIGR00711 YP_189504.1 identified by match to protein family HMM PF00440 YP_189505.1 identified by match to protein family HMM PF00083; match to protein family HMM TIGR00710 YP_189507.1 identified by similarity to OMNI:SA2353; match to protein family HMM PF01047 YP_189508.1 identified by match to protein family HMM PF02698 YP_189509.1 identified by match to protein family HMM PF00005 YP_189510.1 identified by match to protein family HMM PF02687 YP_189511.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_189512.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_189513.1 malate dehydrogenase; catalyzes the oxidation of malate to oxaloacetate YP_189514.1 identified by match to protein family HMM PF00534 YP_189515.1 identified by similarity to EGAD:8633; match to protein family HMM PF02652; match to protein family HMM TIGR00795 YP_189516.1 identified by match to protein family HMM PF04464 YP_189518.1 identified by similarity to GP:5924067; match to protein family HMM PF00535; match to protein family HMM PF04464 YP_189519.1 identified by match to protein family HMM PF00583 YP_189520.1 identified by similarity to EGAD:15882; match to protein family HMM PF00107 YP_189521.1 identified by match to protein family HMM PF00583 YP_189522.1 identified by similarity to OMNI:SA2371 YP_189523.1 identified by match to protein family HMM PF01544 YP_189524.1 identified by similarity to EGAD:18969; match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826 YP_189525.1 identified by similarity to GP:14248152 YP_189528.1 identified by match to protein family HMM PF00165 YP_189529.1 identified by similarity to EGAD:107318 YP_189530.1 identified by similarity to OMNI:SA2381 YP_189532.1 identified by similarity to EGAD:19948; match to protein family HMM PF00375 YP_189534.1 identified by match to protein family HMM PF00881 YP_189535.1 identified by match to protein family HMM PF01047 YP_189536.1 identified by similarity to EGAD:30454; match to protein family HMM PF00083 YP_189537.1 identified by similarity to EGAD:24916; match to protein family HMM PF00072; match to protein family HMM PF00196 YP_189538.1 identified by similarity to EGAD:18568; match to protein family HMM PF02518 YP_189540.1 identified by similarity to EGAD:30704; match to protein family HMM PF02665; match to protein family HMM TIGR00351 YP_189541.1 identified by similarity to EGAD:30705; match to protein family HMM PF02613; match to protein family HMM TIGR00684 YP_189542.1 identified by match to protein family HMM PF00037; match to protein family HMM TIGR01660 YP_189543.1 identified by similarity to EGAD:30702; match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM TIGR01580 YP_189544.1 identified by similarity to GP:4433641; match to protein family HMM PF00590; match to protein family HMM TIGR01469 YP_189545.1 identified by similarity to EGAD:30823; match to protein family HMM PF00355 YP_189546.1 identified by similarity to EGAD:30822; match to protein family HMM PF00070; match to protein family HMM PF01077; match to protein family HMM PF03460; match to protein family HMM PF04324 YP_189548.1 identified by similarity to GP:4433637 YP_189550.1 identified by match to protein family HMM PF00496 YP_189551.1 identified by similarity to GP:8918792 YP_189552.1 identified by match to protein family HMM PF00583 YP_189553.1 identified by match to protein family HMM PF01226 YP_189554.1 identified by similarity to OMNI:SA2402; match to protein family HMM PF05146 YP_189557.1 identified by match to protein family HMM PF02388 YP_189558.1 identified by similarity to GP:8918792 YP_189559.1 identified by similarity to EGAD:33113; match to protein family HMM PF00005 YP_189560.1 identified by similarity to EGAD:28090; match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_189561.1 identified by similarity to SP:P42199; match to protein family HMM PF00497 YP_189562.1 identified by similarity to OMNI:SA2414 YP_189563.1 2,3-bisphosphoglycerate-dependent; catalyzes the interconversion of 2-phosphoglycerate to 3-phosphoglycerate YP_189564.1 identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297 YP_189565.1 identified by match to protein family HMM PF04138 YP_189566.1 identified by similarity to OMNI:SA1738 YP_189567.1 identified by similarity to EGAD:22488; match to protein family HMM PF00872 YP_189568.1 identified by similarity to SP:P23524; match to protein family HMM PF02595; match to protein family HMM TIGR00045 YP_189570.1 identified by similarity to SP:P28246; match to protein family HMM PF00083; match to protein family HMM TIGR00710 YP_189571.1 identified by similarity to OMNI:NTL01SA2319 YP_189572.1 identified by similarity to OMNI:SA2440; match to protein family HMM PF00149; match to protein family HMM PF02549 YP_189573.1 identified by match to protein family HMM PF00324 YP_189574.1 identified by match to protein family HMM PF00324 YP_189575.1 identified by similarity to GP:9246437; match to protein family HMM PF00144 YP_189577.1 identified by match to protein family HMM PF02096 YP_189578.1 ketopantoate reductase; catalyzes the NADPH reduction of ketopantoate to pantoate; functions in pantothenate (vitamin B5) biosynthesis YP_189579.1 identified by match to protein family HMM PF00083 YP_189580.1 identified by similarity to EGAD:42940; match to protein family HMM PF02518 YP_189581.1 identified by similarity to EGAD:42941; match to protein family HMM PF00072; match to protein family HMM PF04397 YP_189582.1 negatively regulates murein hydrolase activity YP_189583.1 in conjunction with LrgA this protein inhibits the expression or activity of extracellular murein hydrolases YP_189584.1 identified by similarity to EGAD:109206; match to protein family HMM PF00528 YP_189585.1 identified by similarity to EGAD:109190; match to protein family HMM PF04069 YP_189586.1 identified by similarity to EGAD:109210; match to protein family HMM PF00528 YP_189587.1 identified by similarity to EGAD:109212; match to protein family HMM PF00005; match to protein family HMM PF00571; match to protein family HMM TIGR01186 YP_189588.1 identified by match to protein family HMM PF00107 YP_189590.1 identified by match to protein family HMM PF00324 YP_189591.1 identified by match to protein family HMM PF00135 YP_189592.1 identified by match to protein family HMM PF00083 YP_189593.1 identified by similarity to EGAD:91417; match to protein family HMM PF03649; match to protein family HMM TIGR00245 YP_189594.1 identified by match to protein family HMM PF00005 YP_189595.1 identified by similarity to OMNI:SA2306 YP_189596.1 identified by match to protein family HMM PF02517 YP_189597.1 identified by match to protein family HMM PF01645 YP_189599.1 identified by match to protein family HMM PF05343 YP_189601.1 identified by match to protein family HMM PF00106; match to protein family HMM PF00678 YP_189602.1 identified by match to protein family HMM PF02541 YP_189603.1 catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate YP_189604.1 catalyzes the formation of L-ornithine from N(2)-acetyl-L-ornithine YP_189605.1 identified by match to protein family HMM PF00106 YP_189606.1 identified by similarity to OMNI:SA2489 YP_189607.1 identified by similarity to OMNI:SA2491 YP_189608.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271 YP_189609.1 identified by match to protein family HMM PF00293 YP_189610.1 identified by match to protein family HMM PF00534 YP_189611.1 identified by match to protein family HMM PF00408; match to protein family HMM PF02878; match to protein family HMM PF02879; match to protein family HMM PF02880 YP_189612.1 identified by similarity to EGAD:16704; match to protein family HMM PF00483; match to protein family HMM TIGR01099 YP_189613.1 identified by similarity to EGAD:19179; match to protein family HMM PF02447; match to protein family HMM TIGR00791 YP_189614.1 identified by similarity to EGAD:30308; match to protein family HMM PF00370; match to protein family HMM PF02782; match to protein family HMM TIGR01314 YP_189615.1 identified by similarity to EGAD:17516; match to protein family HMM PF00392 YP_189616.1 identified by similarity to EGAD:8163; match to protein family HMM PF00083; match to protein family HMM TIGR00712; match to protein family HMM TIGR00881 YP_189617.1 identified by match to protein family HMM PF00376 YP_189619.1 identified by similarity to SP:P22862 YP_189620.1 identified by match to protein family HMM PF01569 YP_189621.1 identified by similarity to OMNI:SA2518; match to protein family HMM PF04607 YP_189622.1 identified by similarity to EGAD:108077 YP_189624.1 identified by similarity to OMNI:NTL01HSA00233; match to protein family HMM PF02619; match to protein family HMM PF03992 YP_189625.1 identified by match to protein family HMM PF00083 YP_189626.1 identified by similarity to EGAD:22506 YP_189627.1 identified by match to protein family HMM PF01266 YP_189628.1 identified by similarity to EGAD:143246; match to protein family HMM PF02597; match to protein family HMM TIGR01683 YP_189629.1 functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate YP_189630.1 identified by match to protein family HMM PF00899; match to protein family HMM PF05237 YP_189631.1 identified by match to protein family HMM PF00597 YP_189632.1 identified by similarity to EGAD:37656 YP_189633.1 identified by match to protein family HMM PF00999 YP_189635.1 identified by similarity to OMNI:SA2528 YP_189636.1 identified by match to protein family HMM PF00171 YP_189637.1 identified by match to protein family HMM PF01297 YP_189638.1 identified by match to protein family HMM PF00583 YP_189639.1 identified by match to protein family HMM PF00903 YP_189640.1 identified by similarity to EGAD:15875; match to protein family HMM PF00171 YP_189642.1 identified by match to protein family HMM PF00881 YP_189643.1 catalyzes the formation of pyruvate from lactate YP_189644.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR00099; match to protein family HMM TIGR01483; match to protein family HMM TIGR01484 YP_189645.1 identified by similarity to GP:5726436; match to protein family HMM PF04203; match to protein family HMM TIGR01076 YP_189646.1 identified by match to protein family HMM PF00583 YP_189648.1 identified by similarity to GP:8918792 YP_189650.1 identified by similarity to EGAD:154938; match to protein family HMM PF03313; match to protein family HMM TIGR00718 YP_189651.1 identified by similarity to SP:P33074; match to protein family HMM PF03315; match to protein family HMM TIGR00719 YP_189652.1 identified by similarity to EGAD:33437 YP_189655.1 identified by similarity to EGAD:108807; match to protein family HMM PF00370; match to protein family HMM PF02782; match to protein family HMM TIGR01312 YP_189656.1 identified by similarity to EGAD:19594; match to protein family HMM PF00294 YP_189657.1 cytoplasmic mutarotase that catalyzes the conversion between beta-pyran and beta-furan forms of D-ribose; RbsD is required for efficient ribose utilization in E. coli; rbsD-mutant E. coli strains are unable to use ribose as a sole carbon source YP_189659.1 identified by similarity to EGAD:45768; match to protein family HMM PF01019 YP_189661.1 identified by similarity to EGAD:20151 YP_189662.1 identified by similarity to EGAD:14793 YP_189665.1 identified by similarity to OMNI:SA2549 YP_189666.1 identified by similarity to EGAD:108622; match to protein family HMM PF02588 YP_189668.1 identified by similarity to EGAD:21839; match to protein family HMM PF00107 YP_189669.1 identified by match to protein family HMM PF02517 YP_189670.1 identified by match to protein family HMM PF00358; match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR00830 YP_189671.1 catalyzes the formation of acetyl phosphate from pyruvate YP_189672.1 identified by similarity to OMNI:NTL01SA2425; match to protein family HMM PF04172 YP_189673.1 identified by similarity to OMNI:SA2554; match to protein family HMM PF03788 YP_189674.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_189675.1 identified by similarity to OMNI:NTL01SA2428 YP_189676.1 identified by match to protein family HMM PF05257 YP_189677.1 identified by similarity to EGAD:9852; match to protein family HMM PF00368; match to protein family HMM TIGR00532 YP_189678.1 identified by match to protein family HMM PF01154; match to protein family HMM TIGR01835 YP_189679.1 identified by match to protein family HMM PF01035; match to protein family HMM TIGR00589 YP_189681.1 identified by similarity to GP:14248323 YP_189682.1 identified by match to protein family HMM PF02421; match to protein family HMM TIGR00231; match to protein family HMM TIGR00437 YP_189683.1 identified by match to protein family HMM PF04023 YP_189684.1 catalyzes the conversion of 1-proline-5-carboxylate dehydrogenase to L-glutamate YP_189685.1 identified by match to protein family HMM PF00106; match to protein family HMM PF00678 YP_189687.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525 YP_189688.1 identified by match to protein family HMM PF00403; match to protein family HMM TIGR00003 YP_189689.1 catalyzes the formation of pyruvate from lactate YP_189690.1 identified by match to protein family HMM PF00155 YP_189692.1 identified by similarity to GP:8886398; match to protein family HMM PF05257 YP_189693.1 identified by match to protein family HMM PF01757 YP_189696.1 identified by match to protein family HMM PF03976 YP_189698.1 identified by match to protein family HMM PF00324 YP_189699.1 identified by similarity to OMNI:NTL01SA2473; match to protein family HMM PF03881 YP_189700.1 catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors YP_189702.1 identified by similarity to GP:8918792 YP_189703.1 identified by match to protein family HMM PF02677 YP_189704.1 identified by similarity to OMNI:NTL01SA2241 YP_189706.1 Converts L-aspartate to beta-alanine and provides the major route of beta-alanine production in bacteria. Beta-alanine is essential for the biosynthesis of pantothenate (vitamin B5) YP_189707.1 catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine YP_189708.1 catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate YP_189709.1 catalyzes the formation of 2-dehydropantoate from (R)-pantoate YP_189710.1 identified by similarity to EGAD:17067; match to protein family HMM PF03306; match to protein family HMM TIGR01252 YP_189711.1 catalyzes the formation of 2-acetolactate from pyruvate in stationary phase YP_189712.1 identified by similarity to SP:P13714; match to protein family HMM PF00056; match to protein family HMM PF02866; match to protein family HMM TIGR01771 YP_189713.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_189714.1 identified by match to protein family HMM PF00324 YP_189715.1 catalyzes the formation of succinate semialdehyde and glutamate from 4-aminobutanoate and 2-oxoglutarate YP_189721.1 identified by similarity to EGAD:7958; match to protein family HMM PF00070; match to protein family HMM PF02852 YP_189722.1 catalyzes the formation of glycerone phosphate and D-glyceraldehyde 3-phosphate from D-fructose 1,6-bisphosphate in glycolysis YP_189724.1 malate dehydrogenase; catalyzes the oxidation of malate to oxaloacetate YP_189725.1 identified by similarity to OMNI:NTL01BH1376; match to protein family HMM PF03618 YP_189726.1 catalyzes the formation of phosphoenolpyruvate from pyruvate YP_189728.1 identified by similarity to EGAD:18603; match to protein family HMM PF00501 YP_189729.1 identified by similarity to OMNI:NTL01SA2502; match to protein family HMM PF03992 YP_189730.1 identified by similarity to OMNI:SA2626 YP_189731.1 identified by match to protein family HMM PF01546; match to protein family HMM TIGR01891 YP_189732.1 catalyzes the oxidation of choline to betaine aldehyde and betain aldehyde to glycine betaine YP_189733.1 identified by similarity to EGAD:97843; match to protein family HMM PF00171; match to protein family HMM TIGR01804 YP_189734.1 identified by similarity to OMNI:NTL01SA2506 YP_189735.2 identified by match to protein family HMM PF02028; match to protein family HMM TIGR00842 YP_189736.1 functions in anaerobic transport of C4-dicarboxylate compounds such as fumarate; similar to dcuB YP_189738.1 identified by match to protein family HMM PF02143 YP_189739.1 Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates YP_189741.1 converts ATP and adenylyl sulfate to ADP and 3'-phosphoadenylyl sulfate; in Escherichia coli this enzyme functions in cysteine biosynthesis YP_189742.1 ATP sulfurylase; ATPS; converts ATP and sulfate to 5'phosphosulfate and pyrophosphate; in some organisms this enzyme is involved in the incorporation of inorganic sulfate while in others it is involved in the production of ATP in the reverse direction; the enzyme from Thermus thermophilus is dimeric and binds a zinc ion that is coordinated by cysteine and histidine residues that are not found in all related proteins but is found in some thermophilic organisms YP_189743.1 identified by similarity to EGAD:108052; match to protein family HMM PF01925 YP_189744.1 catalyzes the formation of siroheme from precorrin-2 YP_189745.1 identified by similarity to EGAD:15084; match to protein family HMM PF00590; match to protein family HMM TIGR01469 YP_189746.1 hemoprotein; NADPH dependent; with the alpha subunit (a flavoprotein) catalyzes the reduction of sulfite to sulfide YP_189747.1 identified by similarity to SP:P38038; match to protein family HMM PF00175; match to protein family HMM PF00258; match to protein family HMM PF00667; match to protein family HMM TIGR01931 YP_189748.1 identified by similarity to EGAD:108231; match to protein family HMM PF01507; match to protein family HMM TIGR00434 YP_189750.1 identified by similarity to EGAD:45646; match to protein family HMM PF00255 YP_189751.1 identified by match to protein family HMM PF00070; match to protein family HMM PF02852 YP_189752.1 identified by match to protein family HMM PF01047 YP_189754.1 identified by similarity to OMNI:NTL01SA0238 YP_189757.1 uncharacterized member of the SSS superfamily of sodium-dependent solute transporters; unknown function YP_189758.1 identified by similarity to OMNI:NTL01SA0989 YP_189759.1 identified by match to protein family HMM PF02687 YP_189760.1 identified by match to protein family HMM PF00005 YP_189761.1 identified by match to protein family HMM PF02518 YP_189762.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_189764.1 identified by match to protein family HMM PF00245 YP_189766.1 identified by match to protein family HMM PF04464 YP_189767.1 identified by similarity to OMNI:SA2649 YP_189768.1 identified by similarity to EGAD:108772 YP_189771.1 identified by similarity to OMNI:NTL01SA2594 YP_189772.1 identified by match to protein family HMM PF00294 YP_189773.1 identified by match to protein family HMM PF02133 YP_189774.1 identified by match to protein family HMM PF03747 YP_189775.1 identified by match to protein family HMM PF00582 YP_189776.1 identified by match to protein family HMM PF03596; match to protein family HMM TIGR00779 YP_189777.1 identified by similarity to EGAD:7403; match to protein family HMM PF01022 YP_189780.1 identified by match to protein family HMM PF01022 YP_189783.1 identified by similarity to EGAD:164435 YP_189785.1 identified by match to protein family HMM PF00083 YP_189786.1 identified by match to protein family HMM PF00126 YP_189788.1 identified by similarity to GP:14020893 YP_189791.1 identified by similarity to EGAD:37318; match to protein family HMM PF01797 YP_189793.1 identified by similarity to EGAD:20234; match to protein family HMM PF00205; match to protein family HMM PF02775; match to protein family HMM PF02776 YP_189796.1 identified by similarity to GP:7453518; match to protein family HMM PF00756 YP_189798.1 identified by similarity to EGAD:21315; match to protein family HMM PF00324; match to protein family HMM TIGR00905 YP_189800.1 catalyzes the formation of ornithine and carbamylphosphate from citrulline in the arginine catabolic pathway YP_189801.1 catalyzes the degradation of arginine to citruline and ammonia YP_189802.1 identified by similarity to EGAD:124606; match to protein family HMM PF02863 YP_189803.1 identified by similarity to EGAD:16884; match to protein family HMM PF01447; match to protein family HMM PF02868 YP_189804.1 dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica. YP_189805.1 identified by similarity to PIR:G90071 YP_189806.1 identified by similarity to OMNI:NTL01SA1369 YP_189808.1 identified by similarity to GP:5777659; match to protein family HMM PF00106; match to protein family HMM PF00678 YP_189809.1 identified by similarity to GP:1778753 YP_189810.1 identified by match to protein family HMM PF00359; match to protein family HMM PF00874 YP_189811.1 identified by match to protein family HMM PF00359; match to protein family HMM PF02378; match to protein family HMM PF02379; match to protein family HMM TIGR00829; match to protein family HMM TIGR00848; match to protein family HMM TIGR01427 YP_189812.1 identified by similarity to EGAD:14340; match to protein family HMM PF01238; match to protein family HMM TIGR00218 YP_189813.1 identified by similarity to SP:P49022 YP_189814.1 identified by match to protein family HMM PF01832; match to protein family HMM PF05257 YP_189816.1 identified by similarity to SP:O68390; match to protein family HMM PF02566 YP_189819.1 identified by similarity to GP:8918792 YP_189820.1 identified by similarity to OMNI:NTL01SA2547 YP_189821.1 identified by match to protein family HMM PF00083 YP_189822.1 identified by similarity to OMNI:NTL01SA2550 YP_189823.1 this stereospecific enzymes reduces the S isomer of methionine sulfoxide while MsrB reduces the R form; a fusion protein of this enzyme with MsrB provides protection against oxidative stress in Neisseria gonorrhoeae YP_189824.1 identified by similarity to EGAD:107653 YP_189825.1 identified by similarity to OMNI:NTL01SA2539 YP_189826.1 identified by match to protein family HMM PF00534 YP_189827.1 functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; in some organisms, especially gram positive pathogens, have paralogs that have been found to be nonessential but do function in secretion of a subset of exported proteins YP_189828.1 identified by similarity to OMNI:NTL01SA2543 YP_189829.1 identified by similarity to OMNI:NTL01SA2544 YP_189830.1 forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase YP_189831.1 identified by match to protein family HMM PF05345 YP_189833.1 identified by match to protein family HMM PF00528 YP_189834.1 identified by match to protein family HMM PF00528 YP_189835.1 identified by match to protein family HMM PF00005 YP_189838.1 identified by match to protein family HMM PF00149; match to protein family HMM PF01009; match to protein family HMM PF02872 YP_189842.1 identified by similarity to OMNI:SA2688; match to protein family HMM PF00440 YP_189843.1 predicted polysaccharide polymerase involved in biofilm formation; required for the synthesis of the beta-1,6-N-acetylglucosamine polysaccharide; PgaC; in Yersinia the HmsR protein is an inner membrane protein YP_189844.1 identified by similarity to GP:2914128 YP_189845.1 identified by match to protein family HMM PF01522 YP_189846.1 identified by match to protein family HMM PF01757 YP_189847.1 identified by similarity to GP:2981225; match to protein family HMM PF04650; match to protein family HMM TIGR01168 YP_189849.1 identified by match to protein family HMM PF00797 YP_189850.1 catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribosyl)-ATP and the subsequent formation of 1-(5-phosphoribosyl)-5-((5- phosphoribosylamino)methylideneamino)imidazole-4- carboxamide from 1-(5-phosphoribosyl)-AMP in histidine biosynthesis YP_189851.1 catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase YP_189852.1 catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-hosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide YP_189853.1 with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide YP_189854.1 catalyzes the dehydration of D-erythro-1-(imidazol-4-yl)glycerol 3-phosphate to 3-(imidazol-4-yl)-2-oxopropyl phosphate in histidine biosynthesis YP_189855.1 catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer YP_189856.1 short form of enzyme; requires HisZ for function; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms heteromultimer of HisG and HisZ YP_189857.1 May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine YP_189858.1 identified by similarity to OMNI:NTL01BH0425 YP_189859.1 identified by match to protein family HMM PF01037 YP_189860.1 identified by match to protein family HMM PF00583 YP_189861.1 malate dehydrogenase; catalyzes the oxidation of malate to oxaloacetate YP_189863.1 identified by similarity to OMNI:SA2711; match to protein family HMM PF04264 YP_189864.1 identified by similarity to GP:6441050; match to protein family HMM PF03758 YP_189865.1 identified by match to protein family HMM PF00581 YP_189866.1 identified by similarity to EGAD:42780; match to protein family HMM PF01470; match to protein family HMM TIGR00504 YP_189869.1 identified by match to protein family HMM PF02028; match to protein family HMM TIGR00842 YP_189873.1 Catalyzes the transfer of acetyl from acetyldihydrolipoamide to coenzyme A to form acetyl CoA YP_189874.1 identified by similarity to SP:O34591; match to protein family HMM PF02779; match to protein family HMM PF02780 YP_189875.1 identified by similarity to SP:P27745; match to protein family HMM PF00676 YP_189876.1 identified by match to protein family HMM PF00070; match to protein family HMM PF02852; match to protein family HMM TIGR01350 YP_189877.1 identified by match to protein family HMM PF00939; match to protein family HMM TIGR00785 YP_189879.1 identified by similarity to EGAD:28994 YP_189880.1 identified by match to protein family HMM PF00892; match to protein family HMM TIGR00688 YP_189881.1 identified by similarity to OMNI:SA0406 YP_189882.1 identified by similarity to OMNI:VCA0786 YP_189883.1 identified by match to protein family HMM PF00083; match to protein family HMM TIGR00879 YP_189885.1 identified by similarity to SP:Q02510; match to protein family HMM PF04650; match to protein family HMM TIGR01168 YP_189886.1 identified by match to protein family HMM PF01648 YP_189887.1 identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM TIGR01733; match to protein family HMM TIGR01746 YP_189888.1 identified by similarity to OMNI:NTL01TV0222 YP_189889.1 identified by match to protein family HMM TIGR00711 YP_189891.1 identified by similarity to GP:1856977 YP_189892.1 identified by similarity to OMNI:SA0709; match to protein family HMM PF03610 YP_189893.1 identified by match to protein family HMM PF02734 YP_189894.1 with DhaL and DhaM forms dihydroxyacetone kinase, which is responsible for phosphorylating dihydroxyacetone; DhaK is the dihydroxyacetone binding subunit of the dihydroxyacetone kinase YP_189895.1 forms dimers and octamers; involved in conversion of glycerol to dihydroxy-acetone YP_189896.1 catalyzes the formation of biotin from dethiobiotin and sulfur 2 S-adenosyl-L-methionine YP_189897.1 catalyzes resistance to fosfomycin by the addition of a thiol cofactor YP_189898.1 identified by similarity to OMNI:SA1099 YP_189899.1 catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation YP_189900.1 catalyzes the reversible synthesis of carbamate and ATP from carbamoyl phosphate and ADP YP_189901.1 identified by match to protein family HMM PF03606 YP_189902.1 identified by similarity to GP:7453518; match to protein family HMM PF00756 YP_189903.1 identified by similarity to EGAD:109206; match to protein family HMM PF00528 YP_189904.1 identified by similarity to EGAD:109208; match to protein family HMM PF04069 YP_189905.1 identified by similarity to EGAD:109210; match to protein family HMM PF00528 YP_189906.1 identified by similarity to EGAD:109212; match to protein family HMM PF00005; match to protein family HMM PF00571; match to protein family HMM TIGR01186 YP_189907.1 identified by similarity to OMNI:SA2343 YP_189908.1 identified by match to protein family HMM PF00725; match to protein family HMM PF02737 YP_189909.1 identified by similarity to GP:9951711; match to protein family HMM PF05853 YP_189910.1 identified by match to protein family HMM PF00440 YP_189911.1 identified by match to protein family HMM PF05525; match to protein family HMM TIGR00796 YP_189912.1 dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica. YP_189913.1 identified by similarity to SP:O68575; match to protein family HMM PF02143; match to protein family HMM PF04055 YP_189914.1 identified by similarity to SP:P09373; match to protein family HMM PF01228; match to protein family HMM PF02901; match to protein family HMM TIGR01255 YP_189916.1 identified by similarity to EGAD:10112; match to protein family HMM PF00005 YP_189917.1 identified by similarity to EGAD:24096; match to protein family HMM PF00005 YP_189918.1 identified by similarity to EGAD:128691; match to protein family HMM PF00528 YP_189919.1 identified by similarity to GP:5457576; match to protein family HMM PF00528 YP_189920.1 identified by similarity to EGAD:165398; match to protein family HMM PF00496 YP_189921.1 identified by similarity to OMNI:NTL01SA2353 YP_189922.1 identified by similarity to OMNI:SA2478 YP_189926.1 identified by match to protein family HMM PF00005 YP_189927.1 identified by match to protein family HMM PF00106; match to protein family HMM PF00678 YP_189928.1 identified by match to protein family HMM PF00083 YP_189929.1 identified by similarity to EGAD:16535; match to protein family HMM PF00724; match to protein family HMM PF00890; match to protein family HMM PF04205; match to protein family HMM TIGR01813 YP_189930.1 identified by match to protein family HMM PF02424 YP_189931.1 identified by match to protein family HMM PF01297 YP_189932.1 identified by similarity to OMNI:NTL01SA2469 YP_189933.1 identified by similarity to EGAD:7439 YP_189934.1 identified by match to protein family HMM PF02492 YP_189935.1 identified by similarity to GP:3789932; match to protein family HMM PF04650; match to protein family HMM TIGR01168 YP_189937.1 identified by similarity to OMNI:SA1056; match to protein family HMM PF05543 YP_189938.1 identified by similarity to OMNI:SA1971 YP_189939.1 identified by match to protein family HMM PF00746; match to protein family HMM PF00801; match to protein family HMM PF04650; match to protein family HMM PF05345; match to protein family HMM TIGR01167; match to protein family HMM TIGR01168 YP_189940.1 catalyzes the formation of pimeloyl-CoA from pimelate and coenzyme A YP_189941.1 identified by match to protein family HMM PF00155; match to protein family HMM PF00222 YP_189942.1 identified by similarity to EGAD:45704; match to protein family HMM PF00202; match to protein family HMM TIGR00508 YP_189943.1 identified by similarity to SP:P22818; match to protein family HMM PF01656; match to protein family HMM TIGR00347 YP_189944.1 identified by similarity to GP:3212079; match to protein family HMM PF05480 YP_189945.1 identified by match to protein family HMM PF00746; match to protein family HMM PF04650; match to protein family HMM TIGR01167; match to protein family HMM TIGR01168 YP_189947.1 identified by similarity to GP:3212079; match to protein family HMM PF05480 YP_189948.1 identified by match to protein family HMM PF00089 YP_189952.1 identified by match to protein family HMM PF02518 YP_189953.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00165 YP_189954.1 identified by similarity to OMNI:NTL01SA0223; match to protein family HMM PF04140 YP_189956.1 identified by match to protein family HMM PF00106; match to protein family HMM PF00678 YP_189957.1 malate dehydrogenase; catalyzes the oxidation of malate to oxaloacetate YP_189958.1 identified by similarity to OMNI:NTL01SA0092; match to protein family HMM PF01207 YP_189959.1 identified by similarity to GP:13491619 YP_189963.1 identified by similarity to OMNI:NTL01SA2360 YP_189966.1 identified by similarity to OMNI:SA0433; match to protein family HMM PF00924 YP_189967.1 identified by match to protein family HMM PF04507; match to protein family HMM TIGR01742 YP_189968.1 identified by match to protein family HMM PF04507; match to protein family HMM TIGR01742 YP_189970.1 identified by match to protein family HMM PF03773 YP_189971.1 identified by match to protein family HMM PF01022 YP_189973.1 identified by similarity to SP:O50593; match to protein family HMM PF02374; match to protein family HMM TIGR00345 YP_189974.1 identified by similarity to EGAD:10168; match to protein family HMM PF01022 YP_189975.1 identified by match to protein family HMM PF02040; match to protein family HMM TIGR00935 YP_189976.1 catalyzes the reduction of arsenate to arsenite; also can dephosphorylate tyrosine phosphorylated proteins, aryl phosphates, and acyl phosphates YP_189977.1 identified by similarity to GP:7592615; match to protein family HMM PF01925 YP_189978.1 identified by similarity to OMNI:SA0048; match to protein family HMM PF02583 YP_189979.1 identified by match to protein family HMM PF00581; match to protein family HMM PF01206 YP_189980.1 identified by match to protein family HMM PF00581; match to protein family HMM PF00753 YP_189983.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525 YP_189987.1 identified by match to protein family HMM PF04507; match to protein family HMM TIGR01742 YP_189989.1 identified by match to protein family HMM PF04507; match to protein family HMM TIGR01742 YP_189990.1 identified by similarity to GP:4587882 YP_189991.1 identified by match to protein family HMM PF04507; match to protein family HMM TIGR01742 YP_189992.1 identified by similarity to OMNI:NTL01SA2367 YP_189993.1 identified by similarity to OMNI:SA2495 YP_189994.1 identified by match to protein family HMM PF04507; match to protein family HMM TIGR01742 YP_189996.1 identified by similarity to OMNI:SA2497; match to protein family HMM PF04507; match to protein family HMM TIGR01742 YP_189998.1 identified by similarity to EGAD:161071; match to protein family HMM TIGR01877 YP_190000.1 identified by match to protein family HMM PF03787; match to protein family HMM TIGR01899 YP_190001.1 identified by similarity to EGAD:160971; match to protein family HMM PF03757; match to protein family HMM TIGR01903 YP_190002.1 identified by similarity to EGAD:161002; match to protein family HMM PF03787; match to protein family HMM TIGR01867 YP_190003.1 identified by similarity to EGAD:165031; match to protein family HMM TIGR01870 YP_190004.1 identified by similarity to OMNI:MT2890; match to protein family HMM TIGR01871; match to protein family HMM TIGR01872 YP_190005.1 identified by similarity to OMNI:NTL01SPL0813; match to protein family HMM TIGR01573 YP_190006.1 identified by similarity to GP:12721471; match to protein family HMM TIGR00287 YP_190008.1 identified by match to protein family HMM PF04507; match to protein family HMM TIGR01742 YP_190010.1 identified by similarity to OMNI:NTL01SA0058 YP_190011.1 identified by similarity to GP:14021030 YP_190012.1 identified by match to protein family HMM PF00107 YP_190013.1 identified by match to protein family HMM PF00583 YP_190015.1 identified by match to protein family HMM PF02384; match to protein family HMM PF02506; match to protein family HMM TIGR00497 YP_190017.1 identified by similarity to EGAD:10320; match to protein family HMM PF04313; match to protein family HMM TIGR00348 YP_190018.1 identified by similarity to GP:4894349 YP_190022.1 identified by similarity to OMNI:NTL01SA0084; match to protein family HMM PF00069 YP_190023.1 identified by similarity to OMNI:NTL01SA0083 YP_190024.1 identified by similarity to GP:7594749 YP_190025.1 identified by similarity to GP:7594750 YP_190026.1 identified by similarity to GP:14245843 YP_190027.1 identified by similarity to OMNI:NTL01SA0078 YP_190028.1 one of the components of the high-affinity ATP-driven potassium transport (or KDP)system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions; the C subunit may be involved in assembly of the KDP complex YP_190029.1 one of the components of the high-affinity ATP-driven potassium transport (or KDP) system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions YP_190030.1 catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions YP_190032.1 identified by similarity to EGAD:18674; match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM PF02702 YP_190033.1 identified by similarity to EGAD:91700; match to protein family HMM PF00072; match to protein family HMM PF00486 YP_190034.1 identified by match to protein family HMM PF03606 YP_190036.1 identified by similarity to OMNI:NTL01SA0065 YP_190037.1 identified by similarity to OMNI:NTL01SA0064 YP_190038.1 identified by similarity to OMNI:NTL01SA0063 YP_190040.1 identified by similarity to OMNI:NTL01SA0062; match to protein family HMM PF00239 YP_190041.1 identified by similarity to OMNI:NTL01SA0061; match to protein family HMM PF00239 YP_190043.1 identified by similarity to OMNI:NTL01SA0060 YP_190045.1 identified by similarity to OMNI:NTL01SA0059 YP_190046.1 identified by similarity to OMNI:NTL01SA0058 YP_190047.1 identified by match to protein family HMM PF04002 YP_190048.1 identified by similarity to EGAD:7942; match to protein family HMM PF00589; match to protein family HMM PF02899 YP_190049.1 identified by similarity to EGAD:8390; match to protein family HMM PF00589; match to protein family HMM PF02899 YP_190050.1 identified by similarity to EGAD:6135 YP_190051.1 identified by similarity to EGAD:9921; match to protein family HMM PF01909 YP_190052.1 identified by similarity to EGAD:8703; match to protein family HMM PF00398 YP_190055.1 identified by match to protein family HMM PF01925 YP_190056.1 identified by similarity to GP:14020990; match to protein family HMM PF02583 YP_190057.1 identified by match to protein family HMM PF00581; match to protein family HMM PF01206 YP_190058.1 identified by similarity to GP:14020995; match to protein family HMM PF00480 YP_190059.1 identified by similarity to GP:14020996 YP_190060.1 identified by similarity to EGAD:6173; match to protein family HMM PF03965 YP_190061.1 identified by similarity to EGAD:8249; match to protein family HMM PF00144; match to protein family HMM PF00905; match to protein family HMM PF05569 YP_190062.1 identified by similarity to EGAD:16370; match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM PF05223 YP_190063.1 identified by match to protein family HMM PF01575 YP_190064.1 identified by match to protein family HMM PF03009 YP_190065.1 identified by similarity to OMNI:SA0030 YP_190066.1 identified by similarity to GP:9937361 YP_190067.1 identified by similarity to OMNI:SA0028; match to protein family HMM PF00665 YP_190068.1 identified by similarity to OMNI:SA0027 YP_190069.1 identified by similarity to OMNI:NTL01SA0026 YP_190070.1 SPOUT methyltransferase; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA YP_190071.1 identified by match to protein family HMM PF00753 YP_190072.1 identified by similarity to OMNI:SA0022 YP_190073.1 identified by similarity to GP:6689208 YP_190074.1 identified by similarity to OMNI:SA0020; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229 YP_190075.1 identified by similarity to OMNI:SA0019; match to protein family HMM PF00072; match to protein family HMM PF00486 YP_190077.1 catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis YP_190078.1 identified by similarity to EGAD:21924; match to protein family HMM PF00772; match to protein family HMM PF03796; match to protein family HMM TIGR00665 YP_190079.1 in Escherichia coli this protein is wrapped around the base of the L1 stalk YP_190080.1 identified by match to protein family HMM PF01368; match to protein family HMM PF02272 YP_190081.1 identified by similarity to OMNI:NTL01SA0014 YP_190083.1 identified by similarity to OMNI:NTL01SA0012 YP_190084.1 identified by match to protein family HMM PF03591 YP_190085.1 identified by similarity to OMNI:SA2003; match to protein family HMM PF03372 YP_190086.1 catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_190088.1 identified by match to protein family HMM PF01256; match to protein family HMM TIGR00196 YP_190089.1 identified by similarity to SP:P20831; match to protein family HMM PF00521; match to protein family HMM PF03989; match to protein family HMM TIGR01063 YP_190090.1 identified by similarity to SP:P20832; match to protein family HMM PF00204; match to protein family HMM PF00986; match to protein family HMM PF01751; match to protein family HMM PF02518; match to protein family HMM TIGR01059 YP_190091.1 Required for DNA replication; binds preferentially to single-stranded, linear DNA YP_190092.1 identified by similarity to OMNI:SA0003 YP_190093.1 binds the polymerase to DNA and acts as a sliding clamp YP_190094.1 binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself. YP_187530.1 identified by similarity to GP:7532833; match to protein family HMM PF04394 YP_187531.1 identified by similarity to OMNI:SA0028; match to protein family HMM PF00665 YP_187532.1 identified by similarity to SP:P00807; match to protein family HMM PF00144 YP_187533.1 identified by similarity to SP:P18357; match to protein family HMM PF00144; match to protein family HMM PF00905; match to protein family HMM PF05569 YP_187534.1 identified by similarity to EGAD:13370; match to protein family HMM PF03965 YP_187535.1 identified by match to protein family HMM PF00239; match to protein family HMM PF02796 YP_187537.1 identified by similarity to OMNI:SA0028; match to protein family HMM PF00665 YP_187539.1 identified by similarity to EGAD:5713; match to protein family HMM PF01636 YP_187540.1 identified by similarity to GP:12957030; match to protein family HMM PF00583 YP_187541.1 identified by similarity to GP:12957029; match to protein family HMM PF04439 YP_187544.1 identified by similarity to GP:12957027; match to protein family HMM PF01909 YP_187545.1 identified by match to protein family HMM PF00440 YP_187546.1 identified by similarity to OMNI:NTL01LL0262 YP_187547.1 identified by match to protein family HMM PF00005 YP_187548.1 identified by similarity to GP:3676414 YP_187549.1 identified by similarity to OMNI:SA0028; match to protein family HMM PF00665 YP_187550.1 identified by similarity to OMNI:SA0028; match to protein family HMM PF00665 YP_187551.1 identified by match to protein family HMM PF01051 YP_187552.1 identified by match to protein family HMM PF00582 YP_187553.1 identified by match to protein family HMM PF00916 YP_187554.1 identified by similarity to GP:14475518; match to protein family HMM PF00239 YP_187556.1 identified by match to protein family HMM PF05713 YP_187558.1 identified by similarity to EGAD:5979; match to protein family HMM PF03432 YP_187561.1 identified by similarity to EGAD:40155