-- dump date 20140620_075517 -- class Genbank::Feature -- table feature -- table main -- field 1 id -- field 2 type -- field 3 name -- field 4 contig -- field 5 start_pos -- field 6 end_pos -- field 7 strand -- field 8 description -- field 9 chrom_position -- field 10 organism -- field 11 GeneID -- header -- id type name contig start_pos end_pos strand description chrom_position organism GeneID 451515000001 SEQ_END SEQ_END NC_007790.1 3125 3125 DR NC_007790.1; contig end 3125..3125 Staphylococcus aureus subsp. aureus USA300_FPR3757 451515000002 SEQ_END SEQ_END NC_007791.1 4439 4439 DR NC_007791.1; contig end 4439..4439 Staphylococcus aureus subsp. aureus USA300_FPR3757 451515000003 SEQ_END SEQ_END NC_007792.1 37136 37136 DR NC_007792.1; contig end 37136..37136 Staphylococcus aureus subsp. aureus USA300_FPR3757 451515000004 SEQ_END SEQ_END NC_007793.1 2872769 2872769 DR NC_007793.1; contig end 2872769..2872769 Staphylococcus aureus subsp. aureus USA300_FPR3757 YP_492679.1 CDS SAUSA300_pUSA010001 NC_007790.1 1 996 D identified by match to protein family HMM PF01446; replication protein 1..996 Staphylococcus aureus subsp. aureus USA300_FPR3757 3912719 YP_492680.1 CDS SAUSA300_pUSA010002 NC_007790.1 1348 1464 D hypothetical protein 1348..1464 Staphylococcus aureus subsp. aureus USA300_FPR3757 3912718 YP_492681.1 CDS SAUSA300_pUSA010003 NC_007790.1 1546 1767 D identified by similarity to GB:BAB78430.1; hypothetical protein 1546..1767 Staphylococcus aureus subsp. aureus USA300_FPR3757 3912721 YP_492682.1 CDS SAUSA300_pUSA010004 NC_007790.1 2093 2674 R hypothetical protein complement(2093..2674) Staphylococcus aureus subsp. aureus USA300_FPR3757 3912720 YP_492683.1 CDS SAUSA300_pUSA010005 NC_007790.1 2749 2922 D hypothetical protein 2749..2922 Staphylococcus aureus subsp. aureus USA300_FPR3757 3912717 YP_492684.1 CDS SAUSA300_pUSA020001 NC_007791.1 36 1415 D identified by similarity to SP:P23054; match to protein family HMM PF07690; tetracycline resistance protein 36..1415 Staphylococcus aureus subsp. aureus USA300_FPR3757 3912723 YP_492685.1 CDS SAUSA300_pUSA020002 NC_007791.1 1601 2842 D identified by similarity to SP:P03864; match to protein family HMM PF01076; plasmid recombination enzyme 1601..2842 Staphylococcus aureus subsp. aureus USA300_FPR3757 3912724 YP_492686.1 CDS SAUSA300_pUSA020003 NC_007791.1 3369 4313 D identified by match to protein family HMM PF02486; replication initiation protein 3369..4313 Staphylococcus aureus subsp. aureus USA300_FPR3757 3912722 YP_492687.1 CDS repA NC_007792.1 101 1060 D identified by match to protein family HMM PF06970; replication initiator protein 101..1060 Staphylococcus aureus subsp. aureus USA300_FPR3757 3912737 YP_492688.1 CDS SAUSA300_pUSA030002 NC_007792.1 1179 1853 D identified by match to protein family HMM PF00665; IS431mec-like transposase 1179..1853 Staphylococcus aureus subsp. aureus USA300_FPR3757 3912725 YP_492689.1 CDS ileS NC_007792.1 2162 5236 D IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 2 subfamily; some organisms carry two different copies of this enzyme; in some organisms, the type 2 subfamily is associated with resistance to the antibiotic pseudomonic acid (mupirocin); isoleucyl-tRNA synthetase 2162..5236 Staphylococcus aureus subsp. aureus USA300_FPR3757 3912750 YP_492690.1 CDS SAUSA300_pUSA030004 NC_007792.1 5306 5704 D hypothetical protein in ileS 3'region (ORF C), see GenBank Accession X75439; hypothetical protein 5306..5704 Staphylococcus aureus subsp. aureus USA300_FPR3757 3912747 YP_492691.1 CDS SAUSA300_pUSA030005 NC_007792.1 5734 6408 D identified by match to protein family HMM PF00665; transposase 5734..6408 Staphylococcus aureus subsp. aureus USA300_FPR3757 3912727 YP_492692.1 CDS SAUSA300_pUSA030006 NC_007792.1 6681 7157 D identified by match to protein family HMM PF05732; replication and maintenance protein 6681..7157 Staphylococcus aureus subsp. aureus USA300_FPR3757 3912731 YP_492693.1 CDS ermC NC_007792.1 7865 8599 D identified by match to protein family HMM PF00398; rRNA adenine N-6-methyltransferase (macrolide-lincosamide-streptogramin B resistance protein) 7865..8599 Staphylococcus aureus subsp. aureus USA300_FPR3757 3912746 YP_492694.1 CDS SAUSA300_pUSA030008 NC_007792.1 8896 9570 D identified by match to protein family HMM PF00665; transposase 8896..9570 Staphylococcus aureus subsp. aureus USA300_FPR3757 3912739 YP_492695.1 CDS SAUSA300_pUSA030009 NC_007792.1 9679 9867 R putative regulator of transfer genes ArtA complement(9679..9867) Staphylococcus aureus subsp. aureus USA300_FPR3757 3912726 YP_492696.1 CDS traA NC_007792.1 10039 11013 D transfer complex protein TraA 10039..11013 Staphylococcus aureus subsp. aureus USA300_FPR3757 3912735 YP_492697.1 CDS traB NC_007792.1 11030 11347 D transfer complex protein TraB 11030..11347 Staphylococcus aureus subsp. aureus USA300_FPR3757 3912742 YP_492698.1 CDS traC NC_007792.1 11407 11814 D identified by similarity to GB:AAC61955.1; membrane protein TraC 11407..11814 Staphylococcus aureus subsp. aureus USA300_FPR3757 3912752 YP_492699.1 CDS traD NC_007792.1 11798 12484 D hypothetical protein 11798..12484 Staphylococcus aureus subsp. aureus USA300_FPR3757 3912756 YP_492700.1 CDS traE NC_007792.1 12505 14517 D transfer complex protein TraE 12505..14517 Staphylococcus aureus subsp. aureus USA300_FPR3757 3912751 YP_492701.1 CDS traF NC_007792.1 14529 15809 D transfer complex protein TraF 14529..15809 Staphylococcus aureus subsp. aureus USA300_FPR3757 3912760 YP_492702.1 CDS traG NC_007792.1 15827 16903 D identified by match to protein family HMM PF05257; transfer complex protein TraG 15827..16903 Staphylococcus aureus subsp. aureus USA300_FPR3757 3912758 YP_492703.1 CDS traH NC_007792.1 16913 17398 D identified by similarity to GB:AAC61960.1; transfer complex protein TraH 16913..17398 Staphylococcus aureus subsp. aureus USA300_FPR3757 3912759 YP_492704.1 CDS traI NC_007792.1 17414 19516 D identified by match to protein family HMM PF01131; match to protein family HMM PF01751; match to protein family HMM TIGR01056; transfer complex protein TraI (DNA topoisomerase III) 17414..19516 Staphylococcus aureus subsp. aureus USA300_FPR3757 3912745 YP_492705.1 CDS traJ NC_007792.1 19532 19996 D transfer protein complex TraJ 19532..19996 Staphylococcus aureus subsp. aureus USA300_FPR3757 3912755 YP_492706.1 CDS traK NC_007792.1 19993 21633 D identified by match to protein family HMM PF02534; transfer complex protein TraK 19993..21633 Staphylococcus aureus subsp. aureus USA300_FPR3757 3912754 YP_492707.1 CDS traL NC_007792.1 21711 22628 D transfer complex protein TraL 21711..22628 Staphylococcus aureus subsp. aureus USA300_FPR3757 3912740 YP_492708.1 CDS traM NC_007792.1 22645 23037 D identified by match to protein family HMM PF00436; match to protein family HMM TIGR00621; transfer complex protein TraM 22645..23037 Staphylococcus aureus subsp. aureus USA300_FPR3757 3912748 YP_492709.1 CDS traO NC_007792.1 23094 23261 D transfer complex protein TraO 23094..23261 Staphylococcus aureus subsp. aureus USA300_FPR3757 3912730 YP_492710.1 CDS SAUSA300_pUSA030024 NC_007792.1 23299 23973 D identified by match to protein family HMM PF00665; transposase 23299..23973 Staphylococcus aureus subsp. aureus USA300_FPR3757 3912741 YP_492711.1 CDS SAUSA300_pUSA030025 NC_007792.1 24103 24717 D hypothetical protein 24103..24717 Staphylococcus aureus subsp. aureus USA300_FPR3757 3912753 YP_492712.1 CDS SAUSA300_pUSA030026 NC_007792.1 24786 26057 D hypothetical protein 24786..26057 Staphylococcus aureus subsp. aureus USA300_FPR3757 3912729 YP_492713.1 CDS SAUSA300_pUSA030027 NC_007792.1 26099 26515 R identical to VRA0046 in plasmid pLW1043; hypothetical protein complement(26099..26515) Staphylococcus aureus subsp. aureus USA300_FPR3757 3912749 YP_492714.1 CDS SAUSA300_pUSA030028 NC_007792.1 26735 27367 D identified by match to protein family HMM PF00239; match to protein family HMM PF02796; resolvase 26735..27367 Staphylococcus aureus subsp. aureus USA300_FPR3757 3912728 YP_492715.1 CDS SAUSA300_pUSA030029 NC_007792.1 27649 28428 D hypothetical protein 27649..28428 Staphylococcus aureus subsp. aureus USA300_FPR3757 3912744 YP_492716.1 CDS SAUSA300_pUSA030030 NC_007792.1 28562 30178 D hypothetical protein 28562..30178 Staphylococcus aureus subsp. aureus USA300_FPR3757 3912732 YP_492717.1 CDS SAUSA300_pUSA030031 NC_007792.1 30381 32105 D identical to pSK41 LtrC protein; similar to Lactococcus lactis pRS01 LtrC protein; LtrC-like protein 30381..32105 Staphylococcus aureus subsp. aureus USA300_FPR3757 3912743 YP_492718.1 CDS nes NC_007792.1 33233 34144 R an authenticated frameshift results in a truncated nickase protein; identified by match to protein family HMM PF03389; oriT nickase complement(33233..34144) Staphylococcus aureus subsp. aureus USA300_FPR3757 3912757 YP_492719.1 CDS SAUSA300_pUSA030033 NC_007792.1 34288 34620 D hypothetical protein 34288..34620 Staphylococcus aureus subsp. aureus USA300_FPR3757 3912733 YP_492720.1 CDS SAUSA300_pUSA030034 NC_007792.1 35220 36260 D plasmid segregation protein ParM 35220..36260 Staphylococcus aureus subsp. aureus USA300_FPR3757 3912738 YP_492721.1 CDS SAUSA300_pUSA030035 NC_007792.1 36263 36592 D plasmid segregation protein ParR 36263..36592 Staphylococcus aureus subsp. aureus USA300_FPR3757 3912736 YP_492722.1 CDS SAUSA300_pUSA030036 NC_007792.1 36596 36856 R identified by match to protein family HMM PF01381; hypothetical protein complement(36596..36856) Staphylococcus aureus subsp. aureus USA300_FPR3757 3912734 YP_492723.1 CDS dnaA NC_007793.1 544 1905 D binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosomal replication initiation protein 544..1905 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914438 YP_492724.1 CDS dnaN NC_007793.1 2183 3316 D binds the polymerase to DNA and acts as a sliding clamp; DNA polymerase III subunit beta 2183..3316 Staphylococcus aureus subsp. aureus USA300_FPR3757 3915368 YP_492725.1 CDS SAUSA300_0003 NC_007793.1 3697 3942 D hypothetical protein 3697..3942 Staphylococcus aureus subsp. aureus USA300_FPR3757 3915141 YP_492726.1 CDS recF NC_007793.1 3939 5051 D Required for DNA replication; binds preferentially to single-stranded, linear DNA; recombination protein F 3939..5051 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913963 YP_492727.1 CDS gyrB NC_007793.1 5061 6995 D identified by match to protein family HMM PF00204; match to protein family HMM PF00986; match to protein family HMM PF01751; match to protein family HMM PF02518; match to protein family HMM TIGR01059; DNA gyrase subunit B 5061..6995 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914127 YP_492728.1 CDS gyrA NC_007793.1 7032 9695 D Ser-84->Leu (ciprofloxacin resistant mutation); identified by match to protein family HMM PF00521; match to protein family HMM PF03989; match to protein family HMM TIGR01063; DNA gyrase subunit A 7032..9695 Staphylococcus aureus subsp. aureus USA300_FPR3757 3912939 YP_492729.1 CDS SAUSA300_0007 NC_007793.1 9782 10612 R identified by match to protein family HMM PF01256; match to protein family HMM TIGR00196; hypothetical protein complement(9782..10612) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913362 YP_492730.1 CDS hutH NC_007793.1 10920 12434 D catalyzes the degradation of histidine to urocanate and ammmonia; histidine ammonia-lyase 10920..12434 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913478 YP_492731.1 CDS serS NC_007793.1 12813 14099 D catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase 12813..14099 Staphylococcus aureus subsp. aureus USA300_FPR3757 3915152 YP_492732.1 CDS SAUSA300_0010 NC_007793.1 14749 15444 D identified by match to protein family HMM PF03591; hypothetical protein 14749..15444 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914543 YP_492733.1 CDS SAUSA300_0011 NC_007793.1 15441 15770 D identified by match to protein family HMM PF05437; hypothetical protein 15441..15770 Staphylococcus aureus subsp. aureus USA300_FPR3757 3915192 YP_492734.1 CDS SAUSA300_0012 NC_007793.1 16133 17101 D identified by match to protein family HMM PF00561; putative homoserine O-acetyltransferase 16133..17101 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913034 YP_492735.1 CDS SAUSA300_0013 NC_007793.1 17392 18330 D hypothetical protein 17392..18330 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914950 YP_492736.1 CDS SAUSA300_0014 NC_007793.1 18345 20312 D identified by match to protein family HMM PF01368; match to protein family HMM PF02272; hypothetical protein 18345..20312 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914242 YP_492737.1 CDS rplI NC_007793.1 20309 20755 D in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 20309..20755 Staphylococcus aureus subsp. aureus USA300_FPR3757 3915284 YP_492738.1 CDS dnaB NC_007793.1 20787 22187 D identified by match to protein family HMM PF00772; match to protein family HMM PF03796; match to protein family HMM TIGR00665; replicative DNA helicase 20787..22187 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913283 YP_492739.1 CDS purA NC_007793.1 22465 23748 D catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis; adenylosuccinate synthetase 22465..23748 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914148 YP_492740.1 CDS SAUSA300_0020 NC_007793.1 24952 25653 D identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator 24952..25653 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914546 YP_492741.1 CDS SAUSA300_0021 NC_007793.1 25666 27492 D identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229; sensory box histidine kinase 25666..27492 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914225 YP_492742.1 CDS SAUSA300_0022 NC_007793.1 27536 28819 D identified by match to protein family HMM PF07435; hypothetical protein 27536..28819 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914326 YP_492743.1 CDS SAUSA300_0023 NC_007793.1 28820 29608 D hypothetical protein 28820..29608 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914534 YP_492744.1 CDS SAUSA300_0024 NC_007793.1 29998 30798 D identified by match to protein family HMM PF00753; metallo-beta-lactamase family protein 29998..30798 Staphylococcus aureus subsp. aureus USA300_FPR3757 3915164 YP_492745.1 CDS SAUSA300_0025 NC_007793.1 31026 33344 D identified by match to protein family HMM PF00149; match to protein family HMM PF02872; match to protein family HMM TIGR01167; 5'-nucleotidase family protein 31026..33344 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914033 YP_492746.1 CDS SAUSA300_0026 NC_007793.1 33712 34191 D SPOUT methyltransferase family protein; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA; rRNA large subunit methyltransferase 33712..34191 Staphylococcus aureus subsp. aureus USA300_FPR3757 3915243 YP_492747.1 CDS SAUSA300_0027 NC_007793.1 34513 35769 D hypothetical protein 34513..35769 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914659 YP_492748.1 CDS SAUSA300_0028 NC_007793.1 35877 36551 R identified by match to protein family HMM PF00665; putative transposase complement(35877..36551) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913080 YP_492749.1 CDS SAUSA300_0029 NC_007793.1 36809 36976 D hypothetical protein 36809..36976 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913413 YP_492750.1 CDS SAUSA300_0030 NC_007793.1 37813 38556 D identified by match to protein family HMM PF03009; putative glycerophosphoryl diester phosphodiesterase 37813..38556 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913483 YP_492751.1 CDS SAUSA300_0031 NC_007793.1 38653 39081 D identified by match to protein family HMM PF01575; hypothetical protein 38653..39081 Staphylococcus aureus subsp. aureus USA300_FPR3757 3912964 YP_492752.1 CDS mecA NC_007793.1 39127 41133 R identified by match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM PF05223; penicillin-binding protein 2' complement(39127..41133) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913904 YP_492753.1 CDS SAUSA300_0033 NC_007793.1 41233 42219 D identified by match to protein family HMM PF05569; methicillin-resistance MecR1 regulatory protein 41233..42219 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913613 YP_492754.1 CDS SAUSA300_0035 NC_007793.1 42236 42451 D similar to type I restriction-modification system endonuclease; hypothetical protein 42236..42451 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914509 YP_492755.1 CDS SAUSA300_0034 NC_007793.1 42442 43953 R identified by match to protein family HMM PF01609; IS1272, transposase complement(42442..43953) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913755 YP_492756.1 CDS SAUSA300_0036 NC_007793.1 44101 44607 R identified by match to protein family HMM PF07799; hypothetical protein complement(44101..44607) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913715 YP_492757.1 CDS ccrB NC_007793.1 45892 47520 R identified by match to protein family HMM PF00239; match to protein family HMM PF04606; match to protein family HMM PF07508; cassette chromosome recombinase B complement(45892..47520) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913144 YP_492758.1 CDS ccrA NC_007793.1 47542 48891 R identified by match to protein family HMM PF00239; match to protein family HMM PF07508; cassette chromosome recombinase A complement(47542..48891) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913725 YP_492759.1 CDS SAUSA300_0039 NC_007793.1 49125 50912 R identified by match to protein family HMM PF06048; hypothetical protein complement(49125..50912) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913650 YP_492760.1 CDS SAUSA300_0040 NC_007793.1 50912 51202 R identified by match to protein family HMM PF07205; hypothetical protein complement(50912..51202) Staphylococcus aureus subsp. aureus USA300_FPR3757 3912801 YP_492761.1 CDS SAUSA300_0041 NC_007793.1 51299 52390 D hypothetical protein 51299..52390 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914861 YP_492762.1 CDS SAUSA300_0042 NC_007793.1 53118 54608 D identified by match to protein family HMM PF04326; hypothetical protein 53118..54608 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913218 YP_492763.1 CDS SAUSA300_0043 NC_007793.1 54981 55154 R hypothetical protein complement(54981..55154) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915057 YP_492764.1 CDS SAUSA300_0044 NC_007793.1 55232 56236 R identified by match to protein family HMM PF00753; metallo-beta-lactamase family protein complement(55232..56236) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914865 YP_492765.1 CDS SAUSA300_0045 NC_007793.1 56489 56860 D identified by match to protein family HMM PF01844; HNH endonuclease family protein 56489..56860 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914082 YP_492766.1 CDS SAUSA300_0046 NC_007793.1 56989 57609 D hypothetical protein 56989..57609 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913058 YP_492767.1 CDS SAUSA300_0047 NC_007793.1 59098 60063 D hypothetical protein 59098..60063 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914477 YP_492768.1 CDS SAUSA300_0048 NC_007793.1 60160 60351 D hypothetical protein 60160..60351 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914381 YP_492769.1 CDS SAUSA300_0049 NC_007793.1 60443 60772 D hypothetical protein 60443..60772 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914524 YP_492770.1 CDS SAUSA300_0050 NC_007793.1 60849 61187 R hypothetical protein complement(60849..61187) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913087 YP_492771.1 CDS SAUSA300_0052 NC_007793.1 62607 62789 D hypothetical protein 62607..62789 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914446 YP_492772.1 CDS speG NC_007793.1 63100 63597 R identified by match to protein family HMM PF00583; spermidine N(1)-acetyltransferase complement(63100..63597) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914303 YP_492773.1 CDS SAUSA300_0054 NC_007793.1 63785 63913 R hypothetical protein complement(63785..63913) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913075 YP_492774.1 CDS SAUSA300_0055 NC_007793.1 64125 65222 D alkaliphilic; identified by match to protein family HMM PF00107; alcohol dehydrogenase, zinc-containing 64125..65222 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914409 YP_492775.1 CDS SAUSA300_0056 NC_007793.1 65715 66218 R identified by match to protein family HMM PF07799; hypothetical protein complement(65715..66218) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913187 YP_492776.1 CDS SAUSA300_0057 NC_007793.1 66234 66545 R identified by match to protein family HMM PF06124; hypothetical protein complement(66234..66545) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913739 YP_492777.1 CDS SAUSA300_0058 NC_007793.1 66547 66639 R hypothetical protein complement(66547..66639) Staphylococcus aureus subsp. aureus USA300_FPR3757 3912888 YP_492778.1 CDS SAUSA300_0059 NC_007793.1 66632 66982 R identified by match to protein family HMM PF06106; hypothetical protein complement(66632..66982) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914388 YP_492779.1 CDS SAUSA300_0060 NC_007793.1 67966 68790 D identified by similarity to GB:CAC98906.1; match to protein family HMM PF00665; putative transposase 67966..68790 Staphylococcus aureus subsp. aureus USA300_FPR3757 3915032 YP_492780.1 CDS arcC NC_007793.1 68890 69819 R catalyzes the reversible synthesis of carbamate and ATP from carbamoyl phosphate and ADP; carbamate kinase complement(68890..69819) Staphylococcus aureus subsp. aureus USA300_FPR3757 3912937 YP_492781.1 CDS arcB NC_007793.1 69839 70837 R catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation; ornithine carbamoyltransferase complement(69839..70837) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914770 YP_492782.1 CDS SAUSA300_0063 NC_007793.1 70875 71564 R identified by match to protein family HMM PF00027; cyclic nucleotide-binding domain-containing protein complement(70875..71564) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914944 YP_492783.1 CDS arcD NC_007793.1 71606 73027 R identified by match to protein family HMM PF00324; match to protein family HMM TIGR00905; arginine/oirnithine antiporter complement(71606..73027) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915208 YP_492784.1 CDS arcA NC_007793.1 73113 74348 R catalyzes the degradation of arginine to citruline and ammonia; arginine deiminase complement(73113..74348) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914803 YP_492785.1 CDS argR NC_007793.1 74617 75063 R identified by match to protein family HMM PF02863; arginine repressor complement(74617..75063) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915260 YP_492786.1 CDS SAUSA300_0067 NC_007793.1 75565 75996 D universal stress protein 75565..75996 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913536 YP_492787.1 CDS SAUSA300_0068 NC_007793.1 76073 76225 R identified by similarity to GB:CAB96929.1; cadmium-exporting ATPase, truncation complement(76073..76225) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913774 YP_492788.1 CDS SAUSA300_0070 NC_007793.1 77130 77945 D identified by match to protein family HMM PF00561; putative lysophospholipase 77130..77945 Staphylococcus aureus subsp. aureus USA300_FPR3757 3915380 YP_492789.1 CDS SAUSA300_0071 NC_007793.1 78432 79445 D identified by match to protein family HMM PF02371; ISSep1-like transposase 78432..79445 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914036 YP_492790.1 CDS SAUSA300_0072 NC_007793.1 79759 80397 D hypothetical protein 79759..80397 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914144 YP_492791.1 CDS SAUSA300_0073 NC_007793.1 80394 81947 D identified by similarity to GB:AAU24316.1; match to protein family HMM PF00496; peptide ABC transporter peptide-binding protein 80394..81947 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914664 YP_492792.1 CDS opp-3B NC_007793.1 81950 82906 D identified by match to protein family HMM PF00528; oligopeptide permease, channel-forming protein 81950..82906 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914313 YP_492793.1 CDS opp-3C NC_007793.1 82906 83673 D identified by similarity to GB:AAL94601.1; match to protein family HMM PF00528; oligopeptide permease, channel-forming protein 82906..83673 Staphylococcus aureus subsp. aureus USA300_FPR3757 3912840 YP_492794.1 CDS SAUSA300_0076 NC_007793.1 83640 84407 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 83640..84407 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914824 YP_492795.1 CDS SAUSA300_0077 NC_007793.1 84400 85035 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 84400..85035 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913108 YP_492796.1 CDS copA NC_007793.1 86094 88118 D identified by match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525; ATPase copper transport 86094..88118 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914796 YP_492797.1 CDS SAUSA300_0079 NC_007793.1 88136 88681 D identified by match to protein family HMM PF07563; putative lipoprotein 88136..88681 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913434 YP_492798.1 CDS SAUSA300_0080 NC_007793.1 89207 89299 D hypothetical protein 89207..89299 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913249 YP_492799.1 CDS SAUSA300_0081 NC_007793.1 89446 91197 D hypothetical protein 89446..91197 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914565 YP_492800.1 CDS SAUSA300_0082 NC_007793.1 91291 91743 R hypothetical protein complement(91291..91743) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913981 YP_492801.1 CDS SAUSA300_0083 NC_007793.1 91958 92713 R identified by match to protein family HMM PF01925; hypothetical protein complement(91958..92713) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913969 YP_492802.1 CDS SAUSA300_0084 NC_007793.1 92713 92973 R identified by match to protein family HMM PF02583; hypothetical protein complement(92713..92973) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913845 YP_492803.1 CDS SAUSA300_0085 NC_007793.1 93110 94177 D identified by match to protein family HMM PF00581; match to protein family HMM PF01206; hypothetical protein 93110..94177 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913595 YP_492804.1 CDS SAUSA300_0086 NC_007793.1 94208 95542 D identified by match to protein family HMM PF00581; match to protein family HMM PF00753; hypothetical protein 94208..95542 Staphylococcus aureus subsp. aureus USA300_FPR3757 3915355 YP_492805.1 CDS SAUSA300_0088 NC_007793.1 97021 97122 R hypothetical protein complement(97021..97122) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914359 YP_492806.1 CDS SAUSA300_0089 NC_007793.1 97421 98353 R identified by match to protein family HMM PF01207; hypothetical protein complement(97421..98353) Staphylococcus aureus subsp. aureus USA300_FPR3757 3912861 YP_492807.1 CDS SAUSA300_0090 NC_007793.1 98968 99264 D identified by match to protein family HMM PF04993; hypothetical protein 98968..99264 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914562 YP_492808.1 CDS SAUSA300_0091 NC_007793.1 99336 100556 R identified by match to protein family HMM PF07690; putative permease complement(99336..100556) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914518 YP_492809.1 CDS SAUSA300_0092 NC_007793.1 100549 101010 R hypothetical protein complement(100549..101010) Staphylococcus aureus subsp. aureus USA300_FPR3757 3912904 YP_492810.1 CDS SAUSA300_0093 NC_007793.1 101212 102072 D identified by match to protein family HMM PF00126; match to protein family HMM PF03466; transcriptional regulator 101212..102072 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913036 YP_492811.1 CDS SAUSA300_0094 NC_007793.1 102427 102960 R hypothetical protein complement(102427..102960) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915025 YP_492812.1 CDS SAUSA300_0095 NC_007793.1 103051 103794 D identified by match to protein family HMM PF00126; transcriptional regulator 103051..103794 Staphylococcus aureus subsp. aureus USA300_FPR3757 3912952 YP_492813.1 CDS SAUSA300_0096 NC_007793.1 104228 104830 D hypothetical protein 104228..104830 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913210 YP_492814.1 CDS SAUSA300_0097 NC_007793.1 105097 108249 D hypothetical protein 105097..108249 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914882 YP_492815.1 CDS SAUSA300_0098 NC_007793.1 108306 108788 D hypothetical protein 108306..108788 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913130 YP_492816.1 CDS plc NC_007793.1 108993 109979 D identified by match to protein family HMM PF00388; 1-phosphatidylinositol phosphodiesterase 108993..109979 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913587 YP_492817.1 CDS SAUSA300_0100 NC_007793.1 110200 110970 D identified by match to protein family HMM PF04507; match to protein family HMM TIGR01742; tandem lipoprotein 110200..110970 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914666 YP_492818.1 CDS SAUSA300_0101 NC_007793.1 111022 111792 D identified by match to protein family HMM PF04507; match to protein family HMM TIGR01742; tandem lipoprotein 111022..111792 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913718 YP_492819.1 CDS SAUSA300_0102 NC_007793.1 111856 112626 D identified by match to protein family HMM PF04507; match to protein family HMM TIGR01742; tandem lipoprotein 111856..112626 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914995 YP_492820.1 CDS SAUSA300_0103 NC_007793.1 112693 113460 D identified by match to protein family HMM PF04507; match to protein family HMM TIGR01742; tandem lipoprotein 112693..113460 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913600 YP_492821.1 CDS SAUSA300_0104 NC_007793.1 113593 115791 D identified by match to protein family HMM PF00165; AraC family transcriptional regulator 113593..115791 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913896 YP_492822.1 CDS SAUSA300_0105 NC_007793.1 115942 117120 D identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891; M20/M25/M40 family peptidase 115942..117120 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914102 YP_492823.1 CDS SAUSA300_0106 NC_007793.1 117122 118510 D identified by match to protein family HMM PF07690; putative drug transporter 117122..118510 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913311 YP_492824.1 CDS SAUSA300_0107 NC_007793.1 119003 120664 R identified by match to protein family HMM PF02690; match to protein family HMM TIGR00704; Na/Pi cotransporter family protein complement(119003..120664) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914110 YP_492825.1 CDS SAUSA300_0108 NC_007793.1 120990 122765 R in group A Streptococci this protein was found to cross react with anti myosin antibodies and may play a role in rheumatic fever; myosin-cross-reactive antigen complement(120990..122765) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913572 YP_492826.1 CDS SAUSA300_0109 NC_007793.1 122939 123811 R identified by match to protein family HMM PF00892; integral membrane domain-containing protein complement(122939..123811) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915252 YP_492827.1 CDS SAUSA300_0110 NC_007793.1 123924 125321 D identified by match to protein family HMM PF00155; match to protein family HMM PF00392; GntR family transcriptional regulator 123924..125321 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913961 YP_492828.1 CDS SAUSA300_0111 NC_007793.1 125511 125984 D identified by match to protein family HMM PF07853; hypothetical protein 125511..125984 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914180 YP_492829.1 CDS lctP NC_007793.1 126246 127838 D identified by match to protein family HMM PF02652; match to protein family HMM TIGR00795; L-lactate permease 126246..127838 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913484 YP_492830.1 CDS SAUSA300_0113 NC_007793.1 128167 129693 R identified by match to protein family HMM PF00746; match to protein family HMM PF01476; match to protein family HMM PF02216; match to protein family HMM PF03373; match to protein family HMM PF04650; match to protein family HMM TIGR01167; match to protein family HMM TIGR01168; immunoglobulin G binding protein A complement(128167..129693) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913949 YP_492831.1 CDS SAUSA300_0114 NC_007793.1 130114 130866 R identified by match to protein family HMM PF01047; match to protein family HMM TIGR01889; accessory regulator complement(130114..130866) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914121 YP_492832.1 CDS sirC NC_007793.1 131235 132233 R identified by match to protein family HMM PF01032; iron compound ABC transporter permease SirC complement(131235..132233) Staphylococcus aureus subsp. aureus USA300_FPR3757 3912839 YP_492833.1 CDS sirB NC_007793.1 132230 133225 R identified by match to protein family HMM PF01032; iron compound ABC transporter permease SirB complement(132230..133225) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914429 YP_492834.1 CDS sirA NC_007793.1 133241 134233 R identified by match to protein family HMM PF01497; iron compound ABC transporter iron compound-binding protein SirA complement(133241..134233) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913641 YP_492835.1 CDS SAUSA300_0118 NC_007793.1 134524 135444 D identified by match to protein family HMM PF00291; pyridoxal-phosphate dependent enzyme superfamily protein 134524..135444 Staphylococcus aureus subsp. aureus USA300_FPR3757 3915376 YP_492836.1 CDS SAUSA300_0119 NC_007793.1 135441 136451 D identified by match to protein family HMM PF02423; ornithine cyclodeaminase 135441..136451 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914831 YP_492837.1 CDS sbnC NC_007793.1 136472 138226 D identified by match to protein family HMM PF04183; IucC family siderophore biosynthesis protein 136472..138226 Staphylococcus aureus subsp. aureus USA300_FPR3757 3912949 YP_492838.1 CDS SAUSA300_0121 NC_007793.1 138219 139475 D identified by match to protein family HMM PF07690; putative drug transporter 138219..139475 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913031 YP_492839.1 CDS SAUSA300_0122 NC_007793.1 139465 141201 D identified by match to protein family HMM PF04183; IucA/IucC family siderophore biosynthesis protein 139465..141201 Staphylococcus aureus subsp. aureus USA300_FPR3757 3915328 YP_492840.1 CDS SAUSA300_0123 NC_007793.1 141110 142960 D identified by match to protein family HMM PF04183; IucC family siderophore biosynthesis protein 141110..142960 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913668 YP_492841.1 CDS SAUSA300_0124 NC_007793.1 142935 143711 D identified by match to protein family HMM PF03328; HPCH/HPAI aldolase family protein 142935..143711 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913397 YP_492842.1 CDS SAUSA300_0125 NC_007793.1 143711 144913 D identified by match to protein family HMM PF00278; match to protein family HMM PF02784; pyridoxal-dependent decarboxylase 143711..144913 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913284 YP_492843.1 CDS SAUSA300_0126 NC_007793.1 144917 145681 D identified by match to protein family HMM PF02195; hypothetical protein 144917..145681 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914506 YP_492844.1 CDS SAUSA300_0127 NC_007793.1 145877 146284 D hypothetical protein 145877..146284 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913029 YP_492845.1 CDS SAUSA300_0128 NC_007793.1 146334 146960 D hypothetical protein 146334..146960 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913440 YP_492846.1 CDS SAUSA300_0129 NC_007793.1 147172 147948 D identified by match to protein family HMM PF00106; match to protein family HMM TIGR02415; acetoin reductase 147172..147948 Staphylococcus aureus subsp. aureus USA300_FPR3757 3915195 YP_492847.1 CDS SAUSA300_0130 NC_007793.1 148284 149264 D identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF07993; NAD-dependent epimerase/dehydratase family protein 148284..149264 Staphylococcus aureus subsp. aureus USA300_FPR3757 3915186 YP_492848.1 CDS SAUSA300_0131 NC_007793.1 149227 149919 D identified by match to protein family HMM PF02397; putative sugar transferase 149227..149919 Staphylococcus aureus subsp. aureus USA300_FPR3757 3912953 YP_492849.1 CDS SAUSA300_0132 NC_007793.1 150129 151295 D identified by match to protein family HMM PF00534; glycosyl transferase, group 1 family protein 150129..151295 Staphylococcus aureus subsp. aureus USA300_FPR3757 3912766 YP_492850.1 CDS SAUSA300_0133 NC_007793.1 151276 152514 D identified by match to protein family HMM PF04932; hypothetical protein 151276..152514 Staphylococcus aureus subsp. aureus USA300_FPR3757 3915292 YP_492851.1 CDS SAUSA300_0134 NC_007793.1 152504 153934 D identified by match to protein family HMM PF01943; polysaccharide extrusion protein 152504..153934 Staphylococcus aureus subsp. aureus USA300_FPR3757 3915238 YP_492852.1 CDS SAUSA300_0135 NC_007793.1 154202 154801 D identified by match to protein family HMM PF00081; match to protein family HMM PF02777; Fe/Mn family superoxide dismutase 154202..154801 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913957 YP_492853.1 CDS SAUSA300_0136 NC_007793.1 155169 155894 D identified by match to protein family HMM PF00746; match to protein family HMM TIGR01167; cell wall surface anchor family protein 155169..155894 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913779 YP_492854.1 CDS SAUSA300_0137 NC_007793.1 156086 156841 R identified by match to protein family HMM PF00392; GntR family transcriptional regulator complement(156086..156841) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913094 YP_492855.1 CDS deoD NC_007793.1 157077 157784 D catalyzes the reversible phosphorolysis of ribonucleosides and 2'- deoxyribonucleosides to the free base and (2'-deoxy)ribose-1- phosphate; purine nucleoside phosphorylase 157077..157784 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913848 YP_492856.1 CDS SAUSA300_0139 NC_007793.1 157791 159143 D identified by match to protein family HMM PF07690; putative tetracycline resistance protein 157791..159143 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913972 YP_492857.1 CDS deoC NC_007793.1 159224 159886 D catalyzes the formation of D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-D-ribose-5-phosphate; deoxyribose-phosphate aldolase 159224..159886 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914897 YP_492858.1 CDS deoB NC_007793.1 159914 161092 D catalyzes the transfer of phosphate between the C1 and C5 carbons of pentose; phosphopentomutase 159914..161092 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914325 YP_492859.1 CDS phnE NC_007793.1 161223 162038 R identified by match to protein family HMM PF00528; match to protein family HMM TIGR01097; phosphonate ABC transporter permease complement(161223..162038) Staphylococcus aureus subsp. aureus USA300_FPR3757 3912815 YP_492860.1 CDS phnE NC_007793.1 162035 162835 R identified by match to protein family HMM PF00528; match to protein family HMM TIGR01097; phosphonate ABC transporter permease complement(162035..162835) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913513 YP_492861.1 CDS phnC NC_007793.1 162837 163610 R identified by match to protein family HMM PF00005; match to protein family HMM TIGR02315; phosphonate ABC transporter ATP-binding protein complement(162837..163610) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913195 YP_492862.1 CDS SAUSA300_0145 NC_007793.1 163824 164780 R identified by match to protein family HMM TIGR01098; phosphonate ABC transporter phosphonate-binding protein complement(163824..164780) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913828 YP_492863.1 CDS SAUSA300_0146 NC_007793.1 165009 166553 D hypothetical protein 165009..166553 Staphylococcus aureus subsp. aureus USA300_FPR3757 3915383 YP_492864.1 CDS SAUSA300_0147 NC_007793.1 166604 168139 D identified by match to protein family HMM PF00149; match to protein family HMM PF02872; 5' nucleotidase family protein 166604..168139 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914266 YP_492865.1 CDS SAUSA300_0148 NC_007793.1 168223 168426 D hypothetical protein 168223..168426 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914587 YP_492866.1 CDS adhE NC_007793.1 171207 173816 D identified by match to protein family HMM PF00171; match to protein family HMM PF00465; bifunctional acetaldehyde-CoA/alcohol dehydrogenase 171207..173816 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913550 YP_492867.1 CDS cap5A NC_007793.1 174161 174829 D identified by match to protein family HMM PF02706; match to protein family HMM TIGR01006; capsular polysaccharide biosynthesis protein Cap5A 174161..174829 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913382 YP_492868.1 CDS cap5B NC_007793.1 174845 175531 D identified by match to protein family HMM TIGR01007; capsular polysaccharide biosynthesis protein Cap5B 174845..175531 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914741 YP_492869.1 CDS cap5C NC_007793.1 175534 176298 D identified by match to protein family HMM PF02811; capsular polysaccharide biosynthesis protein Cap5C 175534..176298 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914603 YP_492870.1 CDS cap5E NC_007793.1 178132 179160 D identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF07993; capsular polysaccharide biosynthesis protein Cap5E 178132..179160 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914004 YP_492871.1 CDS cap5F NC_007793.1 179173 180282 D identified by match to protein family HMM PF01370; match to protein family HMM PF07993; capsular polysaccharide biosynthesis protein Cap5F 179173..180282 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914671 YP_492872.1 CDS cap5G NC_007793.1 180286 181410 D identified by match to protein family HMM PF02350; match to protein family HMM TIGR00236; capsular polysaccharide biosynthesis protein Cap5G 180286..181410 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913045 YP_492873.1 CDS cap5H NC_007793.1 181413 182039 D identified by match to protein family HMM PF00132; capsular polysaccharide biosynthesis protein Cap5H 181413..182039 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913287 YP_492874.1 CDS cap5I NC_007793.1 182044 183153 D identified by match to protein family HMM PF00534; capsular polysaccharide biosynthesis protein Cap5I 182044..183153 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914412 YP_492875.1 CDS cap5J NC_007793.1 183167 184333 D identified by match to protein family HMM PF04932; capsular polysaccharide biosynthesis protein Cap5J 183167..184333 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914307 YP_492876.1 CDS cap5K NC_007793.1 184326 185531 D capsular polysaccharide biosynthesis protein Cap5K 184326..185531 Staphylococcus aureus subsp. aureus USA300_FPR3757 3912846 YP_492877.1 CDS cap5L NC_007793.1 185532 186737 D identified by match to protein family HMM PF00534; capsular polysaccharide biosynthesis protein Cap5L 185532..186737 Staphylococcus aureus subsp. aureus USA300_FPR3757 3915198 YP_492878.1 CDS cap5M NC_007793.1 186748 187305 D identified by match to protein family HMM PF02397; capsular polysaccharide biosynthesis protein Cap5M 186748..187305 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914224 YP_492879.1 CDS cap5N NC_007793.1 187305 188192 D identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF07993; capsular polysaccharide biosynthesis protein Cap5N 187305..188192 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914702 YP_492880.1 CDS cap5O NC_007793.1 188246 189508 D identified by match to protein family HMM PF00984; match to protein family HMM PF03720; match to protein family HMM PF03721; capsular polysaccharide biosynthesis protein Cap5O 188246..189508 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913970 YP_492881.1 CDS cap5P NC_007793.1 189555 190730 D identified by match to protein family HMM PF02350; match to protein family HMM PF04007; match to protein family HMM TIGR00236; capsular polysaccharide biosynthesis protein Cap5P 189555..190730 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913118 YP_492882.1 CDS SAUSA300_0168 NC_007793.1 190795 191121 R iron regulated; catalyzes the release of heme from hemoglobin allowing bacterial pathogens to use the host heme as an iron source; heme-degrading monooxygenase IsdI complement(190795..191121) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914489 YP_492883.1 CDS SAUSA300_0169 NC_007793.1 191128 191511 R identified by match to protein family HMM PF04304; hypothetical protein complement(191128..191511) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914874 YP_492884.1 CDS SAUSA300_0170 NC_007793.1 191938 193425 D identified by match to protein family HMM PF00171; aldehyde dehydrogenase 191938..193425 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913223 YP_492885.1 CDS SAUSA300_0171 NC_007793.1 194071 195030 D identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297; cation efflux family protein 194071..195030 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914299 YP_492886.1 CDS SAUSA300_0172 NC_007793.1 195092 195295 R hypothetical protein complement(195092..195295) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913139 YP_492887.1 CDS SAUSA300_0173 NC_007793.1 195474 195986 D hypothetical protein 195474..195986 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913008 YP_492888.1 CDS SAUSA300_0174 NC_007793.1 196328 197068 D identified by match to protein family HMM PF00005; hypothetical protein 196328..197068 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914787 YP_492889.1 CDS SAUSA300_0175 NC_007793.1 197082 198056 D putative lipoprotein 197082..198056 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914560 YP_492890.1 CDS SAUSA300_0176 NC_007793.1 198053 198814 D identified by match to protein family HMM PF00528; ABC transporter permease 198053..198814 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913227 YP_492891.1 CDS SAUSA300_0177 NC_007793.1 198827 199858 D hypothetical protein 198827..199858 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913035 YP_492892.1 CDS SAUSA300_0178 NC_007793.1 200075 200434 D hypothetical protein 200075..200434 Staphylococcus aureus subsp. aureus USA300_FPR3757 3915042 YP_492893.1 CDS SAUSA300_0179 NC_007793.1 200607 201632 D Catalyzes the reversible two-electron oxidation of formate to carbon dioxide. It allows the assimilation of carbon dioxide and provides energy for growth through oxidative phosphorylation coupled to the reduction of oxygen, nitrate, sulphate or fumarate; formate dehydrogenase 200607..201632 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913345 YP_492894.1 CDS SAUSA300_0180 NC_007793.1 202018 203268 D identified by match to protein family HMM PF07690; integral membrane protein LmrP 202018..203268 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914634 YP_492895.1 CDS SAUSA300_0181 NC_007793.1 203715 210890 D identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01733; match to protein family HMM TIGR01746; non-ribosomal peptide synthetase 203715..210890 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914762 YP_492896.1 CDS SAUSA300_0182 NC_007793.1 210903 211547 D identified by match to protein family HMM PF01648; 4'-phosphopantetheinyl transferase superfamily protein 210903..211547 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914366 YP_492897.1 CDS SAUSA300_0183 NC_007793.1 211875 212369 R identified by match to protein family HMM PF07274; hypothetical protein complement(211875..212369) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913659 YP_492898.1 CDS argB NC_007793.1 212624 213388 R identified by match to protein family HMM PF00696; match to protein family HMM TIGR00761; acetylglutamate kinase complement(212624..213388) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915040 YP_492899.1 CDS argJ NC_007793.1 213404 214645 R bifunctional arginine biosynthesis protein ArgJ; functions at the 1st and 5th steps in arginine biosynthesis; involved in synthesis of acetylglutamate from glutamate and acetyl-CoA and ornithine by transacetylation between acetylornithine and glutmate; bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein complement(213404..214645) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914586 YP_492900.1 CDS argC NC_007793.1 214657 215688 R catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate; N-acetyl-gamma-glutamyl-phosphate reductase complement(214657..215688) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913575 YP_492901.1 CDS rocD NC_007793.1 215727 216911 R identified by match to protein family HMM PF00202; match to protein family HMM TIGR01885; ornithine aminotransferase complement(215727..216911) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914607 YP_492902.1 CDS brnQ NC_007793.1 217164 218519 R identified by match to protein family HMM PF05525; match to protein family HMM TIGR00796; branched-chain amino acid transport system II carrier protein complement(217164..218519) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913551 YP_492903.1 CDS entB NC_007793.1 218795 219292 R identified by match to protein family HMM PF00857; isochorismatase complement(218795..219292) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914912 YP_492904.1 CDS ipdC NC_007793.1 219419 221059 R identified by match to protein family HMM PF00205; match to protein family HMM PF02775; match to protein family HMM PF02776; indole-3-pyruvate decarboxylase complement(219419..221059) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913772 YP_492905.1 CDS ptsG NC_007793.1 221333 223378 R identified by match to protein family HMM PF00358; match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR00830; match to protein family HMM TIGR02002; PTS system glucose-specific IIBC subunit complement(221333..223378) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914934 YP_492906.1 CDS SAUSA300_0192 NC_007793.1 223964 225019 D identified by match to protein family HMM PF05913; hypothetical protein 223964..225019 Staphylococcus aureus subsp. aureus USA300_FPR3757 3915275 YP_492907.1 CDS murQ NC_007793.1 225019 225915 D catalyzes the cleavage of the lactyl ether moiety of N-acetylmuramic acid-6-phosphate (MurNAc-6-P) to form N-acetylglucosamine-6-phosphate (GlcNAc-6-P) and lactate; involved in MurNAc dissimilation pathway; N-acetylmuramic acid-6-phosphate etherase 225019..225915 Staphylococcus aureus subsp. aureus USA300_FPR3757 3915022 YP_492908.1 CDS SAUSA300_0194 NC_007793.1 225927 227381 D identified by match to protein family HMM PF00367; match to protein family HMM PF02378; sucrose-specific PTS transporter protein 225927..227381 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913839 YP_492909.1 CDS SAUSA300_0195 NC_007793.1 227384 228259 D identified by match to protein family HMM PF01380; match to protein family HMM PF01418; transcriptional regulator 227384..228259 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914923 YP_492910.1 CDS hsdR NC_007793.1 228947 231736 D identified by match to protein family HMM PF00270; match to protein family HMM PF04313; match to protein family HMM PF04851; match to protein family HMM TIGR00348; type I restriction-modification enzyme, R subunit 228947..231736 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913181 YP_492911.1 CDS SAUSA300_0197 NC_007793.1 231941 232783 D hypothetical protein 231941..232783 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914668 YP_492912.1 CDS SAUSA300_0198 NC_007793.1 232785 233708 D hypothetical protein 232785..233708 Staphylococcus aureus subsp. aureus USA300_FPR3757 3912879 YP_492913.1 CDS SAUSA300_0199 NC_007793.1 233695 234807 D hypothetical protein 233695..234807 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913244 YP_492914.1 CDS SAUSA300_0200 NC_007793.1 235072 236664 R identified by match to protein family HMM PF00005; peptide ABC transporter ATP-binding protein complement(235072..236664) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913862 YP_492915.1 CDS SAUSA300_0201 NC_007793.1 236621 238099 D identified by match to protein family HMM PF00528; peptide ABC transporter permease 236621..238099 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914014 YP_492916.1 CDS SAUSA300_0202 NC_007793.1 238105 239268 D identified by match to protein family HMM PF00528; peptide ABC transporter permease 238105..239268 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913122 YP_492917.1 CDS SAUSA300_0203 NC_007793.1 239285 241060 D RGD-containing lipoprotein 239285..241060 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913182 YP_492918.1 CDS ggt NC_007793.1 241098 243104 D identified by match to protein family HMM PF01019; match to protein family HMM TIGR00066; gamma-glutamyltranspeptidase 241098..243104 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914678 YP_492919.1 CDS SAUSA300_0205 NC_007793.1 243402 244175 R identified by match to protein family HMM PF04507; match to protein family HMM TIGR01742; tandem lipoprotein complement(243402..244175) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914712 YP_492920.1 CDS SAUSA300_0206 NC_007793.1 244365 244991 R FMN-dependent; requires NADH; catalyzes the cleavage of azo bond in aromatic azo compounds; azoreductase complement(244365..244991) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913386 YP_492921.1 CDS SAUSA300_0207 NC_007793.1 245200 245778 D identified by match to protein family HMM PF01551; hypothetical protein 245200..245778 Staphylococcus aureus subsp. aureus USA300_FPR3757 3912794 YP_492922.1 CDS SAUSA300_0208 NC_007793.1 246161 247258 D identified by match to protein family HMM PF00005; match to protein family HMM PF03459; putative maltose ABC transporter ATP-binding protein 246161..247258 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914871 YP_492923.1 CDS SAUSA300_0209 NC_007793.1 247271 248542 D identified by match to protein family HMM PF01547; putative maltose ABC transporter maltose-binding protein 247271..248542 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913669 YP_492924.1 CDS SAUSA300_0210 NC_007793.1 248545 249813 D identified by match to protein family HMM PF00528; match to protein family HMM PF05154; maltose ABC transporter permease 248545..249813 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914275 YP_492925.1 CDS SAUSA300_0211 NC_007793.1 249815 250654 D identified by match to protein family HMM PF00528; maltose ABC transporter permease 249815..250654 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914433 YP_492926.1 CDS SAUSA300_0212 NC_007793.1 250728 251804 D identified by match to protein family HMM PF01408; match to protein family HMM PF02894; Gfo/Idh/MocA family oxidoreductase 250728..251804 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914829 YP_492927.1 CDS SAUSA300_0213 NC_007793.1 251829 252869 D identified by match to protein family HMM PF01408; match to protein family HMM PF02894; Gfo/Idh/MocA family oxidoreductase 251829..252869 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914736 YP_492928.1 CDS SAUSA300_0214 NC_007793.1 252924 253892 D identified by match to protein family HMM PF01261; match to protein family HMM PF07582; hypothetical protein 252924..253892 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914833 YP_492929.1 CDS SAUSA300_0215 NC_007793.1 254254 254826 R identified by match to protein family HMM PF04140; hypothetical protein complement(254254..254826) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913748 YP_492930.1 CDS uhpT NC_007793.1 254981 256360 D cytoplasmic membrane protein that functions as a monomer; catalyzes the active transport of sugar-phosphates such as glucose-6-phosphate with the obligatory exchange of inorganic phosphate or organophosphate; sugar phosphate antiporter 254981..256360 Staphylococcus aureus subsp. aureus USA300_FPR3757 3912871 YP_492931.1 CDS SAUSA300_0217 NC_007793.1 256719 257477 R identified by match to protein family HMM PF00072; match to protein family HMM PF00165; AraC family DNA-binding response regulator complement(256719..257477) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914472 YP_492932.1 CDS SAUSA300_0218 NC_007793.1 257470 259026 R identified by match to protein family HMM PF06580; sensor histidine kinase family protein complement(257470..259026) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913983 YP_492933.1 CDS SAUSA300_0219 NC_007793.1 259023 259991 R identified by similarity to GB:AAW37499.1; putative iron compound A C transporter, iron compound-binding protein complement(259023..259991) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914159 YP_492934.1 CDS pflB NC_007793.1 260579 262828 D identified by match to protein family HMM PF01228; match to protein family HMM PF02901; match to protein family HMM TIGR01255; formate acetyltransferase 260579..262828 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913584 YP_492935.1 CDS pflA NC_007793.1 262851 263606 D identified by match to protein family HMM PF04055; match to protein family HMM TIGR02493; pyruvate formate-lyase activating enzyme 262851..263606 Staphylococcus aureus subsp. aureus USA300_FPR3757 3912962 YP_492936.1 CDS SAUSA300_0222 NC_007793.1 263942 265705 D identified by match to protein family HMM PF03009; hypothetical protein 263942..265705 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913766 YP_492937.1 CDS SAUSA300_0223 NC_007793.1 265869 266213 R hypothetical protein complement(265869..266213) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913561 YP_492938.1 CDS coa NC_007793.1 266403 268232 D staphylocoagulase 266403..268232 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913019 YP_492939.1 CDS SAUSA300_0225 NC_007793.1 268835 270019 R identified by match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930; putative acyl-CoA acetyltransferase FadA complement(268835..270019) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915268 YP_492940.1 CDS SAUSA300_0226 NC_007793.1 270049 272310 R identified by match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF02737; 3-hydroxyacyl-CoA dehydrogenase complement(270049..272310) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914735 YP_492941.1 CDS fadD NC_007793.1 272496 273707 R identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028; acyl-CoA dehydrogenase FadD complement(272496..273707) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913734 YP_492942.1 CDS fadE NC_007793.1 273819 275324 R identified by match to protein family HMM PF00501; acyl-CoA synthetase FadE complement(273819..275324) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913091 YP_492943.1 CDS SAUSA300_0229 NC_007793.1 275350 276927 R putative acyl-CoA transferase FadX complement(275350..276927) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915241 YP_492944.1 CDS SAUSA300_0230 NC_007793.1 277368 278510 D hypothetical protein 277368..278510 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913093 YP_492945.1 CDS SAUSA300_0231 NC_007793.1 278824 280299 R identified by match to protein family HMM PF00496; ABC transporter substrate-binding protein complement(278824..280299) Staphylococcus aureus subsp. aureus USA300_FPR3757 3912869 YP_492946.1 CDS SAUSA300_0232 NC_007793.1 280497 280853 R identified by match to protein family HMM PF04343; hypothetical protein complement(280497..280853) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915367 YP_492947.1 CDS SAUSA300_0233 NC_007793.1 281010 281183 R hypothetical protein complement(281010..281183) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913488 YP_492948.1 CDS SAUSA300_0234 NC_007793.1 281209 282354 R identified by match to protein family HMM PF00042; match to protein family HMM PF00175; match to protein family HMM PF00970; putative flavohemoprotein complement(281209..282354) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915029 YP_492949.1 CDS SAUSA300_0235 NC_007793.1 283071 283880 D identified by match to protein family HMM PF00056; match to protein family HMM PF02866; match to protein family HMM TIGR01771; L-lactate dehydrogenase 283071..283880 Staphylococcus aureus subsp. aureus USA300_FPR3757 3915181 YP_492950.1 CDS SAUSA300_0236 NC_007793.1 284200 285729 R identified by match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; PTS system, IIBC components complement(284200..285729) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914343 YP_492951.1 CDS SAUSA300_0237 NC_007793.1 286091 287026 D identified by match to protein family HMM PF01156; inosine-uridine preferring nucleoside hydrolase 286091..287026 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913756 YP_492952.1 CDS SAUSA300_0238 NC_007793.1 287365 289461 D identified by match to protein family HMM PF00359; match to protein family HMM PF00874; match to protein family HMM PF05043; BglG family transcriptional antiterminator 287365..289461 Staphylococcus aureus subsp. aureus USA300_FPR3757 3915004 YP_492953.1 CDS SAUSA300_0239 NC_007793.1 289446 289913 D identified by match to protein family HMM PF00359; PTS system, fructose-specific enzyme II, BC component 289446..289913 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913361 YP_492954.1 CDS SAUSA300_0240 NC_007793.1 289936 290214 D identified by match to protein family HMM PF02302; PTS system, galactitol-specific enzyme II, B component 289936..290214 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914332 YP_492955.1 CDS SAUSA300_0241 NC_007793.1 290441 291700 D identified by match to protein family HMM PF03611; match to protein family HMM TIGR00827; PTS system, sorbitol-specific IIC component 290441..291700 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914081 YP_492956.1 CDS gutB NC_007793.1 291718 292773 D identified by match to protein family HMM PF00107; sorbitol dehydrogenase 291718..292773 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914549 YP_492957.1 CDS SAUSA300_0243 NC_007793.1 292775 292921 D hypothetical protein 292775..292921 Staphylococcus aureus subsp. aureus USA300_FPR3757 3915371 YP_492958.1 CDS SAUSA300_0244 NC_007793.1 292945 293988 D identified by match to protein family HMM PF00107; zinc-binding dehydrogenase family oxidoreductase 292945..293988 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913619 YP_492959.1 CDS SAUSA300_0245 NC_007793.1 294558 295232 D 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT; catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; forms homodimers; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 294558..295232 Staphylococcus aureus subsp. aureus USA300_FPR3757 3915239 YP_492960.1 CDS SAUSA300_0246 NC_007793.1 295225 296250 D putative alcohol dehydrogenase 295225..296250 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914784 YP_492961.1 CDS SAUSA300_0247 NC_007793.1 296272 297966 D identified by match to protein family HMM PF04464; putative teichoic acid biosynthesis protein B 296272..297966 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913808 YP_492962.1 CDS SAUSA300_0248 NC_007793.1 298394 299563 D identified by match to protein family HMM PF04464; putative teichoic acid biosynthesis protein F 298394..299563 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914873 YP_492963.1 CDS ispD NC_007793.1 299839 300555 D 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT; catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; forms homodimers; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 299839..300555 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913393 YP_492964.1 CDS SAUSA300_0250 NC_007793.1 300548 301573 D alcohol dehydrogenase, zinc-containing 300548..301573 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914662 YP_492965.1 CDS SAUSA300_0251 NC_007793.1 301595 303283 D identified by match to protein family HMM PF04464; putative teichoic acid biosynthesis protein 301595..303283 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914000 YP_492966.1 CDS SAUSA300_0252 NC_007793.1 303316 305040 D identified by match to protein family HMM PF00535; glycosyl transferase, group 2 family protein 303316..305040 Staphylococcus aureus subsp. aureus USA300_FPR3757 3912852 YP_492967.1 CDS scdA NC_007793.1 305180 305854 D involved in peptidoglycan cross-linking; cell wall biosynthesis protein ScdA 305180..305854 Staphylococcus aureus subsp. aureus USA300_FPR3757 3915065 YP_492968.1 CDS SAUSA300_0254 NC_007793.1 306116 307855 D identified by match to protein family HMM PF02518; match to protein family HMM PF06580; match to protein family HMM PF07694; sensor histidine kinase 306116..307855 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913753 YP_492969.1 CDS SAUSA300_0255 NC_007793.1 307858 308598 D identified by match to protein family HMM PF00072; match to protein family HMM PF04397; two-component response regulator 307858..308598 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914555 YP_492970.1 CDS SAUSA300_0256 NC_007793.1 308711 309154 D negatively regulates murein hydrolase activity; murein hydrolase regulator LrgA 308711..309154 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914434 YP_492971.1 CDS SAUSA300_0257 NC_007793.1 309147 309848 D in conjunction with LrgA this protein inhibits the expression or activity of extracellular murein hydrolases; antiholin-like protein LrgB 309147..309848 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913786 YP_492972.1 CDS SAUSA300_0258 NC_007793.1 309956 310660 R identified by match to protein family HMM PF00392; match to protein family HMM PF07702; GntR family transcriptional regulator complement(309956..310660) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913313 YP_492973.1 CDS SAUSA300_0259 NC_007793.1 310809 311600 D identified by match to protein family HMM PF00358; match to protein family HMM TIGR00830; PTS system, IIA component 310809..311600 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913661 YP_492974.1 CDS bglA NC_007793.1 311616 313052 D identified by match to protein family HMM PF00232; 6-phospho-beta-glucosidase 311616..313052 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913212 YP_492975.1 CDS SAUSA300_0261 NC_007793.1 313486 314247 R identified by match to protein family HMM PF01209; hypothetical protein complement(313486..314247) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914178 YP_492976.1 CDS rbsK NC_007793.1 314498 315412 R identified by match to protein family HMM PF00294; match to protein family HMM TIGR02152; ribokinase complement(314498..315412) Staphylococcus aureus subsp. aureus USA300_FPR3757 3912996 YP_492977.1 CDS rbsD NC_007793.1 315440 315844 R cytoplasmic mutarotase that catalyzes the conversion between beta-pyran and beta-furan forms of D-ribose; RbsD is required for efficient ribose utilization in E. coli; rbsD-mutant E. coli strains are unable to use ribose as a sole carbon source; D-ribose pyranase complement(315440..315844) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914706 YP_492978.1 CDS SAUSA300_0264 NC_007793.1 315859 316740 R identified by match to protein family HMM PF06800; ribose transporter RbsU complement(315859..316740) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913430 YP_492979.1 CDS SAUSA300_0265 NC_007793.1 316972 317970 R identified by match to protein family HMM PF00356; match to protein family HMM PF00532; putative ribose operon repressor complement(316972..317970) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913754 YP_492980.1 CDS SAUSA300_0266 NC_007793.1 318350 318742 D hypothetical protein 318350..318742 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913597 YP_492981.1 CDS SAUSA300_0267 NC_007793.1 318970 319374 D transposase 318970..319374 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914541 YP_492982.1 CDS SAUSA300_0268 NC_007793.1 319415 320791 R identified by match to protein family HMM PF07690; putative drug transporter complement(319415..320791) Staphylococcus aureus subsp. aureus USA300_FPR3757 3912773 YP_492983.1 CDS SAUSA300_0269 NC_007793.1 321025 322017 D identified by match to protein family HMM PF02275; choloylglycine hydrolase family protein 321025..322017 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913906 YP_492984.1 CDS lytM NC_007793.1 322343 323293 D identified by match to protein family HMM PF01551; peptidoglycan hydrolase 322343..323293 Staphylococcus aureus subsp. aureus USA300_FPR3757 3912951 YP_492985.1 CDS SAUSA300_0271 NC_007793.1 323345 324004 R identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein complement(323345..324004) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914270 YP_492986.1 CDS SAUSA300_0272 NC_007793.1 324018 324938 R hypothetical protein complement(324018..324938) Staphylococcus aureus subsp. aureus USA300_FPR3757 3912833 YP_492987.1 CDS SAUSA300_0273 NC_007793.1 324935 326101 R hypothetical protein complement(324935..326101) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914913 YP_492988.1 CDS SAUSA300_0274 NC_007793.1 326169 327692 R hypothetical protein complement(326169..327692) Staphylococcus aureus subsp. aureus USA300_FPR3757 3912979 YP_492989.1 CDS SAUSA300_0275 NC_007793.1 327963 328616 D hypothetical protein 327963..328616 Staphylococcus aureus subsp. aureus USA300_FPR3757 3912775 YP_492990.1 CDS SAUSA300_0276 NC_007793.1 328650 329237 D hypothetical protein 328650..329237 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914183 YP_492991.1 CDS SAUSA300_0277 NC_007793.1 329380 330273 R identified by match to protein family HMM PF05257; putative staphyloxanthin biosynthesis protein complement(329380..330273) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914521 YP_492992.1 CDS SAUSA300_0278 NC_007793.1 330521 330814 D identified by match to protein family HMM PF06013; hypothetical protein 330521..330814 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914717 YP_492993.1 CDS SAUSA300_0279 NC_007793.1 330898 333927 D hypothetical protein 330898..333927 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914197 YP_492994.1 CDS SAUSA300_0280 NC_007793.1 333927 334385 D hypothetical protein 333927..334385 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914530 YP_492995.1 CDS SAUSA300_0281 NC_007793.1 334357 334599 D hypothetical protein 334357..334599 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914324 YP_492996.1 CDS SAUSA300_0282 NC_007793.1 334612 335946 D hypothetical protein 334612..335946 Staphylococcus aureus subsp. aureus USA300_FPR3757 3915156 YP_492997.1 CDS SAUSA300_0283 NC_007793.1 335968 340407 D identified by similarity to SP:P0C048; match to protein family HMM PF01580; essC protein 335968..340407 Staphylococcus aureus subsp. aureus USA300_FPR3757 3915395 YP_492998.1 CDS SAUSA300_0284 NC_007793.1 340437 340829 D hypothetical protein 340437..340829 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913819 YP_492999.1 CDS SAUSA300_0285 NC_007793.1 340845 341159 D hypothetical protein 340845..341159 Staphylococcus aureus subsp. aureus USA300_FPR3757 3912862 YP_493000.1 CDS SAUSA300_0286 NC_007793.1 341159 341833 D hypothetical protein 341159..341833 Staphylococcus aureus subsp. aureus USA300_FPR3757 3915066 YP_493001.1 CDS SAUSA300_0287 NC_007793.1 341833 342150 D hypothetical protein 341833..342150 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914967 YP_493002.1 CDS SAUSA300_0288 NC_007793.1 342160 344004 D hypothetical protein 342160..344004 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914839 YP_493003.1 CDS SAUSA300_0289 NC_007793.1 344015 344506 D identified by match to protein family HMM PF04634; match to protein family HMM TIGR01741; hypothetical protein 344015..344506 Staphylococcus aureus subsp. aureus USA300_FPR3757 3915305 YP_493004.1 CDS SAUSA300_0290 NC_007793.1 344714 345397 D putative lipoprotein 344714..345397 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914259 YP_493005.1 CDS SAUSA300_0291 NC_007793.1 345544 346155 D hypothetical protein 345544..346155 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913768 YP_493006.1 CDS SAUSA300_0292 NC_007793.1 346291 346509 D hypothetical protein 346291..346509 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914788 YP_493007.1 CDS SAUSA300_0293 NC_007793.1 346641 347141 D identified by match to protein family HMM PF04634; match to protein family HMM TIGR01741; hypothetical protein 346641..347141 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914464 YP_493008.2 CDS SAUSA300_0294 NC_007793.1 347152 347652 D identified by match to protein family HMM PF04634; match to protein family HMM TIGR01741; hypothetical protein 347152..347652 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914924 YP_493009.1 CDS SAUSA300_0295 NC_007793.1 347772 348158 D authenticated frameshift, not result of sequencing error; same frameshift also found in COL; identified by match to protein family HMM PF04634; match to protein family HMM TIGR01741; hypothetical protein 347772..348158 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913887 YP_493010.1 CDS SAUSA300_0296 NC_007793.1 348169 348660 D identified by match to protein family HMM PF04634; match to protein family HMM TIGR01741; hypothetical protein 348169..348660 Staphylococcus aureus subsp. aureus USA300_FPR3757 3915149 YP_493011.1 CDS SAUSA300_0297 NC_007793.1 348870 349553 D putative lipoprotein 348870..349553 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914073 YP_493012.1 CDS SAUSA300_0298 NC_007793.1 350139 350639 D identified by match to protein family HMM PF04634; match to protein family HMM TIGR01741; hypothetical protein 350139..350639 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914318 YP_493013.1 CDS SAUSA300_0299 NC_007793.1 350651 351151 D identified by match to protein family HMM PF04634; match to protein family HMM TIGR01741; hypothetical protein 350651..351151 Staphylococcus aureus subsp. aureus USA300_FPR3757 3912933 YP_493014.1 CDS SAUSA300_0300 NC_007793.1 351162 351662 D identified by match to protein family HMM PF04634; match to protein family HMM TIGR01741; hypothetical protein 351162..351662 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913867 YP_493015.1 CDS SAUSA300_0301 NC_007793.1 351673 352173 D identified by match to protein family HMM PF04634; match to protein family HMM TIGR01741; hypothetical protein 351673..352173 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913632 YP_493016.1 CDS SAUSA300_0302 NC_007793.1 352184 352672 D identified by match to protein family HMM PF04634; match to protein family HMM TIGR01741; hypothetical protein 352184..352672 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913814 YP_493017.1 CDS SAUSA300_0303 NC_007793.1 353295 353669 D hypothetical protein 353295..353669 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914542 YP_493018.1 CDS SAUSA300_0304 NC_007793.1 353822 354220 D hypothetical protein 353822..354220 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913469 YP_493019.1 CDS SAUSA300_0305 NC_007793.1 354436 355131 R authenticated frameshift; identified by match to protein family HMM PF01226; formate/nitrite transporter family protein complement(354436..355131) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913624 YP_493020.1 CDS brnQ NC_007793.1 355497 356774 R identified by match to protein family HMM PF05525; match to protein family HMM TIGR00796; branched-chain amino acid transport system II carrier protein complement(355497..356774) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913902 YP_493021.1 CDS SAUSA300_0307 NC_007793.1 357388 358278 D identified by match to protein family HMM PF03767; match to protein family HMM TIGR01533; 5'-nucleotidase 357388..358278 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913447 YP_493022.1 CDS SAUSA300_0308 NC_007793.1 358527 359576 D identified by match to protein family HMM PF02687; ABC transporter permease 358527..359576 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914983 YP_493023.1 CDS SAUSA300_0309 NC_007793.1 359589 360266 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 359589..360266 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913556 YP_493024.1 CDS pfoR NC_007793.1 360474 361505 D perfringolysin O regulator protein 360474..361505 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914333 YP_493025.1 CDS SAUSA300_0311 NC_007793.1 361848 362966 D identified by match to protein family HMM PF00294; PfkB family carbohydrate kinase 361848..362966 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913322 YP_493026.1 CDS SAUSA300_0312 NC_007793.1 362941 363864 D identified by match to protein family HMM PF04227; hypothetical protein 362941..363864 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913028 YP_493027.1 CDS SAUSA300_0313 NC_007793.1 363875 365095 D identified by match to protein family HMM PF01773; match to protein family HMM PF07662; match to protein family HMM PF07670; putative nucleoside permease NupC 363875..365095 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913815 YP_493028.1 CDS SAUSA300_0314 NC_007793.1 365200 366732 R identified by match to protein family HMM PF00474; match to protein family HMM TIGR00813; sodium:solute symporter family protein complement(365200..366732) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913453 YP_493029.1 CDS nanA NC_007793.1 366772 367653 R catalyzes the formation of pyruvate and N-acetylmannosamine from N-acetylneuraminic acid; N-acetylneuraminate lyase complement(366772..367653) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914699 YP_493030.1 CDS SAUSA300_0316 NC_007793.1 367811 368671 D identified by match to protein family HMM PF00480; ROK family protein 367811..368671 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914591 YP_493031.1 CDS SAUSA300_0317 NC_007793.1 368949 369749 R identified by match to protein family HMM PF01380; match to protein family HMM PF01418; hypothetical protein complement(368949..369749) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915086 YP_493032.1 CDS SAUSA300_0318 NC_007793.1 369889 370557 D Converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate; N-acetylmannosamine-6-phosphate 2-epimerase 369889..370557 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913041 YP_493033.1 CDS SAUSA300_0319 NC_007793.1 370684 371997 R identified by match to protein family HMM PF07670; hypothetical protein complement(370684..371997) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914093 YP_493034.1 CDS SAUSA300_0320 NC_007793.1 372415 374487 D identified by match to protein family HMM PF04650; match to protein family HMM TIGR01168; triacylglycerol lipase 372415..374487 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913594 YP_493035.1 CDS SAUSA300_0321 NC_007793.1 374729 375556 R hypothetical protein complement(374729..375556) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915148 YP_493036.1 CDS SAUSA300_0322 NC_007793.1 375629 376828 R identified by match to protein family HMM PF00724; Oye family NADH-dependent flavin oxidoreductase complement(375629..376828) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913165 YP_493037.1 CDS SAUSA300_0323 NC_007793.1 376924 377016 D hypothetical protein 376924..377016 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913919 YP_493038.1 CDS SAUSA300_0324 NC_007793.1 377130 378131 D identified by match to protein family HMM PF00296; hypothetical protein 377130..378131 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914437 YP_493039.1 CDS SAUSA300_0325 NC_007793.1 378165 378497 D identified by match to protein family HMM PF01597; glycine cleavage H-protein 378165..378497 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913721 YP_493040.1 CDS SAUSA300_0326 NC_007793.1 378498 379298 D identified by match to protein family HMM PF01661; hypothetical protein 378498..379298 Staphylococcus aureus subsp. aureus USA300_FPR3757 3912958 YP_493041.1 CDS SAUSA300_0327 NC_007793.1 379288 380232 D hypothetical protein 379288..380232 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913647 YP_493042.1 CDS SAUSA300_0328 NC_007793.1 380210 381232 D identified by match to protein family HMM PF03099; match to protein family HMM TIGR00545; lipoate-protein ligase A family protein 380210..381232 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913890 YP_493043.1 CDS SAUSA300_0329 NC_007793.1 381547 382572 D identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF05368; match to protein family HMM PF07993; putative oxidoreductase 381547..382572 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913256 YP_493044.1 CDS ulaA NC_007793.1 382665 384011 R membrane component; functions with enzymes IIB (sgaB; ulaB) and IIA (sgaA; ulaC) enzyme I and HPr for anaerobic utilization and uptake of L-ascorbate; sgaTBA are regulated by yifQ as well as Crp and Fnr; PTS system ascorbate-specific transporter subunit IIC complement(382665..384011) Staphylococcus aureus subsp. aureus USA300_FPR3757 3912895 YP_493045.1 CDS SAUSA300_0331 NC_007793.1 384026 384310 R identified by match to protein family HMM PF02302; hypothetical protein complement(384026..384310) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913481 YP_493046.1 CDS SAUSA300_0332 NC_007793.1 384312 384755 R identified by match to protein family HMM PF00359; PTS system, IIA component complement(384312..384755) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914414 YP_493047.1 CDS SAUSA300_0333 NC_007793.1 384760 386715 R identified by match to protein family HMM PF00359; match to protein family HMM PF00874; match to protein family HMM PF05043; BglG family transcriptional antiterminator complement(384760..386715) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914022 YP_493048.1 CDS SAUSA300_0334 NC_007793.1 386927 387346 D identified by match to protein family HMM PF01047; MarR family transcriptional regulator 386927..387346 Staphylococcus aureus subsp. aureus USA300_FPR3757 3912899 YP_493049.1 CDS SAUSA300_0335 NC_007793.1 387453 388808 D identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797; MATE efflux family protein 387453..388808 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914369 YP_493050.1 CDS SAUSA300_0336 NC_007793.1 388912 389352 D hypothetical protein 388912..389352 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913085 YP_493051.1 CDS glpT NC_007793.1 389435 390793 R identified by match to protein family HMM PF07690; match to protein family HMM TIGR00712; match to protein family HMM TIGR00881; glycerol-3-phosphate transporter complement(389435..390793) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915036 YP_493052.1 CDS SAUSA300_0338 NC_007793.1 391101 392027 D identified by match to protein family HMM PF00903; glyoxalase family protein 391101..392027 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913951 YP_493053.1 CDS SAUSA300_0339 NC_007793.1 392041 393102 D identified by match to protein family HMM PF00296; hypothetical protein 392041..393102 Staphylococcus aureus subsp. aureus USA300_FPR3757 3915235 YP_493054.1 CDS SAUSA300_0340 NC_007793.1 393116 393682 D identified by match to protein family HMM PF03358; NADH-dependent FMN reductase 393116..393682 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914255 YP_493055.1 CDS SAUSA300_0341 NC_007793.1 393742 394737 R identified by match to protein family HMM PF03601; hypothetical protein complement(393742..394737) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914714 YP_493056.1 CDS SAUSA300_0342 NC_007793.1 394736 395131 D hypothetical protein 394736..395131 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914371 YP_493057.1 CDS SAUSA300_0343 NC_007793.1 395211 395756 D identified by match to protein family HMM PF00583; acetyltransferase 395211..395756 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913074 YP_493058.1 CDS SAUSA300_0344 NC_007793.1 396024 396878 D identified by match to protein family HMM PF04302; putative lipoprotein 396024..396878 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913538 YP_493059.1 CDS SAUSA300_0345 NC_007793.1 396875 398104 D identified by match to protein family HMM PF04261; match to protein family HMM TIGR01409; match to protein family HMM TIGR01412; match to protein family HMM TIGR01413; Tat-translocated protein 396875..398104 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914220 YP_493060.1 CDS SAUSA300_0346 NC_007793.1 398115 399797 D hypothetical protein 398115..399797 Staphylococcus aureus subsp. aureus USA300_FPR3757 3915329 YP_493061.1 CDS tatC NC_007793.1 399889 400545 R identified by match to protein family HMM PF00902; match to protein family HMM TIGR00945; Sec-independent protein translocase TatC complement(399889..400545) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913197 YP_493062.1 CDS SAUSA300_0348 NC_007793.1 400607 400831 R identified by match to protein family HMM PF02416; match to protein family HMM TIGR01411; twin arginine-targeting protein translocase complement(400607..400831) Staphylococcus aureus subsp. aureus USA300_FPR3757 3912813 YP_493063.1 CDS SAUSA300_0349 NC_007793.1 400931 401320 R hypothetical protein complement(400931..401320) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913724 YP_493064.1 CDS SAUSA300_0350 NC_007793.1 401561 401764 D identified by match to protein family HMM PF01381; Cro/CI family transcriptional regulator-like protein 401561..401764 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913137 YP_493065.1 CDS SAUSA300_0351 NC_007793.1 401761 402474 D hypothetical protein 401761..402474 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914476 YP_493066.1 CDS SAUSA300_0352 NC_007793.1 402499 403341 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 402499..403341 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914078 YP_493067.1 CDS SAUSA300_0353 NC_007793.1 403341 403970 D hypothetical protein 403341..403970 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913545 YP_493068.1 CDS ltrA NC_007793.1 404337 405470 R identified by match to protein family HMM PF06772; hypothetical protein complement(404337..405470) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913663 YP_493069.1 CDS SAUSA300_0355 NC_007793.1 406009 407190 D identified by match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930; acetyl-CoA acetyltransferase 406009..407190 Staphylococcus aureus subsp. aureus USA300_FPR3757 3915261 YP_493070.1 CDS SAUSA300_0356 NC_007793.1 407273 408025 R identified by match to protein family HMM PF04199; hypothetical protein complement(407273..408025) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915206 YP_493071.1 CDS metE NC_007793.1 408068 410296 R catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine to form methionine; 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase complement(408068..410296) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915361 YP_493072.1 CDS SAUSA300_0358 NC_007793.1 410293 412134 R catalyzes the formation of 5,10-methylenetetrahydrofolate from 5-methyltetrahydrofolate and S-adenosyl-L-homocysteine and methionine from S-adenosyl-L-methionine and L-homocysteine; expressed in B. subtilis under methionine starvation conditions; bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein complement(410293..412134) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914465 YP_493073.1 CDS SAUSA300_0359 NC_007793.1 412103 413263 R identified by match to protein family HMM PF01053; trans-sulfuration enzyme family protein complement(412103..413263) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914529 YP_493074.1 CDS SAUSA300_0360 NC_007793.1 413260 414363 R identified by match to protein family HMM PF01053; Cys/Met metabolism PLP-dependent enzyme complement(413260..414363) Staphylococcus aureus subsp. aureus USA300_FPR3757 3912967 YP_493075.1 CDS SAUSA300_0361 NC_007793.1 415027 415872 D identified by match to protein family HMM PF02195; match to protein family HMM TIGR00180; ParB-like partition protein 415027..415872 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914812 YP_493076.1 CDS SAUSA300_0362 NC_007793.1 416029 416910 D identified by match to protein family HMM PF00924; hypothetical protein 416029..416910 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914884 YP_493077.1 CDS SAUSA300_0363 NC_007793.1 416940 417143 D identified by match to protein family HMM PF06107; hypothetical protein 416940..417143 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913341 YP_493078.1 CDS ychF NC_007793.1 417155 418252 D translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD 417155..418252 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913396 YP_493079.1 CDS SAUSA300_0365 NC_007793.1 418338 418529 R hypothetical protein complement(418338..418529) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913226 YP_493080.1 CDS rpsF NC_007793.1 418773 419069 D binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 418773..419069 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914070 YP_493081.1 CDS ssb NC_007793.1 419090 419593 D identified by match to protein family HMM PF00436; match to protein family HMM TIGR00621; single-strand binding protein 419090..419593 Staphylococcus aureus subsp. aureus USA300_FPR3757 3912855 YP_493082.1 CDS rpsR NC_007793.1 419645 419887 D binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 419645..419887 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913791 YP_493083.1 CDS SAUSA300_0369 NC_007793.1 420153 421091 R identified by match to protein family HMM PF07751; hypothetical protein complement(420153..421091) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914780 YP_493084.1 CDS SAUSA300_0370 NC_007793.1 422037 422648 D putative enterotoxin 422037..422648 Staphylococcus aureus subsp. aureus USA300_FPR3757 3915039 YP_493085.1 CDS SAUSA300_0371 NC_007793.1 423017 423385 D identified by match to protein family HMM PF06486; match to protein family HMM TIGR01655; hypothetical protein 423017..423385 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914942 YP_493086.1 CDS SAUSA300_0372 NC_007793.1 423566 424138 D identified by match to protein family HMM PF03413; hypothetical protein 423566..424138 Staphylococcus aureus subsp. aureus USA300_FPR3757 3915051 YP_493087.1 CDS SAUSA300_0373 NC_007793.1 424276 424539 R hypothetical protein complement(424276..424539) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913419 YP_493088.1 CDS SAUSA300_0374 NC_007793.1 424839 425090 D identified by match to protein family HMM PF04226; hypothetical protein 424839..425090 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913953 YP_493089.1 CDS SAUSA300_0375 NC_007793.1 425516 426097 D identified by match to protein family HMM PF00300; putative phosphoglycerate mutase family protein 425516..426097 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914406 YP_493090.1 CDS SAUSA300_0376 NC_007793.1 426163 426546 R hypothetical protein complement(426163..426546) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913083 YP_493091.1 CDS SAUSA300_0377 NC_007793.1 426801 427427 R hypothetical protein complement(426801..427427) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913736 YP_493092.1 CDS SAUSA300_0378 NC_007793.1 427500 427793 R hypothetical protein complement(427500..427793) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913162 YP_493093.1 CDS ahpF NC_007793.1 427872 429395 R identified by match to protein family HMM PF00070; match to protein family HMM PF07992; alkyl hydroperoxide reductase subunit F complement(427872..429395) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913692 YP_493094.1 CDS ahpC NC_007793.1 429411 429980 R identified by match to protein family HMM PF00578; alkyl hydroperoxide reductase subunit C complement(429411..429980) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914843 YP_493095.1 CDS SAUSA300_0381 NC_007793.1 430472 431227 D identified by match to protein family HMM PF00881; putative NAD(P)H-flavin oxidoreductase 430472..431227 Staphylococcus aureus subsp. aureus USA300_FPR3757 3915054 YP_493096.1 CDS SAUSA300_0382 NC_007793.1 431308 432696 R identified by match to protein family HMM PF00375; sodium:dicarboxylate symporter family protein complement(431308..432696) Staphylococcus aureus subsp. aureus USA300_FPR3757 3912892 YP_493097.1 CDS SAUSA300_0383 NC_007793.1 433673 434629 R hypothetical protein complement(433673..434629) Staphylococcus aureus subsp. aureus USA300_FPR3757 3912795 YP_493098.1 CDS SAUSA300_0384 NC_007793.1 434747 435409 R hypothetical protein complement(434747..435409) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913246 YP_493099.1 CDS SAUSA300_0385 NC_007793.1 435552 435959 R hypothetical protein complement(435552..435959) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915279 YP_493100.1 CDS xpt NC_007793.1 436472 437050 D Catalyzes the transfer of the phosphoribosyl moiety from 5-phospho--D-ribosyl-1-pyrophosphate (PRib-PP) to the 6-oxo-guanine and -xanthine; xanthine phosphoribosyltransferase 436472..437050 Staphylococcus aureus subsp. aureus USA300_FPR3757 3915200 YP_493101.1 CDS pbuX NC_007793.1 437050 438318 D identified by match to protein family HMM PF00860; match to protein family HMM TIGR00801; xanthine permease 437050..438318 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914532 YP_493102.1 CDS guaB NC_007793.1 438356 439822 D identified by match to protein family HMM PF00478; match to protein family HMM PF00571; match to protein family HMM TIGR01302; inosine-5'-monophosphate dehydrogenase 438356..439822 Staphylococcus aureus subsp. aureus USA300_FPR3757 3912908 YP_493103.1 CDS guaA NC_007793.1 439847 441388 D contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase 439847..441388 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913366 YP_493104.1 CDS SAUSA300_0390 NC_007793.1 441501 442037 R hypothetical protein complement(441501..442037) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913683 YP_493105.1 CDS SAUSA300_0391 NC_007793.1 442430 443134 R hypothetical protein complement(442430..443134) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913881 YP_493106.1 CDS SAUSA300_0392 NC_007793.1 444066 444218 R hypothetical protein complement(444066..444218) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913338 YP_493107.1 CDS SAUSA300_0393 NC_007793.1 444742 445101 R identified by match to protein family HMM PF06993; hypothetical protein complement(444742..445101) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913342 YP_493108.1 CDS SAUSA300_0394 NC_007793.1 445120 445965 R identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF05368; FAD/NAD(P)-binding Rossmann fold superfamily protein complement(445120..445965) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913898 YP_493109.1 CDS SAUSA300_0395 NC_007793.1 446437 447117 D these proteins share structural homology to known superantigen proteins but do not exhibit any of the properties expected such as histocompatibility complex class II binding or broad T-cell activation; superantigen-like protein 446437..447117 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914922 YP_493110.1 CDS set7 NC_007793.1 447403 448098 D these proteins share structural homology to known superantigen proteins but do not exhibit any of the properties expected such as histocompatibility complex class II binding or broad T-cell activation; superantigen-like protein 447403..448098 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914588 YP_493111.1 CDS SAUSA300_0397 NC_007793.1 448389 449447 D these proteins share structural homology to known superantigen proteins but do not exhibit any of the properties expected such as histocompatibility complex class II binding or broad T-cell activation; superantigen-like protein 448389..449447 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914661 YP_493112.1 CDS SAUSA300_0398 NC_007793.1 449812 450738 D these proteins share structural homology to known superantigen proteins but do not exhibit any of the properties expected such as histocompatibility complex class II binding or broad T-cell activation; superantigen-like protein 449812..450738 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913290 YP_493113.1 CDS SAUSA300_0399 NC_007793.1 451102 451806 D SSL5, SET3, SET10; bind P-selectin glycoprotein ligand-1 and inhibit P-selectin-mediated neutrophil rolling along the endothelium; these proteins share structural homology to known superantigens but do not exhibit any of the properties expected such as histocompatibility complex class II binding or broad T-cell activation; superantigen-like protein 5 451102..451806 Staphylococcus aureus subsp. aureus USA300_FPR3757 3915140 YP_493114.1 CDS SAUSA300_0400 NC_007793.1 452252 452947 D these proteins share structural homology to known superantigen proteins but do not exhibit any of the properties expected such as histocompatibility complex class II binding or broad T-cell activation; superantigen-like protein 452252..452947 Staphylococcus aureus subsp. aureus USA300_FPR3757 3912841 YP_493115.1 CDS SAUSA300_0401 NC_007793.1 453368 454063 D SSL7, SET1; blocks IgA-FcR interactions and inhibits complement, leading to increased survival of a sensitive bacterium in blood; superantigen-like protein 7 453368..454063 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913606 YP_493116.1 CDS SAUSA300_0402 NC_007793.1 454407 455105 D these proteins share structural homology to known superantigen proteins but do not exhibit any of the properties expected such as histocompatibility complex class II binding or broad T-cell activation; superantigen-like protein 454407..455105 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913517 YP_493117.1 CDS SAUSA300_0403 NC_007793.1 455485 456183 D these proteins share structural homology to known superantigen proteins but do not exhibit any of the properties expected such as histocompatibility complex class II binding or broad T-cell activation; superantigen-like protein 455485..456183 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914104 YP_493118.1 CDS SAUSA300_0404 NC_007793.1 456549 457232 D these proteins share structural homology to known superantigen proteins but do not exhibit any of the properties expected such as histocompatibility complex class II binding or broad T-cell activation; superantigen-like protein 456549..457232 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913924 YP_493119.1 CDS hsdM NC_007793.1 457496 459052 D identified by match to protein family HMM PF02384; match to protein family HMM TIGR00497; type I restriction-modification system, M subunit 457496..459052 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913767 YP_493120.1 CDS SAUSA300_0406 NC_007793.1 459045 460256 D identified by match to protein family HMM PF01420; putative restriction/modification system specificity protein 459045..460256 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913842 YP_493121.1 CDS SAUSA300_0407 NC_007793.1 460639 461316 D these proteins share structural homology to known superantigen proteins but do not exhibit any of the properties expected such as histocompatibility complex class II binding or broad T-cell activation; superantigen-like protein 460639..461316 Staphylococcus aureus subsp. aureus USA300_FPR3757 3915045 YP_493122.1 CDS SAUSA300_0408 NC_007793.1 461338 462846 D identified by match to protein family HMM TIGR01168; hypothetical protein 461338..462846 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914631 YP_493123.1 CDS SAUSA300_0409 NC_007793.1 462949 463257 R hypothetical protein complement(462949..463257) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913328 YP_493124.1 CDS SAUSA300_0410 NC_007793.1 463595 464398 D identified by match to protein family HMM PF04507; match to protein family HMM TIGR01742; tandem lipoprotein 463595..464398 Staphylococcus aureus subsp. aureus USA300_FPR3757 3912896 YP_493125.1 CDS SAUSA300_0411 NC_007793.1 464429 465229 D identified by match to protein family HMM PF04507; match to protein family HMM TIGR01742; tandem lipoprotein 464429..465229 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914185 YP_493126.1 CDS SAUSA300_0413 NC_007793.1 466101 466904 D identified by match to protein family HMM PF04507; match to protein family HMM TIGR01742; tandem lipoprotein 466101..466904 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913547 YP_493127.1 CDS SAUSA300_0414 NC_007793.1 466923 467693 D identified by match to protein family HMM PF04507; match to protein family HMM TIGR01742; tandem lipoprotein 466923..467693 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914931 YP_493128.1 CDS lpl3 NC_007793.1 467725 468516 D identified by match to protein family HMM PF04507; match to protein family HMM TIGR01742; tandem lipoprotein 467725..468516 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914597 YP_493129.1 CDS SAUSA300_0416 NC_007793.1 468586 469362 D identified by match to protein family HMM PF04507; match to protein family HMM TIGR01742; tandem lipoprotein 468586..469362 Staphylococcus aureus subsp. aureus USA300_FPR3757 3912817 YP_493130.1 CDS SAUSA300_0417 NC_007793.1 469538 470353 D identified by match to protein family HMM PF04507; match to protein family HMM TIGR01742; tandem lipoprotein 469538..470353 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913723 YP_493131.1 CDS SAUSA300_0418 NC_007793.1 470372 471157 D identified by match to protein family HMM PF04507; match to protein family HMM TIGR01742; tandem lipoprotein 470372..471157 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913066 YP_493132.1 CDS SAUSA300_0419 NC_007793.1 471340 472152 D identified by match to protein family HMM PF04507; match to protein family HMM TIGR01742; tandem lipoprotein 471340..472152 Staphylococcus aureus subsp. aureus USA300_FPR3757 3912926 YP_493133.1 CDS SAUSA300_0420 NC_007793.1 472142 473470 D hypothetical protein 472142..473470 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913617 YP_493134.1 CDS SAUSA300_0421 NC_007793.1 473467 473790 D hypothetical protein 473467..473790 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914392 YP_493135.1 CDS SAUSA300_0422 NC_007793.1 473809 474123 D hypothetical protein 473809..474123 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913761 YP_493136.1 CDS SAUSA300_0423 NC_007793.1 474413 474673 R hypothetical protein complement(474413..474673) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913776 YP_493137.1 CDS SAUSA300_0424 NC_007793.1 474792 475994 D identified by match to protein family HMM PF02492; match to protein family HMM PF07683; putative cobalamin synthesis protein 474792..475994 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913980 YP_493138.1 CDS SAUSA300_0425 NC_007793.1 477582 479066 D Catalyzes the transfer of electrons from NADH to ubiquinone; NADH dehydrogenase subunit 5 477582..479066 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914153 YP_493139.1 CDS SAUSA300_0426 NC_007793.1 479079 481784 D hypothetical protein 479079..481784 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913539 YP_493140.1 CDS SAUSA300_0427 NC_007793.1 481946 482308 D hypothetical protein 481946..482308 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914937 YP_493141.1 CDS SAUSA300_0428 NC_007793.1 482537 482953 R hypothetical protein complement(482537..482953) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914302 YP_493142.1 CDS SAUSA300_0429 NC_007793.1 482991 483665 D identified by match to protein family HMM PF01569; hypothetical protein 482991..483665 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913688 YP_493143.1 CDS SAUSA300_0430 NC_007793.1 483702 484436 D hypothetical protein 483702..484436 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914638 YP_493144.1 CDS SAUSA300_0431 NC_007793.1 484614 484727 D hypothetical protein 484614..484727 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913874 YP_493145.1 CDS SAUSA300_0432 NC_007793.1 484892 486229 D identified by match to protein family HMM PF00209; sodium dependent transporter 484892..486229 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914688 YP_493146.1 CDS cysM NC_007793.1 486446 487360 D identified by match to protein family HMM PF00291; cysteine synthase/cystathionine beta-synthase 486446..487360 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914778 YP_493147.1 CDS metB NC_007793.1 487344 488486 D identified by match to protein family HMM PF00266; match to protein family HMM PF01053; cystathionine gamma-synthase 487344..488486 Staphylococcus aureus subsp. aureus USA300_FPR3757 3915214 YP_493148.1 CDS SAUSA300_0435 NC_007793.1 488780 489805 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 488780..489805 Staphylococcus aureus subsp. aureus USA300_FPR3757 3915270 YP_493149.1 CDS SAUSA300_0436 NC_007793.1 489809 490468 D identified by match to protein family HMM PF00528; ABC transporter permease 489809..490468 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914676 YP_493150.1 CDS SAUSA300_0437 NC_007793.1 490505 491347 D identified by match to protein family HMM PF03180; NLPA lipoprotein 490505..491347 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914608 YP_493151.1 CDS SAUSA300_0438 NC_007793.1 491679 492683 D identified by match to protein family HMM PF01476; match to protein family HMM PF05257; CHAP domain-contain protein 491679..492683 Staphylococcus aureus subsp. aureus USA300_FPR3757 3912915 YP_493152.1 CDS SAUSA300_0439 NC_007793.1 492868 493137 R hypothetical protein complement(492868..493137) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913296 YP_493153.1 CDS SAUSA300_0440 NC_007793.1 493286 493681 D identified by match to protein family HMM PF00293; MutT/nudix family protein 493286..493681 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913173 YP_493154.1 CDS SAUSA300_0441 NC_007793.1 493671 494156 D identified by match to protein family HMM PF00583; acetyltransferase 493671..494156 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914285 YP_493155.1 CDS SAUSA300_0442 NC_007793.1 494325 495107 R identified by match to protein family HMM PF07907; hypothetical protein complement(494325..495107) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914707 YP_493156.1 CDS SAUSA300_0443 NC_007793.1 495104 496216 R identified by match to protein family HMM PF07907; hypothetical protein complement(495104..496216) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914340 YP_493157.1 CDS gltC NC_007793.1 496337 497221 R identified by match to protein family HMM PF00126; LysR family regulatory protein complement(496337..497221) Staphylococcus aureus subsp. aureus USA300_FPR3757 3912816 YP_493158.1 CDS gltB NC_007793.1 497402 501901 D identified by match to protein family HMM PF00310; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04898; glutamate synthase, large subunit 497402..501901 Staphylococcus aureus subsp. aureus USA300_FPR3757 3912856 YP_493159.1 CDS gltD NC_007793.1 501919 503382 D glutamate synthase is composed of subunits alpha and beta; beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate; glutamate synthase subunit beta 501919..503382 Staphylococcus aureus subsp. aureus USA300_FPR3757 3915314 YP_493160.1 CDS treP NC_007793.1 504214 505641 D identified by match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR01992; PTS system, trehalose-specific IIBC component 504214..505641 Staphylococcus aureus subsp. aureus USA300_FPR3757 3915171 YP_493161.1 CDS treC NC_007793.1 505705 507345 D identified by match to protein family HMM PF00128; match to protein family HMM TIGR02403; alpha,alpha-phosphotrehalase 505705..507345 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913260 YP_493162.1 CDS treR NC_007793.1 507370 508098 D identified by match to protein family HMM PF00392; match to protein family HMM PF07702; match to protein family HMM TIGR02404; trehalose operon repressor 507370..508098 Staphylococcus aureus subsp. aureus USA300_FPR3757 3912934 YP_493163.1 CDS SAUSA300_0451 NC_007793.1 508737 509261 D identified by match to protein family HMM PF00583; acetyltransferase 508737..509261 Staphylococcus aureus subsp. aureus USA300_FPR3757 3915375 YP_493164.1 CDS dnaX NC_007793.1 509354 511027 D identified by match to protein family HMM PF00004; match to protein family HMM TIGR02397; DNA polymerase III subunit gamma and tau 509354..511027 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914168 YP_493165.1 CDS SAUSA300_0453 NC_007793.1 511117 511434 D identified by match to protein family HMM PF02575; match to protein family HMM TIGR00103; hypothetical protein 511117..511434 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913789 YP_493166.1 CDS recR NC_007793.1 511441 512037 D involved in a recombinational process of DNA repair, independent of the recBC complex; recombination protein RecR 511441..512037 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914820 YP_493167.1 CDS SAUSA300_0458 NC_007793.1 518801 520138 D identified by match to protein family HMM PF01276; match to protein family HMM PF03711; Orn/Lys/Arg decarboxylase 518801..520138 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913591 YP_493168.1 CDS tmk NC_007793.1 520140 520757 D catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP); thymidylate kinase 520140..520757 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914198 YP_493169.1 CDS SAUSA300_0460 NC_007793.1 520785 521114 D identified by match to protein family HMM PF06153; hypothetical protein 520785..521114 Staphylococcus aureus subsp. aureus USA300_FPR3757 3915046 YP_493170.1 CDS holB NC_007793.1 521328 522254 D DNA polymerase III subunit delta 521328..522254 Staphylococcus aureus subsp. aureus USA300_FPR3757 3912970 YP_493171.1 CDS SAUSA300_0462 NC_007793.1 522255 523058 D identified by match to protein family HMM PF04468; hypothetical protein 522255..523058 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913343 YP_493172.2 CDS SAUSA300_0463 NC_007793.1 523075 523422 D in Bacillus subtilis this protein is involved in the negative regulation of DNA replication initiation; interacts with DnaN and DnaA; DNA replication intiation control protein YabA 523075..523422 Staphylococcus aureus subsp. aureus USA300_FPR3757 3915001 YP_493173.1 CDS SAUSA300_0464 NC_007793.1 523696 524421 D identified by match to protein family HMM PF05175; hypothetical protein 523696..524421 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913248 YP_493174.1 CDS SAUSA300_0465 NC_007793.1 524414 524662 D identified by match to protein family HMM PF01541; hypothetical protein 524414..524662 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913429 YP_493175.1 CDS SAUSA300_0466 NC_007793.1 524664 525503 D identified by match to protein family HMM PF00590; match to protein family HMM TIGR00096; hypothetical protein 524664..525503 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913078 YP_493176.1 CDS metS NC_007793.1 525789 527762 D methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase 525789..527762 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914320 YP_493177.1 CDS SAUSA300_0468 NC_007793.1 527793 528566 D identified by match to protein family HMM PF01026; match to protein family HMM PF04909; match to protein family HMM TIGR00010; TatD family hydrolase 527793..528566 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914749 YP_493178.1 CDS SAUSA300_0469 NC_007793.1 528733 529269 D identified by match to protein family HMM PF01751; match to protein family HMM TIGR00334; hypothetical protein 528733..529269 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914748 YP_493179.1 CDS ksgA NC_007793.1 529280 530173 D catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; dimethyladenosine transferase 529280..530173 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913329 YP_493180.1 CDS SAUSA300_0471 NC_007793.1 530273 530536 D identified by similarity to SP:P37466; match to protein family HMM PF06257; hypothetical protein 530273..530536 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913928 YP_493181.1 CDS ipk NC_007793.1 530846 531694 D An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 530846..531694 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913219 YP_493182.1 CDS purR NC_007793.1 531708 532532 D identified by match to protein family HMM PF00156; match to protein family HMM TIGR01743; pur operon repressor 531708..532532 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913026 YP_493183.1 CDS SAUSA300_0474 NC_007793.1 532549 532929 D identified by match to protein family HMM PF01042; match to protein family HMM TIGR00004; putative endoribonuclease L-PSP 532549..532929 Staphylococcus aureus subsp. aureus USA300_FPR3757 3915311 YP_493184.1 CDS SAUSA300_0475 NC_007793.1 533001 533303 D stage V sporulation protein G; essential for spore formation and a negative regulator of asymmetric septation in Bacillus; involved in methicillin-resistance, biofilm formation and capsular polysaccharide synthesis in Staphylococcus; regulatory protein SpoVG 533001..533303 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913864 YP_493185.1 CDS SAUSA300_0476 NC_007793.1 533493 533624 D hypothetical protein 533493..533624 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913801 YP_493186.1 CDS glmU NC_007793.1 533647 534999 D forms a homotrimer; catalyzes the acetylation of glucosamine-1-phosphate and uridylation of N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc; function in cell wall synthesis; bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase 533647..534999 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914305 YP_493187.1 CDS prs NC_007793.1 535146 536111 D catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP; ribose-phosphate pyrophosphokinase 535146..536111 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913205 YP_493188.1 CDS SAUSA300_0479 NC_007793.1 536261 536914 D the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response; 50S ribosomal protein L25/general stress protein Ctc 536261..536914 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913178 YP_493189.1 CDS pth NC_007793.1 537225 537797 D Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase 537225..537797 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914920 YP_493190.1 CDS mfd NC_007793.1 537797 541303 D identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF02559; match to protein family HMM PF03461; match to protein family HMM PF04851; match to protein family HMM TIGR00580; transcription-repair coupling factor 537797..541303 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914616 YP_493191.1 CDS SAUSA300_0482 NC_007793.1 541293 542819 D identified by match to protein family HMM PF01943; polysaccharide biosynthesis protein 541293..542819 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914914 YP_493192.1 CDS SAUSA300_0483 NC_007793.1 542819 544012 D identified by match to protein family HMM PF00590; match to protein family HMM PF03819; tetrapyrrole methylase family protein 542819..544012 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914009 YP_493193.1 CDS SAUSA300_0484 NC_007793.1 544009 544272 D identified by match to protein family HMM PF01479; hypothetical protein 544009..544272 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914122 YP_493194.1 CDS SAUSA300_0485 NC_007793.1 544290 544682 D identified by match to protein family HMM PF04977; cell-division initiation protein 544290..544682 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913437 YP_493195.1 CDS SAUSA300_0486 NC_007793.1 544787 545188 D identified by match to protein family HMM PF00575; hypothetical protein 544787..545188 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913254 YP_493196.1 CDS SAUSA300_0487 NC_007793.1 545368 546663 D identified by match to protein family HMM PF01171; match to protein family HMM TIGR02432; match to protein family HMM TIGR02433; hypothetical protein 545368..546663 Staphylococcus aureus subsp. aureus USA300_FPR3757 3912997 YP_493197.1 CDS hpt NC_007793.1 546656 547207 D identified by match to protein family HMM PF00156; match to protein family HMM TIGR01203; hypoxanthine phosphoribosyltransferase 546656..547207 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914718 YP_493198.1 CDS SAUSA300_0489 NC_007793.1 547464 549557 D identified by match to protein family HMM PF00004; match to protein family HMM PF01434; match to protein family HMM PF06480; match to protein family HMM PF07728; match to protein family HMM TIGR01241; putative cell division protein FtsH 547464..549557 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914660 YP_493199.1 CDS hslO NC_007793.1 549786 550667 D becomes active under oxidative stress; four conserved cysteines bind a zinc atom when they are in the reduced state and the enzyme is inactive; oxidative stress results in oxidized cysteines, release of zinc, and binding of Hsp33 to aggregation-prone proteins; forms dimers and higher order oligomers; Hsp33-like chaperonin 549786..550667 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914497 YP_493200.1 CDS cysK NC_007793.1 550846 551778 D identified by match to protein family HMM PF00291; match to protein family HMM TIGR01136; match to protein family HMM TIGR01139; cysteine synthase A 550846..551778 Staphylococcus aureus subsp. aureus USA300_FPR3757 3912911 YP_493201.1 CDS folP NC_007793.1 551994 552797 D identified by match to protein family HMM PF00809; match to protein family HMM TIGR01496; dihydropteroate synthase 551994..552797 Staphylococcus aureus subsp. aureus USA300_FPR3757 3915320 YP_493202.1 CDS folB NC_007793.1 552775 553140 D identified by match to protein family HMM PF02152; match to protein family HMM TIGR00525; match to protein family HMM TIGR00526; dihydroneopterin aldolase 552775..553140 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914528 YP_493203.1 CDS folK NC_007793.1 553137 553613 D identified by match to protein family HMM PF01288; match to protein family HMM TIGR01498; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase 553137..553613 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913995 YP_493204.1 CDS SAUSA300_0495 NC_007793.1 554007 554099 D hypothetical protein 554007..554099 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913926 YP_493205.1 CDS lysS NC_007793.1 554152 555639 D class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1; lysyl-tRNA synthetase 554152..555639 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914113 YP_493206.1 CDS SAUSA300_0503 NC_007793.1 562046 563428 R identified by match to protein family HMM PF00392; transcriptional regulator, gntR family protein complement(562046..563428) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913503 YP_493207.1 CDS SAUSA300_0504 NC_007793.1 563532 564419 D with PdxT forms pyridoxal 5'-phosphate from glutamine, either ribose 5-phosphate or ribulose 5-phosphate, and either glyceraldehyde 3-phosphate or dihydroxyacetone phosphate; pyridoxal biosynthesis lyase PdxS 563532..564419 Staphylococcus aureus subsp. aureus USA300_FPR3757 3915160 YP_493208.1 CDS SAUSA300_0505 NC_007793.1 564423 564983 D with PdxST is involved in the biosynthesis of pyridoxal 5'-phosphate; PdxT catalyzes the hydrolysis of glutamine to glutamate and ammonia; PdxS utilizes the ammonia to synthesize pyridoxal 5'-phosphate; glutamine amidotransferase subunit PdxT 564423..564983 Staphylococcus aureus subsp. aureus USA300_FPR3757 3915116 YP_493209.1 CDS nupC NC_007793.1 565191 566405 R identified by match to protein family HMM PF01773; match to protein family HMM PF07662; match to protein family HMM PF07670; pyrimidine nucleoside transport protein complement(565191..566405) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914199 YP_493210.1 CDS ctsR NC_007793.1 566563 567024 D identified by match to protein family HMM PF05848; transcriptional regulator CtsR 566563..567024 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913623 YP_493211.1 CDS SAUSA300_0508 NC_007793.1 567121 567609 D identified by match to protein family HMM PF02151; hypothetical protein 567121..567609 Staphylococcus aureus subsp. aureus USA300_FPR3757 3915211 YP_493212.1 CDS SAUSA300_0509 NC_007793.1 567599 568606 D identified by match to protein family HMM PF00217; ATP:guanido phosphotransferase 567599..568606 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913359 YP_493213.1 CDS clpC NC_007793.1 568620 571076 D identified by match to protein family HMM PF00004; match to protein family HMM PF02151; match to protein family HMM PF02861; match to protein family HMM PF07724; match to protein family HMM PF07728; endopeptidase 568620..571076 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913940 YP_493214.2 CDS radA NC_007793.1 571561 572925 D Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA 571561..572925 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914395 YP_493215.1 CDS SAUSA300_0512 NC_007793.1 572968 574023 D identified by match to protein family HMM PF01850; match to protein family HMM PF01938; PilT domain-containing protein 572968..574023 Staphylococcus aureus subsp. aureus USA300_FPR3757 3915058 YP_493216.1 CDS gltX NC_007793.1 574580 576034 D Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase 574580..576034 Staphylococcus aureus subsp. aureus USA300_FPR3757 3912798 YP_493217.1 CDS cysE NC_007793.1 576457 577104 D identified by match to protein family HMM PF00132; match to protein family HMM TIGR01172; serine acetyltransferase 576457..577104 Staphylococcus aureus subsp. aureus USA300_FPR3757 3915203 YP_493218.1 CDS cysS NC_007793.1 577088 578488 D catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase 577088..578488 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914917 YP_493219.1 CDS SAUSA300_0516 NC_007793.1 578481 578885 D identified by match to protein family HMM PF00636; hypothetical protein 578481..578885 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913465 YP_493220.1 CDS SAUSA300_0517 NC_007793.1 578893 579639 D identified by match to protein family HMM PF00588; match to protein family HMM PF08032; match to protein family HMM TIGR00186; RNA methyltransferase 578893..579639 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914853 YP_493221.1 CDS SAUSA300_0518 NC_007793.1 579639 580163 D identified by match to protein family HMM PF05991; hypothetical protein 579639..580163 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913336 YP_493222.1 CDS SAUSA300_0519 NC_007793.1 580244 580813 D identified by match to protein family HMM PF04542; hypothetical protein 580244..580813 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914269 YP_493223.1 CDS secE NC_007793.1 581127 581309 D forms a complex with SecY and SecG; SecYEG forms a putative protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force; preprotein translocase subunit SecE 581127..581309 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913684 YP_493224.1 CDS nusG NC_007793.1 581322 581870 D identified by match to protein family HMM PF00467; match to protein family HMM PF02357; match to protein family HMM TIGR00922; transcription antitermination protein 581322..581870 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913140 YP_493225.1 CDS rplK NC_007793.1 582051 582473 D binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 582051..582473 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913722 YP_493226.1 CDS rplA NC_007793.1 582681 583373 D in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 582681..583373 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913604 YP_493227.1 CDS rplJ NC_007793.1 583645 584145 D binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 583645..584145 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913441 YP_493228.1 CDS rplL NC_007793.1 584188 584556 D present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; 50S ribosomal protein L7/L12 584188..584556 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914128 YP_493229.1 CDS SAUSA300_0526 NC_007793.1 584731 585339 D identified by match to protein family HMM PF05175; methyltransferase small subunit 584731..585339 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913701 YP_493230.2 CDS rpoB NC_007793.1 585554 589105 D DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta 585554..589105 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914836 YP_493231.1 CDS rpoC NC_007793.1 589269 592865 D DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' 589269..592865 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913726 YP_493232.1 CDS SAUSA300_0529 NC_007793.1 593002 593256 D in Bacillus subtilis this non-essential protein associates with the ribosome; putative ribosomal protein L7Ae-like 593002..593256 Staphylococcus aureus subsp. aureus USA300_FPR3757 3912782 YP_493233.1 CDS rpsL NC_007793.1 593354 593767 D interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 593354..593767 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914280 YP_493234.1 CDS SAUSA300_0531 NC_007793.1 <593924 594304 D truncated; authenticated frameshift; identified by match to protein family HMM PF00177; match to protein family HMM TIGR01029; 30S ribosomal protein S7 <593924..594304 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914900 YP_493235.1 CDS fusA NC_007793.1 594427 596508 D EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 594427..596508 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913895 YP_493236.1 CDS tuf NC_007793.1 596725 597909 D EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 596725..597909 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913938 YP_493237.1 CDS SAUSA300_0534 NC_007793.1 598191 599366 R identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891; amidohydrolase complement(598191..599366) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915138 YP_493238.1 CDS SAUSA300_0535 NC_007793.1 599537 600724 D catalyzes the formation of 2-amino-3-oxobutanoate from acetyl-CoA and glycine; 2-amino-3-ketobutyrate coenzyme A ligase 599537..600724 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914622 YP_493239.1 CDS SAUSA300_0536 NC_007793.1 600990 601868 D Hsp31 stabilizes early unfolding protein intermediates under severe heat stress; chaperone protein HchA 600990..601868 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914160 YP_493240.1 CDS SAUSA300_0537 NC_007793.1 602028 603665 D catalyzes the phosphorylation of ribulose to ribulose 5-phosphate; ribulokinase 602028..603665 Staphylococcus aureus subsp. aureus USA300_FPR3757 3915056 YP_493241.1 CDS SAUSA300_0538 NC_007793.1 603879 604844 D identified by match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF07993; NAD-dependent epimerase/dehydratase family protein 603879..604844 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914956 YP_493242.1 CDS ilvE NC_007793.1 605179 606255 D catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; branched-chain amino acid aminotransferase 605179..606255 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914670 YP_493243.1 CDS SAUSA300_0540 NC_007793.1 606505 607188 D identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549; HAD family hydrolase 606505..607188 Staphylococcus aureus subsp. aureus USA300_FPR3757 3912990 YP_493244.1 CDS SAUSA300_0541 NC_007793.1 607304 607966 R identified by match to protein family HMM PF01712; deoxynucleoside kinase family protein complement(607304..607966) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913950 YP_493245.1 CDS SAUSA300_0542 NC_007793.1 607959 608576 R identified by match to protein family HMM PF01712; deoxynucleoside kinase family protein complement(607959..608576) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915246 YP_493246.1 CDS SAUSA300_0543 NC_007793.1 608643 609113 D identified by match to protein family HMM PF00383; putative deaminase 608643..609113 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914181 YP_493247.1 CDS SAUSA300_0544 NC_007793.1 609260 610129 D identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484; HAD superfamily hydrolase 609260..610129 Staphylococcus aureus subsp. aureus USA300_FPR3757 3912977 YP_493248.1 CDS SAUSA300_0545 NC_007793.1 610150 610716 D identified by match to protein family HMM PF02525; match to protein family HMM PF03358; hypothetical protein 610150..610716 Staphylococcus aureus subsp. aureus USA300_FPR3757 3915184 YP_493249.1 CDS sdrC NC_007793.1 611147 613990 D identified by match to protein family HMM PF00746; match to protein family HMM PF04650; match to protein family HMM PF05738; match to protein family HMM TIGR01167; match to protein family HMM TIGR01168; sdrC protein 611147..613990 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914310 YP_493250.1 CDS sdrD NC_007793.1 614357 618502 D identified by match to protein family HMM PF00746; match to protein family HMM PF04650; match to protein family HMM PF05738; match to protein family HMM TIGR01167; match to protein family HMM TIGR01168; sdrD protein 614357..618502 Staphylococcus aureus subsp. aureus USA300_FPR3757 3912812 YP_493251.1 CDS sdrE NC_007793.1 618896 622360 D identified by match to protein family HMM PF00746; match to protein family HMM PF04650; match to protein family HMM PF05738; match to protein family HMM TIGR01167; match to protein family HMM TIGR01168; sdrE protein 618896..622360 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914582 YP_493252.1 CDS SAUSA300_0549 NC_007793.1 622479 623951 D identified by match to protein family HMM PF00534; glycosyl transferase, group 1 family protein 622479..623951 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914743 YP_493253.1 CDS SAUSA300_0550 NC_007793.1 624075 625565 R identified by match to protein family HMM PF00534; glycosyl transferase, group 1 family protein complement(624075..625565) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914504 YP_493254.1 CDS SAUSA300_0551 NC_007793.1 625847 626725 R similar protein in Methanocaldococcus converts GTP to 7,8-dihydro-D-neopterin 2',3'-cyclic phosphate as the first step in methanopterin biosynthesis; putative GTP cyclohydrolase complement(625847..626725) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913518 YP_493255.1 CDS SAUSA300_0552 NC_007793.1 626738 627403 R identified by match to protein family HMM PF02585; hypothetical protein complement(626738..627403) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913859 YP_493256.1 CDS SAUSA300_0553 NC_007793.1 627417 627779 R hypothetical protein complement(627417..627779) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914453 YP_493257.1 CDS SAUSA300_0554 NC_007793.1 628055 628813 D identified by match to protein family HMM PF01182; glucosamine-6-phosphate isomerase 628055..628813 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913912 YP_493258.1 CDS SAUSA300_0555 NC_007793.1 628890 629522 D identified by match to protein family HMM PF00215; putative hexulose-6-phosphate synthase 628890..629522 Staphylococcus aureus subsp. aureus USA300_FPR3757 3915363 YP_493259.2 CDS SAUSA300_0556 NC_007793.1 629524 630072 D identified by match to protein family HMM PF01380; SIS domain-containing protein 629524..630072 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914231 YP_493260.1 CDS SAUSA300_0557 NC_007793.1 630185 630832 D identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549; HAD family hydrolase 630185..630832 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913455 YP_493261.1 CDS SAUSA300_0558 NC_007793.1 631334 632734 D identified by match to protein family HMM PF00083; match to protein family HMM PF07690; putative proline/betaine transporter 631334..632734 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914545 YP_493262.1 CDS SAUSA300_0559 NC_007793.1 633278 634654 D identified by match to protein family HMM PF00501; putative substrate--CoA ligase 633278..634654 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914799 YP_493263.1 CDS vraB NC_007793.1 634656 635795 D identified by match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930; acetyl-CoA c-acetyltransferase 634656..635795 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914850 YP_493264.1 CDS SAUSA300_0561 NC_007793.1 635770 636135 D hypothetical protein 635770..636135 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914410 YP_493265.1 CDS thiD NC_007793.1 637282 638112 R identified by match to protein family HMM TIGR00097; phosphomethylpyrimidine kinase complement(637282..638112) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915302 YP_493266.1 CDS ung NC_007793.1 638296 638952 D Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine; uracil-DNA glycosylase 638296..638952 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913424 YP_493267.1 CDS SAUSA300_0564 NC_007793.1 638953 639333 D hypothetical protein 638953..639333 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914512 YP_493268.1 CDS SAUSA300_0565 NC_007793.1 639466 639834 D identified by match to protein family HMM PF04241; hypothetical protein 639466..639834 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913121 YP_493269.1 CDS SAUSA300_0566 NC_007793.1 639955 641439 D identified by match to protein family HMM PF00324; amino acid permease 639955..641439 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913204 YP_493270.1 CDS SAUSA300_0567 NC_007793.1 641581 642033 R hypothetical protein complement(641581..642033) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913579 YP_493271.1 CDS SAUSA300_0568 NC_007793.1 642046 642696 R identified by match to protein family HMM PF06738; hypothetical protein complement(642046..642696) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913234 YP_493272.1 CDS SAUSA300_0569 NC_007793.1 643359 644111 R identified by match to protein family HMM PF06778; putative heme peroxidase complement(643359..644111) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915093 YP_493273.1 CDS eutD NC_007793.1 644279 645265 D in Salmonella this enzyme is required for ethanolamine catabolism; has higher affinity for CoA than Pta; phosphotransacetylase 644279..645265 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913780 YP_493274.1 CDS SAUSA300_0571 NC_007793.1 645340 646104 D lipoate-protein ligase A family protein 645340..646104 Staphylococcus aureus subsp. aureus USA300_FPR3757 3915306 YP_493275.1 CDS mvk NC_007793.1 646691 647611 D identified by match to protein family HMM PF00288; match to protein family HMM TIGR00549; mevalonate kinase 646691..647611 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913643 YP_493276.1 CDS mvaD NC_007793.1 647616 648599 D identified by match to protein family HMM PF00288; match to protein family HMM TIGR01240; mevalonate diphosphate decarboxylase 647616..648599 Staphylococcus aureus subsp. aureus USA300_FPR3757 3915326 YP_493277.1 CDS SAUSA300_0574 NC_007793.1 648612 649688 D identified by match to protein family HMM PF00288; match to protein family HMM TIGR01220; phosphomevalonate kinase 648612..649688 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913148 YP_493278.1 CDS SAUSA300_0575 NC_007793.1 649865 650206 D hypothetical protein 649865..650206 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913021 YP_493279.1 CDS SAUSA300_0576 NC_007793.1 650258 651580 R identified by match to protein family HMM PF00070; match to protein family HMM PF02852; match to protein family HMM PF07992; putative pyridine nucleotide-disulfide oxidoreductase complement(650258..651580) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915267 YP_493280.1 CDS SAUSA300_0577 NC_007793.1 651567 651983 R identified by match to protein family HMM PF02082; hypothetical protein complement(651567..651983) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914421 YP_493281.1 CDS SAUSA300_0578 NC_007793.1 652065 652166 D hypothetical protein 652065..652166 Staphylococcus aureus subsp. aureus USA300_FPR3757 3912829 YP_493282.1 CDS SAUSA300_0579 NC_007793.1 652632 654041 D hypothetical protein 652632..654041 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913426 YP_493283.1 CDS SAUSA300_0580 NC_007793.1 654045 654671 D identified by match to protein family HMM PF04276; match to protein family HMM TIGR01218; hypothetical protein 654045..654671 Staphylococcus aureus subsp. aureus USA300_FPR3757 3915131 YP_493284.1 CDS SAUSA300_0581 NC_007793.1 654797 655438 D identified by match to protein family HMM PF04276; match to protein family HMM TIGR01218; hypothetical protein 654797..655438 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914016 YP_493285.1 CDS SAUSA300_0582 NC_007793.1 655598 656143 D identified by match to protein family HMM PF04276; match to protein family HMM TIGR01218; hypothetical protein 655598..656143 Staphylococcus aureus subsp. aureus USA300_FPR3757 3912932 YP_493286.1 CDS SAUSA300_0583 NC_007793.1 657043 657663 D identified by match to protein family HMM PF04276; match to protein family HMM TIGR01218; hypothetical protein 657043..657663 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913820 YP_493287.1 CDS SAUSA300_0584 NC_007793.1 657794 658435 D identified by match to protein family HMM PF04276; match to protein family HMM TIGR01218; hypothetical protein 657794..658435 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914038 YP_493288.1 CDS SAUSA300_0585 NC_007793.1 659564 660193 D identified by match to protein family HMM PF04276; match to protein family HMM TIGR01218; hypothetical protein 659564..660193 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914721 YP_493289.1 CDS SAUSA300_0586 NC_007793.1 660389 660958 D identified by match to protein family HMM PF04276; match to protein family HMM TIGR01218; hypothetical protein 660389..660958 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913889 YP_493290.1 CDS SAUSA300_0587 NC_007793.1 660995 661630 D identified by match to protein family HMM PF04276; match to protein family HMM TIGR01218; hypothetical protein 660995..661630 Staphylococcus aureus subsp. aureus USA300_FPR3757 3915379 YP_493291.1 CDS SAUSA300_0588 NC_007793.1 661865 662491 D identified by match to protein family HMM PF04276; match to protein family HMM TIGR01218; hypothetical protein 661865..662491 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914086 YP_493292.1 CDS SAUSA300_0589 NC_007793.1 662761 663699 D identified by match to protein family HMM PF00248; aldo/keto reductase family protein 662761..663699 Staphylococcus aureus subsp. aureus USA300_FPR3757 3912767 YP_493293.1 CDS SAUSA300_0590 NC_007793.1 663910 664446 D identified by match to protein family HMM PF03358; hypothetical protein 663910..664446 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913298 YP_493294.1 CDS SAUSA300_0591 NC_007793.1 664615 665091 D identified by match to protein family HMM PF00583; acetyltransferase 664615..665091 Staphylococcus aureus subsp. aureus USA300_FPR3757 3915012 YP_493295.1 CDS SAUSA300_0592 NC_007793.1 665131 666426 D identified by match to protein family HMM PF01966; hypothetical protein 665131..666426 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914418 YP_493296.1 CDS SAUSA300_0593 NC_007793.1 666454 666975 D hypothetical protein 666454..666975 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914330 YP_493297.1 CDS adh NC_007793.1 667474 668484 D similar to zinc-dependent eukaryotic ADH enzymes and distinct from fermentative ADHs; alcohol dehydrogenase 667474..668484 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914232 YP_493298.1 CDS SAUSA300_0595 NC_007793.1 668792 669175 D hypothetical protein 668792..669175 Staphylococcus aureus subsp. aureus USA300_FPR3757 3912954 YP_493299.1 CDS argS NC_007793.1 669172 670833 D catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase 669172..670833 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914329 YP_493300.1 CDS SAUSA300_0597 NC_007793.1 671221 671856 D putative endonuclease III 671221..671856 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913458 YP_493301.1 CDS SAUSA300_0598 NC_007793.1 672295 673122 D identified by match to protein family HMM PF01497; putative iron compound ABC transporter iron compound-binding protein 672295..673122 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913909 YP_493302.1 CDS SAUSA300_0599 NC_007793.1 673270 674220 D identified by match to protein family HMM PF01032; iron compound ABC transporter permease 673270..674220 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914445 YP_493303.1 CDS SAUSA300_0600 NC_007793.1 674275 674994 D identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; match to protein family HMM TIGR01549; HAD superfamily hydrolase 674275..674994 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914901 YP_493304.1 CDS SAUSA300_0601 NC_007793.1 674978 675778 D identified by match to protein family HMM PF00561; alpha/beta fold family hydrolase 674978..675778 Staphylococcus aureus subsp. aureus USA300_FPR3757 3912776 YP_493305.1 CDS SAUSA300_0602 NC_007793.1 675914 676420 D hypothetical protein 675914..676420 Staphylococcus aureus subsp. aureus USA300_FPR3757 3915158 YP_493306.1 CDS SAUSA300_0603 NC_007793.1 676582 677298 D hypothetical protein 676582..677298 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913044 YP_493307.1 CDS SAUSA300_0604 NC_007793.1 677467 678255 D identified by match to protein family HMM PF00561; alpha/beta fold family hydrolase 677467..678255 Staphylococcus aureus subsp. aureus USA300_FPR3757 3915396 YP_493308.1 CDS sarA NC_007793.1 678506 678880 R identified by match to protein family HMM TIGR01889; accessory regulator A complement(678506..678880) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913524 YP_493309.1 CDS SAUSA300_0606 NC_007793.1 679828 680721 R identified by match to protein family HMM PF04657; hypothetical protein complement(679828..680721) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913273 YP_493310.1 CDS SAUSA300_0607 NC_007793.1 680952 681176 R hypothetical protein complement(680952..681176) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913348 YP_493311.1 CDS SAUSA300_0608 NC_007793.1 681193 681396 R hypothetical protein complement(681193..681396) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913821 YP_493312.1 CDS SAUSA300_0609 NC_007793.1 681555 682115 D identified by match to protein family HMM PF00589; phage integrase family protein 681555..682115 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913634 YP_493313.1 CDS SAUSA300_0610 NC_007793.1 682134 684536 D subunit A of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; putative monovalent cation/H+ antiporter subunit A 682134..684536 Staphylococcus aureus subsp. aureus USA300_FPR3757 3912835 YP_493314.1 CDS SAUSA300_0611 NC_007793.1 684523 684948 D subunit B of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; putative monovalent cation/H+ antiporter subunit B 684523..684948 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914424 YP_493315.1 CDS SAUSA300_0612 NC_007793.1 684945 685289 D subunit C of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; putative monovalent cation/H+ antiporter subunit C 684945..685289 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913805 YP_493316.1 CDS SAUSA300_0613 NC_007793.1 685279 686775 D subunit D of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; contains an oxidoreductase domain; catalyzes the transfer of electrons from NADH to ubiquinone; in S. meliloti it is known to be involved specifically with K+ transport; putative monovalent cation/H+ antiporter subunit D 685279..686775 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913860 YP_493317.1 CDS SAUSA300_0614 NC_007793.1 686776 687258 D subunit E of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved specifically with K+ transport; putative monovalent cation/H+ antiporter subunit E 686776..687258 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914193 YP_493318.1 CDS SAUSA300_0615 NC_007793.1 687255 687557 D subunit F of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; putative monovalent cation/H+ antiporter subunit F 687255..687557 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913261 YP_493319.1 CDS SAUSA300_0616 NC_007793.1 687532 687969 D subunit G of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; putative monovalent cation/H+ antiporter subunit G 687532..687969 Staphylococcus aureus subsp. aureus USA300_FPR3757 3915394 YP_493320.1 CDS SAUSA300_0617 NC_007793.1 688348 690351 D identified by match to protein family HMM PF00999; Na+/H+ antiporter 688348..690351 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913817 YP_493321.1 CDS SAUSA300_0618 NC_007793.1 691511 692440 R identified by match to protein family HMM PF01297; ABC transporter substrate-binding protein complement(691511..692440) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914552 YP_493322.1 CDS SAUSA300_0619 NC_007793.1 692437 693273 R identified by match to protein family HMM PF00950; ABC transporter permease complement(692437..693273) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915301 YP_493323.1 CDS SAUSA300_0620 NC_007793.1 693267 694010 R identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein complement(693267..694010) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914296 YP_493324.1 CDS SAUSA300_0621 NC_007793.1 694132 694776 D identified by match to protein family HMM PF01325; match to protein family HMM PF02742; match to protein family HMM PF04023; iron-dependent repressor 694132..694776 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914439 YP_493325.1 CDS SAUSA300_0622 NC_007793.1 694856 695608 R hypothetical protein complement(694856..695608) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914733 YP_493326.1 CDS tagA NC_007793.1 695844 696608 D identified by match to protein family HMM PF03808; match to protein family HMM TIGR00696; teichoic acid biosynthesis protein 695844..696608 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913782 YP_493327.1 CDS tagH NC_007793.1 696669 697463 R with TagG is involved in the export of teichoic acids; teichoic acids export protein ATP-binding subunit complement(696669..697463) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913206 YP_493328.1 CDS tagG NC_007793.1 697810 698622 D identified by match to protein family HMM PF01061; teichoic acid ABC transporter protein 697810..698622 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914249 YP_493329.1 CDS tagB NC_007793.1 698721 699824 D identified by match to protein family HMM PF04464; teichoic acid biosynthesis protein B 698721..699824 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914554 YP_493330.1 CDS tagX NC_007793.1 699821 700882 D identified by match to protein family HMM PF00535; teichoic acid biosynthesis protein X 699821..700882 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913355 YP_493331.1 CDS SAUSA300_0628 NC_007793.1 700945 701343 D identified by match to protein family HMM PF01467; match to protein family HMM TIGR00125; match to protein family HMM TIGR01518; glycerol-3-phosphate cytidylyltransferase 700945..701343 Staphylococcus aureus subsp. aureus USA300_FPR3757 3912800 YP_493332.1 CDS pbp4 NC_007793.1 701460 702755 R identified by match to protein family HMM PF00144; match to protein family HMM PF00768; penicillin-binding protein 4 complement(701460..702755) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914502 YP_493333.1 CDS SAUSA300_0630 NC_007793.1 703176 704903 D identified by match to protein family HMM PF00005; match to protein family HMM PF00664; ABC transporter ATP-binding protein 703176..704903 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913454 YP_493334.1 CDS SAUSA300_0631 NC_007793.1 705262 706491 D identified by match to protein family HMM PF01773; match to protein family HMM PF07662; putative nucleoside transporter 705262..706491 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914544 YP_493335.1 CDS SAUSA300_0632 NC_007793.1 707016 707849 D identified by match to protein family HMM PF02588; hypothetical protein 707016..707849 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914402 YP_493336.1 CDS fhuA NC_007793.1 708131 708928 D identified by match to protein family HMM PF00005; ferrichrome transport ATP-binding protein fhuA 708131..708928 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913073 YP_493337.1 CDS fhuB NC_007793.1 708964 709968 D identified by match to protein family HMM PF01032; ferrichrome transport permease fhuB 708964..709968 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914614 YP_493338.1 CDS fhuG NC_007793.1 709965 710981 D identified by match to protein family HMM PF01032; ferrichrome transport permease fhuG 709965..710981 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914902 YP_493339.1 CDS SAUSA300_0636 NC_007793.1 711215 712183 D with DhaL and DhaM forms dihydroxyacetone kinase, which is responsible for phosphorylating dihydroxyacetone; DhaK is the dihydroxyacetone binding subunit of the dihydroxyacetone kinase; dihydroxyacetone kinase subunit DhaK 711215..712183 Staphylococcus aureus subsp. aureus USA300_FPR3757 3915117 YP_493340.1 CDS SAUSA300_0637 NC_007793.1 712225 712809 D identified by match to protein family HMM PF02734; match to protein family HMM TIGR02365; dihydroxyacetone kinase subunit DhaL 712225..712809 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913422 YP_493341.1 CDS SAUSA300_0638 NC_007793.1 712802 713164 D identified by match to protein family HMM PF03610; match to protein family HMM TIGR02364; phosphotransferase mannnose-specific family component IIA 712802..713164 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913220 YP_493342.1 CDS SAUSA300_0639 NC_007793.1 713280 713777 D hypothetical protein 713280..713777 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914216 YP_493343.1 CDS SAUSA300_0640 NC_007793.1 714233 715300 D identified by match to protein family HMM PF05525; hypothetical protein 714233..715300 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914335 YP_493344.1 CDS SAUSA300_0641 NC_007793.1 715451 716494 D identified by match to protein family HMM PF07859; putative lipase/esterase 715451..716494 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913804 YP_493345.1 CDS SAUSA300_0642 NC_007793.1 716823 717251 D hypothetical protein 716823..717251 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913378 YP_493346.1 CDS SAUSA300_0643 NC_007793.1 717460 717966 R identified by match to protein family HMM PF00583; acetyltransferase complement(717460..717966) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914890 YP_493347.1 CDS SAUSA300_0644 NC_007793.1 718079 719002 D hypothetical protein 718079..719002 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914460 YP_493348.1 CDS SAUSA300_0645 NC_007793.1 719018 719692 D identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator 719018..719692 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914136 YP_493349.1 CDS SAUSA300_0646 NC_007793.1 719685 720725 D identified by match to protein family HMM PF00512; match to protein family HMM PF02518; sensor histidine kinase 719685..720725 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913958 YP_493350.1 CDS SAUSA300_0647 NC_007793.1 720869 721630 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 720869..721630 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913534 YP_493351.1 CDS SAUSA300_0648 NC_007793.1 721620 723509 D ABC transporter permease 721620..723509 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913048 YP_493352.1 CDS SAUSA300_0649 NC_007793.1 724234 724851 D identified by match to protein family HMM PF01865; hypothetical protein 724234..724851 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913374 YP_493353.1 CDS SAUSA300_0650 NC_007793.1 724867 725874 D identified by match to protein family HMM PF01384; phosphate transporter family protein 724867..725874 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914090 YP_493354.1 CDS SAUSA300_0651 NC_007793.1 726462 727259 R identified by match to protein family HMM PF01476; match to protein family HMM PF05257; CHAP domain-contain protein complement(726462..727259) Staphylococcus aureus subsp. aureus USA300_FPR3757 3912823 YP_493355.1 CDS SAUSA300_0652 NC_007793.1 727620 728264 D hypothetical protein 727620..728264 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914425 YP_493356.1 CDS SAUSA300_0653 NC_007793.1 728961 730940 D two frameshifts, both authenticated; identified by match to protein family HMM PF00165; AraC family transcriptional regulator 728961..730940 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913956 YP_493357.1 CDS sarX NC_007793.1 731190 731615 D identified by match to protein family HMM TIGR01889; hypothetical protein 731190..731615 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914353 YP_493358.1 CDS SAUSA300_0655 NC_007793.1 731805 732521 D identified by match to protein family HMM PF01709; match to protein family HMM TIGR01033; hypothetical protein 731805..732521 Staphylococcus aureus subsp. aureus USA300_FPR3757 3912854 YP_493359.1 CDS SAUSA300_0656 NC_007793.1 732521 732994 D identified by match to protein family HMM PF06172; hypothetical protein 732521..732994 Staphylococcus aureus subsp. aureus USA300_FPR3757 3912779 YP_493360.1 CDS SAUSA300_0657 NC_007793.1 733347 733991 D identified by match to protein family HMM PF04167; hypothetical protein 733347..733991 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913068 YP_493361.1 CDS SAUSA300_0658 NC_007793.1 734107 734973 D identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator 734107..734973 Staphylococcus aureus subsp. aureus USA300_FPR3757 3915188 YP_493362.1 CDS SAUSA300_0659 NC_007793.1 735243 736463 D identified by match to protein family HMM PF07690; sugar efflux transporter 735243..736463 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913467 YP_493363.1 CDS SAUSA300_0660 NC_007793.1 736460 736948 D identified by match to protein family HMM PF04306; hypothetical protein 736460..736948 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914647 YP_493364.1 CDS SAUSA300_0661 NC_007793.1 737047 737736 R hypothetical protein complement(737047..737736) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914818 YP_493365.1 CDS SAUSA300_0662 NC_007793.1 737863 738306 D identified by match to protein family HMM PF00583; acetyltransferase 737863..738306 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913431 YP_493366.1 CDS SAUSA300_0663 NC_007793.1 738373 738768 D hypothetical protein 738373..738768 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914709 YP_493367.1 CDS SAUSA300_0664 NC_007793.1 738906 739205 D hypothetical protein 738906..739205 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913996 YP_493368.1 CDS SAUSA300_0665 NC_007793.1 739285 739827 D identified by match to protein family HMM PF00583; acetyltransferase 739285..739827 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913778 YP_493369.1 CDS SAUSA300_0666 NC_007793.1 739923 740489 R identified by match to protein family HMM PF03641; match to protein family HMM TIGR00730; hypothetical protein complement(739923..740489) Staphylococcus aureus subsp. aureus USA300_FPR3757 3912890 YP_493370.1 CDS SAUSA300_0667 NC_007793.1 740491 740949 R identified by match to protein family HMM PF02639; hypothetical protein complement(740491..740949) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913654 YP_493371.1 CDS SAUSA300_0668 NC_007793.1 740952 741635 R hypothetical protein complement(740952..741635) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914908 YP_493372.1 CDS SAUSA300_0669 NC_007793.1 741807 742682 R BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell; undecaprenyl pyrophosphate phosphatase complement(741807..742682) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913331 YP_493373.1 CDS SAUSA300_0670 NC_007793.1 742895 744526 D identified by match to protein family HMM PF00005; match to protein family HMM PF00664; ABC transporter ATP-binding protein 742895..744526 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913740 YP_493374.1 CDS SAUSA300_0671 NC_007793.1 744523 746196 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 744523..746196 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914061 YP_493375.1 CDS SAUSA300_0672 NC_007793.1 746323 746766 R identified by match to protein family HMM PF01047; MarR family transcriptional regulator complement(746323..746766) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914945 YP_493376.1 CDS SAUSA300_0673 NC_007793.1 746993 747919 D identified by match to protein family HMM PF02492; match to protein family HMM PF07683; cobalamin synthesis protein/P47K family protein 746993..747919 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913745 YP_493377.1 CDS SAUSA300_0674 NC_007793.1 748022 748930 D identified by match to protein family HMM PF00248; aldo/keto reductase family oxidoreductase 748022..748930 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914030 YP_493378.1 CDS SAUSA300_0675 NC_007793.1 748965 749252 D hypothetical protein 748965..749252 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914581 YP_493379.1 CDS SAUSA300_0676 NC_007793.1 749535 751088 D identified by match to protein family HMM PF00939; match to protein family HMM PF03600; match to protein family HMM TIGR00785; anion transporter family protein 749535..751088 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914355 YP_493380.1 CDS SAUSA300_0677 NC_007793.1 751174 752547 D identified by match to protein family HMM PF03441; putative deoxyribodipyrimidine photolyase 751174..752547 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914645 YP_493381.1 CDS SAUSA300_0678 NC_007793.1 752983 753600 R identified by match to protein family HMM PF07099; hypothetical protein complement(752983..753600) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914060 YP_493382.1 CDS SAUSA300_0679 NC_007793.1 753786 754208 R identified by match to protein family HMM PF03479; hypothetical protein complement(753786..754208) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914328 YP_493383.1 CDS norA NC_007793.1 754417 755583 D identified by match to protein family HMM PF07690; match to protein family HMM TIGR00880; multi drug resistance protein 754417..755583 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914338 YP_493384.1 CDS SAUSA300_0681 NC_007793.1 755876 756328 D hypothetical protein 755876..756328 Staphylococcus aureus subsp. aureus USA300_FPR3757 3912805 YP_493385.1 CDS ybaK NC_007793.1 756502 756984 D identified by match to protein family HMM PF04073; match to protein family HMM TIGR00011; ybaK/ebsC protein 756502..756984 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914002 YP_493386.1 CDS SAUSA300_0683 NC_007793.1 757237 757998 D identified by match to protein family HMM PF00455; match to protein family HMM PF08220; DeoR family transcriptional regulator 757237..757998 Staphylococcus aureus subsp. aureus USA300_FPR3757 3912858 YP_493387.1 CDS fruB NC_007793.1 757995 758915 D identified by match to protein family HMM PF00294; fructose 1-phosphate kinase 757995..758915 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913038 YP_493388.1 CDS fruA NC_007793.1 758921 760879 D identified by match to protein family HMM PF00359; match to protein family HMM PF02378; match to protein family HMM PF02379; match to protein family HMM TIGR00829; match to protein family HMM TIGR00848; match to protein family HMM TIGR01427; fructose specific permease 758921..760879 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914949 YP_493389.1 CDS nagA NC_007793.1 761187 762368 D identified by match to protein family HMM PF01979; match to protein family HMM TIGR00221; N-acetylglucosamine-6-phosphate deacetylase 761187..762368 Staphylococcus aureus subsp. aureus USA300_FPR3757 3915295 YP_493390.1 CDS SAUSA300_0687 NC_007793.1 762589 763938 D identified by match to protein family HMM PF00571; match to protein family HMM PF01595; match to protein family HMM PF03471; putative hemolysin 762589..763938 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914045 YP_493391.1 CDS SAUSA300_0688 NC_007793.1 764160 764999 D identified by match to protein family HMM PF00248; aldo/keto reductase family oxidoreductase 764160..764999 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914356 YP_493392.1 CDS SAUSA300_0689 NC_007793.1 765131 766114 D identified by match to protein family HMM PF00535; glycosyl transferase, group 2 family protein 765131..766114 Staphylococcus aureus subsp. aureus USA300_FPR3757 3915402 YP_493393.1 CDS saeS NC_007793.1 766186 767241 R identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; sensor histidine kinase SaeS complement(766186..767241) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913143 YP_493394.1 CDS saeR NC_007793.1 767241 767927 R identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator SaeR complement(767241..767927) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913605 YP_493395.1 CDS SAUSA300_0692 NC_007793.1 767902 768375 R identified by match to protein family HMM PF07681; hypothetical protein complement(767902..768375) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913992 YP_493396.1 CDS SAUSA300_0693 NC_007793.1 768717 769157 R hypothetical protein complement(768717..769157) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913163 YP_493397.1 CDS SAUSA300_0694 NC_007793.1 769437 770021 R hypothetical protein complement(769437..770021) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913301 YP_493398.1 CDS SAUSA300_0695 NC_007793.1 770120 770833 R identified by match to protein family HMM PF04055; radical activating enzyme family protein complement(770120..770833) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914639 YP_493399.1 CDS SAUSA300_0696 NC_007793.1 770837 771256 R identified by match to protein family HMM PF01242; 6-pyruvoyl tetrahydrobiopterin synthase-like protein complement(770837..771256) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914994 YP_493400.1 CDS SAUSA300_0697 NC_007793.1 771258 771926 R identified by match to protein family HMM PF06508; match to protein family HMM TIGR00364; exsB protein complement(771258..771926) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915085 YP_493401.1 CDS pabA NC_007793.1 772277 772870 D identified by match to protein family HMM PF00117; match to protein family HMM TIGR00566; para-aminobenzoate synthase, glutamine amidotransferase, component II 772277..772870 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914860 YP_493402.1 CDS SAUSA300_0699 NC_007793.1 772854 774005 D identified by match to protein family HMM PF00425; chorismate-binding domain-containing protein 772854..774005 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913213 YP_493403.1 CDS SAUSA300_0700 NC_007793.1 774005 774613 D hypothetical protein 774005..774613 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913880 YP_493404.1 CDS SAUSA300_0701 NC_007793.1 774973 775683 D identified by match to protein family HMM PF02682; hypothetical protein 774973..775683 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914730 YP_493405.1 CDS SAUSA300_0702 NC_007793.1 775667 776671 D identified by match to protein family HMM PF02626; hypothetical protein 775667..776671 Staphylococcus aureus subsp. aureus USA300_FPR3757 3912893 YP_493406.1 CDS SAUSA300_0703 NC_007793.1 777145 779085 D identified by match to protein family HMM PF00884; sulfatase family protein 777145..779085 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913858 YP_493407.1 CDS SAUSA300_0704 NC_007793.1 779356 781239 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 779356..781239 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913106 YP_493408.1 CDS recQ NC_007793.1 781251 783032 D identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF00570; match to protein family HMM TIGR00614; match to protein family HMM TIGR01389; ATP-dependent DNA helicase RecQ 781251..783032 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913127 YP_493409.1 CDS SAUSA300_0706 NC_007793.1 783254 784231 D identified by match to protein family HMM PF00005; putative osmoprotectant ABC transporter ATP-binding protein 783254..784231 Staphylococcus aureus subsp. aureus USA300_FPR3757 3915400 YP_493410.1 CDS SAUSA300_0707 NC_007793.1 784224 785738 D identified by match to protein family HMM PF00528; match to protein family HMM PF04069; osmoprotectant ABC transporter permease 784224..785738 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913999 YP_493411.1 CDS hisC NC_007793.1 785978 787036 D catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis; histidinol-phosphate aminotransferase 785978..787036 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913635 YP_493412.1 CDS SAUSA300_0709 NC_007793.1 787387 787929 D identified by match to protein family HMM PF06941; hypothetical protein 787387..787929 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913827 YP_493413.1 CDS SAUSA300_0710 NC_007793.1 788042 788140 D hypothetical protein 788042..788140 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914786 YP_493414.1 CDS SAUSA300_0711 NC_007793.1 788553 789470 R identified by match to protein family HMM PF00781; match to protein family HMM TIGR00147; hypothetical protein complement(788553..789470) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913541 YP_493415.1 CDS SAUSA300_0712 NC_007793.1 789740 791245 R identified by match to protein family HMM PF00854; match to protein family HMM PF07690; match to protein family HMM TIGR00924; amino acid/peptide transporter (peptide:H+ symporter) complement(789740..791245) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914236 YP_493416.1 CDS folE NC_007793.1 791586 792086 R NADPH-dependent; catalyzes the reduction of 7-cyano-7-deazaguanine to 7-aminomethyl-7-deazaguanine in queuosine biosynthesis; 7-cyano-7-deazaguanine reductase complement(791586..792086) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913277 YP_493417.1 CDS SAUSA300_0714 NC_007793.1 792106 792972 R identified by match to protein family HMM PF00892; integral membrane protein complement(792106..792972) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913363 YP_493418.1 CDS nrdI NC_007793.1 793773 794171 D in Salmonella NrdI has a stimulatory effect on the ribonucleotide reductase activity of NrdH with NrdEF; ribonucleotide reductase stimulatory protein 793773..794171 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913027 YP_493419.1 CDS SAUSA300_0716 NC_007793.1 794134 796239 D Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha 794134..796239 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913497 YP_493420.1 CDS nrdF NC_007793.1 796357 797328 D B2 or R2 protein; type 1b enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdE; ribonucleotide-diphosphate reductase subunit beta 796357..797328 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914251 YP_493421.1 CDS SAUSA300_0718 NC_007793.1 798036 799007 D identified by match to protein family HMM PF01032; iron compound ABC transporter permease 798036..799007 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914773 YP_493422.1 CDS SAUSA300_0719 NC_007793.1 798994 799950 D identified by match to protein family HMM PF01032; iron compound ABC transporter permease 798994..799950 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914417 YP_493423.1 CDS SAUSA300_0720 NC_007793.1 799947 800708 D identified by match to protein family HMM PF00005; putative iron compound ABC transporter ATP-binding protein 799947..800708 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913039 YP_493424.1 CDS SAUSA300_0721 NC_007793.1 800827 801855 D identified by match to protein family HMM PF01497; transferrin receptor 800827..801855 Staphylococcus aureus subsp. aureus USA300_FPR3757 3915038 YP_493425.1 CDS murB NC_007793.1 802504 803427 R catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis; UDP-N-acetylenolpyruvoylglucosamine reductase complement(802504..803427) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914411 YP_493426.1 CDS SAUSA300_0723 NC_007793.1 803554 804072 R identified by match to protein family HMM PF04229; hypothetical protein complement(803554..804072) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914628 YP_493427.1 CDS SAUSA300_0724 NC_007793.1 804192 805070 D hypothetical protein 804192..805070 Staphylococcus aureus subsp. aureus USA300_FPR3757 3912868 YP_493428.1 CDS SAUSA300_0725 NC_007793.1 805224 805544 D hypothetical protein 805224..805544 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913312 YP_493429.1 CDS SAUSA300_0726 NC_007793.1 805969 807093 D identified by match to protein family HMM PF02595; match to protein family HMM TIGR00045; glycerate kinase family protein 805969..807093 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913665 YP_493430.1 CDS pepT NC_007793.1 807282 808508 R catalyzes the release of the N-terminal amino acid from a tripeptide; peptidase T complement(807282..808508) Staphylococcus aureus subsp. aureus USA300_FPR3757 3912943 YP_493431.1 CDS SAUSA300_0728 NC_007793.1 808522 809016 R hypothetical protein complement(808522..809016) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914858 YP_493432.1 CDS SAUSA300_0729 NC_007793.1 809034 809795 R identified by match to protein family HMM PF06738; hypothetical protein complement(809034..809795) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913304 YP_493433.1 CDS SAUSA300_0730 NC_007793.1 809991 811061 R identified by match to protein family HMM PF00990; match to protein family HMM PF07694; match to protein family HMM TIGR00254; GGDEF domain-containing protein complement(809991..811061) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913001 YP_493434.1 CDS SAUSA300_0731 NC_007793.1 811379 812434 D identified by match to protein family HMM PF00953; glycosyl transferase, group 4 family protein 811379..812434 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914876 YP_493435.1 CDS SAUSA300_0732 NC_007793.1 812604 813245 R identified by match to protein family HMM PF01205; match to protein family HMM TIGR00257; hypothetical protein complement(812604..813245) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913193 YP_493436.1 CDS SAUSA300_0733 NC_007793.1 813389 814255 D identified by match to protein family HMM PF02645; match to protein family HMM TIGR00762; degV family protein 813389..814255 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913381 YP_493437.1 CDS SAUSA300_0734 NC_007793.1 814619 815701 D identified by match to protein family HMM PF00271; match to protein family HMM PF04851; putative comf operon protein 1 814619..815701 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913446 YP_493438.1 CDS SAUSA300_0735 NC_007793.1 815694 816368 D hypothetical protein 815694..816368 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914012 YP_493439.1 CDS yfiA NC_007793.1 816429 817001 D identified by match to protein family HMM PF02482; match to protein family HMM TIGR00741; ribosomal subunit interface protein 816429..817001 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913354 YP_493440.1 CDS secA NC_007793.1 817415 819946 D functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins; preprotein translocase subunit SecA 817415..819946 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914315 YP_493441.1 CDS SAUSA300_0739 NC_007793.1 821780 822619 D identified by match to protein family HMM PF01476; match to protein family HMM PF05257; LysM domain-containing protein 821780..822619 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913664 YP_493442.1 CDS SAUSA300_0740 NC_007793.1 822793 823443 D hypothetical protein 822793..823443 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913463 YP_493443.1 CDS uvrB NC_007793.1 823945 825930 D The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B 823945..825930 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913286 YP_493444.1 CDS uvrA NC_007793.1 825938 828784 D The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate; excinuclease ABC subunit A 825938..828784 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913512 YP_493445.1 CDS hprK NC_007793.1 829446 830378 D catalyzes the phosphorylation of the phosphocarrier protein HPr of the bacterial phosphotransferase system; HPr kinase/phosphorylase 829446..830378 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914551 YP_493446.1 CDS lgt NC_007793.1 830384 831223 D transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase 830384..831223 Staphylococcus aureus subsp. aureus USA300_FPR3757 3915245 YP_493447.1 CDS SAUSA300_0745 NC_007793.1 831231 831716 D identified by match to protein family HMM PF00132; putative acetyltransferase 831231..831716 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914466 YP_493448.1 CDS SAUSA300_0746 NC_007793.1 831724 833163 D identified by match to protein family HMM PF00515; match to protein family HMM PF07719; TPR domain-containing protein 831724..833163 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913729 YP_493449.1 CDS trxB NC_007793.1 833230 834165 D identified by match to protein family HMM PF00070; match to protein family HMM PF07992; match to protein family HMM TIGR01292; thioredoxin-disulfide reductase 833230..834165 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913567 YP_493450.1 CDS SAUSA300_0748 NC_007793.1 835045 835956 D identified by match to protein family HMM PF03668; hypothetical protein 835045..835956 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914919 YP_493451.1 CDS SAUSA300_0749 NC_007793.1 835953 836948 D identified by match to protein family HMM PF01933; match to protein family HMM TIGR01826; hypothetical protein 835953..836948 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913596 YP_493452.1 CDS SAUSA300_0750 NC_007793.1 837058 838002 D identified by match to protein family HMM PF02650; match to protein family HMM TIGR00647; hypothetical protein 837058..838002 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914069 YP_493453.1 CDS clpP NC_007793.1 838576 839163 D hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit 838576..839163 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914226 YP_493454.1 CDS SAUSA300_0753 NC_007793.1 839406 840308 R identified by match to protein family HMM PF01370; match to protein family HMM PF07993; match to protein family HMM TIGR01777; hypothetical protein complement(839406..840308) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915005 YP_493455.1 CDS SAUSA300_0754 NC_007793.1 841010 841639 D hypothetical protein 841010..841639 Staphylococcus aureus subsp. aureus USA300_FPR3757 3912844 YP_493456.1 CDS SAUSA300_0755 NC_007793.1 842281 843294 D identified by match to protein family HMM PF04198; glycolytic operon regulator 842281..843294 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913705 YP_493457.1 CDS gap NC_007793.1 843347 844357 D identified by match to protein family HMM PF00044; match to protein family HMM PF02800; match to protein family HMM TIGR01534; glyceraldehyde-3-phosphate dehydrogenase, type I 843347..844357 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914341 YP_493458.1 CDS pgk NC_007793.1 844496 845686 D Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase 844496..845686 Staphylococcus aureus subsp. aureus USA300_FPR3757 3912853 YP_493459.1 CDS tpiA NC_007793.1 845808 846569 D Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate; triosephosphate isomerase 845808..846569 Staphylococcus aureus subsp. aureus USA300_FPR3757 3915312 YP_493460.1 CDS gpmI NC_007793.1 846572 848089 D catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate; phosphoglyceromutase 846572..848089 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914669 YP_493461.1 CDS eno NC_007793.1 848219 849523 D enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase 848219..849523 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913373 YP_493462.1 CDS SAUSA300_0761 NC_007793.1 849863 850321 D hypothetical protein 849863..850321 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914617 YP_493463.2 CDS secG NC_007793.1 850388 850621 D identified by match to protein family HMM PF03840; match to protein family HMM TIGR00810; preprotein translocase subunit SecG 850388..850621 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914507 YP_493464.1 CDS est NC_007793.1 850737 851477 D carboxylesterase 850737..851477 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913000 YP_493465.1 CDS rnr NC_007793.1 851511 853883 D identified by match to protein family HMM PF00575; match to protein family HMM PF00773; match to protein family HMM PF08206; match to protein family HMM TIGR00358; match to protein family HMM TIGR02063; ribonuclease R 851511..853883 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913189 YP_493466.1 CDS smpB NC_007793.1 853905 854369 D binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein 853905..854369 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913883 YP_493467.1 CDS SAUSA300_0767 NC_007793.1 855691 856014 R hypothetical protein complement(855691..856014) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914933 YP_493468.1 CDS SAUSA300_0768 NC_007793.1 856030 856176 R hypothetical protein complement(856030..856176) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914189 YP_493469.1 CDS SAUSA300_0769 NC_007793.1 856368 857096 R hypothetical protein complement(856368..857096) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913796 YP_493470.1 CDS SAUSA300_0770 NC_007793.1 857695 858138 D hypothetical protein 857695..858138 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914925 YP_493471.1 CDS SAUSA300_0771 NC_007793.1 858355 858885 D identified by match to protein family HMM PF00583; acetyltransferase 858355..858885 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913694 YP_493472.1 CDS clfA NC_007793.1 859148 861949 D identified by match to protein family HMM PF00746; match to protein family HMM PF04650; match to protein family HMM TIGR01167; match to protein family HMM TIGR01168; clumping factor A 859148..861949 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913126 YP_493473.1 CDS SAUSA300_0773 NC_007793.1 862170 863696 D identified by similarity to SP:P07767; putative staphylocoagulase 862170..863696 Staphylococcus aureus subsp. aureus USA300_FPR3757 3915095 YP_493474.1 CDS empbp NC_007793.1 864047 865069 D secretory extracellular matrix and plasma binding protein 864047..865069 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914267 YP_493475.1 CDS SAUSA300_0775 NC_007793.1 865404 865874 D hypothetical protein 865404..865874 Staphylococcus aureus subsp. aureus USA300_FPR3757 3915244 YP_493476.1 CDS nuc NC_007793.1 866215 866901 D identified by match to protein family HMM PF00565; thermonuclease 866215..866901 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913811 YP_493477.1 CDS SAUSA300_0777 NC_007793.1 867258 867458 D identified by match to protein family HMM PF00313; cold shock protein 867258..867458 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914809 YP_493478.1 CDS SAUSA300_0778 NC_007793.1 867954 868172 R hypothetical protein complement(867954..868172) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914566 YP_493479.1 CDS SAUSA300_0779 NC_007793.1 868234 868518 R hypothetical protein complement(868234..868518) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914527 YP_493480.1 CDS SAUSA300_0780 NC_007793.1 868606 869175 R hypothetical protein complement(868606..869175) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913433 YP_493481.1 CDS SAUSA300_0782 NC_007793.1 870181 870384 D identified by match to protein family HMM PF06855; hypothetical protein 870181..870384 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913365 YP_493482.1 CDS SAUSA300_0781 NC_007793.1 870381 870617 R hypothetical protein complement(870381..870617) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914596 YP_493483.1 CDS SAUSA300_0783 NC_007793.1 870863 871423 D identified by match to protein family HMM PF00300; phosphoglycerate mutase family protein 870863..871423 Staphylococcus aureus subsp. aureus USA300_FPR3757 3912792 YP_493484.1 CDS SAUSA300_0784 NC_007793.1 871496 872113 R identified by match to protein family HMM PF01810; LysE/YggA family protein complement(871496..872113) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914496 YP_493485.1 CDS SAUSA300_0785 NC_007793.1 872268 872762 R acetyltransferase complement(872268..872762) Staphylococcus aureus subsp. aureus USA300_FPR3757 3912849 YP_493486.1 CDS SAUSA300_0786 NC_007793.1 873161 873583 R identified by match to protein family HMM PF02566; OsmC/Ohr family protein complement(873161..873583) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915313 YP_493487.1 CDS aroD NC_007793.1 873731 874447 D catalyzes the dehydration of 3-dehydroquinate to form 3-dehydroshikimate in aromatic amino acid biosynthesis; 3-dehydroquinate dehydratase 873731..874447 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913032 YP_493488.1 CDS SAUSA300_0788 NC_007793.1 874530 875069 D identified by match to protein family HMM PF00881; nitroreductase family protein 874530..875069 Staphylococcus aureus subsp. aureus USA300_FPR3757 3912976 YP_493489.1 CDS SAUSA300_0789 NC_007793.1 875219 875539 R identified by match to protein family HMM PF00085; putative thioredoxin complement(875219..875539) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914480 YP_493490.1 CDS SAUSA300_0790 NC_007793.1 875683 876039 D identified by match to protein family HMM PF03960; match to protein family HMM TIGR01617; hypothetical protein 875683..876039 Staphylococcus aureus subsp. aureus USA300_FPR3757 3915286 YP_493491.1 CDS gcvH NC_007793.1 876197 876577 D part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor; glycine cleavage system protein H 876197..876577 Staphylococcus aureus subsp. aureus USA300_FPR3757 3915310 YP_493492.1 CDS SAUSA300_0792 NC_007793.1 876641 876754 D hypothetical protein 876641..876754 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914360 YP_493493.1 CDS SAUSA300_0793 NC_007793.1 876756 877634 D hypothetical protein 876756..877634 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913333 YP_493494.1 CDS SAUSA300_0794 NC_007793.1 878376 878762 D identified by match to protein family HMM PF01751; TOPRIM domain-containing protein 878376..878762 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913450 YP_493495.1 CDS SAUSA300_0795 NC_007793.1 878755 879051 D hypothetical protein 878755..879051 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914482 YP_493496.1 CDS SAUSA300_0796 NC_007793.1 879301 880326 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 879301..880326 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914789 YP_493497.1 CDS SAUSA300_0797 NC_007793.1 880319 881014 D identified by match to protein family HMM PF00528; ABC transporter permease 880319..881014 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914604 YP_493498.1 CDS SAUSA300_0798 NC_007793.1 881032 881853 D identified by match to protein family HMM PF03180; ABC transporter substrate-binding protein 881032..881853 Staphylococcus aureus subsp. aureus USA300_FPR3757 3912903 YP_493499.1 CDS int NC_007793.1 881996 883216 R Staphylococcus aureus pathogenicity island; identified by match to protein family HMM PF00589; integrase complement(881996..883216) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913457 YP_493500.1 CDS sek NC_007793.1 883304 884032 R Staphylococcus aureus pathogenicity island; identified by match to protein family HMM PF01123; match to protein family HMM PF02876; enterotoxin K complement(883304..884032) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914034 YP_493501.1 CDS seq NC_007793.1 884056 884784 R Staphylococcus aureus pathogenicity island; identified by match to protein family HMM PF01123; match to protein family HMM PF02876; enterotoxin Q complement(884056..884784) Staphylococcus aureus subsp. aureus USA300_FPR3757 3912764 YP_493502.1 CDS SAUSA300_0802 NC_007793.1 884801 885259 R Staphylococcus aureus pathogenicity island; identified by match to protein family HMM PF06114; hypothetical protein complement(884801..885259) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915167 YP_493503.1 CDS SAUSA300_0803 NC_007793.1 885271 885603 R Staphylococcus aureus pathogenicity island; identified by match to protein family HMM PF00356; match to protein family HMM PF01381; Cro/CI family transcriptional regulator complement(885271..885603) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914898 YP_493504.1 CDS SAUSA300_0804 NC_007793.1 885817 886059 D identified by match to protein family HMM PF01381; putative transcriptional regulator 885817..886059 Staphylococcus aureus subsp. aureus USA300_FPR3757 3912845 YP_493505.1 CDS SAUSA300_0805 NC_007793.1 886052 886324 D Staphylococcus aureus pathogenicity island; pathogenicity island protein 886052..886324 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913383 YP_493506.1 CDS SAUSA300_0806 NC_007793.1 886476 886679 D Staphylococcus aureus pathogenicity island; hypothetical protein 886476..886679 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913427 YP_493507.1 CDS SAUSA300_0807 NC_007793.1 886681 887064 D Staphylococcus aureus pathogenicity island; identified by similarity to GB:AAG29614.1; hypothetical protein 886681..887064 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913158 YP_493508.1 CDS SAUSA300_0808 NC_007793.1 887065 887313 D Staphylococcus aureus pathogenicity island; identified by match to protein family HMM PF07342; hypothetical protein 887065..887313 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914841 YP_493509.1 CDS SAUSA300_0809 NC_007793.1 887405 889777 D Staphylococcus aureus pathogenicity island; identified by match to protein family HMM PF03288; match to protein family HMM TIGR01613; putative DNA primase 887405..889777 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913689 YP_493510.1 CDS SAUSA300_0810 NC_007793.1 890448 890792 D Staphylococcus aureus pathogenicity island; hypothetical protein 890448..890792 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913990 YP_493511.1 CDS SAUSA300_0811 NC_007793.1 891017 891223 D Staphylococcus aureus pathogenicity island; hypothetical protein 891017..891223 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914808 YP_493512.1 CDS SAUSA300_0812 NC_007793.1 891411 892268 D Staphylococcus aureus pathogenicity island; hypothetical protein 891411..892268 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914471 YP_493513.1 CDS SAUSA300_0813 NC_007793.1 892503 892943 D Staphylococcus aureus pathogenicity island; hypothetical protein 892503..892943 Staphylococcus aureus subsp. aureus USA300_FPR3757 3912980 YP_493514.1 CDS SAUSA300_0814 NC_007793.1 893372 894340 D Staphylococcus aureus pathogenicity island; identified by match to protein family HMM PF07751; hypothetical protein 893372..894340 Staphylococcus aureus subsp. aureus USA300_FPR3757 3915002 YP_493515.1 CDS ear NC_007793.1 894575 895129 R Staphylococcus aureus pathogenicity island; Ear protein complement(894575..895129) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914463 YP_493516.1 CDS SAUSA300_0816 NC_007793.1 896163 896357 D identified by match to protein family HMM PF05532; CsbD-like superfamily protein 896163..896357 Staphylococcus aureus subsp. aureus USA300_FPR3757 3915256 YP_493517.1 CDS SAUSA300_0817 NC_007793.1 896590 897441 R identified by match to protein family HMM PF04018; hypothetical protein complement(896590..897441) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913392 YP_493518.1 CDS sufC NC_007793.1 897769 898530 D identified by match to protein family HMM PF00005; match to protein family HMM TIGR01978; FeS assembly ATPase SufC 897769..898530 Staphylococcus aureus subsp. aureus USA300_FPR3757 3912971 YP_493519.1 CDS sufD NC_007793.1 898628 899935 D identified by match to protein family HMM PF01458; match to protein family HMM TIGR01981; FeS assembly protein SufD 898628..899935 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914719 YP_493520.1 CDS sufS NC_007793.1 900050 901291 D identified by match to protein family HMM PF00266; match to protein family HMM PF01212; match to protein family HMM TIGR01979; SufS subfamily cysteine desulfurase 900050..901291 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913968 YP_493521.1 CDS SAUSA300_0821 NC_007793.1 901281 901745 D identified by match to protein family HMM PF01592; match to protein family HMM TIGR01994; NifU family SUF system FeS assembly protein 901281..901745 Staphylococcus aureus subsp. aureus USA300_FPR3757 3915259 YP_493522.1 CDS sufB NC_007793.1 901896 903293 D identified by match to protein family HMM PF01458; match to protein family HMM TIGR01980; FeS assembly protein SufB 901896..903293 Staphylococcus aureus subsp. aureus USA300_FPR3757 3912810 YP_493523.1 CDS SAUSA300_0823 NC_007793.1 903623 903937 R hypothetical protein complement(903623..903937) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913783 YP_493524.1 CDS SAUSA300_0824 NC_007793.1 904302 905342 D identified by match to protein family HMM PF00571; match to protein family HMM PF01595; hypothetical protein 904302..905342 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914052 YP_493525.1 CDS SAUSA300_0825 NC_007793.1 905356 906423 D identified by match to protein family HMM PF01180; match to protein family HMM PF03060; 2-nitropropane dioxygenase family oxidoreductase 905356..906423 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914035 YP_493526.1 CDS SAUSA300_0826 NC_007793.1 906636 907484 D identified by match to protein family HMM PF01904; hypothetical protein 906636..907484 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913280 YP_493527.1 CDS SAUSA300_0827 NC_007793.1 907497 908324 D identified by match to protein family HMM PF01925; hypothetical protein 907497..908324 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914830 YP_493528.1 CDS SAUSA300_0828 NC_007793.1 908351 909670 D identified by match to protein family HMM PF00149; 5'-nucleotidase family protein 908351..909670 Staphylococcus aureus subsp. aureus USA300_FPR3757 3915322 YP_493529.1 CDS lipA NC_007793.1 909754 910671 D catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group; lipoyl synthase 909754..910671 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914679 YP_493530.1 CDS SAUSA300_0830 NC_007793.1 910801 911184 D identified by match to protein family HMM PF06265; hypothetical protein 910801..911184 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914125 YP_493531.1 CDS SAUSA300_0831 NC_007793.1 911263 911529 R hypothetical protein complement(911263..911529) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913402 YP_493532.1 CDS SAUSA300_0832 NC_007793.1 911627 912061 D identified by match to protein family HMM PF01934; hypothetical protein 911627..912061 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913833 YP_493533.1 CDS SAUSA300_0833 NC_007793.1 912061 912840 D identified by match to protein family HMM PF00702; match to protein family HMM TIGR01457; match to protein family HMM TIGR01460; hypothetical protein 912061..912840 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913243 YP_493534.1 CDS SAUSA300_0834 NC_007793.1 912873 913832 D identified by match to protein family HMM PF00389; match to protein family HMM PF02826; D-isomer specific 2-hydroxyacid dehydrogenase 912873..913832 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914859 YP_493535.1 CDS dltA NC_007793.1 914412 915869 D transfers D-alanine to the D-alanyl carrier protein during the incorporation of D-alanine into lipoteichoic acid; D-alanine--poly(phosphoribitol) ligase subunit 1 914412..915869 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913697 YP_493536.1 CDS dltB NC_007793.1 915866 917080 D identified by match to protein family HMM PF03062; dltB protein 915866..917080 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913546 YP_493537.1 CDS dltC NC_007793.1 917098 917334 D D-alanyl carrier protein subunit; involved in the incorporation of D-alanine into membrane-associated D-alanyl-lipoteichoic acid; D-alanyl carrier protein is the acceptor of activated D-alanine which it donates to a membrane acceptor(D-alanyl transferase) for incorporation into membrane lipoteichoic acid; D-alanine--poly(phosphoribitol) ligase subunit 2 917098..917334 Staphylococcus aureus subsp. aureus USA300_FPR3757 3912974 YP_493538.1 CDS dltD NC_007793.1 917331 918506 D identified by match to protein family HMM PF04914; match to protein family HMM PF04915; match to protein family HMM PF04918; D-alanine-activating enzyme/D-alanine-D-alanyl, dltD protein 917331..918506 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914191 YP_493539.1 CDS SAUSA300_0839 NC_007793.1 918769 919011 R identified by match to protein family HMM PF01106; hypothetical protein complement(918769..919011) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913837 YP_493540.1 CDS SAUSA300_0840 NC_007793.1 919112 919435 D identified by match to protein family HMM PF07315; hypothetical protein 919112..919435 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913337 YP_493541.1 CDS SAUSA300_0841 NC_007793.1 919494 920558 R identified by match to protein family HMM PF00070; match to protein family HMM PF07992; hypothetical protein complement(919494..920558) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914694 YP_493542.1 CDS SAUSA300_0842 NC_007793.1 920875 921111 D identified by match to protein family HMM PF07293; hypothetical protein 920875..921111 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913024 YP_493543.1 CDS SAUSA300_0843 NC_007793.1 921124 921483 D identified by match to protein family HMM PF01521; match to protein family HMM TIGR00049; hypothetical protein 921124..921483 Staphylococcus aureus subsp. aureus USA300_FPR3757 3915074 YP_493544.1 CDS SAUSA300_0844 NC_007793.1 921937 923145 D identified by match to protein family HMM PF00070; match to protein family HMM PF07992; hypothetical protein 921937..923145 Staphylococcus aureus subsp. aureus USA300_FPR3757 3912834 YP_493545.1 CDS ampA NC_007793.1 923276 924751 D identified by match to protein family HMM PF00883; match to protein family HMM PF02789; cytosol aminopeptidase 923276..924751 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913129 YP_493546.1 CDS SAUSA300_0846 NC_007793.1 925162 926478 D authenticated frameshift; Na+/H+ antiporter family protein 925162..926478 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913960 YP_493547.1 CDS SAUSA300_0847 NC_007793.1 926497 926871 D identified by match to protein family HMM PF03061; match to protein family HMM TIGR00369; hypothetical protein 926497..926871 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914807 YP_493548.1 CDS SAUSA300_0848 NC_007793.1 926927 928081 R hypothetical protein complement(926927..928081) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915037 YP_493549.1 CDS mnhG NC_007793.1 928330 928686 R subunit G of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; putative monovalent cation/H+ antiporter subunit G complement(928330..928686) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913156 YP_493550.1 CDS mnhF NC_007793.1 928664 928957 R subunit F of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; putative monovalent cation/H+ antiporter subunit F complement(928664..928957) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913003 YP_493551.1 CDS mnhE NC_007793.1 928957 929436 R subunit E of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; putative monovalent cation/H+ antiporter subunit E complement(928957..929436) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914731 YP_493552.1 CDS mnhD NC_007793.1 929438 930934 R subunit D of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; contains an oxidoreductase domain; catalyzes the transfer of electrons from NADH to ubiquinone; putative monovalent cation/H+ antiporter subunit D complement(929438..930934) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913746 YP_493553.1 CDS mnhC NC_007793.1 930927 931256 R subunit C of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; putative monovalent cation/H+ antiporter subunit C complement(930927..931256) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914505 YP_493554.1 CDS mnhB NC_007793.1 931268 931696 R subunit B of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in the case of S. meliloti it was proved to be involved specifically with K+ transport; putative monovalent cation/H+ antiporter subunit B complement(931268..931696) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915161 YP_493555.1 CDS mnhA NC_007793.1 931689 934094 R subunit A of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; monovalent cation/H+ antiporter subunit A complement(931689..934094) Staphylococcus aureus subsp. aureus USA300_FPR3757 3912875 YP_493556.1 CDS SAUSA300_0856 NC_007793.1 934225 934608 R hypothetical protein complement(934225..934608) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913832 YP_493557.1 CDS SAUSA300_0857 NC_007793.1 934672 935265 D identified by match to protein family HMM PF00160; hypothetical protein 934672..935265 Staphylococcus aureus subsp. aureus USA300_FPR3757 3915127 YP_493558.1 CDS SAUSA300_0858 NC_007793.1 935714 936058 D identified by match to protein family HMM PF00575; hypothetical protein 935714..936058 Staphylococcus aureus subsp. aureus USA300_FPR3757 3915087 YP_493559.1 CDS SAUSA300_0859 NC_007793.1 936420 937547 D identified by match to protein family HMM PF00724; NADH-dependent flavin oxidoreductase 936420..937547 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914298 YP_493560.1 CDS rocD NC_007793.1 937855 939045 D identified by match to protein family HMM PF00202; match to protein family HMM TIGR01885; ornithine--oxo-acid transaminase 937855..939045 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914323 YP_493561.1 CDS gudB NC_007793.1 939154 940398 D identified by match to protein family HMM PF00208; match to protein family HMM PF02812; NAD-specific glutamate dehydrogenase 939154..940398 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914066 YP_493562.1 CDS glpQ NC_007793.1 940901 941830 R identified by match to protein family HMM PF03009; glycerophosphoryl diester phosphodiesterase complement(940901..941830) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915150 YP_493563.1 CDS argH NC_007793.1 942072 943451 R catalyzes the formation of arginine from (N-L-arginino)succinate; argininosuccinate lyase complement(942072..943451) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915407 YP_493564.1 CDS argG NC_007793.1 943441 944646 R catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming; argininosuccinate synthase complement(943441..944646) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914027 YP_493565.1 CDS pgi NC_007793.1 944997 946328 D functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family; glucose-6-phosphate isomerase 944997..946328 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914716 YP_493566.1 CDS SAUSA300_0866 NC_007793.1 946653 947228 D hypothetical protein 946653..947228 Staphylococcus aureus subsp. aureus USA300_FPR3757 3912808 YP_493567.1 CDS spsA NC_007793.1 947233 947757 D identified by match to protein family HMM PF00717; match to protein family HMM TIGR02227; signal peptidase IA 947233..947757 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914348 YP_493568.1 CDS spsB NC_007793.1 947881 948348 D identified by match to protein family HMM PF00717; match to protein family HMM TIGR02227; signal peptidase IB 947881..948348 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913370 YP_493569.1 CDS rexB NC_007793.1 948508 951984 D identified by match to protein family HMM TIGR02773; exonuclease RexB 948508..951984 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914594 YP_493570.1 CDS rexA NC_007793.1 951985 955638 D identified by match to protein family HMM PF00580; match to protein family HMM TIGR02785; exonuclease RexA 951985..955638 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914895 YP_493571.1 CDS SAUSA300_0871 NC_007793.1 955804 956706 D identified by match to protein family HMM PF01557; hypothetical protein 955804..956706 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914112 YP_493572.1 CDS SAUSA300_0872 NC_007793.1 957035 957424 D identified by match to protein family HMM PF07457; hypothetical protein 957035..957424 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913474 YP_493573.1 CDS cdr NC_007793.1 957595 958911 R NADPH-dependent; catalyzes the reduction of coenzyme A disulfide; coenzyme A disulfide reductase complement(957595..958911) Staphylococcus aureus subsp. aureus USA300_FPR3757 3912763 YP_493574.1 CDS SAUSA300_0874 NC_007793.1 958963 959787 R identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484; hypothetical protein complement(958963..959787) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913533 YP_493575.1 CDS SAUSA300_0875 NC_007793.1 959943 960209 D identified by match to protein family HMM PF01883; hypothetical protein 959943..960209 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914652 YP_493576.1 CDS SAUSA300_0876 NC_007793.1 960756 962570 D identified by match to protein family HMM PF01757; hypothetical protein 960756..962570 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913505 YP_493577.1 CDS clpB NC_007793.1 962773 965382 D identified by match to protein family HMM PF00004; match to protein family HMM PF02861; match to protein family HMM PF07724; match to protein family HMM PF07728; chaperone clpB 962773..965382 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913305 YP_493578.1 CDS SAUSA300_0878 NC_007793.1 965441 966310 R identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator complement(965441..966310) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913400 YP_493579.1 CDS SAUSA300_0879 NC_007793.1 966420 967565 D identified by match to protein family HMM PF00682; isopropylmalate synthase-like protein 966420..967565 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914531 YP_493580.1 CDS SAUSA300_0880 NC_007793.1 967549 968190 D identified by match to protein family HMM PF01300; hypothetical protein 967549..968190 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913932 YP_493581.1 CDS SAUSA300_0881 NC_007793.1 968183 969301 D hypothetical protein 968183..969301 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913055 YP_493582.1 CDS SAUSA300_0882 NC_007793.1 969285 969800 D identified by match to protein family HMM TIGR00481; hypothetical protein 969285..969800 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914842 YP_493583.1 CDS SAUSA300_0883 NC_007793.1 970111 970545 D identified by match to protein family HMM PF03642; putative surface protein 970111..970545 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914378 YP_493584.1 CDS SAUSA300_0884 NC_007793.1 970802 970987 R hypothetical protein complement(970802..970987) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915062 YP_493585.1 CDS fabH NC_007793.1 971282 972223 D FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-(acyl carrier protein) synthase III 971282..972223 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913302 YP_493586.1 CDS fabF NC_007793.1 972235 973479 D identified by match to protein family HMM PF00109; match to protein family HMM PF02801; 3-oxoacyl-(acyl-carrier-protein) synthase II 972235..973479 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914046 YP_493587.1 CDS oppB NC_007793.1 974149 975075 D identified by match to protein family HMM PF00528; oligopeptide ABC transporter permease 974149..975075 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914794 YP_493588.1 CDS oppC NC_007793.1 975075 976145 D identified by match to protein family HMM PF00528; oligopeptide ABC transporter permease 975075..976145 Staphylococcus aureus subsp. aureus USA300_FPR3757 3915121 YP_493589.1 CDS oppD NC_007793.1 976162 977244 D identified by match to protein family HMM PF00005; match to protein family HMM TIGR01727; oligopeptide ABC transporter ATP-binding protein 976162..977244 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914207 YP_493590.1 CDS oppF NC_007793.1 977234 978175 D identified by match to protein family HMM PF00005; oligopeptide ABC transporter ATP-binding protein 977234..978175 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914374 YP_493591.1 CDS oppA NC_007793.1 978194 979849 D identified by match to protein family HMM PF00496; oligopeptide ABC transporter substrate-binding protein 978194..979849 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914687 YP_493592.1 CDS oppA NC_007793.1 980061 981776 D identified by match to protein family HMM PF00496; oligopeptide ABC transporter oligopeptide-binding protein 980061..981776 Staphylococcus aureus subsp. aureus USA300_FPR3757 3912851 YP_493593.1 CDS oppF NC_007793.1 981827 982813 D identified by match to protein family HMM PF00005; match to protein family HMM TIGR01727; oligopeptide ABC transporter ATP-binding protein 981827..982813 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913573 YP_493594.1 CDS oppD NC_007793.1 982816 983796 D identified by match to protein family HMM PF00005; match to protein family HMM TIGR01727; oligopeptide ABC transporter ATP-binding protein 982816..983796 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913946 YP_493595.1 CDS oppB NC_007793.1 983789 984751 D identified by match to protein family HMM PF00528; oligopeptide ABC transporter permease 983789..984751 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913893 YP_493596.1 CDS oppC NC_007793.1 984763 985644 D identified by match to protein family HMM PF00528; oligopeptide ABC transporter permease 984763..985644 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914976 YP_493597.1 CDS trpS NC_007793.1 985686 986675 R catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase complement(985686..986675) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913281 YP_493598.1 CDS spxA NC_007793.1 986970 987365 D the anti-alpha factor Spx interacts with RNA polymerase alpha subunit C-terminal domain in a region that interacts with the sigma 70 subunit and may interfere with activation of promoters; in Bacillus subtilis this protein is a substrate for ClpXP protease; blocks transcription of the competence regulatory gene encoded by the srf operon; regulates a number of genes involved in thiol homeostasis including trxA and trxB; monomeric member of ArsC family of proteins; does not bind DNA; contains a disulfide bond between C10 and C13 which may sense disulfide stress; transcriptional regulator Spx 986970..987365 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913388 YP_493599.1 CDS SAUSA300_0899 NC_007793.1 987736 988455 D enables recognition and targeting of proteins for proteolysis, involved in negative regulation of competence; adaptor protein 987736..988455 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914750 YP_493600.1 CDS SAUSA300_0900 NC_007793.1 988576 988833 D authenticated frameshift; putative competence protein 988576..988833 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914538 YP_493601.1 CDS SAUSA300_0901 NC_007793.1 988860 989561 D authenticated frameshift; identified by match to protein family HMM PF06054; putative competence protein 988860..989561 Staphylococcus aureus subsp. aureus USA300_FPR3757 3915047 YP_493602.1 CDS pepF NC_007793.1 989609 991417 D identified by match to protein family HMM PF01432; match to protein family HMM TIGR00181; oligoendopeptidase F 989609..991417 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914117 YP_493603.1 CDS SAUSA300_0903 NC_007793.1 991877 992683 R hypothetical protein complement(991877..992683) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913854 YP_493604.1 CDS SAUSA300_0904 NC_007793.1 992706 993071 R identified by match to protein family HMM PF01152; hypothetical protein complement(992706..993071) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913714 YP_493605.1 CDS SAUSA300_0905 NC_007793.1 993175 993768 R identified by match to protein family HMM PF01928; hypothetical protein complement(993175..993768) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913947 YP_493606.1 CDS SAUSA300_0906 NC_007793.1 993954 994301 D hypothetical protein 993954..994301 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914644 YP_493607.1 CDS SAUSA300_0907 NC_007793.1 994318 994953 D identified by match to protein family HMM PF04607; GTP pyrophosphokinase 994318..994953 Staphylococcus aureus subsp. aureus USA300_FPR3757 3912765 YP_493608.1 CDS ppnK NC_007793.1 994970 995779 D catalyzes the phosphorylation of NAD to NADP; inorganic polyphosphate/ATP-NAD kinase 994970..995779 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914724 YP_493609.1 CDS SAUSA300_0909 NC_007793.1 995776 996630 D identified by match to protein family HMM PF00849; match to protein family HMM TIGR00005; RluA family pseudouridine synthase 995776..996630 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914049 YP_493610.1 CDS mgtE NC_007793.1 996651 998036 D identified by match to protein family HMM PF00571; match to protein family HMM PF01769; match to protein family HMM PF03448; match to protein family HMM TIGR00400; magnesium transporter 996651..998036 Staphylococcus aureus subsp. aureus USA300_FPR3757 3912936 YP_493611.1 CDS SAUSA300_0911 NC_007793.1 998046 999890 D identified by match to protein family HMM PF00999; match to protein family HMM PF02080; match to protein family HMM PF02254; transporter, monovalent cation:proton antiporter-2 (CPA2) family protein 998046..999890 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914182 YP_493612.1 CDS SAUSA300_0912 NC_007793.1 1000168 1000938 D Catalyzes a key regulatory step in fatty acid biosynthesis; enoyl-(acyl carrier protein) reductase 1000168..1000938 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914075 YP_493613.1 CDS SAUSA300_0913 NC_007793.1 1001133 1002218 R identified by match to protein family HMM PF01594; hypothetical protein complement(1001133..1002218) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915174 YP_493614.1 CDS SAUSA300_0914 NC_007793.1 1002560 1004128 D identified by match to protein family HMM PF00324; match to protein family HMM PF01235; match to protein family HMM TIGR00835; sodium:alanine symporter family protein 1002560..1004128 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914872 YP_493615.1 CDS SAUSA300_0915 NC_007793.1 1004270 1005028 D identified by match to protein family HMM PF00756; hypothetical protein 1004270..1005028 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913660 YP_493616.1 CDS SAUSA300_0916 NC_007793.1 1005222 1005731 D similar to 2'-5' RNA ligase; hypothetical protein 1005222..1005731 Staphylococcus aureus subsp. aureus USA300_FPR3757 3912883 YP_493617.1 CDS SAUSA300_0917 NC_007793.1 1005844 1007052 R identified by match to protein family HMM PF07690; hypothetical protein complement(1005844..1007052) Staphylococcus aureus subsp. aureus USA300_FPR3757 3912948 YP_493618.1 CDS SAUSA300_0918 NC_007793.1 1007012 1008187 R processive; catalyzes the formation of mono-, di- and tri-glucosyldiacylglycerol by the progressive transfer of glucosyl residues to diacylglycerol; involved in the formation of membrane glycolipids; diacylglycerol glucosyltransferase complement(1007012..1008187) Staphylococcus aureus subsp. aureus USA300_FPR3757 3912877 YP_493619.1 CDS murE NC_007793.1 1008620 1010101 D involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of lysine to UDP-N-acetylmuramoyl-L-alanyl-D-glutamate forming UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-L-lysine; UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase 1008620..1010101 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914710 YP_493620.1 CDS SAUSA300_0920 NC_007793.1 1010094 1010345 D hypothetical protein 1010094..1010345 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913282 YP_493621.1 CDS prfC NC_007793.1 1010345 1011907 D stimulates the release of release factors 1 and 2 from the ribosome after hydrolysis of the ester bond in peptidyl-tRNA has occurred; GDP/GTP-binding protein; peptide chain release factor 3 1010345..1011907 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914032 YP_493622.1 CDS SAUSA300_0922 NC_007793.1 1012209 1013012 D identified by match to protein family HMM PF03741; TerC family membrane protein 1012209..1013012 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914845 YP_493623.1 CDS htrA NC_007793.1 1013246 1015555 D identified by match to protein family HMM PF00089; serine protease 1013246..1015555 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914987 YP_493624.1 CDS SAUSA300_0924 NC_007793.1 1015572 1016930 D identified by match to protein family HMM PF02386; sodium transport family protein 1015572..1016930 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913270 YP_493625.1 CDS SAUSA300_0925 NC_007793.1 1017069 1018580 D identified by match to protein family HMM PF02872; 5' nucleotidase family protein 1017069..1018580 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914455 YP_493626.1 CDS comK NC_007793.1 1019067 1019597 R identified by match to protein family HMM PF06338; competence transcription factor complement(1019067..1019597) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913923 YP_493627.1 CDS SAUSA300_0929 NC_007793.1 1019846 1020064 D hypothetical protein 1019846..1020064 Staphylococcus aureus subsp. aureus USA300_FPR3757 3915262 YP_493628.1 CDS SAUSA300_0930 NC_007793.1 1020145 1021131 R identified by match to protein family HMM PF03099; match to protein family HMM TIGR00545; lipoate-protein ligase A family protein complement(1020145..1021131) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915077 YP_493629.1 CDS SAUSA300_0931 NC_007793.1 1021330 1021506 D hypothetical protein 1021330..1021506 Staphylococcus aureus subsp. aureus USA300_FPR3757 3912796 YP_493630.1 CDS SAUSA300_0932 NC_007793.1 1021521 1022123 D identified by match to protein family HMM PF02517; hypothetical protein 1021521..1022123 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913616 YP_493631.1 CDS SAUSA300_0933 NC_007793.1 1022394 1022501 D hypothetical protein 1022394..1022501 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913899 YP_493632.1 CDS SAUSA300_0934 NC_007793.1 1023467 1025431 D identified by match to protein family HMM TIGR01654; membrane protein 1023467..1025431 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914146 YP_493633.1 CDS SAUSA300_0935 NC_007793.1 1025434 1025754 D identified by match to protein family HMM TIGR01655; hypothetical protein 1025434..1025754 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914370 YP_493634.1 CDS SAUSA300_0936 NC_007793.1 1025751 1026392 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 1025751..1026392 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913759 YP_493635.1 CDS SAUSA300_0937 NC_007793.1 1026480 1026770 R hypothetical protein complement(1026480..1026770) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915255 YP_493636.1 CDS SAUSA300_0938 NC_007793.1 1027049 1027336 D hypothetical protein 1027049..1027336 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914598 YP_493637.1 CDS SAUSA300_0939 NC_007793.1 1027342 1028823 D identified by match to protein family HMM PF00534; glycosyl transferase, group 1 family protein 1027342..1028823 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913548 YP_493638.1 CDS SAUSA300_0940 NC_007793.1 1028912 1029268 R identified by match to protein family HMM PF07681; hypothetical protein complement(1028912..1029268) Staphylococcus aureus subsp. aureus USA300_FPR3757 3912916 YP_493639.1 CDS SAUSA300_0941 NC_007793.1 1029841 1030704 D identified by match to protein family HMM PF01497; putative ferrichrome ABC transporter 1029841..1030704 Staphylococcus aureus subsp. aureus USA300_FPR3757 3915324 YP_493640.1 CDS SAUSA300_0942 NC_007793.1 1030945 1031235 R identified by match to protein family HMM PF05154; hypothetical protein complement(1030945..1031235) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914755 YP_493641.1 CDS SAUSA300_0943 NC_007793.1 1031379 1031876 D identified by match to protein family HMM PF00583; acetyltransferase 1031379..1031876 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914627 YP_493642.1 CDS menA NC_007793.1 1031928 1032866 R catalyzes the formation of dimethylmenaquinone from 1,4-dihydroxy-2-naphthoate and octaprenyl diphosphate; 1,4-dihydroxy-2-naphthoate octaprenyltransferase complement(1031928..1032866) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913662 YP_493643.1 CDS SAUSA300_0945 NC_007793.1 1033198 1034409 D identified by match to protein family HMM PF00425; match to protein family HMM TIGR00543; isochorismate synthase family protein 1033198..1034409 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914450 YP_493644.1 CDS menD NC_007793.1 1034396 1036069 D identified by match to protein family HMM PF02776; match to protein family HMM TIGR00173; 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylic acid synthase/2-oxoglutarate decarboxylase 1034396..1036069 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913540 YP_493645.1 CDS SAUSA300_0947 NC_007793.1 1036056 1036859 D identified by match to protein family HMM PF00561; alpha/beta fold family hydrolase 1036056..1036859 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913049 YP_493646.1 CDS menB NC_007793.1 1036852 1037673 D catalyzes the formation of 1,4-dihydroxy-2-naphthoate from O-succinylbenzoyl-CoA; naphthoate synthase 1036852..1037673 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914123 YP_493647.1 CDS sspC NC_007793.1 1037912 1038241 R cysteine protease complement(1037912..1038241) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913678 YP_493648.1 CDS sspB NC_007793.1 1038279 1039460 R cysteine protease complement(1038279..1039460) Staphylococcus aureus subsp. aureus USA300_FPR3757 3912857 YP_493649.1 CDS sspA NC_007793.1 1039542 1040552 R identified by match to protein family HMM PF00089; V8 protease complement(1039542..1040552) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913747 YP_493650.1 CDS SAUSA300_0952 NC_007793.1 1041080 1042234 R identified by match to protein family HMM PF00155; aminotransferase, class I complement(1041080..1042234) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915212 YP_493651.1 CDS SAUSA300_0953 NC_007793.1 1042430 1043440 R identified by match to protein family HMM PF01757; hypothetical protein complement(1042430..1043440) Staphylococcus aureus subsp. aureus USA300_FPR3757 3912921 YP_493652.1 CDS SAUSA300_0954 NC_007793.1 1043593 1044012 D identified by match to protein family HMM PF01047; MarR family transcriptional regulator 1043593..1044012 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913462 YP_493653.1 CDS atl NC_007793.1 1044219 1047989 R identified by match to protein family HMM PF01510; match to protein family HMM PF01832; autolysin complement(1044219..1047989) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914283 YP_493654.1 CDS SAUSA300_0956 NC_007793.1 1048217 1048651 R identified by match to protein family HMM PF00583; hypothetical protein complement(1048217..1048651) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914063 YP_493655.1 CDS SAUSA300_0957 NC_007793.1 1048806 1049276 R hypothetical protein complement(1048806..1049276) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915010 YP_493656.1 CDS SAUSA300_0958 NC_007793.1 1049324 1050541 R identified by match to protein family HMM PF03816; match to protein family HMM TIGR00350; hypothetical protein complement(1049324..1050541) Staphylococcus aureus subsp. aureus USA300_FPR3757 3912981 YP_493657.1 CDS fmt NC_007793.1 1050992 1052185 D identified by match to protein family HMM PF00144; fmt protein 1050992..1052185 Staphylococcus aureus subsp. aureus USA300_FPR3757 3912830 YP_493658.1 CDS qoxD NC_007793.1 1052722 1053000 R identified by match to protein family HMM PF03626; quinol oxidase, subunit IV complement(1052722..1053000) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914704 YP_493659.1 CDS qoxC NC_007793.1 1053009 1053614 R identified by match to protein family HMM PF00510; quinol oxidase, subunit III complement(1053009..1053614) Staphylococcus aureus subsp. aureus USA300_FPR3757 3912886 YP_493660.1 CDS qoxB NC_007793.1 1053604 1055592 R identified by match to protein family HMM PF00115; quinol oxidase, subunit I complement(1053604..1055592) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915248 YP_493661.1 CDS qoxA NC_007793.1 1055592 1056692 R identified by match to protein family HMM PF00116; match to protein family HMM PF02790; match to protein family HMM PF06481; match to protein family HMM TIGR01432; quinol oxidase, subunit II complement(1055592..1056692) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914886 YP_493662.1 CDS SAUSA300_0964 NC_007793.1 1057264 1057581 R hypothetical protein complement(1057264..1057581) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913124 YP_493663.1 CDS folD NC_007793.1 1058386 1059246 R catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase complement(1058386..1059246) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915185 YP_493664.1 CDS purE NC_007793.1 1059510 1059929 D identified by match to protein family HMM PF00731; match to protein family HMM TIGR01162; phosphoribosylaminoimidazole carboxylase, catalytic subunit 1059510..1059929 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913603 YP_493665.1 CDS purK NC_007793.1 1059916 1061040 D With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway; phosphoribosylaminoimidazole carboxylase ATPase subunit 1059916..1061040 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913240 YP_493666.1 CDS purC NC_007793.1 1061044 1061748 D catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; phosphoribosylaminoimidazole-succinocarboxamide synthase 1061044..1061748 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913352 YP_493667.1 CDS purS NC_007793.1 1061748 1062011 D identified by match to protein family HMM PF02700; match to protein family HMM TIGR00302; phosphoribosylformylglycinamidine synthase 1061748..1062011 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914379 YP_493668.1 CDS purQ NC_007793.1 1062013 1062684 D catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase I 1062013..1062684 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914501 YP_493669.1 CDS purL NC_007793.1 1062677 1064866 D catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase II 1062677..1064866 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913168 YP_493670.1 CDS purF NC_007793.1 1064845 1066329 D Catalyzes first step of the de novo purine nucleotide biosynthetic pathway; amidophosphoribosyltransferase 1064845..1066329 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914297 YP_493671.1 CDS purM NC_007793.1 1066322 1067350 D catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis; phosphoribosylaminoimidazole synthetase 1066322..1067350 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914947 YP_493672.1 CDS purN NC_007793.1 1067353 1067919 D identified by match to protein family HMM PF00551; match to protein family HMM TIGR00639; phosphoribosylglycinamide formyltransferase 1067353..1067919 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913005 YP_493673.1 CDS purH NC_007793.1 1067934 1069412 D involved in de novo purine biosynthesis; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 1067934..1069412 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914768 YP_493674.1 CDS purD NC_007793.1 1069434 1070681 D catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis; phosphoribosylamine--glycine ligase 1069434..1070681 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913744 YP_493675.1 CDS SAUSA300_0977 NC_007793.1 1070946 1071752 R identified by match to protein family HMM PF02361; cobalt transport family protein complement(1070946..1071752) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915197 YP_493676.1 CDS SAUSA300_0978 NC_007793.1 1071745 1073145 R identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein complement(1071745..1073145) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914695 YP_493677.1 CDS SAUSA300_0979 NC_007793.1 1073160 1073735 R hypothetical protein complement(1073160..1073735) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914428 YP_493678.1 CDS SAUSA300_0980 NC_007793.1 1074605 1075900 D hypothetical protein 1074605..1075900 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913891 YP_493679.1 CDS SAUSA300_0981 NC_007793.1 1076325 1077497 D hypothetical protein 1076325..1077497 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914940 YP_493680.1 CDS SAUSA300_0982 NC_007793.1 1077551 1078093 D hypothetical protein 1077551..1078093 Staphylococcus aureus subsp. aureus USA300_FPR3757 3915124 YP_493681.1 CDS ptsH NC_007793.1 1078247 1078513 D identified by match to protein family HMM PF00381; match to protein family HMM TIGR01003; phosphocarrier protein HPr 1078247..1078513 Staphylococcus aureus subsp. aureus USA300_FPR3757 3915360 YP_493682.1 CDS ptsI NC_007793.1 1078516 1080234 D identified by match to protein family HMM PF00391; match to protein family HMM PF02896; match to protein family HMM PF05524; match to protein family HMM TIGR01417; phosphoenolpyruvate-protein phosphotransferase 1078516..1080234 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913583 YP_493683.1 CDS SAUSA300_0985 NC_007793.1 1080471 1080704 R identified by match to protein family HMM PF00462; hypothetical protein complement(1080471..1080704) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913674 YP_493684.1 CDS SAUSA300_0986 NC_007793.1 1080902 1082263 D identified by match to protein family HMM PF01654; cytochrome D ubiquinol oxidase, subunit I 1080902..1082263 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913976 YP_493685.1 CDS SAUSA300_0987 NC_007793.1 1082260 1083279 D cytochrome D ubiquinol oxidase, subunit II 1082260..1083279 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913915 YP_493686.1 CDS trkA NC_007793.1 1083412 1084074 D identified by match to protein family HMM PF02080; match to protein family HMM PF02254; potassium uptake protein 1083412..1084074 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914883 YP_493687.1 CDS SAUSA300_0989 NC_007793.1 1084423 1086120 R identified by match to protein family HMM PF00753; match to protein family HMM PF07521; match to protein family HMM TIGR00649; hypothetical protein complement(1084423..1086120) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913843 YP_493688.1 CDS SAUSA300_0990 NC_007793.1 1086120 1086338 R identified by match to protein family HMM PF07288; hypothetical protein complement(1086120..1086338) Staphylococcus aureus subsp. aureus USA300_FPR3757 3912963 YP_493689.1 CDS def NC_007793.1 1086819 1087370 R cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase complement(1086819..1087370) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914114 YP_493690.1 CDS SAUSA300_0992 NC_007793.1 1087735 1088361 D hypothetical protein 1087735..1088361 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913449 YP_493691.1 CDS pdhA NC_007793.1 1088532 1089644 D identified by match to protein family HMM PF00676; pyruvate dehydrogenase E1 component, alpha subunit 1088532..1089644 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913417 YP_493692.1 CDS pdhB NC_007793.1 1089648 1090625 D identified by match to protein family HMM PF02779; match to protein family HMM PF02780; pyruvate dehydrogenase E1 component, beta subunit 1089648..1090625 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913841 YP_493693.1 CDS SAUSA300_0995 NC_007793.1 1090716 1092008 D identified by similarity to GB:CAA37630.1; match to protein family HMM PF00198; match to protein family HMM PF00364; match to protein family HMM PF02817; branched-chain alpha-keto acid dehydrogenase subunit E2 1090716..1092008 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914653 YP_493694.1 CDS lpdA NC_007793.1 1092012 1093418 D E3 component of pyruvate complex; catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase 1092012..1093418 Staphylococcus aureus subsp. aureus USA300_FPR3757 3912866 YP_493695.1 CDS SAUSA300_0997 NC_007793.1 1093586 1093861 D identified by match to protein family HMM PF05256; hypothetical protein 1093586..1093861 Staphylococcus aureus subsp. aureus USA300_FPR3757 3915240 YP_493696.1 CDS SAUSA300_0998 NC_007793.1 1094005 1094544 D identified by match to protein family HMM PF01381; match to protein family HMM PF07883; hypothetical protein 1094005..1094544 Staphylococcus aureus subsp. aureus USA300_FPR3757 3912885 YP_493697.1 CDS potA NC_007793.1 1094557 1095651 D identified by match to protein family HMM PF00005; spermidine/putrescine ABC transporter ATP-binding protein 1094557..1095651 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913327 YP_493698.1 CDS potB NC_007793.1 1095644 1096441 D identified by match to protein family HMM PF00528; spermidine/putrescine ABC transporter permease 1095644..1096441 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913252 YP_493699.1 CDS potC NC_007793.1 1096447 1097256 D identified by match to protein family HMM PF00528; spermidine/putrescine ABC transporter permease 1096447..1097256 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914674 YP_493700.1 CDS potD NC_007793.1 1097256 1098329 D identified by match to protein family HMM PF01547; spermidine/putrescine ABC transporter spermidine/putrescine-binding protein 1097256..1098329 Staphylococcus aureus subsp. aureus USA300_FPR3757 3912945 YP_493701.1 CDS SAUSA300_1003 NC_007793.1 1098403 1099422 D hypothetical protein 1098403..1099422 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914655 YP_493702.1 CDS SAUSA300_1004 NC_007793.1 1099705 1100124 D hypothetical protein 1099705..1100124 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914672 YP_493703.1 CDS SAUSA300_1005 NC_007793.1 1100206 1101558 R identified by match to protein family HMM PF01566; match to protein family HMM TIGR01197; manganese transport protein MntH complement(1100206..1101558) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915356 YP_493704.1 CDS SAUSA300_1006 NC_007793.1 1101742 1102356 R identified by match to protein family HMM PF06335; hypothetical protein complement(1101742..1102356) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913415 YP_493705.1 CDS SAUSA300_1007 NC_007793.1 1102513 1103340 D identified by match to protein family HMM PF00459; inositol monophosphatase family protein 1102513..1103340 Staphylococcus aureus subsp. aureus USA300_FPR3757 3915159 YP_493706.1 CDS SAUSA300_1008 NC_007793.1 1103494 1103685 R hypothetical protein complement(1103494..1103685) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913599 YP_493707.1 CDS typA NC_007793.1 1103787 1105634 D identified by match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF03144; match to protein family HMM TIGR00231; match to protein family HMM TIGR01394; GTP-binding protein 1103787..1105634 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914828 YP_493708.1 CDS SAUSA300_1010 NC_007793.1 1105774 1105941 R hypothetical protein complement(1105774..1105941) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914416 YP_493709.1 CDS SAUSA300_1011 NC_007793.1 1105943 1106425 R hypothetical protein complement(1105943..1106425) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915213 YP_493710.1 CDS SAUSA300_1012 NC_007793.1 1106566 1106841 D depletion of this protein in Bacillus subtilis results in defects in cell morphology; crystal structure of Staphylococcus protein shows homodimer; putative ligand binding protein; hypothetical protein 1106566..1106841 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913633 YP_493711.1 CDS SAUSA300_1013 NC_007793.1 1107155 1108381 D identified by match to protein family HMM PF01098; cell cycle protein FtsW 1107155..1108381 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913530 YP_493712.1 CDS pyc NC_007793.1 1108935 1112387 D biotin-containing enzyme that catalyzes a two step carboxylation of pyruvate to oxaloacetate; pyruvate carboxylase 1108935..1112387 Staphylococcus aureus subsp. aureus USA300_FPR3757 3915123 YP_493713.1 CDS ctaA NC_007793.1 1112527 1113597 R identified by match to protein family HMM PF02628; cytochrome oxidase assembly protein complement(1112527..1113597) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913717 YP_493714.1 CDS cyoE NC_007793.1 1113878 1114789 D converts protoheme IX and farnesyl diphosphate to heme O; protoheme IX farnesyltransferase 1113878..1114789 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913627 YP_493715.1 CDS SAUSA300_1017 NC_007793.1 1114814 1115275 D identified by match to protein family HMM PF04238; hypothetical protein 1114814..1115275 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914132 YP_493716.1 CDS SAUSA300_1018 NC_007793.1 1115602 1116639 D identified by match to protein family HMM PF00188; hypothetical protein 1115602..1116639 Staphylococcus aureus subsp. aureus USA300_FPR3757 3915193 YP_493717.1 CDS SAUSA300_1019 NC_007793.1 1116655 1117089 D identified by match to protein family HMM PF07050; hypothetical protein 1116655..1117089 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913115 YP_493718.1 CDS SAUSA300_1020 NC_007793.1 1117152 1118078 R identified by match to protein family HMM PF03009; glycerophosphoryl diester phosphodiesterase family protein complement(1117152..1118078) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913973 YP_493719.1 CDS SAUSA300_1021 NC_007793.1 1118317 1118571 D hypothetical protein 1118317..1118571 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914911 YP_493720.1 CDS SAUSA300_1022 NC_007793.1 1118574 1118963 R hypothetical protein complement(1118574..1118963) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914072 YP_493721.1 CDS SAUSA300_1023 NC_007793.1 1119033 1119575 D identified by match to protein family HMM PF03602; match to protein family HMM PF05175; match to protein family HMM TIGR00095; hypothetical protein 1119033..1119575 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914879 YP_493722.1 CDS coaD NC_007793.1 1119577 1120059 D Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA; phosphopantetheine adenylyltransferase 1119577..1120059 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913914 YP_493723.1 CDS SAUSA300_1025 NC_007793.1 1120121 1121260 R identified by match to protein family HMM PF05636; hypothetical protein complement(1120121..1121260) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913955 YP_493724.1 CDS SAUSA300_1026 NC_007793.1 1121387 1121944 D identified by match to protein family HMM PF02620; hypothetical protein 1121387..1121944 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914640 YP_493725.1 CDS rpmF NC_007793.1 1122024 1122197 D some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 1122024..1122197 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913709 YP_493726.1 CDS SAUSA300_1028 NC_007793.1 1122351 1124288 R identified by match to protein family HMM PF00746; match to protein family HMM PF04650; match to protein family HMM PF05031; match to protein family HMM TIGR01167; match to protein family HMM TIGR01168; iron transport associated domain-containing protein complement(1122351..1124288) Staphylococcus aureus subsp. aureus USA300_FPR3757 3912872 YP_493727.1 CDS SAUSA300_1029 NC_007793.1 1124491 1125543 R identified by match to protein family HMM PF00746; match to protein family HMM PF05031; match to protein family HMM TIGR01167; iron transport associated domain-containing protein complement(1124491..1125543) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913728 YP_493728.1 CDS SAUSA300_1030 NC_007793.1 1125752 1126435 D identified by match to protein family HMM PF05031; iron transport associated domain-containing protein 1125752..1126435 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914973 YP_493729.1 CDS SAUSA300_1031 NC_007793.1 1126435 1127511 D hypothetical protein 1126435..1127511 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914697 YP_493730.1 CDS SAUSA300_1032 NC_007793.1 1127538 1128386 D identified by match to protein family HMM PF01497; putative iron compound ABC transporter iron compound-binding protein 1127538..1128386 Staphylococcus aureus subsp. aureus USA300_FPR3757 3915144 YP_493731.1 CDS SAUSA300_1033 NC_007793.1 1128399 1129364 D identified by match to protein family HMM PF01032; match to protein family HMM PF02653; iron/heme permease 1128399..1129364 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913316 YP_493732.1 CDS srtB NC_007793.1 1129426 1130160 D identified by match to protein family HMM PF07170; sortase B 1129426..1130160 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913868 YP_493733.1 CDS SAUSA300_1035 NC_007793.1 1130179 1130502 D iron regulated; catalyzes the release of heme from hemoglobin allowing bacterial pathogens to use the host heme as an iron source; heme-degrading monooxygenase IsdG 1130179..1130502 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913448 YP_493734.1 CDS SAUSA300_1036 NC_007793.1 1130886 1131626 D identified by match to protein family HMM PF00588; match to protein family HMM PF08032; RNA methyltransferase 1130886..1131626 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913504 YP_493735.1 CDS pheS NC_007793.1 1132007 1133065 D catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha 1132007..1133065 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914832 YP_493736.1 CDS pheT NC_007793.1 1133065 1135467 D catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta 1133065..1135467 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913473 YP_493737.1 CDS rnhC NC_007793.1 1135638 1136576 R An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids; ribonuclease HIII complement(1135638..1136576) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914336 YP_493738.1 CDS SAUSA300_1040 NC_007793.1 1136946 1137212 D identified by match to protein family HMM PF05164; hypothetical protein 1136946..1137212 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913319 YP_493739.1 CDS SAUSA300_1041 NC_007793.1 1137213 1137734 D identified by match to protein family HMM PF02674; hypothetical protein 1137213..1137734 Staphylococcus aureus subsp. aureus USA300_FPR3757 3912947 YP_493740.1 CDS SAUSA300_1042 NC_007793.1 1137807 1139519 D identified by match to protein family HMM PF02811; hypothetical protein 1137807..1139519 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914686 YP_493741.1 CDS mutS2 NC_007793.1 1139529 1141877 D MutS2; MutS-II; involved in blocking homologous and homeologous recombination; has ATPase activity stimulated by recombination intermediates; inhibits DNA strand exchange; recombination and DNA strand exchange inhibitor protein 1139529..1141877 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914094 YP_493742.1 CDS trx NC_007793.1 1142050 1142364 D identified by match to protein family HMM PF00085; match to protein family HMM TIGR01068; thioredoxin 1142050..1142364 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914790 YP_493743.2 CDS uvrC NC_007793.1 1142688 1144469 D The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C 1142688..1144469 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913389 YP_493744.1 CDS sdhC NC_007793.1 1144793 1145407 D identified by match to protein family HMM TIGR02046; succinate dehydrogenase, cytochrome b-558 subunit 1144793..1145407 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913069 YP_493745.1 CDS sdhA NC_007793.1 1145459 1147225 D part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; succinate dehydrogenase flavoprotein subunit 1145459..1147225 Staphylococcus aureus subsp. aureus USA300_FPR3757 3912768 YP_493746.1 CDS sdhB NC_007793.1 1147225 1148040 D part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase; succinate dehydrogenase iron-sulfur subunit 1147225..1148040 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913222 YP_493747.1 CDS murI NC_007793.1 1148276 1149076 D converts L-glutamate to D-glutamate, a component of peptidoglycan; glutamate racemase 1148276..1149076 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914103 YP_493748.1 CDS SAUSA300_1050 NC_007793.1 1149088 1149675 D hydrolyzes non-standard nucleotides such as xanthine and inosine; nucleoside-triphosphatase 1149088..1149675 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913580 YP_493749.1 CDS SAUSA300_1051 NC_007793.1 1149668 1150171 D identified by match to protein family HMM TIGR00040; hypothetical protein 1149668..1150171 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914977 YP_493750.1 CDS SAUSA300_1052 NC_007793.1 1150660 1150989 D fibrinogen-binding protein 1150660..1150989 Staphylococcus aureus subsp. aureus USA300_FPR3757 3915069 YP_493751.1 CDS SAUSA300_1053 NC_007793.1 1151358 1151759 R FLIPr; secreted protein that blocks the formyl peptide receptor-like 1 (FPRL1) found in neutrophils, monocytes, B cells, and NK cells; inhibits the binding of chemoattractants (such as formylated peptides) to FPRL1, which initiates the phagocyte mobilization towards the infection site; formyl peptide receptor-like 1 inhibitory protein complement(1151358..1151759) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914875 YP_493752.1 CDS SAUSA300_1054 NC_007793.1 1152431 1152937 D hypothetical protein 1152431..1152937 Staphylococcus aureus subsp. aureus USA300_FPR3757 3915132 YP_493753.1 CDS efb NC_007793.1 1153196 1153693 D fibrinogen-binding protein 1153196..1153693 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913615 YP_493754.1 CDS SAUSA300_1056 NC_007793.1 1153847 1154197 D hypothetical protein 1153847..1154197 Staphylococcus aureus subsp. aureus USA300_FPR3757 3915173 YP_493755.1 CDS SAUSA300_1057 NC_007793.1 1155657 1155890 R hypothetical protein complement(1155657..1155890) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913183 YP_493756.1 CDS SAUSA300_1058 NC_007793.1 1156367 1157326 R identified by match to protein family HMM PF07968; match to protein family HMM TIGR01002; alpha-hemolysin complement(1156367..1157326) Staphylococcus aureus subsp. aureus USA300_FPR3757 3912806 YP_493757.1 CDS SAUSA300_1059 NC_007793.1 1158771 1159487 R these proteins share structural homology to known superantigen proteins but do not exhibit any of the properties expected such as histocompatibility complex class II binding or broad T-cell activation; superantigen-like protein complement(1158771..1159487) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914342 YP_493758.1 CDS SAUSA300_1060 NC_007793.1 1159595 1160320 R these proteins share structural homology to known superantigen proteins but do not exhibit any of the properties expected such as histocompatibility complex class II binding or broad T-cell activation; superantigen-like protein complement(1159595..1160320) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914599 YP_493759.1 CDS SAUSA300_1061 NC_007793.1 1160415 1161140 R these proteins share structural homology to known superantigen proteins but do not exhibit any of the properties expected such as histocompatibility complex class II binding or broad T-cell activation; superantigen-like protein complement(1160415..1161140) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913379 YP_493760.1 CDS argF NC_007793.1 1161578 1162579 D catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation; ornithine carbamoyltransferase 1161578..1162579 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914619 YP_493761.1 CDS arcC NC_007793.1 1162602 1163534 D catalyzes the reversible synthesis of carbamate and ATP from carbamoyl phosphate and ADP; carbamate kinase 1162602..1163534 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914763 YP_493762.1 CDS SAUSA300_1064 NC_007793.1 1163706 1165262 D identified by match to protein family HMM PF03600; match to protein family HMM PF03606; match to protein family HMM PF06808; TRAP family protein 1163706..1165262 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913443 YP_493763.1 CDS SAUSA300_1065 NC_007793.1 1166102 1167049 R identified by match to protein family HMM PF03595; exfoliative toxin A complement(1166102..1167049) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914499 YP_493764.1 CDS SAUSA300_1067 NC_007793.1 1168398 1168532 D identified by match to protein family HMM PF05480; anti protein 1168398..1168532 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914569 YP_493765.1 CDS SAUSA300_1068 NC_007793.1 1168589 1168723 D identified by match to protein family HMM PF05480; anti protein 1168589..1168723 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913239 YP_493766.1 CDS SAUSA300_1069 NC_007793.1 1168847 1169542 D identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549; match to protein family HMM TIGR02254; hypothetical protein 1168847..1169542 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914301 YP_493767.1 CDS SAUSA300_1070 NC_007793.1 1169651 1170091 R identified by match to protein family HMM PF00583; hypothetical protein complement(1169651..1170091) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915179 YP_493768.1 CDS SAUSA300_1071 NC_007793.1 1170286 1171899 D hypothetical protein 1170286..1171899 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914862 YP_493769.1 CDS mraZ NC_007793.1 1172043 1172474 D MraZ; UPF0040; crystal structure shows similarity to AbrB; cell division protein MraZ 1172043..1172474 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913964 YP_493770.1 CDS mraW NC_007793.1 1172511 1173425 D identified by match to protein family HMM PF01795; match to protein family HMM TIGR00006; S-adenosyl-methyltransferase MraW 1172511..1173425 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913908 YP_493771.1 CDS ftsL NC_007793.1 1173439 1173840 D identified by match to protein family HMM PF04977; match to protein family HMM TIGR02209; cell division protein 1173439..1173840 Staphylococcus aureus subsp. aureus USA300_FPR3757 3912819 YP_493772.1 CDS pbpA NC_007793.1 1173821 1176055 D identified by match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM PF03793; penicillin-binding protein 1 1173821..1176055 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914624 YP_493773.1 CDS mraY NC_007793.1 1176347 1177312 D First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase 1176347..1177312 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914548 YP_493774.1 CDS murD NC_007793.1 1177314 1178663 D UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase 1177314..1178663 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914137 YP_493775.1 CDS divIB NC_007793.1 1178679 1179998 D identified by match to protein family HMM PF03799; cell division protein 1178679..1179998 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913636 YP_493776.1 CDS ftsA NC_007793.1 1180104 1181516 D identified by match to protein family HMM PF02491; match to protein family HMM TIGR01174; cell division protein ftsA 1180104..1181516 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913698 YP_493777.1 CDS ftsZ NC_007793.1 1181549 1182721 D GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function; cell division protein FtsZ 1181549..1182721 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914837 YP_493778.1 CDS SAUSA300_1081 NC_007793.1 1183107 1183772 D identified by match to protein family HMM PF02578; hypothetical protein 1183107..1183772 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914051 YP_493779.1 CDS SAUSA300_1082 NC_007793.1 1183796 1184464 D identified by match to protein family HMM PF01168; match to protein family HMM TIGR00044; hypothetical protein 1183796..1184464 Staphylococcus aureus subsp. aureus USA300_FPR3757 3915153 YP_493780.1 CDS SAUSA300_1083 NC_007793.1 1184461 1185024 D identified by match to protein family HMM PF04472; hypothetical protein 1184461..1185024 Staphylococcus aureus subsp. aureus USA300_FPR3757 3915111 YP_493781.1 CDS SAUSA300_1084 NC_007793.1 1185036 1185326 D identified by match to protein family HMM PF02325; hypothetical protein 1185036..1185326 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914880 YP_493782.1 CDS SAUSA300_1085 NC_007793.1 1185409 1186215 D identified by match to protein family HMM PF01479; hypothetical protein 1185409..1186215 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914413 YP_493783.1 CDS SAUSA300_1086 NC_007793.1 1186239 1186856 D identified by match to protein family HMM PF05103; hypothetical protein 1186239..1186856 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914026 YP_493784.1 CDS ileS NC_007793.1 1187077 1189830 D IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 1 subfamily; some organisms carry two different copies of this enzyme; isoleucyl-tRNA synthetase 1187077..1189830 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914067 YP_493785.1 CDS SAUSA300_1088 NC_007793.1 1190120 1190917 D identified by match to protein family HMM PF00903; glyoxalase family protein 1190120..1190917 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914520 YP_493786.1 CDS lspA NC_007793.1 1191741 1192232 D lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase 1191741..1192232 Staphylococcus aureus subsp. aureus USA300_FPR3757 3912837 YP_493787.1 CDS SAUSA300_1090 NC_007793.1 1192232 1193149 D identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00005; hypothetical protein 1192232..1193149 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914384 YP_493788.1 CDS pyrR NC_007793.1 1193548 1194075 D regulates pyrimidine biosynthesis by binding to the mRNA of the pyr genes, also has been shown to have uracil phosphoribosyltransferase activity; bifunctional pyrimidine regulatory protein PyrR uracil phosphoribosyltransferase 1193548..1194075 Staphylococcus aureus subsp. aureus USA300_FPR3757 3915205 YP_493789.1 CDS pyrP NC_007793.1 1194293 1195600 D identified by match to protein family HMM PF00860; match to protein family HMM TIGR00801; uracil permease 1194293..1195600 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914365 YP_493790.1 CDS pyrB NC_007793.1 1195628 1196509 D catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis; aspartate carbamoyltransferase catalytic subunit 1195628..1196509 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913022 YP_493791.1 CDS pyrC NC_007793.1 1196527 1197801 D catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis; dihydroorotase 1196527..1197801 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914806 YP_493792.1 CDS carA NC_007793.1 1197803 1198903 D catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers; carbamoyl phosphate synthase small subunit 1197803..1198903 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914633 YP_493793.1 CDS carB NC_007793.1 1198896 1202069 D four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity; carbamoyl phosphate synthase large subunit 1198896..1202069 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913300 YP_493794.1 CDS pyrF NC_007793.1 1202179 1202871 D type 1 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase; orotidine 5'-phosphate decarboxylase 1202179..1202871 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914998 YP_493795.1 CDS pyrE NC_007793.1 1202871 1203482 D involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate; orotate phosphoribosyltransferase 1202871..1203482 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914229 YP_493796.1 CDS SAUSA300_1099 NC_007793.1 1203512 1203724 D hypothetical protein 1203512..1203724 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913326 YP_493797.1 CDS SAUSA300_1100 NC_007793.1 1204161 1204562 D identified by match to protein family HMM PF06983; hypothetical protein 1204161..1204562 Staphylococcus aureus subsp. aureus USA300_FPR3757 3912889 YP_493798.1 CDS SAUSA300_1101 NC_007793.1 1204825 1206522 R identified by match to protein family HMM PF05670; match to protein family HMM PF05833; putative fibronectin/fibrinogen binding protein complement(1204825..1206522) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915201 YP_493799.1 CDS gmk NC_007793.1 1206797 1207420 D Essential for recycling GMP and indirectly, cGMP; guanylate kinase 1206797..1207420 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913657 YP_493800.1 CDS rpoZ NC_007793.1 1207420 1207638 D Promotes RNA polymerase assembly; latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits; DNA-directed RNA polymerase subunit omega 1207420..1207638 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914091 YP_493801.1 CDS coaBC NC_007793.1 1207854 1209053 D identified by match to protein family HMM PF02441; match to protein family HMM PF04127; match to protein family HMM TIGR00521; phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase 1207854..1209053 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914611 YP_493802.1 CDS priA NC_007793.1 1209053 1211461 D identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF04851; match to protein family HMM TIGR00595; primosomal protein N` 1209053..1211461 Staphylococcus aureus subsp. aureus USA300_FPR3757 3912891 YP_493803.1 CDS SAUSA300_1106 NC_007793.1 1211967 1212920 D putative lipoprotein 1211967..1212920 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913052 YP_493804.1 CDS SAUSA300_1107 NC_007793.1 1213083 1213361 R identified by match to protein family HMM PF05154; hypothetical protein complement(1213083..1213361) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913952 YP_493805.1 CDS def NC_007793.1 1213585 1214073 D cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase 1213585..1214073 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914800 YP_493806.1 CDS fmt NC_007793.1 1214066 1215001 D identified by match to protein family HMM PF00551; match to protein family HMM PF02911; match to protein family HMM TIGR00460; methionyl-tRNA formyltransferase 1214066..1215001 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914228 YP_493807.1 CDS sun NC_007793.1 1214998 1216305 D identified by match to protein family HMM PF01029; match to protein family HMM PF01189; match to protein family HMM TIGR00563; ribosomal RNA small subunit methyltransferase B 1214998..1216305 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913006 YP_493808.1 CDS SAUSA300_1111 NC_007793.1 1216308 1217402 D 23S rRNA m2A2503 methyltransferase; methylates the C2 position of the A2530 nucleotide in 23S rRNA; may be involved in antibiotic resistance; ribosomal RNA large subunit methyltransferase N 1216308..1217402 Staphylococcus aureus subsp. aureus USA300_FPR3757 3915122 YP_493809.1 CDS SAUSA300_1112 NC_007793.1 1217409 1218152 D identified by match to protein family HMM PF00481; protein phosphatase 2C domain-containing protein 1217409..1218152 Staphylococcus aureus subsp. aureus USA300_FPR3757 3912832 YP_493810.1 CDS pknB NC_007793.1 1218149 1220143 D identified by match to protein family HMM PF00069; match to protein family HMM PF03793; protein kinase 1218149..1220143 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914306 YP_493811.2 CDS rsgA NC_007793.1 1220371 1221246 D identified by match to protein family HMM PF03193; match to protein family HMM TIGR00157; hypothetical protein 1220371..1221246 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913712 YP_493812.1 CDS rpe NC_007793.1 1221247 1221891 D identified by match to protein family HMM PF00834; match to protein family HMM TIGR01163; ribulose-phosphate 3-epimerase 1221247..1221891 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913214 YP_493813.1 CDS SAUSA300_1116 NC_007793.1 1221898 1222539 D identified by match to protein family HMM PF04263; match to protein family HMM PF04265; match to protein family HMM TIGR01378; hypothetical protein 1221898..1222539 Staphylococcus aureus subsp. aureus USA300_FPR3757 3915362 YP_493814.1 CDS rpmB NC_007793.1 1222920 1223108 R required for 70S ribosome assembly; 50S ribosomal protein L28 complement(1222920..1223108) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914187 YP_493815.1 CDS SAUSA300_1118 NC_007793.1 1223551 1223925 D identified by match to protein family HMM PF03780; hypothetical protein 1223551..1223925 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913077 YP_493816.1 CDS SAUSA300_1119 NC_007793.1 1223940 1225586 D identified by match to protein family HMM PF02734; hypothetical protein 1223940..1225586 Staphylococcus aureus subsp. aureus USA300_FPR3757 3912994 YP_493817.1 CDS recG NC_007793.1 1225776 1227836 D catalyzes branch migration in Holliday junction intermediates; ATP-dependent DNA helicase RecG 1225776..1227836 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913866 YP_493818.1 CDS SAUSA300_1121 NC_007793.1 1228039 1228611 D negative regulator of genes involved in fatty acid and phospholipid biosynthesis for gram positive bacteria; fatty acid biosynthesis transcriptional regulator 1228039..1228611 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913564 YP_493819.1 CDS plsX NC_007793.1 1228616 1229602 D involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY; putative glycerol-3-phosphate acyltransferase PlsX 1228616..1229602 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913494 YP_493820.1 CDS fabD NC_007793.1 1229595 1230521 D identified by match to protein family HMM PF00698; match to protein family HMM TIGR00128; malonyl CoA-acyl carrier protein transacylase 1229595..1230521 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914203 YP_493821.1 CDS fabG NC_007793.1 1230514 1231248 D identified by match to protein family HMM PF00106; match to protein family HMM TIGR01830; 3-oxoacyl-(acyl-carrier-protein) reductase 1230514..1231248 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914641 YP_493822.1 CDS acpP NC_007793.1 1231491 1231724 D carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein 1231491..1231724 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914278 YP_493823.1 CDS rnc NC_007793.1 1231840 1232571 D cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity; ribonuclease III 1231840..1232571 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913293 YP_493824.1 CDS smc NC_007793.1 1232718 1236284 D identified by match to protein family HMM PF02463; match to protein family HMM PF06470; match to protein family HMM TIGR00650; match to protein family HMM TIGR02168; chromosome segregation protein SMC 1232718..1236284 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913043 YP_493825.1 CDS ftsY NC_007793.1 1236284 1237534 D identified by match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM TIGR00064; signal recognition particle-docking protein FtsY 1236284..1237534 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913687 YP_493826.1 CDS SAUSA300_1129 NC_007793.1 1237521 1237853 D identified by match to protein family HMM PF04297; putative DNA-binding protein 1237521..1237853 Staphylococcus aureus subsp. aureus USA300_FPR3757 3915044 YP_493827.1 CDS ffh NC_007793.1 1237879 1239246 D identified by match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM PF02978; match to protein family HMM TIGR00959; signal recognition particle protein 1237879..1239246 Staphylococcus aureus subsp. aureus USA300_FPR3757 3912873 YP_493828.1 CDS rpsP NC_007793.1 1239681 1239956 D binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16 1239681..1239956 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914380 YP_493829.1 CDS rimM NC_007793.1 1240144 1240647 D Essential for efficient processing of 16S rRNA; 16S rRNA-processing protein RimM 1240144..1240647 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914847 YP_493830.1 CDS trmD NC_007793.1 1240647 1241384 D methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; tRNA (guanine-N(1)-)-methyltransferase 1240647..1241384 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913404 YP_493831.1 CDS rplS NC_007793.1 1241487 1241837 D this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 1241487..1241837 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914457 YP_493832.1 CDS SAUSA300_1135 NC_007793.1 1242081 1244687 R hypothetical protein complement(1242081..1244687) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913679 YP_493833.1 CDS rbgA NC_007793.1 1245088 1245972 D essential GTPase; functions in ribosome assembly; binds a unique part of the 23S rRNA; interacts with ribosomal protein L25(Ctc); ribosomal biogenesis GTPase 1245088..1245972 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914854 YP_493834.1 CDS rnhB NC_007793.1 1245956 1246723 D RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids; ribonuclease HII 1245956..1246723 Staphylococcus aureus subsp. aureus USA300_FPR3757 3912975 YP_493835.1 CDS sucC NC_007793.1 1246832 1247998 D catalyzes the interconversion of succinyl-CoA and succinate; succinyl-CoA synthetase subunit beta 1246832..1247998 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913421 YP_493836.1 CDS sucD NC_007793.1 1248020 1248928 D Catalyzes the only substrate-level phosphorylation in the TCA cycle; succinyl-CoA synthetase subunit alpha 1248020..1248928 Staphylococcus aureus subsp. aureus USA300_FPR3757 3915303 YP_493837.1 CDS lytN NC_007793.1 1249122 1250273 D identified by match to protein family HMM PF01476; match to protein family HMM PF04650; match to protein family HMM PF05257; match to protein family HMM TIGR01168; cell wall hydrolase 1249122..1250273 Staphylococcus aureus subsp. aureus USA300_FPR3757 3912995 YP_493838.1 CDS SAUSA300_1141 NC_007793.1 1250301 1251545 D identified by match to protein family HMM PF02388; endopeptidase resistance protein 1250301..1251545 Staphylococcus aureus subsp. aureus USA300_FPR3757 3912983 YP_493839.1 CDS dprA NC_007793.1 1251718 1252590 D identified by match to protein family HMM PF02481; match to protein family HMM TIGR00732; DNA protecting protein DprA 1251718..1252590 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914195 YP_493840.1 CDS topA NC_007793.1 1252764 1254839 D catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity; DNA topoisomerase I 1252764..1254839 Staphylococcus aureus subsp. aureus USA300_FPR3757 3915296 YP_493841.1 CDS gid NC_007793.1 1254995 1256302 D TrmFO; Gid; glucose-inhibited division protein; similar to GidA; the gene from Bacillus subtilis encodes a tRNA-methyltransferase that utilizes folate as the carbon donor and bound flavin as reductant; modifies tRNA at position 54 (uridine) of the T-psi loop to form a C5-methyluridine; tRNA (uracil-5-)-methyltransferase Gid 1254995..1256302 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913813 YP_493842.1 CDS xerC NC_007793.1 1256719 1257615 D identified by match to protein family HMM PF00589; match to protein family HMM PF02899; match to protein family HMM TIGR02224; tyrosine recombinase xerC 1256719..1257615 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913529 YP_493843.1 CDS hslV NC_007793.1 1257612 1258157 D heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease peptidase subunit 1257612..1258157 Staphylococcus aureus subsp. aureus USA300_FPR3757 3915083 YP_493844.1 CDS hslU NC_007793.1 1258223 1259626 D heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease ATP-binding subunit HslU 1258223..1259626 Staphylococcus aureus subsp. aureus USA300_FPR3757 3915163 YP_493845.1 CDS codY NC_007793.1 1259651 1260424 D CodY; DNA-binding protein that represses the expression of many genes that are induced as cells make the transition from rapid exponential growth to stationary phase (By similarity). It is a GTP-binding protein that senses the intracellular GTP concentration as an indicator of nutritional limitations. At low GTP concentration it no longer binds GTP and stop to act as a transcriptional repressor; transcriptional repressor CodY 1259651..1260424 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913475 YP_493846.1 CDS rpsB NC_007793.1 1260766 1261533 D one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 1260766..1261533 Staphylococcus aureus subsp. aureus USA300_FPR3757 3915049 YP_493847.1 CDS tsf NC_007793.1 1261715 1262596 D EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts 1261715..1262596 Staphylococcus aureus subsp. aureus USA300_FPR3757 3912785 YP_493848.1 CDS pyrH NC_007793.1 1262733 1263455 D Catalyzes the phosphorylation of UMP to UDP; uridylate kinase 1262733..1263455 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913879 YP_493849.1 CDS frr NC_007793.1 1263474 1264028 D Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; ribosome recycling factor 1263474..1264028 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913123 YP_493850.1 CDS uppS NC_007793.1 1264401 1265171 D catalyzes the formation of undecaprenyl pyrophosphate from isopentenyl pyrophosphate; undecaprenyl pyrophosphate synthase 1264401..1265171 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913231 YP_493851.1 CDS cdsA NC_007793.1 1265178 1265960 D identified by match to protein family HMM PF01148; phosphatidate cytidylyltransferase 1265178..1265960 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913399 YP_493852.1 CDS SAUSA300_1155 NC_007793.1 1266324 1267508 D identified by match to protein family HMM PF02163; putative membrane-associated zinc metalloprotease 1266324..1267508 Staphylococcus aureus subsp. aureus USA300_FPR3757 3915271 YP_493853.1 CDS proS NC_007793.1 1267528 1269231 D catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase 1267528..1269231 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914444 YP_493854.1 CDS polC NC_007793.1 1269495 1273805 D catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; required for leading strand synthesis; PolC exhibits 3' to 5' exonuclease activity; DNA polymerase III PolC 1269495..1273805 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913695 YP_493855.1 CDS SAUSA300_1158 NC_007793.1 1274095 1274562 D in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins; hypothetical protein 1274095..1274562 Staphylococcus aureus subsp. aureus USA300_FPR3757 3912973 YP_493856.1 CDS nusA NC_007793.1 1274583 1275758 D modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; transcription elongation factor NusA 1274583..1275758 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913230 YP_493857.1 CDS SAUSA300_1160 NC_007793.1 1275779 1276063 D identified by match to protein family HMM PF04296; hypothetical protein 1275779..1276063 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914095 YP_493858.1 CDS SAUSA300_1161 NC_007793.1 1276060 1276377 D identified by match to protein family HMM PF01248; ribosomal protein L7Ae 1276060..1276377 Staphylococcus aureus subsp. aureus USA300_FPR3757 3912901 YP_493859.1 CDS infB NC_007793.1 1276382 1278499 D Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 1276382..1278499 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914561 YP_493860.1 CDS rbfA NC_007793.1 1278885 1279235 D associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock; ribosome-binding factor A 1278885..1279235 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914468 YP_493861.1 CDS truB NC_007793.1 1279404 1280321 D catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs; tRNA pseudouridine synthase B 1279404..1280321 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913794 YP_493862.1 CDS ribF NC_007793.1 1280336 1281307 D identified by match to protein family HMM PF01687; match to protein family HMM PF06574; match to protein family HMM TIGR00083; riboflavin biosynthesis protein ribF 1280336..1281307 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913903 YP_493863.1 CDS rpsO NC_007793.1 1281422 1281691 D primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 1281422..1281691 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914375 YP_493864.1 CDS pnpA NC_007793.1 1282061 1284157 D identified by match to protein family HMM PF00013; match to protein family HMM PF00575; match to protein family HMM PF01138; match to protein family HMM PF03725; match to protein family HMM PF03726; polynucleotide phosphorylase/polyadenylase 1282061..1284157 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914142 YP_493865.1 CDS SAUSA300_1168 NC_007793.1 1284342 1286066 D identified by match to protein family HMM PF00753; match to protein family HMM PF07521; RNA-metabolising metallo-beta-lactamase 1284342..1286066 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913610 YP_493866.1 CDS ftsK NC_007793.1 1286448 1288691 D identified by match to protein family HMM PF01580; DNA translocase FtsK 1286448..1288691 Staphylococcus aureus subsp. aureus USA300_FPR3757 3912998 YP_493867.1 CDS SAUSA300_1170 NC_007793.1 1288696 1289409 D identified by match to protein family HMM PF00392; match to protein family HMM PF07702; GntR family transcriptional regulator 1288696..1289409 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913264 YP_493868.1 CDS SAUSA300_1171 NC_007793.1 1289440 1290705 D identified by match to protein family HMM PF05193; hypothetical protein 1289440..1290705 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914613 YP_493869.1 CDS SAUSA300_1172 NC_007793.1 1290705 1291991 D identified by match to protein family HMM PF00675; match to protein family HMM PF05193; M16 family peptidase 1290705..1291991 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913161 YP_493870.1 CDS SAUSA300_1173 NC_007793.1 1291991 1292695 D identified by match to protein family HMM PF00106; match to protein family HMM PF01073; putative acetoacetyl-CoA reductase 1291991..1292695 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914844 YP_493871.1 CDS SAUSA300_1174 NC_007793.1 1292800 1293627 D hypothetical protein 1292800..1293627 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913325 YP_493872.1 CDS SAUSA300_1175 NC_007793.1 1293646 1294038 D hypothetical protein 1293646..1294038 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913639 YP_493873.1 CDS pgsA NC_007793.1 1294072 1294650 D identified by match to protein family HMM PF01066; match to protein family HMM TIGR00560; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 1294072..1294650 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914475 YP_493874.1 CDS cinA NC_007793.1 1294877 1296028 D identified by match to protein family HMM PF00994; match to protein family HMM TIGR00200; competence/damage-inducible protein cinA 1294877..1296028 Staphylococcus aureus subsp. aureus USA300_FPR3757 3912940 YP_493875.2 CDS recA NC_007793.1 1296193 1297236 D catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs; recombinase A 1296193..1297236 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913385 YP_493876.1 CDS SAUSA300_1179 NC_007793.1 1297590 1299149 D protein from Staphylococcus aureus has phosphodiesterase activity against 2'-3'-cAMP and 2'-3'-cGMP; phosphodiesterase 1297590..1299149 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914797 YP_493877.1 CDS SAUSA300_1180 NC_007793.1 1299446 1299661 R hypothetical protein complement(1299446..1299661) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915060 YP_493878.1 CDS SAUSA300_1181 NC_007793.1 1299835 1300632 D identified by match to protein family HMM PF00149; match to protein family HMM TIGR00282; hypothetical protein 1299835..1300632 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914705 YP_493879.1 CDS SAUSA300_1182 NC_007793.1 1300772 1302532 D identified by match to protein family HMM PF01558; match to protein family HMM PF01855; pyruvate ferredoxin oxidoreductase, alpha subunit 1300772..1302532 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913198 YP_493880.1 CDS SAUSA300_1183 NC_007793.1 1302533 1303399 D catalyzes the coenzyme A dependent formation of succinyl-CoA from 2-oxoglutarate and ferredoxin; 2-oxoglutarate ferredoxin oxidoreductase subunit beta 1302533..1303399 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913120 YP_493881.1 CDS SAUSA300_1184 NC_007793.1 1303493 1303786 D hypothetical protein 1303493..1303786 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913072 YP_493882.1 CDS miaB NC_007793.1 1303920 1305464 D catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A); (dimethylallyl)adenosine tRNA methylthiotransferase 1303920..1305464 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914602 YP_493883.1 CDS SAUSA300_1186 NC_007793.1 1305465 1305830 D hypothetical protein 1305465..1305830 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914896 YP_493884.1 CDS SAUSA300_1187 NC_007793.1 1305857 1306348 D identified by match to protein family HMM TIGR02359; hypothetical protein 1305857..1306348 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914239 YP_493885.1 CDS mutS NC_007793.1 1306747 1309269 D This protein performs the mismatch recognition step during the DNA repair process; DNA mismatch repair protein MutS 1306747..1309269 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913979 YP_493886.1 CDS mutL NC_007793.1 1309282 1311291 D This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex; DNA mismatch repair protein 1309282..1311291 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914092 YP_493887.1 CDS glpP NC_007793.1 1311297 1311839 D identified by match to protein family HMM PF04309; glycerol uptake operon antiterminator regulatory protein 1311297..1311839 Staphylococcus aureus subsp. aureus USA300_FPR3757 3915035 YP_493888.1 CDS glpF NC_007793.1 1312304 1313122 D identified by match to protein family HMM PF00230; match to protein family HMM TIGR00861; glycerol uptake facilitator 1312304..1313122 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914979 YP_493889.1 CDS glpK NC_007793.1 1313251 1314747 D Converts glycerol and ADP to glycerol-3-phosphate and ADP; glycerol kinase 1313251..1314747 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913238 YP_493890.1 CDS glpD NC_007793.1 1314905 1316578 D identified by match to protein family HMM PF01266; aerobic glycerol-3-phosphate dehydrogenase 1314905..1316578 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914295 YP_493891.1 CDS SAUSA300_1194 NC_007793.1 1316728 1317642 D identified by match to protein family HMM PF00561; alpha/beta fold family hydrolase 1316728..1317642 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913410 YP_493892.1 CDS miaA NC_007793.1 1317660 1318595 D IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity; tRNA delta(2)-isopentenylpyrophosphate transferase 1317660..1318595 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914071 YP_493893.1 CDS hfq NC_007793.1 1318610 1318843 D identified by match to protein family HMM PF01423; match to protein family HMM TIGR02383; RNA chaperone, host factor-1 protein 1318610..1318843 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913112 YP_493894.1 CDS SAUSA300_1197 NC_007793.1 1319065 1319541 R identified by match to protein family HMM PF00255; glutathione peroxidase complement(1319065..1319541) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915120 YP_493895.1 CDS SAUSA300_1198 NC_007793.1 1319653 1320891 D identified by match to protein family HMM PF01926; match to protein family HMM PF04471; putative GTP-binding protein 1319653..1320891 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914363 YP_493896.1 CDS SAUSA300_1199 NC_007793.1 1320910 1322148 D identified by match to protein family HMM PF01053; match to protein family HMM PF06838; hypothetical protein 1320910..1322148 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914654 YP_493897.1 CDS glnR NC_007793.1 1322391 1322759 D identified by match to protein family HMM PF00376; glutamine synthetase repressor 1322391..1322759 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913495 YP_493898.1 CDS glnA NC_007793.1 1322778 1324118 D identified by match to protein family HMM PF00120; match to protein family HMM PF03951; match to protein family HMM TIGR00653; glutamine synthetase, type I 1322778..1324118 Staphylococcus aureus subsp. aureus USA300_FPR3757 3915364 YP_493899.1 CDS SAUSA300_1202 NC_007793.1 1325509 1325721 D hypothetical protein 1325509..1325721 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914152 YP_493900.1 CDS SAUSA300_1203 NC_007793.1 1326015 1326221 D hypothetical protein 1326015..1326221 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914327 YP_493901.1 CDS SAUSA300_1204 NC_007793.1 1327460 1327645 D hypothetical protein 1327460..1327645 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913752 YP_493902.1 CDS SAUSA300_1205 NC_007793.1 1328157 1328261 D hypothetical protein 1328157..1328261 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914701 YP_493903.1 CDS SAUSA300_1206 NC_007793.1 1328390 1328641 D hypothetical protein 1328390..1328641 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914798 YP_493904.1 CDS SAUSA300_1207 NC_007793.1 1328687 1329271 D identified by match to protein family HMM TIGR01641; hypothetical protein 1328687..1329271 Staphylococcus aureus subsp. aureus USA300_FPR3757 3912821 YP_493905.1 CDS SAUSA300_1208 NC_007793.1 1329392 1329640 D hypothetical protein 1329392..1329640 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913335 YP_493906.1 CDS SAUSA300_1209 NC_007793.1 1330520 1330654 D hypothetical protein 1330520..1330654 Staphylococcus aureus subsp. aureus USA300_FPR3757 3915084 YP_493907.1 CDS SAUSA300_1210 NC_007793.1 1330746 1331036 D hypothetical protein 1330746..1331036 Staphylococcus aureus subsp. aureus USA300_FPR3757 3912992 YP_493908.1 CDS SAUSA300_1211 NC_007793.1 1331047 1331241 D hypothetical protein 1331047..1331241 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913153 YP_493909.1 CDS SAUSA300_1212 NC_007793.1 1331291 1331632 D hypothetical protein 1331291..1331632 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914118 YP_493910.1 CDS SAUSA300_1213 NC_007793.1 1331639 1331830 D hypothetical protein 1331639..1331830 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913398 YP_493911.1 CDS SAUSA300_1214 NC_007793.1 1332379 1333404 R identified by match to protein family HMM PF01212; hypothetical protein complement(1332379..1333404) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914276 YP_493912.1 CDS SAUSA300_1215 NC_007793.1 1333674 1333871 D hypothetical protein 1333674..1333871 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914059 YP_493913.1 CDS SAUSA300_1216 NC_007793.1 1333929 1335410 D identified by match to protein family HMM PF00614; cardiolipin synthetase 1333929..1335410 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913631 YP_493914.1 CDS SAUSA300_1217 NC_007793.1 1335585 1336493 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 1335585..1336493 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914420 YP_493915.1 CDS SAUSA300_1218 NC_007793.1 1336462 1337193 D identified by match to protein family HMM PF01061; ABC transporter permease 1336462..1337193 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914200 YP_493916.1 CDS SAUSA300_1219 NC_007793.1 1337197 1338288 D identified by match to protein family HMM PF02518; match to protein family HMM PF07730; putative sensor histidine kinase 1337197..1338288 Staphylococcus aureus subsp. aureus USA300_FPR3757 3915176 YP_493917.1 CDS SAUSA300_1220 NC_007793.1 1338285 1338887 D identified by match to protein family HMM PF00072; match to protein family HMM PF00196; LuxR family DNA-binding response regulator 1338285..1338887 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914910 YP_493918.1 CDS SAUSA300_1221 NC_007793.1 1339000 1339188 R hypothetical protein complement(1339000..1339188) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913330 YP_493919.1 CDS nuc NC_007793.1 1339327 1339860 D identified by match to protein family HMM PF00565; thermonuclease 1339327..1339860 Staphylococcus aureus subsp. aureus USA300_FPR3757 3915119 YP_493920.1 CDS SAUSA300_1223 NC_007793.1 1340003 1340857 R hypothetical protein complement(1340003..1340857) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915165 YP_493921.1 CDS SAUSA300_1224 NC_007793.1 1341188 1341763 D hypothetical protein 1341188..1341763 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913229 YP_493922.1 CDS SAUSA300_1225 NC_007793.1 1341817 1343199 R catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; lysine and threonine sensitive; aspartate kinase complement(1341817..1343199) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913830 YP_493923.1 CDS SAUSA300_1226 NC_007793.1 1343390 1344670 D catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine; homoserine dehydrogenase 1343390..1344670 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913900 YP_493924.1 CDS thrC NC_007793.1 1344676 1345737 D catalyzes the formation of L-threonine from O-phospho-L-homoserine; threonine synthase 1344676..1345737 Staphylococcus aureus subsp. aureus USA300_FPR3757 3915053 YP_493925.1 CDS thrB NC_007793.1 1345739 1346653 D catalyzes the formation of O-phospho-L-homoserine from L-homoserine in threonine biosynthesis from asparate; homoserine kinase 1345739..1346653 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914823 YP_493926.1 CDS SAUSA300_1229 NC_007793.1 1346711 1347514 D identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484; HAD superfamily hydrolase 1346711..1347514 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914490 YP_493927.1 CDS SAUSA300_1230 NC_007793.1 1347807 1348121 R hypothetical protein complement(1347807..1348121) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914776 YP_493928.1 CDS SAUSA300_1231 NC_007793.1 1348339 1349793 R identified by match to protein family HMM PF00324; gamma-aminobutyrate permease complement(1348339..1349793) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913844 YP_493929.1 CDS SAUSA300_1232 NC_007793.1 1349997 1351514 D identified by match to protein family HMM PF00199; catalase 1349997..1351514 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914723 YP_493930.2 CDS rpmG NC_007793.1 1351605 1351754 D in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif; 50S ribosomal protein L33 1351605..1351754 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914217 YP_493931.1 CDS rpsN NC_007793.1 1352208 1352477 D located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif; 30S ribosomal protein S14 1352208..1352477 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914814 YP_493932.1 CDS guaC NC_007793.1 1352634 1353611 D identified by match to protein family HMM PF00478; match to protein family HMM TIGR01306; guanosine 5'-monophosphate oxidoreductase 1352634..1353611 Staphylococcus aureus subsp. aureus USA300_FPR3757 3915209 YP_493933.1 CDS SAUSA300_1236 NC_007793.1 1353786 1354649 D identified by match to protein family HMM PF00188; hypothetical protein 1353786..1354649 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914525 YP_493934.1 CDS lexA NC_007793.1 1355029 1355652 R Represses a number of genes involved in the response to DNA damage; LexA repressor complement(1355029..1355652) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913621 YP_493935.1 CDS SAUSA300_1238 NC_007793.1 1356164 1356403 D identified by match to protein family HMM PF05979; hypothetical protein 1356164..1356403 Staphylococcus aureus subsp. aureus USA300_FPR3757 3912968 YP_493936.1 CDS tkt NC_007793.1 1356635 1358512 D identified by match to protein family HMM PF00456; match to protein family HMM PF02779; match to protein family HMM PF02780; match to protein family HMM TIGR00232; transketolase 1356635..1358512 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914720 YP_493937.1 CDS SAUSA300_1240 NC_007793.1 1358745 1359032 D identified by match to protein family HMM PF03672; hypothetical protein 1358745..1359032 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913408 YP_493938.1 CDS SAUSA300_1241 NC_007793.1 1359250 1359678 D identified by match to protein family HMM PF07301; hypothetical protein 1359250..1359678 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913758 YP_493939.1 CDS sbcD NC_007793.1 1359802 1360923 D identified by match to protein family HMM PF00149; match to protein family HMM TIGR00619; exonuclease SbcD 1359802..1360923 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913269 YP_493940.1 CDS sbcC NC_007793.1 1360927 1363956 D exonuclease SbcC 1360927..1363956 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913233 YP_493941.1 CDS mscL NC_007793.1 1364027 1364464 R forms homopentamer; channel that opens in response to pressure or hypoosmotic shock; large-conductance mechanosensitive channel complement(1364027..1364464) Staphylococcus aureus subsp. aureus USA300_FPR3757 3912966 YP_493942.1 CDS opuD NC_007793.1 1364593 1366239 D identified by match to protein family HMM PF02028; match to protein family HMM TIGR00842; glycine betaine transporter opuD 1364593..1366239 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914646 YP_493943.1 CDS acnA NC_007793.1 1367131 1369836 D Catalyzes the conversion of citrate to isocitrate; aconitate hydratase 1367131..1369836 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914208 YP_493944.1 CDS SAUSA300_1247 NC_007793.1 1370016 1370483 D identified by match to protein family HMM PF03061; match to protein family HMM TIGR00051; hypothetical protein 1370016..1370483 Staphylococcus aureus subsp. aureus USA300_FPR3757 3915003 YP_493945.1 CDS SAUSA300_1248 NC_007793.1 1370690 1370986 R identified by match to protein family HMM PF01521; hypothetical protein complement(1370690..1370986) Staphylococcus aureus subsp. aureus USA300_FPR3757 3912789 YP_493946.1 CDS SAUSA300_1249 NC_007793.1 1371362 1371970 R identified by match to protein family HMM PF02660; match to protein family HMM TIGR00023; hypothetical protein complement(1371362..1371970) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913706 YP_493947.1 CDS parE NC_007793.1 1372170 1374167 D decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit B 1372170..1374167 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913375 YP_493948.1 CDS parC NC_007793.1 1374167 1376569 D decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit A 1374167..1376569 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913356 YP_493949.1 CDS SAUSA300_1252 NC_007793.1 1376819 1378279 D identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835; amino acid carrier protein 1376819..1378279 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913098 YP_493950.1 CDS glcT NC_007793.1 1378770 1379630 D identified by match to protein family HMM PF00874; match to protein family HMM PF03123; transcription antiterminator 1378770..1379630 Staphylococcus aureus subsp. aureus USA300_FPR3757 3912761 YP_493951.1 CDS SAUSA300_1254 NC_007793.1 1379765 1380973 D identified by match to protein family HMM PF01594; hypothetical protein 1379765..1380973 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913037 YP_493952.1 CDS fmtC NC_007793.1 1381454 1383976 D identified by match to protein family HMM PF04329; match to protein family HMM PF04330; match to protein family HMM PF04331; oxacillin resistance-related FmtC protein 1381454..1383976 Staphylococcus aureus subsp. aureus USA300_FPR3757 3912797 YP_493953.1 CDS msrA NC_007793.1 1384179 1384688 R this stereospecific enzymes reduces the S isomer of methionine sulfoxide while MsrB reduces the R form; provides protection against oxidative stress; methionine sulfoxide reductase A complement(1384179..1384688) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913501 YP_493954.1 CDS msrR NC_007793.1 1384825 1385808 D identified by match to protein family HMM PF03816; match to protein family HMM TIGR00350; peptide methionine sulfoxide reductase regulator MsrR 1384825..1385808 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913303 YP_493955.1 CDS SAUSA300_1258 NC_007793.1 1385896 1386081 R identified by match to protein family HMM PF01361; match to protein family HMM TIGR00013; 4-oxalocrotonate tautomerase complement(1385896..1386081) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914264 YP_493956.1 CDS SAUSA300_1259 NC_007793.1 1386229 1387491 D identified by match to protein family HMM PF00817; ImpB/MucB/SamB family protein 1386229..1387491 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913334 YP_493957.1 CDS SAUSA300_1260 NC_007793.1 1387628 1388719 R catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate; prephenate dehydrogenase complement(1387628..1388719) Staphylococcus aureus subsp. aureus USA300_FPR3757 3912984 YP_493958.1 CDS SAUSA300_1261 NC_007793.1 1388884 1389915 D identified by match to protein family HMM PF05343; putative glutamyl aminopeptidase 1388884..1389915 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914351 YP_493959.1 CDS trpE NC_007793.1 1390407 1391813 D with component II, the glutamine amidotransferase, catalyzes the formation of anthranilate from chorismate and glutamine; anthranilate synthase component I 1390407..1391813 Staphylococcus aureus subsp. aureus USA300_FPR3757 3912999 YP_493960.1 CDS trpG NC_007793.1 1391810 1392376 D identified by match to protein family HMM PF00117; match to protein family HMM TIGR00566; anthranilate synthase component II 1391810..1392376 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913082 YP_493961.1 CDS trpD NC_007793.1 1392382 1393380 D Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate; anthranilate phosphoribosyltransferase 1392382..1393380 Staphylococcus aureus subsp. aureus USA300_FPR3757 3915172 YP_493962.1 CDS trpC NC_007793.1 1393382 1394164 D involved in tryptophan biosynthesis; amino acid biosynthesis; converts 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate to C(1)-(3-indolyl)-glycerol 3-phosphate and carbon dioxide and water; indole-3-glycerol-phosphate synthase 1393382..1394164 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913886 YP_493963.1 CDS trpF NC_007793.1 1394164 1394796 D catalyzes the formation of 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate from N-(5-phospho-beta-D-ribosyl)-anthranilate in tryptophan biosynthesis; N-(5'-phosphoribosyl)anthranilate isomerase 1394164..1394796 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913452 YP_493964.1 CDS trpB NC_007793.1 1394789 1396003 D catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta 1394789..1396003 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913672 YP_493965.1 CDS trpA NC_007793.1 1395996 1396724 D catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis; tryptophan synthase subunit alpha 1395996..1396724 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914738 YP_493966.1 CDS femA NC_007793.1 1397007 1398308 D identified by match to protein family HMM PF02388; methicillin resistance protein FemA 1397007..1398308 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913871 YP_493967.1 CDS femB NC_007793.1 1398327 1399586 D identified by match to protein family HMM PF02388; methicillin resistance protein FemB 1398327..1399586 Staphylococcus aureus subsp. aureus USA300_FPR3757 3912965 YP_493968.1 CDS SAUSA300_1271 NC_007793.1 1400275 1401042 D identified by match to protein family HMM TIGR00099; match to protein family HMM TIGR01484; hydrolase-like protein 1400275..1401042 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913582 YP_493969.1 CDS SAUSA300_1272 NC_007793.1 1401090 1401563 R identified by match to protein family HMM PF04434; hypothetical protein complement(1401090..1401563) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915134 YP_493970.1 CDS opp-2F NC_007793.1 1401687 1402388 R identified by match to protein family HMM PF00005; oligopeptide permease, ATP-binding protein complement(1401687..1402388) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915354 YP_493971.1 CDS SAUSA300_1274 NC_007793.1 1402381 1403154 R identified by match to protein family HMM PF00005; peptide ABC transporter ATP-binding protein complement(1402381..1403154) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913569 YP_493972.1 CDS SAUSA300_1275 NC_007793.1 1403141 1403971 R identified by match to protein family HMM PF00528; peptide ABC transporter permease complement(1403141..1403971) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914237 YP_493973.1 CDS opp-2B NC_007793.1 1403964 1404950 R identified by match to protein family HMM PF00528; oligopeptide permease, channel-forming protein complement(1403964..1404950) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914938 YP_493974.1 CDS SAUSA300_1277 NC_007793.1 1405254 1405598 R hypothetical protein complement(1405254..1405598) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915217 YP_493975.1 CDS pepF NC_007793.1 1405803 1407617 D identified by match to protein family HMM PF01432; match to protein family HMM TIGR00181; oligoendopeptidase F 1405803..1407617 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913482 YP_493976.1 CDS phoU NC_007793.1 1407757 1408398 R identified by match to protein family HMM PF01895; match to protein family HMM TIGR02135; phosphate transport system regulatory protein PhoU complement(1407757..1408398) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913826 YP_493977.1 CDS pstB NC_007793.1 1408405 1409256 R ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation; phosphate transporter ATP-binding protein complement(1408405..1409256) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913134 YP_493978.1 CDS pstA NC_007793.1 1409303 1410220 R identified by match to protein family HMM PF00528; match to protein family HMM TIGR00974; phosphate ABC transporter permease PstA complement(1409303..1410220) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913435 YP_493979.1 CDS pstC NC_007793.1 1410222 1411148 R identified by match to protein family HMM PF00528; match to protein family HMM TIGR02138; phosphate ABC transporter permease PstC complement(1410222..1411148) Staphylococcus aureus subsp. aureus USA300_FPR3757 3912978 YP_493980.1 CDS pstS NC_007793.1 1411339 1412322 R identified by match to protein family HMM PF01547; match to protein family HMM TIGR02136; phosphate ABC transporter phosphate-binding protein PstS complement(1411339..1412322) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913216 YP_493981.1 CDS SAUSA300_1284 NC_007793.1 1413294 1414196 R hypothetical protein complement(1413294..1414196) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913177 YP_493982.1 CDS SAUSA300_1285 NC_007793.1 1414343 1415944 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 1414343..1415944 Staphylococcus aureus subsp. aureus USA300_FPR3757 3912809 YP_493983.1 CDS SAUSA300_1286 NC_007793.1 1416804 1418009 D catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP, in Bacillus, lysine sensitive; regulated by response to starvation.; aspartate kinase 1416804..1418009 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914347 YP_493984.1 CDS asd NC_007793.1 1418073 1419062 D identified by match to protein family HMM PF01118; match to protein family HMM PF02774; match to protein family HMM TIGR01296; aspartate semialdehyde dehydrogenase 1418073..1419062 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913702 YP_493985.1 CDS dapA NC_007793.1 1419064 1419951 D catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase 1419064..1419951 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914419 YP_493986.1 CDS dapB NC_007793.1 1419948 1420670 D catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate reductase 1419948..1420670 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914556 YP_493987.1 CDS dapD NC_007793.1 1420697 1421416 D identified by match to protein family HMM PF00132; tetrahydrodipicolinate acetyltransferase 1420697..1421416 Staphylococcus aureus subsp. aureus USA300_FPR3757 3915377 YP_493988.1 CDS SAUSA300_1291 NC_007793.1 1421559 1422710 D identified by match to protein family HMM PF01546; match to protein family HMM TIGR01891; hippurate hydrolase 1421559..1422710 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914064 YP_493989.1 CDS alr2 NC_007793.1 1422715 1423800 D identified by match to protein family HMM PF00842; match to protein family HMM PF01168; alanine racemase 1422715..1423800 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914746 YP_493990.1 CDS lysA NC_007793.1 1423790 1425055 D identified by match to protein family HMM PF00278; match to protein family HMM PF02784; match to protein family HMM TIGR01048; diaminopimelate decarboxylase 1423790..1425055 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913042 YP_493991.1 CDS SAUSA300_1294 NC_007793.1 1425295 1425696 R hypothetical protein complement(1425295..1425696) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913289 YP_493992.1 CDS SAUSA300_1295 NC_007793.1 1425893 1426093 R identified by match to protein family HMM PF00313; CSD family cold shock protein complement(1425893..1426093) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913646 YP_493993.1 CDS SAUSA300_1296 NC_007793.1 1426264 1426572 R hypothetical protein complement(1426264..1426572) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914993 YP_493994.1 CDS SAUSA300_1297 NC_007793.1 1426735 1427004 D catalyzes the hydrolysis of acylphosphate; acylphosphatase 1426735..1427004 Staphylococcus aureus subsp. aureus USA300_FPR3757 3912924 YP_493995.1 CDS SAUSA300_1298 NC_007793.1 1427023 1427652 D hypothetical protein 1427023..1427652 Staphylococcus aureus subsp. aureus USA300_FPR3757 3915274 YP_493996.1 CDS SAUSA300_1299 NC_007793.1 1427684 1428820 D identified by match to protein family HMM PF05816; putative tellurite resistance protein 1427684..1428820 Staphylococcus aureus subsp. aureus USA300_FPR3757 3912961 YP_493997.1 CDS brnQ NC_007793.1 1429833 1431176 R identified by match to protein family HMM PF05525; match to protein family HMM TIGR00796; branched-chain amino acid transport system II carrier protein complement(1429833..1431176) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914869 YP_493998.1 CDS SAUSA300_1301 NC_007793.1 1431401 1433287 R hypothetical protein complement(1431401..1433287) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913136 YP_493999.1 CDS SAUSA300_1302 NC_007793.1 1433301 1434092 R identified by match to protein family HMM PF07726; match to protein family HMM PF07728; ATPase family protein complement(1433301..1434092) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913051 YP_494000.1 CDS SAUSA300_1303 NC_007793.1 1434273 1434476 R hypothetical protein complement(1434273..1434476) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914385 YP_494001.1 CDS SAUSA300_1304 NC_007793.1 1434505 1435314 R identified by match to protein family HMM PF00903; hypothetical protein complement(1434505..1435314) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914759 YP_494002.1 CDS sucB NC_007793.1 1435894 1437162 R component of 2-oxoglutarate dehydrogenase complex; catalyzes the transfer of succinyl coenzyme A to form succinyl CoA as part of the conversion of 2-oxoglutarate to succinyl-CoA; dihydrolipoamide succinyltransferase complement(1435894..1437162) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913103 YP_494003.1 CDS sucA NC_007793.1 1437176 1439974 R SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide; 2-oxoglutarate dehydrogenase E1 component complement(1437176..1439974) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914958 YP_494004.1 CDS arlS NC_007793.1 1440258 1441613 R identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; sensor histidine kinase protein complement(1440258..1441613) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913274 YP_494005.1 CDS arlR NC_007793.1 1441610 1442269 R identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator complement(1441610..1442269) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914065 YP_494006.1 CDS SAUSA300_1309 NC_007793.1 1443183 1443668 D identified by match to protein family HMM PF01797; IS200 family transposase 1443183..1443668 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914007 YP_494007.1 CDS SAUSA300_1310 NC_007793.1 1443799 1444413 R identified by match to protein family HMM PF01569; hypothetical protein complement(1443799..1444413) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914058 YP_494008.1 CDS murG NC_007793.1 1444430 1445500 R UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase complement(1444430..1445500) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914629 YP_494009.1 CDS SAUSA300_1312 NC_007793.1 1445512 1446021 R identified by match to protein family HMM PF00583; acetyltransferase complement(1445512..1446021) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913838 YP_494010.1 CDS ctpA NC_007793.1 1446421 1447911 R identified by match to protein family HMM PF00595; match to protein family HMM PF01471; match to protein family HMM PF03572; match to protein family HMM TIGR00225; carboxyl-terminal protease complement(1446421..1447911) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915221 YP_494011.1 CDS SAUSA300_1314 NC_007793.1 1448103 1448324 R identified by match to protein family HMM PF06855; hypothetical protein complement(1448103..1448324) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915277 YP_494012.1 CDS crr NC_007793.1 1448324 1448824 R identified by match to protein family HMM PF00358; match to protein family HMM TIGR00830; PTS system, glucose-specific IIA component complement(1448324..1448824) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913535 YP_494013.1 CDS msrB NC_007793.1 1448836 1449264 R this stereospecific enzymes reduces the R isomer of methionine sulfoxide while MsrA reduces the S form; provides protection against oxidative stress; methionine sulfoxide reductase B complement(1448836..1449264) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914272 YP_494014.1 CDS msrA NC_007793.1 1449257 1449790 R this stereospecific enzymes reduces the S isomer of methionine sulfoxide while MsrB reduces the R form; provides protection against oxidative stress; methionine sulfoxide reductase A complement(1449257..1449790) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913340 YP_494015.1 CDS SAUSA300_1318 NC_007793.1 1449876 1450715 R identified by match to protein family HMM PF02645; match to protein family HMM TIGR00762; hypothetical protein complement(1449876..1450715) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914245 YP_494016.1 CDS folA NC_007793.1 1450730 1451209 R identified by match to protein family HMM PF00186; dihydrofolate reductase complement(1450730..1451209) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914467 YP_494017.1 CDS thyA NC_007793.1 1451409 1452365 R ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived; thymidylate synthase complement(1451409..1452365) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915403 YP_494018.1 CDS SAUSA300_1321 NC_007793.1 1452789 1453226 R identified by match to protein family HMM PF06491; hypothetical protein complement(1452789..1453226) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914013 YP_494019.1 CDS SAUSA300_1322 NC_007793.1 1453242 1454366 R identified by match to protein family HMM PF03130; hypothetical protein complement(1453242..1454366) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913208 YP_494020.1 CDS SAUSA300_1323 NC_007793.1 1454404 1454655 R hypothetical protein complement(1454404..1454655) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913528 YP_494021.1 CDS SAUSA300_1324 NC_007793.1 1455106 1455810 D identified by match to protein family HMM PF02592; match to protein family HMM TIGR00697; hypothetical protein 1455106..1455810 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914020 YP_494022.1 CDS SAUSA300_1325 NC_007793.1 1455875 1456006 R hypothetical protein complement(1455875..1456006) Staphylococcus aureus subsp. aureus USA300_FPR3757 3912972 YP_494023.1 CDS SAUSA300_1326 NC_007793.1 1456351 1456752 D putative cell wall enzyme EbsB 1456351..1456752 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914642 YP_494024.1 CDS SAUSA300_1327 NC_007793.1 1456811 1488076 R identified by similarity to GB:AAW37659.1; match to protein family HMM PF01468; match to protein family HMM PF04650; match to protein family HMM PF07554; match to protein family HMM PF07564; match to protein family HMM TIGR01168; cell surface protein complement(1456811..1488076) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913713 YP_494025.1 CDS SAUSA300_1328 NC_007793.1 1488474 1489865 R identified by match to protein family HMM PF07690; putative drug transporter complement(1488474..1489865) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914312 YP_494026.1 CDS SAUSA300_1329 NC_007793.1 1490022 1491344 R identified by match to protein family HMM PF00324; amino acid permease complement(1490022..1491344) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913553 YP_494027.1 CDS ilvA NC_007793.1 1491375 1492415 R catalyzes the formation of 2-oxobutanoate from L-threonine; catabolic; threonine dehydratase complement(1491375..1492415) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913061 YP_494028.1 CDS ald NC_007793.1 1492510 1493628 R identified by match to protein family HMM PF01262; match to protein family HMM PF03949; match to protein family HMM PF05222; match to protein family HMM TIGR00518; alanine dehydrogenase complement(1492510..1493628) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914134 YP_494029.1 CDS SAUSA300_1332 NC_007793.1 1494103 1494981 R identified by match to protein family HMM PF01367; match to protein family HMM PF02739; putative 5'-3' exonuclease complement(1494103..1494981) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914903 YP_494030.1 CDS SAUSA300_1333 NC_007793.1 1495001 1498441 R identified by match to protein family HMM PF00350; match to protein family HMM PF01926; hypothetical protein complement(1495001..1498441) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914206 YP_494031.1 CDS SAUSA300_1334 NC_007793.1 1498745 1500085 D identified by match to protein family HMM PF03413; match to protein family HMM PF03929; hypothetical protein 1498745..1500085 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913297 YP_494032.1 CDS SAUSA300_1335 NC_007793.1 1500291 1500623 R hypothetical protein complement(1500291..1500623) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913515 YP_494033.1 CDS SAUSA300_1336 NC_007793.1 1500707 1501852 R identified by match to protein family HMM PF01170; hypothetical protein complement(1500707..1501852) Staphylococcus aureus subsp. aureus USA300_FPR3757 3912787 YP_494034.1 CDS SAUSA300_1337 NC_007793.1 1502503 1502847 R identified by match to protein family HMM PF05103; hypothetical protein complement(1502503..1502847) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913581 YP_494035.1 CDS SAUSA300_1338 NC_007793.1 1502861 1503424 R identified by match to protein family HMM PF06908; hypothetical protein complement(1502861..1503424) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913380 YP_494036.1 CDS SAUSA300_1339 NC_007793.1 1503417 1503767 R hypothetical protein complement(1503417..1503767) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913309 YP_494037.1 CDS recU NC_007793.1 1504307 1504933 D functions in homologous recombination, DNA repair, and chromosome segregation; binds preferentially to three- and four-stranded DNA intermediates; introduces specific nick sites in four-stranded DNA substrates; functions similarly to Escherichia coli RuvC; Holliday junction-specific endonuclease 1504307..1504933 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914771 YP_494038.1 CDS pbp2 NC_007793.1 1504930 1507113 D identified by match to protein family HMM PF00905; match to protein family HMM PF00912; penicillin binding protein 2 1504930..1507113 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914620 YP_494039.1 CDS SAUSA300_1342 NC_007793.1 1507679 1508020 R hypothetical protein complement(1507679..1508020) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913353 YP_494040.1 CDS nth NC_007793.1 1508025 1508684 R identified by match to protein family HMM PF00633; match to protein family HMM PF00730; match to protein family HMM TIGR01083; endonuclease III complement(1508025..1508684) Staphylococcus aureus subsp. aureus USA300_FPR3757 3912944 YP_494041.1 CDS SAUSA300_1344 NC_007793.1 1508674 1509360 R identified by match to protein family HMM PF04271; match to protein family HMM TIGR01446; putative DNA replication protein DnaD complement(1508674..1509360) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914184 YP_494042.1 CDS asnC NC_007793.1 1509688 1510980 R catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; asparaginyl-tRNA synthetase complement(1509688..1510980) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914387 YP_494043.1 CDS SAUSA300_1346 NC_007793.1 1511302 1513995 R identified by match to protein family HMM PF00929; match to protein family HMM TIGR00573; match to protein family HMM TIGR01407; DnaQ family exonuclease/DinG family helicase complement(1511302..1513995) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913942 YP_494044.1 CDS birA NC_007793.1 1514019 1514990 R identified by match to protein family HMM PF03099; match to protein family HMM TIGR00121; BirA bifunctional protein complement(1514019..1514990) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913863 YP_494045.2 CDS SAUSA300_1348 NC_007793.1 1514977 1516179 R catalyzes the addition and repair of the 3'-terminal CCA sequence in tRNA; these proteins belong to the CCA-adding enzyme subfamily 2 which does not have phosphohydrolase activity; tRNA CCA-pyrophosphorylase complement(1514977..1516179) Staphylococcus aureus subsp. aureus USA300_FPR3757 3912993 YP_494046.1 CDS SAUSA300_1349 NC_007793.1 1516184 1517326 R identified by match to protein family HMM PF00534; glycosyl transferase, group 1 family protein complement(1516184..1517326) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914894 YP_494047.1 CDS SAUSA300_1350 NC_007793.1 1517567 1517884 R identified by match to protein family HMM PF03819; hypothetical protein complement(1517567..1517884) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913493 YP_494048.1 CDS SAUSA300_1351 NC_007793.1 1518221 1518901 R identified by match to protein family HMM PF04298; hypothetical protein complement(1518221..1518901) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914495 YP_494049.1 CDS SAUSA300_1352 NC_007793.1 1518973 1519560 R identified by match to protein family HMM PF07187; hypothetical protein complement(1518973..1519560) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913017 YP_494050.1 CDS SAUSA300_1353 NC_007793.1 1519550 1520125 R hypothetical protein complement(1519550..1520125) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914801 YP_494051.1 CDS SAUSA300_1354 NC_007793.1 1520139 1521242 R identified by match to protein family HMM PF07719; hypothetical protein complement(1520139..1521242) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914400 YP_494052.1 CDS aroA NC_007793.1 1521390 1522688 R catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis; 3-phosphoshikimate 1-carboxyvinyltransferase complement(1521390..1522688) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914972 YP_494053.1 CDS aroB NC_007793.1 1522698 1523762 R catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis; 3-dehydroquinate synthase complement(1522698..1523762) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914684 YP_494054.1 CDS aroC NC_007793.1 1523788 1524954 R catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase complement(1523788..1524954) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914941 YP_494055.1 CDS ndk NC_007793.1 1525749 1526180 R catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate; nucleoside diphosphate kinase complement(1525749..1526180) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913781 YP_494056.1 CDS SAUSA300_1359 NC_007793.1 1526290 1527234 R identified by match to protein family HMM PF00348; polyprenyl synthetase complement(1526290..1527234) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913985 YP_494057.1 CDS ubiE NC_007793.1 1527251 1527853 R Catalyzes the carbon methylation reaction in the biosynthesis of ubiquinone; ubiquinone/menaquinone biosynthesis methyltransferase complement(1527251..1527853) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914097 YP_494058.1 CDS SAUSA300_1361 NC_007793.1 1527979 1528551 R hypothetical protein complement(1527979..1528551) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913588 YP_494059.1 CDS hup NC_007793.1 1528982 1529254 R identified by match to protein family HMM PF00216; DNA-binding protein HU complement(1528982..1529254) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915096 YP_494060.1 CDS gpsA NC_007793.1 1529425 1530423 R catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase complement(1529425..1530423) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914986 YP_494061.1 CDS engA NC_007793.1 1530440 1531750 R EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA complement(1530440..1531750) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913152 YP_494062.1 CDS rpsA NC_007793.1 1531972 1533147 R in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 complement(1531972..1533147) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913994 YP_494063.1 CDS SAUSA300_1366 NC_007793.1 1533712 1533828 R hypothetical protein complement(1533712..1533828) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914261 YP_494064.2 CDS cmk NC_007793.1 1533859 1534518 R Catalyzes the formation of (d)CDP from ATP and (d)CMP; cytidylate kinase complement(1533859..1534518) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913498 YP_494065.1 CDS ansA NC_007793.1 1534595 1535563 D identified by match to protein family HMM PF00710; L-asparaginase 1534595..1535563 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914781 YP_494066.1 CDS SAUSA300_1369 NC_007793.1 1535678 1536664 R identified by match to protein family HMM PF00070; match to protein family HMM PF07992; pyridine nucleotide-disulfide oxidoreductase complement(1535678..1536664) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914479 YP_494067.1 CDS ebpS NC_007793.1 1537066 1538526 R identified by match to protein family HMM PF01476; cell surface elastin binding protein complement(1537066..1538526) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913412 YP_494068.1 CDS recQ NC_007793.1 1538679 1540058 R identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF04851; match to protein family HMM TIGR00614; ATP-dependent DNA helicase RecQ complement(1538679..1540058) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913258 YP_494069.1 CDS SAUSA300_1372 NC_007793.1 1540048 1541001 R hypothetical protein complement(1540048..1541001) Staphylococcus aureus subsp. aureus USA300_FPR3757 3912843 YP_494070.1 CDS SAUSA300_1373 NC_007793.1 1541133 1541357 D ferredoxin 1541133..1541357 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913532 YP_494071.1 CDS SAUSA300_1374 NC_007793.1 1541463 1542008 R hypothetical protein complement(1541463..1542008) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914651 YP_494072.1 CDS SAUSA300_1375 NC_007793.1 1542287 1542406 R hypothetical protein complement(1542287..1542406) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915224 YP_494073.1 CDS SAUSA300_1376 NC_007793.1 1542605 1543519 R identified by match to protein family HMM PF07901; putative lipoprotein complement(1542605..1543519) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914243 YP_494074.1 CDS SAUSA300_1377 NC_007793.1 1543534 1543740 R hypothetical protein complement(1543534..1543740) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915162 YP_494075.1 CDS SAUSA300_1378 NC_007793.1 1543733 1544611 R identified by match to protein family HMM PF07901; hypothetical protein complement(1543733..1544611) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915401 YP_494076.1 CDS SAUSA300_1379 NC_007793.1 1544728 1545645 R identified by match to protein family HMM PF07901; putative lipoprotein complement(1544728..1545645) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913884 YP_494077.1 CDS SAUSA300_1380 NC_007793.1 1545736 1545921 R hypothetical protein complement(1545736..1545921) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914961 YP_494078.1 CDS lukF-PV NC_007793.1 1546170 1547147 R identified by match to protein family HMM PF07968; match to protein family HMM TIGR01002; Panton-Valentine leukocidin, LukF-PV complement(1546170..1547147) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913285 YP_494079.1 CDS lukS-PV NC_007793.1 1547149 1548087 R identified by match to protein family HMM PF07968; match to protein family HMM TIGR01002; Panton-Valentine leukocidin, LukS-PV complement(1547149..1548087) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913710 YP_494080.1 CDS SAUSA300_1383 NC_007793.1 1548477 1549931 R identical to Staphylococcus aureus temperate phage phiSLT; identified by match to protein family HMM PF01520; match to protein family HMM PF05257; phiSLT ORF484-like protein, lysin complement(1548477..1549931) Staphylococcus aureus subsp. aureus USA300_FPR3757 3912912 YP_494081.1 CDS SAUSA300_1384 NC_007793.1 1549942 1550244 R identical to holin in Staphylococcus aureus temperate phage phiSLT; identified by match to protein family HMM PF04688; match to protein family HMM TIGR01592; phiSLT ORF100b-like protein, holin complement(1549942..1550244) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913391 YP_494082.1 CDS SAUSA300_1385 NC_007793.1 1550380 1550679 R phiSLT ORF 99-like protein complement(1550380..1550679) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914362 YP_494083.1 CDS SAUSA300_1386 NC_007793.1 1550725 1550889 R identified by match to protein family HMM TIGR01669; phiETA ORF59-like protein complement(1550725..1550889) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913387 YP_494084.1 CDS SAUSA300_1387 NC_007793.1 1550882 1551271 R phiSLT ORF129-like protein complement(1550882..1551271) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914930 YP_494085.1 CDS SAUSA300_1388 NC_007793.1 1551271 1552737 R phiSLT ORF488-like protein complement(1551271..1552737) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913190 YP_494086.1 CDS SAUSA300_1389 NC_007793.1 1552737 1554647 R phiSLT ORF636-like protein complement(1552737..1554647) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914024 YP_494087.1 CDS SAUSA300_1390 NC_007793.1 1554663 1554953 R phiSLT ORF96-like protein complement(1554663..1554953) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914469 YP_494088.1 CDS SAUSA300_1391 NC_007793.1 1554953 1556536 R identified by match to protein family HMM PF06605; phiSLT ORF527-like protein complement(1554953..1556536) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915023 YP_494089.1 CDS SAUSA300_1392 NC_007793.1 1556545 1557369 R identified by match to protein family HMM PF06997; phiSLT ORF191-like protein complement(1556545..1557369) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913489 YP_494090.1 CDS SAUSA300_1393 NC_007793.1 1557369 1563569 R identified by match to protein family HMM PF01464; match to protein family HMM PF01551; match to protein family HMM TIGR01760; phiSLT ORF2067-like protein, phage tail tape measure protein complement(1557369..1563569) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915388 YP_494091.1 CDS SAUSA300_1394 NC_007793.1 1563583 1563741 R hypothetical protein complement(1563583..1563741) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914864 YP_494092.1 CDS SAUSA300_1395 NC_007793.1 1563783 1564133 R phiSLT ORF116b-like protein complement(1563783..1564133) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913765 YP_494093.1 CDS SAUSA300_1396 NC_007793.1 1564191 1564646 R identified by match to protein family HMM PF02368; phiSLT ORF151-like protein, major tail protein complement(1564191..1564646) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914271 YP_494094.1 CDS SAUSA300_1397 NC_007793.1 1564738 1565379 R identified by match to protein family HMM PF04630; match to protein family HMM TIGR01603; phiSLT ORF213-like protein, major tail protein complement(1564738..1565379) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914713 YP_494095.1 CDS SAUSA300_1398 NC_007793.1 1565810 1566211 R phiSLT ORF123-like protein complement(1565810..1566211) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913954 YP_494096.1 CDS SAUSA300_1399 NC_007793.1 1566208 1566540 R phiSLT ORF110-like protein complement(1566208..1566540) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913812 YP_494097.1 CDS SAUSA300_1400 NC_007793.1 1566552 1566830 R identified by match to protein family HMM TIGR01560; phiSLT ORF92-like protein complement(1566552..1566830) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915257 YP_494098.1 CDS SAUSA300_1401 NC_007793.1 1566899 1568062 R identified by match to protein family HMM PF05065; phiSLT ORF387-like protein complement(1566899..1568062) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913015 YP_494099.1 CDS SAUSA300_1402 NC_007793.1 1568074 1568847 R identified by match to protein family HMM PF00574; phiSLT ORF257-like protein prophage protease complement(1568074..1568847) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913936 YP_494100.1 CDS SAUSA300_1403 NC_007793.1 1568831 1570069 R identified by match to protein family HMM PF04860; match to protein family HMM TIGR01537; phiSLT ORF412-like protein, portal protein complement(1568831..1570069) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914921 YP_494101.1 CDS SAUSA300_1404 NC_007793.1 1570074 1571765 R identified by match to protein family HMM PF03354; phiSLT ORF 563-like protein, terminase, large subunit complement(1570074..1571765) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913877 YP_494102.1 CDS SAUSA300_1405 NC_007793.1 1571755 1572060 R identified by match to protein family HMM PF05119; phiSLT ORF 101-like protein, terminase, small subunit complement(1571755..1572060) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914791 YP_494103.1 CDS SAUSA300_1406 NC_007793.1 1572187 1572501 R identified by match to protein family HMM PF01844; phiSLT ORF 104b-like protein complement(1572187..1572501) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913268 YP_494104.1 CDS SAUSA300_1407 NC_007793.1 1572658 1573095 R identified by match to protein family HMM TIGR01636; phi SLT ORF 145-like protein, phage transcriptional regulator complement(1572658..1573095) Staphylococcus aureus subsp. aureus USA300_FPR3757 3912772 YP_494105.1 CDS SAUSA300_1408 NC_007793.1 1573108 1574379 R identified by match to protein family HMM PF00176; phage helicase complement(1573108..1574379) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915097 YP_494106.1 CDS SAUSA300_1409 NC_007793.1 1574456 1574746 R hypothetical protein complement(1574456..1574746) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913959 YP_494107.1 CDS SAUSA300_1410 NC_007793.1 1575087 1577534 R identified by match to protein family HMM PF05272; virulence-associated protein E complement(1575087..1577534) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914804 YP_494108.1 CDS SAUSA300_1411 NC_007793.1 1577822 1578022 R identified by match to protein family HMM PF07438; phiSLT ORF66-like protein complement(1577822..1578022) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915068 YP_494109.1 CDS SAUSA300_1412 NC_007793.1 1578090 1578242 R similar to transcriptional activator rinB; identified by match to protein family HMM PF06116; phiSLT ORF 50-like protein complement(1578090..1578242) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914959 YP_494110.1 CDS SAUSA300_1413 NC_007793.1 1578239 1578625 R hypothetical protein complement(1578239..1578625) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913987 YP_494111.1 CDS SAUSA300_1414 NC_007793.1 1578618 1578854 R phiSLT ORF 78B-like protein complement(1578618..1578854) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914992 YP_494112.1 CDS SAUSA300_1415 NC_007793.1 1578847 1579050 R phiSLT ORF 77-like protein complement(1578847..1579050) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913911 YP_494113.1 CDS SAUSA300_1416 NC_007793.1 1579047 1579253 R identified by match to protein family HMM PF07129; phiSLT ORF 81b-like protein complement(1579047..1579253) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913169 YP_494114.1 CDS SAUSA300_1417 NC_007793.1 1579290 1579826 R phiSLT ORF 175-like protein complement(1579290..1579826) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913324 YP_494115.1 CDS SAUSA300_1418 NC_007793.1 1579819 1580067 R identified by match to protein family HMM PF06260; phiSLT ORF 82-like protein complement(1579819..1580067) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913763 YP_494116.1 CDS SAUSA300_1419 NC_007793.1 1580082 1580324 R identified by match to protein family HMM PF06194; phiSLT ORF80-like protein complement(1580082..1580324) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915143 YP_494117.1 CDS SAUSA300_1420 NC_007793.1 1580542 1580799 R hypothetical protein complement(1580542..1580799) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914141 YP_494118.1 CDS SAUSA300_1421 NC_007793.1 1580799 1581200 R identified by match to protein family HMM PF07768; phiSLT ORF122-like protein, DNA polymerase complement(1580799..1581200) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913228 YP_494119.1 CDS SAUSA300_1422 NC_007793.1 1581200 1581385 R phiSLT ORF65-like protein complement(1581200..1581385) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914364 YP_494120.1 CDS polA NC_007793.1 1581398 1583350 R identified by match to protein family HMM PF00476; phage related DNA polymerase family A complement(1581398..1583350) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914044 YP_494121.1 CDS SAUSA300_1424 NC_007793.1 1583418 1583975 R hypothetical protein complement(1583418..1583975) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913522 YP_494122.1 CDS SAUSA300_1425 NC_007793.1 1584001 1585167 R hypothetical protein complement(1584001..1585167) Staphylococcus aureus subsp. aureus USA300_FPR3757 3912923 YP_494123.1 CDS SAUSA300_1426 NC_007793.1 1585164 1585526 R hypothetical protein complement(1585164..1585526) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915009 YP_494124.1 CDS SAUSA300_1427 NC_007793.1 1585540 1585800 R identified by match to protein family HMM PF06531; phiSLT ORF86-like protein complement(1585540..1585800) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914056 YP_494125.1 CDS SAUSA300_1428 NC_007793.1 1586100 1586417 R hypothetical protein complement(1586100..1586417) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915114 YP_494126.1 CDS SAUSA300_1429 NC_007793.1 1586510 1586605 R phiSLT ORF53-like protein complement(1586510..1586605) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913699 YP_494127.1 CDS SAUSA300_1430 NC_007793.1 1586683 1586946 R phiSLT ORF 87-like protein DNA-binding protein complement(1586683..1586946) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913853 YP_494128.1 CDS SAUSA300_1431 NC_007793.1 1586971 1587186 R phiSLT ORF71-like protein complement(1586971..1587186) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914196 YP_494129.1 CDS SAUSA300_1432 NC_007793.1 1587233 1587472 D phiSLT ORF78-like protein 1587233..1587472 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914540 YP_494130.1 CDS SAUSA300_1433 NC_007793.1 1587729 1587929 R identified by match to protein family HMM PF01381; putative phage regulatory protein complement(1587729..1587929) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915285 YP_494131.1 CDS SAUSA300_1434 NC_007793.1 1588081 1588410 D identified by match to protein family HMM PF01381; phiSLT ORF104a-like protein, repressor 1588081..1588410 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913727 YP_494132.1 CDS SAUSA300_1435 NC_007793.1 1588423 1588884 D identified by match to protein family HMM PF06114; phiSLT ORF153-like protein 1588423..1588884 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913806 YP_494133.1 CDS SAUSA300_1436 NC_007793.1 1588902 1589336 D phiSLT ORF144-like protein lipoprotein 1588902..1589336 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913869 YP_494134.1 CDS SAUSA300_1437 NC_007793.1 1589993 1590607 R phiSLT ORF204-like protein complement(1589993..1590607) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913418 YP_494135.1 CDS SAUSA300_1438 NC_007793.1 1590733 1591938 D identified by match to protein family HMM PF00589; phiSLT ORF401-like protein, integrase 1590733..1591938 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913265 YP_494136.1 CDS SAUSA300_1440 NC_007793.1 1594000 1594869 R identified by match to protein family HMM PF07901; hypothetical protein complement(1594000..1594869) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914536 YP_494137.1 CDS srrB NC_007793.1 1595174 1596940 R identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; respiratory response protein, SrrB complement(1595174..1596940) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913444 YP_494138.1 CDS srrA NC_007793.1 1596906 1597631 R identified by match to protein family HMM PF00072; match to protein family HMM PF00486; respiratory response protein, SrrA complement(1596906..1597631) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914401 YP_494139.1 CDS rluB NC_007793.1 1597764 1598501 R identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093; ribosomal large subunit pseudouridine synthase B complement(1597764..1598501) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915008 YP_494140.1 CDS scpB NC_007793.1 1598494 1599036 R identified by match to protein family HMM PF04079; match to protein family HMM TIGR00281; segregation and condensation protein B complement(1598494..1599036) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914916 YP_494141.1 CDS scpA NC_007793.1 1599029 1599760 R identified by match to protein family HMM PF02616; hypothetical protein complement(1599029..1599760) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914689 YP_494142.1 CDS SAUSA300_1446 NC_007793.1 1599852 1600358 D identified by match to protein family HMM PF03745; hypothetical protein 1599852..1600358 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913640 YP_494143.1 CDS xerD NC_007793.1 1600436 1601323 R identified by match to protein family HMM PF00589; match to protein family HMM PF02899; match to protein family HMM TIGR02225; tyrosine recombinase XerD complement(1600436..1601323) Staphylococcus aureus subsp. aureus USA300_FPR3757 3912918 YP_494144.1 CDS SAUSA300_1448 NC_007793.1 1601372 1601821 R identified by match to protein family HMM PF01475; FUR family transcriptional regulator complement(1601372..1601821) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914025 YP_494145.1 CDS SAUSA300_1449 NC_007793.1 1601926 1602468 R identified by match to protein family HMM PF00293; MutT/nudix family protein complement(1601926..1602468) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914039 YP_494146.1 CDS SAUSA300_1450 NC_007793.1 1602550 1603458 D identified by match to protein family HMM PF00248; aldo/keto reductase family oxidoreductase 1602550..1603458 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913460 YP_494147.1 CDS SAUSA300_1451 NC_007793.1 1603938 1604693 R identified by match to protein family HMM PF00106; short chain dehydrogenase/reductase family oxidoreductase complement(1603938..1604693) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914150 YP_494148.1 CDS proC NC_007793.1 1604865 1605650 D identified by match to protein family HMM PF03807; match to protein family HMM TIGR00112; pyrroline-5-carboxylate reductase 1604865..1605650 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914537 YP_494149.1 CDS SAUSA300_1453 NC_007793.1 1605755 1606675 R identified by match to protein family HMM TIGR02651; ribonuclease Z complement(1605755..1606675) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914426 YP_494150.1 CDS zwf NC_007793.1 1606988 1608472 D catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate; glucose-6-phosphate 1-dehydrogenase 1606988..1608472 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914737 YP_494151.1 CDS SAUSA300_1455 NC_007793.1 1608675 1609568 D identified by match to protein family HMM PF00165; match to protein family HMM PF06445; AraC family transcriptional regulator 1608675..1609568 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913920 YP_494152.1 CDS SAUSA300_1456 NC_007793.1 1609651 1611300 R identified by match to protein family HMM PF00128; alpha-D-1,4-glucosidase complement(1609651..1611300) Staphylococcus aureus subsp. aureus USA300_FPR3757 3912811 YP_494153.1 CDS malR NC_007793.1 1611316 1612335 R identified by match to protein family HMM PF00356; match to protein family HMM PF00532; maltose operon transcriptional repressor complement(1611316..1612335) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913516 YP_494154.1 CDS SAUSA300_1458 NC_007793.1 1612529 1612900 R identified by match to protein family HMM PF00903; glyoxalase family protein complement(1612529..1612900) Staphylococcus aureus subsp. aureus USA300_FPR3757 3912929 YP_494155.1 CDS gnd NC_007793.1 1613119 1614525 R catalyzes the formation of D-ribulose 5-phosphate from 6-phospho-D-gluconate; 6-phosphogluconate dehydrogenase complement(1613119..1614525) Staphylococcus aureus subsp. aureus USA300_FPR3757 3912771 YP_494156.1 CDS SAUSA300_1460 NC_007793.1 1614593 1615726 R identified by match to protein family HMM PF01546; match to protein family HMM PF05343; match to protein family HMM PF07687; match to protein family HMM TIGR01883; M20/M25/M40 family peptidase complement(1614593..1615726) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914953 YP_494157.1 CDS SAUSA300_1461 NC_007793.1 1615989 1616168 D hypothetical protein 1615989..1616168 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913989 YP_494158.1 CDS SAUSA300_1462 NC_007793.1 1616295 1617275 R identified by match to protein family HMM PF06081; hypothetical protein complement(1616295..1617275) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915289 YP_494159.1 CDS SAUSA300_1463 NC_007793.1 1617289 1617726 R identified by match to protein family HMM PF06491; hypothetical protein complement(1617289..1617726) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915352 YP_494160.1 CDS SAUSA300_1464 NC_007793.1 1618077 1619351 R identified by match to protein family HMM PF00198; match to protein family HMM PF00364; match to protein family HMM PF02817; 2-oxoisovalerate dehydrogenase, E2 component, dihydrolipoamide acetyltransferase complement(1618077..1619351) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913771 YP_494161.1 CDS SAUSA300_1465 NC_007793.1 1619364 1620347 R identified by match to protein family HMM PF02779; match to protein family HMM PF02780; 2-oxoisovalerate dehydrogenase, E1 component, beta subunit complement(1619364..1620347) Staphylococcus aureus subsp. aureus USA300_FPR3757 3912989 YP_494162.1 CDS SAUSA300_1466 NC_007793.1 1620347 1621339 R identified by match to protein family HMM PF00676; 2-oxoisovalerate dehydrogenase, E1 component, alpha subunit complement(1620347..1621339) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913598 YP_494163.1 CDS lpdA NC_007793.1 1621355 1622776 R identified by match to protein family HMM PF00070; match to protein family HMM PF01134; match to protein family HMM PF02852; match to protein family HMM PF07992; match to protein family HMM TIGR01350; dihydrolipoamide dehydrogenase complement(1621355..1622776) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913916 YP_494164.1 CDS recN NC_007793.1 1622927 1624606 R identified by match to protein family HMM PF02463; match to protein family HMM TIGR00634; DNA repair protein RecN complement(1622927..1624606) Staphylococcus aureus subsp. aureus USA300_FPR3757 3912848 YP_494165.1 CDS argR NC_007793.1 1624622 1625074 R regulates arginine biosynthesis when complexed with arginine by binding at site that overlap the promotors of the arginine biosynthesis genes; arginine repressor complement(1624622..1625074) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913347 YP_494166.1 CDS SAUSA300_1470 NC_007793.1 1625506 1626387 R identified by match to protein family HMM PF00348; geranyltranstransferase complement(1625506..1626387) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913519 YP_494167.1 CDS xseB NC_007793.1 1626365 1626595 R catalyzes the bidirectional exonucleolytic cleavage of DNA; exodeoxyribonuclease VII small subunit complement(1626365..1626595) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913852 YP_494168.1 CDS xseA NC_007793.1 1626588 1627925 R bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides; exodeoxyribonuclease VII large subunit complement(1626588..1627925) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915076 YP_494169.1 CDS nusB NC_007793.1 1627942 1628331 R Regulates rRNA biosynthesis by transcriptional antitermination; transcription antitermination protein NusB complement(1627942..1628331) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914162 YP_494170.1 CDS SAUSA300_1474 NC_007793.1 1628391 1628753 R identified by match to protein family HMM PF03780; hypothetical protein complement(1628391..1628753) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913101 YP_494171.1 CDS accC NC_007793.1 1628768 1630123 R an AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase, an enzyme that catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism; acetyl-CoA carboxylase biotin carboxylase subunit complement(1628768..1630123) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913088 YP_494172.1 CDS accB NC_007793.1 1630123 1630587 R identified by match to protein family HMM PF00364; match to protein family HMM TIGR00531; acetyl-CoA carboxylase, biotin carboxyl carrier protein complement(1630123..1630587) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914268 YP_494173.1 CDS SAUSA300_1478 NC_007793.1 1632071 1632427 R putative lipoprotein complement(1632071..1632427) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913471 YP_494174.1 CDS SAUSA300_1479 NC_007793.1 1632483 1633073 R hypothetical protein complement(1632483..1633073) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913921 YP_494175.1 CDS SAUSA300_1480 NC_007793.1 1633080 1634126 R identified by match to protein family HMM PF05257; putative traG membrane protein complement(1633080..1634126) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913242 YP_494176.1 CDS SAUSA300_1481 NC_007793.1 1634116 1635963 R hypothetical protein complement(1634116..1635963) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915222 YP_494177.1 CDS SAUSA300_1482 NC_007793.1 1635968 1637326 R identified by match to protein family HMM PF01580; FtsK/SpoIIIE family protein complement(1635968..1637326) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914753 YP_494178.1 CDS SAUSA300_1483 NC_007793.1 1637380 1639875 R hypothetical protein complement(1637380..1639875) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914621 YP_494179.1 CDS SAUSA300_1484 NC_007793.1 1639910 1640293 R hypothetical protein complement(1639910..1640293) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913369 YP_494180.1 CDS SAUSA300_1485 NC_007793.1 1640305 1640565 R hypothetical protein complement(1640305..1640565) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913693 YP_494181.1 CDS SAUSA300_1486 NC_007793.1 1640570 1641625 R hypothetical protein complement(1640570..1641625) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914492 YP_494182.1 CDS SAUSA300_1487 NC_007793.1 1641686 1642777 R identified by match to protein family HMM PF02486; replication initiation factor family protein complement(1641686..1642777) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914382 YP_494183.1 CDS SAUSA300_1488 NC_007793.1 1642952 1643254 R hypothetical protein complement(1642952..1643254) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915189 YP_494184.1 CDS SAUSA300_1489 NC_007793.1 1643268 1643588 R hypothetical protein complement(1643268..1643588) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914376 YP_494185.1 CDS efp NC_007793.1 1644418 1644975 R Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P complement(1644418..1644975) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913997 YP_494186.1 CDS SAUSA300_1491 NC_007793.1 1645001 1646062 R identified by match to protein family HMM PF00557; proline dipeptidase complement(1645001..1646062) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913040 YP_494187.1 CDS SAUSA300_1492 NC_007793.1 1646167 1646748 D hypothetical protein 1646167..1646748 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914810 YP_494188.1 CDS SAUSA300_1493 NC_007793.1 1646762 1646980 D hypothetical protein 1646762..1646980 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914393 YP_494189.1 CDS SAUSA300_1494 NC_007793.1 1647044 1647874 R identified by match to protein family HMM PF03099; hypothetical protein complement(1647044..1647874) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914729 YP_494190.1 CDS SAUSA300_1495 NC_007793.1 1648032 1648418 D identified by match to protein family HMM PF00581; hypothetical protein 1648032..1648418 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913930 YP_494191.1 CDS SAUSA300_1496 NC_007793.1 1648783 1650255 R acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 1 to form the P protein; glycine dehydrogenase subunit 2 complement(1648783..1650255) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913110 YP_494192.1 CDS SAUSA300_1497 NC_007793.1 1650248 1651594 R acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 2 to form the P protein; glycine dehydrogenase subunit 1 complement(1650248..1651594) Staphylococcus aureus subsp. aureus USA300_FPR3757 3912822 YP_494193.1 CDS gcvT NC_007793.1 1651614 1652705 R catalyzes the transfer of a methylene carbon from the methylamine-loaded GcvH protein to tetrahydrofolate, causing the release of ammonia and the generation of reduced GcvH protein; glycine cleavage system aminomethyltransferase T complement(1651614..1652705) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913255 YP_494194.1 CDS aroK NC_007793.1 1652864 1653388 R identified by match to protein family HMM PF01202; shikimate kinase complement(1652864..1653388) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913888 YP_494195.1 CDS SAUSA300_1500 NC_007793.1 1653621 1654118 R identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532; hypothetical protein complement(1653621..1654118) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913696 YP_494196.1 CDS SAUSA300_1501 NC_007793.1 1654322 1654768 R identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532; hypothetical protein complement(1654322..1654768) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914339 YP_494197.1 CDS SAUSA300_1502 NC_007793.1 1654746 1655057 R identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532; putative competence protein ComGC complement(1654746..1655057) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915081 YP_494198.1 CDS SAUSA300_1503 NC_007793.1 1655071 1656141 R identified by match to protein family HMM PF00482; putative competence protein ComGB complement(1655071..1656141) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914422 YP_494199.1 CDS SAUSA300_1504 NC_007793.1 1656113 1657087 R identified by match to protein family HMM PF00437; putative competence protein ComGA complement(1656113..1657087) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915372 YP_494200.1 CDS SAUSA300_1505 NC_007793.1 1657139 1657762 R identified by match to protein family HMM PF00753; hypothetical protein complement(1657139..1657762) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914939 YP_494201.1 CDS SAUSA300_1506 NC_007793.1 1657759 1658088 R identified by match to protein family HMM PF01910; match to protein family HMM TIGR00106; hypothetical protein complement(1657759..1658088) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913479 YP_494202.1 CDS glk NC_007793.1 1658088 1659074 R identified by match to protein family HMM PF00480; match to protein family HMM TIGR00744; glucokinase complement(1658088..1659074) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914834 YP_494203.1 CDS SAUSA300_1508 NC_007793.1 1659071 1659274 R identified by match to protein family HMM PF06014; hypothetical protein complement(1659071..1659274) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913241 YP_494204.1 CDS SAUSA300_1509 NC_007793.1 1659255 1660718 R identified by match to protein family HMM PF01694; match to protein family HMM PF07719; rhomboid family peptidase complement(1659255..1660718) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913394 YP_494205.1 CDS SAUSA300_1510 NC_007793.1 1660730 1661269 R identified by match to protein family HMM PF01812; match to protein family HMM TIGR02727; 5-formyltetrahydrofolate cyclo-ligase complement(1660730..1661269) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913840 YP_494206.1 CDS rpmG NC_007793.1 1661478 1661627 R in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif; 50S ribosomal protein L33 complement(1661478..1661627) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913179 YP_494207.1 CDS pbp3 NC_007793.1 1661740 1663815 R identified by match to protein family HMM PF00905; match to protein family HMM PF03717; penicillin-binding protein 3 complement(1661740..1663815) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915175 YP_494208.1 CDS SAUSA300_1513 NC_007793.1 1663936 1664535 R identified by match to protein family HMM PF00081; match to protein family HMM PF02777; Fe/Mn family superoxide dismutase complement(1663936..1664535) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915273 YP_494209.1 CDS fur NC_007793.1 1664812 1665222 R identified by match to protein family HMM PF01475; ferric uptake regulation protein complement(1664812..1665222) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913574 YP_494210.1 CDS SAUSA300_1515 NC_007793.1 1665209 1666072 R identified by match to protein family HMM PF00950; match to protein family HMM PF01032; ABC transporter permease complement(1665209..1666072) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913962 YP_494211.1 CDS SAUSA300_1516 NC_007793.1 1666114 1666899 R identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein complement(1666114..1666899) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914098 YP_494212.1 CDS SAUSA300_1517 NC_007793.1 1667025 1667915 R Assists in DNA repair by cleaving phosphodiester bonds at apurinic or apyrimidinic sties to produce new 5' ends that are base-free deoxyribose 5-phosphate residues; endonuclease IV complement(1667025..1667915) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915387 YP_494213.1 CDS SAUSA300_1518 NC_007793.1 1667925 1669271 R identified by match to protein family HMM PF00270; match to protein family HMM PF00271; DEAD-box ATP dependent DNA helicase complement(1667925..1669271) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914764 YP_494214.1 CDS SAUSA300_1519 NC_007793.1 1669385 1670485 R identified by match to protein family HMM PF01784; match to protein family HMM TIGR00486; hypothetical protein complement(1669385..1670485) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914308 YP_494215.1 CDS SAUSA300_1520 NC_007793.1 1670488 1671165 R identified by match to protein family HMM PF04816; hypothetical protein complement(1670488..1671165) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913357 YP_494216.1 CDS rpoD NC_007793.1 1671296 1672402 R sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; primary sigma factor of bacterium; RNA polymerase sigma factor RpoD complement(1671296..1672402) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913172 YP_494217.1 CDS dnaG NC_007793.1 1672626 1674425 R identified by match to protein family HMM PF01751; match to protein family HMM PF01807; match to protein family HMM TIGR01391; DNA primase complement(1672626..1674425) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914461 YP_494218.1 CDS SAUSA300_1523 NC_007793.1 1674486 1675304 R identified by match to protein family HMM PF03618; hypothetical protein complement(1674486..1675304) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914219 YP_494219.1 CDS SAUSA300_1524 NC_007793.1 1675315 1675854 R identified by match to protein family HMM PF00571; CBS domain-containing protein complement(1675315..1675854) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913667 YP_494220.1 CDS glyS NC_007793.1 1676273 1677664 D Catalyzes a two-step reaction, first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase 1676273..1677664 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913901 YP_494221.1 CDS recO NC_007793.1 1677814 1678566 R identified by match to protein family HMM PF02565; match to protein family HMM TIGR00613; DNA repair protein RecO complement(1677814..1678566) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913929 YP_494222.1 CDS era NC_007793.1 1678588 1679487 R Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome; GTP-binding protein Era complement(1678588..1679487) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914792 YP_494223.1 CDS cdd NC_007793.1 1679488 1679892 R identified by match to protein family HMM PF00383; match to protein family HMM TIGR01354; cytidine deaminase complement(1679488..1679892) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915052 YP_494224.1 CDS dgkA NC_007793.1 1679903 1680247 R identified by match to protein family HMM PF01219; diacylglycerol kinase complement(1679903..1680247) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914015 YP_494225.1 CDS SAUSA300_1530 NC_007793.1 1680250 1680717 R identified by match to protein family HMM PF02130; match to protein family HMM TIGR00043; hypothetical protein complement(1680250..1680717) Staphylococcus aureus subsp. aureus USA300_FPR3757 3912982 YP_494226.1 CDS phoH NC_007793.1 1680718 1681665 R identified by match to protein family HMM PF00013; match to protein family HMM PF02562; PhoH family phosphate starvation-induced protein complement(1680718..1681665) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914322 YP_494227.1 CDS SAUSA300_1532 NC_007793.1 1681969 1682667 R hypothetical protein complement(1681969..1682667) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913560 YP_494228.1 CDS SAUSA300_1533 NC_007793.1 1682684 1683673 R identified by match to protein family HMM PF07251; hypothetical protein complement(1682684..1683673) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913562 YP_494229.1 CDS SAUSA300_1534 NC_007793.1 1683691 1684374 R identified by match to protein family HMM PF01957; hypothetical protein complement(1683691..1684374) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913671 YP_494230.1 CDS rpsU NC_007793.1 1684618 1684794 R a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 complement(1684618..1684794) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914204 YP_494231.1 CDS SAUSA300_1536 NC_007793.1 1685087 1686433 R identified by match to protein family HMM PF00919; match to protein family HMM PF01938; match to protein family HMM PF04055; match to protein family HMM TIGR00089; match to protein family HMM TIGR01579; hypothetical protein complement(1685087..1686433) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913070 YP_494232.1 CDS SAUSA300_1537 NC_007793.1 1686440 1687192 R in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase; 16S ribosomal RNA methyltransferase RsmE complement(1686440..1687192) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915247 YP_494233.1 CDS prmA NC_007793.1 1687194 1688132 R methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype; ribosomal protein L11 methyltransferase complement(1687194..1688132) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913557 YP_494234.1 CDS dnaJ NC_007793.1 1688136 1689275 R chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion; chaperone protein DnaJ complement(1688136..1689275) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915196 YP_494235.1 CDS dnaK NC_007793.1 1689411 1691243 R heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK complement(1689411..1691243) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913472 YP_494236.1 CDS grpE NC_007793.1 1691312 1691938 R with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor; heat shock protein GrpE complement(1691312..1691938) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913468 YP_494237.1 CDS hrcA NC_007793.1 1691970 1692947 R identified by match to protein family HMM PF01628; match to protein family HMM TIGR00331; heat-inducible transcription repressor HrcA complement(1691970..1692947) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913931 YP_494238.1 CDS SAUSA300_1543 NC_007793.1 1693047 1694171 R catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase complement(1693047..1694171) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913053 YP_494239.1 CDS lepA NC_007793.1 1694734 1696557 R binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA complement(1694734..1696557) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914889 YP_494240.1 CDS rpsT NC_007793.1 1696903 1697154 D binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 1696903..1697154 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913673 YP_494241.1 CDS holA NC_007793.1 1697199 1698173 R required for the assembly and function of the DNAX complex which is required for the assembly of the beta subunit onto primed DNA; DNA polymerase III subunit delta complement(1697199..1698173) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913589 YP_494242.1 CDS SAUSA300_1547 NC_007793.1 1698230 1700431 R identified by match to protein family HMM PF00753; match to protein family HMM PF03772; match to protein family HMM TIGR00360; match to protein family HMM TIGR00361; DNA internalization-related competence protein ComEC/Rec2 complement(1698230..1700431) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913537 YP_494243.1 CDS SAUSA300_1548 NC_007793.1 1700436 1700867 R identified by match to protein family HMM PF00383; match to protein family HMM TIGR02571; ComE operon protein 2 complement(1700436..1700867) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915220 YP_494244.1 CDS SAUSA300_1549 NC_007793.1 1700989 1701675 R identified by match to protein family HMM PF00633; match to protein family HMM TIGR00426; ComE operon protein 1 complement(1700989..1701675) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914447 YP_494245.1 CDS SAUSA300_1550 NC_007793.1 1701715 1702431 R hypothetical protein complement(1701715..1702431) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913107 YP_494246.1 CDS SAUSA300_1551 NC_007793.1 1702434 1702787 R identified by match to protein family HMM PF02410; match to protein family HMM TIGR00090; hypothetical protein complement(1702434..1702787) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914985 YP_494247.1 CDS SAUSA300_1552 NC_007793.1 1702788 1703372 R identified by match to protein family HMM PF01966; match to protein family HMM TIGR00488; hypothetical protein complement(1702788..1703372) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915145 YP_494248.1 CDS nadD NC_007793.1 1703362 1703931 R identified by match to protein family HMM PF01467; match to protein family HMM TIGR00125; match to protein family HMM TIGR00482; nicotinate (nicotinamide) nucleotide adenylyltransferase complement(1703362..1703931) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915359 YP_494249.1 CDS SAUSA300_1554 NC_007793.1 1703934 1704224 R identified by match to protein family HMM PF01985; match to protein family HMM TIGR00253; hypothetical protein complement(1703934..1704224) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914040 YP_494250.1 CDS aroE NC_007793.1 1704228 1705034 R identified by match to protein family HMM PF01488; match to protein family HMM TIGR00507; shikimate 5-dehydrogenase complement(1704228..1705034) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914188 YP_494251.1 CDS SAUSA300_1556 NC_007793.1 1705048 1706148 R in Bacillus subtilis this enzyme appears to be involved in 30S ribosomal RNA subunit biogenesis; GTP-binding protein YqeH complement(1705048..1706148) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915092 YP_494252.1 CDS SAUSA300_1557 NC_007793.1 1706149 1706676 R identified by match to protein family HMM TIGR01662; match to protein family HMM TIGR01668; HAD superfamily hydrolase complement(1706149..1706676) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915265 YP_494253.1 CDS mtnN NC_007793.1 1706696 1707382 R identified by match to protein family HMM PF01048; match to protein family HMM TIGR01704; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase complement(1706696..1707382) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914377 YP_494254.1 CDS SAUSA300_1559 NC_007793.1 1708167 1708871 R identified by match to protein family HMM PF01123; match to protein family HMM PF02876; putative enterotoxin type A complement(1708167..1708871) Staphylococcus aureus subsp. aureus USA300_FPR3757 3912880 YP_494255.1 CDS SAUSA300_1560 NC_007793.1 1709333 1710553 R identified by match to protein family HMM PF02661; hypothetical protein complement(1709333..1710553) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914221 YP_494256.1 CDS SAUSA300_1561 NC_007793.1 1710842 1712071 R hypothetical protein complement(1710842..1712071) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915321 YP_494257.1 CDS SAUSA300_1562 NC_007793.1 1712084 1712836 R identified by match to protein family HMM PF03746; LamB/YcsF family protein complement(1712084..1712836) Staphylococcus aureus subsp. aureus USA300_FPR3757 3912913 YP_494258.1 CDS accC NC_007793.1 1712836 1714197 R identified by match to protein family HMM PF00289; match to protein family HMM PF01071; match to protein family HMM PF02222; match to protein family HMM PF02785; match to protein family HMM PF02786; acetyl-CoA carboxylase, biotin carboxylase complement(1712836..1714197) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914601 YP_494259.1 CDS accB NC_007793.1 1714211 1714660 R identified by match to protein family HMM PF00364; acetyl-CoA carboxylase, biotin carboxyl carrier protein complement(1714211..1714660) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914358 YP_494260.1 CDS SAUSA300_1565 NC_007793.1 1714662 1715576 R identified by match to protein family HMM PF02626; hypothetical protein complement(1714662..1715576) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915130 YP_494261.1 CDS SAUSA300_1566 NC_007793.1 1715662 1716363 R identified by match to protein family HMM PF02682; match to protein family HMM TIGR00370; hypothetical protein complement(1715662..1716363) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913310 YP_494262.1 CDS greA NC_007793.1 1716722 1717198 R necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus; transcription elongation factor GreA complement(1716722..1717198) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914462 YP_494263.1 CDS udk NC_007793.1 1717226 1717849 R functions in pyrimidine salvage; pyrimidine ribonucleoside kinase; phosphorylates nucleosides or dinucleosides to make UMP or CMP using ATP or GTP as the donor; uridine kinase complement(1717226..1717849) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913824 YP_494264.1 CDS SAUSA300_1569 NC_007793.1 1717849 1719117 R identified by match to protein family HMM PF01136; U32 family peptidase complement(1717849..1719117) Staphylococcus aureus subsp. aureus USA300_FPR3757 3912902 YP_494265.1 CDS SAUSA300_1570 NC_007793.1 1719129 1720052 R identified by match to protein family HMM PF01136; U32 family peptidase complement(1719129..1720052) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913555 YP_494266.1 CDS SAUSA300_1571 NC_007793.1 1720055 1720693 R identified by match to protein family HMM PF01596; O-methyltransferase family protein complement(1720055..1720693) Staphylococcus aureus subsp. aureus USA300_FPR3757 3912780 YP_494267.1 CDS SAUSA300_1572 NC_007793.1 1720978 1721286 R identified by match to protein family HMM PF06949; hypothetical protein complement(1720978..1721286) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913201 YP_494268.1 CDS SAUSA300_1573 NC_007793.1 1721301 1721729 R similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function; Holliday junction resolvase-like protein complement(1721301..1721729) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913368 YP_494269.1 CDS SAUSA300_1574 NC_007793.1 1721733 1721993 R identified by match to protein family HMM PF06135; hypothetical protein complement(1721733..1721993) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915099 YP_494270.1 CDS alaS NC_007793.1 1722056 1724686 R Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase complement(1722056..1724686) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914494 YP_494271.1 CDS SAUSA300_1576 NC_007793.1 1725029 1727506 R identified by match to protein family HMM TIGR01448; RecD/TraA family helicase complement(1725029..1727506) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913146 YP_494272.1 CDS SAUSA300_1577 NC_007793.1 1727508 1728176 R identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07720; TPR domain-containing protein complement(1727508..1728176) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913188 YP_494273.1 CDS mnmA NC_007793.1 1728638 1729723 R catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA complement(1728638..1729723) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913104 YP_494274.1 CDS SAUSA300_1579 NC_007793.1 1729757 1730899 R identified by match to protein family HMM PF00266; match to protein family HMM PF00282; aminotransferase, class V complement(1729757..1730899) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913927 YP_494275.1 CDS SAUSA300_1580 NC_007793.1 1731211 1732224 D identified by match to protein family HMM PF00296; luciferase family protein 1731211..1732224 Staphylococcus aureus subsp. aureus USA300_FPR3757 3915055 YP_494276.1 CDS SAUSA300_1581 NC_007793.1 1732461 1732607 R hypothetical protein complement(1732461..1732607) Staphylococcus aureus subsp. aureus USA300_FPR3757 3912988 YP_494277.1 CDS SAUSA300_1582 NC_007793.1 1732647 1732829 R identified by match to protein family HMM PF05532; hypothetical protein complement(1732647..1732829) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915190 YP_494278.1 CDS SAUSA300_1583 NC_007793.1 1732929 1733351 R identified by match to protein family HMM PF02082; match to protein family HMM TIGR00738; hypothetical protein complement(1732929..1733351) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913642 YP_494279.2 CDS SAUSA300_1584 NC_007793.1 1733436 1734710 D identified by match to protein family HMM PF00004; recombination factor protein RarA 1733436..1734710 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914522 YP_494280.1 CDS SAUSA300_1585 NC_007793.1 1734871 1735644 R identified by match to protein family HMM PF00899; hypothetical protein complement(1734871..1735644) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915234 YP_494281.1 CDS aspS NC_007793.1 1736105 1737871 R catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase complement(1736105..1737871) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913436 YP_494282.1 CDS hisS NC_007793.1 1737887 1739149 R catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase complement(1737887..1739149) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913111 YP_494283.1 CDS lytH NC_007793.1 1739610 1740485 R identified by match to protein family HMM PF01520; N-acetylmuramoyl-L-alanine amidase complement(1739610..1740485) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913750 YP_494284.1 CDS dtd NC_007793.1 1740482 1740934 R hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine; D-tyrosyl-tRNA(Tyr) deacylase complement(1740482..1740934) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913299 YP_494285.1 CDS SAUSA300_1590 NC_007793.1 1740946 1743156 R identified by match to protein family HMM PF01842; match to protein family HMM PF01966; match to protein family HMM PF02824; match to protein family HMM PF04607; match to protein family HMM TIGR00691; GTP pyrophosphokinase complement(1740946..1743156) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913523 YP_494286.1 CDS apt NC_007793.1 1743563 1744081 R catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis; adenine phosphoribosyltransferase complement(1743563..1744081) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913202 YP_494287.1 CDS recJ NC_007793.1 1744103 1746376 R identified by match to protein family HMM PF01368; match to protein family HMM PF02272; match to protein family HMM TIGR00644; single-stranded-DNA-specific exonuclease RecJ complement(1744103..1746376) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914822 YP_494288.2 CDS secF NC_007793.1 1746579 1748858 R part of the preprotein secretory system; forms a complex with protein YajC; SecDFyajC stimulates the proton motive force-driven protein translocation, seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF; bifunctional preprotein translocase subunit SecD/SecF complement(1746579..1748858) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914727 YP_494289.1 CDS yajC NC_007793.1 1749133 1749393 R identified by match to protein family HMM PF02699; match to protein family HMM TIGR00739; preprotein translocase subunit YajC complement(1749133..1749393) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914083 YP_494290.1 CDS tgt NC_007793.1 1749412 1750551 R Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr); queuine tRNA-ribosyltransferase complement(1749412..1750551) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913586 YP_494291.1 CDS queA NC_007793.1 1750574 1751599 R Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step; S-adenosylmethionine:tRNA ribosyltransferase-isomerase complement(1750574..1751599) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915030 YP_494292.1 CDS ruvB NC_007793.1 1751601 1752605 R promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB complement(1751601..1752605) Staphylococcus aureus subsp. aureus USA300_FPR3757 3912847 YP_494293.1 CDS ruvA NC_007793.1 1752637 1753239 R plays an essential role in ATP-dependent branch migration of the Holliday junction; Holliday junction DNA helicase RuvA complement(1752637..1753239) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913116 YP_494294.1 CDS SAUSA300_1599 NC_007793.1 1753253 1753708 R identified by match to protein family HMM PF01842; hypothetical protein complement(1753253..1753708) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913307 YP_494295.1 CDS obgE NC_007793.1 1753721 1755013 R essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE complement(1753721..1755013) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915294 YP_494296.1 CDS rpmA NC_007793.1 1755368 1755652 R involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 complement(1755368..1755652) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913799 YP_494297.1 CDS SAUSA300_1602 NC_007793.1 1755664 1755984 R identified by match to protein family HMM PF04327; hypothetical protein complement(1755664..1755984) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913131 YP_494298.1 CDS rplU NC_007793.1 1755990 1756298 R identified by match to protein family HMM PF00829; match to protein family HMM TIGR00061; 50S ribosomal protein L21 complement(1755990..1756298) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915300 YP_494299.1 CDS mreD NC_007793.1 1756465 1756995 R identified by match to protein family HMM PF04093; rod shape-determining protein MreD complement(1756465..1756995) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913644 YP_494300.1 CDS mreC NC_007793.1 1756995 1757837 R in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall; rod shape-determining protein MreC complement(1756995..1757837) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913492 YP_494301.1 CDS SAUSA300_1606 NC_007793.1 1758230 1758703 R hypothetical protein complement(1758230..1758703) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913566 YP_494302.1 CDS SAUSA300_1607 NC_007793.1 1759177 1759461 R hypothetical protein complement(1759177..1759461) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913628 YP_494303.1 CDS radC NC_007793.1 1759529 1760185 R Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase; DNA repair protein RadC complement(1759529..1760185) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915287 YP_494304.1 CDS SAUSA300_1609 NC_007793.1 1760212 1760919 R identified by match to protein family HMM PF01478; match to protein family HMM PF06750; type III leader peptidase family protein complement(1760212..1760919) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913910 YP_494305.1 CDS folC NC_007793.1 1761189 1762460 R identified by match to protein family HMM PF02875; match to protein family HMM TIGR01499; folylpolyglutamate synthase complement(1761189..1762460) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914946 YP_494306.1 CDS valS NC_007793.1 1762473 1765103 R valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain; valyl-tRNA synthetase complement(1762473..1765103) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913737 YP_494307.1 CDS tag NC_007793.1 1765506 1766066 D identified by match to protein family HMM PF03352; DNA-3-methyladenine glycosidase 1765506..1766066 Staphylococcus aureus subsp. aureus USA300_FPR3757 3915390 YP_494308.1 CDS SAUSA300_1613 NC_007793.1 1766289 1767362 R identified by match to protein family HMM PF05145; putative abrB protein complement(1766289..1767362) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915151 YP_494309.1 CDS hemL NC_007793.1 1767558 1768844 R Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway; glutamate-1-semialdehyde aminotransferase complement(1767558..1768844) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914650 YP_494310.1 CDS hemB NC_007793.1 1768892 1769866 R catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase complement(1768892..1769866) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914458 YP_494311.1 CDS hemD NC_007793.1 1769869 1770537 R identified by match to protein family HMM PF02602; uroporphyrinogen III synthase complement(1769869..1770537) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915350 YP_494312.1 CDS hemC NC_007793.1 1770559 1771485 R transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis; porphobilinogen deaminase complement(1770559..1771485) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915397 YP_494313.1 CDS hemX NC_007793.1 1771527 1772342 R identified by match to protein family HMM PF01578; hemA concentration negative effector hemX complement(1771527..1772342) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913199 YP_494314.1 CDS hemA NC_007793.1 1772364 1773710 R catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins; glutamyl-tRNA reductase complement(1772364..1773710) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913554 YP_494315.1 CDS engB NC_007793.1 1773927 1774517 R binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential; ribosome biogenesis GTP-binding protein YsxC complement(1773927..1774517) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914929 YP_494316.1 CDS clpX NC_007793.1 1774671 1775933 R binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX complement(1774671..1775933) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913707 YP_494317.1 CDS tig NC_007793.1 1776084 1777385 R Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer; trigger factor complement(1776084..1777385) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913506 YP_494318.1 CDS SAUSA300_1623 NC_007793.1 1777548 1778477 R hypothetical protein complement(1777548..1778477) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914821 YP_494319.1 CDS SAUSA300_1624 NC_007793.1 1778496 1779104 R identified by match to protein family HMM PF00293; MutT/nudix family protein complement(1778496..1779104) Staphylococcus aureus subsp. aureus USA300_FPR3757 3912814 YP_494320.1 CDS rplT NC_007793.1 1779246 1779602 R binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 complement(1779246..1779602) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913922 YP_494321.1 CDS rpmI NC_007793.1 1779649 1779849 R identified by match to protein family HMM PF01632; match to protein family HMM TIGR00001; 50S ribosomal protein L35 complement(1779649..1779849) Staphylococcus aureus subsp. aureus USA300_FPR3757 3912859 YP_494322.1 CDS infC NC_007793.1 1779878 1780405 R IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits; translation initiation factor IF-3 complement(1779878..1780405) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913793 YP_494323.1 CDS lysP NC_007793.1 1780634 1782127 R identified by match to protein family HMM PF00324; lysine-specific permease complement(1780634..1782127) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914553 YP_494324.1 CDS thrS NC_007793.1 1782553 1784490 R catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); threonyl-tRNA synthetase complement(1782553..1784490) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914766 YP_494325.1 CDS dnaI NC_007793.1 1784903 1785823 R Primosomal protein that may act to load helicase DnaC during DNA replication; primosomal protein DnaI complement(1784903..1785823) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914456 YP_494326.1 CDS SAUSA300_1631 NC_007793.1 1785823 1787223 R identified by match to protein family HMM PF07261; replication initiation and membrane attachment protein complement(1785823..1787223) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914971 YP_494327.1 CDS nrdR NC_007793.1 1787224 1787694 R identified by match to protein family HMM PF03477; match to protein family HMM TIGR00244; transcriptional regulator NrdR complement(1787224..1787694) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915033 YP_494328.1 CDS gap NC_007793.1 1787904 1788929 R identified by match to protein family HMM PF00044; match to protein family HMM PF02800; match to protein family HMM TIGR01534; glyceraldehyde 3-phosphate dehydrogenase 2 complement(1787904..1788929) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915282 YP_494329.1 CDS coaE NC_007793.1 1789099 1789722 R catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis; dephospho-CoA kinase complement(1789099..1789722) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913577 YP_494330.1 CDS mutM NC_007793.1 1789738 1790610 R identified by match to protein family HMM PF01149; match to protein family HMM PF06831; match to protein family HMM TIGR00577; formamidopyrimidine-DNA glycosylase complement(1789738..1790610) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914449 YP_494331.1 CDS polA NC_007793.1 1790626 1793256 R identified by match to protein family HMM PF00476; match to protein family HMM PF01367; match to protein family HMM PF02739; match to protein family HMM TIGR00593; DNA polymerase I superfamily protein complement(1790626..1793256) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914057 YP_494332.1 CDS SAUSA300_1637 NC_007793.1 1793550 1795037 R hypothetical protein complement(1793550..1795037) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915129 YP_494333.1 CDS phoR NC_007793.1 1795536 1797197 R sensory box histidine kinase PhoR complement(1795536..1797197) Staphylococcus aureus subsp. aureus USA300_FPR3757 3912917 YP_494334.1 CDS phoP NC_007793.1 1797197 1797901 R identified by match to protein family HMM PF00072; match to protein family HMM PF00486; alkaline phosphatase synthesis transcriptional regulatory protein complement(1797197..1797901) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914279 YP_494335.1 CDS icd NC_007793.1 1798291 1799559 R Converts isocitrate to alpha ketoglutarate; isocitrate dehydrogenase complement(1798291..1799559) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914435 YP_494336.1 CDS gltA NC_007793.1 1799608 1800729 R catalyzes the formation of citrate from acetyl-CoA and oxaloacetate; citrate synthase complement(1799608..1800729) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914350 YP_494337.1 CDS SAUSA300_1642 NC_007793.1 1801077 1802438 D identified by match to protein family HMM PF00324; D-serine/D-alanine/glycine transporter 1801077..1802438 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913760 YP_494338.1 CDS pyk NC_007793.1 1804763 1806520 R identified by match to protein family HMM PF00224; match to protein family HMM PF00391; match to protein family HMM PF02887; match to protein family HMM TIGR01064; pyruvate kinase complement(1804763..1806520) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914281 YP_494339.1 CDS pfkA NC_007793.1 1806542 1807465 R catalyzes the formation of D-fructose 1,6-bisphosphate from D-fructose 6-phosphate in glycolysis; 6-phosphofructokinase complement(1806542..1807465) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915113 YP_494340.1 CDS accA NC_007793.1 1807779 1808723 R catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein; acetyl-CoA carboxylase carboxyltransferase subunit alpha complement(1807779..1808723) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914345 YP_494341.1 CDS accD NC_007793.1 1808723 1809580 R catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer of AccA2D2 subunits; acetyl-CoA carboxylase subunit beta complement(1808723..1809580) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913016 YP_494342.1 CDS SAUSA300_1648 NC_007793.1 1809775 1811004 R identified by match to protein family HMM PF00390; match to protein family HMM PF03949; putative NADP-dependent malic enzyme complement(1809775..1811004) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915297 YP_494343.1 CDS dnaE NC_007793.1 1811454 1814651 R identified by match to protein family HMM PF01336; match to protein family HMM PF02811; match to protein family HMM PF07733; match to protein family HMM TIGR00594; DNA polymerase III, alpha subunit complement(1811454..1814651) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914399 YP_494344.1 CDS SAUSA300_1650 NC_007793.1 1814672 1815613 R identified by match to protein family HMM PF01368; match to protein family HMM PF02272; hypothetical protein complement(1814672..1815613) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914526 YP_494345.1 CDS SAUSA300_1651 NC_007793.1 1815874 1817172 R identified by match to protein family HMM PF00571; match to protein family HMM PF07085; CBS domain-containing protein complement(1815874..1817172) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913315 YP_494346.1 CDS SAUSA300_1652 NC_007793.1 1817377 1817790 D identified by match to protein family HMM PF00582; hypothetical protein 1817377..1817790 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914606 YP_494347.1 CDS SAUSA300_1653 NC_007793.1 1818095 1818784 R catalyzes the opening and hydrolysis of the beta-lactam ring of beta-lactam antibiotics such as penicillins and cephalosporins; metal-dependent hydrolase complement(1818095..1818784) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914503 YP_494348.1 CDS SAUSA300_1654 NC_007793.1 1818959 1820014 D identified by match to protein family HMM PF00557; proline dipeptidase 1818959..1820014 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913775 YP_494349.1 CDS ald NC_007793.1 1820330 1821448 R identified by match to protein family HMM PF01262; match to protein family HMM PF01488; match to protein family HMM PF05222; match to protein family HMM TIGR00518; alanine dehydrogenase complement(1820330..1821448) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914161 YP_494350.1 CDS SAUSA300_1656 NC_007793.1 1821589 1822089 D identified by match to protein family HMM PF00582; universal stress protein 1821589..1822089 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914630 YP_494351.1 CDS ackA NC_007793.1 1822335 1823537 R AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation; utilizes magnesium and ATP; also involved in conversion of acetate to aceyl-CoA; acetate kinase complement(1822335..1823537) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914819 YP_494352.1 CDS SAUSA300_1658 NC_007793.1 1823625 1824572 R hypothetical protein complement(1823625..1824572) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913272 YP_494353.1 CDS tpx NC_007793.1 1824695 1825189 R antioxidant activity; thioredoxin-dependent thiol peroxidase; forms homodimers in solution; shows substrate specificity to alkyl hydroperoxides; periplasmic protein; thiol peroxidase complement(1824695..1825189) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914452 YP_494354.1 CDS SAUSA300_1660 NC_007793.1 1825287 1826057 R identified by match to protein family HMM PF01925; hypothetical protein complement(1825287..1826057) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915199 YP_494355.1 CDS thiI NC_007793.1 1826101 1827324 R Required for the synthesis of the thiazole moiety; thiamine biosynthesis protein ThiI complement(1826101..1827324) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913067 YP_494356.1 CDS SAUSA300_1662 NC_007793.1 1827324 1828463 R identified by match to protein family HMM PF00266; aminotransferase, class V complement(1827324..1828463) Staphylococcus aureus subsp. aureus USA300_FPR3757 3912867 YP_494357.1 CDS SAUSA300_1663 NC_007793.1 1828621 1828761 D hypothetical protein 1828621..1828761 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913649 YP_494358.1 CDS ezrA NC_007793.1 1828835 1830529 R acts to negatively regulates ftsZ ring formation by modulating the frequency and position of the ftsZ ring formation; septation ring formation regulator EzrA complement(1828835..1830529) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913945 YP_494359.1 CDS SAUSA300_1665 NC_007793.1 1830666 1831130 D identified by match to protein family HMM PF01590; hypothetical protein 1830666..1831130 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914390 YP_494360.1 CDS rpsD NC_007793.1 1831374 1831976 D primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 1831374..1831976 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914960 YP_494361.1 CDS SAUSA300_1667 NC_007793.1 1832192 1832935 R identified by match to protein family HMM PF03009; putative glycerophosphoryl diester phosphodiesterase complement(1832192..1832935) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913062 YP_494362.1 CDS SAUSA300_1668 NC_007793.1 1833015 1833461 D identified by match to protein family HMM PF02566; OsmC/Ohr family protein 1833015..1833461 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914234 YP_494363.1 CDS SAUSA300_1669 NC_007793.1 1833575 1834735 D identified by match to protein family HMM PF00266; aminotransferase, class V 1833575..1834735 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914238 YP_494364.1 CDS serA NC_007793.1 1834722 1836326 D catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate; D-3-phosphoglycerate dehydrogenase 1834722..1836326 Staphylococcus aureus subsp. aureus USA300_FPR3757 3915112 YP_494365.1 CDS SAUSA300_1671 NC_007793.1 1836476 1837606 R hypothetical protein complement(1836476..1837606) Staphylococcus aureus subsp. aureus USA300_FPR3757 3912887 YP_494366.1 CDS nagE NC_007793.1 1837713 1839179 R identified by match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR01998; phosphotransferase system, N-acetylglucosamine-specific IIBC component complement(1837713..1839179) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914076 YP_494367.1 CDS SAUSA300_1673 NC_007793.1 1839307 1839924 R identified by match to protein family HMM PF01553; match to protein family HMM TIGR00530; 1-acyl-sn-glycerol-3-phosphate acyltransferases complement(1839307..1839924) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915194 YP_494368.1 CDS SAUSA300_1674 NC_007793.1 1840096 1841370 D identified by match to protein family HMM PF00089; putative serine protease HtrA 1840096..1841370 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914715 YP_494369.1 CDS tyrS NC_007793.1 1841464 1842726 R identified by match to protein family HMM PF00579; match to protein family HMM PF01479; match to protein family HMM TIGR00234; tyrosyl-tRNA synthetase complement(1841464..1842726) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914292 YP_494370.1 CDS sgtA NC_007793.1 1843108 1844013 D identified by match to protein family HMM PF00912; transglycosylase 1843108..1844013 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914396 YP_494371.1 CDS SAUSA300_1677 NC_007793.1 1844216 1846903 R identified by match to protein family HMM PF04650; match to protein family HMM PF05031; match to protein family HMM TIGR01167; match to protein family HMM TIGR01168; cell wall surface anchor family protein complement(1844216..1846903) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913349 YP_494372.1 CDS fhs NC_007793.1 1847198 1848865 R catalyzes the formation of 10-formyltetrahydrofolate from formate and tetrahydrofolate; formate--tetrahydrofolate ligase complement(1847198..1848865) Staphylococcus aureus subsp. aureus USA300_FPR3757 3912778 YP_494373.1 CDS acsA NC_007793.1 1849305 1851011 R Acs; catalyzes the conversion of acetate and CoA to acetyl-CoA; acetyl-CoA synthetase complement(1849305..1851011) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913685 YP_494374.1 CDS acuA NC_007793.1 1851180 1851812 D acetoin utilization protein AcuA 1851180..1851812 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914665 YP_494375.1 CDS acuC NC_007793.1 1851837 1853006 D identified by match to protein family HMM PF00850; acetoin utilization protein AcuC 1851837..1853006 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913247 YP_494376.1 CDS ccpA NC_007793.1 1853104 1854093 R identified by match to protein family HMM PF00356; match to protein family HMM PF00532; match to protein family HMM TIGR01481; catabolite control protein A complement(1853104..1854093) Staphylococcus aureus subsp. aureus USA300_FPR3757 3912825 YP_494377.1 CDS SAUSA300_1683 NC_007793.1 1854633 1855724 R catalyzes the formation of 3-deoxy-D-aribino-hept-2-ulosonate 7-phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate and the formation of prephenate from chorismate; bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase complement(1854633..1855724) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915242 YP_494378.1 CDS SAUSA300_1684 NC_007793.1 1856424 1857623 R hypothetical protein complement(1856424..1857623) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913798 YP_494379.1 CDS SAUSA300_1685 NC_007793.1 1857697 1858188 R identified by match to protein family HMM PF06103; hypothetical protein complement(1857697..1858188) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914209 YP_494380.1 CDS murC NC_007793.1 1858262 1859575 R Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis; UDP-N-acetylmuramate--L-alanine ligase complement(1858262..1859575) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914970 YP_494381.1 CDS SAUSA300_1687 NC_007793.1 1859599 1863423 R identified by match to protein family HMM PF01580; FtsK/SpoIIIE family protein complement(1859599..1863423) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913109 YP_494382.1 CDS SAUSA300_1688 NC_007793.1 1863444 1864040 R identified by match to protein family HMM PF01588; phenylalanyl-tRNA synthetase (beta subunit) complement(1863444..1864040) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914088 YP_494383.1 CDS SAUSA300_1689 NC_007793.1 1864069 1864926 R identified by match to protein family HMM PF07285; hypothetical protein complement(1864069..1864926) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915358 YP_494384.1 CDS SAUSA300_1690 NC_007793.1 1865026 1865337 R identified by match to protein family HMM PF00085; putative thioredoxin complement(1865026..1865337) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913332 YP_494385.1 CDS SAUSA300_1691 NC_007793.1 1865402 1866478 R identified by match to protein family HMM PF05343; glutamyl-aminopeptidase complement(1865402..1866478) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914211 YP_494386.1 CDS SAUSA300_1692 NC_007793.1 1866565 1866876 D identified by match to protein family HMM PF03413; hypothetical protein 1866565..1866876 Staphylococcus aureus subsp. aureus USA300_FPR3757 3915223 YP_494387.1 CDS SAUSA300_1693 NC_007793.1 1867001 1867843 R identified by match to protein family HMM PF00753; hypothetical protein complement(1867001..1867843) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913834 YP_494388.1 CDS trmB NC_007793.1 1868313 1868957 R tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine; tRNA (guanine-N(7)-)-methyltransferase complement(1868313..1868957) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914186 YP_494389.1 CDS SAUSA300_1695 NC_007793.1 1868972 1869697 R identified by match to protein family HMM PF01636; hypothetical protein complement(1868972..1869697) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913128 YP_494390.1 CDS dat NC_007793.1 1870313 1871161 R identified by match to protein family HMM PF01063; match to protein family HMM TIGR01121; D-alanine aminotransferase complement(1870313..1871161) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914893 YP_494391.1 CDS SAUSA300_1697 NC_007793.1 1871165 1872574 R divalent metal ion-dependent extracellular dipeptidase; able to hydrolyze a broad range of dipeptides but no tri-, tetra-, or larger oligopeptides; differences in the amino acid specificity of the cleavage site varies between species; similar to succinyl-diaminopimelate desuccinylases; dipeptidase PepV complement(1871165..1872574) Staphylococcus aureus subsp. aureus USA300_FPR3757 3912864 YP_494392.1 CDS SAUSA300_1698 NC_007793.1 1873324 1873746 R hypothetical protein complement(1873324..1873746) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913267 YP_494393.1 CDS SAUSA300_1699 NC_007793.1 1873763 1874458 R identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093; pseudouridine synthase family 1 protein complement(1873763..1874458) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914728 YP_494394.1 CDS SAUSA300_1700 NC_007793.1 1874455 1876116 R identified by match to protein family HMM PF01943; polysaccharide biosynthesis protein complement(1874455..1876116) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914584 YP_494395.1 CDS SAUSA300_1701 NC_007793.1 1876523 1877791 D identified by match to protein family HMM PF00890; match to protein family HMM PF01266; match to protein family HMM PF03486; match to protein family HMM PF07992; match to protein family HMM TIGR00275; hypothetical protein 1876523..1877791 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913470 YP_494396.1 CDS SAUSA300_1702 NC_007793.1 1877908 1884468 R identified by match to protein family HMM PF04650; match to protein family HMM PF07564; match to protein family HMM TIGR01167; match to protein family HMM TIGR01168; cell wall surface anchor family protein complement(1877908..1884468) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914139 YP_494397.1 CDS SAUSA300_1703 NC_007793.1 1884794 1885105 R identified by match to protein family HMM PF00581; rhodanese-like domain-containing protein complement(1884794..1885105) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913743 YP_494398.1 CDS leuS NC_007793.1 1885127 1887544 R leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucyl-tRNA synthetase complement(1885127..1887544) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915357 YP_494399.1 CDS SAUSA300_1705 NC_007793.1 1887832 1889013 R identified by match to protein family HMM PF07690; putative drug transporter complement(1887832..1889013) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913762 YP_494400.1 CDS SAUSA300_1706 NC_007793.1 1889123 1890076 D identified by match to protein family HMM PF04055; match to protein family HMM TIGR01212; hypothetical protein 1889123..1890076 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914563 YP_494401.1 CDS SAUSA300_1707 NC_007793.1 1890073 1890636 D identified by match to protein family HMM PF06962; hypothetical protein 1890073..1890636 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914774 YP_494402.1 CDS rot NC_007793.1 1890756 1891256 R identified by similarity to GB:AAF22306.1; match to protein family HMM PF01047; match to protein family HMM TIGR01889; accessory regulator Rot complement(1890756..1891256) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914258 YP_494403.1 CDS SAUSA300_1710 NC_007793.1 1892736 1893563 R identified by match to protein family HMM PF00561; putative lysophospholipase complement(1892736..1893563) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914484 YP_494404.1 CDS putA NC_007793.1 1893797 1894798 D identified by match to protein family HMM PF01619; proline dehydrogenase 1893797..1894798 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913686 YP_494405.1 CDS ribH NC_007793.1 1894920 1895384 R RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not; 6,7-dimethyl-8-ribityllumazine synthase complement(1894920..1895384) Staphylococcus aureus subsp. aureus USA300_FPR3757 3912828 YP_494406.1 CDS ribBA NC_007793.1 1895397 1896578 R identified by match to protein family HMM PF00925; match to protein family HMM PF00926; match to protein family HMM TIGR00505; match to protein family HMM TIGR00506; riboflavin biosynthesis protein complement(1895397..1896578) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914099 YP_494407.1 CDS ribE NC_007793.1 1896589 1897221 R catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha complement(1896589..1897221) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913157 YP_494408.1 CDS ribD NC_007793.1 1897228 1898232 R identified by match to protein family HMM PF00383; match to protein family HMM PF01872; match to protein family HMM TIGR00326; riboflavin biosynthesis protein complement(1897228..1898232) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913191 YP_494409.1 CDS SAUSA300_1716 NC_007793.1 1898752 1900254 R hypothetical protein complement(1898752..1900254) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913171 YP_494410.1 CDS arsR NC_007793.1 1900744 1901091 D identified by match to protein family HMM PF01022; arsenical resistance operon repressor 1900744..1901091 Staphylococcus aureus subsp. aureus USA300_FPR3757 3912818 YP_494411.1 CDS arsB NC_007793.1 1901091 1902383 D identified by match to protein family HMM PF02040; match to protein family HMM PF03600; match to protein family HMM TIGR00935; aresenical pump membrane protein 1901091..1902383 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913933 YP_494412.1 CDS arsC NC_007793.1 1902401 1902796 D catalyzes the reduction of arsenate to arsenite; also can dephosphorylate tyrosine phosphorylated proteins, aryl phosphates, and acyl phosphates; arsenate reductase 1902401..1902796 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914352 YP_494413.1 CDS SAUSA300_1720 NC_007793.1 1903091 1903945 R identified by match to protein family HMM PF01832; hypothetical protein complement(1903091..1903945) Staphylococcus aureus subsp. aureus USA300_FPR3757 3912788 YP_494414.1 CDS SAUSA300_1721 NC_007793.1 1904221 1904445 R hypothetical protein complement(1904221..1904445) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914290 YP_494415.1 CDS SAUSA300_1722 NC_007793.1 1904566 1905114 D identified by match to protein family HMM PF04542; hypothetical protein 1904566..1905114 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914431 YP_494416.1 CDS SAUSA300_1723 NC_007793.1 1905657 1906100 R hypothetical protein complement(1905657..1906100) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915169 YP_494417.1 CDS SAUSA300_1724 NC_007793.1 1906396 1907031 D identified by match to protein family HMM PF02517; hypothetical protein 1906396..1907031 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913730 YP_494418.1 CDS SAUSA300_1725 NC_007793.1 1907471 1908184 R similar to novel fructose-6-phosphate aldolase from Escherichia coli; enzyme from Methanocaldococcus janaschii shows transaldolase activity; putative translaldolase complement(1907471..1908184) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915406 YP_494419.1 CDS SAUSA300_1726 NC_007793.1 1909364 1909717 D identified by match to protein family HMM PF02537; crcB family protein 1909364..1909717 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914294 YP_494420.1 CDS SAUSA300_1728 NC_007793.1 1911800 1912633 R identified by match to protein family HMM PF00248; aldo/keto reductase family oxidoreductase complement(1911800..1912633) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913445 YP_494421.1 CDS SAUSA300_1729 NC_007793.1 1912845 1913753 R hypothetical protein complement(1912845..1913753) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913625 YP_494422.1 CDS metK NC_007793.1 1913878 1915071 R catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase complement(1913878..1915071) Staphylococcus aureus subsp. aureus USA300_FPR3757 3912946 YP_494423.1 CDS pckA NC_007793.1 1915442 1917034 D PEP carboxykinase; PEP carboxylase; PEPCK; catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using ATP; phosphoenolpyruvate carboxykinase 1915442..1917034 Staphylococcus aureus subsp. aureus USA300_FPR3757 3915187 YP_494424.1 CDS SAUSA300_1732 NC_007793.1 1917170 1917571 R putative transposase complement(1917170..1917571) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913939 YP_494425.1 CDS SAUSA300_1733 NC_007793.1 1918030 1918776 R hypothetical protein complement(1918030..1918776) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914722 YP_494426.1 CDS SAUSA300_1734 NC_007793.1 1918781 1919260 R identified by match to protein family HMM PF00293; match to protein family HMM TIGR02705; hypothetical protein complement(1918781..1919260) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914233 YP_494427.1 CDS SAUSA300_1736 NC_007793.1 1919320 1919577 D identified by match to protein family HMM PF01809; match to protein family HMM TIGR00278; hypothetical protein 1919320..1919577 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914999 YP_494428.1 CDS menC NC_007793.1 1919574 1920575 R identified by match to protein family HMM TIGR01928; O-succinylbenzoic acid synthetase complement(1919574..1920575) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914690 YP_494429.1 CDS menE NC_007793.1 1920580 1922058 R identified by match to protein family HMM PF00501; match to protein family HMM TIGR01923; O-succinylbenzoate-CoA ligase complement(1920580..1922058) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913648 YP_494430.1 CDS SAUSA300_1738 NC_007793.1 1922217 1922672 R putative lipoprotein complement(1922217..1922672) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913638 YP_494431.1 CDS SAUSA300_1739 NC_007793.1 1922975 1923625 D identified by match to protein family HMM PF05901; hypothetical protein 1922975..1923625 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914493 YP_494432.1 CDS SAUSA300_1740 NC_007793.1 1923706 1924701 D hypothetical protein 1923706..1924701 Staphylococcus aureus subsp. aureus USA300_FPR3757 3912938 YP_494433.1 CDS SAUSA300_1741 NC_007793.1 1924777 1924932 D putative lipoprotein 1924777..1924932 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913807 YP_494434.1 CDS SAUSA300_1742 NC_007793.1 1924933 1925403 D hypothetical protein 1924933..1925403 Staphylococcus aureus subsp. aureus USA300_FPR3757 3912909 YP_494435.1 CDS SAUSA300_1743 NC_007793.1 1925444 1925788 D hypothetical protein 1925444..1925788 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914247 YP_494436.1 CDS SAUSA300_1744 NC_007793.1 1925886 1926437 D hypothetical protein 1925886..1926437 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914849 YP_494437.1 CDS SAUSA300_1745 NC_007793.1 1926655 1927296 R identified by match to protein family HMM PF06114; hypothetical protein complement(1926655..1927296) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913159 YP_494438.1 CDS SAUSA300_1746 NC_007793.1 1927410 1927595 R hypothetical protein complement(1927410..1927595) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915204 YP_494439.1 CDS SAUSA300_1747 NC_007793.1 1927784 1928167 R hypothetical protein complement(1927784..1928167) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913464 YP_494440.1 CDS SAUSA300_1749 NC_007793.1 1929784 1930161 R identified by match to protein family HMM PF07252; hypothetical protein complement(1929784..1930161) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914240 YP_494441.1 CDS SAUSA300_1750 NC_007793.1 1930682 1934794 R hypothetical protein complement(1930682..1934794) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913184 YP_494442.1 CDS hsdS NC_007793.1 1935644 1936843 R identified by match to protein family HMM PF01420; type I restriction-modification enzyme, S subunit complement(1935644..1936843) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914124 YP_494443.1 CDS hsdM NC_007793.1 1936836 1938575 R identified by match to protein family HMM PF02384; match to protein family HMM TIGR00497; type I restriction-modification system, M subunit complement(1936836..1938575) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913010 YP_494444.1 CDS splF NC_007793.1 1938755 1939474 R identified by match to protein family HMM PF00089; serine protease SplF complement(1938755..1939474) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914815 YP_494445.1 CDS splE NC_007793.1 1939625 1940341 R identified by match to protein family HMM PF00089; serine protease SplE complement(1939625..1940341) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913007 YP_494446.1 CDS splD NC_007793.1 1940499 1941218 R identified by match to protein family HMM PF00089; serine protease SplD complement(1940499..1941218) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914726 YP_494447.1 CDS splC NC_007793.1 1941339 1942058 R identified by match to protein family HMM PF00089; serine protease SplC complement(1941339..1942058) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915154 YP_494448.1 CDS splB NC_007793.1 1942116 1942838 R identified by match to protein family HMM PF00089; serine protease SplB complement(1942116..1942838) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913151 YP_494449.1 CDS splA NC_007793.1 1942963 1943670 R identified by match to protein family HMM PF00089; serine protease SplA complement(1942963..1943670) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914167 YP_494450.1 CDS SAUSA300_1759 NC_007793.1 1944634 1945200 D hypothetical protein 1944634..1945200 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913100 YP_494451.1 CDS epiG NC_007793.1 1945674 1946372 R lantibiotic epidermin immunity protein F complement(1945674..1946372) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913079 YP_494452.1 CDS epiE NC_007793.1 1946369 1947130 R lantibiotic epidermin immunity protein F complement(1946369..1947130) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915166 YP_494453.1 CDS epiF NC_007793.1 1947127 1947819 R identified by match to protein family HMM PF00005; lantibiotic epidermin immunity protein F complement(1947127..1947819) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914535 YP_494454.1 CDS epiP NC_007793.1 1947842 1949215 R identified by match to protein family HMM PF00082; lantibiotic epidermin leader peptide processing serine protease EpiP complement(1947842..1949215) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914866 YP_494455.1 CDS epiD NC_007793.1 1949225 1949743 R identified by match to protein family HMM PF02441; lantibiotic epidermin biosynthesis protein EpiD complement(1949225..1949743) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913637 YP_494456.1 CDS epiC NC_007793.1 1949759 1951003 R identified by match to protein family HMM PF05147; lantibiotic epidermin biosynthesis protein EpiC complement(1949759..1951003) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913829 YP_494457.1 CDS epiB NC_007793.1 1950996 1953989 R identified by match to protein family HMM PF04737; match to protein family HMM PF04738; lantibiotic epidermin biosynthesis protein EpiB complement(1950996..1953989) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914041 YP_494458.1 CDS epiA NC_007793.1 1954054 1954197 R identified by match to protein family HMM PF02052; lantibiotic epidermin biosynthesis protein EpiA complement(1954054..1954197) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914739 YP_494459.1 CDS lukD NC_007793.1 1955319 1956302 R identified by match to protein family HMM PF07968; match to protein family HMM TIGR01002; leukotoxin LukD complement(1955319..1956302) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914430 YP_494460.1 CDS lukE NC_007793.1 1956304 1957239 R identified by match to protein family HMM PF07968; match to protein family HMM TIGR01002; leukotoxin LukE complement(1956304..1957239) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914293 YP_494461.1 CDS SAUSA300_1770 NC_007793.1 1958122 1958577 D hypothetical protein 1958122..1958577 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913872 YP_494462.1 CDS SAUSA300_1771 NC_007793.1 1958590 1959231 D hypothetical protein 1958590..1959231 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913439 YP_494463.1 CDS SAUSA300_1780 NC_007793.1 1961834 1962388 R identified by match to protein family HMM PF06821; hypothetical protein complement(1961834..1962388) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914817 YP_494464.1 CDS hemG NC_007793.1 1962711 1964111 R catalyzes the formation of protoporphyrin IX from protoporphyrinogen IX; protoporphyrinogen oxidase complement(1962711..1964111) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915048 YP_494465.1 CDS hemH NC_007793.1 1964135 1965058 R protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic; ferrochelatase complement(1964135..1965058) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914222 YP_494466.1 CDS hemE NC_007793.1 1965116 1966153 R catalyzes the formation of coproporphyrinogen from uroporphyrinogen III; uroporphyrinogen decarboxylase complement(1965116..1966153) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915024 YP_494467.1 CDS SAUSA300_1784 NC_007793.1 1966416 1966919 D signal transduction protein TRAP 1966416..1966919 Staphylococcus aureus subsp. aureus USA300_FPR3757 3912928 YP_494468.1 CDS SAUSA300_1785 NC_007793.1 1967043 1968266 R identified by match to protein family HMM PF05975; putative ABC transporter protein EcsB complement(1967043..1968266) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913403 YP_494469.1 CDS SAUSA300_1786 NC_007793.1 1968259 1968999 R identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein EcsA complement(1968259..1968999) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913905 YP_494470.1 CDS SAUSA300_1787 NC_007793.1 1969133 1969555 D identified by match to protein family HMM PF01230; HIT family protein 1969133..1969555 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914048 YP_494471.1 CDS SAUSA300_1788 NC_007793.1 1969697 1970062 D hypothetical protein 1969697..1970062 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914321 YP_494472.1 CDS SAUSA300_1789 NC_007793.1 1970795 1971352 D hypothetical protein 1970795..1971352 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914734 YP_494473.1 CDS prsA NC_007793.1 1971557 1972519 D identified by match to protein family HMM PF00639; foldase protein PrsA 1971557..1972519 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914205 YP_494474.1 CDS cbf1 NC_007793.1 1972640 1973581 R catalyzes the exonucleic cleavage of mRNA yielding nucleioside 5'-phosphates; 3'-5' exoribonuclease YhaM complement(1972640..1973581) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913626 YP_494475.1 CDS SAUSA300_1792 NC_007793.1 1973578 1976514 R hypothetical protein complement(1973578..1976514) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914019 YP_494476.1 CDS SAUSA300_1793 NC_007793.1 1976504 1977700 R identified by match to protein family HMM PF00149; hypothetical protein complement(1976504..1977700) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913847 YP_494477.1 CDS SAUSA300_1794 NC_007793.1 1977991 1978089 R hypothetical protein complement(1977991..1978089) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915370 YP_494478.1 CDS SAUSA300_1795 NC_007793.1 1978472 1978816 R identified by match to protein family HMM PF06133; hypothetical protein complement(1978472..1978816) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914068 YP_494479.1 CDS SAUSA300_1796 NC_007793.1 1978885 1980009 R identified by match to protein family HMM PF04286; hypothetical protein complement(1978885..1980009) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913757 YP_494480.1 CDS SAUSA300_1797 NC_007793.1 1980188 1980652 R hypothetical protein complement(1980188..1980652) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913531 YP_494481.1 CDS SAUSA300_1798 NC_007793.1 1981008 1981631 R identified by match to protein family HMM PF00072; match to protein family HMM PF00196; DNA-binding response regulator complement(1981008..1981631) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913012 YP_494482.1 CDS SAUSA300_1799 NC_007793.1 1981653 1982765 R identified by match to protein family HMM PF02518; match to protein family HMM PF07730; putative sensor histidine kinase complement(1981653..1982765) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913861 YP_494483.1 CDS SAUSA300_1800 NC_007793.1 1982928 1983749 D identified by match to protein family HMM PF00849; ribosomal large subunit pseudouridine synthase D 1982928..1983749 Staphylococcus aureus subsp. aureus USA300_FPR3757 3915210 YP_494484.1 CDS fumC NC_007793.1 1984212 1985597 R class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle; fumarate hydratase complement(1984212..1985597) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913056 YP_494485.1 CDS SAUSA300_1802 NC_007793.1 1985793 1986188 R hypothetical protein complement(1985793..1986188) Staphylococcus aureus subsp. aureus USA300_FPR3757 3912942 YP_494486.1 CDS SAUSA300_1803 NC_007793.1 1986965 1987117 R hypothetical protein complement(1986965..1987117) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914905 YP_494487.1 CDS SAUSA300_1804 NC_007793.1 1987142 1987741 R hypothetical protein complement(1987142..1987741) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915067 YP_494488.1 CDS SAUSA300_1805 NC_007793.1 1987900 1988370 R identified by match to protein family HMM PF00588; match to protein family HMM TIGR00185; RNA methyltransferase complement(1987900..1988370) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913259 YP_494489.1 CDS SAUSA300_1806 NC_007793.1 1988375 1989502 R identified by match to protein family HMM PF00037; match to protein family HMM TIGR00276; putative iron-sulfur cluster-binding protein complement(1988375..1989502) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913114 YP_494490.1 CDS SAUSA300_1807 NC_007793.1 1989653 1990381 R identified by match to protein family HMM PF00005; amino acid ABC transporter ATP-binding protein complement(1989653..1990381) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914855 YP_494491.1 CDS SAUSA300_1808 NC_007793.1 1990368 1991825 R identified by match to protein family HMM PF00497; match to protein family HMM PF00528; match to protein family HMM TIGR01726; amino acid ABC transporter permease/substrate-binding protein complement(1990368..1991825) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913691 YP_494492.1 CDS SAUSA300_1809 NC_007793.1 1992083 1993144 R identified by match to protein family HMM PF02378; hypothetical protein complement(1992083..1993144) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914126 YP_494493.1 CDS SAUSA300_1810 NC_007793.1 1993601 1994956 D identified by match to protein family HMM PF01610; IS1181, transposase 1993601..1994956 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914777 YP_494494.1 CDS SAUSA300_1842 NC_007793.1 2003464 2003910 R identified by match to protein family HMM PF01475; FUR family transcriptional regulator complement(2003464..2003910) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915126 YP_494495.1 CDS SAUSA300_1843 NC_007793.1 2004007 2004957 R identified by match to protein family HMM PF00389; match to protein family HMM PF02826; D-isomer specific 2-hydroxyacid dehydrogenase family protein complement(2004007..2004957) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914361 YP_494496.1 CDS SAUSA300_1844 NC_007793.1 2004963 2005418 R identified by match to protein family HMM PF00578; bacterioferritin comigratory protein complement(2004963..2005418) Staphylococcus aureus subsp. aureus USA300_FPR3757 3912884 YP_494497.1 CDS hemL NC_007793.1 2005499 2006788 D converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate; glutamate-1-semialdehyde aminotransferase 2005499..2006788 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913658 YP_494498.1 CDS SAUSA300_1846 NC_007793.1 2007132 2008175 D identified by match to protein family HMM PF06081; hypothetical protein 2007132..2008175 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914481 YP_494499.1 CDS SAUSA300_1847 NC_007793.1 2008366 2010102 R identified by match to protein family HMM PF00005; match to protein family HMM PF00664; hypothetical protein complement(2008366..2010102) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914980 YP_494500.1 CDS SAUSA300_1848 NC_007793.1 2010393 2010935 R identified by match to protein family HMM PF04167; hypothetical protein complement(2010393..2010935) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913371 YP_494501.1 CDS mutY NC_007793.1 2011237 2012274 R identified by match to protein family HMM PF00633; match to protein family HMM PF00730; match to protein family HMM TIGR01084; A/G-specific adenine glycosylase complement(2011237..2012274) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914767 YP_494502.1 CDS SAUSA300_1850 NC_007793.1 2012426 2013403 D identified by match to protein family HMM PF04307; hypothetical protein 2012426..2013403 Staphylococcus aureus subsp. aureus USA300_FPR3757 3915369 YP_494503.1 CDS SAUSA300_1851 NC_007793.1 2013664 2014500 R hypothetical protein complement(2013664..2014500) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913676 YP_494504.1 CDS SAUSA300_1852 NC_007793.1 2014509 2016026 R putative ABC transporter ATP-binding protein complement(2014509..2016026) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915272 YP_494505.1 CDS SAUSA300_1853 NC_007793.1 2016041 2016355 R hypothetical protein complement(2016041..2016355) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914309 YP_494506.1 CDS recX NC_007793.1 2016333 2017151 R binds RecA and inhibits RecA-mediated DNA strand exchange and ATP hydrolysis and coprotease activities; recombination regulator RecX complement(2016333..2017151) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914023 YP_494507.1 CDS sgtB NC_007793.1 2017412 2018221 R monofunctional; catalyzes the elongation of glycan strands in cell wall biosynthesis; glycosyltransferase complement(2017412..2018221) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914519 YP_494508.1 CDS SAUSA300_1856 NC_007793.1 2018562 2019077 R identified by match to protein family HMM PF01965; match to protein family HMM TIGR01382; hypothetical protein complement(2018562..2019077) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913164 YP_494509.1 CDS SAUSA300_1857 NC_007793.1 2019208 2019369 R hypothetical protein complement(2019208..2019369) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914151 YP_494510.1 CDS SAUSA300_1858 NC_007793.1 2019593 2020744 D identified by match to protein family HMM PF04055; hypothetical protein 2019593..2020744 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914154 YP_494511.1 CDS SAUSA300_1859 NC_007793.1 2021004 2021534 R identified by match to protein family HMM PF03061; hypothetical protein complement(2021004..2021534) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915250 YP_494512.1 CDS pepS NC_007793.1 2021624 2022871 R identified by match to protein family HMM PF02073; aminopeptidase PepS complement(2021624..2022871) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913797 YP_494513.1 CDS SAUSA300_1861 NC_007793.1 2022883 2023083 R identified by match to protein family HMM PF06569; hypothetical protein complement(2022883..2023083) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913081 YP_494514.1 CDS SAUSA300_1862 NC_007793.1 2023230 2023694 D identified by match to protein family HMM PF01451; hypothetical protein 2023230..2023694 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913409 YP_494515.1 CDS SAUSA300_1863 NC_007793.1 2023701 2023976 D hypothetical protein 2023701..2023976 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913097 YP_494516.1 CDS SAUSA300_1864 NC_007793.1 2024254 2025471 D identified by match to protein family HMM PF03631; match to protein family HMM TIGR00765; hypothetical protein 2024254..2025471 Staphylococcus aureus subsp. aureus USA300_FPR3757 3915136 YP_494517.1 CDS vraR NC_007793.1 2025587 2026216 R identified by match to protein family HMM PF00072; match to protein family HMM PF00196; DNA-binding response regulator complement(2025587..2026216) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913571 YP_494518.1 CDS vraS NC_007793.1 2026206 2027249 R identified by match to protein family HMM PF02518; match to protein family HMM PF07730; two-component sensor histidine kinase complement(2026206..2027249) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915290 YP_494519.1 CDS SAUSA300_1867 NC_007793.1 2027246 2027947 R hypothetical protein complement(2027246..2027947) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915182 YP_494520.1 CDS SAUSA300_1868 NC_007793.1 2027962 2028348 R hypothetical protein complement(2027962..2028348) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915323 YP_494521.1 CDS map NC_007793.1 2028565 2029323 R catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mn; methionine aminopeptidase complement(2028565..2029323) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915147 YP_494522.1 CDS SAUSA300_1870 NC_007793.1 2029851 2030837 D hypothetical protein 2029851..2030837 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913050 YP_494523.1 CDS SAUSA300_1871 NC_007793.1 2031386 2031799 R hypothetical protein complement(2031386..2031799) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914089 YP_494524.1 CDS SAUSA300_1872 NC_007793.1 2032024 2032755 R identified by match to protein family HMM PF07685; hypothetical protein complement(2032024..2032755) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914474 YP_494525.1 CDS SAUSA300_1873 NC_007793.1 2032757 2034070 R Mur ligase family protein complement(2032757..2034070) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913850 YP_494526.1 CDS SAUSA300_1874 NC_007793.1 2034362 2034862 D identified by match to protein family HMM PF00210; ferritins family protein 2034362..2034862 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913023 YP_494527.1 CDS SAUSA300_1875 NC_007793.1 2035251 2035805 D identified by match to protein family HMM PF00929; exonuclease 2035251..2035805 Staphylococcus aureus subsp. aureus USA300_FPR3757 3912950 YP_494528.1 CDS SAUSA300_1876 NC_007793.1 2035873 2036913 R involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function; DNA polymerase IV complement(2035873..2036913) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913878 YP_494529.1 CDS SAUSA300_1877 NC_007793.1 2037190 2037720 R hypothetical protein complement(2037190..2037720) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913645 YP_494530.1 CDS rumA NC_007793.1 2037890 2039251 R identified by match to protein family HMM PF02475; match to protein family HMM PF05958; match to protein family HMM TIGR00479; RNA methyltransferase complement(2037890..2039251) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915405 YP_494531.1 CDS SAUSA300_1879 NC_007793.1 2039332 2040279 R similar to YegS from E. coli; putative lipid kinase complement(2039332..2040279) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914133 YP_494532.1 CDS gatB NC_007793.1 2041048 2042475 R allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit B complement(2041048..2042475) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913525 YP_494533.1 CDS gatA NC_007793.1 2042488 2043945 R allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit A complement(2042488..2043945) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914028 YP_494534.1 CDS gatC NC_007793.1 2043947 2044249 R allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; some Mycoplasma proteins contain an N-terminal fusion to an unknown domain; aspartyl/glutamyl-tRNA amidotransferase subunit C complement(2043947..2044249) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913514 YP_494535.1 CDS putP NC_007793.1 2044616 2046154 D identified by match to protein family HMM PF00474; match to protein family HMM TIGR00813; match to protein family HMM TIGR02121; high affinity proline permease 2044616..2046154 Staphylococcus aureus subsp. aureus USA300_FPR3757 3912927 YP_494536.1 CDS SAUSA300_1884 NC_007793.1 2046243 2047442 R identified by match to protein family HMM PF07537; CamS sex pheromone cAM373 complement(2046243..2047442) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913487 YP_494537.1 CDS ligA NC_007793.1 2047455 2049458 R identified by match to protein family HMM PF00533; match to protein family HMM PF01653; match to protein family HMM PF03119; match to protein family HMM PF03120; match to protein family HMM TIGR00575; DNA ligase complement(2047455..2049458) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914227 YP_494538.1 CDS pcrA NC_007793.1 2049462 2051654 R identified by match to protein family HMM PF00580; match to protein family HMM TIGR01073; ATP-dependent DNA helicase, PcrA complement(2049462..2051654) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913060 YP_494539.1 CDS pcrB NC_007793.1 2051651 2052343 R PcrB-like protein; GGGP synthase; member of prenyltransferases that transfer isoprenoid groups to nonisoprenoid acceptors; functions in form GGGP from glycerol-1-phosphate (G-1-P) and geranylgeranyl pyrophosphate (GGPP); important in lipid metabolism and especially important as the ether linkages in archaea are different than those in bacteria; GGGP synthase lies at the branch point for membrane lipid biosynthesis; cytosolic; T acidophilum protein acts as a homodimer while M thermoautotrophicum protein has been reported to function as a pentamer; geranylgeranylglyceryl phosphate synthase-like protein complement(2051651..2052343) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913937 YP_494540.1 CDS SAUSA300_1888 NC_007793.1 2052515 2052817 R identified by match to protein family HMM PF01371; match to protein family HMM TIGR02531; hypothetical protein complement(2052515..2052817) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914589 YP_494541.1 CDS purB NC_007793.1 2052926 2054221 R Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; adenylosuccinate lyase complement(2052926..2054221) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914957 YP_494542.1 CDS SAUSA300_1890 NC_007793.1 2055082 2056248 D identified by match to protein family HMM PF05543; staphopain A 2055082..2056248 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913266 YP_494543.1 CDS SAUSA300_1891 NC_007793.1 2056897 2057070 R hypothetical protein complement(2056897..2057070) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913741 YP_494544.1 CDS SAUSA300_1892 NC_007793.1 2057051 2057653 R hypothetical protein complement(2057051..2057653) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913653 YP_494545.1 CDS nadE NC_007793.1 2057924 2058745 R catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers; NAD synthetase complement(2057924..2058745) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914692 YP_494546.1 CDS SAUSA300_1894 NC_007793.1 2058738 2060207 R catalyzes the formation of 5-phospho-alpha-D-ribose 1-diphosphate and nicotinate from nicotinate D-ribonucleotide and diphosphate; nicotinate phosphoribosyltransferase complement(2058738..2060207) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915236 YP_494547.1 CDS SAUSA300_1895 NC_007793.1 2060391 2061467 D identified by match to protein family HMM PF02898; nitric oxide synthase oxygenase 2060391..2061467 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913585 YP_494548.1 CDS pheA NC_007793.1 2061487 2062281 D identified by match to protein family HMM PF00800; match to protein family HMM PF01842; prephenate dehydratase 2061487..2062281 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914955 YP_494549.1 CDS SAUSA300_1897 NC_007793.1 2062471 2064033 R identified by match to protein family HMM PF00939; match to protein family HMM PF03600; match to protein family HMM TIGR00785; sodium-dependent transporter complement(2062471..2064033) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913308 YP_494550.1 CDS SAUSA300_1898 NC_007793.1 2064238 2065335 R hypothetical protein complement(2064238..2065335) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913414 YP_494551.1 CDS SAUSA300_1899 NC_007793.1 2065707 2066267 D identified by match to protein family HMM PF00857; hypothetical protein 2065707..2066267 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914700 YP_494552.1 CDS ppaC NC_007793.1 2066320 2067249 D catalyzes the hydrolysis of pyrophosphate to phosphate; putative manganese-dependent inorganic pyrophosphatase 2066320..2067249 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914568 YP_494553.1 CDS aldA2 NC_007793.1 2067669 2069048 D identified by match to protein family HMM PF00171; aldehyde dehydrogenase 2067669..2069048 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913350 YP_494554.1 CDS SAUSA300_1902 NC_007793.1 2069168 2070196 R hypothetical protein complement(2069168..2070196) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915281 YP_494555.1 CDS SAUSA300_1903 NC_007793.1 2070466 2070867 D hypothetical protein 2070466..2070867 Staphylococcus aureus subsp. aureus USA300_FPR3757 3915263 YP_494556.1 CDS SAUSA300_1904 NC_007793.1 2071440 2071613 R hypothetical protein complement(2071440..2071613) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913773 YP_494557.1 CDS SAUSA300_1905 NC_007793.1 2072064 2073104 D identified by match to protein family HMM PF02275; match to protein family HMM PF03417; hypothetical protein 2072064..2073104 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913318 YP_494558.1 CDS SAUSA300_1906 NC_007793.1 2073161 2074003 R hypothetical protein complement(2073161..2074003) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914192 YP_494559.1 CDS SAUSA300_1907 NC_007793.1 2074000 2074557 R identified by match to protein family HMM PF08006; hypothetical protein complement(2074000..2074557) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913978 YP_494560.1 CDS SAUSA300_1908 NC_007793.1 2074617 2075141 R hypothetical protein complement(2074617..2075141) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914990 YP_494561.1 CDS SAUSA300_1909 NC_007793.1 2075262 2075825 D hypothetical protein 2075262..2075825 Staphylococcus aureus subsp. aureus USA300_FPR3757 3912850 YP_494562.1 CDS SAUSA300_1910 NC_007793.1 2075891 2076631 R hypothetical protein complement(2075891..2076631) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914389 YP_494563.1 CDS SAUSA300_1911 NC_007793.1 2076631 2077503 R identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein complement(2076631..2077503) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914138 YP_494564.1 CDS SAUSA300_1912 NC_007793.1 2077500 2078180 R hypothetical protein complement(2077500..2078180) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914514 YP_494565.1 CDS SAUSA300_1913 NC_007793.1 2078181 2079077 R identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein complement(2078181..2079077) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915384 YP_494566.1 CDS SAUSA300_1914 NC_007793.1 2079074 2079454 R identified by match to protein family HMM PF00392; GntR family regulatory protein complement(2079074..2079454) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913428 YP_494567.1 CDS SAUSA300_1915 NC_007793.1 2079718 2079894 R hypothetical protein complement(2079718..2079894) Staphylococcus aureus subsp. aureus USA300_FPR3757 3912897 YP_494568.1 CDS SAUSA300_1916 NC_007793.1 2080435 2081721 D identified by match to protein family HMM PF00155; hypothetical protein 2080435..2081721 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914404 YP_494569.1 CDS SAUSA300_1918 NC_007793.1 2084489 2084686 D truncated beta-hemolysin 2084489..2084686 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913059 YP_494570.1 CDS SAUSA300_1919 NC_007793.1 2085861 2086211 R hypothetical protein complement(2085861..2086211) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914856 YP_494571.1 CDS chs NC_007793.1 2086896 2087345 D secreted protein that specifically inhibits the activation of neutrophils and monocytes by binding to the formylated peptide receptor and the C5a receptor; blocks neutrophil migration towards the infection site and hinders the establishment of the initial defense against the infection; chemotaxis-inhibiting protein CHIPS 2086896..2087345 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913656 YP_494572.1 CDS SAUSA300_1921 NC_007793.1 2087440 2087736 R truncated amidase complement(2087440..2087736) Staphylococcus aureus subsp. aureus USA300_FPR3757 3912874 YP_494573.1 CDS sak NC_007793.1 2088425 2088916 R identified by match to protein family HMM PF02821; staphylokinase complement(2088425..2088916) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913751 YP_494574.1 CDS SAUSA300_1923 NC_007793.1 2089107 2089862 R identified by match to protein family HMM PF05257; autolysin complement(2089107..2089862) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913384 YP_494575.1 CDS SAUSA300_1924 NC_007793.1 2089874 2090128 R identified by similarity to PIR:A89984; match to protein family HMM PF04531; match to protein family HMM TIGR01598; holin complement(2089874..2090128) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913716 YP_494576.1 CDS SAUSA300_1925 NC_007793.1 2090666 2090962 R phiPVL ORF17-like protein complement(2090666..2090962) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914441 YP_494577.1 CDS SAUSA300_1926 NC_007793.1 2091020 2091307 R phi77 ORF044-like protein complement(2091020..2091307) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914263 YP_494578.1 CDS SAUSA300_1927 NC_007793.1 2091354 2091506 R phi77 ORF109-like protein complement(2091354..2091506) Staphylococcus aureus subsp. aureus USA300_FPR3757 3912898 YP_494579.1 CDS SAUSA300_1928 NC_007793.1 2091496 2095281 R identified by match to protein family HMM TIGR01665; phi77 ORF002-like protein, phage minor structural protein complement(2091496..2095281) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914635 YP_494580.1 CDS SAUSA300_1929 NC_007793.1 2095297 2096781 R phi77 ORF004-like protein phage tail component complement(2095297..2096781) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914637 YP_494581.1 CDS SAUSA300_1930 NC_007793.1 2096778 2101307 R identified by match to protein family HMM PF01464; match to protein family HMM PF01551; match to protein family HMM TIGR01760; phi77 ORF001-like protein, phage tail tape measure protein complement(2096778..2101307) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915309 YP_494582.1 CDS SAUSA300_1931 NC_007793.1 2101364 2101525 R phi77 ORF100-like protein complement(2101364..2101525) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914547 YP_494583.1 CDS SAUSA300_1932 NC_007793.1 2101552 2101902 R hypothetical protein complement(2101552..2101902) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914846 YP_494584.1 CDS SAUSA300_1933 NC_007793.1 2101952 2102092 R hypothetical protein complement(2101952..2102092) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914349 YP_494585.1 CDS SAUSA300_1934 NC_007793.1 2102218 2102862 R identified by match to protein family HMM TIGR01603; phi77 ORF020-like protein, phage major tail protein complement(2102218..2102862) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914989 YP_494586.1 CDS SAUSA300_1935 NC_007793.1 2103267 2103671 R phi77 ORF029-like protein complement(2103267..2103671) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913925 YP_494587.1 CDS SAUSA300_1936 NC_007793.1 2103668 2104030 R identical to SA1771 (N315); identified by match to protein family HMM TIGR01563; hypothetical protein complement(2103668..2104030) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913150 YP_494588.1 CDS SAUSA300_1937 NC_007793.1 2104288 2104572 R phi77 ORF045-like protein complement(2104288..2104572) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914367 YP_494589.1 CDS SAUSA300_1938 NC_007793.1 2104592 2105737 R phi77 ORF006-like protein capsid protein complement(2104592..2105737) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913084 YP_494590.1 CDS SAUSA300_1939 NC_007793.1 2105761 2106498 R identified by match to protein family HMM PF00574; phi77 ORF015-like protein protease complement(2105761..2106498) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913917 YP_494591.1 CDS SAUSA300_1940 NC_007793.1 2106482 2107669 R identified by match to protein family HMM PF04860; match to protein family HMM TIGR01537; phage portal protein complement(2106482..2107669) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913014 YP_494592.1 CDS SAUSA300_1941 NC_007793.1 2107685 2109346 R identified by match to protein family HMM PF03354; phi77 ORF003-like protein, phage terminase, large subunit complement(2107685..2109346) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913271 YP_494593.1 CDS SAUSA300_1942 NC_007793.1 2109343 2109777 R hypothetical protein complement(2109343..2109777) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914966 YP_494594.1 CDS SAUSA300_1943 NC_007793.1 2109817 2110116 R identified by match to protein family HMM PF01844; phi77 ORF040-like protein complement(2109817..2110116) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914252 YP_494595.1 CDS SAUSA300_1944 NC_007793.1 2110348 2110683 R phi77 ORF026-like protein phage transcriptional activator complement(2110348..2110683) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914775 YP_494596.1 CDS SAUSA300_1945 NC_007793.1 2110792 2110992 R identified by match to protein family HMM PF07438; phi77 ORF071-like protein complement(2110792..2110992) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913618 YP_494597.1 CDS SAUSA300_1946 NC_007793.1 2110992 2111141 R identified by match to protein family HMM PF06116; phiPVL ORF057-like protein, transcriptional activator RinB complement(2110992..2111141) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915128 YP_494598.1 CDS SAUSA300_1947 NC_007793.1 2111138 2111524 R phi77 ORF031-like protein complement(2111138..2111524) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914109 YP_494599.1 CDS SAUSA300_1948 NC_007793.1 2111521 2111727 R identified by match to protein family HMM PF07129; phi77 ORF069-like protein complement(2111521..2111727) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914997 YP_494600.1 CDS dut NC_007793.1 2112006 2112539 R identified by match to protein family HMM PF00692; match to protein family HMM TIGR00576; dUTP diphosphatase complement(2112006..2112539) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913209 YP_494601.1 CDS SAUSA300_1950 NC_007793.1 2112532 2112774 R hypothetical protein complement(2112532..2112774) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914288 YP_494602.1 CDS SAUSA300_1951 NC_007793.1 2112764 2113000 R phiPVL ORF052-like protein complement(2112764..2113000) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914533 YP_494603.1 CDS SAUSA300_1952 NC_007793.1 2112993 2113364 R phiPV083 ORF027-like protein complement(2112993..2113364) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914140 YP_494604.1 CDS SAUSA300_1953 NC_007793.1 2113373 2113615 R identified by match to protein family HMM PF06194; phiPVL ORF051-like protein complement(2113373..2113615) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913138 YP_494605.1 CDS SAUSA300_1954 NC_007793.1 2113619 2113996 R identified by match to protein family HMM PF07768; phiPVL ORF050-like protein complement(2113619..2113996) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914131 YP_494606.1 CDS SAUSA300_1955 NC_007793.1 2114000 2114404 R identified by match to protein family HMM PF05866; putative endodeoxyribonuclease RusA complement(2114000..2114404) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915382 YP_494607.1 CDS SAUSA300_1956 NC_007793.1 2114413 2114631 R hypothetical protein complement(2114413..2114631) Staphylococcus aureus subsp. aureus USA300_FPR3757 3912786 YP_494608.1 CDS SAUSA300_1957 NC_007793.1 2114638 2115531 R identified by match to protein family HMM PF04271; match to protein family HMM TIGR01446; phiPVL ORF046-like protein complement(2114638..2115531) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914952 YP_494609.1 CDS SAUSA300_1958 NC_007793.1 2115561 2116031 R identified by match to protein family HMM PF00436; match to protein family HMM TIGR00621; single-strand binding protein complement(2115561..2116031) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914250 YP_494610.1 CDS SAUSA300_1959 NC_007793.1 2116032 2116517 R phiPVL ORF044-like protein complement(2116032..2116517) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914443 YP_494611.1 CDS SAUSA300_1960 NC_007793.1 2116730 2117650 R identified by match to protein family HMM PF03837; match to protein family HMM TIGR00616; putative phage-related DNA recombination protein complement(2116730..2117650) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913275 YP_494612.1 CDS SAUSA300_1961 NC_007793.1 2117652 2119607 R phiPVL ORF41-like protein complement(2117652..2119607) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913732 YP_494613.1 CDS SAUSA300_1962 NC_007793.1 2119876 2120136 R identified by match to protein family HMM PF06531; phiPVL ORF39-like protein complement(2119876..2120136) Staphylococcus aureus subsp. aureus USA300_FPR3757 3912799 YP_494614.1 CDS SAUSA300_1963 NC_007793.1 2120176 2120436 R hypothetical protein complement(2120176..2120436) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914867 YP_494615.1 CDS SAUSA300_1964 NC_007793.1 2120689 2121009 R identified by match to protein family HMM PF05595; hypothetical protein complement(2120689..2121009) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913217 YP_494616.1 CDS SAUSA300_1965 NC_007793.1 2121059 2121298 D hypothetical protein 2121059..2121298 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914407 YP_494617.1 CDS SAUSA300_1966 NC_007793.1 2121487 2122239 R identified by match to protein family HMM PF03374; phi77 ORF014-like protein, phage anti-repressor protein complement(2121487..2122239) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914964 YP_494618.1 CDS SAUSA300_1967 NC_007793.1 2122290 2122619 D hypothetical protein 2122290..2122619 Staphylococcus aureus subsp. aureus USA300_FPR3757 3915216 YP_494619.1 CDS SAUSA300_1968 NC_007793.1 2122839 2123288 R identified by match to protein family HMM PF01381; putative phage transcriptional regulator complement(2122839..2123288) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913211 YP_494620.1 CDS SAUSA300_1969 NC_007793.1 2123236 2123949 D identified by match to protein family HMM PF00717; match to protein family HMM PF01381; phi77 ORF011-like protein, phage transcriptional repressor 2123236..2123949 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913670 YP_494621.1 CDS SAUSA300_1970 NC_007793.1 2123965 2124897 D identified by match to protein family HMM PF00929; putative exonuclease 2123965..2124897 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913570 YP_494622.1 CDS SAUSA300_1971 NC_007793.1 2125708 2126421 D phi77 ORF017-like protein 2125708..2126421 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913892 YP_494623.1 CDS int NC_007793.1 2126612 2127649 D identified by match to protein family HMM PF00589; integrase 2126612..2127649 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913459 YP_494624.1 CDS SAUSA300_1973 NC_007793.1 2127706 2128530 D identified by match to protein family HMM PF03372; truncated beta-hemolysin 2127706..2128530 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913490 YP_494625.1 CDS SAUSA300_1974 NC_007793.1 2128768 2129784 R identified by match to protein family HMM PF07968; match to protein family HMM TIGR01002; leukocidin/hemolysin toxin family protein complement(2128768..2129784) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913314 YP_494626.1 CDS SAUSA300_1975 NC_007793.1 2129806 2130861 R identified by match to protein family HMM PF07968; Aerolysin/leukocidin family protein complement(2129806..2130861) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914314 YP_494627.1 CDS SAUSA300_1976 NC_007793.1 2131296 2132519 D dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica.; succinyl-diaminopimelate desuccinylase 2131296..2132519 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913601 YP_494628.1 CDS SAUSA300_1977 NC_007793.1 2132891 2133736 R hypothetical protein complement(2132891..2133736) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913894 YP_494629.1 CDS SAUSA300_1978 NC_007793.1 2133798 2134709 R identified by match to protein family HMM PF01497; ferric hydroxamate receptor complement(2133798..2134709) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913731 YP_494630.1 CDS SAUSA300_1979 NC_007793.1 2134870 2136177 D identified by match to protein family HMM PF02386; cation transport family protein 2134870..2136177 Staphylococcus aureus subsp. aureus USA300_FPR3757 3912842 YP_494631.1 CDS SAUSA300_1980 NC_007793.1 2137030 2137473 R identified by match to protein family HMM PF00583; acetyltransferase complement(2137030..2137473) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914583 YP_494632.1 CDS SAUSA300_1981 NC_007793.1 2138333 2138923 R identified by match to protein family HMM PF03592; phage terminase family protein complement(2138333..2138923) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914050 YP_494633.1 CDS groEL NC_007793.1 2139834 2141450 R 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; chaperonin GroEL complement(2139834..2141450) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914194 YP_494634.1 CDS groES NC_007793.1 2141526 2141810 R 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; co-chaperonin GroES complement(2141526..2141810) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914372 YP_494635.1 CDS SAUSA300_1984 NC_007793.1 2141985 2142728 D identified by match to protein family HMM PF02517; hypothetical protein 2141985..2142728 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913770 YP_494636.1 CDS sdrH NC_007793.1 2142753 2144006 R serine-aspartate repeat-containing protein SdrH complement(2142753..2144006) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914618 YP_494637.1 CDS SAUSA300_1986 NC_007793.1 2144203 2144829 D identified by match to protein family HMM PF00881; hypothetical protein 2144203..2144829 Staphylococcus aureus subsp. aureus USA300_FPR3757 3912905 YP_494638.1 CDS SAUSA300_1987 NC_007793.1 2145190 2145975 D identified by match to protein family HMM PF00795; carbon-nitrogen family hydrolase 2145190..2145975 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914592 YP_494639.1 CDS SAUSA300_1988 NC_007793.1 2146572 2146706 R Lyses erythrocytes and other mammalian cells; delta-hemolysin complement(2146572..2146706) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914816 YP_494640.1 CDS agrB NC_007793.1 2146942 2147511 D identified by match to protein family HMM PF04647; accessory gene regulator protein B 2146942..2147511 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914498 YP_494641.1 CDS agrD NC_007793.1 2147508 2147648 D identified by match to protein family HMM PF05931; accessory gene regulator protein D 2147508..2147648 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913149 YP_494642.1 CDS agrC NC_007793.1 2147721 2148965 D accessory gene regulator protein C 2147721..2148965 Staphylococcus aureus subsp. aureus USA300_FPR3757 3915325 YP_494643.1 CDS agrA NC_007793.1 2149074 2149700 D identified by match to protein family HMM PF00072; match to protein family HMM PF04397; accessory gene regulator protein A 2149074..2149700 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914391 YP_494644.1 CDS SAUSA300_1993 NC_007793.1 2150067 2151026 R identified by match to protein family HMM PF00294; PfkB family kinase complement(2150067..2151026) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914698 YP_494645.1 CDS scrB NC_007793.1 2151023 2152507 R identified by match to protein family HMM PF00251; match to protein family HMM TIGR01322; sucrose-6-phosphate hydrolase complement(2151023..2152507) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914253 YP_494646.1 CDS scrR NC_007793.1 2152656 2153606 R identified by match to protein family HMM PF00356; match to protein family HMM PF00532; sucrose operon repressor complement(2152656..2153606) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914304 YP_494647.1 CDS amt NC_007793.1 2153789 2155039 R identified by match to protein family HMM PF00909; match to protein family HMM TIGR00836; ammonium transporter complement(2153789..2155039) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914448 YP_494648.1 CDS SAUSA300_1997 NC_007793.1 2155247 2155471 R identified by match to protein family HMM PF01206; hypothetical protein complement(2155247..2155471) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914394 YP_494649.1 CDS SAUSA300_1998 NC_007793.1 2155531 2156610 R identified by match to protein family HMM PF04143; hypothetical protein complement(2155531..2156610) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915082 YP_494650.1 CDS rex NC_007793.1 2156914 2157549 R modulates transcription in response to the NADH/NAD(+) redox state; redox-sensing transcriptional repressor Rex complement(2156914..2157549) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913742 YP_494651.1 CDS vga NC_007793.1 2157802 2159730 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 2157802..2159730 Staphylococcus aureus subsp. aureus USA300_FPR3757 3912863 YP_494652.1 CDS SAUSA300_2001 NC_007793.1 2160091 2161701 D identified by match to protein family HMM PF00488; DNA mismatch repair protein-like protein 2160091..2161701 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914539 YP_494653.1 CDS SAUSA300_2002 NC_007793.1 2161803 2162828 R in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity; putative DNA-binding/iron metalloprotein/AP endonuclease complement(2161803..2162828) Staphylococcus aureus subsp. aureus USA300_FPR3757 3912956 YP_494654.1 CDS rimI NC_007793.1 2162821 2163285 R identified by match to protein family HMM PF00583; match to protein family HMM TIGR01575; ribosomal-protein-alanine acetyltransferase complement(2162821..2163285) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914826 YP_494655.1 CDS SAUSA300_2004 NC_007793.1 2163258 2163920 R identified by match to protein family HMM PF00814; hypothetical protein complement(2163258..2163920) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913971 YP_494656.1 CDS SAUSA300_2005 NC_007793.1 2163901 2164335 R identified by match to protein family HMM PF02367; match to protein family HMM TIGR00150; hypothetical protein complement(2163901..2164335) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914442 YP_494657.1 CDS ilvD NC_007793.1 2164873 2166561 D catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis; dihydroxy-acid dehydratase 2164873..2166561 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914685 YP_494658.1 CDS ilvB NC_007793.1 2166589 2168358 D identified by match to protein family HMM PF00205; match to protein family HMM PF02775; match to protein family HMM PF02776; match to protein family HMM TIGR00118; acetolactate synthase large subunit 2166589..2168358 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913788 YP_494659.1 CDS ilvN NC_007793.1 2168358 2168612 D with IlvI catalyzes the formation of 2-acetolactate from pyruvate, this subunit subunit is required for full activity and valine sensitivity; also known as acetolactate synthase small; acetolactate synthase 1 regulatory subunit 2168358..2168612 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913984 YP_494660.1 CDS ilvC NC_007793.1 2168749 2169753 D catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis; ketol-acid reductoisomerase 2168749..2169753 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914079 YP_494661.1 CDS leuA NC_007793.1 2169783 2171312 D catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis; 2-isopropylmalate synthase 2169783..2171312 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913809 YP_494662.1 CDS leuB NC_007793.1 2171315 2172361 D catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis; 3-isopropylmalate dehydrogenase 2171315..2172361 Staphylococcus aureus subsp. aureus USA300_FPR3757 3915080 YP_494663.1 CDS leuC NC_007793.1 2172375 2173745 D dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate; isopropylmalate isomerase large subunit 2172375..2173745 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913630 YP_494664.1 CDS leuD NC_007793.1 2173746 2174318 D catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D; isopropylmalate isomerase small subunit 2173746..2174318 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913544 YP_494665.1 CDS ilvA NC_007793.1 2174333 2175601 D catalyzes the formation of 2-oxobutanoate from L-threonine; biosynthetic; threonine dehydratase 2174333..2175601 Staphylococcus aureus subsp. aureus USA300_FPR3757 3915391 YP_494666.1 CDS SAUSA300_2020 NC_007793.1 2181964 2182419 R identified by match to protein family HMM PF03926; hypothetical protein complement(2181964..2182419) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914909 YP_494667.1 CDS SAUSA300_2021 NC_007793.1 2182412 2184562 R identified by match to protein family HMM PF00575; S1 RNA-binding domain-containing protein complement(2182412..2184562) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913423 YP_494668.1 CDS rpoF NC_007793.1 2184996 2185766 R sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma B is not essential for sporulation; rather it is required for maximal expression of ctc and csbA which are transcribed in the early stationary phase under conditions inimical to sporulation; induced by heat shock, salt stress, oxidative stress, glucose limitation, oxygen limitation and entry into stationary phase; RNA polymerase sigma factor SigB complement(2184996..2185766) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914516 YP_494669.1 CDS rsbW NC_007793.1 2185741 2186220 R binds to sigma-B preventing the formation of an RNA polymerase holoenzyme; serine-protein kinase RsbW complement(2185741..2186220) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913800 YP_494670.1 CDS rsbV NC_007793.1 2186222 2186548 R identified by match to protein family HMM PF01740; match to protein family HMM TIGR00377; anti-sigma-B factor, antagonist complement(2186222..2186548) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915237 YP_494671.1 CDS rsbU NC_007793.1 2186667 2187668 R identified by match to protein family HMM PF07228; sigma-B regulation protein complement(2186667..2187668) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914454 YP_494672.1 CDS SAUSA300_2026 NC_007793.1 2188018 2188380 R identified by match to protein family HMM PF02452; PemK family protein complement(2188018..2188380) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913011 YP_494673.1 CDS alr NC_007793.1 2188632 2189780 R identified by match to protein family HMM PF00842; match to protein family HMM PF01168; match to protein family HMM TIGR00492; alanine racemase complement(2188632..2189780) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913935 YP_494674.1 CDS acpS NC_007793.1 2189846 2190205 R Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids; 4'-phosphopantetheinyl transferase complement(2189846..2190205) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913057 YP_494675.1 CDS SAUSA300_2029 NC_007793.1 2190209 2190700 R identified by match to protein family HMM PF03703; hypothetical protein complement(2190209..2190700) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913651 YP_494676.1 CDS SAUSA300_2030 NC_007793.1 2190687 2192270 R identified by match to protein family HMM PF03703; hypothetical protein complement(2190687..2192270) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913991 YP_494677.1 CDS SAUSA300_2031 NC_007793.1 2192263 2192742 R hypothetical protein complement(2192263..2192742) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914623 YP_494678.1 CDS kdpC NC_007793.1 2192950 2193510 R one of the components of the high-affinity ATP-driven potassium transport (or KDP)system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions; the C subunit may be involved in assembly of the KDP complex; potassium-transporting ATPase subunit C complement(2192950..2193510) Staphylococcus aureus subsp. aureus USA300_FPR3757 3912914 YP_494679.1 CDS kdpB NC_007793.1 2193530 2195503 R One of the components of the high-affinity ATP-driven potassium transport (or KDP) system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions; potassium-transporting ATPase subunit B complement(2193530..2195503) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913278 YP_494680.1 CDS kdpA NC_007793.1 2195576 2197252 R catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions; potassium-transporting ATPase subunit A complement(2195576..2197252) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914756 YP_494681.1 CDS kdpD NC_007793.1 2197524 2200181 D identified by match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM PF02702; sensor histidine kinase, KdpD 2197524..2200181 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914868 YP_494682.1 CDS kdpE NC_007793.1 2200181 2200876 D identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator, KdpE 2200181..2200876 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913790 YP_494683.1 CDS SAUSA300_2037 NC_007793.1 2201245 2202765 R identified by match to protein family HMM PF00270; match to protein family HMM PF00271; ATP-dependent RNA helicase complement(2201245..2202765) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914675 YP_494684.1 CDS murF NC_007793.1 2203282 2204640 R identified by match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM TIGR01143; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase complement(2203282..2204640) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913590 YP_494685.1 CDS ddl NC_007793.1 2204655 2205725 R D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; D-alanyl-alanine synthetase A complement(2204655..2205725) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914827 YP_494686.1 CDS SAUSA300_2040 NC_007793.1 2206043 2207245 D identified by match to protein family HMM PF01098; hypothetical protein 2206043..2207245 Staphylococcus aureus subsp. aureus USA300_FPR3757 3915011 YP_494687.1 CDS SAUSA300_2041 NC_007793.1 2207509 2207646 R hypothetical protein complement(2207509..2207646) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914163 YP_494688.1 CDS SAUSA300_2042 NC_007793.1 2207774 2207983 R hypothetical protein complement(2207774..2207983) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913965 YP_494689.1 CDS SAUSA300_2043 NC_007793.1 2207995 2208288 R identified by match to protein family HMM PF02583; hypothetical protein complement(2207995..2208288) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914835 YP_494690.1 CDS cls NC_007793.1 2208379 2209938 D identified by match to protein family HMM PF00614; cardiolipin synthetase 2208379..2209938 Staphylococcus aureus subsp. aureus USA300_FPR3757 3912807 YP_494691.1 CDS SAUSA300_2045 NC_007793.1 2209966 2210613 D identified by match to protein family HMM PF01966; HD domain-containing protein 2209966..2210613 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913438 YP_494692.1 CDS oxaA NC_007793.1 2211426 2212298 R identified by match to protein family HMM PF02096; membrane protein oxaA complement(2211426..2212298) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914711 YP_494693.1 CDS thiE NC_007793.1 2212384 2213025 R Condenses 4-methyl-5-(beta-hydroxyethyl)-thiazole monophosphate and 4-amino-5-hydroxymethyl pyrimidine pyrophosphate to form thiamine monophosphate; thiamine-phosphate pyrophosphorylase complement(2212384..2213025) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914397 YP_494694.1 CDS thiM NC_007793.1 2213027 2213818 R catalyzes the formation of 4-methyl-5-(2-phosphoethyl)-thiazole and ADP from 4-methyl-5-(2-hydroxyethyl)-thiazole and ATP; hydroxyethylthiazole kinase complement(2213027..2213818) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915091 YP_494695.1 CDS thiD NC_007793.1 2213802 2214632 R catalyzes the formation of 4-amino-2-methyl-5-diphosphomethylpyrimidine; phosphomethylpyrimidine kinase complement(2213802..2214632) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914256 YP_494696.1 CDS SAUSA300_2050 NC_007793.1 2214625 2215314 R identified by match to protein family HMM PF03070; TENA/THI-4 family protein complement(2214625..2215314) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913682 YP_494697.1 CDS SAUSA300_2051 NC_007793.1 2215700 2216395 R identified by match to protein family HMM PF06737; hypothetical protein complement(2215700..2216395) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913993 YP_494698.1 CDS SAUSA300_2052 NC_007793.1 2216832 2217179 R identified by match to protein family HMM PF00436; single-stranded DNA- binding protein family complement(2216832..2217179) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913251 YP_494699.1 CDS SAUSA300_2053 NC_007793.1 2217373 2217813 D hypothetical protein 2217373..2217813 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913738 YP_494700.1 CDS fabZ NC_007793.1 2217872 2218312 R in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP; (3R)-hydroxymyristoyl-ACP dehydratase complement(2217872..2218312) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913870 YP_494701.1 CDS murA NC_007793.1 2218346 2219611 R adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase complement(2218346..2219611) Staphylococcus aureus subsp. aureus USA300_FPR3757 3912790 YP_494702.1 CDS SAUSA300_2056 NC_007793.1 2219722 2219955 R identified by match to protein family HMM PF06612; match to protein family HMM TIGR02327; hypothetical protein complement(2219722..2219955) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914892 YP_494703.1 CDS atpC NC_007793.1 2220517 2220921 R part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane; F0F1 ATP synthase subunit epsilon complement(2220517..2220921) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914550 YP_494704.1 CDS atpD NC_007793.1 2220941 2222353 R Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; F0F1 ATP synthase subunit beta complement(2220941..2222353) Staphylococcus aureus subsp. aureus USA300_FPR3757 3912957 YP_494705.2 CDS atpG NC_007793.1 2222375 2223241 R Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit; F0F1 ATP synthase subunit gamma complement(2222375..2223241) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915146 YP_494706.1 CDS atpA NC_007793.1 2223272 2224780 R produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; F0F1 ATP synthase subunit alpha complement(2223272..2224780) Staphylococcus aureus subsp. aureus USA300_FPR3757 3912959 YP_494707.1 CDS atpH NC_007793.1 2224802 2225341 R Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex; F0F1 ATP synthase subunit delta complement(2224802..2225341) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915000 YP_494708.1 CDS atpF NC_007793.1 2225341 2225862 R produces ATP from ADP in the presence of a proton gradient across the membrane; subunit B is part of the membrane proton channel; F0F1 ATP synthase subunit B complement(2225341..2225862) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913609 YP_494709.1 CDS atpE NC_007793.1 2226060 2226272 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0; F0F1 ATP synthase subunit C complement(2226060..2226272) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914291 YP_494710.1 CDS atpB NC_007793.1 2226315 2227043 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; F0F1 ATP synthase subunit A complement(2226315..2227043) Staphylococcus aureus subsp. aureus USA300_FPR3757 3912920 YP_494711.1 CDS SAUSA300_2065 NC_007793.1 2227584 2228711 R identified by match to protein family HMM PF02350; match to protein family HMM TIGR00236; UDP-GlcNAc 2-epimerase complement(2227584..2228711) Staphylococcus aureus subsp. aureus USA300_FPR3757 3912922 YP_494712.1 CDS upp NC_007793.1 2228735 2229364 R Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate; uracil phosphoribosyltransferase complement(2228735..2229364) Staphylococcus aureus subsp. aureus USA300_FPR3757 3912769 YP_494713.1 CDS glyA NC_007793.1 2229392 2230630 R catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase complement(2229392..2230630) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915307 YP_494714.1 CDS SAUSA300_2068 NC_007793.1 2230657 2231181 R identified by match to protein family HMM PF04260; match to protein family HMM TIGR01440; hypothetical protein complement(2230657..2231181) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913095 YP_494715.1 CDS SAUSA300_2069 NC_007793.1 2231288 2231707 R identified by match to protein family HMM PF01451; hypothetical protein complement(2231288..2231707) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914055 YP_494716.1 CDS SAUSA300_2070 NC_007793.1 2231704 2232750 R identified by match to protein family HMM PF01300; match to protein family HMM PF03481; match to protein family HMM TIGR00057; hypothetical protein complement(2231704..2232750) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914286 YP_494717.1 CDS SAUSA300_2071 NC_007793.1 2232834 2233586 R identified by match to protein family HMM PF05175; match to protein family HMM TIGR00536; HemK family modification methylase complement(2232834..2233586) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913292 YP_494718.1 CDS prfA NC_007793.1 2233657 2234733 R recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 complement(2233657..2234733) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914615 YP_494719.1 CDS tdk NC_007793.1 2234734 2235333 R catalyzes the formation of thymidine 5'-phosphate from thymidine; thymidine kinase complement(2234734..2235333) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913975 YP_494720.1 CDS rpmE2 NC_007793.1 2235680 2235934 R RpmE2; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster do not have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31 type B complement(2235680..2235934) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914769 YP_494721.1 CDS rho NC_007793.1 2236052 2237368 R An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho complement(2236052..2237368) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913133 YP_494722.1 CDS SAUSA300_2076 NC_007793.1 2237615 2239042 R identified by match to protein family HMM PF00171; aldehyde dehydrogenase family protein complement(2237615..2239042) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913351 YP_494723.1 CDS SAUSA300_2077 NC_007793.1 2239280 2239615 R identified by match to protein family HMM PF01638; hypothetical protein complement(2239280..2239615) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915180 YP_494724.1 CDS murA NC_007793.1 2239704 2240963 R adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase complement(2239704..2240963) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913943 YP_494725.1 CDS fba NC_007793.1 2241429 2242289 R catalyzes the formation of glycerone phosphate and glyceraldehyde 3-phosphate from fructose 1,6, bisphosphate; induced by anaerobic conditions in Bacillus subtilis; fructose-bisphosphate aldolase complement(2241429..2242289) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915385 YP_494726.1 CDS SAUSA300_2080 NC_007793.1 2242507 2243028 D hypothetical protein 2242507..2243028 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914119 YP_494727.1 CDS pyrG NC_007793.1 2243137 2244747 R CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase complement(2243137..2244747) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913508 YP_494728.1 CDS rpoE NC_007793.1 2245083 2245613 R participates in both the initiation and recycling phases of transcription; in the presence of the delta subunit, RNAP displays an increased specificity of transcription, a decreased affinity for nucleic acids, and an increased efficiency of RNA synthesis because of enhanced recycling; DNA-directed RNA polymerase subunit delta complement(2245083..2245613) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914962 YP_494729.1 CDS SAUSA300_2083 NC_007793.1 2245725 2246585 R identified by match to protein family HMM PF00583; acetyltransferase complement(2245725..2246585) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914951 YP_494730.1 CDS coaA NC_007793.1 2247009 2247812 D catalyzes the formation of (R)-4'-phosphopantothenate from (R)-pantothenate in coenzyme A biosynthesis; type II pantothenate kinases are not regulated by feedback inhibition by coenzyme A; pantothenate kinase 2247009..2247812 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914037 YP_494731.1 CDS SAUSA300_2085 NC_007793.1 2247942 2248613 R hypothetical protein complement(2247942..2248613) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915288 YP_494732.1 CDS SAUSA300_2086 NC_007793.1 2249012 2250205 R hypothetical protein complement(2249012..2250205) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913720 YP_494733.1 CDS SAUSA300_2087 NC_007793.1 2250205 2251389 R identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891; putative peptidase complement(2250205..2251389) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914557 YP_494734.1 CDS luxS NC_007793.1 2251700 2252170 D catalyzes the hydrolysis of S-ribosylhomocysteine to homocysteine and autoinducer-2; S-ribosylhomocysteinase 2251700..2252170 Staphylococcus aureus subsp. aureus USA300_FPR3757 3915298 YP_494735.2 CDS pdp NC_007793.1 2252686 2253987 R Catalyzes the reversible phosphorolysis of pyrimidines in the nucleotide synthesis salvage pathway; pyrimidine-nucleoside phosphorylase complement(2252686..2253987) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915249 YP_494736.1 CDS deoC NC_007793.1 2254266 2254928 R catalyzes the formation of D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-D-ribose-5-phosphate; deoxyribose-phosphate aldolase complement(2254266..2254928) Staphylococcus aureus subsp. aureus USA300_FPR3757 3912824 YP_494737.1 CDS deoD NC_007793.1 2255243 2255953 D catalyzes the reversible phosphorolysis of ribonucleosides and 2'- deoxyribonucleosides to the free base and (2'-deoxy)ribose-1- phosphate; purine nucleoside phosphorylase 2255243..2255953 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913113 YP_494738.1 CDS dps NC_007793.1 2256074 2256517 R identified by match to protein family HMM PF00210; general stress protein 20U complement(2256074..2256517) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914852 YP_494739.1 CDS SAUSA300_2093 NC_007793.1 2256717 2257130 R identified by match to protein family HMM PF04134; hypothetical protein complement(2256717..2257130) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913215 YP_494740.1 CDS SAUSA300_2094 NC_007793.1 2257588 2258961 R hypothetical protein complement(2257588..2258961) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914609 YP_494741.1 CDS SAUSA300_2095 NC_007793.1 2259633 2259863 R hypothetical protein complement(2259633..2259863) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913477 YP_494742.1 CDS manA NC_007793.1 2259894 2260832 R identified by match to protein family HMM PF01238; match to protein family HMM TIGR00218; mannose-6-phosphate isomerase complement(2259894..2260832) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913792 YP_494743.1 CDS SAUSA300_2097 NC_007793.1 2261267 2261932 R identified by match to protein family HMM PF01370; hypothetical protein complement(2261267..2261932) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913795 YP_494744.1 CDS arsR NC_007793.1 2262084 2262404 D identified by match to protein family HMM PF01022; ArsR family transcriptional regulator 2262084..2262404 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913856 YP_494745.1 CDS SAUSA300_2099 NC_007793.1 2262406 2263386 D identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297; cation efflux family protein 2262406..2263386 Staphylococcus aureus subsp. aureus USA300_FPR3757 3915118 YP_494746.1 CDS SAUSA300_2100 NC_007793.1 2263652 2264743 D lytic regulatory protein 2263652..2264743 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914319 YP_494747.1 CDS SAUSA300_2101 NC_007793.1 2266034 2267170 R SAP domain-containing protein complement(2266034..2267170) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913030 YP_494748.1 CDS SAUSA300_2102 NC_007793.1 2268256 2269113 R identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484; haloacid dehalogenase-like hydrolase complement(2268256..2269113) Staphylococcus aureus subsp. aureus USA300_FPR3757 3912960 YP_494749.1 CDS SAUSA300_2103 NC_007793.1 2269181 2269963 R identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein complement(2269181..2269963) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913358 YP_494750.1 CDS glmS NC_007793.1 2270195 2272000 R Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source; glucosamine--fructose-6-phosphate aminotransferase complement(2270195..2272000) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915098 YP_494751.1 CDS mtlF NC_007793.1 2272681 2274219 D identified by match to protein family HMM PF02302; match to protein family HMM PF02378; match to protein family HMM TIGR00851; PTS system, mannitol specific IIBC component 2272681..2274219 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913875 YP_494752.1 CDS SAUSA300_2106 NC_007793.1 2274254 2276386 D identified by match to protein family HMM PF00874; match to protein family HMM PF05043; putative transcriptional regulator 2274254..2276386 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913105 YP_494753.1 CDS mtlA NC_007793.1 2276398 2276832 D identified by match to protein family HMM PF00359; PTS system, mannitol specific IIA component 2276398..2276832 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914115 YP_494754.1 CDS mtlD NC_007793.1 2276832 2277938 D identified by match to protein family HMM PF01232; match to protein family HMM PF08125; mannitol-1-phosphate 5-dehydrogenase 2276832..2277938 Staphylococcus aureus subsp. aureus USA300_FPR3757 3915110 YP_494755.1 CDS fmtB NC_007793.1 2278257 2282138 R identified by match to protein family HMM PF07564; match to protein family HMM TIGR01167; truncated FmtB protein complement(2278257..2282138) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913009 YP_494756.1 CDS fmtB NC_007793.1 2282385 2285693 R identified by match to protein family HMM PF04650; match to protein family HMM PF07564; match to protein family HMM TIGR01168; truncated FmtB protein complement(2282385..2285693) Staphylococcus aureus subsp. aureus USA300_FPR3757 3912878 YP_494757.1 CDS glmM NC_007793.1 2285970 2287325 R catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; phosphoglucosamine mutase complement(2285970..2287325) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913543 YP_494758.1 CDS SAUSA300_2112 NC_007793.1 2287352 2288284 R identified by match to protein family HMM PF07949; hypothetical protein complement(2287352..2288284) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914984 YP_494759.1 CDS SAUSA300_2113 NC_007793.1 2288286 2289095 R identified by match to protein family HMM PF02457; match to protein family HMM TIGR00159; hypothetical protein complement(2288286..2289095) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913185 YP_494760.1 CDS rocF NC_007793.1 2289284 2290192 R identified by match to protein family HMM PF00491; match to protein family HMM TIGR01229; arginase complement(2289284..2290192) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914166 YP_494761.1 CDS tnp NC_007793.1 2290382 2291620 D identified by match to protein family HMM PF01610; IS1181, transposase 2290382..2291620 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914403 YP_494762.1 CDS SAUSA300_2125 NC_007793.1 2298031 2299035 R ATP-binding Mrp/Nbp35 family protein complement(2298031..2299035) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914996 YP_494763.1 CDS SAUSA300_2126 NC_007793.1 2299243 2300685 R identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711; EmrB/QacA family drug resistance transporter complement(2299243..2300685) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913346 YP_494764.1 CDS SAUSA300_2127 NC_007793.1 2301007 2301480 R hypothetical protein complement(2301007..2301480) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914282 YP_494765.1 CDS SAUSA300_2128 NC_007793.1 2301579 2302922 R identified by match to protein family HMM PF07690; putative drug transporter complement(2301579..2302922) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914047 YP_494766.1 CDS SAUSA300_2129 NC_007793.1 2303099 2303782 R identified by match to protein family HMM PF03006; match to protein family HMM TIGR01065; putative hemolysin III complement(2303099..2303782) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913655 YP_494767.1 CDS SAUSA300_2130 NC_007793.1 2303801 2304988 R identified by match to protein family HMM PF01704; UTP-glucose-1-phosphate uridylyltransferase family protein complement(2303801..2304988) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914488 YP_494768.1 CDS SAUSA300_2131 NC_007793.1 2305032 2305547 R identified by match to protein family HMM PF04307; hypothetical protein complement(2305032..2305547) Staphylococcus aureus subsp. aureus USA300_FPR3757 3912987 YP_494769.1 CDS SAUSA300_2132 NC_007793.1 2305724 2305984 D hypothetical protein 2305724..2305984 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914017 YP_494770.1 CDS SAUSA300_2133 NC_007793.1 2306116 2307432 R identified by match to protein family HMM PF07670; transporter gate domain-containing protein complement(2306116..2307432) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913977 YP_494771.1 CDS SAUSA300_2134 NC_007793.1 2307722 2308690 R identified by match to protein family HMM PF01032; iron compound ABC transporter permease complement(2307722..2308690) Staphylococcus aureus subsp. aureus USA300_FPR3757 3912881 YP_494772.1 CDS SAUSA300_2135 NC_007793.1 2308687 2309718 R identified by match to protein family HMM PF01032; iron compound ABC transporter permease complement(2308687..2309718) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913785 YP_494773.1 CDS SAUSA300_2136 NC_007793.1 2309730 2310713 R identified by match to protein family HMM PF01497; iron compound ABC transporter iron compound-binding protein complement(2309730..2310713) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915398 YP_494774.1 CDS SAUSA300_2137 NC_007793.1 2311105 2312175 R identified by match to protein family HMM PF01168; hypothetical protein complement(2311105..2312175) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914080 YP_494775.1 CDS SAUSA300_2138 NC_007793.1 2312182 2313939 R identified by match to protein family HMM PF04183; hypothetical protein complement(2312182..2313939) Staphylococcus aureus subsp. aureus USA300_FPR3757 3912827 YP_494776.1 CDS SAUSA300_2139 NC_007793.1 2313926 2315119 R identified by match to protein family HMM PF05977; match to protein family HMM PF07690; putative transporter complement(2313926..2315119) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915219 YP_494777.1 CDS SAUSA300_2140 NC_007793.1 2315221 2317197 D identified by match to protein family HMM PF04183; hypothetical protein 2315221..2317197 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913288 YP_494778.1 CDS asp23 NC_007793.1 2319313 2319822 R identified by match to protein family HMM PF03780; alkaline shock protein 23 complement(2319313..2319822) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913176 YP_494779.1 CDS SAUSA300_2143 NC_007793.1 2319885 2320124 R hypothetical protein complement(2319885..2320124) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914657 YP_494780.1 CDS SAUSA300_2144 NC_007793.1 2320137 2320685 R hypothetical protein complement(2320137..2320685) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914274 YP_494781.1 CDS SAUSA300_2145 NC_007793.1 2320848 2322410 R identified by match to protein family HMM PF02028; match to protein family HMM TIGR00842; glycine betaine transporter complement(2320848..2322410) Staphylococcus aureus subsp. aureus USA300_FPR3757 3912836 YP_494782.1 CDS SAUSA300_2146 NC_007793.1 2322717 2323718 R identified by match to protein family HMM PF00107; alcohol dehydrogenase, zinc-containing complement(2322717..2323718) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914517 YP_494783.1 CDS SAUSA300_2147 NC_007793.1 2323952 2324953 R identified by match to protein family HMM PF00107; alcohol dehydrogenase, zinc-containing complement(2323952..2324953) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913998 YP_494784.1 CDS SAUSA300_2148 NC_007793.1 2325236 2326105 R identified by match to protein family HMM PF06028; hypothetical protein complement(2325236..2326105) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913160 YP_494785.1 CDS lacG NC_007793.1 2326371 2327783 R catalyzes the formation of 6-phospho-galactose from a 6-phospho-beta-galactoside; 6-phospho-beta-galactosidase complement(2326371..2327783) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915253 YP_494786.1 CDS lacE NC_007793.1 2327801 2329513 R identified by match to protein family HMM PF02302; match to protein family HMM PF02378; match to protein family HMM TIGR00394; match to protein family HMM TIGR00410; match to protein family HMM TIGR00853; PTS system, lactose-specific IIBC component complement(2327801..2329513) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913245 YP_494787.1 CDS lacF NC_007793.1 2329519 2329830 R identified by match to protein family HMM PF02255; match to protein family HMM TIGR00823; PTS system, lactose-specific IIA component complement(2329519..2329830) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913262 YP_494788.1 CDS lacD NC_007793.1 2329852 2330832 R catalyzes the reversible reaction of dihydroxyacetone phosphate with glyceraldehyde 3-phosphate to produce tagatose 1,6-bisphosphate; in Streptococcus pyogenes there are two paralogs of tagatose-bisphosphate aldolase, encoded by lacD1 and lacD2; expression of lacD1 is highly regulated by environmental conditions while lacD2 specializes in an efficient utilization of carbohydrate sources; tagatose 1,6-diphosphate aldolase complement(2329852..2330832) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913851 YP_494789.1 CDS lacC NC_007793.1 2330836 2331768 R catalyzes the formation of tagatose 1,6-bisphosphate from tagatose 6-phosphate and ATP; tagatose-6-phosphate kinase complement(2330836..2331768) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913708 YP_494790.1 CDS lacB NC_007793.1 2331781 2332296 R catalyzes the interconversion of galactose 6-phosphate to tagatose 6-phosphate; galactose-6-phosphate isomerase subunit LacB complement(2331781..2332296) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915291 YP_494791.1 CDS lacA NC_007793.1 2332312 2332740 R catalyzes the interconversion of galactose 6-phosphate to tagatose 6-phosphate; tagatose pathway for galactose utilization; galactose-6-phosphate isomerase subunit LacA complement(2332312..2332740) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914500 YP_494792.1 CDS SAUSA300_2156 NC_007793.1 2333108 2333863 R identified by match to protein family HMM PF00455; match to protein family HMM PF08220; lactose phosphotransferase system repressor complement(2333108..2333863) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913677 YP_494793.1 CDS SAUSA300_2157 NC_007793.1 2334114 2334845 D Modulates the activities of several enzymes which are inactive in their acetylated form; NAD-dependent deacetylase 2334114..2334845 Staphylococcus aureus subsp. aureus USA300_FPR3757 3915293 YP_494794.1 CDS SAUSA300_2158 NC_007793.1 2335136 2335570 R hypothetical protein complement(2335136..2335570) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913147 YP_494795.1 CDS SAUSA300_2159 NC_007793.1 2336350 2337198 R identified by match to protein family HMM PF00248; aldo/keto reductase family protein complement(2336350..2337198) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914948 YP_494796.1 CDS SAUSA300_2160 NC_007793.1 2337268 2337684 R identified by match to protein family HMM PF00376; MerR family transcriptional regulator complement(2337268..2337684) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914405 YP_494797.1 CDS hysA NC_007793.1 2338092 2340515 D identified by match to protein family HMM PF02278; match to protein family HMM PF02884; match to protein family HMM PF08124; hyaluronate lyase 2338092..2340515 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913476 YP_494798.1 CDS SAUSA300_2162 NC_007793.1 2340575 2341429 R identified by match to protein family HMM PF01551; M23/M37 peptidase domain-containing protein complement(2340575..2341429) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913986 YP_494799.1 CDS SAUSA300_2163 NC_007793.1 2341640 2342455 R identified by match to protein family HMM PF05116; match to protein family HMM TIGR01484; hypothetical protein complement(2341640..2342455) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913897 YP_494800.1 CDS SAUSA300_2164 NC_007793.1 2342749 2343174 D identified by match to protein family HMM PF03642; hypothetical protein 2342749..2343174 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913831 YP_494801.1 CDS budA NC_007793.1 2343538 2344242 R identified by match to protein family HMM PF03306; match to protein family HMM TIGR01252; alpha-acetolactate decarboxylase complement(2343538..2344242) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915125 YP_494802.1 CDS alsS NC_007793.1 2344279 2345943 R catalyzes the formation of 2-acetolactate from pyruvate in stationary phase; acetolactate synthase complement(2344279..2345943) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913784 YP_494803.1 CDS SAUSA300_2167 NC_007793.1 2347133 2348539 R hypothetical protein complement(2347133..2348539) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915115 YP_494804.1 CDS SAUSA300_2168 NC_007793.1 2348668 2349804 R identified by match to protein family HMM PF07724; hypothetical protein complement(2348668..2349804) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914210 YP_494805.1 CDS SAUSA300_2169 NC_007793.1 2349805 2350596 R hypothetical protein complement(2349805..2350596) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913339 YP_494806.1 CDS rpsI NC_007793.1 2352541 2352939 R forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 complement(2352541..2352939) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913018 YP_494807.1 CDS rplM NC_007793.1 2352953 2353390 R in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 complement(2352953..2353390) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914742 YP_494808.1 CDS truA NC_007793.1 2353630 2354433 R mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability; tRNA pseudouridine synthase A complement(2353630..2354433) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915365 YP_494809.1 CDS SAUSA300_2174 NC_007793.1 2354438 2355244 R identified by match to protein family HMM PF02361; cobalt transport family protein complement(2354438..2355244) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913411 YP_494810.1 CDS cbiO NC_007793.1 2355234 2356094 R with CbiNQ forms the ABC transporter for cobalt import; Staphylococcus has two adjacent copies of this gene; cobalt transporter ATP-binding subunit complement(2355234..2356094) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915408 YP_494811.1 CDS cbiO NC_007793.1 2356091 2356900 R with CbiNQ forms the ABC transporter for cobalt import; Staphylococcus has two adjacent copies of this gene; cobalt transporter ATP-binding subunit complement(2356091..2356900) Staphylococcus aureus subsp. aureus USA300_FPR3757 3912969 YP_494812.1 CDS rplQ NC_007793.1 2357438 2357806 R is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 complement(2357438..2357806) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914436 YP_494813.1 CDS rpoA NC_007793.1 2357823 2358767 R catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha complement(2357823..2358767) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914331 YP_494814.1 CDS rpsK NC_007793.1 2358842 2359231 R located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 complement(2358842..2359231) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913092 YP_494815.1 CDS rpsM NC_007793.1 2359255 2359620 R located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 complement(2359255..2359620) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913835 YP_494816.1 CDS rpmJ NC_007793.1 2359643 2359756 R smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif; 50S ribosomal protein L36 complement(2359643..2359756) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913764 YP_494817.1 CDS infA NC_007793.1 2359788 2360006 R stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 complement(2359788..2360006) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914265 YP_494818.1 CDS adk NC_007793.1 2360199 2360846 R essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; adenylate kinase complement(2360199..2360846) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914772 YP_494819.1 CDS secY NC_007793.1 2360863 2362155 R forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY complement(2360863..2362155) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914838 YP_494820.1 CDS rplO NC_007793.1 2362155 2362595 R late assembly protein; 50S ribosomal protein L15 complement(2362155..2362595) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914761 YP_494821.1 CDS rpmD NC_007793.1 2362612 2362791 R L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7; 50S ribosomal protein L30 complement(2362612..2362791) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914246 YP_494822.1 CDS rpsE NC_007793.1 2362808 2363308 R located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 complement(2362808..2363308) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914954 YP_494823.1 CDS rplR NC_007793.1 2363329 2363688 R binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 complement(2363329..2363688) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915215 YP_494824.1 CDS rplF NC_007793.1 2363719 2364255 R ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 complement(2363719..2364255) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914373 YP_494825.1 CDS rpsH NC_007793.1 2364280 2364678 R binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 complement(2364280..2364678) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914001 YP_494826.2 CDS rpsN NC_007793.1 2364710 2364895 R located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group appear to contain the zinc-binding motif; 30S ribosomal protein S14 complement(2364710..2364895) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914991 YP_494827.1 CDS rplE NC_007793.1 2364918 2365457 R part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 complement(2364918..2365457) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913235 YP_494828.1 CDS rplX NC_007793.1 2365484 2365801 R assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 complement(2365484..2365801) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914165 YP_494829.1 CDS rplN NC_007793.1 2365837 2366205 R binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 complement(2365837..2366205) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913593 YP_494830.1 CDS rpsQ NC_007793.1 2366237 2366500 R primary binding protein; helps mediate assembly; involved in translation fidelity; 30S ribosomal protein S17 complement(2366237..2366500) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913510 YP_494831.1 CDS rpmC NC_007793.1 2366524 2366745 R one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29 complement(2366524..2366745) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914223 YP_494832.1 CDS rplP NC_007793.1 2366723 2367157 R located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 complement(2366723..2367157) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913816 YP_494833.1 CDS rpsC NC_007793.1 2367160 2367813 R forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 complement(2367160..2367813) Staphylococcus aureus subsp. aureus USA300_FPR3757 3912925 YP_494834.1 CDS rplV NC_007793.1 2367837 2368190 R binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 complement(2367837..2368190) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914725 YP_494835.1 CDS rpsS NC_007793.1 2368219 2368497 R protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 complement(2368219..2368497) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913607 YP_494836.1 CDS rplB NC_007793.1 2368564 2369397 R one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 complement(2368564..2369397) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913818 YP_494837.1 CDS rplW NC_007793.1 2369430 2369705 R binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 complement(2369430..2369705) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914145 YP_494838.1 CDS rplD NC_007793.1 2369705 2370328 R L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 complement(2369705..2370328) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913125 YP_494839.1 CDS rplC NC_007793.1 2370355 2371017 R binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 complement(2370355..2371017) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914885 YP_494840.1 CDS rpsJ NC_007793.1 2371045 2371353 R NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 complement(2371045..2371353) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915319 YP_494841.1 CDS SAUSA300_2206 NC_007793.1 2371710 2372099 D hypothetical protein 2371710..2372099 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914918 YP_494842.1 CDS SAUSA300_2207 NC_007793.1 2372291 2373469 R identified by match to protein family HMM PF00860; match to protein family HMM PF00916; xanthine/uracil permease family protein complement(2372291..2373469) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913046 YP_494843.1 CDS topB NC_007793.1 2373738 2375873 R decatenates replicating daughter chromosomes; DNA topoisomerase III complement(2373738..2375873) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914904 YP_494844.1 CDS SAUSA300_2209 NC_007793.1 2376060 2376947 D identified by match to protein family HMM PF00583; hypothetical protein 2376060..2376947 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914745 YP_494845.1 CDS glcU NC_007793.1 2377128 2377991 D identified by match to protein family HMM PF06800; glucose uptake protein 2377128..2377991 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914158 YP_494846.1 CDS SAUSA300_2211 NC_007793.1 2378410 2379300 R identified by match to protein family HMM PF03547; hypothetical protein complement(2378410..2379300) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915168 YP_494847.1 CDS SAUSA300_2212 NC_007793.1 2379451 2379615 D hypothetical protein 2379451..2379615 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914337 YP_494848.1 CDS SAUSA300_2213 NC_007793.1 2380364 2383531 R identified by match to protein family HMM PF00873; AcrB/AcrD/AcrF family protein complement(2380364..2383531) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913486 YP_494849.1 CDS SAUSA300_2214 NC_007793.1 2383648 2384913 R identified by match to protein family HMM PF02388; FmhB protein complement(2383648..2384913) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914487 YP_494850.1 CDS SAUSA300_2215 NC_007793.1 2385545 2386309 R hypothetical protein complement(2385545..2386309) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913291 YP_494851.1 CDS SAUSA300_2216 NC_007793.1 2386471 2386911 D identified by match to protein family HMM PF01047; MarR family transcriptional regulator 2386471..2386911 Staphylococcus aureus subsp. aureus USA300_FPR3757 3915392 YP_494852.1 CDS SAUSA300_2217 NC_007793.1 2386904 2388115 D identified by match to protein family HMM PF07690; putative drug transporter 2386904..2388115 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913882 YP_494853.1 CDS SAUSA300_2218 NC_007793.1 2388217 2388567 R identified by match to protein family HMM PF01047; match to protein family HMM TIGR01889; hypothetical protein complement(2388217..2388567) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914043 YP_494854.1 CDS moaA NC_007793.1 2389258 2390280 R identified by match to protein family HMM PF04055; match to protein family HMM PF06463; match to protein family HMM TIGR02666; molybdenum cofactor biosynthesis protein A complement(2389258..2390280) Staphylococcus aureus subsp. aureus USA300_FPR3757 3912777 YP_494855.1 CDS mobA NC_007793.1 2390300 2390899 R in Escherichia coli MobA links a guanosine 5'-phosphate to molydopterin to form molybdopterin guanine dinucleotide during molybdenum cofactor biosynthesis; molybdopterin-guanine dinucleotide biosynthesis protein MobA complement(2390300..2390899) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914564 YP_494856.1 CDS moaD NC_007793.1 2390906 2391139 R identified by match to protein family HMM PF02597; match to protein family HMM TIGR01682; molybdopterin converting factor, subunit 1 complement(2390906..2391139) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913257 YP_494857.1 CDS moaE NC_007793.1 2391145 2391591 R identified by match to protein family HMM PF02391; molybdopterin converting factor, subunit 2 complement(2391145..2391591) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914567 YP_494858.1 CDS mobB NC_007793.1 2391605 2392090 R identified by match to protein family HMM PF03205; match to protein family HMM TIGR00176; molybdopterin-guanine dinucleotide biosynthesis protein B complement(2391605..2392090) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913253 YP_494859.1 CDS moeA NC_007793.1 2392087 2393346 R identified by match to protein family HMM PF00994; match to protein family HMM PF03453; match to protein family HMM PF03454; match to protein family HMM TIGR00177; molybdopterin biosynthesis protein A complement(2392087..2393346) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913407 YP_494860.1 CDS moaC NC_007793.1 2393409 2393903 D MoaC; along with MoaA is involved in conversion of a guanosine derivative into molybdopterin precursor Z; involved in molybdenum cofactor biosynthesis; molybdenum cofactor biosynthesis protein MoaC 2393409..2393903 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913690 YP_494861.1 CDS moaB NC_007793.1 2393905 2394411 R identified by match to protein family HMM PF00994; match to protein family HMM TIGR00177; molybdenum cofactor biosynthesis protein B complement(2393905..2394411) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914857 YP_494862.1 CDS moeB NC_007793.1 2394442 2395446 R identified by match to protein family HMM PF00899; match to protein family HMM PF05237; molybdopterin biosynthesis protein B complement(2394442..2395446) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915094 YP_494863.1 CDS modC NC_007793.1 2395616 2396221 R identified by match to protein family HMM PF00005; molybdenum ABC transporter ATP-binding protein ModC complement(2395616..2396221) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914795 YP_494864.1 CDS modB NC_007793.1 2396222 2396893 R identified by match to protein family HMM PF00528; match to protein family HMM TIGR02141; molybdenum ABC transporter permease ModB complement(2396222..2396893) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914656 YP_494865.1 CDS modA NC_007793.1 2396907 2397689 R identified by match to protein family HMM PF01547; match to protein family HMM TIGR01256; molybdenum ABC transporter molybdenum-binding protein ModA complement(2396907..2397689) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915207 YP_494866.1 CDS fdhD NC_007793.1 2397979 2398776 D involved in the production or activity of formate dehydrogenase-H which is active when nitrate is not present during anaerobic growth; formate dehydrogenase accessory protein 2397979..2398776 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913608 YP_494867.1 CDS SAUSA300_2232 NC_007793.1 2398948 2399718 R identified by match to protein family HMM PF00583; acetyltransferase complement(2398948..2399718) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914927 YP_494868.1 CDS SAUSA300_2233 NC_007793.1 2399790 2400344 R identified by match to protein family HMM PF02632; BioY family protein complement(2399790..2400344) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913480 YP_494869.1 CDS SAUSA300_2234 NC_007793.1 2400465 2401406 R identified by match to protein family HMM PF01156; inosine-uridine preferring nucleoside hydrolase complement(2400465..2401406) Staphylococcus aureus subsp. aureus USA300_FPR3757 3912784 YP_494870.1 CDS SAUSA300_2235 NC_007793.1 2401805 2402713 R identified by match to protein family HMM PF01497; iron compound ABC transporter iron compound-binding protein complement(2401805..2402713) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913395 YP_494871.1 CDS SAUSA300_2236 NC_007793.1 2402927 2404081 R identified by match to protein family HMM PF02770; match to protein family HMM PF08028; hypothetical protein complement(2402927..2404081) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913002 YP_494872.1 CDS SAUSA300_2237 NC_007793.1 2404298 2405188 R identified by match to protein family HMM PF03253; putative urea transporter complement(2404298..2405188) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914785 YP_494873.1 CDS ureA NC_007793.1 2405463 2405765 D UreA, with UreB and UreC catalyzes the hydrolysis of urea into ammonia and carbon dioxide; nickel metalloenzyme; accessory proteins UreD, UreE, UreF, and UreG are necessary for assembly of the metallocenter; urease subunit gamma 2405463..2405765 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914334 YP_494874.1 CDS ureB NC_007793.1 2405779 2406189 D ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori and Yersinia enterocolitica the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 UreC (alpha) and 3 UreAB (gamma/beta); in Staphylococcus saprophyticus plays a role in bladder invasiveness and may induce the formation of kidney and bladder stones due to the alkalization of urine; urease subunit beta 2405779..2406189 Staphylococcus aureus subsp. aureus USA300_FPR3757 3912935 YP_494875.1 CDS ureC NC_007793.1 2406186 2407901 D ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 ureC (alpha) and 3 ureAB (gamma/beta) subunits; urease subunit alpha 2406186..2407901 Staphylococcus aureus subsp. aureus USA300_FPR3757 3915389 YP_494876.1 CDS ureE NC_007793.1 2407914 2408366 D involved in the assembly of the urease metallocenter; possible nickel donor; urease accessory protein UreE 2407914..2408366 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914077 YP_494877.1 CDS ureF NC_007793.1 2408359 2409048 D identified by match to protein family HMM PF01730; urease accessory protein UreF 2408359..2409048 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914877 YP_494878.1 CDS ureG NC_007793.1 2409061 2409675 D identified by match to protein family HMM PF02492; match to protein family HMM TIGR00101; urease accessory protein UreG 2409061..2409675 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914096 YP_494879.1 CDS ureD NC_007793.1 2409675 2410511 D identified by match to protein family HMM PF01774; urease accessory protein UreD 2409675..2410511 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914008 YP_494880.1 CDS SAUSA300_2245 NC_007793.1 2410700 2411047 R identified by match to protein family HMM TIGR01889; accessory regulator R complement(2410700..2411047) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914427 YP_494881.1 CDS SAUSA300_2246 NC_007793.1 2411475 2411801 R hypothetical protein complement(2411475..2411801) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913527 YP_494882.1 CDS SAUSA300_2247 NC_007793.1 2411865 2412608 R identified by match to protein family HMM TIGR01889; hypothetical protein complement(2411865..2412608) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914042 YP_494883.1 CDS SAUSA300_2248 NC_007793.1 2412634 2414589 R identified by match to protein family HMM PF00165; AraC family transcriptional regulator complement(2412634..2414589) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914354 YP_494884.1 CDS ssaA NC_007793.1 2415199 2416002 D identified by match to protein family HMM PF05257; secretory antigen precursor SsaA 2415199..2416002 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913090 YP_494885.1 CDS nhaC NC_007793.1 2416435 2417835 R identified by match to protein family HMM PF03553; match to protein family HMM TIGR00931; Na+/H+ antiporter NhaC complement(2416435..2417835) Staphylococcus aureus subsp. aureus USA300_FPR3757 3912882 YP_494886.1 CDS SAUSA300_2251 NC_007793.1 2417930 2419012 R identified by match to protein family HMM PF01210; match to protein family HMM PF02317; dehydrogenase family protein complement(2417930..2419012) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913675 YP_494887.1 CDS SAUSA300_2252 NC_007793.1 2419260 2419682 D hypothetical protein 2419260..2419682 Staphylococcus aureus subsp. aureus USA300_FPR3757 3915043 YP_494888.1 CDS ssaA NC_007793.1 2419919 2420419 D identified by match to protein family HMM PF05257; secretory antigen precursor SsaA 2419919..2420419 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914935 YP_494889.1 CDS SAUSA300_2254 NC_007793.1 2420781 2421734 D identified by match to protein family HMM PF00389; match to protein family HMM PF02826; glycerate dehydrogenase-like protein 2420781..2421734 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913099 YP_494890.1 CDS SAUSA300_2255 NC_007793.1 2421826 2422950 R identified by match to protein family HMM PF01494; hypothetical protein complement(2421826..2422950) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914101 YP_494891.1 CDS SAUSA300_2256 NC_007793.1 2423261 2424037 R identified by match to protein family HMM PF01832; putative N-acetylmuramoyl-L-alanine amidase complement(2423261..2424037) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913502 YP_494892.1 CDS SAUSA300_2257 NC_007793.1 2424520 2424993 R identified by match to protein family HMM PF07849; hypothetical protein complement(2424520..2424993) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913612 YP_494893.1 CDS SAUSA300_2258 NC_007793.1 2424993 2427947 R identified by match to protein family HMM PF00037; match to protein family HMM PF00111; match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; match to protein family HMM TIGR01591; formate dehydrogenase, alpha subunit complement(2424993..2427947) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914062 YP_494894.1 CDS SAUSA300_2259 NC_007793.1 2428549 2429472 R identified by match to protein family HMM PF03816; match to protein family HMM TIGR00350; putative transcriptional regulator complement(2428549..2429472) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915157 YP_494895.1 CDS SAUSA300_2260 NC_007793.1 2429629 2430426 R identified by match to protein family HMM PF00459; inositol monophosphatase family protein complement(2429629..2430426) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914783 YP_494896.1 CDS SAUSA300_2261 NC_007793.1 2430811 2431503 D identified by match to protein family HMM PF08220; hypothetical protein 2430811..2431503 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914473 YP_494897.1 CDS SAUSA300_2263 NC_007793.1 2431859 2432173 D putative transposase 2431859..2432173 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914595 YP_494898.1 CDS SAUSA300_2262 NC_007793.1 2432150 2432887 R identified by match to protein family HMM PF02517; hypothetical protein complement(2432150..2432887) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914744 YP_494899.1 CDS SAUSA300_2264 NC_007793.1 2433701 2434582 D contains one authenticated frameshift mutation; RpiR family phosphosugar-binding transcriptional regulator 2433701..2434582 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913733 YP_494900.1 CDS SAUSA300_2265 NC_007793.1 2434969 2436348 R identified by match to protein family HMM PF00324; putative amino acid permease complement(2434969..2436348) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913200 YP_494901.1 CDS SAUSA300_2266 NC_007793.1 2436628 2436984 D hypothetical protein 2436628..2436984 Staphylococcus aureus subsp. aureus USA300_FPR3757 3912991 YP_494902.1 CDS SAUSA300_2267 NC_007793.1 2437464 2438099 R identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; match to protein family HMM TIGR01549; HAD superfamily hydrolase complement(2437464..2438099) Staphylococcus aureus subsp. aureus USA300_FPR3757 3912804 YP_494903.1 CDS SAUSA300_2268 NC_007793.1 2438174 2439091 R identified by match to protein family HMM PF01758; sodium/bile acid symporter family protein complement(2438174..2439091) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913700 YP_494904.1 CDS SAUSA300_2269 NC_007793.1 2439359 2439889 D identified by similarity to PIR:E90031; hypothetical protein 2439359..2439889 Staphylococcus aureus subsp. aureus USA300_FPR3757 3915075 YP_494905.1 CDS glvC NC_007793.1 2439955 2441559 R identified by match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR02005; PTS system, arbutin-like IIBC component complement(2439955..2441559) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914981 YP_494906.1 CDS SAUSA300_2271 NC_007793.1 2441889 2442653 D identified by match to protein family HMM PF01380; match to protein family HMM PF01418; phosphosugar-binding transcriptional regulator 2441889..2442653 Staphylococcus aureus subsp. aureus USA300_FPR3757 3915374 YP_494907.1 CDS SAUSA300_2272 NC_007793.1 2442711 2443217 R hypothetical protein complement(2442711..2443217) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914870 YP_494908.1 CDS SAUSA300_2273 NC_007793.1 2443384 2444763 R identified by match to protein family HMM PF03553; Na+/H+ antiporter family protein complement(2443384..2444763) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915351 YP_494909.1 CDS SAUSA300_2274 NC_007793.1 2444922 2445491 R hypothetical protein complement(2444922..2445491) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915135 YP_494910.1 CDS SAUSA300_2275 NC_007793.1 2445978 2446859 R identified by match to protein family HMM PF00106; short chain dehydrogenase/reductase family oxidoreductase complement(2445978..2446859) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913102 YP_494911.1 CDS SAUSA300_2276 NC_007793.1 2446970 2448091 R identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891; M20/M25/M40 family peptidase complement(2446970..2448091) Staphylococcus aureus subsp. aureus USA300_FPR3757 3912793 YP_494912.1 CDS hutI NC_007793.1 2448368 2449606 R catalyzing the hydrolysis of 4-imidazolone-5-propionate to N-formimidoyl-L-glutamate, the third step in the histidine degradation pathway; imidazolonepropionase complement(2448368..2449606) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915258 YP_494913.1 CDS hutU NC_007793.1 2449606 2451267 R catalyzes the formation of 4-imidazolone-5-propanoate from urocanate during histidine metabolism; urocanate hydratase complement(2449606..2451267) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914963 YP_494914.1 CDS SAUSA300_2279 NC_007793.1 2451427 2452311 D identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family regulatory protein 2451427..2452311 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913491 YP_494915.1 CDS fosB NC_007793.1 2452433 2452852 D catalyzes resistance to fosfomycin by the addition of a thiol cofactor; fosfomycin resistance protein FosB 2452433..2452852 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913568 YP_494916.1 CDS hutG NC_007793.1 2453108 2454043 R catalyzes the formation of glutamate and formamide from N-formimidoyl-L-glutamate; formimidoylglutamase complement(2453108..2454043) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915063 YP_494917.1 CDS SAUSA300_2282 NC_007793.1 2454333 2455592 D identified by match to protein family HMM PF02517; hypothetical protein 2454333..2455592 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914149 YP_494918.1 CDS rpiA NC_007793.1 2455658 2456344 R catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway; ribose-5-phosphate isomerase A complement(2455658..2456344) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914936 YP_494919.1 CDS SAUSA300_2284 NC_007793.1 2456518 2457171 D identified by match to protein family HMM PF03473; match to protein family HMM PF03475; hypothetical protein 2456518..2457171 Staphylococcus aureus subsp. aureus USA300_FPR3757 3915218 YP_494920.1 CDS galM NC_007793.1 2457407 2458426 R identified by match to protein family HMM PF01263; aldose 1-epimerase complement(2457407..2458426) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914459 YP_494921.1 CDS SAUSA300_2286 NC_007793.1 2458456 2458782 R identified by match to protein family HMM PF02694; hypothetical protein complement(2458456..2458782) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915254 YP_494922.1 CDS SAUSA300_2287 NC_007793.1 2459000 2460232 R hypothetical protein complement(2459000..2460232) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914483 YP_494923.1 CDS SAUSA300_2288 NC_007793.1 2460225 2461124 R identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein complement(2460225..2461124) Staphylococcus aureus subsp. aureus USA300_FPR3757 3912781 YP_494924.1 CDS SAUSA300_2289 NC_007793.1 2461355 2462002 R identified by match to protein family HMM PF05656; hypothetical protein complement(2461355..2462002) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915266 YP_494925.1 CDS SAUSA300_2290 NC_007793.1 2462401 2463009 D identified by match to protein family HMM PF02245; match to protein family HMM TIGR00567; putative 3-methyladenine DNA glycosylase 2462401..2463009 Staphylococcus aureus subsp. aureus USA300_FPR3757 3915061 YP_494926.1 CDS gltS NC_007793.1 2463346 2464554 D identified by match to protein family HMM PF03616; match to protein family HMM TIGR00210; sodium/glutamate symporter 2463346..2464554 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913565 YP_494927.1 CDS fni NC_007793.1 2464602 2465651 R catalyzes the isomerization of isopentenyl pyrophosphate to dimethylallyl diphosphate; isopentenyl pyrophosphate isomerase complement(2464602..2465651) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915142 YP_494928.1 CDS corA NC_007793.1 2465682 2466629 R identified by match to protein family HMM PF01544; magnesium and cobalt transport protein complement(2465682..2466629) Staphylococcus aureus subsp. aureus USA300_FPR3757 3912860 YP_494929.1 CDS SAUSA300_2294 NC_007793.1 2466726 2467217 D hypothetical protein 2466726..2467217 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913787 YP_494930.1 CDS SAUSA300_2295 NC_007793.1 2467214 2467633 D hypothetical protein 2467214..2467633 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913846 YP_494931.1 CDS SAUSA300_2296 NC_007793.1 2467741 2468661 R identified by match to protein family HMM PF07859; esterase-like protein complement(2467741..2468661) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914625 YP_494932.1 CDS SAUSA300_2297 NC_007793.1 2468869 2469507 D hypothetical protein 2468869..2469507 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914691 YP_494933.1 CDS SAUSA300_2298 NC_007793.1 2469753 2471684 R identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711; multidrug resistance protein B, drug resistance transporter complement(2469753..2471684) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913020 YP_494934.1 CDS SAUSA300_2299 NC_007793.1 2471697 2472344 R hypothetical protein complement(2471697..2472344) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913132 YP_494935.1 CDS SAUSA300_2300 NC_007793.1 2472465 2473016 D identified by match to protein family HMM PF00440; TetR family transcriptional regulator 2472465..2473016 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913456 YP_494936.1 CDS tcaB NC_007793.1 2473246 2474454 R identified by match to protein family HMM PF07690; match to protein family HMM TIGR00710; teicoplanin resistance associated membrane protein TcaB protein complement(2473246..2474454) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914585 YP_494937.1 CDS tcaA NC_007793.1 2474723 2476105 R teicoplanin resistance associated membrane protein TcaA protein complement(2474723..2476105) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914747 YP_494938.1 CDS tcaR NC_007793.1 2476345 2476800 R identified by match to protein family HMM PF01047; transcriptional regulator TcaR complement(2476345..2476800) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914106 YP_494939.1 CDS SAUSA300_2304 NC_007793.1 2476995 2477963 D identified by match to protein family HMM PF02698; hypothetical protein 2476995..2477963 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914626 YP_494940.1 CDS SAUSA300_2305 NC_007793.1 2478538 2478894 D identified by similarity to GB:AAO04226.1; transposase, truncation 2478538..2478894 Staphylococcus aureus subsp. aureus USA300_FPR3757 3912876 YP_494941.1 CDS SAUSA300_2306 NC_007793.1 2479034 2479699 R identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein complement(2479034..2479699) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913320 YP_494942.1 CDS SAUSA300_2307 NC_007793.1 2479699 2480754 R identified by match to protein family HMM PF02687; ABC transporter permease complement(2479699..2480754) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914111 YP_494943.1 CDS SAUSA300_2308 NC_007793.1 2480890 2481564 D identified by match to protein family HMM PF00072; match to protein family HMM PF00486; response regulator protein 2480890..2481564 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914878 YP_494944.1 CDS SAUSA300_2309 NC_007793.1 2481557 2482930 D identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; sensor histidine kinase 2481557..2482930 Staphylococcus aureus subsp. aureus USA300_FPR3757 3915399 YP_494945.1 CDS SAUSA300_2310 NC_007793.1 2483093 2483536 D identified by match to protein family HMM PF04397; hypothetical protein 2483093..2483536 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914147 YP_494946.1 CDS SAUSA300_2311 NC_007793.1 2483533 2483988 D hypothetical protein 2483533..2483988 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914074 YP_494947.1 CDS mqo NC_007793.1 2484054 2485589 R malate dehydrogenase; catalyzes the oxidation of malate to oxaloacetate; malate:quinone oxidoreductase complement(2484054..2485589) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913602 YP_494948.1 CDS SAUSA300_2313 NC_007793.1 2485913 2487511 R identified by match to protein family HMM PF02652; match to protein family HMM TIGR00795; L-lactate permease complement(2485913..2487511) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913485 YP_494949.1 CDS SAUSA300_2314 NC_007793.1 2487828 2489501 D hypothetical protein 2487828..2489501 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913719 YP_494950.1 CDS SAUSA300_2315 NC_007793.1 2489654 2490283 R hypothetical protein complement(2489654..2490283) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914451 YP_494951.1 CDS SAUSA300_2316 NC_007793.1 2490597 2491112 R identified by match to protein family HMM PF00583; acetyltransferase complement(2490597..2491112) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913865 YP_494952.1 CDS SAUSA300_2317 NC_007793.1 2491405 2492307 D identified by match to protein family HMM PF00107; putative zinc-binding dehydrogenase 2491405..2492307 Staphylococcus aureus subsp. aureus USA300_FPR3757 3912941 YP_494953.1 CDS SAUSA300_2318 NC_007793.1 2492353 2492754 R identified by match to protein family HMM PF00583; acetyltransferase complement(2492353..2492754) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913295 YP_494954.1 CDS SAUSA300_2319 NC_007793.1 2492790 2493824 R identified by match to protein family HMM PF00070; match to protein family HMM PF03486; match to protein family HMM PF07992; pyridine nucleotide-disulfide oxidoreductase complement(2492790..2493824) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913033 YP_494955.1 CDS SAUSA300_2320 NC_007793.1 2494056 2494487 R hypothetical protein complement(2494056..2494487) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914006 YP_494956.1 CDS SAUSA300_2321 NC_007793.1 2494694 2495971 R identified by match to protein family HMM PF01061; hypothetical protein complement(2494694..2495971) Staphylococcus aureus subsp. aureus USA300_FPR3757 3912774 YP_494957.1 CDS SAUSA300_2322 NC_007793.1 2496132 2496755 D identified by match to protein family HMM PF00440; TetR family transcriptional regulator 2496132..2496755 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914907 YP_494958.1 CDS cobI NC_007793.1 2496801 2497745 D identified by match to protein family HMM PF01544; CorA family protein 2496801..2497745 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913704 YP_494959.1 CDS SAUSA300_2324 NC_007793.1 2497831 2499273 R identified by match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR01996; PTS system, sucrose-specific IIBC component complement(2497831..2499273) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913294 YP_494960.1 CDS SAUSA300_2325 NC_007793.1 2499456 2499839 D hypothetical protein 2499456..2499839 Staphylococcus aureus subsp. aureus USA300_FPR3757 3912820 YP_494961.1 CDS SAUSA300_2326 NC_007793.1 2501327 2503432 D identified by match to protein family HMM PF00165; transcription regulatory protein 2501327..2503432 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914805 YP_494962.1 CDS SAUSA300_2327 NC_007793.1 2503503 2503925 D identified by match to protein family HMM PF01243; hypothetical protein 2503503..2503925 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913967 YP_494963.1 CDS SAUSA300_2328 NC_007793.1 2504190 2504546 D hypothetical protein 2504190..2504546 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913013 YP_494964.1 CDS gltT NC_007793.1 2504950 2506227 R identified by match to protein family HMM PF00375; proton/sodium-glutamate symport protein complement(2504950..2506227) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915264 YP_494965.1 CDS SAUSA300_2330 NC_007793.1 2506409 2506774 R hypothetical protein complement(2506409..2506774) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913360 YP_494966.1 CDS SAUSA300_2331 NC_007793.1 2507172 2507618 D identified by match to protein family HMM PF01047; MarR family transcriptional regulator 2507172..2507618 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913511 YP_494967.1 CDS SAUSA300_2332 NC_007793.1 2507834 2508262 D identified by match to protein family HMM PF00011; heat shock protein 2507834..2508262 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914235 YP_494968.1 CDS narK NC_007793.1 2508369 2509538 R identified by match to protein family HMM PF07690; nitrite extrusion protein complement(2508369..2509538) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914241 YP_494969.1 CDS SAUSA300_2334 NC_007793.1 2509908 2510546 D hypothetical protein 2509908..2510546 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913934 YP_494970.1 CDS SAUSA300_2335 NC_007793.1 2510616 2510822 D authenticated frameshift mutation resulting in a premature stop--the same authenticated frameshift mutation was found in COL; hypothetical protein 2510616..2510822 Staphylococcus aureus subsp. aureus USA300_FPR3757 3915353 YP_494971.1 CDS SAUSA300_2336 NC_007793.1 2510801 2511541 D identified by match to protein family HMM PF00376; match to protein family HMM PF07739; MerR family transcriptional regulator 2510801..2511541 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913221 YP_494972.1 CDS SAUSA300_2337 NC_007793.1 2511799 2512452 R identified by match to protein family HMM PF00072; match to protein family HMM PF00196; DegU family transcriptional regulator complement(2511799..2512452) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913825 YP_494973.1 CDS SAUSA300_2338 NC_007793.1 2512475 2513509 R identified by match to protein family HMM PF02518; match to protein family HMM PF07730; sensor histidine kinase complement(2512475..2513509) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914649 YP_494974.1 CDS SAUSA300_2339 NC_007793.1 2513533 2513985 R hypothetical protein complement(2513533..2513985) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913614 YP_494975.1 CDS narI NC_007793.1 2514005 2514682 R identified by match to protein family HMM PF02665; match to protein family HMM TIGR00351; respiratory nitrate reductase, gamma subunit complement(2514005..2514682) Staphylococcus aureus subsp. aureus USA300_FPR3757 3912900 YP_494976.1 CDS narJ NC_007793.1 2514675 2515265 R identified by match to protein family HMM PF02613; match to protein family HMM TIGR00684; respiratory nitrate reductase, subunit delta complement(2514675..2515265) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913174 YP_494977.1 CDS narH NC_007793.1 2515243 2516688 R identified by match to protein family HMM TIGR01660; respiratory nitrate reductase, beta subunit complement(2515243..2516688) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914277 YP_494978.1 CDS SAUSA300_2343 NC_007793.1 2516792 2520481 R identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM TIGR01580; respiratory nitrate reductase, alpha subunit complement(2516792..2520481) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914523 YP_494979.1 CDS SAUSA300_2344 NC_007793.1 2520790 2521767 R identified by match to protein family HMM PF00590; match to protein family HMM TIGR01469; uroporphyrin-III C-methyl transferase complement(2520790..2521767) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915078 YP_494980.1 CDS nirD NC_007793.1 2521758 2522072 R identified by match to protein family HMM PF00355; match to protein family HMM TIGR02378; nitrite reductase [NAD(P)H], small subunit complement(2521758..2522072) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914311 YP_494981.1 CDS nirB NC_007793.1 2522076 2524481 R identified by match to protein family HMM PF00070; match to protein family HMM PF01077; match to protein family HMM PF03460; match to protein family HMM PF04324; match to protein family HMM PF07992; match to protein family HMM TIGR02374; nitrite reductase [NAD(P)H], large subunit complement(2522076..2524481) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914887 YP_494982.1 CDS nirR NC_007793.1 2524547 2525278 R identified by match to protein family HMM PF01903; nitrite reductase transcriptional regulator NirR complement(2524547..2525278) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914003 YP_494983.1 CDS SAUSA300_2348 NC_007793.1 2525508 2526044 R identified by match to protein family HMM PF00583; hypothetical protein complement(2525508..2526044) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914254 YP_494984.1 CDS SAUSA300_2349 NC_007793.1 2526277 2527101 R identified by match to protein family HMM PF01226; formate/nitrite transporter family protein complement(2526277..2527101) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915308 YP_494985.1 CDS SAUSA300_2350 NC_007793.1 2527584 2528051 R hypothetical protein complement(2527584..2528051) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913982 YP_494986.1 CDS SAUSA300_2351 NC_007793.1 2528237 2529787 R identified by match to protein family HMM PF01297; Zn-binding lipoprotein adcA-like protein complement(2528237..2529787) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913836 YP_494987.1 CDS SAUSA300_2352 NC_007793.1 2530082 2530348 R identified by match to protein family HMM PF06769; match to protein family HMM TIGR02116; addiction module antitoxin complement(2530082..2530348) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915031 YP_494988.1 CDS SAUSA300_2353 NC_007793.1 2530348 2530599 R identified by match to protein family HMM PF02604; match to protein family HMM TIGR01552; hypothetical protein complement(2530348..2530599) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915178 YP_494989.1 CDS SAUSA300_2354 NC_007793.1 2530872 2531471 R putative lipoprotein complement(2530872..2531471) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913576 YP_494990.1 CDS SAUSA300_2355 NC_007793.1 2531490 2531837 R putative lipoprotein complement(2531490..2531837) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914087 YP_494991.1 CDS fmhA NC_007793.1 2532104 2533354 D identified by match to protein family HMM PF02388; fmhA protein 2532104..2533354 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913578 YP_494992.1 CDS SAUSA300_2357 NC_007793.1 2533451 2534182 R identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein complement(2533451..2534182) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914432 YP_494993.1 CDS SAUSA300_2358 NC_007793.1 2534179 2534898 R identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726; ABC transporter permease complement(2534179..2534898) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913496 YP_494994.1 CDS SAUSA300_2359 NC_007793.1 2534879 2535658 R identified by match to protein family HMM PF00497; amino acid ABC transporter amino acid-binding protein complement(2534879..2535658) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914840 YP_494995.1 CDS SAUSA300_2360 NC_007793.1 2535779 2537137 R identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711; multidrug resistance protein complement(2535779..2537137) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913592 YP_494996.1 CDS SAUSA300_2361 NC_007793.1 2537392 2537496 D hypothetical protein 2537392..2537496 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914982 YP_494997.1 CDS gpmA NC_007793.1 2537650 2538336 R 2,3-bisphosphoglycerate-dependent; catalyzes the interconversion of 2-phosphoglycerate to 3-phosphoglycerate; phosphoglyceromutase complement(2537650..2538336) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914213 YP_494998.1 CDS SAUSA300_2363 NC_007793.1 2538663 2539529 R identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297; cation efflux family protein complement(2538663..2539529) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914218 YP_494999.1 CDS sbi NC_007793.1 2540281 2541591 D identified by match to protein family HMM PF02216; IgG-binding protein SBI 2540281..2541591 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914408 YP_495000.1 CDS hlgA NC_007793.1 2542127 2543056 D identified by match to protein family HMM PF07968; match to protein family HMM TIGR01002; gamma-hemolysin component A 2542127..2543056 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914155 YP_495001.1 CDS hlgC NC_007793.1 2543623 2544570 D identified by match to protein family HMM PF07968; match to protein family HMM TIGR01002; gamma-hemolysin component C 2543623..2544570 Staphylococcus aureus subsp. aureus USA300_FPR3757 3915079 YP_495002.1 CDS hlgB NC_007793.1 2544572 2545549 D identified by match to protein family HMM PF07968; match to protein family HMM TIGR01002; gamma-hemolysin component B 2544572..2545549 Staphylococcus aureus subsp. aureus USA300_FPR3757 3912831 YP_495003.1 CDS SAUSA300_2368 NC_007793.1 2545601 2546068 R hypothetical protein complement(2545601..2546068) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914978 YP_495004.1 CDS SAUSA300_2369 NC_007793.1 2546079 2546771 R catalyzes the formation of pimeloyl-CoA from pimelate and coenzyme A; 6-carboxyhexanoate--CoA ligase complement(2546079..2546771) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913096 YP_495005.1 CDS SAUSA300_2370 NC_007793.1 2546782 2547897 R identified by match to protein family HMM PF00155; match to protein family HMM PF00266; putative 8-amino-7-oxononanoate synthase complement(2546782..2547897) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914760 YP_495006.1 CDS bioB NC_007793.1 2547875 2548882 R catalyzes the formation of biotin from dethiobiotin and sulfur 2 S-adenosyl-L-methionine; biotin synthase complement(2547875..2548882) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914368 YP_495007.1 CDS bioA NC_007793.1 2548884 2550242 R identified by match to protein family HMM PF00202; match to protein family HMM TIGR00508; adenosylmethionine-8-amino-7-oxononanoate aminotransferase complement(2548884..2550242) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915137 YP_495008.1 CDS bioD NC_007793.1 2550220 2550906 R identified by match to protein family HMM TIGR00347; dethiobiotin synthase complement(2550220..2550906) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913803 YP_495009.1 CDS SAUSA300_2374 NC_007793.1 2551358 2553091 R identified by match to protein family HMM PF00005; ABC transporter ATP-binding/permease complement(2551358..2553091) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913306 YP_495010.1 CDS SAUSA300_2375 NC_007793.1 2553116 2554879 R identified by match to protein family HMM PF00005; match to protein family HMM PF00664; ABC transporter ATP-binding/permease complement(2553116..2554879) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915202 YP_495011.1 CDS SAUSA300_2376 NC_007793.1 2555748 2556134 R identified by match to protein family HMM PF04138; hypothetical protein complement(2555748..2556134) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914202 YP_495012.1 CDS SAUSA300_2377 NC_007793.1 2556402 2557544 D identified by match to protein family HMM PF02595; match to protein family HMM TIGR00045; glycerate kinase 2556402..2557544 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913966 YP_495013.1 CDS SAUSA300_2378 NC_007793.1 2557604 2558263 D hypothetical protein 2557604..2558263 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914811 YP_495014.1 CDS SAUSA300_2379 NC_007793.1 2558445 2559656 D identified by match to protein family HMM PF07690; match to protein family HMM TIGR00710; putative transporter protein 2558445..2559656 Staphylococcus aureus subsp. aureus USA300_FPR3757 3915071 YP_495015.1 CDS SAUSA300_2380 NC_007793.1 2559779 2560252 R identified by match to protein family HMM PF06445; hypothetical protein complement(2559779..2560252) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915373 YP_495016.1 CDS SAUSA300_2381 NC_007793.1 2560452 2561021 D hypothetical protein 2560452..2561021 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914105 YP_495017.1 CDS SAUSA300_2382 NC_007793.1 2561084 2561890 R identified by match to protein family HMM PF00149; hypothetical protein complement(2561084..2561890) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913401 YP_495018.1 CDS SAUSA300_2383 NC_007793.1 2562176 2563585 D identified by match to protein family HMM PF00324; amino acid permease 2562176..2563585 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913777 YP_495019.1 CDS SAUSA300_2384 NC_007793.1 2563723 2565801 D identified by match to protein family HMM PF00999; putative Na+/H+ antiporter 2563723..2565801 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914486 YP_495020.1 CDS SAUSA300_2385 NC_007793.1 2565941 2567770 R identified by match to protein family HMM PF00324; hypothetical protein complement(2565941..2567770) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914943 YP_495021.1 CDS SAUSA300_2386 NC_007793.1 2568002 2569498 D identified by match to protein family HMM PF00144; beta-lactamase 2568002..2569498 Staphylococcus aureus subsp. aureus USA300_FPR3757 3915070 YP_495022.1 CDS SAUSA300_2387 NC_007793.1 2569590 2570441 R identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; NAD dependent epimerase/dehydratase family protein complement(2569590..2570441) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914754 YP_495023.1 CDS panE NC_007793.1 2570763 2571698 R ketopantoate reductase; catalyzes the NADPH reduction of ketopantoate to pantoate; functions in pantothenate (vitamin B5) biosynthesis; 2-dehydropantoate 2-reductase complement(2570763..2571698) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914289 YP_495024.1 CDS SAUSA300_2389 NC_007793.1 2571924 2573324 R identified by match to protein family HMM PF07690; putative drug transporter complement(2571924..2573324) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913432 YP_495025.1 CDS opuCd NC_007793.1 2573618 2574313 R identified by match to protein family HMM PF00528; glycine betaine/carnitine/choline transport system permease complement(2573618..2574313) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913563 YP_495026.1 CDS opuCc NC_007793.1 2574313 2575254 R identified by match to protein family HMM PF04069; glycine betaine/carnitine/choline ABC transporter complement(2574313..2575254) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913192 YP_495027.1 CDS opuCb NC_007793.1 2575271 2575906 R identified by match to protein family HMM PF00528; glycine betaine/carnitine/choline ABC transporter complement(2575271..2575906) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913918 YP_495028.1 CDS opuCa NC_007793.1 2575903 2577129 R identified by match to protein family HMM PF00005; match to protein family HMM PF00571; match to protein family HMM TIGR01186; glycine betaine/carnitine/choline ABC transporter ATP-binding protein complement(2575903..2577129) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914386 YP_495029.1 CDS SAUSA300_2394 NC_007793.1 2577799 2578398 R hypothetical protein complement(2577799..2578398) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913461 YP_495030.1 CDS SAUSA300_2395 NC_007793.1 2578578 2580215 D identified by match to protein family HMM PF00324; amino acid permease 2578578..2580215 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913377 YP_495031.1 CDS pnbA NC_007793.1 2580823 2582175 D identified by match to protein family HMM PF00135; para-nitrobenzyl esterase 2580823..2582175 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914130 YP_495032.1 CDS SAUSA300_2397 NC_007793.1 2582237 2583424 R identified by match to protein family HMM PF07690; putative transport protein complement(2582237..2583424) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914084 YP_495033.1 CDS SAUSA300_2398 NC_007793.1 2583820 2584596 R identified by match to protein family HMM PF03649; match to protein family HMM TIGR00245; hypothetical protein complement(2583820..2584596) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913810 YP_495034.1 CDS SAUSA300_2399 NC_007793.1 2584589 2585251 R identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein complement(2584589..2585251) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913666 YP_495035.1 CDS SAUSA300_2400 NC_007793.1 2585499 2586575 R identified by match to protein family HMM PF05343; glutamyl-aminopeptidase complement(2585499..2586575) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913425 YP_495036.1 CDS SAUSA300_2401 NC_007793.1 2586930 2587196 R identified by match to protein family HMM PF05016; match to protein family HMM PF06769; match to protein family HMM TIGR02116; addiction module antitoxin complement(2586930..2587196) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915027 YP_495037.1 CDS SAUSA300_2402 NC_007793.1 2587196 2587453 R identified by match to protein family HMM PF02604; match to protein family HMM TIGR01552; hypothetical protein complement(2587196..2587453) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913086 YP_495038.1 CDS SAUSA300_2403 NC_007793.1 2587812 2588267 D identified by match to protein family HMM PF06998; putative lipoprotein 2587812..2588267 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914915 YP_495039.1 CDS SAUSA300_2404 NC_007793.1 2588435 2590012 R identified by similarity to GB:CAA75550.1; match to protein family HMM PF01645; hypothetical protein complement(2588435..2590012) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914612 YP_495040.1 CDS SAUSA300_2405 NC_007793.1 2590207 2590956 D identified by similarity to GB:AAW38558.1; hypothetical protein 2590207..2590956 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913119 YP_495041.1 CDS SAUSA300_2406 NC_007793.1 2591180 2592373 R identified by match to protein family HMM PF07690; putative transporter complement(2591180..2592373) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913224 YP_495042.1 CDS SAUSA300_2407 NC_007793.1 2592385 2593134 R identified by match to protein family HMM PF00005; oligopeptide ABC transporter ATP-binding protein complement(2592385..2593134) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914262 YP_495043.1 CDS SAUSA300_2408 NC_007793.1 2593127 2593942 R identified by match to protein family HMM PF00005; oligopeptide ABC transporter ATP-binding protein complement(2593127..2593942) Staphylococcus aureus subsp. aureus USA300_FPR3757 3912802 YP_495044.1 CDS SAUSA300_2409 NC_007793.1 2593939 2594808 R identified by match to protein family HMM PF00528; oligopeptide ABC transporter permease complement(2593939..2594808) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914214 YP_495045.1 CDS SAUSA300_2410 NC_007793.1 2594805 2595740 R identified by match to protein family HMM PF00528; oligopeptide ABC transporter permease complement(2594805..2595740) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914740 YP_495046.1 CDS opp-1A NC_007793.1 2595753 2597351 R identified by match to protein family HMM PF00496; match to protein family HMM TIGR02294; oligopeptide permease, peptide-binding protein complement(2595753..2597351) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913406 YP_495047.1 CDS SAUSA300_2412 NC_007793.1 2597494 2598708 R hypothetical protein complement(2597494..2598708) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913076 YP_495048.1 CDS SAUSA300_2413 NC_007793.1 2598788 2599606 R hypothetical protein complement(2598788..2599606) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913442 YP_495049.1 CDS SAUSA300_2414 NC_007793.1 2599617 2600438 R identified by similarity to GB:BAB05790.1; hypothetical protein complement(2599617..2600438) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913344 YP_495050.1 CDS SAUSA300_2415 NC_007793.1 2601305 2601670 R hypothetical protein complement(2601305..2601670) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913873 YP_495051.2 CDS SAUSA300_2416 NC_007793.1 2601933 2602652 R glucose 1-dehydrogenase-like protein complement(2601933..2602652) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914752 YP_495052.1 CDS SAUSA300_2417 NC_007793.1 2602984 2604522 D identified by match to protein family HMM PF03606; match to protein family HMM PF03806; putative transporter 2602984..2604522 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914344 YP_495053.1 CDS SAUSA300_2418 NC_007793.1 2604634 2605056 R identified by match to protein family HMM PF02627; match to protein family HMM TIGR00778; hypothetical protein complement(2604634..2605056) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913507 YP_495054.1 CDS SAUSA300_2419 NC_007793.1 2605508 2605927 R identified by match to protein family HMM PF07252; hypothetical protein complement(2605508..2605927) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914825 YP_495055.1 CDS SAUSA300_2420 NC_007793.1 2605945 2606364 R identified by match to protein family HMM PF07252; hypothetical protein complement(2605945..2606364) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915378 YP_495056.1 CDS SAUSA300_2421 NC_007793.1 2606631 2607053 R identified by match to protein family HMM PF07252; hypothetical protein complement(2606631..2607053) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914116 YP_495057.1 CDS SAUSA300_2422 NC_007793.1 2607304 2607999 R identified by match to protein family HMM PF00106; match to protein family HMM PF01370; short chain dehydrogenase/reductase family oxidoreductase complement(2607304..2607999) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913988 YP_495058.1 CDS SAUSA300_2423 NC_007793.1 2608829 2609020 R hypothetical protein complement(2608829..2609020) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914667 YP_495059.1 CDS SAUSA300_2424 NC_007793.1 2609581 2610375 R identified by match to protein family HMM PF04507; match to protein family HMM TIGR01742; putative tandem lipoprotein complement(2609581..2610375) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915318 YP_495060.1 CDS SAUSA300_2425 NC_007793.1 2610911 2611198 R hypothetical protein complement(2610911..2611198) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913236 YP_495061.1 CDS SAUSA300_2426 NC_007793.1 2611201 2611527 R hypothetical protein complement(2611201..2611527) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913166 YP_495062.1 CDS SAUSA300_2428 NC_007793.1 2612848 2613090 R tandem lipoprotein complement(2612848..2613090) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913521 YP_495063.1 CDS SAUSA300_2429 NC_007793.1 2613186 2613632 R identified by match to protein family HMM PF04507; match to protein family HMM TIGR01742; tandem lipoprotein complement(2613186..2613632) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914802 YP_495064.1 CDS SAUSA300_2430 NC_007793.1 2613744 2614520 R identified by match to protein family HMM PF04507; match to protein family HMM TIGR01742; tandem lipoprotein complement(2613744..2614520) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914316 YP_495065.1 CDS SAUSA300_2431 NC_007793.1 2614823 2617684 R identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF04851; putative helicase complement(2614823..2617684) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915191 YP_495066.1 CDS SAUSA300_2432 NC_007793.1 2617686 2618078 R identified by match to protein family HMM PF00293; MutT/NUDIX family hydrolase complement(2617686..2618078) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913225 YP_495067.1 CDS SAUSA300_2433 NC_007793.1 2618195 2620003 D identified by match to protein family HMM PF00408; match to protein family HMM PF02878; match to protein family HMM PF02879; match to protein family HMM PF02880; phosphoglucomutase/phosphomannomutase family protein 2618195..2620003 Staphylococcus aureus subsp. aureus USA300_FPR3757 3912907 YP_495068.1 CDS SAUSA300_2434 NC_007793.1 2621327 2622520 R identified by match to protein family HMM PF07690; transporter protein complement(2621327..2622520) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913749 YP_495069.1 CDS SAUSA300_2435 NC_007793.1 2622904 2623494 R identified by similarity to GB:BAB58658.2; match to protein family HMM PF00746; match to protein family HMM PF07501; match to protein family HMM TIGR01167; cell wall surface anchor family protein complement(2622904..2623494) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914510 YP_495070.1 CDS SAUSA300_2436 NC_007793.1 2624916 2626250 R identified by match to protein family HMM PF04650; match to protein family HMM TIGR01168; putative cell wall surface anchor family protein complement(2624916..2626250) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914248 YP_495071.1 CDS sarT NC_007793.1 2626556 2626912 R identified by match to protein family HMM TIGR01889; accessory regulator T complement(2626556..2626912) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914287 YP_495072.1 CDS sarU NC_007793.1 2627241 2627984 D identified by match to protein family HMM PF01047; match to protein family HMM TIGR01889; accessory regulator U 2627241..2627984 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913317 YP_495073.1 CDS galU NC_007793.1 2628195 2628977 R identified by match to protein family HMM PF00483; match to protein family HMM TIGR01099; UTP-glucose-1-phosphate uridylyltransferase complement(2628195..2628977) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914648 YP_495074.1 CDS fnbB NC_007793.1 2629241 2632063 R identified by match to protein family HMM PF00746; match to protein family HMM PF02986; match to protein family HMM PF04650; match to protein family HMM TIGR01167; match to protein family HMM TIGR01168; fibronectin binding protein B complement(2629241..2632063) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913823 YP_495075.1 CDS fnbA NC_007793.1 2632745 2635801 R identified by match to protein family HMM PF00746; match to protein family HMM PF02986; match to protein family HMM PF04650; match to protein family HMM TIGR01167; match to protein family HMM TIGR01168; fibronectin binding protein A complement(2632745..2635801) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913735 YP_495076.1 CDS gntP NC_007793.1 2636270 2637628 R identified by match to protein family HMM PF02447; match to protein family HMM PF03600; match to protein family HMM TIGR00791; gluconate permease complement(2636270..2637628) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913509 YP_495077.1 CDS gntK NC_007793.1 2637745 2639298 R identified by match to protein family HMM PF00370; match to protein family HMM PF02782; match to protein family HMM TIGR01314; gluconate kinase complement(2637745..2639298) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913876 YP_495078.1 CDS gntR NC_007793.1 2639322 2640002 R identified by match to protein family HMM PF00392; match to protein family HMM PF07729; gluconate operon transcriptional repressor complement(2639322..2640002) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913652 YP_495079.1 CDS SAUSA300_2445 NC_007793.1 2640156 2640920 R identified by match to protein family HMM PF00376; MerR family transcriptional regulator complement(2640156..2640920) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914031 YP_495080.1 CDS SAUSA300_2446 NC_007793.1 2641085 2641777 R identified by match to protein family HMM PF04607; hypothetical protein complement(2641085..2641777) Staphylococcus aureus subsp. aureus USA300_FPR3757 3912955 YP_495081.1 CDS SAUSA300_2447 NC_007793.1 2642008 2642496 R hypothetical protein complement(2642008..2642496) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914415 YP_495082.1 CDS SAUSA300_2448 NC_007793.1 2642563 2644455 R identified by match to protein family HMM PF05976; hypothetical protein complement(2642563..2644455) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914201 YP_495083.1 CDS SAUSA300_2449 NC_007793.1 2644864 2646141 R identified by match to protein family HMM PF07690; putative transporter complement(2644864..2646141) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913064 YP_495084.1 CDS SAUSA300_2450 NC_007793.1 2646688 2647299 D DedA family protein 2646688..2647299 Staphylococcus aureus subsp. aureus USA300_FPR3757 3915034 YP_495085.1 CDS SAUSA300_2451 NC_007793.1 2647396 2648559 R identified by match to protein family HMM PF00083; match to protein family HMM PF07690; drug transporter complement(2647396..2648559) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914164 YP_495086.1 CDS SAUSA300_2452 NC_007793.1 2648552 2649016 R identified by match to protein family HMM PF01047; MarR family transcriptional regulator complement(2648552..2649016) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915073 YP_495087.1 CDS SAUSA300_2453 NC_007793.1 2649444 2650139 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 2649444..2650139 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914485 YP_495088.1 CDS SAUSA300_2454 NC_007793.1 2650141 2650911 D membrane spanning protein 2650141..2650911 Staphylococcus aureus subsp. aureus USA300_FPR3757 3912762 YP_495089.1 CDS SAUSA300_2455 NC_007793.1 2651284 2653248 D identified by match to protein family HMM PF06874; putative fructose-1,6-bisphosphatase 2651284..2653248 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913549 YP_495090.1 CDS SAUSA300_2456 NC_007793.1 2653766 2654671 D hypothetical protein 2653766..2654671 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914975 YP_495091.1 CDS SAUSA300_2457 NC_007793.1 2654776 2655369 R identified by match to protein family HMM PF02230; phospholipase/carboxylesterase family protein complement(2654776..2655369) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914851 YP_495092.1 CDS SAUSA300_2458 NC_007793.1 2655391 2656263 R identified by match to protein family HMM PF00903; glyoxylase family protein complement(2655391..2656263) Staphylococcus aureus subsp. aureus USA300_FPR3757 3912870 YP_495093.1 CDS SAUSA300_2459 NC_007793.1 2656437 2656871 R identified by match to protein family HMM PF01047; match to protein family HMM PF01978; MarR family transcriptional regulator complement(2656437..2656871) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914257 YP_495094.1 CDS SAUSA300_2460 NC_007793.1 2657098 2657382 D acetyltransferase family protein 2657098..2657382 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914732 YP_495095.1 CDS SAUSA300_2461 NC_007793.1 2657553 2658359 D identified by match to protein family HMM PF00903; glyoxalase family protein 2657553..2658359 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914708 YP_495096.1 CDS frp NC_007793.1 2658479 2659150 R identified by match to protein family HMM PF00881; NAD(P)H-flavin oxidoreductase complement(2658479..2659150) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913681 YP_495097.1 CDS ddh NC_007793.1 2659357 2660412 D catalyzes the formation of pyruvate from lactate; D-lactate dehydrogenase 2659357..2660412 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914054 YP_495098.1 CDS SAUSA300_2464 NC_007793.1 2660661 2661461 R identified by match to protein family HMM PF05116; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484; HAD superfamily hydrolase complement(2660661..2661461) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914244 YP_495099.1 CDS SAUSA300_2465 NC_007793.1 2661782 2662417 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 2661782..2662417 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913276 YP_495100.1 CDS SAUSA300_2466 NC_007793.1 2662423 2663154 D hypothetical protein 2662423..2663154 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914906 YP_495101.1 CDS srtA NC_007793.1 2663314 2663934 R identified by match to protein family HMM PF04203; match to protein family HMM TIGR01076; sortase complement(2663314..2663934) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913526 YP_495102.1 CDS SAUSA300_2468 NC_007793.1 2664128 2664619 D identified by match to protein family HMM PF00583; acetyltransferase 2664128..2664619 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913622 YP_495103.1 CDS sdaAA NC_007793.1 2665406 2666305 R identified by match to protein family HMM PF03313; match to protein family HMM TIGR00718; L-serine dehydratase, iron-sulfur-dependent, alpha subunit complement(2665406..2666305) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913451 YP_495104.1 CDS sdaAB NC_007793.1 2666319 2666999 R identified by match to protein family HMM PF03315; match to protein family HMM TIGR00719; L-serine dehydratase, iron-sulfur-dependent, beta subunit complement(2666319..2666999) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915404 YP_495105.1 CDS SAUSA300_2471 NC_007793.1 2667002 2668045 R perfringolysin O regulator protein complement(2667002..2668045) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914683 YP_495106.1 CDS SAUSA300_2472 NC_007793.1 2668955 2669917 D identified by match to protein family HMM PF00892; hypothetical protein 2668955..2669917 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913117 YP_495107.1 CDS SAUSA300_2473 NC_007793.1 2669999 2670967 R identified by match to protein family HMM PF07859; hypothetical protein complement(2669999..2670967) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914658 YP_495108.1 CDS SAUSA300_2474 NC_007793.1 2671100 2671444 R identified by similarity to GB:BAE03833.1; hypothetical protein complement(2671100..2671444) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913611 YP_495109.1 CDS SAUSA300_2475 NC_007793.1 2671486 2671896 R hypothetical protein complement(2671486..2671896) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913620 YP_495110.1 CDS ptsG NC_007793.1 2672276 2674342 R identified by match to protein family HMM PF00358; match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR00830; match to protein family HMM TIGR02002; phosphotransferase system, glucose-specific IIABC component complement(2672276..2674342) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914143 YP_495111.1 CDS cidC NC_007793.1 2674643 2676382 R catalyzes the formation of acetyl phosphate from pyruvate; pyruvate oxidase complement(2674643..2676382) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915109 YP_495112.1 CDS cidB NC_007793.1 2676429 2677118 R identified by match to protein family HMM PF04172; hypothetical protein complement(2676429..2677118) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914284 YP_495113.1 CDS cidA NC_007793.1 2677111 2677506 R identified by match to protein family HMM PF03788; holin-like protein cidA complement(2677111..2677506) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914053 YP_495114.1 CDS SAUSA300_2480 NC_007793.1 2677719 2678606 R identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator complement(2677719..2678606) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914891 YP_495115.1 CDS SAUSA300_2481 NC_007793.1 2678764 2678982 D identified by match to protein family HMM PF06855; hypothetical protein 2678764..2678982 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913907 YP_495116.1 CDS SAUSA300_2482 NC_007793.1 2679371 2679802 D identified by match to protein family HMM PF05257; hypothetical protein 2679371..2679802 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914157 YP_495117.1 CDS SAUSA300_2483 NC_007793.1 2681398 2682675 R identified by match to protein family HMM TIGR00532; hydroxymethylglutaryl-CoA reductase complement(2681398..2682675) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915280 YP_495118.1 CDS SAUSA300_2484 NC_007793.1 2682929 2684095 D identified by match to protein family HMM PF01154; match to protein family HMM TIGR01835; hydroxymethylglutaryl-CoA synthase 2682929..2684095 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914610 YP_495119.1 CDS SAUSA300_2485 NC_007793.1 2684265 2684786 R identified by match to protein family HMM PF01035; match to protein family HMM PF02870; match to protein family HMM TIGR00589; methylated DNA-protein cysteine methyltransferase complement(2684265..2684786) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914515 YP_495120.1 CDS SAUSA300_2486 NC_007793.1 2685195 2687300 D identified by match to protein family HMM PF00004; match to protein family HMM PF02151; match to protein family HMM PF07724; putative ATP-dependent Clp proteinase 2685195..2687300 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913802 YP_495121.1 CDS feoB NC_007793.1 2687552 2689546 R identified by match to protein family HMM PF01926; match to protein family HMM PF02421; match to protein family HMM PF07664; match to protein family HMM PF07670; match to protein family HMM TIGR00231; match to protein family HMM TIGR00437; ferrous iron transport protein B complement(2687552..2689546) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915251 YP_495122.1 CDS feoA NC_007793.1 2689558 2689785 R identified by match to protein family HMM PF04023; ferrous iron transport protein A complement(2689558..2689785) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914018 YP_495123.1 CDS SAUSA300_2489 NC_007793.1 2690001 2692469 R identified by match to protein family HMM PF03176; antibiotic transport-associated protein-like protein complement(2690001..2692469) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913822 YP_495124.1 CDS SAUSA300_2490 NC_007793.1 2692635 2693183 D identified by match to protein family HMM PF00440; TetR family regulatory protein 2692635..2693183 Staphylococcus aureus subsp. aureus USA300_FPR3757 3915386 YP_495125.1 CDS SAUSA300_2491 NC_007793.1 2693539 2695083 R catalyzes the conversion of 1-proline-5-carboxylate dehydrogenase to L-glutamate; 1-pyrroline-5-carboxylate dehydrogenase complement(2693539..2695083) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914029 YP_495126.1 CDS SAUSA300_2492 NC_007793.1 2695273 2695872 R identified by match to protein family HMM PF00132; acetyltransferase family protein complement(2695273..2695872) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914590 YP_495127.1 CDS SAUSA300_2493 NC_007793.1 2696111 2696302 D hypothetical protein 2696111..2696302 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914107 YP_495128.1 CDS SAUSA300_2494 NC_007793.1 2696542 2698950 D identified by match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525; copper-translocating P-type ATPase 2696542..2698950 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913558 YP_495129.1 CDS SAUSA300_2495 NC_007793.1 2699241 2699447 D identified by match to protein family HMM PF00403; match to protein family HMM TIGR00003; copper chaperone copZ 2699241..2699447 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914779 YP_495130.1 CDS SAUSA300_2496 NC_007793.1 2699537 2700535 R catalyzes the formation of pyruvate from lactate; D-lactate dehydrogenase complement(2699537..2700535) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913154 YP_495131.1 CDS SAUSA300_2497 NC_007793.1 2700558 2701712 R identified by match to protein family HMM PF00155; aminotransferase, class I complement(2700558..2701712) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913372 YP_495132.1 CDS crtN NC_007793.1 2702139 2703647 R identified by match to protein family HMM PF01266; match to protein family HMM PF01593; match to protein family HMM TIGR02734; squalene synthase complement(2702139..2703647) Staphylococcus aureus subsp. aureus USA300_FPR3757 3912838 YP_495133.1 CDS crtM NC_007793.1 2703659 2704522 R identified by match to protein family HMM PF00494; squalene desaturase complement(2703659..2704522) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914346 YP_495134.1 CDS SAUSA300_2500 NC_007793.1 2704559 2705686 R identified by match to protein family HMM PF00535; glycosyl transferase complement(2704559..2705686) Staphylococcus aureus subsp. aureus USA300_FPR3757 3912791 YP_495135.1 CDS SAUSA300_2501 NC_007793.1 2705692 2707185 R identified by match to protein family HMM PF01266; match to protein family HMM PF01593; match to protein family HMM TIGR02734; phytoene dehydrogenase complement(2705692..2707185) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913071 YP_495136.1 CDS SAUSA300_2502 NC_007793.1 2707178 2707666 R hypothetical protein complement(2707178..2707666) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914863 YP_495137.1 CDS SAUSA300_2503 NC_007793.1 2707841 2708608 R identified by match to protein family HMM PF05257; secretory antigen precursor SsaA complement(2707841..2708608) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913194 YP_495138.1 CDS SAUSA300_2504 NC_007793.1 2708969 2710780 R identified by match to protein family HMM PF01757; acyltransferase complement(2708969..2710780) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913047 YP_495139.1 CDS SAUSA300_2505 NC_007793.1 2711291 2711779 R identified by match to protein family HMM PF00583; acetyltransferase complement(2711291..2711779) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914928 YP_495140.1 CDS isaA NC_007793.1 2712055 2712756 R identified by match to protein family HMM PF06737; immunodominant antigen A complement(2712055..2712756) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914600 YP_495141.1 CDS SAUSA300_2507 NC_007793.1 2713364 2714419 R hypothetical protein complement(2713364..2714419) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914793 YP_495142.1 CDS SAUSA300_2508 NC_007793.1 2714565 2714768 D hypothetical protein 2714565..2714768 Staphylococcus aureus subsp. aureus USA300_FPR3757 3915276 YP_495143.1 CDS SAUSA300_2509 NC_007793.1 2714829 2715398 D identified by match to protein family HMM PF00440; TetR family transcriptional regulator 2714829..2715398 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913974 YP_495144.1 CDS SAUSA300_2510 NC_007793.1 2715596 2716096 D hypothetical protein 2715596..2716096 Staphylococcus aureus subsp. aureus USA300_FPR3757 3915393 YP_495145.1 CDS SAUSA300_2511 NC_007793.1 2716316 2716546 D identified by match to protein family HMM PF05979; hypothetical protein 2716316..2716546 Staphylococcus aureus subsp. aureus USA300_FPR3757 3915269 YP_495146.1 CDS SAUSA300_2512 NC_007793.1 2716696 2717073 R identified by match to protein family HMM PF00903; glyoxalase family protein complement(2716696..2717073) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913145 YP_495147.1 CDS SAUSA300_2513 NC_007793.1 2717090 2717911 R identified by match to protein family HMM PF05368; hypothetical protein complement(2717090..2717911) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915366 YP_495148.1 CDS SAUSA300_2514 NC_007793.1 2717931 2718230 R hypothetical protein complement(2717931..2718230) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913466 YP_495149.1 CDS SAUSA300_2515 NC_007793.1 2718361 2718918 D identified by match to protein family HMM PF00440; TetR family transcriptional regulator 2718361..2718918 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914693 YP_495150.1 CDS SAUSA300_2516 NC_007793.1 2718911 2719615 D identified by match to protein family HMM PF00106; short chain dehydrogenase/reductase family oxidoreductase 2718911..2719615 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914605 YP_495151.1 CDS SAUSA300_2517 NC_007793.1 2719713 2720723 D identified by match to protein family HMM PF04909; amidohydrolase family protein 2719713..2720723 Staphylococcus aureus subsp. aureus USA300_FPR3757 3915304 YP_495152.1 CDS SAUSA300_2518 NC_007793.1 2720743 2721573 D identified by match to protein family HMM PF00561; hydrolase family protein 2720743..2721573 Staphylococcus aureus subsp. aureus USA300_FPR3757 3915299 YP_495153.1 CDS SAUSA300_2519 NC_007793.1 2721720 2722610 R identified by match to protein family HMM PF02492; match to protein family HMM PF07683; putative cobalamin synthesis protein complement(2721720..2722610) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914179 YP_495154.1 CDS SAUSA300_2520 NC_007793.1 2722708 2724027 R identified by match to protein family HMM PF07670; transporter gate domain-containing protein complement(2722708..2724027) Staphylococcus aureus subsp. aureus USA300_FPR3757 3912986 YP_495155.1 CDS SAUSA300_2521 NC_007793.1 2724042 2725148 R identified by match to protein family HMM PF07992; hypothetical protein complement(2724042..2725148) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914632 YP_495156.1 CDS SAUSA300_2522 NC_007793.1 2725482 2725778 R hypothetical protein complement(2725482..2725778) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913025 YP_495157.1 CDS SAUSA300_2523 NC_007793.1 2725766 2726134 R hypothetical protein complement(2725766..2726134) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915006 YP_495158.1 CDS SAUSA300_2524 NC_007793.1 2726149 2726427 R hypothetical protein complement(2726149..2726427) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914478 YP_495159.1 CDS SAUSA300_2525 NC_007793.1 2726769 2727635 R identified by match to protein family HMM PF01636; match to protein family HMM PF03881; hypothetical protein complement(2726769..2727635) Staphylococcus aureus subsp. aureus USA300_FPR3757 3912770 YP_495160.1 CDS pyrD NC_007793.1 2727853 2728917 D catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors; dihydroorotate dehydrogenase 2 2727853..2728917 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913552 YP_495161.1 CDS SAUSA300_2527 NC_007793.1 2729072 2729347 D hypothetical protein 2729072..2729347 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914965 YP_495162.1 CDS SAUSA300_2528 NC_007793.1 2729533 2730255 R identified by match to protein family HMM PF02677; hypothetical protein complement(2729533..2730255) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914848 YP_495163.1 CDS SAUSA300_2529 NC_007793.1 2730609 2731058 D identified by match to protein family HMM PF00903; match to protein family HMM PF06983; hypothetical protein 2730609..2731058 Staphylococcus aureus subsp. aureus USA300_FPR3757 3912865 YP_495164.1 CDS SAUSA300_2530 NC_007793.1 2731139 2731726 R TetR family transcriptional regulator complement(2731139..2731726) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914260 YP_495165.1 CDS SAUSA300_2531 NC_007793.1 2731859 2733541 D identified by match to protein family HMM PF02129; match to protein family HMM TIGR00976; CocE/NonD family hydrolase 2731859..2733541 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914782 YP_495166.1 CDS panD NC_007793.1 2733670 2734041 R Converts L-aspartate to beta-alanine and provides the major route of beta-alanine production in bacteria. Beta-alanine is essential for the biosynthesis of pantothenate (vitamin B5); aspartate alpha-decarboxylase complement(2733670..2734041) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913885 YP_495167.1 CDS panC NC_007793.1 2734055 2734906 R catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine; pantoate--beta-alanine ligase complement(2734055..2734906) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913232 YP_495168.1 CDS panB NC_007793.1 2734899 2735690 R catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate; 3-methyl-2-oxobutanoate hydroxymethyltransferase complement(2734899..2735690) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915028 YP_495169.1 CDS panE NC_007793.1 2735790 2736650 D identified by match to protein family HMM PF01210; match to protein family HMM PF02558; match to protein family HMM TIGR00745; 2-dehydropantoate 2-reductase 2735790..2736650 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913849 YP_495170.1 CDS budA NC_007793.1 2736736 2737440 R identified by match to protein family HMM PF03306; match to protein family HMM TIGR01252; alpha-acetolactate decarboxylase complement(2736736..2737440) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913323 YP_495171.1 CDS SAUSA300_2537 NC_007793.1 2737718 2738677 R identified by match to protein family HMM PF00056; match to protein family HMM PF02866; match to protein family HMM TIGR01771; L-lactate dehydrogenase complement(2737718..2738677) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913167 YP_495172.1 CDS SAUSA300_2538 NC_007793.1 2739364 2740812 D identified by match to protein family HMM PF00324; amino acid permease family protein 2739364..2740812 Staphylococcus aureus subsp. aureus USA300_FPR3757 3915170 YP_495173.1 CDS SAUSA300_2539 NC_007793.1 2740893 2742266 R catalyzes the formation of succinate semialdehyde and glutamate from 4-aminobutanoate and 2-oxoglutarate; 4-aminobutyrate aminotransferase complement(2740893..2742266) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913186 YP_495174.1 CDS SAUSA300_2540 NC_007793.1 2743027 2743917 D catalyzes the formation of glycerone phosphate and D-glyceraldehyde 3-phosphate from D-fructose 1,6-bisphosphate in glycolysis; fructose-1,6-bisphosphate aldolase 2743027..2743917 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913542 YP_495175.1 CDS mqo NC_007793.1 2744110 2745606 R malate dehydrogenase; catalyzes the oxidation of malate to oxaloacetate; malate:quinone oxidoreductase complement(2744110..2745606) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914383 YP_495176.1 CDS SAUSA300_2542 NC_007793.1 2746291 2747889 R identified by match to protein family HMM PF00501; putative AMP-binding enzyme complement(2746291..2747889) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913941 YP_495177.1 CDS SAUSA300_2543 NC_007793.1 2748083 2748526 R identified by match to protein family HMM PF03992; hypothetical protein complement(2748083..2748526) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913063 YP_495178.1 CDS SAUSA300_2544 NC_007793.1 2748807 2749019 R identified by match to protein family HMM PF06855; hypothetical protein complement(2748807..2749019) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913065 YP_495179.1 CDS betA NC_007793.1 2749297 2751006 R catalyzes the oxidation of choline to betaine aldehyde and betain aldehyde to glycine betaine; choline dehydrogenase complement(2749297..2751006) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914899 YP_495180.1 CDS betB NC_007793.1 2751267 2752757 R identified by match to protein family HMM PF00171; match to protein family HMM TIGR01804; glycine betaine aldehyde dehydrogenase complement(2751267..2752757) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913279 YP_495181.1 CDS SAUSA300_2547 NC_007793.1 2753010 2753573 D hypothetical protein 2753010..2753573 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913367 YP_495182.1 CDS SAUSA300_2548 NC_007793.1 2753761 2754447 R hypothetical protein complement(2753761..2754447) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914751 YP_495183.1 CDS bccT NC_007793.1 2754711 2756333 R identified by match to protein family HMM PF02028; match to protein family HMM TIGR00842; BCCT family choline/carnitine/betaine transporter complement(2754711..2756333) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915059 YP_495184.1 CDS nrdG NC_007793.1 2756852 2757388 R identified by match to protein family HMM TIGR02491; anaerobic ribonucleotide reductase, small subunit complement(2756852..2757388) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913263 YP_495185.1 CDS nrdD NC_007793.1 2757385 2759235 R Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates; anaerobic ribonucleoside triphosphate reductase complement(2757385..2759235) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913390 YP_495186.1 CDS SAUSA300_2552 NC_007793.1 2759482 2760852 R identified by match to protein family HMM PF03600; match to protein family HMM PF06808; match to protein family HMM TIGR00784; citrate transporter, permease complement(2759482..2760852) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914926 YP_495187.1 CDS SAUSA300_2553 NC_007793.1 2761345 2761950 R catalyzes the formation of siroheme from precorrin-2; precorrin-2 dehydrogenase complement(2761345..2761950) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915007 YP_495188.1 CDS SAUSA300_2554 NC_007793.1 2762013 2763893 R identified by match to protein family HMM PF00175; match to protein family HMM PF00258; match to protein family HMM PF00667; match to protein family HMM TIGR01931; sulfite reductase flavoprotein complement(2762013..2763893) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915090 YP_495189.1 CDS SAUSA300_2555 NC_007793.1 2764288 2764785 R identified by match to protein family HMM PF00255; glutathione peroxidase complement(2764288..2764785) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914215 YP_495190.1 CDS SAUSA300_2556 NC_007793.1 2766209 2768209 R identified by match to protein family HMM PF02687; ABC transporter protein complement(2766209..2768209) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913155 YP_495191.1 CDS SAUSA300_2557 NC_007793.1 2768206 2768961 R identified by match to protein family HMM PF00005; ABC transporter protein complement(2768206..2768961) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914559 YP_495192.1 CDS nsaS NC_007793.1 2769069 2769956 R identified by match to protein family HMM PF02518; nisin susceptibility-associated sensor histidine kinase complement(2769069..2769956) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914230 YP_495193.1 CDS SAUSA300_2559 NC_007793.1 2769967 2770632 R identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator complement(2769967..2770632) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913416 YP_495194.1 CDS SAUSA300_2560 NC_007793.1 2770658 2770858 R hypothetical protein complement(2770658..2770858) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914491 YP_495195.1 CDS phoB NC_007793.1 2771056 2772480 D identified by match to protein family HMM PF00245; alkaline phosphatase 2771056..2772480 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914423 YP_495196.1 CDS SAUSA300_2562 NC_007793.1 2772540 2772641 R hypothetical protein complement(2772540..2772641) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915050 YP_495197.1 CDS SAUSA300_2563 NC_007793.1 2772763 2773218 R putative transcriptional regulator complement(2772763..2773218) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914881 YP_495198.1 CDS estA NC_007793.1 2773463 2774224 R identified by match to protein family HMM PF00756; tributyrin esterase complement(2773463..2774224) Staphylococcus aureus subsp. aureus USA300_FPR3757 3912919 YP_495199.1 CDS clfB NC_007793.1 2774340 2777039 R identified by match to protein family HMM PF00746; match to protein family HMM PF04650; match to protein family HMM TIGR01167; match to protein family HMM TIGR01168; clumping factor B complement(2774340..2777039) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913559 YP_495200.1 CDS arcR NC_007793.1 2777389 2778093 R identified by match to protein family HMM PF00027; Crp/FNR family transcriptional regulator complement(2777389..2778093) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914440 YP_495201.1 CDS arcC NC_007793.1 2778192 2779133 R catalyzes the reversible synthesis of carbamate and ATP from carbamoyl phosphate and ADP; carbamate kinase complement(2778192..2779133) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914703 YP_495202.1 CDS arcD NC_007793.1 2779150 2780580 R identified by match to protein family HMM PF00324; match to protein family HMM TIGR00905; arginine/ornithine antiporter complement(2779150..2780580) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913769 YP_495203.1 CDS arcB NC_007793.1 2780671 2781681 R catalyzes the formation of ornithine and carbamylphosphate from citrulline in the arginine catabolic pathway; ornithine carbamoyltransferase complement(2780671..2781681) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914085 YP_495204.1 CDS arcA NC_007793.1 2781714 2782949 R catalyzes the degradation of arginine to citruline and ammonia; arginine deiminase complement(2781714..2782949) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913680 YP_495205.1 CDS argR NC_007793.1 2783296 2783745 R identified by match to protein family HMM PF02863; arginine repressor complement(2783296..2783745) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914932 YP_495206.1 CDS aur NC_007793.1 2784112 2785641 R identified by match to protein family HMM PF01447; match to protein family HMM PF02868; match to protein family HMM PF03413; match to protein family HMM PF07504; zinc metalloproteinase aureolysin complement(2784112..2785641) Staphylococcus aureus subsp. aureus USA300_FPR3757 3912931 YP_495207.1 CDS isaB NC_007793.1 2786065 2786592 R immunodominant antigen B complement(2786065..2786592) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913520 YP_495208.1 CDS SAUSA300_2574 NC_007793.1 2786850 2787308 D hypothetical protein 2786850..2787308 Staphylococcus aureus subsp. aureus USA300_FPR3757 3915155 YP_495209.1 CDS SAUSA300_2575 NC_007793.1 2787548 2789422 D identified by match to protein family HMM PF00359; match to protein family HMM PF00874; BglG family transcriptional antiterminator 2787548..2789422 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914643 YP_495210.1 CDS SAUSA300_2576 NC_007793.1 2789499 2791451 D identified by match to protein family HMM PF00359; match to protein family HMM PF02378; match to protein family HMM PF02379; match to protein family HMM TIGR00829; match to protein family HMM TIGR00848; match to protein family HMM TIGR01427; phosphotransferase system, fructose-specific IIABC component 2789499..2791451 Staphylococcus aureus subsp. aureus USA300_FPR3757 3915381 YP_495211.1 CDS manA NC_007793.1 2791465 2792403 D identified by match to protein family HMM PF01238; match to protein family HMM TIGR00218; mannose-6-phosphate isomerase 2791465..2792403 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913500 YP_495212.1 CDS SAUSA300_2578 NC_007793.1 2792515 2795496 R identified by match to protein family HMM PF01061; putative phage infection protein complement(2792515..2795496) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914021 YP_495213.1 CDS SAUSA300_2579 NC_007793.1 2795707 2797566 D identified by match to protein family HMM PF01832; match to protein family HMM PF05257; N-acetylmuramoyl-L-alanine amidase 2795707..2797566 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914398 YP_495214.1 CDS SAUSA300_2580 NC_007793.1 2797833 2798393 R identified by match to protein family HMM PF00857; isochorismatase family protein complement(2797833..2798393) Staphylococcus aureus subsp. aureus USA300_FPR3757 3912930 YP_495215.1 CDS SAUSA300_2581 NC_007793.1 2798561 2800468 R putative surface anchored protein complement(2798561..2800468) Staphylococcus aureus subsp. aureus USA300_FPR3757 3912826 YP_495216.1 CDS SAUSA300_2582 NC_007793.1 2800710 2802068 R hypothetical protein complement(2800710..2802068) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914156 YP_495217.1 CDS SAUSA300_2583 NC_007793.1 2802061 2803569 R identified by match to protein family HMM PF00534; putative glycosyl transferase complement(2802061..2803569) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913170 YP_495218.1 CDS SAUSA300_2584 NC_007793.1 2803587 2805977 R functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; in some organisms, especially gram positive pathogens, have paralogs that have been found to be nonessential but do function in secretion of a subset of exported proteins; preprotein translocase subunit SecA complement(2803587..2805977) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913142 YP_495219.1 CDS SAUSA300_2585 NC_007793.1 2805967 2806926 R hypothetical protein complement(2805967..2806926) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913944 YP_495220.1 CDS SAUSA300_2586 NC_007793.1 2806904 2808472 R hypothetical protein complement(2806904..2808472) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914470 YP_495221.1 CDS SAUSA300_2587 NC_007793.1 2808462 2810015 R accessory secretory protein Asp1 complement(2808462..2810015) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914696 YP_495222.1 CDS secY NC_007793.1 2810026 2811237 R forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY complement(2810026..2811237) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914558 YP_495223.1 CDS SAUSA300_2589 NC_007793.1 2811367 2818182 R identified by match to protein family HMM PF00746; match to protein family HMM PF05345; match to protein family HMM TIGR01167; cell wall anchor domain-containing protein complement(2811367..2818182) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914100 YP_495224.1 CDS SAUSA300_2590 NC_007793.1 2818727 2819419 R hypothetical protein complement(2818727..2819419) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913203 YP_495225.1 CDS SAUSA300_2591 NC_007793.1 2819685 2820113 D hypothetical protein 2819685..2820113 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913175 YP_495226.1 CDS SAUSA300_2592 NC_007793.1 2820556 2820915 D hypothetical protein 2820556..2820915 Staphylococcus aureus subsp. aureus USA300_FPR3757 3915317 YP_495227.1 CDS SAUSA300_2593 NC_007793.1 2821000 2821611 R hypothetical protein complement(2821000..2821611) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915139 YP_495228.1 CDS msrA NC_007793.1 2821690 2822166 R this stereospecific enzymes reduces the S isomer of methionine sulfoxide while MsrB reduces the R form; a fusion protein of this enzyme with MsrB provides protection against oxidative stress in Neisseria gonorrhoeae; methionine sulfoxide reductase A complement(2821690..2822166) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914120 YP_495229.1 CDS SAUSA300_2595 NC_007793.1 2822169 2822669 R identified by match to protein family HMM PF00583; acetyltransferase complement(2822169..2822669) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914888 YP_495230.1 CDS cap1C NC_007793.1 2822904 2823671 R identified by match to protein family HMM PF02811; capsular polysaccharide biosynthesis protein Cap1C complement(2822904..2823671) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914190 YP_495231.1 CDS cap1B NC_007793.1 2823668 2824360 R identified by match to protein family HMM TIGR01007; capsular polysaccharide biosynthesis protein Cap1B complement(2823668..2824360) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914513 YP_495232.1 CDS cap1A NC_007793.1 2824377 2825039 R identified by match to protein family HMM PF02706; capsular polysaccharide biosynthesis protein Cap1A complement(2824377..2825039) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915133 YP_495233.1 CDS tetR NC_007793.1 2825887 2826447 R identified by match to protein family HMM PF00440; intercellular adhesion operon transcription regulator complement(2825887..2826447) Staphylococcus aureus subsp. aureus USA300_FPR3757 3912910 YP_495234.1 CDS icaA NC_007793.1 2826611 2827849 D predicted polysaccharide polymerase involved in biofilm formation; required for the synthesis of the beta-1,6-N-acetylglucosamine polysaccharide; PgaC; in Yersinia the HmsR protein is an inner membrane protein; N-glycosyltransferase 2826611..2827849 Staphylococcus aureus subsp. aureus USA300_FPR3757 3915283 YP_495235.1 CDS icaB NC_007793.1 2828115 2828987 D identified by match to protein family HMM PF01522; intercellular adhesion protein B 2828115..2828987 Staphylococcus aureus subsp. aureus USA300_FPR3757 3912783 YP_495236.1 CDS icaC NC_007793.1 2828974 2830026 D intercellular adhesion protein C 2828974..2830026 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914357 YP_495237.1 CDS lip NC_007793.1 2830473 2832515 R identified by match to protein family HMM PF04650; match to protein family HMM TIGR01168; triacylglycerol lipase complement(2830473..2832515) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913250 YP_495238.1 CDS SAUSA300_2604 NC_007793.1 2833236 2833448 R hypothetical protein complement(2833236..2833448) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914317 YP_495239.1 CDS hisIE NC_007793.1 2833608 2834240 R catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribosyl)-ATP and the subsequent formation of 1-(5-phosphoribosyl)-5-((5- phosphoribosylamino)methylideneamino)imidazole-4- carboxamide from 1-(5-phosphoribosyl)-AMP in histidine biosynthesis; bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase protein complement(2833608..2834240) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914511 YP_495240.1 CDS hisF NC_007793.1 2834237 2834995 R catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase; imidazole glycerol phosphate synthase subunit HisF complement(2834237..2834995) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914758 YP_495241.1 CDS hisA NC_007793.1 2834992 2835696 R catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-hosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide; 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase complement(2834992..2835696) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915089 YP_495242.1 CDS hisH NC_007793.1 2835689 2836267 R with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide; imidazole glycerol phosphate synthase subunit HisH complement(2835689..2836267) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914212 YP_495243.1 CDS hisB NC_007793.1 2836264 2836842 R catalyzes the dehydration of D-erythro-1-(imidazol-4-yl)glycerol 3-phosphate to 3-(imidazol-4-yl)-2-oxopropyl phosphate in histidine biosynthesis; imidazoleglycerol-phosphate dehydratase complement(2836264..2836842) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914011 YP_495244.1 CDS hisC NC_007793.1 2836811 2837824 R identified by match to protein family HMM PF00155; histidinol-phosphate aminotransferase hisC complement(2836811..2837824) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913857 YP_495245.1 CDS hisD NC_007793.1 2837840 2839090 R catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer; histidinol dehydrogenase complement(2837840..2839090) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914765 YP_495246.1 CDS hisG NC_007793.1 2839083 2839697 R short form of enzyme; requires HisZ for function; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms heteromultimer of HisG and HisZ; ATP phosphoribosyltransferase catalytic subunit complement(2839083..2839697) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914636 YP_495247.1 CDS hisZ NC_007793.1 2839715 2840533 R May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine; ATP phosphoribosyltransferase regulatory subunit complement(2839715..2840533) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915330 YP_495248.1 CDS SAUSA300_2614 NC_007793.1 2840838 2841962 R identified by match to protein family HMM PF01522; hypothetical protein complement(2840838..2841962) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913135 YP_495249.1 CDS SAUSA300_2615 NC_007793.1 2842080 2842577 R hypothetical protein complement(2842080..2842577) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915278 YP_495250.1 CDS SAUSA300_2616 NC_007793.1 2842624 2843457 R identified by match to protein family HMM PF02361; cobalt transport family protein complement(2842624..2843457) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915026 YP_495251.1 CDS SAUSA300_2617 NC_007793.1 2843454 2845166 R identified by match to protein family HMM PF00005; putative cobalt ABC transporter ATP-binding protein complement(2843454..2845166) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914969 YP_495252.1 CDS SAUSA300_2618 NC_007793.1 2845219 2845773 R identified by match to protein family HMM PF07155; hypothetical protein complement(2845219..2845773) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915064 YP_495253.1 CDS SAUSA300_2619 NC_007793.1 2845802 2846650 R identified by match to protein family HMM PF01887; hypothetical protein complement(2845802..2846650) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914010 YP_495254.1 CDS SAUSA300_2620 NC_007793.1 2847030 2847545 D identified by match to protein family HMM PF04264; hypothetical protein 2847030..2847545 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913237 YP_495255.1 CDS SAUSA300_2621 NC_007793.1 2847694 2848665 R identified by similarity to GB:AAW53218.1; hypothetical protein complement(2847694..2848665) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914593 YP_495256.1 CDS SAUSA300_2622 NC_007793.1 2848909 2849865 D identified by match to protein family HMM PF00581; hypothetical protein 2848909..2849865 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913855 YP_495257.1 CDS pcp NC_007793.1 2850017 2850655 D catalyzes the removal of 5-oxoproline from various penultimate amino acid residues except L-proline; pyrrolidone-carboxylate peptidase 2850017..2850655 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913089 YP_495258.1 CDS SAUSA300_2624 NC_007793.1 2850774 2851541 R hypothetical protein complement(2850774..2851541) Staphylococcus aureus subsp. aureus USA300_FPR3757 3912985 YP_495259.1 CDS SAUSA300_2625 NC_007793.1 2851531 2851869 R identified by match to protein family HMM PF03551; PadR family transcriptional regulator complement(2851531..2851869) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913321 YP_495260.1 CDS SAUSA300_2626 NC_007793.1 2852036 2852500 D hypothetical protein 2852036..2852500 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914968 YP_495261.1 CDS SAUSA300_2627 NC_007793.1 2852738 2854156 D identified by match to protein family HMM PF00939; match to protein family HMM PF06808; match to protein family HMM TIGR00785; 2-oxoglutarate/malate translocator 2852738..2854156 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913703 YP_495262.1 CDS rarD NC_007793.1 2854569 2855477 R identified by match to protein family HMM PF00892; match to protein family HMM TIGR00688; RarD protein complement(2854569..2855477) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915315 YP_495263.1 CDS SAUSA300_2629 NC_007793.1 2855702 2856277 D hypothetical protein 2855702..2856277 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913141 YP_495264.1 CDS nixA NC_007793.1 2856442 2857458 D identified by match to protein family HMM PF03824; match to protein family HMM TIGR00802; high-affinity nickel-transporter 2856442..2857458 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914663 YP_495265.1 CDS SAUSA300_2631 NC_007793.1 2857701 2858495 D identified by match to protein family HMM PF00797; putative N-acetyltransferase 2857701..2858495 Staphylococcus aureus subsp. aureus USA300_FPR3757 3915316 YP_495266.1 CDS SAUSA300_2632 NC_007793.1 2858629 2859141 R hypothetical protein complement(2858629..2859141) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913180 YP_495267.1 CDS SAUSA300_2633 NC_007793.1 2859424 2860182 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 2859424..2860182 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913207 YP_495268.1 CDS SAUSA300_2634 NC_007793.1 2860172 2862052 D identified by match to protein family HMM PF02687; ABC transporter permease 2860172..2862052 Staphylococcus aureus subsp. aureus USA300_FPR3757 3913004 YP_495269.1 CDS SAUSA300_2635 NC_007793.1 2862145 2862336 D hypothetical protein 2862145..2862336 Staphylococcus aureus subsp. aureus USA300_FPR3757 3912906 YP_495270.1 CDS SAUSA300_2636 NC_007793.1 2862348 2862884 D identified by match to protein family HMM PF00665; integrase/recombinase 2862348..2862884 Staphylococcus aureus subsp. aureus USA300_FPR3757 3912803 YP_495271.1 CDS SAUSA300_2637 NC_007793.1 2862944 2863441 R hypothetical protein complement(2862944..2863441) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914300 YP_495272.1 CDS SAUSA300_2638 NC_007793.1 2863899 2864090 D hypothetical protein 2863899..2864090 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914974 YP_495273.1 CDS SAUSA300_2639 NC_007793.1 2864456 2864683 D identified by match to protein family HMM PF00313; cold shock protein 2864456..2864683 Staphylococcus aureus subsp. aureus USA300_FPR3757 3915072 YP_495274.1 CDS SAUSA300_2640 NC_007793.1 2864810 2865379 R identified by match to protein family HMM PF01381; putative transcriptional regulator complement(2864810..2865379) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915177 YP_495275.1 CDS SAUSA300_2641 NC_007793.1 2865639 2866034 R hypothetical protein complement(2865639..2866034) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915327 YP_495276.1 CDS SAUSA300_2642 NC_007793.1 2866102 2866455 R hypothetical protein complement(2866102..2866455) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913054 YP_495277.1 CDS SAUSA300_2643 NC_007793.1 2866908 2867747 R identified by match to protein family HMM PF02195; match to protein family HMM TIGR00180; ParB family chromosome partioning protein ParB family complement(2866908..2867747) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914757 YP_495278.1 CDS gidB NC_007793.1 2867790 2868509 R glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA; 16S rRNA methyltransferase GidB complement(2867790..2868509) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913711 YP_495279.2 CDS gidA NC_007793.1 2868509 2870386 R GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA complement(2868509..2870386) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913364 YP_495280.1 CDS trmE NC_007793.1 2870453 2871832 R in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase TrmE complement(2870453..2871832) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913420 YP_495281.1 CDS rnpA NC_007793.1 2871971 2872324 R protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus; this enzyme also cleaves other RNA substrates; ribonuclease P complement(2871971..2872324) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913196 YP_495282.1 CDS rpmH NC_007793.1 2872445 2872582 R in Escherichia coli transcription of this gene is enhanced by polyamines; 50S ribosomal protein L34 complement(2872445..2872582) Staphylococcus aureus subsp. aureus USA300_FPR3757 3913629 SAUSA300_0018 tRNA SAUSA300_0018 NC_007793.1 24178 24252 D tRNA-Glu 24178..24252 Staphylococcus aureus subsp. aureus USA300_FPR3757 3915020 SAUSA300_0019 tRNA SAUSA300_0019 NC_007793.1 24260 24332 D tRNA-Asp 24260..24332 Staphylococcus aureus subsp. aureus USA300_FPR3757 3915021 SAUSA300_0447 tRNA SAUSA300_0447 NC_007793.1 503651 503743 D tRNA-Ser 503651..503743 Staphylococcus aureus subsp. aureus USA300_FPR3757 3915232 SAUSA300_0498 tRNA SAUSA300_0498 NC_007793.1 556324 556399 D tRNA-Ala 556324..556399 Staphylococcus aureus subsp. aureus USA300_FPR3757 3915104 SAUSA300_0500 tRNA SAUSA300_0500 NC_007793.1 558168 558244 D tRNA-Ile 558168..558244 Staphylococcus aureus subsp. aureus USA300_FPR3757 3915331 SAUSA300_0751 tRNA SAUSA300_0751 NC_007793.1 838318 838389 R tRNA-Arg complement(838318..838389) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915107 SAUSA300_0926 tRNA SAUSA300_0926 NC_007793.1 1018760 1018848 R tRNA-Ser complement(1018760..1018848) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915041 SAUSA300_0927 tRNA SAUSA300_0927 NC_007793.1 1018851 1018925 R tRNA-Asn complement(1018851..1018925) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915333 SAUSA300_1066 tRNA SAUSA300_1066 NC_007793.1 1167961 1168034 R tRNA-Arg complement(1167961..1168034) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915228 SAUSA300_1772 tRNA SAUSA300_1772 NC_007793.1 1960620 1960708 R tRNA-Ser complement(1960620..1960708) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915334 SAUSA300_1773 tRNA SAUSA300_1773 NC_007793.1 1960763 1960834 R tRNA-Glu complement(1960763..1960834) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915106 SAUSA300_1774 tRNA SAUSA300_1774 NC_007793.1 1960836 1960910 R tRNA-Asn complement(1960836..1960910) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915225 SAUSA300_1775 tRNA SAUSA300_1775 NC_007793.1 1960925 1960998 R tRNA-Gly complement(1960925..1960998) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915227 SAUSA300_1776 tRNA SAUSA300_1776 NC_007793.1 1961014 1961089 R tRNA-His complement(1961014..1961089) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915343 SAUSA300_1777 tRNA SAUSA300_1777 NC_007793.1 1961103 1961175 R tRNA-Phe complement(1961103..1961175) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914170 SAUSA300_1778 tRNA SAUSA300_1778 NC_007793.1 1961192 1961267 R tRNA-Asp complement(1961192..1961267) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914171 SAUSA300_1779 tRNA SAUSA300_1779 NC_007793.1 1961289 1961362 R tRNA-Met complement(1961289..1961362) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915345 SAUSA300_1811 tRNA SAUSA300_1811 NC_007793.1 1995143 1995226 R tRNA-Leu complement(1995143..1995226) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915226 SAUSA300_1812 tRNA SAUSA300_1812 NC_007793.1 1995265 1995339 R tRNA-OTHER complement(1995265..1995339) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914177 SAUSA300_1813 tRNA SAUSA300_1813 NC_007793.1 1995443 1995517 R tRNA-Gly complement(1995443..1995517) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915336 SAUSA300_1814 tRNA SAUSA300_1814 NC_007793.1 1995525 1995598 R tRNA-Cys complement(1995525..1995598) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915017 SAUSA300_1815 tRNA SAUSA300_1815 NC_007793.1 1995604 1995675 R tRNA-Gln complement(1995604..1995675) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914172 SAUSA300_1816 tRNA SAUSA300_1816 NC_007793.1 1995687 1995759 R tRNA-His complement(1995687..1995759) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915340 SAUSA300_1817 tRNA SAUSA300_1817 NC_007793.1 1995762 1995835 R tRNA-Trp complement(1995762..1995835) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915108 SAUSA300_1818 tRNA SAUSA300_1818 NC_007793.1 1995851 1995931 R tRNA-Tyr complement(1995851..1995931) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915229 SAUSA300_1819 tRNA SAUSA300_1819 NC_007793.1 1995937 1996012 R tRNA-Thr complement(1995937..1996012) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914174 SAUSA300_1820 tRNA SAUSA300_1820 NC_007793.1 1996020 1996092 R tRNA-Phe complement(1996020..1996092) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914173 SAUSA300_1821 tRNA SAUSA300_1821 NC_007793.1 1996111 1996186 R tRNA-Asp complement(1996111..1996186) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915335 SAUSA300_1822 tRNA SAUSA300_1822 NC_007793.1 1996196 1996269 R tRNA-Met complement(1996196..1996269) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915014 SAUSA300_1823 tRNA SAUSA300_1823 NC_007793.1 1996284 1996376 R tRNA-Ser complement(1996284..1996376) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915100 SAUSA300_1824 tRNA SAUSA300_1824 NC_007793.1 1996415 1996490 R tRNA-Asp complement(1996415..1996490) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915346 SAUSA300_1825 tRNA SAUSA300_1825 NC_007793.1 1996501 1996590 R tRNA-Ser complement(1996501..1996590) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915233 SAUSA300_1826 tRNA SAUSA300_1826 NC_007793.1 1996600 1996673 R tRNA-Met complement(1996600..1996673) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914169 SAUSA300_1827 tRNA SAUSA300_1827 NC_007793.1 1996699 1996775 R tRNA-Met complement(1996699..1996775) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915019 SAUSA300_1828 tRNA SAUSA300_1828 NC_007793.1 1996797 1996872 R tRNA-Ala complement(1996797..1996872) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915103 SAUSA300_1829 tRNA SAUSA300_1829 NC_007793.1 1996890 1996963 R tRNA-Pro complement(1996890..1996963) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914175 SAUSA300_1830 tRNA SAUSA300_1830 NC_007793.1 1996973 1997046 R tRNA-Arg complement(1996973..1997046) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915101 SAUSA300_1831 tRNA SAUSA300_1831 NC_007793.1 1997065 1997153 R tRNA-Leu complement(1997065..1997153) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915339 SAUSA300_1832 tRNA SAUSA300_1832 NC_007793.1 1997164 1997238 R tRNA-Gly complement(1997164..1997238) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915230 SAUSA300_1833 tRNA SAUSA300_1833 NC_007793.1 1997242 1997323 R tRNA-Leu complement(1997242..1997323) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915332 SAUSA300_1834 tRNA SAUSA300_1834 NC_007793.1 1997327 1997402 R tRNA-Lys complement(1997327..1997402) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915341 SAUSA300_1835 tRNA SAUSA300_1835 NC_007793.1 1997408 1997483 R tRNA-Thr complement(1997408..1997483) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914176 SAUSA300_1836 tRNA SAUSA300_1836 NC_007793.1 1997500 1997575 R tRNA-Val complement(1997500..1997575) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915105 SAUSA300_1839 tRNA SAUSA300_1839 NC_007793.1 2000910 2000985 R tRNA-Ala complement(2000910..2000985) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915338 SAUSA300_1840 tRNA SAUSA300_1840 NC_007793.1 2001004 2001080 R tRNA-Ile complement(2001004..2001080) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915337 SAUSA300_2018 tRNA SAUSA300_2018 NC_007793.1 2181139 2181212 R tRNA-Gly complement(2181139..2181212) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915015 SAUSA300_2019 tRNA SAUSA300_2019 NC_007793.1 2181232 2181317 R tRNA-Leu complement(2181232..2181317) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915231 SAUSA300_2116 tRNA SAUSA300_2116 NC_007793.1 2291848 2291923 R tRNA-Lys complement(2291848..2291923) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915016 SAUSA300_2117 tRNA SAUSA300_2117 NC_007793.1 2291927 2292001 R tRNA-Gln complement(2291927..2292001) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915344 SAUSA300_2118 tRNA SAUSA300_2118 NC_007793.1 2292011 2292094 R tRNA-Tyr complement(2292011..2292094) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915342 SAUSA300_2119 tRNA SAUSA300_2119 NC_007793.1 2292124 2292199 R tRNA-Val complement(2292124..2292199) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915102 SAUSA300_2120 tRNA SAUSA300_2120 NC_007793.1 2292207 2292278 R tRNA-Glu complement(2292207..2292278) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915013 SAUSA300_2121 tRNA SAUSA300_2121 NC_007793.1 2292280 2292354 R tRNA-Asn complement(2292280..2292354) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915018 SAUSA300_0455 rRNA rrsA NC_007793.1 512890 514444 D 16S ribosomal RNA 512890..514444 Staphylococcus aureus subsp. aureus USA300_FPR3757 3915349 SAUSA300_0456 rRNA rrlA NC_007793.1 514809 517731 D 23S ribosomal RNA 514809..517731 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914580 SAUSA300_0457 rRNA rrfA NC_007793.1 517804 517918 D 5S ribosomal RNA 517804..517918 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914573 SAUSA300_0497 rRNA rrfG NC_007793.1 556197 556311 D 5S ribosomal RNA 556197..556311 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914579 SAUSA300_0499 rRNA rrsB NC_007793.1 556521 558075 D 16S ribosomal RNA 556521..558075 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914576 SAUSA300_0501 rRNA rrlB NC_007793.1 558412 561334 D 23S ribosomal RNA 558412..561334 Staphylococcus aureus subsp. aureus USA300_FPR3757 3914680 SAUSA300_0502 rRNA rrfB NC_007793.1 561407 561521 D 5S ribosomal RNA 561407..561521 Staphylococcus aureus subsp. aureus USA300_FPR3757 3915347 SAUSA300_1837 rRNA rrfC NC_007793.1 1997587 1997701 R 5S ribosomal RNA complement(1997587..1997701) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914578 SAUSA300_1838 rRNA rrlC NC_007793.1 1997774 2000696 R 23S ribosomal RNA complement(1997774..2000696) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914572 SAUSA300_1841 rRNA rrsC NC_007793.1 2001170 2002724 R 16S ribosomal RNA complement(2001170..2002724) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914574 SAUSA300_2015 rRNA rrfD NC_007793.1 2175811 2175925 R 5S ribosomal RNA complement(2175811..2175925) Staphylococcus aureus subsp. aureus USA300_FPR3757 3915348 SAUSA300_2016 rRNA rrlD NC_007793.1 2175998 2178920 R 23S ribosomal RNA complement(2175998..2178920) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914570 SAUSA300_2017 rRNA rrsD NC_007793.1 2179467 2181021 R 16S ribosomal RNA complement(2179467..2181021) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914575 SAUSA300_2122 rRNA rrfE NC_007793.1 2292365 2292479 R 5S ribosomal RNA complement(2292365..2292479) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914571 SAUSA300_2123 rRNA rrlE NC_007793.1 2292552 2295474 R 23S ribosomal RNA complement(2292552..2295474) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914577 SAUSA300_2124 rRNA rrsE NC_007793.1 2296021 2297575 R 16S ribosomal RNA complement(2296021..2297575) Staphylococcus aureus subsp. aureus USA300_FPR3757 3914681