-- dump date 20140620_075520 -- class Genbank::CDS -- table cds -- table main -- field 1 id -- field 2 GI -- field 3 GeneID -- field 4 chrom_position -- field 5 chromosome -- field 6 codon_start -- field 7 contig -- field 8 description -- field 9 end_pos -- field 10 gene -- field 11 gene_id -- field 12 name -- field 13 organism -- field 14 product -- field 15 protein_id -- field 16 start_pos -- field 17 strand -- field 18 taxid -- field 19 type -- header -- id GI GeneID chrom_position chromosome codon_start contig description end_pos gene gene_id name organism product protein_id start_pos strand taxid type YP_492679.1 87159840 3912719 1..996 1 NC_007790.1 identified by match to protein family HMM PF01446; replication protein 996 3912719 SAUSA300_pUSA010001 Staphylococcus aureus subsp. aureus USA300_FPR3757 replication protein YP_492679.1 1 D 451515 CDS YP_492680.1 87159839 3912718 1348..1464 1 NC_007790.1 hypothetical protein 1464 3912718 SAUSA300_pUSA010002 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_492680.1 1348 D 451515 CDS YP_492681.1 87159842 3912721 1546..1767 1 NC_007790.1 identified by similarity to GB:BAB78430.1; hypothetical protein 1767 3912721 SAUSA300_pUSA010003 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_492681.1 1546 D 451515 CDS YP_492682.1 87159841 3912720 complement(2093..2674) 1 NC_007790.1 hypothetical protein 2674 3912720 SAUSA300_pUSA010004 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_492682.1 2093 R 451515 CDS YP_492683.1 87159838 3912717 2749..2922 1 NC_007790.1 hypothetical protein 2922 3912717 SAUSA300_pUSA010005 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_492683.1 2749 D 451515 CDS YP_492684.1 87159845 3912723 36..1415 1 NC_007791.1 identified by similarity to SP:P23054; match to protein family HMM PF07690; tetracycline resistance protein 1415 3912723 SAUSA300_pUSA020001 Staphylococcus aureus subsp. aureus USA300_FPR3757 tetracycline resistance protein YP_492684.1 36 D 451515 CDS YP_492685.1 87159846 3912724 1601..2842 1 NC_007791.1 identified by similarity to SP:P03864; match to protein family HMM PF01076; plasmid recombination enzyme 2842 3912724 SAUSA300_pUSA020002 Staphylococcus aureus subsp. aureus USA300_FPR3757 plasmid recombination enzyme YP_492685.1 1601 D 451515 CDS YP_492686.1 87159844 3912722 3369..4313 1 NC_007791.1 identified by match to protein family HMM PF02486; replication initiation protein 4313 3912722 SAUSA300_pUSA020003 Staphylococcus aureus subsp. aureus USA300_FPR3757 replication initiation protein YP_492686.1 3369 D 451515 CDS YP_492687.1 87159870 3912737 101..1060 1 NC_007792.1 identified by match to protein family HMM PF06970; replication initiator protein 1060 repA 3912737 repA Staphylococcus aureus subsp. aureus USA300_FPR3757 replication initiator protein YP_492687.1 101 D 451515 CDS YP_492688.1 87159858 3912725 1179..1853 1 NC_007792.1 identified by match to protein family HMM PF00665; IS431mec-like transposase 1853 3912725 SAUSA300_pUSA030002 Staphylococcus aureus subsp. aureus USA300_FPR3757 IS431mec-like transposase YP_492688.1 1179 D 451515 CDS YP_492689.1 87159883 3912750 2162..5236 1 NC_007792.1 IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 2 subfamily; some organisms carry two different copies of this enzyme; in some organisms, the type 2 subfamily is associated with resistance to the antibiotic pseudomonic acid (mupirocin); isoleucyl-tRNA synthetase 5236 ileS 3912750 ileS Staphylococcus aureus subsp. aureus USA300_FPR3757 isoleucyl-tRNA synthetase YP_492689.1 2162 D 451515 CDS YP_492690.1 87159880 3912747 5306..5704 1 NC_007792.1 hypothetical protein in ileS 3'region (ORF C), see GenBank Accession X75439; hypothetical protein 5704 3912747 SAUSA300_pUSA030004 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_492690.1 5306 D 451515 CDS YP_492691.1 87159860 3912727 5734..6408 1 NC_007792.1 identified by match to protein family HMM PF00665; transposase 6408 3912727 SAUSA300_pUSA030005 Staphylococcus aureus subsp. aureus USA300_FPR3757 transposase YP_492691.1 5734 D 451515 CDS YP_492692.1 87159864 3912731 6681..7157 1 NC_007792.1 identified by match to protein family HMM PF05732; replication and maintenance protein 7157 3912731 SAUSA300_pUSA030006 Staphylococcus aureus subsp. aureus USA300_FPR3757 replication and maintenance protein YP_492692.1 6681 D 451515 CDS YP_492693.1 87159879 3912746 7865..8599 1 NC_007792.1 identified by match to protein family HMM PF00398; rRNA adenine N-6-methyltransferase (macrolide-lincosamide-streptogramin B resistance protein) 8599 ermC 3912746 ermC Staphylococcus aureus subsp. aureus USA300_FPR3757 rRNA adenine N-6-methyltransferase (macrolide-lincosamide-streptogramin B resistance protein) YP_492693.1 7865 D 451515 CDS YP_492694.1 87159872 3912739 8896..9570 1 NC_007792.1 identified by match to protein family HMM PF00665; transposase 9570 3912739 SAUSA300_pUSA030008 Staphylococcus aureus subsp. aureus USA300_FPR3757 transposase YP_492694.1 8896 D 451515 CDS YP_492695.1 87159859 3912726 complement(9679..9867) 1 NC_007792.1 putative regulator of transfer genes ArtA 9867 3912726 SAUSA300_pUSA030009 Staphylococcus aureus subsp. aureus USA300_FPR3757 putative regulator of transfer genes ArtA YP_492695.1 9679 R 451515 CDS YP_492696.1 87159868 3912735 10039..11013 1 NC_007792.1 transfer complex protein TraA 11013 traA 3912735 traA Staphylococcus aureus subsp. aureus USA300_FPR3757 transfer complex protein TraA YP_492696.1 10039 D 451515 CDS YP_492697.1 87159875 3912742 11030..11347 1 NC_007792.1 transfer complex protein TraB 11347 traB 3912742 traB Staphylococcus aureus subsp. aureus USA300_FPR3757 transfer complex protein TraB YP_492697.1 11030 D 451515 CDS YP_492698.1 87159849 3912752 11407..11814 1 NC_007792.1 identified by similarity to GB:AAC61955.1; membrane protein TraC 11814 traC 3912752 traC Staphylococcus aureus subsp. aureus USA300_FPR3757 membrane protein TraC YP_492698.1 11407 D 451515 CDS YP_492699.1 87159853 3912756 11798..12484 1 NC_007792.1 hypothetical protein 12484 traD 3912756 traD Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_492699.1 11798 D 451515 CDS YP_492700.1 87159848 3912751 12505..14517 1 NC_007792.1 transfer complex protein TraE 14517 traE 3912751 traE Staphylococcus aureus subsp. aureus USA300_FPR3757 transfer complex protein TraE YP_492700.1 12505 D 451515 CDS YP_492701.1 87159857 3912760 14529..15809 1 NC_007792.1 transfer complex protein TraF 15809 traF 3912760 traF Staphylococcus aureus subsp. aureus USA300_FPR3757 transfer complex protein TraF YP_492701.1 14529 D 451515 CDS YP_492702.1 87159855 3912758 15827..16903 1 NC_007792.1 identified by match to protein family HMM PF05257; transfer complex protein TraG 16903 traG 3912758 traG Staphylococcus aureus subsp. aureus USA300_FPR3757 transfer complex protein TraG YP_492702.1 15827 D 451515 CDS YP_492703.1 87159856 3912759 16913..17398 1 NC_007792.1 identified by similarity to GB:AAC61960.1; transfer complex protein TraH 17398 traH 3912759 traH Staphylococcus aureus subsp. aureus USA300_FPR3757 transfer complex protein TraH YP_492703.1 16913 D 451515 CDS YP_492704.1 87159878 3912745 17414..19516 1 NC_007792.1 identified by match to protein family HMM PF01131; match to protein family HMM PF01751; match to protein family HMM TIGR01056; transfer complex protein TraI (DNA topoisomerase III) 19516 traI 3912745 traI Staphylococcus aureus subsp. aureus USA300_FPR3757 transfer complex protein TraI (DNA topoisomerase III) YP_492704.1 17414 D 451515 CDS YP_492705.1 87159852 3912755 19532..19996 1 NC_007792.1 transfer protein complex TraJ 19996 traJ 3912755 traJ Staphylococcus aureus subsp. aureus USA300_FPR3757 transfer protein complex TraJ YP_492705.1 19532 D 451515 CDS YP_492706.1 87159851 3912754 19993..21633 1 NC_007792.1 identified by match to protein family HMM PF02534; transfer complex protein TraK 21633 traK 3912754 traK Staphylococcus aureus subsp. aureus USA300_FPR3757 transfer complex protein TraK YP_492706.1 19993 D 451515 CDS YP_492707.1 87159873 3912740 21711..22628 1 NC_007792.1 transfer complex protein TraL 22628 traL 3912740 traL Staphylococcus aureus subsp. aureus USA300_FPR3757 transfer complex protein TraL YP_492707.1 21711 D 451515 CDS YP_492708.1 87159881 3912748 22645..23037 1 NC_007792.1 identified by match to protein family HMM PF00436; match to protein family HMM TIGR00621; transfer complex protein TraM 23037 traM 3912748 traM Staphylococcus aureus subsp. aureus USA300_FPR3757 transfer complex protein TraM YP_492708.1 22645 D 451515 CDS YP_492709.1 87159863 3912730 23094..23261 1 NC_007792.1 transfer complex protein TraO 23261 traO 3912730 traO Staphylococcus aureus subsp. aureus USA300_FPR3757 transfer complex protein TraO YP_492709.1 23094 D 451515 CDS YP_492710.1 87159874 3912741 23299..23973 1 NC_007792.1 identified by match to protein family HMM PF00665; transposase 23973 3912741 SAUSA300_pUSA030024 Staphylococcus aureus subsp. aureus USA300_FPR3757 transposase YP_492710.1 23299 D 451515 CDS YP_492711.1 87159850 3912753 24103..24717 1 NC_007792.1 hypothetical protein 24717 3912753 SAUSA300_pUSA030025 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_492711.1 24103 D 451515 CDS YP_492712.1 87159862 3912729 24786..26057 1 NC_007792.1 hypothetical protein 26057 3912729 SAUSA300_pUSA030026 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_492712.1 24786 D 451515 CDS YP_492713.1 87159882 3912749 complement(26099..26515) 1 NC_007792.1 identical to VRA0046 in plasmid pLW1043; hypothetical protein 26515 3912749 SAUSA300_pUSA030027 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_492713.1 26099 R 451515 CDS YP_492714.1 87159861 3912728 26735..27367 1 NC_007792.1 identified by match to protein family HMM PF00239; match to protein family HMM PF02796; resolvase 27367 3912728 SAUSA300_pUSA030028 Staphylococcus aureus subsp. aureus USA300_FPR3757 resolvase YP_492714.1 26735 D 451515 CDS YP_492715.1 87159877 3912744 27649..28428 1 NC_007792.1 hypothetical protein 28428 3912744 SAUSA300_pUSA030029 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_492715.1 27649 D 451515 CDS YP_492716.1 87159865 3912732 28562..30178 1 NC_007792.1 hypothetical protein 30178 3912732 SAUSA300_pUSA030030 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_492716.1 28562 D 451515 CDS YP_492717.1 87159876 3912743 30381..32105 1 NC_007792.1 identical to pSK41 LtrC protein; similar to Lactococcus lactis pRS01 LtrC protein; LtrC-like protein 32105 3912743 SAUSA300_pUSA030031 Staphylococcus aureus subsp. aureus USA300_FPR3757 LtrC-like protein YP_492717.1 30381 D 451515 CDS YP_492718.1 87159854 3912757 complement(33233..34144) 1 NC_007792.1 an authenticated frameshift results in a truncated nickase protein; identified by match to protein family HMM PF03389; oriT nickase 34144 nes 3912757 nes Staphylococcus aureus subsp. aureus USA300_FPR3757 oriT nickase YP_492718.1 33233 R 451515 CDS YP_492719.1 87159866 3912733 34288..34620 1 NC_007792.1 hypothetical protein 34620 3912733 SAUSA300_pUSA030033 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_492719.1 34288 D 451515 CDS YP_492720.1 87159871 3912738 35220..36260 1 NC_007792.1 plasmid segregation protein ParM 36260 3912738 SAUSA300_pUSA030034 Staphylococcus aureus subsp. aureus USA300_FPR3757 plasmid segregation protein ParM YP_492720.1 35220 D 451515 CDS YP_492721.1 87159869 3912736 36263..36592 1 NC_007792.1 plasmid segregation protein ParR 36592 3912736 SAUSA300_pUSA030035 Staphylococcus aureus subsp. aureus USA300_FPR3757 plasmid segregation protein ParR YP_492721.1 36263 D 451515 CDS YP_492722.1 87159867 3912734 complement(36596..36856) 1 NC_007792.1 identified by match to protein family HMM PF01381; hypothetical protein 36856 3912734 SAUSA300_pUSA030036 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_492722.1 36596 R 451515 CDS YP_492723.1 87161673 3914438 544..1905 1 NC_007793.1 binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosomal replication initiation protein 1905 dnaA 3914438 dnaA Staphylococcus aureus subsp. aureus USA300_FPR3757 chromosomal replication initiation protein YP_492723.1 544 D 451515 CDS YP_492724.1 87160973 3915368 2183..3316 1 NC_007793.1 binds the polymerase to DNA and acts as a sliding clamp; DNA polymerase III subunit beta 3316 dnaN 3915368 dnaN Staphylococcus aureus subsp. aureus USA300_FPR3757 DNA polymerase III subunit beta YP_492724.1 2183 D 451515 CDS YP_492725.1 87160250 3915141 3697..3942 1 NC_007793.1 hypothetical protein 3942 3915141 SAUSA300_0003 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_492725.1 3697 D 451515 CDS YP_492726.1 87161857 3913963 3939..5051 1 NC_007793.1 Required for DNA replication; binds preferentially to single-stranded, linear DNA; recombination protein F 5051 recF 3913963 recF Staphylococcus aureus subsp. aureus USA300_FPR3757 recombination protein F YP_492726.1 3939 D 451515 CDS YP_492727.1 87161454 3914127 5061..6995 1 NC_007793.1 identified by match to protein family HMM PF00204; match to protein family HMM PF00986; match to protein family HMM PF01751; match to protein family HMM PF02518; match to protein family HMM TIGR01059; DNA gyrase subunit B 6995 gyrB 3914127 gyrB Staphylococcus aureus subsp. aureus USA300_FPR3757 DNA gyrase subunit B YP_492727.1 5061 D 451515 CDS YP_492728.1 87160436 3912939 7032..9695 1 NC_007793.1 Ser-84->Leu (ciprofloxacin resistant mutation); identified by match to protein family HMM PF00521; match to protein family HMM PF03989; match to protein family HMM TIGR01063; DNA gyrase subunit A 9695 gyrA 3912939 gyrA Staphylococcus aureus subsp. aureus USA300_FPR3757 DNA gyrase subunit A YP_492728.1 7032 D 451515 CDS YP_492729.1 87160041 3913362 complement(9782..10612) 1 NC_007793.1 identified by match to protein family HMM PF01256; match to protein family HMM TIGR00196; hypothetical protein 10612 3913362 SAUSA300_0007 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_492729.1 9782 R 451515 CDS YP_492730.1 87161623 3913478 10920..12434 1 NC_007793.1 catalyzes the degradation of histidine to urocanate and ammmonia; histidine ammonia-lyase 12434 hutH 3913478 hutH Staphylococcus aureus subsp. aureus USA300_FPR3757 histidine ammonia-lyase YP_492730.1 10920 D 451515 CDS YP_492731.1 87160901 3915152 12813..14099 1 NC_007793.1 catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase 14099 serS 3915152 serS Staphylococcus aureus subsp. aureus USA300_FPR3757 seryl-tRNA synthetase YP_492731.1 12813 D 451515 CDS YP_492732.1 87160307 3914543 14749..15444 1 NC_007793.1 identified by match to protein family HMM PF03591; hypothetical protein 15444 3914543 SAUSA300_0010 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_492732.1 14749 D 451515 CDS YP_492733.1 87162161 3915192 15441..15770 1 NC_007793.1 identified by match to protein family HMM PF05437; hypothetical protein 15770 3915192 SAUSA300_0011 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_492733.1 15441 D 451515 CDS YP_492734.1 87160802 3913034 16133..17101 1 NC_007793.1 identified by match to protein family HMM PF00561; putative homoserine O-acetyltransferase 17101 3913034 SAUSA300_0012 Staphylococcus aureus subsp. aureus USA300_FPR3757 putative homoserine O-acetyltransferase YP_492734.1 16133 D 451515 CDS YP_492735.1 87159904 3914950 17392..18330 1 NC_007793.1 hypothetical protein 18330 3914950 SAUSA300_0013 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_492735.1 17392 D 451515 CDS YP_492736.1 87162063 3914242 18345..20312 1 NC_007793.1 identified by match to protein family HMM PF01368; match to protein family HMM PF02272; hypothetical protein 20312 3914242 SAUSA300_0014 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_492736.1 18345 D 451515 CDS YP_492737.1 87161718 3915284 20309..20755 1 NC_007793.1 in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 20755 rplI 3915284 rplI Staphylococcus aureus subsp. aureus USA300_FPR3757 50S ribosomal protein L9 YP_492737.1 20309 D 451515 CDS YP_492738.1 87160622 3913283 20787..22187 1 NC_007793.1 identified by match to protein family HMM PF00772; match to protein family HMM PF03796; match to protein family HMM TIGR00665; replicative DNA helicase 22187 dnaB 3913283 dnaB Staphylococcus aureus subsp. aureus USA300_FPR3757 replicative DNA helicase YP_492738.1 20787 D 451515 CDS YP_492739.1 87160876 3914148 22465..23748 1 NC_007793.1 catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis; adenylosuccinate synthetase 23748 purA 3914148 purA Staphylococcus aureus subsp. aureus USA300_FPR3757 adenylosuccinate synthetase YP_492739.1 22465 D 451515 CDS YP_492740.1 87160310 3914546 24952..25653 1 NC_007793.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator 25653 3914546 SAUSA300_0020 Staphylococcus aureus subsp. aureus USA300_FPR3757 DNA-binding response regulator YP_492740.1 24952 D 451515 CDS YP_492741.1 87161483 3914225 25666..27492 1 NC_007793.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229; sensory box histidine kinase 27492 3914225 SAUSA300_0021 Staphylococcus aureus subsp. aureus USA300_FPR3757 sensory box histidine kinase YP_492741.1 25666 D 451515 CDS YP_492742.1 87162050 3914326 27536..28819 1 NC_007793.1 identified by match to protein family HMM PF07435; hypothetical protein 28819 3914326 SAUSA300_0022 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_492742.1 27536 D 451515 CDS YP_492743.1 87160298 3914534 28820..29608 1 NC_007793.1 hypothetical protein 29608 3914534 SAUSA300_0023 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_492743.1 28820 D 451515 CDS YP_492744.1 87160913 3915164 29998..30798 1 NC_007793.1 identified by match to protein family HMM PF00753; metallo-beta-lactamase family protein 30798 3915164 SAUSA300_0024 Staphylococcus aureus subsp. aureus USA300_FPR3757 metallo-beta-lactamase family protein YP_492744.1 29998 D 451515 CDS YP_492745.1 87161790 3914033 31026..33344 1 NC_007793.1 identified by match to protein family HMM PF00149; match to protein family HMM PF02872; match to protein family HMM TIGR01167; 5'-nucleotidase family protein 33344 3914033 SAUSA300_0025 Staphylococcus aureus subsp. aureus USA300_FPR3757 5'-nucleotidase family protein YP_492745.1 31026 D 451515 CDS YP_492746.1 87161272 3915243 33712..34191 1 NC_007793.1 SPOUT methyltransferase family protein; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA; rRNA large subunit methyltransferase 34191 3915243 SAUSA300_0026 Staphylococcus aureus subsp. aureus USA300_FPR3757 rRNA large subunit methyltransferase YP_492746.1 33712 D 451515 CDS YP_492747.1 87161823 3914659 34513..35769 1 NC_007793.1 hypothetical protein 35769 3914659 SAUSA300_0027 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_492747.1 34513 D 451515 CDS YP_492748.1 87160207 3913080 complement(35877..36551) 1 NC_007793.1 identified by match to protein family HMM PF00665; putative transposase 36551 3913080 SAUSA300_0028 Staphylococcus aureus subsp. aureus USA300_FPR3757 putative transposase YP_492748.1 35877 R 451515 CDS YP_492749.1 87160750 3913413 36809..36976 1 NC_007793.1 hypothetical protein 36976 3913413 SAUSA300_0029 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_492749.1 36809 D 451515 CDS YP_492750.1 87161628 3913483 37813..38556 1 NC_007793.1 identified by match to protein family HMM PF03009; putative glycerophosphoryl diester phosphodiesterase 38556 3913483 SAUSA300_0030 Staphylococcus aureus subsp. aureus USA300_FPR3757 putative glycerophosphoryl diester phosphodiesterase YP_492750.1 37813 D 451515 CDS YP_492751.1 87160887 3912964 38653..39081 1 NC_007793.1 identified by match to protein family HMM PF01575; hypothetical protein 39081 3912964 SAUSA300_0031 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_492751.1 38653 D 451515 CDS YP_492752.1 87161759 3913904 complement(39127..41133) 1 NC_007793.1 identified by match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM PF05223; penicillin-binding protein 2' 41133 mecA 3913904 mecA Staphylococcus aureus subsp. aureus USA300_FPR3757 penicillin-binding protein 2' YP_492752.1 39127 R 451515 CDS YP_492753.1 87162304 3913613 41233..42219 1 NC_007793.1 identified by match to protein family HMM PF05569; methicillin-resistance MecR1 regulatory protein 42219 3913613 SAUSA300_0033 Staphylococcus aureus subsp. aureus USA300_FPR3757 methicillin-resistance MecR1 regulatory protein YP_492753.1 41233 D 451515 CDS YP_492754.1 87161163 3914509 42236..42451 1 NC_007793.1 similar to type I restriction-modification system endonuclease; hypothetical protein 42451 3914509 SAUSA300_0035 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_492754.1 42236 D 451515 CDS YP_492755.1 87160780 3913755 complement(42442..43953) 1 NC_007793.1 identified by match to protein family HMM PF01609; IS1272, transposase 43953 3913755 SAUSA300_0034 Staphylococcus aureus subsp. aureus USA300_FPR3757 IS1272, transposase YP_492755.1 42442 R 451515 CDS YP_492756.1 87161958 3913715 complement(44101..44607) 1 NC_007793.1 identified by match to protein family HMM PF07799; hypothetical protein 44607 3913715 SAUSA300_0036 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_492756.1 44101 R 451515 CDS YP_492757.1 87160426 3913144 complement(45892..47520) 1 NC_007793.1 identified by match to protein family HMM PF00239; match to protein family HMM PF04606; match to protein family HMM PF07508; cassette chromosome recombinase B 47520 ccrB 3913144 ccrB Staphylococcus aureus subsp. aureus USA300_FPR3757 cassette chromosome recombinase B YP_492757.1 45892 R 451515 CDS YP_492758.1 87161136 3913725 complement(47542..48891) 1 NC_007793.1 identified by match to protein family HMM PF00239; match to protein family HMM PF07508; cassette chromosome recombinase A 48891 ccrA 3913725 ccrA Staphylococcus aureus subsp. aureus USA300_FPR3757 cassette chromosome recombinase A YP_492758.1 47542 R 451515 CDS YP_492759.1 87161581 3913650 complement(49125..50912) 1 NC_007793.1 identified by match to protein family HMM PF06048; hypothetical protein 50912 3913650 SAUSA300_0039 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_492759.1 49125 R 451515 CDS YP_492760.1 87160375 3912801 complement(50912..51202) 1 NC_007793.1 identified by match to protein family HMM PF07205; hypothetical protein 51202 3912801 SAUSA300_0040 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_492760.1 50912 R 451515 CDS YP_492761.1 87162236 3914861 51299..52390 1 NC_007793.1 hypothetical protein 52390 3914861 SAUSA300_0041 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_492761.1 51299 D 451515 CDS YP_492762.1 87161505 3913218 53118..54608 1 NC_007793.1 identified by match to protein family HMM PF04326; hypothetical protein 54608 3913218 SAUSA300_0042 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_492762.1 53118 D 451515 CDS YP_492763.1 87160680 3915057 complement(54981..55154) 1 NC_007793.1 hypothetical protein 55154 3915057 SAUSA300_0043 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_492763.1 54981 R 451515 CDS YP_492764.1 87162240 3914865 complement(55232..56236) 1 NC_007793.1 identified by match to protein family HMM PF00753; metallo-beta-lactamase family protein 56236 3914865 SAUSA300_0044 Staphylococcus aureus subsp. aureus USA300_FPR3757 metallo-beta-lactamase family protein YP_492764.1 55232 R 451515 CDS YP_492765.1 87161433 3914082 56489..56860 1 NC_007793.1 identified by match to protein family HMM PF01844; HNH endonuclease family protein 56860 3914082 SAUSA300_0045 Staphylococcus aureus subsp. aureus USA300_FPR3757 HNH endonuclease family protein YP_492765.1 56489 D 451515 CDS YP_492766.1 87160457 3913058 56989..57609 1 NC_007793.1 hypothetical protein 57609 3913058 SAUSA300_0046 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_492766.1 56989 D 451515 CDS YP_492767.1 87161965 3914477 59098..60063 1 NC_007793.1 hypothetical protein 60063 3914477 SAUSA300_0047 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_492767.1 59098 D 451515 CDS YP_492768.1 87161597 3914381 60160..60351 1 NC_007793.1 hypothetical protein 60351 3914381 SAUSA300_0048 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_492768.1 60160 D 451515 CDS YP_492769.1 87160172 3914524 60443..60772 1 NC_007793.1 hypothetical protein 60772 3914524 SAUSA300_0049 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_492769.1 60443 D 451515 CDS YP_492770.1 87160214 3913087 complement(60849..61187) 1 NC_007793.1 hypothetical protein 61187 3913087 SAUSA300_0050 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_492770.1 60849 R 451515 CDS YP_492771.1 87161681 3914446 62607..62789 1 NC_007793.1 hypothetical protein 62789 3914446 SAUSA300_0052 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_492771.1 62607 D 451515 CDS YP_492772.1 87161097 3914303 complement(63100..63597) 1 NC_007793.1 identified by match to protein family HMM PF00583; spermidine N(1)-acetyltransferase 63597 speG 3914303 speG Staphylococcus aureus subsp. aureus USA300_FPR3757 spermidine N(1)-acetyltransferase YP_492772.1 63100 R 451515 CDS YP_492773.1 87160202 3913075 complement(63785..63913) 1 NC_007793.1 hypothetical protein 63913 3913075 SAUSA300_0054 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_492773.1 63785 R 451515 CDS YP_492774.1 87161898 3914409 64125..65222 1 NC_007793.1 alkaliphilic; identified by match to protein family HMM PF00107; alcohol dehydrogenase, zinc-containing 65222 3914409 SAUSA300_0055 Staphylococcus aureus subsp. aureus USA300_FPR3757 alcohol dehydrogenase, zinc-containing YP_492774.1 64125 D 451515 CDS YP_492775.1 87162269 3913187 complement(65715..66218) 1 NC_007793.1 identified by match to protein family HMM PF07799; hypothetical protein 66218 3913187 SAUSA300_0056 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_492775.1 65715 R 451515 CDS YP_492776.1 87160764 3913739 complement(66234..66545) 1 NC_007793.1 identified by match to protein family HMM PF06124; hypothetical protein 66545 3913739 SAUSA300_0057 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_492776.1 66234 R 451515 CDS YP_492777.1 87161043 3912888 complement(66547..66639) 1 NC_007793.1 hypothetical protein 66639 3912888 SAUSA300_0058 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_492777.1 66547 R 451515 CDS YP_492778.1 87161604 3914388 complement(66632..66982) 1 NC_007793.1 identified by match to protein family HMM PF06106; hypothetical protein 66982 3914388 SAUSA300_0059 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_492778.1 66632 R 451515 CDS YP_492779.1 87162436 3915032 67966..68790 1 NC_007793.1 identified by similarity to GB:CAC98906.1; match to protein family HMM PF00665; putative transposase 68790 3915032 SAUSA300_0060 Staphylococcus aureus subsp. aureus USA300_FPR3757 putative transposase YP_492779.1 67966 D 451515 CDS YP_492780.1 87160434 3912937 complement(68890..69819) 1 NC_007793.1 catalyzes the reversible synthesis of carbamate and ATP from carbamoyl phosphate and ADP; carbamate kinase 69819 arcC 3912937 arcC Staphylococcus aureus subsp. aureus USA300_FPR3757 carbamate kinase YP_492780.1 68890 R 451515 CDS YP_492781.1 87161371 3914770 complement(69839..70837) 1 NC_007793.1 catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation; ornithine carbamoyltransferase 70837 arcB 3914770 arcB Staphylococcus aureus subsp. aureus USA300_FPR3757 ornithine carbamoyltransferase YP_492781.1 69839 R 451515 CDS YP_492782.1 87159898 3914944 complement(70875..71564) 1 NC_007793.1 identified by match to protein family HMM PF00027; cyclic nucleotide-binding domain-containing protein 71564 3914944 SAUSA300_0063 Staphylococcus aureus subsp. aureus USA300_FPR3757 cyclic nucleotide-binding domain-containing protein YP_492782.1 70875 R 451515 CDS YP_492783.1 87160589 3915208 complement(71606..73027) 1 NC_007793.1 identified by match to protein family HMM PF00324; match to protein family HMM TIGR00905; arginine/oirnithine antiporter 73027 arcD 3915208 arcD Staphylococcus aureus subsp. aureus USA300_FPR3757 arginine/oirnithine antiporter YP_492783.1 71606 R 451515 CDS YP_492784.1 87161307 3914803 complement(73113..74348) 1 NC_007793.1 catalyzes the degradation of arginine to citruline and ammonia; arginine deiminase 74348 arcA 3914803 arcA Staphylococcus aureus subsp. aureus USA300_FPR3757 arginine deiminase YP_492784.1 73113 R 451515 CDS YP_492785.1 87162413 3915260 complement(74617..75063) 1 NC_007793.1 identified by match to protein family HMM PF02863; arginine repressor 75063 argR 3915260 argR Staphylococcus aureus subsp. aureus USA300_FPR3757 arginine repressor YP_492785.1 74617 R 451515 CDS YP_492786.1 87162383 3913536 75565..75996 1 NC_007793.1 universal stress protein 75996 3913536 SAUSA300_0067 Staphylococcus aureus subsp. aureus USA300_FPR3757 universal stress protein YP_492786.1 75565 D 451515 CDS YP_492787.1 87160236 3913774 complement(76073..76225) 1 NC_007793.1 identified by similarity to GB:CAB96929.1; cadmium-exporting ATPase, truncation 76225 3913774 SAUSA300_0068 Staphylococcus aureus subsp. aureus USA300_FPR3757 cadmium-exporting ATPase, truncation YP_492787.1 76073 R 451515 CDS YP_492788.1 87162009 3915380 77130..77945 1 NC_007793.1 identified by match to protein family HMM PF00561; putative lysophospholipase 77945 3915380 SAUSA300_0070 Staphylococcus aureus subsp. aureus USA300_FPR3757 putative lysophospholipase YP_492788.1 77130 D 451515 CDS YP_492789.1 87161793 3914036 78432..79445 1 NC_007793.1 identified by match to protein family HMM PF02371; ISSep1-like transposase 79445 3914036 SAUSA300_0071 Staphylococcus aureus subsp. aureus USA300_FPR3757 ISSep1-like transposase YP_492789.1 78432 D 451515 CDS YP_492790.1 87160872 3914144 79759..80397 1 NC_007793.1 hypothetical protein 80397 3914144 SAUSA300_0072 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_492790.1 79759 D 451515 CDS YP_492791.1 87161538 3914664 80394..81947 1 NC_007793.1 identified by similarity to GB:AAU24316.1; match to protein family HMM PF00496; peptide ABC transporter peptide-binding protein 81947 3914664 SAUSA300_0073 Staphylococcus aureus subsp. aureus USA300_FPR3757 peptide ABC transporter peptide-binding protein YP_492791.1 80394 D 451515 CDS YP_492792.1 87161107 3914313 81950..82906 1 NC_007793.1 identified by match to protein family HMM PF00528; oligopeptide permease, channel-forming protein 82906 opp-3B 3914313 opp-3B Staphylococcus aureus subsp. aureus USA300_FPR3757 oligopeptide permease, channel-forming protein YP_492792.1 81950 D 451515 CDS YP_492793.1 87160395 3912840 82906..83673 1 NC_007793.1 identified by similarity to GB:AAL94601.1; match to protein family HMM PF00528; oligopeptide permease, channel-forming protein 83673 opp-3C 3912840 opp-3C Staphylococcus aureus subsp. aureus USA300_FPR3757 oligopeptide permease, channel-forming protein YP_492793.1 82906 D 451515 CDS YP_492794.1 87159972 3914824 83640..84407 1 NC_007793.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 84407 3914824 SAUSA300_0076 Staphylococcus aureus subsp. aureus USA300_FPR3757 ABC transporter ATP-binding protein YP_492794.1 83640 D 451515 CDS YP_492795.1 87162114 3913108 84400..85035 1 NC_007793.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 85035 3913108 SAUSA300_0077 Staphylococcus aureus subsp. aureus USA300_FPR3757 ABC transporter ATP-binding protein YP_492795.1 84400 D 451515 CDS YP_492796.1 87161242 3914796 86094..88118 1 NC_007793.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525; ATPase copper transport 88118 copA 3914796 copA Staphylococcus aureus subsp. aureus USA300_FPR3757 ATPase copper transport YP_492796.1 86094 D 451515 CDS YP_492797.1 87160733 3913434 88136..88681 1 NC_007793.1 identified by match to protein family HMM PF07563; putative lipoprotein 88681 3913434 SAUSA300_0079 Staphylococcus aureus subsp. aureus USA300_FPR3757 putative lipoprotein YP_492797.1 88136 D 451515 CDS YP_492798.1 87160181 3913249 89207..89299 1 NC_007793.1 hypothetical protein 89299 3913249 SAUSA300_0080 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_492798.1 89207 D 451515 CDS YP_492799.1 87161877 3914565 89446..91197 1 NC_007793.1 hypothetical protein 91197 3914565 SAUSA300_0081 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_492799.1 89446 D 451515 CDS YP_492800.1 87160657 3913981 complement(91291..91743) 1 NC_007793.1 hypothetical protein 91743 3913981 SAUSA300_0082 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_492800.1 91291 R 451515 CDS YP_492801.1 87160645 3913969 complement(91958..92713) 1 NC_007793.1 identified by match to protein family HMM PF01925; hypothetical protein 92713 3913969 SAUSA300_0083 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_492801.1 91958 R 451515 CDS YP_492802.1 87159958 3913845 complement(92713..92973) 1 NC_007793.1 identified by match to protein family HMM PF02583; hypothetical protein 92973 3913845 SAUSA300_0084 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_492802.1 92713 R 451515 CDS YP_492803.1 87162131 3913595 93110..94177 1 NC_007793.1 identified by match to protein family HMM PF00581; match to protein family HMM PF01206; hypothetical protein 94177 3913595 SAUSA300_0085 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_492803.1 93110 D 451515 CDS YP_492804.1 87160960 3915355 94208..95542 1 NC_007793.1 identified by match to protein family HMM PF00581; match to protein family HMM PF00753; hypothetical protein 95542 3915355 SAUSA300_0086 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_492804.1 94208 D 451515 CDS YP_492805.1 87160921 3914359 complement(97021..97122) 1 NC_007793.1 hypothetical protein 97122 3914359 SAUSA300_0088 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_492805.1 97021 R 451515 CDS YP_492806.1 87161344 3912861 complement(97421..98353) 1 NC_007793.1 identified by match to protein family HMM PF01207; hypothetical protein 98353 3912861 SAUSA300_0089 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_492806.1 97421 R 451515 CDS YP_492807.1 87161874 3914562 98968..99264 1 NC_007793.1 identified by match to protein family HMM PF04993; hypothetical protein 99264 3914562 SAUSA300_0090 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_492807.1 98968 D 451515 CDS YP_492808.1 87160166 3914518 complement(99336..100556) 1 NC_007793.1 identified by match to protein family HMM PF07690; putative permease 100556 3914518 SAUSA300_0091 Staphylococcus aureus subsp. aureus USA300_FPR3757 putative permease YP_492808.1 99336 R 451515 CDS YP_492809.1 87160051 3912904 complement(100549..101010) 1 NC_007793.1 hypothetical protein 101010 3912904 SAUSA300_0092 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_492809.1 100549 R 451515 CDS YP_492810.1 87160804 3913036 101212..102072 1 NC_007793.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466; transcriptional regulator 102072 3913036 SAUSA300_0093 Staphylococcus aureus subsp. aureus USA300_FPR3757 transcriptional regulator YP_492810.1 101212 D 451515 CDS YP_492811.1 87162429 3915025 complement(102427..102960) 1 NC_007793.1 hypothetical protein 102960 3915025 SAUSA300_0094 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_492811.1 102427 R 451515 CDS YP_492812.1 87160449 3912952 103051..103794 1 NC_007793.1 identified by match to protein family HMM PF00126; transcriptional regulator 103794 3912952 SAUSA300_0095 Staphylococcus aureus subsp. aureus USA300_FPR3757 transcriptional regulator YP_492812.1 103051 D 451515 CDS YP_492813.1 87161497 3913210 104228..104830 1 NC_007793.1 hypothetical protein 104830 3913210 SAUSA300_0096 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_492813.1 104228 D 451515 CDS YP_492814.1 87161985 3914882 105097..108249 1 NC_007793.1 hypothetical protein 108249 3914882 SAUSA300_0097 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_492814.1 105097 D 451515 CDS YP_492815.1 87160412 3913130 108306..108788 1 NC_007793.1 hypothetical protein 108788 3913130 SAUSA300_0098 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_492815.1 108306 D 451515 CDS YP_492816.1 87162123 3913587 108993..109979 1 NC_007793.1 identified by match to protein family HMM PF00388; 1-phosphatidylinositol phosphodiesterase 109979 plc 3913587 plc Staphylococcus aureus subsp. aureus USA300_FPR3757 1-phosphatidylinositol phosphodiesterase YP_492816.1 108993 D 451515 CDS YP_492817.1 87161540 3914666 110200..110970 1 NC_007793.1 identified by match to protein family HMM PF04507; match to protein family HMM TIGR01742; tandem lipoprotein 110970 3914666 SAUSA300_0100 Staphylococcus aureus subsp. aureus USA300_FPR3757 tandem lipoprotein YP_492817.1 110200 D 451515 CDS YP_492818.1 87161129 3913718 111022..111792 1 NC_007793.1 identified by match to protein family HMM PF04507; match to protein family HMM TIGR01742; tandem lipoprotein 111792 3913718 SAUSA300_0101 Staphylococcus aureus subsp. aureus USA300_FPR3757 tandem lipoprotein YP_492818.1 111022 D 451515 CDS YP_492819.1 87160569 3914995 111856..112626 1 NC_007793.1 identified by match to protein family HMM PF04507; match to protein family HMM TIGR01742; tandem lipoprotein 112626 3914995 SAUSA300_0102 Staphylococcus aureus subsp. aureus USA300_FPR3757 tandem lipoprotein YP_492819.1 111856 D 451515 CDS YP_492820.1 87162291 3913600 112693..113460 1 NC_007793.1 identified by match to protein family HMM PF04507; match to protein family HMM TIGR01742; tandem lipoprotein 113460 3913600 SAUSA300_0103 Staphylococcus aureus subsp. aureus USA300_FPR3757 tandem lipoprotein YP_492820.1 112693 D 451515 CDS YP_492821.1 87161751 3913896 113593..115791 1 NC_007793.1 identified by match to protein family HMM PF00165; AraC family transcriptional regulator 115791 3913896 SAUSA300_0104 Staphylococcus aureus subsp. aureus USA300_FPR3757 AraC family transcriptional regulator YP_492821.1 113593 D 451515 CDS YP_492822.1 87161414 3914102 115942..117120 1 NC_007793.1 identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891; M20/M25/M40 family peptidase 117120 3914102 SAUSA300_0105 Staphylococcus aureus subsp. aureus USA300_FPR3757 M20/M25/M40 family peptidase YP_492822.1 115942 D 451515 CDS YP_492823.1 87160979 3913311 117122..118510 1 NC_007793.1 identified by match to protein family HMM PF07690; putative drug transporter 118510 3913311 SAUSA300_0106 Staphylococcus aureus subsp. aureus USA300_FPR3757 putative drug transporter YP_492823.1 117122 D 451515 CDS YP_492824.1 87159888 3914110 complement(119003..120664) 1 NC_007793.1 identified by match to protein family HMM PF02690; match to protein family HMM TIGR00704; Na/Pi cotransporter family protein 120664 3914110 SAUSA300_0107 Staphylococcus aureus subsp. aureus USA300_FPR3757 Na/Pi cotransporter family protein YP_492824.1 119003 R 451515 CDS YP_492825.1 87161006 3913572 complement(120990..122765) 1 NC_007793.1 in group A Streptococci this protein was found to cross react with anti myosin antibodies and may play a role in rheumatic fever; myosin-cross-reactive antigen 122765 3913572 SAUSA300_0108 Staphylococcus aureus subsp. aureus USA300_FPR3757 myosin-cross-reactive antigen YP_492825.1 120990 R 451515 CDS YP_492826.1 87161281 3915252 complement(122939..123811) 1 NC_007793.1 identified by match to protein family HMM PF00892; integral membrane domain-containing protein 123811 3915252 SAUSA300_0109 Staphylococcus aureus subsp. aureus USA300_FPR3757 integral membrane domain-containing protein YP_492826.1 122939 R 451515 CDS YP_492827.1 87161855 3913961 123924..125321 1 NC_007793.1 identified by match to protein family HMM PF00155; match to protein family HMM PF00392; GntR family transcriptional regulator 125321 3913961 SAUSA300_0110 Staphylococcus aureus subsp. aureus USA300_FPR3757 GntR family transcriptional regulator YP_492827.1 123924 D 451515 CDS YP_492828.1 87160686 3914180 125511..125984 1 NC_007793.1 identified by match to protein family HMM PF07853; hypothetical protein 125984 3914180 SAUSA300_0111 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_492828.1 125511 D 451515 CDS YP_492829.1 87160277 3913484 126246..127838 1 NC_007793.1 identified by match to protein family HMM PF02652; match to protein family HMM TIGR00795; L-lactate permease 127838 lctP 3913484 lctP Staphylococcus aureus subsp. aureus USA300_FPR3757 L-lactate permease YP_492829.1 126246 D 451515 CDS YP_492830.1 87161843 3913949 complement(128167..129693) 1 NC_007793.1 identified by match to protein family HMM PF00746; match to protein family HMM PF01476; match to protein family HMM PF02216; match to protein family HMM PF03373; match to protein family HMM PF04650; match to protein family HMM TIGR01167; match to protein family HMM TIGR01168; immunoglobulin G binding protein A 129693 3913949 SAUSA300_0113 Staphylococcus aureus subsp. aureus USA300_FPR3757 immunoglobulin G binding protein A YP_492830.1 128167 R 451515 CDS YP_492831.1 87161448 3914121 complement(130114..130866) 1 NC_007793.1 identified by match to protein family HMM PF01047; match to protein family HMM TIGR01889; accessory regulator 130866 3914121 SAUSA300_0114 Staphylococcus aureus subsp. aureus USA300_FPR3757 accessory regulator YP_492831.1 130114 R 451515 CDS YP_492832.1 87160394 3912839 complement(131235..132233) 1 NC_007793.1 identified by match to protein family HMM PF01032; iron compound ABC transporter permease SirC 132233 sirC 3912839 sirC Staphylococcus aureus subsp. aureus USA300_FPR3757 iron compound ABC transporter permease SirC YP_492832.1 131235 R 451515 CDS YP_492833.1 87160001 3914429 complement(132230..133225) 1 NC_007793.1 identified by match to protein family HMM PF01032; iron compound ABC transporter permease SirB 133225 sirB 3914429 sirB Staphylococcus aureus subsp. aureus USA300_FPR3757 iron compound ABC transporter permease SirB YP_492833.1 132230 R 451515 CDS YP_492834.1 87161572 3913641 complement(133241..134233) 1 NC_007793.1 identified by match to protein family HMM PF01497; iron compound ABC transporter iron compound-binding protein SirA 134233 sirA 3913641 sirA Staphylococcus aureus subsp. aureus USA300_FPR3757 iron compound ABC transporter iron compound-binding protein SirA YP_492834.1 133241 R 451515 CDS YP_492835.1 87162005 3915376 134524..135444 1 NC_007793.1 identified by match to protein family HMM PF00291; pyridoxal-phosphate dependent enzyme superfamily protein 135444 3915376 SAUSA300_0118 Staphylococcus aureus subsp. aureus USA300_FPR3757 pyridoxal-phosphate dependent enzyme superfamily protein YP_492835.1 134524 D 451515 CDS YP_492836.1 87159979 3914831 135441..136451 1 NC_007793.1 identified by match to protein family HMM PF02423; ornithine cyclodeaminase 136451 3914831 SAUSA300_0119 Staphylococcus aureus subsp. aureus USA300_FPR3757 ornithine cyclodeaminase YP_492836.1 135441 D 451515 CDS YP_492837.1 87160446 3912949 136472..138226 1 NC_007793.1 identified by match to protein family HMM PF04183; IucC family siderophore biosynthesis protein 138226 sbnC 3912949 sbnC Staphylococcus aureus subsp. aureus USA300_FPR3757 IucC family siderophore biosynthesis protein YP_492837.1 136472 D 451515 CDS YP_492838.1 87161745 3913031 138219..139475 1 NC_007793.1 identified by match to protein family HMM PF07690; putative drug transporter 139475 3913031 SAUSA300_0121 Staphylococcus aureus subsp. aureus USA300_FPR3757 putative drug transporter YP_492838.1 138219 D 451515 CDS YP_492839.1 87162288 3915328 139465..141201 1 NC_007793.1 identified by match to protein family HMM PF04183; IucA/IucC family siderophore biosynthesis protein 141201 3915328 SAUSA300_0122 Staphylococcus aureus subsp. aureus USA300_FPR3757 IucA/IucC family siderophore biosynthesis protein YP_492839.1 139465 D 451515 CDS YP_492840.1 87160266 3913668 141110..142960 1 NC_007793.1 identified by match to protein family HMM PF04183; IucC family siderophore biosynthesis protein 142960 3913668 SAUSA300_0123 Staphylococcus aureus subsp. aureus USA300_FPR3757 IucC family siderophore biosynthesis protein YP_492840.1 141110 D 451515 CDS YP_492841.1 87160851 3913397 142935..143711 1 NC_007793.1 identified by match to protein family HMM PF03328; HPCH/HPAI aldolase family protein 143711 3913397 SAUSA300_0124 Staphylococcus aureus subsp. aureus USA300_FPR3757 HPCH/HPAI aldolase family protein YP_492841.1 142935 D 451515 CDS YP_492842.1 87160623 3913284 143711..144913 1 NC_007793.1 identified by match to protein family HMM PF00278; match to protein family HMM PF02784; pyridoxal-dependent decarboxylase 144913 3913284 SAUSA300_0125 Staphylococcus aureus subsp. aureus USA300_FPR3757 pyridoxal-dependent decarboxylase YP_492842.1 143711 D 451515 CDS YP_492843.1 87161161 3914506 144917..145681 1 NC_007793.1 identified by match to protein family HMM PF02195; hypothetical protein 145681 3914506 SAUSA300_0126 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_492843.1 144917 D 451515 CDS YP_492844.1 87161743 3913029 145877..146284 1 NC_007793.1 hypothetical protein 146284 3913029 SAUSA300_0127 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_492844.1 145877 D 451515 CDS YP_492845.1 87160739 3913440 146334..146960 1 NC_007793.1 hypothetical protein 146960 3913440 SAUSA300_0128 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_492845.1 146334 D 451515 CDS YP_492846.1 87162164 3915195 147172..147948 1 NC_007793.1 identified by match to protein family HMM PF00106; match to protein family HMM TIGR02415; acetoin reductase 147948 3915195 SAUSA300_0129 Staphylococcus aureus subsp. aureus USA300_FPR3757 acetoin reductase YP_492846.1 147172 D 451515 CDS YP_492847.1 87162155 3915186 148284..149264 1 NC_007793.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF07993; NAD-dependent epimerase/dehydratase family protein 149264 3915186 SAUSA300_0130 Staphylococcus aureus subsp. aureus USA300_FPR3757 NAD-dependent epimerase/dehydratase family protein YP_492847.1 148284 D 451515 CDS YP_492848.1 87160450 3912953 149227..149919 1 NC_007793.1 identified by match to protein family HMM PF02397; putative sugar transferase 149919 3912953 SAUSA300_0131 Staphylococcus aureus subsp. aureus USA300_FPR3757 putative sugar transferase YP_492848.1 149227 D 451515 CDS YP_492849.1 87161056 3912766 150129..151295 1 NC_007793.1 identified by match to protein family HMM PF00534; glycosyl transferase, group 1 family protein 151295 3912766 SAUSA300_0132 Staphylococcus aureus subsp. aureus USA300_FPR3757 glycosyl transferase, group 1 family protein YP_492849.1 150129 D 451515 CDS YP_492850.1 87161321 3915292 151276..152514 1 NC_007793.1 identified by match to protein family HMM PF04932; hypothetical protein 152514 3915292 SAUSA300_0133 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_492850.1 151276 D 451515 CDS YP_492851.1 87161267 3915238 152504..153934 1 NC_007793.1 identified by match to protein family HMM PF01943; polysaccharide extrusion protein 153934 3915238 SAUSA300_0134 Staphylococcus aureus subsp. aureus USA300_FPR3757 polysaccharide extrusion protein YP_492851.1 152504 D 451515 CDS YP_492852.1 87161851 3913957 154202..154801 1 NC_007793.1 identified by match to protein family HMM PF00081; match to protein family HMM PF02777; Fe/Mn family superoxide dismutase 154801 3913957 SAUSA300_0135 Staphylococcus aureus subsp. aureus USA300_FPR3757 Fe/Mn family superoxide dismutase YP_492852.1 154202 D 451515 CDS YP_492853.1 87160939 3913779 155169..155894 1 NC_007793.1 identified by match to protein family HMM PF00746; match to protein family HMM TIGR01167; cell wall surface anchor family protein 155894 3913779 SAUSA300_0136 Staphylococcus aureus subsp. aureus USA300_FPR3757 cell wall surface anchor family protein YP_492853.1 155169 D 451515 CDS YP_492854.1 87162100 3913094 complement(156086..156841) 1 NC_007793.1 identified by match to protein family HMM PF00392; GntR family transcriptional regulator 156841 3913094 SAUSA300_0137 Staphylococcus aureus subsp. aureus USA300_FPR3757 GntR family transcriptional regulator YP_492854.1 156086 R 451515 CDS YP_492855.1 87159961 3913848 157077..157784 1 NC_007793.1 catalyzes the reversible phosphorolysis of ribonucleosides and 2'- deoxyribonucleosides to the free base and (2'-deoxy)ribose-1- phosphate; purine nucleoside phosphorylase 157784 deoD 3913848 deoD Staphylococcus aureus subsp. aureus USA300_FPR3757 purine nucleoside phosphorylase YP_492855.1 157077 D 451515 CDS YP_492856.1 87160648 3913972 157791..159143 1 NC_007793.1 identified by match to protein family HMM PF07690; putative tetracycline resistance protein 159143 3913972 SAUSA300_0139 Staphylococcus aureus subsp. aureus USA300_FPR3757 putative tetracycline resistance protein YP_492856.1 157791 D 451515 CDS YP_492857.1 87161186 3914897 159224..159886 1 NC_007793.1 catalyzes the formation of D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-D-ribose-5-phosphate; deoxyribose-phosphate aldolase 159886 deoC 3914897 deoC Staphylococcus aureus subsp. aureus USA300_FPR3757 deoxyribose-phosphate aldolase YP_492857.1 159224 D 451515 CDS YP_492858.1 87162049 3914325 159914..161092 1 NC_007793.1 catalyzes the transfer of phosphate between the C1 and C5 carbons of pentose; phosphopentomutase 161092 deoB 3914325 deoB Staphylococcus aureus subsp. aureus USA300_FPR3757 phosphopentomutase YP_492858.1 159914 D 451515 CDS YP_492859.1 87160389 3912815 complement(161223..162038) 1 NC_007793.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01097; phosphonate ABC transporter permease 162038 phnE 3912815 phnE Staphylococcus aureus subsp. aureus USA300_FPR3757 phosphonate ABC transporter permease YP_492859.1 161223 R 451515 CDS YP_492860.1 87160558 3913513 complement(162035..162835) 1 NC_007793.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01097; phosphonate ABC transporter permease 162835 phnE 3913513 phnE Staphylococcus aureus subsp. aureus USA300_FPR3757 phosphonate ABC transporter permease YP_492860.1 162035 R 451515 CDS YP_492861.1 87161521 3913195 complement(162837..163610) 1 NC_007793.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR02315; phosphonate ABC transporter ATP-binding protein 163610 phnC 3913195 phnC Staphylococcus aureus subsp. aureus USA300_FPR3757 phosphonate ABC transporter ATP-binding protein YP_492861.1 162837 R 451515 CDS YP_492862.1 87162344 3913828 complement(163824..164780) 1 NC_007793.1 identified by match to protein family HMM TIGR01098; phosphonate ABC transporter phosphonate-binding protein 164780 3913828 SAUSA300_0145 Staphylococcus aureus subsp. aureus USA300_FPR3757 phosphonate ABC transporter phosphonate-binding protein YP_492862.1 163824 R 451515 CDS YP_492863.1 87162012 3915383 165009..166553 1 NC_007793.1 hypothetical protein 166553 3915383 SAUSA300_0146 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_492863.1 165009 D 451515 CDS YP_492864.1 87161080 3914266 166604..168139 1 NC_007793.1 identified by match to protein family HMM PF00149; match to protein family HMM PF02872; 5' nucleotidase family protein 168139 3914266 SAUSA300_0147 Staphylococcus aureus subsp. aureus USA300_FPR3757 5' nucleotidase family protein YP_492864.1 166604 D 451515 CDS YP_492865.1 87161927 3914587 168223..168426 1 NC_007793.1 hypothetical protein 168426 3914587 SAUSA300_0148 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_492865.1 168223 D 451515 CDS YP_492866.1 87160829 3913550 171207..173816 1 NC_007793.1 identified by match to protein family HMM PF00171; match to protein family HMM PF00465; bifunctional acetaldehyde-CoA/alcohol dehydrogenase 173816 adhE 3913550 adhE Staphylococcus aureus subsp. aureus USA300_FPR3757 bifunctional acetaldehyde-CoA/alcohol dehydrogenase YP_492866.1 171207 D 451515 CDS YP_492867.1 87160118 3913382 174161..174829 1 NC_007793.1 identified by match to protein family HMM PF02706; match to protein family HMM TIGR01006; capsular polysaccharide biosynthesis protein Cap5A 174829 cap5A 3913382 cap5A Staphylococcus aureus subsp. aureus USA300_FPR3757 capsular polysaccharide biosynthesis protein Cap5A YP_492867.1 174161 D 451515 CDS YP_492868.1 87161167 3914741 174845..175531 1 NC_007793.1 identified by match to protein family HMM TIGR01007; capsular polysaccharide biosynthesis protein Cap5B 175531 cap5B 3914741 cap5B Staphylococcus aureus subsp. aureus USA300_FPR3757 capsular polysaccharide biosynthesis protein Cap5B YP_492868.1 174845 D 451515 CDS YP_492869.1 87160783 3914603 175534..176298 1 NC_007793.1 identified by match to protein family HMM PF02811; capsular polysaccharide biosynthesis protein Cap5C 176298 cap5C 3914603 cap5C Staphylococcus aureus subsp. aureus USA300_FPR3757 capsular polysaccharide biosynthesis protein Cap5C YP_492869.1 175534 D 451515 CDS YP_492870.1 87162229 3914004 178132..179160 1 NC_007793.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF07993; capsular polysaccharide biosynthesis protein Cap5E 179160 cap5E 3914004 cap5E Staphylococcus aureus subsp. aureus USA300_FPR3757 capsular polysaccharide biosynthesis protein Cap5E YP_492870.1 178132 D 451515 CDS YP_492871.1 87161545 3914671 179173..180282 1 NC_007793.1 identified by match to protein family HMM PF01370; match to protein family HMM PF07993; capsular polysaccharide biosynthesis protein Cap5F 180282 cap5F 3914671 cap5F Staphylococcus aureus subsp. aureus USA300_FPR3757 capsular polysaccharide biosynthesis protein Cap5F YP_492871.1 179173 D 451515 CDS YP_492872.1 87160813 3913045 180286..181410 1 NC_007793.1 identified by match to protein family HMM PF02350; match to protein family HMM TIGR00236; capsular polysaccharide biosynthesis protein Cap5G 181410 cap5G 3913045 cap5G Staphylococcus aureus subsp. aureus USA300_FPR3757 capsular polysaccharide biosynthesis protein Cap5G YP_492872.1 180286 D 451515 CDS YP_492873.1 87160063 3913287 181413..182039 1 NC_007793.1 identified by match to protein family HMM PF00132; capsular polysaccharide biosynthesis protein Cap5H 182039 cap5H 3913287 cap5H Staphylococcus aureus subsp. aureus USA300_FPR3757 capsular polysaccharide biosynthesis protein Cap5H YP_492873.1 181413 D 451515 CDS YP_492874.1 87161901 3914412 182044..183153 1 NC_007793.1 identified by match to protein family HMM PF00534; capsular polysaccharide biosynthesis protein Cap5I 183153 cap5I 3914412 cap5I Staphylococcus aureus subsp. aureus USA300_FPR3757 capsular polysaccharide biosynthesis protein Cap5I YP_492874.1 182044 D 451515 CDS YP_492875.1 87161101 3914307 183167..184333 1 NC_007793.1 identified by match to protein family HMM PF04932; capsular polysaccharide biosynthesis protein Cap5J 184333 cap5J 3914307 cap5J Staphylococcus aureus subsp. aureus USA300_FPR3757 capsular polysaccharide biosynthesis protein Cap5J YP_492875.1 183167 D 451515 CDS YP_492876.1 87160401 3912846 184326..185531 1 NC_007793.1 capsular polysaccharide biosynthesis protein Cap5K 185531 cap5K 3912846 cap5K Staphylococcus aureus subsp. aureus USA300_FPR3757 capsular polysaccharide biosynthesis protein Cap5K YP_492876.1 184326 D 451515 CDS YP_492877.1 87162167 3915198 185532..186737 1 NC_007793.1 identified by match to protein family HMM PF00534; capsular polysaccharide biosynthesis protein Cap5L 186737 cap5L 3915198 cap5L Staphylococcus aureus subsp. aureus USA300_FPR3757 capsular polysaccharide biosynthesis protein Cap5L YP_492877.1 185532 D 451515 CDS YP_492878.1 87161482 3914224 186748..187305 1 NC_007793.1 identified by match to protein family HMM PF02397; capsular polysaccharide biosynthesis protein Cap5M 187305 cap5M 3914224 cap5M Staphylococcus aureus subsp. aureus USA300_FPR3757 capsular polysaccharide biosynthesis protein Cap5M YP_492878.1 186748 D 451515 CDS YP_492879.1 87161283 3914702 187305..188192 1 NC_007793.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF07993; capsular polysaccharide biosynthesis protein Cap5N 188192 cap5N 3914702 cap5N Staphylococcus aureus subsp. aureus USA300_FPR3757 capsular polysaccharide biosynthesis protein Cap5N YP_492879.1 187305 D 451515 CDS YP_492880.1 87160646 3913970 188246..189508 1 NC_007793.1 identified by match to protein family HMM PF00984; match to protein family HMM PF03720; match to protein family HMM PF03721; capsular polysaccharide biosynthesis protein Cap5O 189508 cap5O 3913970 cap5O Staphylococcus aureus subsp. aureus USA300_FPR3757 capsular polysaccharide biosynthesis protein Cap5O YP_492880.1 188246 D 451515 CDS YP_492881.1 87160148 3913118 189555..190730 1 NC_007793.1 identified by match to protein family HMM PF02350; match to protein family HMM PF04007; match to protein family HMM TIGR00236; capsular polysaccharide biosynthesis protein Cap5P 190730 cap5P 3913118 cap5P Staphylococcus aureus subsp. aureus USA300_FPR3757 capsular polysaccharide biosynthesis protein Cap5P YP_492881.1 189555 D 451515 CDS YP_492882.1 87161977 3914489 complement(190795..191121) 1 NC_007793.1 iron regulated; catalyzes the release of heme from hemoglobin allowing bacterial pathogens to use the host heme as an iron source; heme-degrading monooxygenase IsdI 191121 3914489 SAUSA300_0168 Staphylococcus aureus subsp. aureus USA300_FPR3757 heme-degrading monooxygenase IsdI YP_492882.1 190795 R 451515 CDS YP_492883.1 87162249 3914874 complement(191128..191511) 1 NC_007793.1 identified by match to protein family HMM PF04304; hypothetical protein 191511 3914874 SAUSA300_0169 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_492883.1 191128 R 451515 CDS YP_492884.1 87161510 3913223 191938..193425 1 NC_007793.1 identified by match to protein family HMM PF00171; aldehyde dehydrogenase 193425 3913223 SAUSA300_0170 Staphylococcus aureus subsp. aureus USA300_FPR3757 aldehyde dehydrogenase YP_492884.1 191938 D 451515 CDS YP_492885.1 87161093 3914299 194071..195030 1 NC_007793.1 identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297; cation efflux family protein 195030 3914299 SAUSA300_0171 Staphylococcus aureus subsp. aureus USA300_FPR3757 cation efflux family protein YP_492885.1 194071 D 451515 CDS YP_492886.1 87160421 3913139 complement(195092..195295) 1 NC_007793.1 hypothetical protein 195295 3913139 SAUSA300_0172 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_492886.1 195092 R 451515 CDS YP_492887.1 87161917 3913008 195474..195986 1 NC_007793.1 hypothetical protein 195986 3913008 SAUSA300_0173 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_492887.1 195474 D 451515 CDS YP_492888.1 87161233 3914787 196328..197068 1 NC_007793.1 identified by match to protein family HMM PF00005; hypothetical protein 197068 3914787 SAUSA300_0174 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_492888.1 196328 D 451515 CDS YP_492889.1 87161872 3914560 197082..198056 1 NC_007793.1 putative lipoprotein 198056 3914560 SAUSA300_0175 Staphylococcus aureus subsp. aureus USA300_FPR3757 putative lipoprotein YP_492889.1 197082 D 451515 CDS YP_492890.1 87161514 3913227 198053..198814 1 NC_007793.1 identified by match to protein family HMM PF00528; ABC transporter permease 198814 3913227 SAUSA300_0176 Staphylococcus aureus subsp. aureus USA300_FPR3757 ABC transporter permease YP_492890.1 198053 D 451515 CDS YP_492891.1 87160803 3913035 198827..199858 1 NC_007793.1 hypothetical protein 199858 3913035 SAUSA300_0177 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_492891.1 198827 D 451515 CDS YP_492892.1 87160665 3915042 200075..200434 1 NC_007793.1 hypothetical protein 200434 3915042 SAUSA300_0178 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_492892.1 200075 D 451515 CDS YP_492893.1 87160024 3913345 200607..201632 1 NC_007793.1 Catalyzes the reversible two-electron oxidation of formate to carbon dioxide. It allows the assimilation of carbon dioxide and provides energy for growth through oxidative phosphorylation coupled to the reduction of oxygen, nitrate, sulphate or fumarate; formate dehydrogenase 201632 3913345 SAUSA300_0179 Staphylococcus aureus subsp. aureus USA300_FPR3757 formate dehydrogenase YP_492893.1 200607 D 451515 CDS YP_492894.1 87162091 3914634 202018..203268 1 NC_007793.1 identified by match to protein family HMM PF07690; integral membrane protein LmrP 203268 3914634 SAUSA300_0180 Staphylococcus aureus subsp. aureus USA300_FPR3757 integral membrane protein LmrP YP_492894.1 202018 D 451515 CDS YP_492895.1 87161363 3914762 203715..210890 1 NC_007793.1 identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01733; match to protein family HMM TIGR01746; non-ribosomal peptide synthetase 210890 3914762 SAUSA300_0181 Staphylococcus aureus subsp. aureus USA300_FPR3757 non-ribosomal peptide synthetase YP_492895.1 203715 D 451515 CDS YP_492896.1 87160928 3914366 210903..211547 1 NC_007793.1 identified by match to protein family HMM PF01648; 4'-phosphopantetheinyl transferase superfamily protein 211547 3914366 SAUSA300_0182 Staphylococcus aureus subsp. aureus USA300_FPR3757 4'-phosphopantetheinyl transferase superfamily protein YP_492896.1 210903 D 451515 CDS YP_492897.1 87160257 3913659 complement(211875..212369) 1 NC_007793.1 identified by match to protein family HMM PF07274; hypothetical protein 212369 3913659 SAUSA300_0183 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_492897.1 211875 R 451515 CDS YP_492898.1 87162444 3915040 complement(212624..213388) 1 NC_007793.1 identified by match to protein family HMM PF00696; match to protein family HMM TIGR00761; acetylglutamate kinase 213388 argB 3915040 argB Staphylococcus aureus subsp. aureus USA300_FPR3757 acetylglutamate kinase YP_492898.1 212624 R 451515 CDS YP_492899.1 87161926 3914586 complement(213404..214645) 1 NC_007793.1 bifunctional arginine biosynthesis protein ArgJ; functions at the 1st and 5th steps in arginine biosynthesis; involved in synthesis of acetylglutamate from glutamate and acetyl-CoA and ornithine by transacetylation between acetylornithine and glutmate; bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein 214645 argJ 3914586 argJ Staphylococcus aureus subsp. aureus USA300_FPR3757 bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein YP_492899.1 213404 R 451515 CDS YP_492900.1 87161009 3913575 complement(214657..215688) 1 NC_007793.1 catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate; N-acetyl-gamma-glutamyl-phosphate reductase 215688 argC 3913575 argC Staphylococcus aureus subsp. aureus USA300_FPR3757 N-acetyl-gamma-glutamyl-phosphate reductase YP_492900.1 214657 R 451515 CDS YP_492901.1 87160787 3914607 complement(215727..216911) 1 NC_007793.1 identified by match to protein family HMM PF00202; match to protein family HMM TIGR01885; ornithine aminotransferase 216911 rocD 3914607 rocD Staphylococcus aureus subsp. aureus USA300_FPR3757 ornithine aminotransferase YP_492901.1 215727 R 451515 CDS YP_492902.1 87160830 3913551 complement(217164..218519) 1 NC_007793.1 identified by match to protein family HMM PF05525; match to protein family HMM TIGR00796; branched-chain amino acid transport system II carrier protein 218519 brnQ 3913551 brnQ Staphylococcus aureus subsp. aureus USA300_FPR3757 branched-chain amino acid transport system II carrier protein YP_492902.1 217164 R 451515 CDS YP_492903.1 87161201 3914912 complement(218795..219292) 1 NC_007793.1 identified by match to protein family HMM PF00857; isochorismatase 219292 entB 3914912 entB Staphylococcus aureus subsp. aureus USA300_FPR3757 isochorismatase YP_492903.1 218795 R 451515 CDS YP_492904.1 87160234 3913772 complement(219419..221059) 1 NC_007793.1 identified by match to protein family HMM PF00205; match to protein family HMM PF02775; match to protein family HMM PF02776; indole-3-pyruvate decarboxylase 221059 ipdC 3913772 ipdC Staphylococcus aureus subsp. aureus USA300_FPR3757 indole-3-pyruvate decarboxylase YP_492904.1 219419 R 451515 CDS YP_492905.1 87160101 3914934 complement(221333..223378) 1 NC_007793.1 identified by match to protein family HMM PF00358; match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR00830; match to protein family HMM TIGR02002; PTS system glucose-specific IIBC subunit 223378 ptsG 3914934 ptsG Staphylococcus aureus subsp. aureus USA300_FPR3757 PTS system glucose-specific IIBC subunit YP_492905.1 221333 R 451515 CDS YP_492906.1 87161709 3915275 223964..225019 1 NC_007793.1 identified by match to protein family HMM PF05913; hypothetical protein 225019 3915275 SAUSA300_0192 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_492906.1 223964 D 451515 CDS YP_492907.1 87162426 3915022 225019..225915 1 NC_007793.1 catalyzes the cleavage of the lactyl ether moiety of N-acetylmuramic acid-6-phosphate (MurNAc-6-P) to form N-acetylglucosamine-6-phosphate (GlcNAc-6-P) and lactate; involved in MurNAc dissimilation pathway; N-acetylmuramic acid-6-phosphate etherase 225915 murQ 3915022 murQ Staphylococcus aureus subsp. aureus USA300_FPR3757 N-acetylmuramic acid-6-phosphate etherase YP_492907.1 225019 D 451515 CDS YP_492908.1 87159952 3913839 225927..227381 1 NC_007793.1 identified by match to protein family HMM PF00367; match to protein family HMM PF02378; sucrose-specific PTS transporter protein 227381 3913839 SAUSA300_0194 Staphylococcus aureus subsp. aureus USA300_FPR3757 sucrose-specific PTS transporter protein YP_492908.1 225927 D 451515 CDS YP_492909.1 87160090 3914923 227384..228259 1 NC_007793.1 identified by match to protein family HMM PF01380; match to protein family HMM PF01418; transcriptional regulator 228259 3914923 SAUSA300_0195 Staphylococcus aureus subsp. aureus USA300_FPR3757 transcriptional regulator YP_492909.1 227384 D 451515 CDS YP_492910.1 87162263 3913181 228947..231736 1 NC_007793.1 identified by match to protein family HMM PF00270; match to protein family HMM PF04313; match to protein family HMM PF04851; match to protein family HMM TIGR00348; type I restriction-modification enzyme, R subunit 231736 hsdR 3913181 hsdR Staphylococcus aureus subsp. aureus USA300_FPR3757 type I restriction-modification enzyme, R subunit YP_492910.1 228947 D 451515 CDS YP_492911.1 87161542 3914668 231941..232783 1 NC_007793.1 hypothetical protein 232783 3914668 SAUSA300_0197 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_492911.1 231941 D 451515 CDS YP_492912.1 87161034 3912879 232785..233708 1 NC_007793.1 hypothetical protein 233708 3912879 SAUSA300_0198 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_492912.1 232785 D 451515 CDS YP_492913.1 87160370 3913244 233695..234807 1 NC_007793.1 hypothetical protein 234807 3913244 SAUSA300_0199 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_492913.1 233695 D 451515 CDS YP_492914.1 87161253 3913862 complement(235072..236664) 1 NC_007793.1 identified by match to protein family HMM PF00005; peptide ABC transporter ATP-binding protein 236664 3913862 SAUSA300_0200 Staphylococcus aureus subsp. aureus USA300_FPR3757 peptide ABC transporter ATP-binding protein YP_492914.1 235072 R 451515 CDS YP_492915.1 87160534 3914014 236621..238099 1 NC_007793.1 identified by match to protein family HMM PF00528; peptide ABC transporter permease 238099 3914014 SAUSA300_0201 Staphylococcus aureus subsp. aureus USA300_FPR3757 peptide ABC transporter permease YP_492915.1 236621 D 451515 CDS YP_492916.1 87160152 3913122 238105..239268 1 NC_007793.1 identified by match to protein family HMM PF00528; peptide ABC transporter permease 239268 3913122 SAUSA300_0202 Staphylococcus aureus subsp. aureus USA300_FPR3757 peptide ABC transporter permease YP_492916.1 238105 D 451515 CDS YP_492917.1 87162264 3913182 239285..241060 1 NC_007793.1 RGD-containing lipoprotein 241060 3913182 SAUSA300_0203 Staphylococcus aureus subsp. aureus USA300_FPR3757 RGD-containing lipoprotein YP_492917.1 239285 D 451515 CDS YP_492918.1 87161550 3914678 241098..243104 1 NC_007793.1 identified by match to protein family HMM PF01019; match to protein family HMM TIGR00066; gamma-glutamyltranspeptidase 243104 ggt 3914678 ggt Staphylococcus aureus subsp. aureus USA300_FPR3757 gamma-glutamyltranspeptidase YP_492918.1 241098 D 451515 CDS YP_492919.1 87161293 3914712 complement(243402..244175) 1 NC_007793.1 identified by match to protein family HMM PF04507; match to protein family HMM TIGR01742; tandem lipoprotein 244175 3914712 SAUSA300_0205 Staphylococcus aureus subsp. aureus USA300_FPR3757 tandem lipoprotein YP_492919.1 243402 R 451515 CDS YP_492920.1 87160840 3913386 complement(244365..244991) 1 NC_007793.1 FMN-dependent; requires NADH; catalyzes the cleavage of azo bond in aromatic azo compounds; azoreductase 244991 3913386 SAUSA300_0206 Staphylococcus aureus subsp. aureus USA300_FPR3757 azoreductase YP_492920.1 244365 R 451515 CDS YP_492921.1 87161219 3912794 245200..245778 1 NC_007793.1 identified by match to protein family HMM PF01551; hypothetical protein 245778 3912794 SAUSA300_0207 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_492921.1 245200 D 451515 CDS YP_492922.1 87162246 3914871 246161..247258 1 NC_007793.1 identified by match to protein family HMM PF00005; match to protein family HMM PF03459; putative maltose ABC transporter ATP-binding protein 247258 3914871 SAUSA300_0208 Staphylococcus aureus subsp. aureus USA300_FPR3757 putative maltose ABC transporter ATP-binding protein YP_492922.1 246161 D 451515 CDS YP_492923.1 87160267 3913669 247271..248542 1 NC_007793.1 identified by match to protein family HMM PF01547; putative maltose ABC transporter maltose-binding protein 248542 3913669 SAUSA300_0209 Staphylococcus aureus subsp. aureus USA300_FPR3757 putative maltose ABC transporter maltose-binding protein YP_492923.1 247271 D 451515 CDS YP_492924.1 87161088 3914275 248545..249813 1 NC_007793.1 identified by match to protein family HMM PF00528; match to protein family HMM PF05154; maltose ABC transporter permease 249813 3914275 SAUSA300_0210 Staphylococcus aureus subsp. aureus USA300_FPR3757 maltose ABC transporter permease YP_492924.1 248545 D 451515 CDS YP_492925.1 87161668 3914433 249815..250654 1 NC_007793.1 identified by match to protein family HMM PF00528; maltose ABC transporter permease 250654 3914433 SAUSA300_0211 Staphylococcus aureus subsp. aureus USA300_FPR3757 maltose ABC transporter permease YP_492925.1 249815 D 451515 CDS YP_492926.1 87159977 3914829 250728..251804 1 NC_007793.1 identified by match to protein family HMM PF01408; match to protein family HMM PF02894; Gfo/Idh/MocA family oxidoreductase 251804 3914829 SAUSA300_0212 Staphylococcus aureus subsp. aureus USA300_FPR3757 Gfo/Idh/MocA family oxidoreductase YP_492926.1 250728 D 451515 CDS YP_492927.1 87160524 3914736 251829..252869 1 NC_007793.1 identified by match to protein family HMM PF01408; match to protein family HMM PF02894; Gfo/Idh/MocA family oxidoreductase 252869 3914736 SAUSA300_0213 Staphylococcus aureus subsp. aureus USA300_FPR3757 Gfo/Idh/MocA family oxidoreductase YP_492927.1 251829 D 451515 CDS YP_492928.1 87159981 3914833 252924..253892 1 NC_007793.1 identified by match to protein family HMM PF01261; match to protein family HMM PF07582; hypothetical protein 253892 3914833 SAUSA300_0214 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_492928.1 252924 D 451515 CDS YP_492929.1 87160773 3913748 complement(254254..254826) 1 NC_007793.1 identified by match to protein family HMM PF04140; hypothetical protein 254826 3913748 SAUSA300_0215 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_492929.1 254254 R 451515 CDS YP_492930.1 87161354 3912871 254981..256360 1 NC_007793.1 cytoplasmic membrane protein that functions as a monomer; catalyzes the active transport of sugar-phosphates such as glucose-6-phosphate with the obligatory exchange of inorganic phosphate or organophosphate; sugar phosphate antiporter 256360 uhpT 3912871 uhpT Staphylococcus aureus subsp. aureus USA300_FPR3757 sugar phosphate antiporter YP_492930.1 254981 D 451515 CDS YP_492931.1 87161960 3914472 complement(256719..257477) 1 NC_007793.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00165; AraC family DNA-binding response regulator 257477 3914472 SAUSA300_0217 Staphylococcus aureus subsp. aureus USA300_FPR3757 AraC family DNA-binding response regulator YP_492931.1 256719 R 451515 CDS YP_492932.1 87160659 3913983 complement(257470..259026) 1 NC_007793.1 identified by match to protein family HMM PF06580; sensor histidine kinase family protein 259026 3913983 SAUSA300_0218 Staphylococcus aureus subsp. aureus USA300_FPR3757 sensor histidine kinase family protein YP_492932.1 257470 R 451515 CDS YP_492933.1 87161389 3914159 complement(259023..259991) 1 NC_007793.1 identified by similarity to GB:AAW37499.1; putative iron compound A C transporter, iron compound-binding protein 259991 3914159 SAUSA300_0219 Staphylococcus aureus subsp. aureus USA300_FPR3757 putative iron compound A C transporter, iron compound-binding protein YP_492933.1 259023 R 451515 CDS YP_492934.1 87162120 3913584 260579..262828 1 NC_007793.1 identified by match to protein family HMM PF01228; match to protein family HMM PF02901; match to protein family HMM TIGR01255; formate acetyltransferase 262828 pflB 3913584 pflB Staphylococcus aureus subsp. aureus USA300_FPR3757 formate acetyltransferase YP_492934.1 260579 D 451515 CDS YP_492935.1 87160885 3912962 262851..263606 1 NC_007793.1 identified by match to protein family HMM PF04055; match to protein family HMM TIGR02493; pyruvate formate-lyase activating enzyme 263606 pflA 3912962 pflA Staphylococcus aureus subsp. aureus USA300_FPR3757 pyruvate formate-lyase activating enzyme YP_492935.1 262851 D 451515 CDS YP_492936.1 87160228 3913766 263942..265705 1 NC_007793.1 identified by match to protein family HMM PF03009; hypothetical protein 265705 3913766 SAUSA300_0222 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_492936.1 263942 D 451515 CDS YP_492937.1 87160995 3913561 complement(265869..266213) 1 NC_007793.1 hypothetical protein 266213 3913561 SAUSA300_0223 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_492937.1 265869 R 451515 CDS YP_492938.1 87161733 3913019 266403..268232 1 NC_007793.1 staphylocoagulase 268232 coa 3913019 coa Staphylococcus aureus subsp. aureus USA300_FPR3757 staphylocoagulase YP_492938.1 266403 D 451515 CDS YP_492939.1 87162421 3915268 complement(268835..270019) 1 NC_007793.1 identified by match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930; putative acyl-CoA acetyltransferase FadA 270019 3915268 SAUSA300_0225 Staphylococcus aureus subsp. aureus USA300_FPR3757 putative acyl-CoA acetyltransferase FadA YP_492939.1 268835 R 451515 CDS YP_492940.1 87160523 3914735 complement(270049..272310) 1 NC_007793.1 identified by match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF02737; 3-hydroxyacyl-CoA dehydrogenase 272310 3914735 SAUSA300_0226 Staphylococcus aureus subsp. aureus USA300_FPR3757 3-hydroxyacyl-CoA dehydrogenase YP_492940.1 270049 R 451515 CDS YP_492941.1 87161145 3913734 complement(272496..273707) 1 NC_007793.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028; acyl-CoA dehydrogenase FadD 273707 fadD 3913734 fadD Staphylococcus aureus subsp. aureus USA300_FPR3757 acyl-CoA dehydrogenase FadD YP_492941.1 272496 R 451515 CDS YP_492942.1 87162097 3913091 complement(273819..275324) 1 NC_007793.1 identified by match to protein family HMM PF00501; acyl-CoA synthetase FadE 275324 fadE 3913091 fadE Staphylococcus aureus subsp. aureus USA300_FPR3757 acyl-CoA synthetase FadE YP_492942.1 273819 R 451515 CDS YP_492943.1 87161270 3915241 complement(275350..276927) 1 NC_007793.1 putative acyl-CoA transferase FadX 276927 3915241 SAUSA300_0229 Staphylococcus aureus subsp. aureus USA300_FPR3757 putative acyl-CoA transferase FadX YP_492943.1 275350 R 451515 CDS YP_492944.1 87162099 3913093 277368..278510 1 NC_007793.1 hypothetical protein 278510 3913093 SAUSA300_0230 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_492944.1 277368 D 451515 CDS YP_492945.1 87161352 3912869 complement(278824..280299) 1 NC_007793.1 identified by match to protein family HMM PF00496; ABC transporter substrate-binding protein 280299 3912869 SAUSA300_0231 Staphylococcus aureus subsp. aureus USA300_FPR3757 ABC transporter substrate-binding protein YP_492945.1 278824 R 451515 CDS YP_492946.1 87160972 3915367 complement(280497..280853) 1 NC_007793.1 identified by match to protein family HMM PF04343; hypothetical protein 280853 3915367 SAUSA300_0232 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_492946.1 280497 R 451515 CDS YP_492947.1 87160281 3913488 complement(281010..281183) 1 NC_007793.1 hypothetical protein 281183 3913488 SAUSA300_0233 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_492947.1 281010 R 451515 CDS YP_492948.1 87162433 3915029 complement(281209..282354) 1 NC_007793.1 identified by match to protein family HMM PF00042; match to protein family HMM PF00175; match to protein family HMM PF00970; putative flavohemoprotein 282354 3915029 SAUSA300_0234 Staphylococcus aureus subsp. aureus USA300_FPR3757 putative flavohemoprotein YP_492948.1 281209 R 451515 CDS YP_492949.1 87161566 3915181 283071..283880 1 NC_007793.1 identified by match to protein family HMM PF00056; match to protein family HMM PF02866; match to protein family HMM TIGR01771; L-lactate dehydrogenase 283880 3915181 SAUSA300_0235 Staphylococcus aureus subsp. aureus USA300_FPR3757 L-lactate dehydrogenase YP_492949.1 283071 D 451515 CDS YP_492950.1 87161117 3914343 complement(284200..285729) 1 NC_007793.1 identified by match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; PTS system, IIBC components 285729 3914343 SAUSA300_0236 Staphylococcus aureus subsp. aureus USA300_FPR3757 PTS system, IIBC components YP_492950.1 284200 R 451515 CDS YP_492951.1 87160218 3913756 286091..287026 1 NC_007793.1 identified by match to protein family HMM PF01156; inosine-uridine preferring nucleoside hydrolase 287026 3913756 SAUSA300_0237 Staphylococcus aureus subsp. aureus USA300_FPR3757 inosine-uridine preferring nucleoside hydrolase YP_492951.1 286091 D 451515 CDS YP_492952.1 87160578 3915004 287365..289461 1 NC_007793.1 identified by match to protein family HMM PF00359; match to protein family HMM PF00874; match to protein family HMM PF05043; BglG family transcriptional antiterminator 289461 3915004 SAUSA300_0238 Staphylococcus aureus subsp. aureus USA300_FPR3757 BglG family transcriptional antiterminator YP_492952.1 287365 D 451515 CDS YP_492953.1 87160040 3913361 289446..289913 1 NC_007793.1 identified by match to protein family HMM PF00359; PTS system, fructose-specific enzyme II, BC component 289913 3913361 SAUSA300_0239 Staphylococcus aureus subsp. aureus USA300_FPR3757 PTS system, fructose-specific enzyme II, BC component YP_492953.1 289446 D 451515 CDS YP_492954.1 87162056 3914332 289936..290214 1 NC_007793.1 identified by match to protein family HMM PF02302; PTS system, galactitol-specific enzyme II, B component 290214 3914332 SAUSA300_0240 Staphylococcus aureus subsp. aureus USA300_FPR3757 PTS system, galactitol-specific enzyme II, B component YP_492954.1 289936 D 451515 CDS YP_492955.1 87161432 3914081 290441..291700 1 NC_007793.1 identified by match to protein family HMM PF03611; match to protein family HMM TIGR00827; PTS system, sorbitol-specific IIC component 291700 3914081 SAUSA300_0241 Staphylococcus aureus subsp. aureus USA300_FPR3757 PTS system, sorbitol-specific IIC component YP_492955.1 290441 D 451515 CDS YP_492956.1 87160313 3914549 291718..292773 1 NC_007793.1 identified by match to protein family HMM PF00107; sorbitol dehydrogenase 292773 gutB 3914549 gutB Staphylococcus aureus subsp. aureus USA300_FPR3757 sorbitol dehydrogenase YP_492956.1 291718 D 451515 CDS YP_492957.1 87162000 3915371 292775..292921 1 NC_007793.1 hypothetical protein 292921 3915371 SAUSA300_0243 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_492957.1 292775 D 451515 CDS YP_492958.1 87161765 3913619 292945..293988 1 NC_007793.1 identified by match to protein family HMM PF00107; zinc-binding dehydrogenase family oxidoreductase 293988 3913619 SAUSA300_0244 Staphylococcus aureus subsp. aureus USA300_FPR3757 zinc-binding dehydrogenase family oxidoreductase YP_492958.1 292945 D 451515 CDS YP_492959.1 87161268 3915239 294558..295232 1 NC_007793.1 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT; catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; forms homodimers; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 295232 3915239 SAUSA300_0245 Staphylococcus aureus subsp. aureus USA300_FPR3757 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase YP_492959.1 294558 D 451515 CDS YP_492960.1 87161230 3914784 295225..296250 1 NC_007793.1 putative alcohol dehydrogenase 296250 3914784 SAUSA300_0246 Staphylococcus aureus subsp. aureus USA300_FPR3757 putative alcohol dehydrogenase YP_492960.1 295225 D 451515 CDS YP_492961.1 87161837 3913808 296272..297966 1 NC_007793.1 identified by match to protein family HMM PF04464; putative teichoic acid biosynthesis protein B 297966 3913808 SAUSA300_0247 Staphylococcus aureus subsp. aureus USA300_FPR3757 putative teichoic acid biosynthesis protein B YP_492961.1 296272 D 451515 CDS YP_492962.1 87162248 3914873 298394..299563 1 NC_007793.1 identified by match to protein family HMM PF04464; putative teichoic acid biosynthesis protein F 299563 3914873 SAUSA300_0248 Staphylococcus aureus subsp. aureus USA300_FPR3757 putative teichoic acid biosynthesis protein F YP_492962.1 298394 D 451515 CDS YP_492963.1 87160847 3913393 299839..300555 1 NC_007793.1 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT; catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; forms homodimers; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 300555 ispD 3913393 ispD Staphylococcus aureus subsp. aureus USA300_FPR3757 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase YP_492963.1 299839 D 451515 CDS YP_492964.1 87161536 3914662 300548..301573 1 NC_007793.1 alcohol dehydrogenase, zinc-containing 301573 3914662 SAUSA300_0250 Staphylococcus aureus subsp. aureus USA300_FPR3757 alcohol dehydrogenase, zinc-containing YP_492964.1 300548 D 451515 CDS YP_492965.1 87162225 3914000 301595..303283 1 NC_007793.1 identified by match to protein family HMM PF04464; putative teichoic acid biosynthesis protein 303283 3914000 SAUSA300_0251 Staphylococcus aureus subsp. aureus USA300_FPR3757 putative teichoic acid biosynthesis protein YP_492965.1 301595 D 451515 CDS YP_492966.1 87160407 3912852 303316..305040 1 NC_007793.1 identified by match to protein family HMM PF00535; glycosyl transferase, group 2 family protein 305040 3912852 SAUSA300_0252 Staphylococcus aureus subsp. aureus USA300_FPR3757 glycosyl transferase, group 2 family protein YP_492966.1 303316 D 451515 CDS YP_492967.1 87160630 3915065 305180..305854 1 NC_007793.1 involved in peptidoglycan cross-linking; cell wall biosynthesis protein ScdA 305854 scdA 3915065 scdA Staphylococcus aureus subsp. aureus USA300_FPR3757 cell wall biosynthesis protein ScdA YP_492967.1 305180 D 451515 CDS YP_492968.1 87160778 3913753 306116..307855 1 NC_007793.1 identified by match to protein family HMM PF02518; match to protein family HMM PF06580; match to protein family HMM PF07694; sensor histidine kinase 307855 3913753 SAUSA300_0254 Staphylococcus aureus subsp. aureus USA300_FPR3757 sensor histidine kinase YP_492968.1 306116 D 451515 CDS YP_492969.1 87161867 3914555 307858..308598 1 NC_007793.1 identified by match to protein family HMM PF00072; match to protein family HMM PF04397; two-component response regulator 308598 3914555 SAUSA300_0255 Staphylococcus aureus subsp. aureus USA300_FPR3757 two-component response regulator YP_492969.1 307858 D 451515 CDS YP_492970.1 87161669 3914434 308711..309154 1 NC_007793.1 negatively regulates murein hydrolase activity; murein hydrolase regulator LrgA 309154 3914434 SAUSA300_0256 Staphylococcus aureus subsp. aureus USA300_FPR3757 murein hydrolase regulator LrgA YP_492970.1 308711 D 451515 CDS YP_492971.1 87160946 3913786 309147..309848 1 NC_007793.1 in conjunction with LrgA this protein inhibits the expression or activity of extracellular murein hydrolases; antiholin-like protein LrgB 309848 3913786 SAUSA300_0257 Staphylococcus aureus subsp. aureus USA300_FPR3757 antiholin-like protein LrgB YP_492971.1 309147 D 451515 CDS YP_492972.1 87160981 3913313 complement(309956..310660) 1 NC_007793.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07702; GntR family transcriptional regulator 310660 3913313 SAUSA300_0258 Staphylococcus aureus subsp. aureus USA300_FPR3757 GntR family transcriptional regulator YP_492972.1 309956 R 451515 CDS YP_492973.1 87160259 3913661 310809..311600 1 NC_007793.1 identified by match to protein family HMM PF00358; match to protein family HMM TIGR00830; PTS system, IIA component 311600 3913661 SAUSA300_0259 Staphylococcus aureus subsp. aureus USA300_FPR3757 PTS system, IIA component YP_492973.1 310809 D 451515 CDS YP_492974.1 87161499 3913212 311616..313052 1 NC_007793.1 identified by match to protein family HMM PF00232; 6-phospho-beta-glucosidase 313052 bglA 3913212 bglA Staphylococcus aureus subsp. aureus USA300_FPR3757 6-phospho-beta-glucosidase YP_492974.1 311616 D 451515 CDS YP_492975.1 87160684 3914178 complement(313486..314247) 1 NC_007793.1 identified by match to protein family HMM PF01209; hypothetical protein 314247 3914178 SAUSA300_0261 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_492975.1 313486 R 451515 CDS YP_492976.1 87161905 3912996 complement(314498..315412) 1 NC_007793.1 identified by match to protein family HMM PF00294; match to protein family HMM TIGR02152; ribokinase 315412 rbsK 3912996 rbsK Staphylococcus aureus subsp. aureus USA300_FPR3757 ribokinase YP_492976.1 314498 R 451515 CDS YP_492977.1 87161287 3914706 complement(315440..315844) 1 NC_007793.1 cytoplasmic mutarotase that catalyzes the conversion between beta-pyran and beta-furan forms of D-ribose; RbsD is required for efficient ribose utilization in E. coli; rbsD-mutant E. coli strains are unable to use ribose as a sole carbon source; D-ribose pyranase 315844 rbsD 3914706 rbsD Staphylococcus aureus subsp. aureus USA300_FPR3757 D-ribose pyranase YP_492977.1 315440 R 451515 CDS YP_492978.1 87160729 3913430 complement(315859..316740) 1 NC_007793.1 identified by match to protein family HMM PF06800; ribose transporter RbsU 316740 3913430 SAUSA300_0264 Staphylococcus aureus subsp. aureus USA300_FPR3757 ribose transporter RbsU YP_492978.1 315859 R 451515 CDS YP_492979.1 87160779 3913754 complement(316972..317970) 1 NC_007793.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532; putative ribose operon repressor 317970 3913754 SAUSA300_0265 Staphylococcus aureus subsp. aureus USA300_FPR3757 putative ribose operon repressor YP_492979.1 316972 R 451515 CDS YP_492980.1 87162133 3913597 318350..318742 1 NC_007793.1 hypothetical protein 318742 3913597 SAUSA300_0266 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_492980.1 318350 D 451515 CDS YP_492981.1 87160305 3914541 318970..319374 1 NC_007793.1 transposase 319374 3914541 SAUSA300_0267 Staphylococcus aureus subsp. aureus USA300_FPR3757 transposase YP_492981.1 318970 D 451515 CDS YP_492982.1 87161063 3912773 complement(319415..320791) 1 NC_007793.1 identified by match to protein family HMM PF07690; putative drug transporter 320791 3912773 SAUSA300_0268 Staphylococcus aureus subsp. aureus USA300_FPR3757 putative drug transporter YP_492982.1 319415 R 451515 CDS YP_492983.1 87161761 3913906 321025..322017 1 NC_007793.1 identified by match to protein family HMM PF02275; choloylglycine hydrolase family protein 322017 3913906 SAUSA300_0269 Staphylococcus aureus subsp. aureus USA300_FPR3757 choloylglycine hydrolase family protein YP_492983.1 321025 D 451515 CDS YP_492984.1 87160448 3912951 322343..323293 1 NC_007793.1 identified by match to protein family HMM PF01551; peptidoglycan hydrolase 323293 lytM 3912951 lytM Staphylococcus aureus subsp. aureus USA300_FPR3757 peptidoglycan hydrolase YP_492984.1 322343 D 451515 CDS YP_492985.1 87161084 3914270 complement(323345..324004) 1 NC_007793.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 324004 3914270 SAUSA300_0271 Staphylococcus aureus subsp. aureus USA300_FPR3757 ABC transporter ATP-binding protein YP_492985.1 323345 R 451515 CDS YP_492986.1 87160718 3912833 complement(324018..324938) 1 NC_007793.1 hypothetical protein 324938 3912833 SAUSA300_0272 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_492986.1 324018 R 451515 CDS YP_492987.1 87161202 3914913 complement(324935..326101) 1 NC_007793.1 hypothetical protein 326101 3914913 SAUSA300_0273 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_492987.1 324935 R 451515 CDS YP_492988.1 87160126 3912979 complement(326169..327692) 1 NC_007793.1 hypothetical protein 327692 3912979 SAUSA300_0274 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_492988.1 326169 R 451515 CDS YP_492989.1 87161065 3912775 327963..328616 1 NC_007793.1 hypothetical protein 328616 3912775 SAUSA300_0275 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_492989.1 327963 D 451515 CDS YP_492990.1 87160689 3914183 328650..329237 1 NC_007793.1 hypothetical protein 329237 3914183 SAUSA300_0276 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_492990.1 328650 D 451515 CDS YP_492991.1 87160169 3914521 complement(329380..330273) 1 NC_007793.1 identified by match to protein family HMM PF05257; putative staphyloxanthin biosynthesis protein 330273 3914521 SAUSA300_0277 Staphylococcus aureus subsp. aureus USA300_FPR3757 putative staphyloxanthin biosynthesis protein YP_492991.1 329380 R 451515 CDS YP_492992.1 87161298 3914717 330521..330814 1 NC_007793.1 identified by match to protein family HMM PF06013; hypothetical protein 330814 3914717 SAUSA300_0278 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_492992.1 330521 D 451515 CDS YP_492993.1 87160703 3914197 330898..333927 1 NC_007793.1 hypothetical protein 333927 3914197 SAUSA300_0279 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_492993.1 330898 D 451515 CDS YP_492994.1 87160178 3914530 333927..334385 1 NC_007793.1 hypothetical protein 334385 3914530 SAUSA300_0280 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_492994.1 333927 D 451515 CDS YP_492995.1 87162048 3914324 334357..334599 1 NC_007793.1 hypothetical protein 334599 3914324 SAUSA300_0281 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_492995.1 334357 D 451515 CDS YP_492996.1 87160905 3915156 334612..335946 1 NC_007793.1 hypothetical protein 335946 3915156 SAUSA300_0282 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_492996.1 334612 D 451515 CDS YP_492997.1 87160320 3915395 335968..340407 1 NC_007793.1 identified by similarity to SP:P0C048; match to protein family HMM PF01580; essC protein 340407 3915395 SAUSA300_0283 Staphylococcus aureus subsp. aureus USA300_FPR3757 essC protein YP_492997.1 335968 D 451515 CDS YP_492998.1 87162335 3913819 340437..340829 1 NC_007793.1 hypothetical protein 340829 3913819 SAUSA300_0284 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_492998.1 340437 D 451515 CDS YP_492999.1 87161345 3912862 340845..341159 1 NC_007793.1 hypothetical protein 341159 3912862 SAUSA300_0285 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_492999.1 340845 D 451515 CDS YP_493000.1 87160631 3915066 341159..341833 1 NC_007793.1 hypothetical protein 341833 3915066 SAUSA300_0286 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493000.1 341159 D 451515 CDS YP_493001.1 87159921 3914967 341833..342150 1 NC_007793.1 hypothetical protein 342150 3914967 SAUSA300_0287 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493001.1 341833 D 451515 CDS YP_493002.1 87162196 3914839 342160..344004 1 NC_007793.1 hypothetical protein 344004 3914839 SAUSA300_0288 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493002.1 342160 D 451515 CDS YP_493003.1 87161334 3915305 344015..344506 1 NC_007793.1 identified by match to protein family HMM PF04634; match to protein family HMM TIGR01741; hypothetical protein 344506 3915305 SAUSA300_0289 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493003.1 344015 D 451515 CDS YP_493004.1 87161073 3914259 344714..345397 1 NC_007793.1 putative lipoprotein 345397 3914259 SAUSA300_0290 Staphylococcus aureus subsp. aureus USA300_FPR3757 putative lipoprotein YP_493004.1 344714 D 451515 CDS YP_493005.1 87160230 3913768 345544..346155 1 NC_007793.1 hypothetical protein 346155 3913768 SAUSA300_0291 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493005.1 345544 D 451515 CDS YP_493006.1 87161234 3914788 346291..346509 1 NC_007793.1 hypothetical protein 346509 3914788 SAUSA300_0292 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493006.1 346291 D 451515 CDS YP_493007.1 87161699 3914464 346641..347141 1 NC_007793.1 identified by match to protein family HMM PF04634; match to protein family HMM TIGR01741; hypothetical protein 347141 3914464 SAUSA300_0293 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493007.1 346641 D 451515 CDS YP_493008.2 229558722 3914924 347152..347652 1 NC_007793.1 identified by match to protein family HMM PF04634; match to protein family HMM TIGR01741; hypothetical protein 347652 3914924 SAUSA300_0294 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493008.2 347152 D 451515 CDS YP_493009.1 87162190 3913887 347772..348158 1 NC_007793.1 authenticated frameshift, not result of sequencing error; same frameshift also found in COL; identified by match to protein family HMM PF04634; match to protein family HMM TIGR01741; hypothetical protein 348158 3913887 SAUSA300_0295 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493009.1 347772 D 451515 CDS YP_493010.1 87160898 3915149 348169..348660 1 NC_007793.1 identified by match to protein family HMM PF04634; match to protein family HMM TIGR01741; hypothetical protein 348660 3915149 SAUSA300_0296 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493010.1 348169 D 451515 CDS YP_493011.1 87161424 3914073 348870..349553 1 NC_007793.1 putative lipoprotein 349553 3914073 SAUSA300_0297 Staphylococcus aureus subsp. aureus USA300_FPR3757 putative lipoprotein YP_493011.1 348870 D 451515 CDS YP_493012.1 87162042 3914318 350139..350639 1 NC_007793.1 identified by match to protein family HMM PF04634; match to protein family HMM TIGR01741; hypothetical protein 350639 3914318 SAUSA300_0298 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493012.1 350139 D 451515 CDS YP_493013.1 87160022 3912933 350651..351151 1 NC_007793.1 identified by match to protein family HMM PF04634; match to protein family HMM TIGR01741; hypothetical protein 351151 3912933 SAUSA300_0299 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493013.1 350651 D 451515 CDS YP_493014.1 87161258 3913867 351162..351662 1 NC_007793.1 identified by match to protein family HMM PF04634; match to protein family HMM TIGR01741; hypothetical protein 351662 3913867 SAUSA300_0300 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493014.1 351162 D 451515 CDS YP_493015.1 87161778 3913632 351673..352173 1 NC_007793.1 identified by match to protein family HMM PF04634; match to protein family HMM TIGR01741; hypothetical protein 352173 3913632 SAUSA300_0301 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493015.1 351673 D 451515 CDS YP_493016.1 87162330 3913814 352184..352672 1 NC_007793.1 identified by match to protein family HMM PF04634; match to protein family HMM TIGR01741; hypothetical protein 352672 3913814 SAUSA300_0302 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493016.1 352184 D 451515 CDS YP_493017.1 87160306 3914542 353295..353669 1 NC_007793.1 hypothetical protein 353669 3914542 SAUSA300_0303 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493017.1 353295 D 451515 CDS YP_493018.1 87161614 3913469 353822..354220 1 NC_007793.1 hypothetical protein 354220 3913469 SAUSA300_0304 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493018.1 353822 D 451515 CDS YP_493019.1 87161770 3913624 complement(354436..355131) 1 NC_007793.1 authenticated frameshift; identified by match to protein family HMM PF01226; formate/nitrite transporter family protein 355131 3913624 SAUSA300_0305 Staphylococcus aureus subsp. aureus USA300_FPR3757 formate/nitrite transporter family protein YP_493019.1 354436 R 451515 CDS YP_493020.1 87161757 3913902 complement(355497..356774) 1 NC_007793.1 identified by match to protein family HMM PF05525; match to protein family HMM TIGR00796; branched-chain amino acid transport system II carrier protein 356774 brnQ 3913902 brnQ Staphylococcus aureus subsp. aureus USA300_FPR3757 branched-chain amino acid transport system II carrier protein YP_493020.1 355497 R 451515 CDS YP_493021.1 87162313 3913447 357388..358278 1 NC_007793.1 identified by match to protein family HMM PF03767; match to protein family HMM TIGR01533; 5'-nucleotidase 358278 3913447 SAUSA300_0307 Staphylococcus aureus subsp. aureus USA300_FPR3757 5'-nucleotidase YP_493021.1 357388 D 451515 CDS YP_493022.1 87159937 3914983 358527..359576 1 NC_007793.1 identified by match to protein family HMM PF02687; ABC transporter permease 359576 3914983 SAUSA300_0308 Staphylococcus aureus subsp. aureus USA300_FPR3757 ABC transporter permease YP_493022.1 358527 D 451515 CDS YP_493023.1 87160835 3913556 359589..360266 1 NC_007793.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 360266 3913556 SAUSA300_0309 Staphylococcus aureus subsp. aureus USA300_FPR3757 ABC transporter ATP-binding protein YP_493023.1 359589 D 451515 CDS YP_493024.1 87162057 3914333 360474..361505 1 NC_007793.1 perfringolysin O regulator protein 361505 pfoR 3914333 pfoR Staphylococcus aureus subsp. aureus USA300_FPR3757 perfringolysin O regulator protein YP_493024.1 360474 D 451515 CDS YP_493025.1 87160990 3913322 361848..362966 1 NC_007793.1 identified by match to protein family HMM PF00294; PfkB family carbohydrate kinase 362966 3913322 SAUSA300_0311 Staphylococcus aureus subsp. aureus USA300_FPR3757 PfkB family carbohydrate kinase YP_493025.1 361848 D 451515 CDS YP_493026.1 87161742 3913028 362941..363864 1 NC_007793.1 identified by match to protein family HMM PF04227; hypothetical protein 363864 3913028 SAUSA300_0312 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493026.1 362941 D 451515 CDS YP_493027.1 87162331 3913815 363875..365095 1 NC_007793.1 identified by match to protein family HMM PF01773; match to protein family HMM PF07662; match to protein family HMM PF07670; putative nucleoside permease NupC 365095 3913815 SAUSA300_0313 Staphylococcus aureus subsp. aureus USA300_FPR3757 putative nucleoside permease NupC YP_493027.1 363875 D 451515 CDS YP_493028.1 87162319 3913453 complement(365200..366732) 1 NC_007793.1 identified by match to protein family HMM PF00474; match to protein family HMM TIGR00813; sodium:solute symporter family protein 366732 3913453 SAUSA300_0314 Staphylococcus aureus subsp. aureus USA300_FPR3757 sodium:solute symporter family protein YP_493028.1 365200 R 451515 CDS YP_493029.1 87162152 3914699 complement(366772..367653) 1 NC_007793.1 catalyzes the formation of pyruvate and N-acetylmannosamine from N-acetylneuraminic acid; N-acetylneuraminate lyase 367653 nanA 3914699 nanA Staphylococcus aureus subsp. aureus USA300_FPR3757 N-acetylneuraminate lyase YP_493029.1 366772 R 451515 CDS YP_493030.1 87161931 3914591 367811..368671 1 NC_007793.1 identified by match to protein family HMM PF00480; ROK family protein 368671 3914591 SAUSA300_0316 Staphylococcus aureus subsp. aureus USA300_FPR3757 ROK family protein YP_493030.1 367811 D 451515 CDS YP_493031.1 87160496 3915086 complement(368949..369749) 1 NC_007793.1 identified by match to protein family HMM PF01380; match to protein family HMM PF01418; hypothetical protein 369749 3915086 SAUSA300_0317 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493031.1 368949 R 451515 CDS YP_493032.1 87160809 3913041 369889..370557 1 NC_007793.1 Converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate; N-acetylmannosamine-6-phosphate 2-epimerase 370557 3913041 SAUSA300_0318 Staphylococcus aureus subsp. aureus USA300_FPR3757 N-acetylmannosamine-6-phosphate 2-epimerase YP_493032.1 369889 D 451515 CDS YP_493033.1 87161405 3914093 complement(370684..371997) 1 NC_007793.1 identified by match to protein family HMM PF07670; hypothetical protein 371997 3914093 SAUSA300_0319 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493033.1 370684 R 451515 CDS YP_493034.1 87162130 3913594 372415..374487 1 NC_007793.1 identified by match to protein family HMM PF04650; match to protein family HMM TIGR01168; triacylglycerol lipase 374487 3913594 SAUSA300_0320 Staphylococcus aureus subsp. aureus USA300_FPR3757 triacylglycerol lipase YP_493034.1 372415 D 451515 CDS YP_493035.1 87160897 3915148 complement(374729..375556) 1 NC_007793.1 hypothetical protein 375556 3915148 SAUSA300_0321 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493035.1 374729 R 451515 CDS YP_493036.1 87161663 3913165 complement(375629..376828) 1 NC_007793.1 identified by match to protein family HMM PF00724; Oye family NADH-dependent flavin oxidoreductase 376828 3913165 SAUSA300_0322 Staphylococcus aureus subsp. aureus USA300_FPR3757 Oye family NADH-dependent flavin oxidoreductase YP_493036.1 375629 R 451515 CDS YP_493037.1 87162396 3913919 376924..377016 1 NC_007793.1 hypothetical protein 377016 3913919 SAUSA300_0323 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493037.1 376924 D 451515 CDS YP_493038.1 87161672 3914437 377130..378131 1 NC_007793.1 identified by match to protein family HMM PF00296; hypothetical protein 378131 3914437 SAUSA300_0324 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493038.1 377130 D 451515 CDS YP_493039.1 87161132 3913721 378165..378497 1 NC_007793.1 identified by match to protein family HMM PF01597; glycine cleavage H-protein 378497 3913721 SAUSA300_0325 Staphylococcus aureus subsp. aureus USA300_FPR3757 glycine cleavage H-protein YP_493039.1 378165 D 451515 CDS YP_493040.1 87160881 3912958 378498..379298 1 NC_007793.1 identified by match to protein family HMM PF01661; hypothetical protein 379298 3912958 SAUSA300_0326 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493040.1 378498 D 451515 CDS YP_493041.1 87161578 3913647 379288..380232 1 NC_007793.1 hypothetical protein 380232 3913647 SAUSA300_0327 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493041.1 379288 D 451515 CDS YP_493042.1 87162193 3913890 380210..381232 1 NC_007793.1 identified by match to protein family HMM PF03099; match to protein family HMM TIGR00545; lipoate-protein ligase A family protein 381232 3913890 SAUSA300_0328 Staphylococcus aureus subsp. aureus USA300_FPR3757 lipoate-protein ligase A family protein YP_493042.1 380210 D 451515 CDS YP_493043.1 87160188 3913256 381547..382572 1 NC_007793.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF05368; match to protein family HMM PF07993; putative oxidoreductase 382572 3913256 SAUSA300_0329 Staphylococcus aureus subsp. aureus USA300_FPR3757 putative oxidoreductase YP_493043.1 381547 D 451515 CDS YP_493044.1 87161049 3912895 complement(382665..384011) 1 NC_007793.1 membrane component; functions with enzymes IIB (sgaB; ulaB) and IIA (sgaA; ulaC) enzyme I and HPr for anaerobic utilization and uptake of L-ascorbate; sgaTBA are regulated by yifQ as well as Crp and Fnr; PTS system ascorbate-specific transporter subunit IIC 384011 ulaA 3912895 ulaA Staphylococcus aureus subsp. aureus USA300_FPR3757 PTS system ascorbate-specific transporter subunit IIC YP_493044.1 382665 R 451515 CDS YP_493045.1 87161626 3913481 complement(384026..384310) 1 NC_007793.1 identified by match to protein family HMM PF02302; hypothetical protein 384310 3913481 SAUSA300_0331 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493045.1 384026 R 451515 CDS YP_493046.1 87159986 3914414 complement(384312..384755) 1 NC_007793.1 identified by match to protein family HMM PF00359; PTS system, IIA component 384755 3914414 SAUSA300_0332 Staphylococcus aureus subsp. aureus USA300_FPR3757 PTS system, IIA component YP_493046.1 384312 R 451515 CDS YP_493047.1 87160542 3914022 complement(384760..386715) 1 NC_007793.1 identified by match to protein family HMM PF00359; match to protein family HMM PF00874; match to protein family HMM PF05043; BglG family transcriptional antiterminator 386715 3914022 SAUSA300_0333 Staphylococcus aureus subsp. aureus USA300_FPR3757 BglG family transcriptional antiterminator YP_493047.1 384760 R 451515 CDS YP_493048.1 87160046 3912899 386927..387346 1 NC_007793.1 identified by match to protein family HMM PF01047; MarR family transcriptional regulator 387346 3912899 SAUSA300_0334 Staphylococcus aureus subsp. aureus USA300_FPR3757 MarR family transcriptional regulator YP_493048.1 386927 D 451515 CDS YP_493049.1 87160931 3914369 387453..388808 1 NC_007793.1 identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797; MATE efflux family protein 388808 3914369 SAUSA300_0335 Staphylococcus aureus subsp. aureus USA300_FPR3757 MATE efflux family protein YP_493049.1 387453 D 451515 CDS YP_493050.1 87160212 3913085 388912..389352 1 NC_007793.1 hypothetical protein 389352 3913085 SAUSA300_0336 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493050.1 388912 D 451515 CDS YP_493051.1 87162440 3915036 complement(389435..390793) 1 NC_007793.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00712; match to protein family HMM TIGR00881; glycerol-3-phosphate transporter 390793 glpT 3915036 glpT Staphylococcus aureus subsp. aureus USA300_FPR3757 glycerol-3-phosphate transporter YP_493051.1 389435 R 451515 CDS YP_493052.1 87161845 3913951 391101..392027 1 NC_007793.1 identified by match to protein family HMM PF00903; glyoxalase family protein 392027 3913951 SAUSA300_0338 Staphylococcus aureus subsp. aureus USA300_FPR3757 glyoxalase family protein YP_493052.1 391101 D 451515 CDS YP_493053.1 87161264 3915235 392041..393102 1 NC_007793.1 identified by match to protein family HMM PF00296; hypothetical protein 393102 3915235 SAUSA300_0339 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493053.1 392041 D 451515 CDS YP_493054.1 87162076 3914255 393116..393682 1 NC_007793.1 identified by match to protein family HMM PF03358; NADH-dependent FMN reductase 393682 3914255 SAUSA300_0340 Staphylococcus aureus subsp. aureus USA300_FPR3757 NADH-dependent FMN reductase YP_493054.1 393116 D 451515 CDS YP_493055.1 87161295 3914714 complement(393742..394737) 1 NC_007793.1 identified by match to protein family HMM PF03601; hypothetical protein 394737 3914714 SAUSA300_0341 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493055.1 393742 R 451515 CDS YP_493056.1 87160933 3914371 394736..395131 1 NC_007793.1 hypothetical protein 395131 3914371 SAUSA300_0342 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493056.1 394736 D 451515 CDS YP_493057.1 87160201 3913074 395211..395756 1 NC_007793.1 identified by match to protein family HMM PF00583; acetyltransferase 395756 3913074 SAUSA300_0343 Staphylococcus aureus subsp. aureus USA300_FPR3757 acetyltransferase YP_493057.1 395211 D 451515 CDS YP_493058.1 87162385 3913538 396024..396878 1 NC_007793.1 identified by match to protein family HMM PF04302; putative lipoprotein 396878 3913538 SAUSA300_0344 Staphylococcus aureus subsp. aureus USA300_FPR3757 putative lipoprotein YP_493058.1 396024 D 451515 CDS YP_493059.1 87161478 3914220 396875..398104 1 NC_007793.1 identified by match to protein family HMM PF04261; match to protein family HMM TIGR01409; match to protein family HMM TIGR01412; match to protein family HMM TIGR01413; Tat-translocated protein 398104 3914220 SAUSA300_0345 Staphylococcus aureus subsp. aureus USA300_FPR3757 Tat-translocated protein YP_493059.1 396875 D 451515 CDS YP_493060.1 87162289 3915329 398115..399797 1 NC_007793.1 hypothetical protein 399797 3915329 SAUSA300_0346 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493060.1 398115 D 451515 CDS YP_493061.1 87161523 3913197 complement(399889..400545) 1 NC_007793.1 identified by match to protein family HMM PF00902; match to protein family HMM TIGR00945; Sec-independent protein translocase TatC 400545 tatC 3913197 tatC Staphylococcus aureus subsp. aureus USA300_FPR3757 Sec-independent protein translocase TatC YP_493061.1 399889 R 451515 CDS YP_493062.1 87160387 3912813 complement(400607..400831) 1 NC_007793.1 identified by match to protein family HMM PF02416; match to protein family HMM TIGR01411; twin arginine-targeting protein translocase 400831 3912813 SAUSA300_0348 Staphylococcus aureus subsp. aureus USA300_FPR3757 twin arginine-targeting protein translocase YP_493062.1 400607 R 451515 CDS YP_493063.1 87161135 3913724 complement(400931..401320) 1 NC_007793.1 hypothetical protein 401320 3913724 SAUSA300_0349 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493063.1 400931 R 451515 CDS YP_493064.1 87160419 3913137 401561..401764 1 NC_007793.1 identified by match to protein family HMM PF01381; Cro/CI family transcriptional regulator-like protein 401764 3913137 SAUSA300_0350 Staphylococcus aureus subsp. aureus USA300_FPR3757 Cro/CI family transcriptional regulator-like protein YP_493064.1 401561 D 451515 CDS YP_493065.1 87161964 3914476 401761..402474 1 NC_007793.1 hypothetical protein 402474 3914476 SAUSA300_0351 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493065.1 401761 D 451515 CDS YP_493066.1 87161429 3914078 402499..403341 1 NC_007793.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 403341 3914078 SAUSA300_0352 Staphylococcus aureus subsp. aureus USA300_FPR3757 ABC transporter ATP-binding protein YP_493066.1 402499 D 451515 CDS YP_493067.1 87160824 3913545 403341..403970 1 NC_007793.1 hypothetical protein 403970 3913545 SAUSA300_0353 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493067.1 403341 D 451515 CDS YP_493068.1 87160261 3913663 complement(404337..405470) 1 NC_007793.1 identified by match to protein family HMM PF06772; hypothetical protein 405470 ltrA 3913663 ltrA Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493068.1 404337 R 451515 CDS YP_493069.1 87162414 3915261 406009..407190 1 NC_007793.1 identified by match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930; acetyl-CoA acetyltransferase 407190 3915261 SAUSA300_0355 Staphylococcus aureus subsp. aureus USA300_FPR3757 acetyl-CoA acetyltransferase YP_493069.1 406009 D 451515 CDS YP_493070.1 87160587 3915206 complement(407273..408025) 1 NC_007793.1 identified by match to protein family HMM PF04199; hypothetical protein 408025 3915206 SAUSA300_0356 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493070.1 407273 R 451515 CDS YP_493071.1 87160966 3915361 complement(408068..410296) 1 NC_007793.1 catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine to form methionine; 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase 410296 metE 3915361 metE Staphylococcus aureus subsp. aureus USA300_FPR3757 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase YP_493071.1 408068 R 451515 CDS YP_493072.1 87161700 3914465 complement(410293..412134) 1 NC_007793.1 catalyzes the formation of 5,10-methylenetetrahydrofolate from 5-methyltetrahydrofolate and S-adenosyl-L-homocysteine and methionine from S-adenosyl-L-methionine and L-homocysteine; expressed in B. subtilis under methionine starvation conditions; bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein 412134 3914465 SAUSA300_0358 Staphylococcus aureus subsp. aureus USA300_FPR3757 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein YP_493072.1 410293 R 451515 CDS YP_493073.1 87160177 3914529 complement(412103..413263) 1 NC_007793.1 identified by match to protein family HMM PF01053; trans-sulfuration enzyme family protein 413263 3914529 SAUSA300_0359 Staphylococcus aureus subsp. aureus USA300_FPR3757 trans-sulfuration enzyme family protein YP_493073.1 412103 R 451515 CDS YP_493074.1 87160890 3912967 complement(413260..414363) 1 NC_007793.1 identified by match to protein family HMM PF01053; Cys/Met metabolism PLP-dependent enzyme 414363 3912967 SAUSA300_0360 Staphylococcus aureus subsp. aureus USA300_FPR3757 Cys/Met metabolism PLP-dependent enzyme YP_493074.1 413260 R 451515 CDS YP_493075.1 87161316 3914812 415027..415872 1 NC_007793.1 identified by match to protein family HMM PF02195; match to protein family HMM TIGR00180; ParB-like partition protein 415872 3914812 SAUSA300_0361 Staphylococcus aureus subsp. aureus USA300_FPR3757 ParB-like partition protein YP_493075.1 415027 D 451515 CDS YP_493076.1 87161987 3914884 416029..416910 1 NC_007793.1 identified by match to protein family HMM PF00924; hypothetical protein 416910 3914884 SAUSA300_0362 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493076.1 416029 D 451515 CDS YP_493077.1 87160486 3913341 416940..417143 1 NC_007793.1 identified by match to protein family HMM PF06107; hypothetical protein 417143 3913341 SAUSA300_0363 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493077.1 416940 D 451515 CDS YP_493078.1 87160850 3913396 417155..418252 1 NC_007793.1 translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD 418252 ychF 3913396 ychF Staphylococcus aureus subsp. aureus USA300_FPR3757 GTP-dependent nucleic acid-binding protein EngD YP_493078.1 417155 D 451515 CDS YP_493079.1 87161513 3913226 complement(418338..418529) 1 NC_007793.1 hypothetical protein 418529 3913226 SAUSA300_0365 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493079.1 418338 R 451515 CDS YP_493080.1 87161421 3914070 418773..419069 1 NC_007793.1 binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 419069 rpsF 3914070 rpsF Staphylococcus aureus subsp. aureus USA300_FPR3757 30S ribosomal protein S6 YP_493080.1 418773 D 451515 CDS YP_493081.1 87160410 3912855 419090..419593 1 NC_007793.1 identified by match to protein family HMM PF00436; match to protein family HMM TIGR00621; single-strand binding protein 419593 ssb 3912855 ssb Staphylococcus aureus subsp. aureus USA300_FPR3757 single-strand binding protein YP_493081.1 419090 D 451515 CDS YP_493082.1 87160951 3913791 419645..419887 1 NC_007793.1 binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 419887 rpsR 3913791 rpsR Staphylococcus aureus subsp. aureus USA300_FPR3757 30S ribosomal protein S18 YP_493082.1 419645 D 451515 CDS YP_493083.1 87161226 3914780 complement(420153..421091) 1 NC_007793.1 identified by match to protein family HMM PF07751; hypothetical protein 421091 3914780 SAUSA300_0369 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493083.1 420153 R 451515 CDS YP_493084.1 87162443 3915039 422037..422648 1 NC_007793.1 putative enterotoxin 422648 3915039 SAUSA300_0370 Staphylococcus aureus subsp. aureus USA300_FPR3757 putative enterotoxin YP_493084.1 422037 D 451515 CDS YP_493085.1 87159896 3914942 423017..423385 1 NC_007793.1 identified by match to protein family HMM PF06486; match to protein family HMM TIGR01655; hypothetical protein 423385 3914942 SAUSA300_0371 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493085.1 423017 D 451515 CDS YP_493086.1 87160674 3915051 423566..424138 1 NC_007793.1 identified by match to protein family HMM PF03413; hypothetical protein 424138 3915051 SAUSA300_0372 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493086.1 423566 D 451515 CDS YP_493087.1 87160756 3913419 complement(424276..424539) 1 NC_007793.1 hypothetical protein 424539 3913419 SAUSA300_0373 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493087.1 424276 R 451515 CDS YP_493088.1 87161847 3913953 424839..425090 1 NC_007793.1 identified by match to protein family HMM PF04226; hypothetical protein 425090 3913953 SAUSA300_0374 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493088.1 424839 D 451515 CDS YP_493089.1 87161895 3914406 425516..426097 1 NC_007793.1 identified by match to protein family HMM PF00300; putative phosphoglycerate mutase family protein 426097 3914406 SAUSA300_0375 Staphylococcus aureus subsp. aureus USA300_FPR3757 putative phosphoglycerate mutase family protein YP_493089.1 425516 D 451515 CDS YP_493090.1 87160210 3913083 complement(426163..426546) 1 NC_007793.1 hypothetical protein 426546 3913083 SAUSA300_0376 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493090.1 426163 R 451515 CDS YP_493091.1 87160761 3913736 complement(426801..427427) 1 NC_007793.1 hypothetical protein 427427 3913736 SAUSA300_0377 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493091.1 426801 R 451515 CDS YP_493092.1 87161660 3913162 complement(427500..427793) 1 NC_007793.1 hypothetical protein 427793 3913162 SAUSA300_0378 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493092.1 427500 R 451515 CDS YP_493093.1 87161642 3913692 complement(427872..429395) 1 NC_007793.1 identified by match to protein family HMM PF00070; match to protein family HMM PF07992; alkyl hydroperoxide reductase subunit F 429395 ahpF 3913692 ahpF Staphylococcus aureus subsp. aureus USA300_FPR3757 alkyl hydroperoxide reductase subunit F YP_493093.1 427872 R 451515 CDS YP_493094.1 87162200 3914843 complement(429411..429980) 1 NC_007793.1 identified by match to protein family HMM PF00578; alkyl hydroperoxide reductase subunit C 429980 ahpC 3914843 ahpC Staphylococcus aureus subsp. aureus USA300_FPR3757 alkyl hydroperoxide reductase subunit C YP_493094.1 429411 R 451515 CDS YP_493095.1 87160677 3915054 430472..431227 1 NC_007793.1 identified by match to protein family HMM PF00881; putative NAD(P)H-flavin oxidoreductase 431227 3915054 SAUSA300_0381 Staphylococcus aureus subsp. aureus USA300_FPR3757 putative NAD(P)H-flavin oxidoreductase YP_493095.1 430472 D 451515 CDS YP_493096.1 87161047 3912892 complement(431308..432696) 1 NC_007793.1 identified by match to protein family HMM PF00375; sodium:dicarboxylate symporter family protein 432696 3912892 SAUSA300_0382 Staphylococcus aureus subsp. aureus USA300_FPR3757 sodium:dicarboxylate symporter family protein YP_493096.1 431308 R 451515 CDS YP_493097.1 87161220 3912795 complement(433673..434629) 1 NC_007793.1 hypothetical protein 434629 3912795 SAUSA300_0383 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493097.1 433673 R 451515 CDS YP_493098.1 87160372 3913246 complement(434747..435409) 1 NC_007793.1 hypothetical protein 435409 3913246 SAUSA300_0384 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493098.1 434747 R 451515 CDS YP_493099.1 87161713 3915279 complement(435552..435959) 1 NC_007793.1 hypothetical protein 435959 3915279 SAUSA300_0385 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493099.1 435552 R 451515 CDS YP_493100.1 87162169 3915200 436472..437050 1 NC_007793.1 Catalyzes the transfer of the phosphoribosyl moiety from 5-phospho--D-ribosyl-1-pyrophosphate (PRib-PP) to the 6-oxo-guanine and -xanthine; xanthine phosphoribosyltransferase 437050 xpt 3915200 xpt Staphylococcus aureus subsp. aureus USA300_FPR3757 xanthine phosphoribosyltransferase YP_493100.1 436472 D 451515 CDS YP_493101.1 87160296 3914532 437050..438318 1 NC_007793.1 identified by match to protein family HMM PF00860; match to protein family HMM TIGR00801; xanthine permease 438318 pbuX 3914532 pbuX Staphylococcus aureus subsp. aureus USA300_FPR3757 xanthine permease YP_493101.1 437050 D 451515 CDS YP_493102.1 87160055 3912908 438356..439822 1 NC_007793.1 identified by match to protein family HMM PF00478; match to protein family HMM PF00571; match to protein family HMM TIGR01302; inosine-5'-monophosphate dehydrogenase 439822 guaB 3912908 guaB Staphylococcus aureus subsp. aureus USA300_FPR3757 inosine-5'-monophosphate dehydrogenase YP_493102.1 438356 D 451515 CDS YP_493103.1 87160103 3913366 439847..441388 1 NC_007793.1 contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase 441388 guaA 3913366 guaA Staphylococcus aureus subsp. aureus USA300_FPR3757 GMP synthase YP_493103.1 439847 D 451515 CDS YP_493104.1 87161633 3913683 complement(441501..442037) 1 NC_007793.1 hypothetical protein 442037 3913683 SAUSA300_0390 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493104.1 441501 R 451515 CDS YP_493105.1 87162184 3913881 complement(442430..443134) 1 NC_007793.1 hypothetical protein 443134 3913881 SAUSA300_0391 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493105.1 442430 R 451515 CDS YP_493106.1 87160483 3913338 complement(444066..444218) 1 NC_007793.1 hypothetical protein 444218 3913338 SAUSA300_0392 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493106.1 444066 R 451515 CDS YP_493107.1 87160487 3913342 complement(444742..445101) 1 NC_007793.1 identified by match to protein family HMM PF06993; hypothetical protein 445101 3913342 SAUSA300_0393 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493107.1 444742 R 451515 CDS YP_493108.1 87161753 3913898 complement(445120..445965) 1 NC_007793.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF05368; FAD/NAD(P)-binding Rossmann fold superfamily protein 445965 3913898 SAUSA300_0394 Staphylococcus aureus subsp. aureus USA300_FPR3757 FAD/NAD(P)-binding Rossmann fold superfamily protein YP_493108.1 445120 R 451515 CDS YP_493109.1 87160089 3914922 446437..447117 1 NC_007793.1 these proteins share structural homology to known superantigen proteins but do not exhibit any of the properties expected such as histocompatibility complex class II binding or broad T-cell activation; superantigen-like protein 447117 3914922 SAUSA300_0395 Staphylococcus aureus subsp. aureus USA300_FPR3757 superantigen-like protein YP_493109.1 446437 D 451515 CDS YP_493110.1 87161928 3914588 447403..448098 1 NC_007793.1 these proteins share structural homology to known superantigen proteins but do not exhibit any of the properties expected such as histocompatibility complex class II binding or broad T-cell activation; superantigen-like protein 448098 set7 3914588 set7 Staphylococcus aureus subsp. aureus USA300_FPR3757 superantigen-like protein YP_493110.1 447403 D 451515 CDS YP_493111.1 87161535 3914661 448389..449447 1 NC_007793.1 these proteins share structural homology to known superantigen proteins but do not exhibit any of the properties expected such as histocompatibility complex class II binding or broad T-cell activation; superantigen-like protein 449447 3914661 SAUSA300_0397 Staphylococcus aureus subsp. aureus USA300_FPR3757 superantigen-like protein YP_493111.1 448389 D 451515 CDS YP_493112.1 87160066 3913290 449812..450738 1 NC_007793.1 these proteins share structural homology to known superantigen proteins but do not exhibit any of the properties expected such as histocompatibility complex class II binding or broad T-cell activation; superantigen-like protein 450738 3913290 SAUSA300_0398 Staphylococcus aureus subsp. aureus USA300_FPR3757 superantigen-like protein YP_493112.1 449812 D 451515 CDS YP_493113.1 87160249 3915140 451102..451806 1 NC_007793.1 SSL5, SET3, SET10; bind P-selectin glycoprotein ligand-1 and inhibit P-selectin-mediated neutrophil rolling along the endothelium; these proteins share structural homology to known superantigens but do not exhibit any of the properties expected such as histocompatibility complex class II binding or broad T-cell activation; superantigen-like protein 5 451806 3915140 SAUSA300_0399 Staphylococcus aureus subsp. aureus USA300_FPR3757 superantigen-like protein 5 YP_493113.1 451102 D 451515 CDS YP_493114.1 87160396 3912841 452252..452947 1 NC_007793.1 these proteins share structural homology to known superantigen proteins but do not exhibit any of the properties expected such as histocompatibility complex class II binding or broad T-cell activation; superantigen-like protein 452947 3912841 SAUSA300_0400 Staphylococcus aureus subsp. aureus USA300_FPR3757 superantigen-like protein YP_493114.1 452252 D 451515 CDS YP_493115.1 87162297 3913606 453368..454063 1 NC_007793.1 SSL7, SET1; blocks IgA-FcR interactions and inhibits complement, leading to increased survival of a sensitive bacterium in blood; superantigen-like protein 7 454063 3913606 SAUSA300_0401 Staphylococcus aureus subsp. aureus USA300_FPR3757 superantigen-like protein 7 YP_493115.1 453368 D 451515 CDS YP_493116.1 87160562 3913517 454407..455105 1 NC_007793.1 these proteins share structural homology to known superantigen proteins but do not exhibit any of the properties expected such as histocompatibility complex class II binding or broad T-cell activation; superantigen-like protein 455105 3913517 SAUSA300_0402 Staphylococcus aureus subsp. aureus USA300_FPR3757 superantigen-like protein YP_493116.1 454407 D 451515 CDS YP_493117.1 87161416 3914104 455485..456183 1 NC_007793.1 these proteins share structural homology to known superantigen proteins but do not exhibit any of the properties expected such as histocompatibility complex class II binding or broad T-cell activation; superantigen-like protein 456183 3914104 SAUSA300_0403 Staphylococcus aureus subsp. aureus USA300_FPR3757 superantigen-like protein YP_493117.1 455485 D 451515 CDS YP_493118.1 87162401 3913924 456549..457232 1 NC_007793.1 these proteins share structural homology to known superantigen proteins but do not exhibit any of the properties expected such as histocompatibility complex class II binding or broad T-cell activation; superantigen-like protein 457232 3913924 SAUSA300_0404 Staphylococcus aureus subsp. aureus USA300_FPR3757 superantigen-like protein YP_493118.1 456549 D 451515 CDS YP_493119.1 87160229 3913767 457496..459052 1 NC_007793.1 identified by match to protein family HMM PF02384; match to protein family HMM TIGR00497; type I restriction-modification system, M subunit 459052 hsdM 3913767 hsdM Staphylococcus aureus subsp. aureus USA300_FPR3757 type I restriction-modification system, M subunit YP_493119.1 457496 D 451515 CDS YP_493120.1 87159955 3913842 459045..460256 1 NC_007793.1 identified by match to protein family HMM PF01420; putative restriction/modification system specificity protein 460256 3913842 SAUSA300_0406 Staphylococcus aureus subsp. aureus USA300_FPR3757 putative restriction/modification system specificity protein YP_493120.1 459045 D 451515 CDS YP_493121.1 87160668 3915045 460639..461316 1 NC_007793.1 these proteins share structural homology to known superantigen proteins but do not exhibit any of the properties expected such as histocompatibility complex class II binding or broad T-cell activation; superantigen-like protein 461316 3915045 SAUSA300_0407 Staphylococcus aureus subsp. aureus USA300_FPR3757 superantigen-like protein YP_493121.1 460639 D 451515 CDS YP_493122.1 87162088 3914631 461338..462846 1 NC_007793.1 identified by match to protein family HMM TIGR01168; hypothetical protein 462846 3914631 SAUSA300_0408 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493122.1 461338 D 451515 CDS YP_493123.1 87160473 3913328 complement(462949..463257) 1 NC_007793.1 hypothetical protein 463257 3913328 SAUSA300_0409 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493123.1 462949 R 451515 CDS YP_493124.1 87161050 3912896 463595..464398 1 NC_007793.1 identified by match to protein family HMM PF04507; match to protein family HMM TIGR01742; tandem lipoprotein 464398 3912896 SAUSA300_0410 Staphylococcus aureus subsp. aureus USA300_FPR3757 tandem lipoprotein YP_493124.1 463595 D 451515 CDS YP_493125.1 87160691 3914185 464429..465229 1 NC_007793.1 identified by match to protein family HMM PF04507; match to protein family HMM TIGR01742; tandem lipoprotein 465229 3914185 SAUSA300_0411 Staphylococcus aureus subsp. aureus USA300_FPR3757 tandem lipoprotein YP_493125.1 464429 D 451515 CDS YP_493126.1 87160826 3913547 466101..466904 1 NC_007793.1 identified by match to protein family HMM PF04507; match to protein family HMM TIGR01742; tandem lipoprotein 466904 3913547 SAUSA300_0413 Staphylococcus aureus subsp. aureus USA300_FPR3757 tandem lipoprotein YP_493126.1 466101 D 451515 CDS YP_493127.1 87160098 3914931 466923..467693 1 NC_007793.1 identified by match to protein family HMM PF04507; match to protein family HMM TIGR01742; tandem lipoprotein 467693 3914931 SAUSA300_0414 Staphylococcus aureus subsp. aureus USA300_FPR3757 tandem lipoprotein YP_493127.1 466923 D 451515 CDS YP_493128.1 87161937 3914597 467725..468516 1 NC_007793.1 identified by match to protein family HMM PF04507; match to protein family HMM TIGR01742; tandem lipoprotein 468516 lpl3 3914597 lpl3 Staphylococcus aureus subsp. aureus USA300_FPR3757 tandem lipoprotein YP_493128.1 467725 D 451515 CDS YP_493129.1 87160391 3912817 468586..469362 1 NC_007793.1 identified by match to protein family HMM PF04507; match to protein family HMM TIGR01742; tandem lipoprotein 469362 3912817 SAUSA300_0416 Staphylococcus aureus subsp. aureus USA300_FPR3757 tandem lipoprotein YP_493129.1 468586 D 451515 CDS YP_493130.1 87161134 3913723 469538..470353 1 NC_007793.1 identified by match to protein family HMM PF04507; match to protein family HMM TIGR01742; tandem lipoprotein 470353 3913723 SAUSA300_0417 Staphylococcus aureus subsp. aureus USA300_FPR3757 tandem lipoprotein YP_493130.1 469538 D 451515 CDS YP_493131.1 87160465 3913066 470372..471157 1 NC_007793.1 identified by match to protein family HMM PF04507; match to protein family HMM TIGR01742; tandem lipoprotein 471157 3913066 SAUSA300_0418 Staphylococcus aureus subsp. aureus USA300_FPR3757 tandem lipoprotein YP_493131.1 470372 D 451515 CDS YP_493132.1 87160015 3912926 471340..472152 1 NC_007793.1 identified by match to protein family HMM PF04507; match to protein family HMM TIGR01742; tandem lipoprotein 472152 3912926 SAUSA300_0419 Staphylococcus aureus subsp. aureus USA300_FPR3757 tandem lipoprotein YP_493132.1 471340 D 451515 CDS YP_493133.1 87162308 3913617 472142..473470 1 NC_007793.1 hypothetical protein 473470 3913617 SAUSA300_0420 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493133.1 472142 D 451515 CDS YP_493134.1 87161608 3914392 473467..473790 1 NC_007793.1 hypothetical protein 473790 3914392 SAUSA300_0421 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493134.1 473467 D 451515 CDS YP_493135.1 87160223 3913761 473809..474123 1 NC_007793.1 hypothetical protein 474123 3913761 SAUSA300_0422 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493135.1 473809 D 451515 CDS YP_493136.1 87160936 3913776 complement(474413..474673) 1 NC_007793.1 hypothetical protein 474673 3913776 SAUSA300_0423 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493136.1 474413 R 451515 CDS YP_493137.1 87160656 3913980 474792..475994 1 NC_007793.1 identified by match to protein family HMM PF02492; match to protein family HMM PF07683; putative cobalamin synthesis protein 475994 3913980 SAUSA300_0424 Staphylococcus aureus subsp. aureus USA300_FPR3757 putative cobalamin synthesis protein YP_493137.1 474792 D 451515 CDS YP_493138.1 87161383 3914153 477582..479066 1 NC_007793.1 Catalyzes the transfer of electrons from NADH to ubiquinone; NADH dehydrogenase subunit 5 479066 3914153 SAUSA300_0425 Staphylococcus aureus subsp. aureus USA300_FPR3757 NADH dehydrogenase subunit 5 YP_493138.1 477582 D 451515 CDS YP_493139.1 87162386 3913539 479079..481784 1 NC_007793.1 hypothetical protein 481784 3913539 SAUSA300_0426 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493139.1 479079 D 451515 CDS YP_493140.1 87159891 3914937 481946..482308 1 NC_007793.1 hypothetical protein 482308 3914937 SAUSA300_0427 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493140.1 481946 D 451515 CDS YP_493141.1 87161096 3914302 complement(482537..482953) 1 NC_007793.1 hypothetical protein 482953 3914302 SAUSA300_0428 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493141.1 482537 R 451515 CDS YP_493142.1 87161638 3913688 482991..483665 1 NC_007793.1 identified by match to protein family HMM PF01569; hypothetical protein 483665 3913688 SAUSA300_0429 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493142.1 482991 D 451515 CDS YP_493143.1 87162095 3914638 483702..484436 1 NC_007793.1 hypothetical protein 484436 3914638 SAUSA300_0430 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493143.1 483702 D 451515 CDS YP_493144.1 87162177 3913874 484614..484727 1 NC_007793.1 hypothetical protein 484727 3913874 SAUSA300_0431 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493144.1 484614 D 451515 CDS YP_493145.1 87162141 3914688 484892..486229 1 NC_007793.1 identified by match to protein family HMM PF00209; sodium dependent transporter 486229 3914688 SAUSA300_0432 Staphylococcus aureus subsp. aureus USA300_FPR3757 sodium dependent transporter YP_493145.1 484892 D 451515 CDS YP_493146.1 87161224 3914778 486446..487360 1 NC_007793.1 identified by match to protein family HMM PF00291; cysteine synthase/cystathionine beta-synthase 487360 cysM 3914778 cysM Staphylococcus aureus subsp. aureus USA300_FPR3757 cysteine synthase/cystathionine beta-synthase YP_493146.1 486446 D 451515 CDS YP_493147.1 87160595 3915214 487344..488486 1 NC_007793.1 identified by match to protein family HMM PF00266; match to protein family HMM PF01053; cystathionine gamma-synthase 488486 metB 3915214 metB Staphylococcus aureus subsp. aureus USA300_FPR3757 cystathionine gamma-synthase YP_493147.1 487344 D 451515 CDS YP_493148.1 87162423 3915270 488780..489805 1 NC_007793.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 489805 3915270 SAUSA300_0435 Staphylococcus aureus subsp. aureus USA300_FPR3757 ABC transporter ATP-binding protein YP_493148.1 488780 D 451515 CDS YP_493149.1 87161549 3914676 489809..490468 1 NC_007793.1 identified by match to protein family HMM PF00528; ABC transporter permease 490468 3914676 SAUSA300_0436 Staphylococcus aureus subsp. aureus USA300_FPR3757 ABC transporter permease YP_493149.1 489809 D 451515 CDS YP_493150.1 87160788 3914608 490505..491347 1 NC_007793.1 identified by match to protein family HMM PF03180; NLPA lipoprotein 491347 3914608 SAUSA300_0437 Staphylococcus aureus subsp. aureus USA300_FPR3757 NLPA lipoprotein YP_493150.1 490505 D 451515 CDS YP_493151.1 87160062 3912915 491679..492683 1 NC_007793.1 identified by match to protein family HMM PF01476; match to protein family HMM PF05257; CHAP domain-contain protein 492683 3912915 SAUSA300_0438 Staphylococcus aureus subsp. aureus USA300_FPR3757 CHAP domain-contain protein YP_493151.1 491679 D 451515 CDS YP_493152.1 87160072 3913296 complement(492868..493137) 1 NC_007793.1 hypothetical protein 493137 3913296 SAUSA300_0439 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493152.1 492868 R 451515 CDS YP_493153.1 87162255 3913173 493286..493681 1 NC_007793.1 identified by match to protein family HMM PF00293; MutT/nudix family protein 493681 3913173 SAUSA300_0440 Staphylococcus aureus subsp. aureus USA300_FPR3757 MutT/nudix family protein YP_493153.1 493286 D 451515 CDS YP_493154.1 87162028 3914285 493671..494156 1 NC_007793.1 identified by match to protein family HMM PF00583; acetyltransferase 494156 3914285 SAUSA300_0441 Staphylococcus aureus subsp. aureus USA300_FPR3757 acetyltransferase YP_493154.1 493671 D 451515 CDS YP_493155.1 87161288 3914707 complement(494325..495107) 1 NC_007793.1 identified by match to protein family HMM PF07907; hypothetical protein 495107 3914707 SAUSA300_0442 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493155.1 494325 R 451515 CDS YP_493156.1 87161114 3914340 complement(495104..496216) 1 NC_007793.1 identified by match to protein family HMM PF07907; hypothetical protein 496216 3914340 SAUSA300_0443 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493156.1 495104 R 451515 CDS YP_493157.1 87160390 3912816 complement(496337..497221) 1 NC_007793.1 identified by match to protein family HMM PF00126; LysR family regulatory protein 497221 gltC 3912816 gltC Staphylococcus aureus subsp. aureus USA300_FPR3757 LysR family regulatory protein YP_493157.1 496337 R 451515 CDS YP_493158.1 87160411 3912856 497402..501901 1 NC_007793.1 identified by match to protein family HMM PF00310; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04898; glutamate synthase, large subunit 501901 gltB 3912856 gltB Staphylococcus aureus subsp. aureus USA300_FPR3757 glutamate synthase, large subunit YP_493158.1 497402 D 451515 CDS YP_493159.1 87162274 3915314 501919..503382 1 NC_007793.1 glutamate synthase is composed of subunits alpha and beta; beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate; glutamate synthase subunit beta 503382 gltD 3915314 gltD Staphylococcus aureus subsp. aureus USA300_FPR3757 glutamate synthase subunit beta YP_493159.1 501919 D 451515 CDS YP_493160.1 87161556 3915171 504214..505641 1 NC_007793.1 identified by match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR01992; PTS system, trehalose-specific IIBC component 505641 treP 3915171 treP Staphylococcus aureus subsp. aureus USA300_FPR3757 PTS system, trehalose-specific IIBC component YP_493160.1 504214 D 451515 CDS YP_493161.1 87160192 3913260 505705..507345 1 NC_007793.1 identified by match to protein family HMM PF00128; match to protein family HMM TIGR02403; alpha,alpha-phosphotrehalase 507345 treC 3913260 treC Staphylococcus aureus subsp. aureus USA300_FPR3757 alpha,alpha-phosphotrehalase YP_493161.1 505705 D 451515 CDS YP_493162.1 87160023 3912934 507370..508098 1 NC_007793.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07702; match to protein family HMM TIGR02404; trehalose operon repressor 508098 treR 3912934 treR Staphylococcus aureus subsp. aureus USA300_FPR3757 trehalose operon repressor YP_493162.1 507370 D 451515 CDS YP_493163.1 87162004 3915375 508737..509261 1 NC_007793.1 identified by match to protein family HMM PF00583; acetyltransferase 509261 3915375 SAUSA300_0451 Staphylococcus aureus subsp. aureus USA300_FPR3757 acetyltransferase YP_493163.1 508737 D 451515 CDS YP_493164.1 87161398 3914168 509354..511027 1 NC_007793.1 identified by match to protein family HMM PF00004; match to protein family HMM TIGR02397; DNA polymerase III subunit gamma and tau 511027 dnaX 3914168 dnaX Staphylococcus aureus subsp. aureus USA300_FPR3757 DNA polymerase III subunit gamma and tau YP_493164.1 509354 D 451515 CDS YP_493165.1 87160949 3913789 511117..511434 1 NC_007793.1 identified by match to protein family HMM PF02575; match to protein family HMM TIGR00103; hypothetical protein 511434 3913789 SAUSA300_0453 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493165.1 511117 D 451515 CDS YP_493166.1 87159968 3914820 511441..512037 1 NC_007793.1 involved in a recombinational process of DNA repair, independent of the recBC complex; recombination protein RecR 512037 recR 3914820 recR Staphylococcus aureus subsp. aureus USA300_FPR3757 recombination protein RecR YP_493166.1 511441 D 451515 CDS YP_493167.1 87162127 3913591 518801..520138 1 NC_007793.1 identified by match to protein family HMM PF01276; match to protein family HMM PF03711; Orn/Lys/Arg decarboxylase 520138 3913591 SAUSA300_0458 Staphylococcus aureus subsp. aureus USA300_FPR3757 Orn/Lys/Arg decarboxylase YP_493167.1 518801 D 451515 CDS YP_493168.1 87162349 3914198 520140..520757 1 NC_007793.1 catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP); thymidylate kinase 520757 tmk 3914198 tmk Staphylococcus aureus subsp. aureus USA300_FPR3757 thymidylate kinase YP_493168.1 520140 D 451515 CDS YP_493169.1 87160669 3915046 520785..521114 1 NC_007793.1 identified by match to protein family HMM PF06153; hypothetical protein 521114 3915046 SAUSA300_0460 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493169.1 520785 D 451515 CDS YP_493170.1 87160893 3912970 521328..522254 1 NC_007793.1 DNA polymerase III subunit delta 522254 holB 3912970 holB Staphylococcus aureus subsp. aureus USA300_FPR3757 DNA polymerase III subunit delta YP_493170.1 521328 D 451515 CDS YP_493171.1 87160488 3913343 522255..523058 1 NC_007793.1 identified by match to protein family HMM PF04468; hypothetical protein 523058 3913343 SAUSA300_0462 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493171.1 522255 D 451515 CDS YP_493172.2 162138565 3915001 523075..523422 1 NC_007793.1 in Bacillus subtilis this protein is involved in the negative regulation of DNA replication initiation; interacts with DnaN and DnaA; DNA replication intiation control protein YabA 523422 3915001 SAUSA300_0463 Staphylococcus aureus subsp. aureus USA300_FPR3757 DNA replication intiation control protein YabA YP_493172.2 523075 D 451515 CDS YP_493173.1 87160180 3913248 523696..524421 1 NC_007793.1 identified by match to protein family HMM PF05175; hypothetical protein 524421 3913248 SAUSA300_0464 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493173.1 523696 D 451515 CDS YP_493174.1 87160728 3913429 524414..524662 1 NC_007793.1 identified by match to protein family HMM PF01541; hypothetical protein 524662 3913429 SAUSA300_0465 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493174.1 524414 D 451515 CDS YP_493175.1 87160205 3913078 524664..525503 1 NC_007793.1 identified by match to protein family HMM PF00590; match to protein family HMM TIGR00096; hypothetical protein 525503 3913078 SAUSA300_0466 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493175.1 524664 D 451515 CDS YP_493176.1 87162044 3914320 525789..527762 1 NC_007793.1 methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase 527762 metS 3914320 metS Staphylococcus aureus subsp. aureus USA300_FPR3757 methionyl-tRNA synthetase YP_493176.1 525789 D 451515 CDS YP_493177.1 87161175 3914749 527793..528566 1 NC_007793.1 identified by match to protein family HMM PF01026; match to protein family HMM PF04909; match to protein family HMM TIGR00010; TatD family hydrolase 528566 3914749 SAUSA300_0468 Staphylococcus aureus subsp. aureus USA300_FPR3757 TatD family hydrolase YP_493177.1 527793 D 451515 CDS YP_493178.1 87161174 3914748 528733..529269 1 NC_007793.1 identified by match to protein family HMM PF01751; match to protein family HMM TIGR00334; hypothetical protein 529269 3914748 SAUSA300_0469 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493178.1 528733 D 451515 CDS YP_493179.1 87160474 3913329 529280..530173 1 NC_007793.1 catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; dimethyladenosine transferase 530173 ksgA 3913329 ksgA Staphylococcus aureus subsp. aureus USA300_FPR3757 dimethyladenosine transferase YP_493179.1 529280 D 451515 CDS YP_493180.1 87162405 3913928 530273..530536 1 NC_007793.1 identified by similarity to SP:P37466; match to protein family HMM PF06257; hypothetical protein 530536 3913928 SAUSA300_0471 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493180.1 530273 D 451515 CDS YP_493181.1 87161506 3913219 530846..531694 1 NC_007793.1 An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 531694 ipk 3913219 ipk Staphylococcus aureus subsp. aureus USA300_FPR3757 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase YP_493181.1 530846 D 451515 CDS YP_493182.1 87161740 3913026 531708..532532 1 NC_007793.1 identified by match to protein family HMM PF00156; match to protein family HMM TIGR01743; pur operon repressor 532532 purR 3913026 purR Staphylococcus aureus subsp. aureus USA300_FPR3757 pur operon repressor YP_493182.1 531708 D 451515 CDS YP_493183.1 87162271 3915311 532549..532929 1 NC_007793.1 identified by match to protein family HMM PF01042; match to protein family HMM TIGR00004; putative endoribonuclease L-PSP 532929 3915311 SAUSA300_0474 Staphylococcus aureus subsp. aureus USA300_FPR3757 putative endoribonuclease L-PSP YP_493183.1 532549 D 451515 CDS YP_493184.1 87161255 3913864 533001..533303 1 NC_007793.1 stage V sporulation protein G; essential for spore formation and a negative regulator of asymmetric septation in Bacillus; involved in methicillin-resistance, biofilm formation and capsular polysaccharide synthesis in Staphylococcus; regulatory protein SpoVG 533303 3913864 SAUSA300_0475 Staphylococcus aureus subsp. aureus USA300_FPR3757 regulatory protein SpoVG YP_493184.1 533001 D 451515 CDS YP_493185.1 87161830 3913801 533493..533624 1 NC_007793.1 hypothetical protein 533624 3913801 SAUSA300_0476 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493185.1 533493 D 451515 CDS YP_493186.1 87161099 3914305 533647..534999 1 NC_007793.1 forms a homotrimer; catalyzes the acetylation of glucosamine-1-phosphate and uridylation of N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc; function in cell wall synthesis; bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase 534999 glmU 3914305 glmU Staphylococcus aureus subsp. aureus USA300_FPR3757 bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase YP_493186.1 533647 D 451515 CDS YP_493187.1 87161531 3913205 535146..536111 1 NC_007793.1 catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP; ribose-phosphate pyrophosphokinase 536111 prs 3913205 prs Staphylococcus aureus subsp. aureus USA300_FPR3757 ribose-phosphate pyrophosphokinase YP_493187.1 535146 D 451515 CDS YP_493188.1 87162260 3913178 536261..536914 1 NC_007793.1 the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response; 50S ribosomal protein L25/general stress protein Ctc 536914 3913178 SAUSA300_0479 Staphylococcus aureus subsp. aureus USA300_FPR3757 50S ribosomal protein L25/general stress protein Ctc YP_493188.1 536261 D 451515 CDS YP_493189.1 87160087 3914920 537225..537797 1 NC_007793.1 Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase 537797 pth 3914920 pth Staphylococcus aureus subsp. aureus USA300_FPR3757 peptidyl-tRNA hydrolase YP_493189.1 537225 D 451515 CDS YP_493190.1 87160796 3914616 537797..541303 1 NC_007793.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF02559; match to protein family HMM PF03461; match to protein family HMM PF04851; match to protein family HMM TIGR00580; transcription-repair coupling factor 541303 mfd 3914616 mfd Staphylococcus aureus subsp. aureus USA300_FPR3757 transcription-repair coupling factor YP_493190.1 537797 D 451515 CDS YP_493191.1 87161203 3914914 541293..542819 1 NC_007793.1 identified by match to protein family HMM PF01943; polysaccharide biosynthesis protein 542819 3914914 SAUSA300_0482 Staphylococcus aureus subsp. aureus USA300_FPR3757 polysaccharide biosynthesis protein YP_493191.1 541293 D 451515 CDS YP_493192.1 87160529 3914009 542819..544012 1 NC_007793.1 identified by match to protein family HMM PF00590; match to protein family HMM PF03819; tetrapyrrole methylase family protein 544012 3914009 SAUSA300_0483 Staphylococcus aureus subsp. aureus USA300_FPR3757 tetrapyrrole methylase family protein YP_493192.1 542819 D 451515 CDS YP_493193.1 87161449 3914122 544009..544272 1 NC_007793.1 identified by match to protein family HMM PF01479; hypothetical protein 544272 3914122 SAUSA300_0484 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493193.1 544009 D 451515 CDS YP_493194.1 87160736 3913437 544290..544682 1 NC_007793.1 identified by match to protein family HMM PF04977; cell-division initiation protein 544682 3913437 SAUSA300_0485 Staphylococcus aureus subsp. aureus USA300_FPR3757 cell-division initiation protein YP_493194.1 544290 D 451515 CDS YP_493195.1 87160186 3913254 544787..545188 1 NC_007793.1 identified by match to protein family HMM PF00575; hypothetical protein 545188 3913254 SAUSA300_0486 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493195.1 544787 D 451515 CDS YP_493196.1 87161906 3912997 545368..546663 1 NC_007793.1 identified by match to protein family HMM PF01171; match to protein family HMM TIGR02432; match to protein family HMM TIGR02433; hypothetical protein 546663 3912997 SAUSA300_0487 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493196.1 545368 D 451515 CDS YP_493197.1 87161299 3914718 546656..547207 1 NC_007793.1 identified by match to protein family HMM PF00156; match to protein family HMM TIGR01203; hypoxanthine phosphoribosyltransferase 547207 hpt 3914718 hpt Staphylococcus aureus subsp. aureus USA300_FPR3757 hypoxanthine phosphoribosyltransferase YP_493197.1 546656 D 451515 CDS YP_493198.1 87161534 3914660 547464..549557 1 NC_007793.1 identified by match to protein family HMM PF00004; match to protein family HMM PF01434; match to protein family HMM PF06480; match to protein family HMM PF07728; match to protein family HMM TIGR01241; putative cell division protein FtsH 549557 3914660 SAUSA300_0489 Staphylococcus aureus subsp. aureus USA300_FPR3757 putative cell division protein FtsH YP_493198.1 547464 D 451515 CDS YP_493199.1 87161152 3914497 549786..550667 1 NC_007793.1 becomes active under oxidative stress; four conserved cysteines bind a zinc atom when they are in the reduced state and the enzyme is inactive; oxidative stress results in oxidized cysteines, release of zinc, and binding of Hsp33 to aggregation-prone proteins; forms dimers and higher order oligomers; Hsp33-like chaperonin 550667 hslO 3914497 hslO Staphylococcus aureus subsp. aureus USA300_FPR3757 Hsp33-like chaperonin YP_493199.1 549786 D 451515 CDS YP_493200.1 87160058 3912911 550846..551778 1 NC_007793.1 identified by match to protein family HMM PF00291; match to protein family HMM TIGR01136; match to protein family HMM TIGR01139; cysteine synthase A 551778 cysK 3912911 cysK Staphylococcus aureus subsp. aureus USA300_FPR3757 cysteine synthase A YP_493200.1 550846 D 451515 CDS YP_493201.1 87162280 3915320 551994..552797 1 NC_007793.1 identified by match to protein family HMM PF00809; match to protein family HMM TIGR01496; dihydropteroate synthase 552797 folP 3915320 folP Staphylococcus aureus subsp. aureus USA300_FPR3757 dihydropteroate synthase YP_493201.1 551994 D 451515 CDS YP_493202.1 87160176 3914528 552775..553140 1 NC_007793.1 identified by match to protein family HMM PF02152; match to protein family HMM TIGR00525; match to protein family HMM TIGR00526; dihydroneopterin aldolase 553140 folB 3914528 folB Staphylococcus aureus subsp. aureus USA300_FPR3757 dihydroneopterin aldolase YP_493202.1 552775 D 451515 CDS YP_493203.1 87162220 3913995 553137..553613 1 NC_007793.1 identified by match to protein family HMM PF01288; match to protein family HMM TIGR01498; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase 553613 folK 3913995 folK Staphylococcus aureus subsp. aureus USA300_FPR3757 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase YP_493203.1 553137 D 451515 CDS YP_493204.1 87162403 3913926 554007..554099 1 NC_007793.1 hypothetical protein 554099 3913926 SAUSA300_0495 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493204.1 554007 D 451515 CDS YP_493205.1 87161440 3914113 554152..555639 1 NC_007793.1 class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1; lysyl-tRNA synthetase 555639 lysS 3914113 lysS Staphylococcus aureus subsp. aureus USA300_FPR3757 lysyl-tRNA synthetase YP_493205.1 554152 D 451515 CDS YP_493206.1 87160548 3913503 complement(562046..563428) 1 NC_007793.1 identified by match to protein family HMM PF00392; transcriptional regulator, gntR family protein 563428 3913503 SAUSA300_0503 Staphylococcus aureus subsp. aureus USA300_FPR3757 transcriptional regulator, gntR family protein YP_493206.1 562046 R 451515 CDS YP_493207.1 87160909 3915160 563532..564419 1 NC_007793.1 with PdxT forms pyridoxal 5'-phosphate from glutamine, either ribose 5-phosphate or ribulose 5-phosphate, and either glyceraldehyde 3-phosphate or dihydroxyacetone phosphate; pyridoxal biosynthesis lyase PdxS 564419 3915160 SAUSA300_0504 Staphylococcus aureus subsp. aureus USA300_FPR3757 pyridoxal biosynthesis lyase PdxS YP_493207.1 563532 D 451515 CDS YP_493208.1 87160341 3915116 564423..564983 1 NC_007793.1 with PdxST is involved in the biosynthesis of pyridoxal 5'-phosphate; PdxT catalyzes the hydrolysis of glutamine to glutamate and ammonia; PdxS utilizes the ammonia to synthesize pyridoxal 5'-phosphate; glutamine amidotransferase subunit PdxT 564983 3915116 SAUSA300_0505 Staphylococcus aureus subsp. aureus USA300_FPR3757 glutamine amidotransferase subunit PdxT YP_493208.1 564423 D 451515 CDS YP_493209.1 87162350 3914199 complement(565191..566405) 1 NC_007793.1 identified by match to protein family HMM PF01773; match to protein family HMM PF07662; match to protein family HMM PF07670; pyrimidine nucleoside transport protein 566405 nupC 3914199 nupC Staphylococcus aureus subsp. aureus USA300_FPR3757 pyrimidine nucleoside transport protein YP_493209.1 565191 R 451515 CDS YP_493210.1 87161769 3913623 566563..567024 1 NC_007793.1 identified by match to protein family HMM PF05848; transcriptional regulator CtsR 567024 ctsR 3913623 ctsR Staphylococcus aureus subsp. aureus USA300_FPR3757 transcriptional regulator CtsR YP_493210.1 566563 D 451515 CDS YP_493211.1 87160592 3915211 567121..567609 1 NC_007793.1 identified by match to protein family HMM PF02151; hypothetical protein 567609 3915211 SAUSA300_0508 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493211.1 567121 D 451515 CDS YP_493212.1 87160038 3913359 567599..568606 1 NC_007793.1 identified by match to protein family HMM PF00217; ATP:guanido phosphotransferase 568606 3913359 SAUSA300_0509 Staphylococcus aureus subsp. aureus USA300_FPR3757 ATP:guanido phosphotransferase YP_493212.1 567599 D 451515 CDS YP_493213.1 87161024 3913940 568620..571076 1 NC_007793.1 identified by match to protein family HMM PF00004; match to protein family HMM PF02151; match to protein family HMM PF02861; match to protein family HMM PF07724; match to protein family HMM PF07728; endopeptidase 571076 clpC 3913940 clpC Staphylococcus aureus subsp. aureus USA300_FPR3757 endopeptidase YP_493213.1 568620 D 451515 CDS YP_493214.2 162138559 3914395 571561..572925 1 NC_007793.1 Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA 572925 radA 3914395 radA Staphylococcus aureus subsp. aureus USA300_FPR3757 DNA repair protein RadA YP_493214.2 571561 D 451515 CDS YP_493215.1 87160681 3915058 572968..574023 1 NC_007793.1 identified by match to protein family HMM PF01850; match to protein family HMM PF01938; PilT domain-containing protein 574023 3915058 SAUSA300_0512 Staphylococcus aureus subsp. aureus USA300_FPR3757 PilT domain-containing protein YP_493215.1 572968 D 451515 CDS YP_493216.1 87161223 3912798 574580..576034 1 NC_007793.1 Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase 576034 gltX 3912798 gltX Staphylococcus aureus subsp. aureus USA300_FPR3757 glutamyl-tRNA synthetase YP_493216.1 574580 D 451515 CDS YP_493217.1 87162172 3915203 576457..577104 1 NC_007793.1 identified by match to protein family HMM PF00132; match to protein family HMM TIGR01172; serine acetyltransferase 577104 cysE 3915203 cysE Staphylococcus aureus subsp. aureus USA300_FPR3757 serine acetyltransferase YP_493217.1 576457 D 451515 CDS YP_493218.1 87160084 3914917 577088..578488 1 NC_007793.1 catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase 578488 cysS 3914917 cysS Staphylococcus aureus subsp. aureus USA300_FPR3757 cysteinyl-tRNA synthetase YP_493218.1 577088 D 451515 CDS YP_493219.1 87161610 3913465 578481..578885 1 NC_007793.1 identified by match to protein family HMM PF00636; hypothetical protein 578885 3913465 SAUSA300_0516 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493219.1 578481 D 451515 CDS YP_493220.1 87162210 3914853 578893..579639 1 NC_007793.1 identified by match to protein family HMM PF00588; match to protein family HMM PF08032; match to protein family HMM TIGR00186; RNA methyltransferase 579639 3914853 SAUSA300_0517 Staphylococcus aureus subsp. aureus USA300_FPR3757 RNA methyltransferase YP_493220.1 578893 D 451515 CDS YP_493221.1 87160481 3913336 579639..580163 1 NC_007793.1 identified by match to protein family HMM PF05991; hypothetical protein 580163 3913336 SAUSA300_0518 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493221.1 579639 D 451515 CDS YP_493222.1 87161083 3914269 580244..580813 1 NC_007793.1 identified by match to protein family HMM PF04542; hypothetical protein 580813 3914269 SAUSA300_0519 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493222.1 580244 D 451515 CDS YP_493223.1 87161634 3913684 581127..581309 1 NC_007793.1 forms a complex with SecY and SecG; SecYEG forms a putative protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force; preprotein translocase subunit SecE 581309 secE 3913684 secE Staphylococcus aureus subsp. aureus USA300_FPR3757 preprotein translocase subunit SecE YP_493223.1 581127 D 451515 CDS YP_493224.1 87160422 3913140 581322..581870 1 NC_007793.1 identified by match to protein family HMM PF00467; match to protein family HMM PF02357; match to protein family HMM TIGR00922; transcription antitermination protein 581870 nusG 3913140 nusG Staphylococcus aureus subsp. aureus USA300_FPR3757 transcription antitermination protein YP_493224.1 581322 D 451515 CDS YP_493225.1 87161133 3913722 582051..582473 1 NC_007793.1 binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 582473 rplK 3913722 rplK Staphylococcus aureus subsp. aureus USA300_FPR3757 50S ribosomal protein L11 YP_493225.1 582051 D 451515 CDS YP_493226.1 87162295 3913604 582681..583373 1 NC_007793.1 in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 583373 rplA 3913604 rplA Staphylococcus aureus subsp. aureus USA300_FPR3757 50S ribosomal protein L1 YP_493226.1 582681 D 451515 CDS YP_493227.1 87160740 3913441 583645..584145 1 NC_007793.1 binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 584145 rplJ 3913441 rplJ Staphylococcus aureus subsp. aureus USA300_FPR3757 50S ribosomal protein L10 YP_493227.1 583645 D 451515 CDS YP_493228.1 87161455 3914128 584188..584556 1 NC_007793.1 present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; 50S ribosomal protein L7/L12 584556 rplL 3914128 rplL Staphylococcus aureus subsp. aureus USA300_FPR3757 50S ribosomal protein L7/L12 YP_493228.1 584188 D 451515 CDS YP_493229.1 87161944 3913701 584731..585339 1 NC_007793.1 identified by match to protein family HMM PF05175; methyltransferase small subunit 585339 3913701 SAUSA300_0526 Staphylococcus aureus subsp. aureus USA300_FPR3757 methyltransferase small subunit YP_493229.1 584731 D 451515 CDS YP_493230.2 162138570 3914836 585554..589105 1 NC_007793.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta 589105 rpoB 3914836 rpoB Staphylococcus aureus subsp. aureus USA300_FPR3757 DNA-directed RNA polymerase subunit beta YP_493230.2 585554 D 451515 CDS YP_493231.1 87161137 3913726 589269..592865 1 NC_007793.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' 592865 rpoC 3913726 rpoC Staphylococcus aureus subsp. aureus USA300_FPR3757 DNA-directed RNA polymerase subunit beta' YP_493231.1 589269 D 451515 CDS YP_493232.1 87161207 3912782 593002..593256 1 NC_007793.1 in Bacillus subtilis this non-essential protein associates with the ribosome; putative ribosomal protein L7Ae-like 593256 3912782 SAUSA300_0529 Staphylococcus aureus subsp. aureus USA300_FPR3757 putative ribosomal protein L7Ae-like YP_493232.1 593002 D 451515 CDS YP_493233.1 87162023 3914280 593354..593767 1 NC_007793.1 interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 593767 rpsL 3914280 rpsL Staphylococcus aureus subsp. aureus USA300_FPR3757 30S ribosomal protein S12 YP_493233.1 593354 D 451515 CDS YP_493234.1 87161189 3914900 <593924..594304 1 NC_007793.1 truncated; authenticated frameshift; identified by match to protein family HMM PF00177; match to protein family HMM TIGR01029; 30S ribosomal protein S7 594304 3914900 SAUSA300_0531 Staphylococcus aureus subsp. aureus USA300_FPR3757 30S ribosomal protein S7 YP_493234.1 <593924 D 451515 CDS YP_493235.1 87161750 3913895 594427..596508 1 NC_007793.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 596508 fusA 3913895 fusA Staphylococcus aureus subsp. aureus USA300_FPR3757 elongation factor G YP_493235.1 594427 D 451515 CDS YP_493236.1 87161022 3913938 596725..597909 1 NC_007793.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 597909 tuf 3913938 tuf Staphylococcus aureus subsp. aureus USA300_FPR3757 elongation factor Tu YP_493236.1 596725 D 451515 CDS YP_493237.1 87160247 3915138 complement(598191..599366) 1 NC_007793.1 identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891; amidohydrolase 599366 3915138 SAUSA300_0534 Staphylococcus aureus subsp. aureus USA300_FPR3757 amidohydrolase YP_493237.1 598191 R 451515 CDS YP_493238.1 87162079 3914622 599537..600724 1 NC_007793.1 catalyzes the formation of 2-amino-3-oxobutanoate from acetyl-CoA and glycine; 2-amino-3-ketobutyrate coenzyme A ligase 600724 3914622 SAUSA300_0535 Staphylococcus aureus subsp. aureus USA300_FPR3757 2-amino-3-ketobutyrate coenzyme A ligase YP_493238.1 599537 D 451515 CDS YP_493239.1 87161390 3914160 600990..601868 1 NC_007793.1 Hsp31 stabilizes early unfolding protein intermediates under severe heat stress; chaperone protein HchA 601868 3914160 SAUSA300_0536 Staphylococcus aureus subsp. aureus USA300_FPR3757 chaperone protein HchA YP_493239.1 600990 D 451515 CDS YP_493240.1 87160679 3915056 602028..603665 1 NC_007793.1 catalyzes the phosphorylation of ribulose to ribulose 5-phosphate; ribulokinase 603665 3915056 SAUSA300_0537 Staphylococcus aureus subsp. aureus USA300_FPR3757 ribulokinase YP_493240.1 602028 D 451515 CDS YP_493241.1 87159910 3914956 603879..604844 1 NC_007793.1 identified by match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF07993; NAD-dependent epimerase/dehydratase family protein 604844 3914956 SAUSA300_0538 Staphylococcus aureus subsp. aureus USA300_FPR3757 NAD-dependent epimerase/dehydratase family protein YP_493241.1 603879 D 451515 CDS YP_493242.1 87161544 3914670 605179..606255 1 NC_007793.1 catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; branched-chain amino acid aminotransferase 606255 ilvE 3914670 ilvE Staphylococcus aureus subsp. aureus USA300_FPR3757 branched-chain amino acid aminotransferase YP_493242.1 605179 D 451515 CDS YP_493243.1 87160137 3912990 606505..607188 1 NC_007793.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549; HAD family hydrolase 607188 3912990 SAUSA300_0540 Staphylococcus aureus subsp. aureus USA300_FPR3757 HAD family hydrolase YP_493243.1 606505 D 451515 CDS YP_493244.1 87161844 3913950 complement(607304..607966) 1 NC_007793.1 identified by match to protein family HMM PF01712; deoxynucleoside kinase family protein 607966 3913950 SAUSA300_0541 Staphylococcus aureus subsp. aureus USA300_FPR3757 deoxynucleoside kinase family protein YP_493244.1 607304 R 451515 CDS YP_493245.1 87161275 3915246 complement(607959..608576) 1 NC_007793.1 identified by match to protein family HMM PF01712; deoxynucleoside kinase family protein 608576 3915246 SAUSA300_0542 Staphylococcus aureus subsp. aureus USA300_FPR3757 deoxynucleoside kinase family protein YP_493245.1 607959 R 451515 CDS YP_493246.1 87160687 3914181 608643..609113 1 NC_007793.1 identified by match to protein family HMM PF00383; putative deaminase 609113 3914181 SAUSA300_0543 Staphylococcus aureus subsp. aureus USA300_FPR3757 putative deaminase YP_493246.1 608643 D 451515 CDS YP_493247.1 87160124 3912977 609260..610129 1 NC_007793.1 identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484; HAD superfamily hydrolase 610129 3912977 SAUSA300_0544 Staphylococcus aureus subsp. aureus USA300_FPR3757 HAD superfamily hydrolase YP_493247.1 609260 D 451515 CDS YP_493248.1 87161568 3915184 610150..610716 1 NC_007793.1 identified by match to protein family HMM PF02525; match to protein family HMM PF03358; hypothetical protein 610716 3915184 SAUSA300_0545 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493248.1 610150 D 451515 CDS YP_493249.1 87161104 3914310 611147..613990 1 NC_007793.1 identified by match to protein family HMM PF00746; match to protein family HMM PF04650; match to protein family HMM PF05738; match to protein family HMM TIGR01167; match to protein family HMM TIGR01168; sdrC protein 613990 sdrC 3914310 sdrC Staphylococcus aureus subsp. aureus USA300_FPR3757 sdrC protein YP_493249.1 611147 D 451515 CDS YP_493250.1 87160386 3912812 614357..618502 1 NC_007793.1 identified by match to protein family HMM PF00746; match to protein family HMM PF04650; match to protein family HMM PF05738; match to protein family HMM TIGR01167; match to protein family HMM TIGR01168; sdrD protein 618502 sdrD 3912812 sdrD Staphylococcus aureus subsp. aureus USA300_FPR3757 sdrD protein YP_493250.1 614357 D 451515 CDS YP_493251.1 87161922 3914582 618896..622360 1 NC_007793.1 identified by match to protein family HMM PF00746; match to protein family HMM PF04650; match to protein family HMM PF05738; match to protein family HMM TIGR01167; match to protein family HMM TIGR01168; sdrE protein 622360 sdrE 3914582 sdrE Staphylococcus aureus subsp. aureus USA300_FPR3757 sdrE protein YP_493251.1 618896 D 451515 CDS YP_493252.1 87161169 3914743 622479..623951 1 NC_007793.1 identified by match to protein family HMM PF00534; glycosyl transferase, group 1 family protein 623951 3914743 SAUSA300_0549 Staphylococcus aureus subsp. aureus USA300_FPR3757 glycosyl transferase, group 1 family protein YP_493252.1 622479 D 451515 CDS YP_493253.1 87161159 3914504 complement(624075..625565) 1 NC_007793.1 identified by match to protein family HMM PF00534; glycosyl transferase, group 1 family protein 625565 3914504 SAUSA300_0550 Staphylococcus aureus subsp. aureus USA300_FPR3757 glycosyl transferase, group 1 family protein YP_493253.1 624075 R 451515 CDS YP_493254.1 87160563 3913518 complement(625847..626725) 1 NC_007793.1 similar protein in Methanocaldococcus converts GTP to 7,8-dihydro-D-neopterin 2',3'-cyclic phosphate as the first step in methanopterin biosynthesis; putative GTP cyclohydrolase 626725 3913518 SAUSA300_0551 Staphylococcus aureus subsp. aureus USA300_FPR3757 putative GTP cyclohydrolase YP_493254.1 625847 R 451515 CDS YP_493255.1 87161250 3913859 complement(626738..627403) 1 NC_007793.1 identified by match to protein family HMM PF02585; hypothetical protein 627403 3913859 SAUSA300_0552 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493255.1 626738 R 451515 CDS YP_493256.1 87161688 3914453 complement(627417..627779) 1 NC_007793.1 hypothetical protein 627779 3914453 SAUSA300_0553 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493256.1 627417 R 451515 CDS YP_493257.1 87162390 3913912 628055..628813 1 NC_007793.1 identified by match to protein family HMM PF01182; glucosamine-6-phosphate isomerase 628813 3913912 SAUSA300_0554 Staphylococcus aureus subsp. aureus USA300_FPR3757 glucosamine-6-phosphate isomerase YP_493257.1 628055 D 451515 CDS YP_493258.1 87160968 3915363 628890..629522 1 NC_007793.1 identified by match to protein family HMM PF00215; putative hexulose-6-phosphate synthase 629522 3915363 SAUSA300_0555 Staphylococcus aureus subsp. aureus USA300_FPR3757 putative hexulose-6-phosphate synthase YP_493258.1 628890 D 451515 CDS YP_493259.2 162138560 3914231 629524..630072 1 NC_007793.1 identified by match to protein family HMM PF01380; SIS domain-containing protein 630072 3914231 SAUSA300_0556 Staphylococcus aureus subsp. aureus USA300_FPR3757 SIS domain-containing protein YP_493259.2 629524 D 451515 CDS YP_493260.1 87162321 3913455 630185..630832 1 NC_007793.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549; HAD family hydrolase 630832 3913455 SAUSA300_0557 Staphylococcus aureus subsp. aureus USA300_FPR3757 HAD family hydrolase YP_493260.1 630185 D 451515 CDS YP_493261.1 87160309 3914545 631334..632734 1 NC_007793.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690; putative proline/betaine transporter 632734 3914545 SAUSA300_0558 Staphylococcus aureus subsp. aureus USA300_FPR3757 putative proline/betaine transporter YP_493261.1 631334 D 451515 CDS YP_493262.1 87161303 3914799 633278..634654 1 NC_007793.1 identified by match to protein family HMM PF00501; putative substrate--CoA ligase 634654 3914799 SAUSA300_0559 Staphylococcus aureus subsp. aureus USA300_FPR3757 putative substrate--CoA ligase YP_493262.1 633278 D 451515 CDS YP_493263.1 87162207 3914850 634656..635795 1 NC_007793.1 identified by match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930; acetyl-CoA c-acetyltransferase 635795 vraB 3914850 vraB Staphylococcus aureus subsp. aureus USA300_FPR3757 acetyl-CoA c-acetyltransferase YP_493263.1 634656 D 451515 CDS YP_493264.1 87161899 3914410 635770..636135 1 NC_007793.1 hypothetical protein 636135 3914410 SAUSA300_0561 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493264.1 635770 D 451515 CDS YP_493265.1 87161331 3915302 complement(637282..638112) 1 NC_007793.1 identified by match to protein family HMM TIGR00097; phosphomethylpyrimidine kinase 638112 thiD 3915302 thiD Staphylococcus aureus subsp. aureus USA300_FPR3757 phosphomethylpyrimidine kinase YP_493265.1 637282 R 451515 CDS YP_493266.1 87160723 3913424 638296..638952 1 NC_007793.1 Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine; uracil-DNA glycosylase 638952 ung 3913424 ung Staphylococcus aureus subsp. aureus USA300_FPR3757 uracil-DNA glycosylase YP_493266.1 638296 D 451515 CDS YP_493267.1 87160160 3914512 638953..639333 1 NC_007793.1 hypothetical protein 639333 3914512 SAUSA300_0564 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493267.1 638953 D 451515 CDS YP_493268.1 87160151 3913121 639466..639834 1 NC_007793.1 identified by match to protein family HMM PF04241; hypothetical protein 639834 3913121 SAUSA300_0565 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493268.1 639466 D 451515 CDS YP_493269.1 87161530 3913204 639955..641439 1 NC_007793.1 identified by match to protein family HMM PF00324; amino acid permease 641439 3913204 SAUSA300_0566 Staphylococcus aureus subsp. aureus USA300_FPR3757 amino acid permease YP_493269.1 639955 D 451515 CDS YP_493270.1 87161013 3913579 complement(641581..642033) 1 NC_007793.1 hypothetical protein 642033 3913579 SAUSA300_0567 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493270.1 641581 R 451515 CDS YP_493271.1 87160360 3913234 complement(642046..642696) 1 NC_007793.1 identified by match to protein family HMM PF06738; hypothetical protein 642696 3913234 SAUSA300_0568 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493271.1 642046 R 451515 CDS YP_493272.1 87160502 3915093 complement(643359..644111) 1 NC_007793.1 identified by match to protein family HMM PF06778; putative heme peroxidase 644111 3915093 SAUSA300_0569 Staphylococcus aureus subsp. aureus USA300_FPR3757 putative heme peroxidase YP_493272.1 643359 R 451515 CDS YP_493273.1 87160940 3913780 644279..645265 1 NC_007793.1 in Salmonella this enzyme is required for ethanolamine catabolism; has higher affinity for CoA than Pta; phosphotransacetylase 645265 eutD 3913780 eutD Staphylococcus aureus subsp. aureus USA300_FPR3757 phosphotransacetylase YP_493273.1 644279 D 451515 CDS YP_493274.1 87161335 3915306 645340..646104 1 NC_007793.1 lipoate-protein ligase A family protein 646104 3915306 SAUSA300_0571 Staphylococcus aureus subsp. aureus USA300_FPR3757 lipoate-protein ligase A family protein YP_493274.1 645340 D 451515 CDS YP_493275.1 87161574 3913643 646691..647611 1 NC_007793.1 identified by match to protein family HMM PF00288; match to protein family HMM TIGR00549; mevalonate kinase 647611 mvk 3913643 mvk Staphylococcus aureus subsp. aureus USA300_FPR3757 mevalonate kinase YP_493275.1 646691 D 451515 CDS YP_493276.1 87162286 3915326 647616..648599 1 NC_007793.1 identified by match to protein family HMM PF00288; match to protein family HMM TIGR01240; mevalonate diphosphate decarboxylase 648599 mvaD 3915326 mvaD Staphylococcus aureus subsp. aureus USA300_FPR3757 mevalonate diphosphate decarboxylase YP_493276.1 647616 D 451515 CDS YP_493277.1 87160430 3913148 648612..649688 1 NC_007793.1 identified by match to protein family HMM PF00288; match to protein family HMM TIGR01220; phosphomevalonate kinase 649688 3913148 SAUSA300_0574 Staphylococcus aureus subsp. aureus USA300_FPR3757 phosphomevalonate kinase YP_493277.1 648612 D 451515 CDS YP_493278.1 87161735 3913021 649865..650206 1 NC_007793.1 hypothetical protein 650206 3913021 SAUSA300_0575 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493278.1 649865 D 451515 CDS YP_493279.1 87162420 3915267 complement(650258..651580) 1 NC_007793.1 identified by match to protein family HMM PF00070; match to protein family HMM PF02852; match to protein family HMM PF07992; putative pyridine nucleotide-disulfide oxidoreductase 651580 3915267 SAUSA300_0576 Staphylococcus aureus subsp. aureus USA300_FPR3757 putative pyridine nucleotide-disulfide oxidoreductase YP_493279.1 650258 R 451515 CDS YP_493280.1 87159993 3914421 complement(651567..651983) 1 NC_007793.1 identified by match to protein family HMM PF02082; hypothetical protein 651983 3914421 SAUSA300_0577 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493280.1 651567 R 451515 CDS YP_493281.1 87160714 3912829 652065..652166 1 NC_007793.1 hypothetical protein 652166 3912829 SAUSA300_0578 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493281.1 652065 D 451515 CDS YP_493282.1 87160725 3913426 652632..654041 1 NC_007793.1 hypothetical protein 654041 3913426 SAUSA300_0579 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493282.1 652632 D 451515 CDS YP_493283.1 87160240 3915131 654045..654671 1 NC_007793.1 identified by match to protein family HMM PF04276; match to protein family HMM TIGR01218; hypothetical protein 654671 3915131 SAUSA300_0580 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493283.1 654045 D 451515 CDS YP_493284.1 87160536 3914016 654797..655438 1 NC_007793.1 identified by match to protein family HMM PF04276; match to protein family HMM TIGR01218; hypothetical protein 655438 3914016 SAUSA300_0581 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493284.1 654797 D 451515 CDS YP_493285.1 87160021 3912932 655598..656143 1 NC_007793.1 identified by match to protein family HMM PF04276; match to protein family HMM TIGR01218; hypothetical protein 656143 3912932 SAUSA300_0582 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493285.1 655598 D 451515 CDS YP_493286.1 87162336 3913820 657043..657663 1 NC_007793.1 identified by match to protein family HMM PF04276; match to protein family HMM TIGR01218; hypothetical protein 657663 3913820 SAUSA300_0583 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493286.1 657043 D 451515 CDS YP_493287.1 87161795 3914038 657794..658435 1 NC_007793.1 identified by match to protein family HMM PF04276; match to protein family HMM TIGR01218; hypothetical protein 658435 3914038 SAUSA300_0584 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493287.1 657794 D 451515 CDS YP_493288.1 87160509 3914721 659564..660193 1 NC_007793.1 identified by match to protein family HMM PF04276; match to protein family HMM TIGR01218; hypothetical protein 660193 3914721 SAUSA300_0585 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493288.1 659564 D 451515 CDS YP_493289.1 87162192 3913889 660389..660958 1 NC_007793.1 identified by match to protein family HMM PF04276; match to protein family HMM TIGR01218; hypothetical protein 660958 3913889 SAUSA300_0586 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493289.1 660389 D 451515 CDS YP_493290.1 87162008 3915379 660995..661630 1 NC_007793.1 identified by match to protein family HMM PF04276; match to protein family HMM TIGR01218; hypothetical protein 661630 3915379 SAUSA300_0587 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493290.1 660995 D 451515 CDS YP_493291.1 87161437 3914086 661865..662491 1 NC_007793.1 identified by match to protein family HMM PF04276; match to protein family HMM TIGR01218; hypothetical protein 662491 3914086 SAUSA300_0588 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493291.1 661865 D 451515 CDS YP_493292.1 87161057 3912767 662761..663699 1 NC_007793.1 identified by match to protein family HMM PF00248; aldo/keto reductase family protein 663699 3912767 SAUSA300_0589 Staphylococcus aureus subsp. aureus USA300_FPR3757 aldo/keto reductase family protein YP_493292.1 662761 D 451515 CDS YP_493293.1 87160074 3913298 663910..664446 1 NC_007793.1 identified by match to protein family HMM PF03358; hypothetical protein 664446 3913298 SAUSA300_0590 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493293.1 663910 D 451515 CDS YP_493294.1 87160586 3915012 664615..665091 1 NC_007793.1 identified by match to protein family HMM PF00583; acetyltransferase 665091 3915012 SAUSA300_0591 Staphylococcus aureus subsp. aureus USA300_FPR3757 acetyltransferase YP_493294.1 664615 D 451515 CDS YP_493295.1 87159990 3914418 665131..666426 1 NC_007793.1 identified by match to protein family HMM PF01966; hypothetical protein 666426 3914418 SAUSA300_0592 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493295.1 665131 D 451515 CDS YP_493296.1 87162054 3914330 666454..666975 1 NC_007793.1 hypothetical protein 666975 3914330 SAUSA300_0593 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493296.1 666454 D 451515 CDS YP_493297.1 87161490 3914232 667474..668484 1 NC_007793.1 similar to zinc-dependent eukaryotic ADH enzymes and distinct from fermentative ADHs; alcohol dehydrogenase 668484 adh 3914232 adh Staphylococcus aureus subsp. aureus USA300_FPR3757 alcohol dehydrogenase YP_493297.1 667474 D 451515 CDS YP_493298.1 87160877 3912954 668792..669175 1 NC_007793.1 hypothetical protein 669175 3912954 SAUSA300_0595 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493298.1 668792 D 451515 CDS YP_493299.1 87162053 3914329 669172..670833 1 NC_007793.1 catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase 670833 argS 3914329 argS Staphylococcus aureus subsp. aureus USA300_FPR3757 arginyl-tRNA synthetase YP_493299.1 669172 D 451515 CDS YP_493300.1 87162324 3913458 671221..671856 1 NC_007793.1 putative endonuclease III 671856 3913458 SAUSA300_0597 Staphylococcus aureus subsp. aureus USA300_FPR3757 putative endonuclease III YP_493300.1 671221 D 451515 CDS YP_493301.1 87161764 3913909 672295..673122 1 NC_007793.1 identified by match to protein family HMM PF01497; putative iron compound ABC transporter iron compound-binding protein 673122 3913909 SAUSA300_0598 Staphylococcus aureus subsp. aureus USA300_FPR3757 putative iron compound ABC transporter iron compound-binding protein YP_493301.1 672295 D 451515 CDS YP_493302.1 87161680 3914445 673270..674220 1 NC_007793.1 identified by match to protein family HMM PF01032; iron compound ABC transporter permease 674220 3914445 SAUSA300_0599 Staphylococcus aureus subsp. aureus USA300_FPR3757 iron compound ABC transporter permease YP_493302.1 673270 D 451515 CDS YP_493303.1 87161190 3914901 674275..674994 1 NC_007793.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; match to protein family HMM TIGR01549; HAD superfamily hydrolase 674994 3914901 SAUSA300_0600 Staphylococcus aureus subsp. aureus USA300_FPR3757 HAD superfamily hydrolase YP_493303.1 674275 D 451515 CDS YP_493304.1 87161066 3912776 674978..675778 1 NC_007793.1 identified by match to protein family HMM PF00561; alpha/beta fold family hydrolase 675778 3912776 SAUSA300_0601 Staphylococcus aureus subsp. aureus USA300_FPR3757 alpha/beta fold family hydrolase YP_493304.1 674978 D 451515 CDS YP_493305.1 87160907 3915158 675914..676420 1 NC_007793.1 hypothetical protein 676420 3915158 SAUSA300_0602 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493305.1 675914 D 451515 CDS YP_493306.1 87160812 3913044 676582..677298 1 NC_007793.1 hypothetical protein 677298 3913044 SAUSA300_0603 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493306.1 676582 D 451515 CDS YP_493307.1 87160321 3915396 677467..678255 1 NC_007793.1 identified by match to protein family HMM PF00561; alpha/beta fold family hydrolase 678255 3915396 SAUSA300_0604 Staphylococcus aureus subsp. aureus USA300_FPR3757 alpha/beta fold family hydrolase YP_493307.1 677467 D 451515 CDS YP_493308.1 87162371 3913524 complement(678506..678880) 1 NC_007793.1 identified by match to protein family HMM TIGR01889; accessory regulator A 678880 sarA 3913524 sarA Staphylococcus aureus subsp. aureus USA300_FPR3757 accessory regulator A YP_493308.1 678506 R 451515 CDS YP_493309.1 87160612 3913273 complement(679828..680721) 1 NC_007793.1 identified by match to protein family HMM PF04657; hypothetical protein 680721 3913273 SAUSA300_0606 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493309.1 679828 R 451515 CDS YP_493310.1 87160027 3913348 complement(680952..681176) 1 NC_007793.1 hypothetical protein 681176 3913348 SAUSA300_0607 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493310.1 680952 R 451515 CDS YP_493311.1 87162337 3913821 complement(681193..681396) 1 NC_007793.1 hypothetical protein 681396 3913821 SAUSA300_0608 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493311.1 681193 R 451515 CDS YP_493312.1 87161780 3913634 681555..682115 1 NC_007793.1 identified by match to protein family HMM PF00589; phage integrase family protein 682115 3913634 SAUSA300_0609 Staphylococcus aureus subsp. aureus USA300_FPR3757 phage integrase family protein YP_493312.1 681555 D 451515 CDS YP_493313.1 87160720 3912835 682134..684536 1 NC_007793.1 subunit A of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; putative monovalent cation/H+ antiporter subunit A 684536 3912835 SAUSA300_0610 Staphylococcus aureus subsp. aureus USA300_FPR3757 putative monovalent cation/H+ antiporter subunit A YP_493313.1 682134 D 451515 CDS YP_493314.1 87159996 3914424 684523..684948 1 NC_007793.1 subunit B of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; putative monovalent cation/H+ antiporter subunit B 684948 3914424 SAUSA300_0611 Staphylococcus aureus subsp. aureus USA300_FPR3757 putative monovalent cation/H+ antiporter subunit B YP_493314.1 684523 D 451515 CDS YP_493315.1 87161834 3913805 684945..685289 1 NC_007793.1 subunit C of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; putative monovalent cation/H+ antiporter subunit C 685289 3913805 SAUSA300_0612 Staphylococcus aureus subsp. aureus USA300_FPR3757 putative monovalent cation/H+ antiporter subunit C YP_493315.1 684945 D 451515 CDS YP_493316.1 87161251 3913860 685279..686775 1 NC_007793.1 subunit D of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; contains an oxidoreductase domain; catalyzes the transfer of electrons from NADH to ubiquinone; in S. meliloti it is known to be involved specifically with K+ transport; putative monovalent cation/H+ antiporter subunit D 686775 3913860 SAUSA300_0613 Staphylococcus aureus subsp. aureus USA300_FPR3757 putative monovalent cation/H+ antiporter subunit D YP_493316.1 685279 D 451515 CDS YP_493317.1 87160699 3914193 686776..687258 1 NC_007793.1 subunit E of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved specifically with K+ transport; putative monovalent cation/H+ antiporter subunit E 687258 3914193 SAUSA300_0614 Staphylococcus aureus subsp. aureus USA300_FPR3757 putative monovalent cation/H+ antiporter subunit E YP_493317.1 686776 D 451515 CDS YP_493318.1 87160193 3913261 687255..687557 1 NC_007793.1 subunit F of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; putative monovalent cation/H+ antiporter subunit F 687557 3913261 SAUSA300_0615 Staphylococcus aureus subsp. aureus USA300_FPR3757 putative monovalent cation/H+ antiporter subunit F YP_493318.1 687255 D 451515 CDS YP_493319.1 87160319 3915394 687532..687969 1 NC_007793.1 subunit G of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; putative monovalent cation/H+ antiporter subunit G 687969 3915394 SAUSA300_0616 Staphylococcus aureus subsp. aureus USA300_FPR3757 putative monovalent cation/H+ antiporter subunit G YP_493319.1 687532 D 451515 CDS YP_493320.1 87162333 3913817 688348..690351 1 NC_007793.1 identified by match to protein family HMM PF00999; Na+/H+ antiporter 690351 3913817 SAUSA300_0617 Staphylococcus aureus subsp. aureus USA300_FPR3757 Na+/H+ antiporter YP_493320.1 688348 D 451515 CDS YP_493321.1 87161864 3914552 complement(691511..692440) 1 NC_007793.1 identified by match to protein family HMM PF01297; ABC transporter substrate-binding protein 692440 3914552 SAUSA300_0618 Staphylococcus aureus subsp. aureus USA300_FPR3757 ABC transporter substrate-binding protein YP_493321.1 691511 R 451515 CDS YP_493322.1 87161330 3915301 complement(692437..693273) 1 NC_007793.1 identified by match to protein family HMM PF00950; ABC transporter permease 693273 3915301 SAUSA300_0619 Staphylococcus aureus subsp. aureus USA300_FPR3757 ABC transporter permease YP_493322.1 692437 R 451515 CDS YP_493323.1 87161090 3914296 complement(693267..694010) 1 NC_007793.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 694010 3914296 SAUSA300_0620 Staphylococcus aureus subsp. aureus USA300_FPR3757 ABC transporter ATP-binding protein YP_493323.1 693267 R 451515 CDS YP_493324.1 87161674 3914439 694132..694776 1 NC_007793.1 identified by match to protein family HMM PF01325; match to protein family HMM PF02742; match to protein family HMM PF04023; iron-dependent repressor 694776 3914439 SAUSA300_0621 Staphylococcus aureus subsp. aureus USA300_FPR3757 iron-dependent repressor YP_493324.1 694132 D 451515 CDS YP_493325.1 87160521 3914733 complement(694856..695608) 1 NC_007793.1 hypothetical protein 695608 3914733 SAUSA300_0622 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493325.1 694856 R 451515 CDS YP_493326.1 87160942 3913782 695844..696608 1 NC_007793.1 identified by match to protein family HMM PF03808; match to protein family HMM TIGR00696; teichoic acid biosynthesis protein 696608 tagA 3913782 tagA Staphylococcus aureus subsp. aureus USA300_FPR3757 teichoic acid biosynthesis protein YP_493326.1 695844 D 451515 CDS YP_493327.1 87161532 3913206 complement(696669..697463) 1 NC_007793.1 with TagG is involved in the export of teichoic acids; teichoic acids export protein ATP-binding subunit 697463 tagH 3913206 tagH Staphylococcus aureus subsp. aureus USA300_FPR3757 teichoic acids export protein ATP-binding subunit YP_493327.1 696669 R 451515 CDS YP_493328.1 87162070 3914249 697810..698622 1 NC_007793.1 identified by match to protein family HMM PF01061; teichoic acid ABC transporter protein 698622 tagG 3914249 tagG Staphylococcus aureus subsp. aureus USA300_FPR3757 teichoic acid ABC transporter protein YP_493328.1 697810 D 451515 CDS YP_493329.1 87161866 3914554 698721..699824 1 NC_007793.1 identified by match to protein family HMM PF04464; teichoic acid biosynthesis protein B 699824 tagB 3914554 tagB Staphylococcus aureus subsp. aureus USA300_FPR3757 teichoic acid biosynthesis protein B YP_493329.1 698721 D 451515 CDS YP_493330.1 87160034 3913355 699821..700882 1 NC_007793.1 identified by match to protein family HMM PF00535; teichoic acid biosynthesis protein X 700882 tagX 3913355 tagX Staphylococcus aureus subsp. aureus USA300_FPR3757 teichoic acid biosynthesis protein X YP_493330.1 699821 D 451515 CDS YP_493331.1 87160374 3912800 700945..701343 1 NC_007793.1 identified by match to protein family HMM PF01467; match to protein family HMM TIGR00125; match to protein family HMM TIGR01518; glycerol-3-phosphate cytidylyltransferase 701343 3912800 SAUSA300_0628 Staphylococcus aureus subsp. aureus USA300_FPR3757 glycerol-3-phosphate cytidylyltransferase YP_493331.1 700945 D 451515 CDS YP_493332.1 87161157 3914502 complement(701460..702755) 1 NC_007793.1 identified by match to protein family HMM PF00144; match to protein family HMM PF00768; penicillin-binding protein 4 702755 pbp4 3914502 pbp4 Staphylococcus aureus subsp. aureus USA300_FPR3757 penicillin-binding protein 4 YP_493332.1 701460 R 451515 CDS YP_493333.1 87162320 3913454 703176..704903 1 NC_007793.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664; ABC transporter ATP-binding protein 704903 3913454 SAUSA300_0630 Staphylococcus aureus subsp. aureus USA300_FPR3757 ABC transporter ATP-binding protein YP_493333.1 703176 D 451515 CDS YP_493334.1 87160308 3914544 705262..706491 1 NC_007793.1 identified by match to protein family HMM PF01773; match to protein family HMM PF07662; putative nucleoside transporter 706491 3914544 SAUSA300_0631 Staphylococcus aureus subsp. aureus USA300_FPR3757 putative nucleoside transporter YP_493334.1 705262 D 451515 CDS YP_493335.1 87161891 3914402 707016..707849 1 NC_007793.1 identified by match to protein family HMM PF02588; hypothetical protein 707849 3914402 SAUSA300_0632 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493335.1 707016 D 451515 CDS YP_493336.1 87160200 3913073 708131..708928 1 NC_007793.1 identified by match to protein family HMM PF00005; ferrichrome transport ATP-binding protein fhuA 708928 fhuA 3913073 fhuA Staphylococcus aureus subsp. aureus USA300_FPR3757 ferrichrome transport ATP-binding protein fhuA YP_493336.1 708131 D 451515 CDS YP_493337.1 87160794 3914614 708964..709968 1 NC_007793.1 identified by match to protein family HMM PF01032; ferrichrome transport permease fhuB 709968 fhuB 3914614 fhuB Staphylococcus aureus subsp. aureus USA300_FPR3757 ferrichrome transport permease fhuB YP_493337.1 708964 D 451515 CDS YP_493338.1 87161191 3914902 709965..710981 1 NC_007793.1 identified by match to protein family HMM PF01032; ferrichrome transport permease fhuG 710981 fhuG 3914902 fhuG Staphylococcus aureus subsp. aureus USA300_FPR3757 ferrichrome transport permease fhuG YP_493338.1 709965 D 451515 CDS YP_493339.1 87160342 3915117 711215..712183 1 NC_007793.1 with DhaL and DhaM forms dihydroxyacetone kinase, which is responsible for phosphorylating dihydroxyacetone; DhaK is the dihydroxyacetone binding subunit of the dihydroxyacetone kinase; dihydroxyacetone kinase subunit DhaK 712183 3915117 SAUSA300_0636 Staphylococcus aureus subsp. aureus USA300_FPR3757 dihydroxyacetone kinase subunit DhaK YP_493339.1 711215 D 451515 CDS YP_493340.1 87160759 3913422 712225..712809 1 NC_007793.1 identified by match to protein family HMM PF02734; match to protein family HMM TIGR02365; dihydroxyacetone kinase subunit DhaL 712809 3913422 SAUSA300_0637 Staphylococcus aureus subsp. aureus USA300_FPR3757 dihydroxyacetone kinase subunit DhaL YP_493340.1 712225 D 451515 CDS YP_493341.1 87161507 3913220 712802..713164 1 NC_007793.1 identified by match to protein family HMM PF03610; match to protein family HMM TIGR02364; phosphotransferase mannnose-specific family component IIA 713164 3913220 SAUSA300_0638 Staphylococcus aureus subsp. aureus USA300_FPR3757 phosphotransferase mannnose-specific family component IIA YP_493341.1 712802 D 451515 CDS YP_493342.1 87162367 3914216 713280..713777 1 NC_007793.1 hypothetical protein 713777 3914216 SAUSA300_0639 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493342.1 713280 D 451515 CDS YP_493343.1 87161109 3914335 714233..715300 1 NC_007793.1 identified by match to protein family HMM PF05525; hypothetical protein 715300 3914335 SAUSA300_0640 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493343.1 714233 D 451515 CDS YP_493344.1 87161833 3913804 715451..716494 1 NC_007793.1 identified by match to protein family HMM PF07859; putative lipase/esterase 716494 3913804 SAUSA300_0641 Staphylococcus aureus subsp. aureus USA300_FPR3757 putative lipase/esterase YP_493344.1 715451 D 451515 CDS YP_493345.1 87160114 3913378 716823..717251 1 NC_007793.1 hypothetical protein 717251 3913378 SAUSA300_0642 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493345.1 716823 D 451515 CDS YP_493346.1 87161993 3914890 complement(717460..717966) 1 NC_007793.1 identified by match to protein family HMM PF00583; acetyltransferase 717966 3914890 SAUSA300_0643 Staphylococcus aureus subsp. aureus USA300_FPR3757 acetyltransferase YP_493346.1 717460 R 451515 CDS YP_493347.1 87161695 3914460 718079..719002 1 NC_007793.1 hypothetical protein 719002 3914460 SAUSA300_0644 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493347.1 718079 D 451515 CDS YP_493348.1 87160864 3914136 719018..719692 1 NC_007793.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator 719692 3914136 SAUSA300_0645 Staphylococcus aureus subsp. aureus USA300_FPR3757 DNA-binding response regulator YP_493348.1 719018 D 451515 CDS YP_493349.1 87161852 3913958 719685..720725 1 NC_007793.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518; sensor histidine kinase 720725 3913958 SAUSA300_0646 Staphylococcus aureus subsp. aureus USA300_FPR3757 sensor histidine kinase YP_493349.1 719685 D 451515 CDS YP_493350.1 87162381 3913534 720869..721630 1 NC_007793.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 721630 3913534 SAUSA300_0647 Staphylococcus aureus subsp. aureus USA300_FPR3757 ABC transporter ATP-binding protein YP_493350.1 720869 D 451515 CDS YP_493351.1 87160816 3913048 721620..723509 1 NC_007793.1 ABC transporter permease 723509 3913048 SAUSA300_0648 Staphylococcus aureus subsp. aureus USA300_FPR3757 ABC transporter permease YP_493351.1 721620 D 451515 CDS YP_493352.1 87160111 3913374 724234..724851 1 NC_007793.1 identified by match to protein family HMM PF01865; hypothetical protein 724851 3913374 SAUSA300_0649 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493352.1 724234 D 451515 CDS YP_493353.1 87161402 3914090 724867..725874 1 NC_007793.1 identified by match to protein family HMM PF01384; phosphate transporter family protein 725874 3914090 SAUSA300_0650 Staphylococcus aureus subsp. aureus USA300_FPR3757 phosphate transporter family protein YP_493353.1 724867 D 451515 CDS YP_493354.1 87160708 3912823 complement(726462..727259) 1 NC_007793.1 identified by match to protein family HMM PF01476; match to protein family HMM PF05257; CHAP domain-contain protein 727259 3912823 SAUSA300_0651 Staphylococcus aureus subsp. aureus USA300_FPR3757 CHAP domain-contain protein YP_493354.1 726462 R 451515 CDS YP_493355.1 87159997 3914425 727620..728264 1 NC_007793.1 hypothetical protein 728264 3914425 SAUSA300_0652 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493355.1 727620 D 451515 CDS YP_493356.1 87161850 3913956 728961..730940 1 NC_007793.1 two frameshifts, both authenticated; identified by match to protein family HMM PF00165; AraC family transcriptional regulator 730940 3913956 SAUSA300_0653 Staphylococcus aureus subsp. aureus USA300_FPR3757 AraC family transcriptional regulator YP_493356.1 728961 D 451515 CDS YP_493357.1 87161127 3914353 731190..731615 1 NC_007793.1 identified by match to protein family HMM TIGR01889; hypothetical protein 731615 sarX 3914353 sarX Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493357.1 731190 D 451515 CDS YP_493358.1 87160409 3912854 731805..732521 1 NC_007793.1 identified by match to protein family HMM PF01709; match to protein family HMM TIGR01033; hypothetical protein 732521 3912854 SAUSA300_0655 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493358.1 731805 D 451515 CDS YP_493359.1 87161069 3912779 732521..732994 1 NC_007793.1 identified by match to protein family HMM PF06172; hypothetical protein 732994 3912779 SAUSA300_0656 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493359.1 732521 D 451515 CDS YP_493360.1 87160467 3913068 733347..733991 1 NC_007793.1 identified by match to protein family HMM PF04167; hypothetical protein 733991 3913068 SAUSA300_0657 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493360.1 733347 D 451515 CDS YP_493361.1 87162157 3915188 734107..734973 1 NC_007793.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator 734973 3915188 SAUSA300_0658 Staphylococcus aureus subsp. aureus USA300_FPR3757 LysR family transcriptional regulator YP_493361.1 734107 D 451515 CDS YP_493362.1 87161612 3913467 735243..736463 1 NC_007793.1 identified by match to protein family HMM PF07690; sugar efflux transporter 736463 3913467 SAUSA300_0659 Staphylococcus aureus subsp. aureus USA300_FPR3757 sugar efflux transporter YP_493362.1 735243 D 451515 CDS YP_493363.1 87161811 3914647 736460..736948 1 NC_007793.1 identified by match to protein family HMM PF04306; hypothetical protein 736948 3914647 SAUSA300_0660 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493363.1 736460 D 451515 CDS YP_493364.1 87159966 3914818 complement(737047..737736) 1 NC_007793.1 hypothetical protein 737736 3914818 SAUSA300_0661 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493364.1 737047 R 451515 CDS YP_493365.1 87160730 3913431 737863..738306 1 NC_007793.1 identified by match to protein family HMM PF00583; acetyltransferase 738306 3913431 SAUSA300_0662 Staphylococcus aureus subsp. aureus USA300_FPR3757 acetyltransferase YP_493365.1 737863 D 451515 CDS YP_493366.1 87161290 3914709 738373..738768 1 NC_007793.1 hypothetical protein 738768 3914709 SAUSA300_0663 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493366.1 738373 D 451515 CDS YP_493367.1 87162221 3913996 738906..739205 1 NC_007793.1 hypothetical protein 739205 3913996 SAUSA300_0664 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493367.1 738906 D 451515 CDS YP_493368.1 87160938 3913778 739285..739827 1 NC_007793.1 identified by match to protein family HMM PF00583; acetyltransferase 739827 3913778 SAUSA300_0665 Staphylococcus aureus subsp. aureus USA300_FPR3757 acetyltransferase YP_493368.1 739285 D 451515 CDS YP_493369.1 87161045 3912890 complement(739923..740489) 1 NC_007793.1 identified by match to protein family HMM PF03641; match to protein family HMM TIGR00730; hypothetical protein 740489 3912890 SAUSA300_0666 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493369.1 739923 R 451515 CDS YP_493370.1 87161585 3913654 complement(740491..740949) 1 NC_007793.1 identified by match to protein family HMM PF02639; hypothetical protein 740949 3913654 SAUSA300_0667 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493370.1 740491 R 451515 CDS YP_493371.1 87161197 3914908 complement(740952..741635) 1 NC_007793.1 hypothetical protein 741635 3914908 SAUSA300_0668 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493371.1 740952 R 451515 CDS YP_493372.1 87160476 3913331 complement(741807..742682) 1 NC_007793.1 BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell; undecaprenyl pyrophosphate phosphatase 742682 3913331 SAUSA300_0669 Staphylococcus aureus subsp. aureus USA300_FPR3757 undecaprenyl pyrophosphate phosphatase YP_493372.1 741807 R 451515 CDS YP_493373.1 87160765 3913740 742895..744526 1 NC_007793.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664; ABC transporter ATP-binding protein 744526 3913740 SAUSA300_0670 Staphylococcus aureus subsp. aureus USA300_FPR3757 ABC transporter ATP-binding protein YP_493373.1 742895 D 451515 CDS YP_493374.1 87161470 3914061 744523..746196 1 NC_007793.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 746196 3914061 SAUSA300_0671 Staphylococcus aureus subsp. aureus USA300_FPR3757 ABC transporter ATP-binding protein YP_493374.1 744523 D 451515 CDS YP_493375.1 87159899 3914945 complement(746323..746766) 1 NC_007793.1 identified by match to protein family HMM PF01047; MarR family transcriptional regulator 746766 3914945 SAUSA300_0672 Staphylococcus aureus subsp. aureus USA300_FPR3757 MarR family transcriptional regulator YP_493375.1 746323 R 451515 CDS YP_493376.1 87160770 3913745 746993..747919 1 NC_007793.1 identified by match to protein family HMM PF02492; match to protein family HMM PF07683; cobalamin synthesis protein/P47K family protein 747919 3913745 SAUSA300_0673 Staphylococcus aureus subsp. aureus USA300_FPR3757 cobalamin synthesis protein/P47K family protein YP_493376.1 746993 D 451515 CDS YP_493377.1 87161787 3914030 748022..748930 1 NC_007793.1 identified by match to protein family HMM PF00248; aldo/keto reductase family oxidoreductase 748930 3914030 SAUSA300_0674 Staphylococcus aureus subsp. aureus USA300_FPR3757 aldo/keto reductase family oxidoreductase YP_493377.1 748022 D 451515 CDS YP_493378.1 87161921 3914581 748965..749252 1 NC_007793.1 hypothetical protein 749252 3914581 SAUSA300_0675 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493378.1 748965 D 451515 CDS YP_493379.1 87160917 3914355 749535..751088 1 NC_007793.1 identified by match to protein family HMM PF00939; match to protein family HMM PF03600; match to protein family HMM TIGR00785; anion transporter family protein 751088 3914355 SAUSA300_0676 Staphylococcus aureus subsp. aureus USA300_FPR3757 anion transporter family protein YP_493379.1 749535 D 451515 CDS YP_493380.1 87161809 3914645 751174..752547 1 NC_007793.1 identified by match to protein family HMM PF03441; putative deoxyribodipyrimidine photolyase 752547 3914645 SAUSA300_0677 Staphylococcus aureus subsp. aureus USA300_FPR3757 putative deoxyribodipyrimidine photolyase YP_493380.1 751174 D 451515 CDS YP_493381.1 87161469 3914060 complement(752983..753600) 1 NC_007793.1 identified by match to protein family HMM PF07099; hypothetical protein 753600 3914060 SAUSA300_0678 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493381.1 752983 R 451515 CDS YP_493382.1 87162052 3914328 complement(753786..754208) 1 NC_007793.1 identified by match to protein family HMM PF03479; hypothetical protein 754208 3914328 SAUSA300_0679 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493382.1 753786 R 451515 CDS YP_493383.1 87161112 3914338 754417..755583 1 NC_007793.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00880; multi drug resistance protein 755583 norA 3914338 norA Staphylococcus aureus subsp. aureus USA300_FPR3757 multi drug resistance protein YP_493383.1 754417 D 451515 CDS YP_493384.1 87160379 3912805 755876..756328 1 NC_007793.1 hypothetical protein 756328 3912805 SAUSA300_0681 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493384.1 755876 D 451515 CDS YP_493385.1 87162227 3914002 756502..756984 1 NC_007793.1 identified by match to protein family HMM PF04073; match to protein family HMM TIGR00011; ybaK/ebsC protein 756984 ybaK 3914002 ybaK Staphylococcus aureus subsp. aureus USA300_FPR3757 ybaK/ebsC protein YP_493385.1 756502 D 451515 CDS YP_493386.1 87161341 3912858 757237..757998 1 NC_007793.1 identified by match to protein family HMM PF00455; match to protein family HMM PF08220; DeoR family transcriptional regulator 757998 3912858 SAUSA300_0683 Staphylococcus aureus subsp. aureus USA300_FPR3757 DeoR family transcriptional regulator YP_493386.1 757237 D 451515 CDS YP_493387.1 87160806 3913038 757995..758915 1 NC_007793.1 identified by match to protein family HMM PF00294; fructose 1-phosphate kinase 758915 fruB 3913038 fruB Staphylococcus aureus subsp. aureus USA300_FPR3757 fructose 1-phosphate kinase YP_493387.1 757995 D 451515 CDS YP_493388.1 87159903 3914949 758921..760879 1 NC_007793.1 identified by match to protein family HMM PF00359; match to protein family HMM PF02378; match to protein family HMM PF02379; match to protein family HMM TIGR00829; match to protein family HMM TIGR00848; match to protein family HMM TIGR01427; fructose specific permease 760879 fruA 3914949 fruA Staphylococcus aureus subsp. aureus USA300_FPR3757 fructose specific permease YP_493388.1 758921 D 451515 CDS YP_493389.1 87161324 3915295 761187..762368 1 NC_007793.1 identified by match to protein family HMM PF01979; match to protein family HMM TIGR00221; N-acetylglucosamine-6-phosphate deacetylase 762368 nagA 3915295 nagA Staphylococcus aureus subsp. aureus USA300_FPR3757 N-acetylglucosamine-6-phosphate deacetylase YP_493389.1 761187 D 451515 CDS YP_493390.1 87161802 3914045 762589..763938 1 NC_007793.1 identified by match to protein family HMM PF00571; match to protein family HMM PF01595; match to protein family HMM PF03471; putative hemolysin 763938 3914045 SAUSA300_0687 Staphylococcus aureus subsp. aureus USA300_FPR3757 putative hemolysin YP_493390.1 762589 D 451515 CDS YP_493391.1 87160918 3914356 764160..764999 1 NC_007793.1 identified by match to protein family HMM PF00248; aldo/keto reductase family oxidoreductase 764999 3914356 SAUSA300_0688 Staphylococcus aureus subsp. aureus USA300_FPR3757 aldo/keto reductase family oxidoreductase YP_493391.1 764160 D 451515 CDS YP_493392.1 87160327 3915402 765131..766114 1 NC_007793.1 identified by match to protein family HMM PF00535; glycosyl transferase, group 2 family protein 766114 3915402 SAUSA300_0689 Staphylococcus aureus subsp. aureus USA300_FPR3757 glycosyl transferase, group 2 family protein YP_493392.1 765131 D 451515 CDS YP_493393.1 87160425 3913143 complement(766186..767241) 1 NC_007793.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; sensor histidine kinase SaeS 767241 saeS 3913143 saeS Staphylococcus aureus subsp. aureus USA300_FPR3757 sensor histidine kinase SaeS YP_493393.1 766186 R 451515 CDS YP_493394.1 87162296 3913605 complement(767241..767927) 1 NC_007793.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator SaeR 767927 saeR 3913605 saeR Staphylococcus aureus subsp. aureus USA300_FPR3757 DNA-binding response regulator SaeR YP_493394.1 767241 R 451515 CDS YP_493395.1 87162217 3913992 complement(767902..768375) 1 NC_007793.1 identified by match to protein family HMM PF07681; hypothetical protein 768375 3913992 SAUSA300_0692 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493395.1 767902 R 451515 CDS YP_493396.1 87161661 3913163 complement(768717..769157) 1 NC_007793.1 hypothetical protein 769157 3913163 SAUSA300_0693 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493396.1 768717 R 451515 CDS YP_493397.1 87160077 3913301 complement(769437..770021) 1 NC_007793.1 hypothetical protein 770021 3913301 SAUSA300_0694 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493397.1 769437 R 451515 CDS YP_493398.1 87162096 3914639 complement(770120..770833) 1 NC_007793.1 identified by match to protein family HMM PF04055; radical activating enzyme family protein 770833 3914639 SAUSA300_0695 Staphylococcus aureus subsp. aureus USA300_FPR3757 radical activating enzyme family protein YP_493398.1 770120 R 451515 CDS YP_493399.1 87160568 3914994 complement(770837..771256) 1 NC_007793.1 identified by match to protein family HMM PF01242; 6-pyruvoyl tetrahydrobiopterin synthase-like protein 771256 3914994 SAUSA300_0696 Staphylococcus aureus subsp. aureus USA300_FPR3757 6-pyruvoyl tetrahydrobiopterin synthase-like protein YP_493399.1 770837 R 451515 CDS YP_493400.1 87160495 3915085 complement(771258..771926) 1 NC_007793.1 identified by match to protein family HMM PF06508; match to protein family HMM TIGR00364; exsB protein 771926 3915085 SAUSA300_0697 Staphylococcus aureus subsp. aureus USA300_FPR3757 exsB protein YP_493400.1 771258 R 451515 CDS YP_493401.1 87162235 3914860 772277..772870 1 NC_007793.1 identified by match to protein family HMM PF00117; match to protein family HMM TIGR00566; para-aminobenzoate synthase, glutamine amidotransferase, component II 772870 pabA 3914860 pabA Staphylococcus aureus subsp. aureus USA300_FPR3757 para-aminobenzoate synthase, glutamine amidotransferase, component II YP_493401.1 772277 D 451515 CDS YP_493402.1 87161500 3913213 772854..774005 1 NC_007793.1 identified by match to protein family HMM PF00425; chorismate-binding domain-containing protein 774005 3913213 SAUSA300_0699 Staphylococcus aureus subsp. aureus USA300_FPR3757 chorismate-binding domain-containing protein YP_493402.1 772854 D 451515 CDS YP_493403.1 87162183 3913880 774005..774613 1 NC_007793.1 hypothetical protein 774613 3913880 SAUSA300_0700 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493403.1 774005 D 451515 CDS YP_493404.1 87160518 3914730 774973..775683 1 NC_007793.1 identified by match to protein family HMM PF02682; hypothetical protein 775683 3914730 SAUSA300_0701 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493404.1 774973 D 451515 CDS YP_493405.1 87161048 3912893 775667..776671 1 NC_007793.1 identified by match to protein family HMM PF02626; hypothetical protein 776671 3912893 SAUSA300_0702 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493405.1 775667 D 451515 CDS YP_493406.1 87161249 3913858 777145..779085 1 NC_007793.1 identified by match to protein family HMM PF00884; sulfatase family protein 779085 3913858 SAUSA300_0703 Staphylococcus aureus subsp. aureus USA300_FPR3757 sulfatase family protein YP_493406.1 777145 D 451515 CDS YP_493407.1 87162112 3913106 779356..781239 1 NC_007793.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 781239 3913106 SAUSA300_0704 Staphylococcus aureus subsp. aureus USA300_FPR3757 ABC transporter ATP-binding protein YP_493407.1 779356 D 451515 CDS YP_493408.1 87160157 3913127 781251..783032 1 NC_007793.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF00570; match to protein family HMM TIGR00614; match to protein family HMM TIGR01389; ATP-dependent DNA helicase RecQ 783032 recQ 3913127 recQ Staphylococcus aureus subsp. aureus USA300_FPR3757 ATP-dependent DNA helicase RecQ YP_493408.1 781251 D 451515 CDS YP_493409.1 87160325 3915400 783254..784231 1 NC_007793.1 identified by match to protein family HMM PF00005; putative osmoprotectant ABC transporter ATP-binding protein 784231 3915400 SAUSA300_0706 Staphylococcus aureus subsp. aureus USA300_FPR3757 putative osmoprotectant ABC transporter ATP-binding protein YP_493409.1 783254 D 451515 CDS YP_493410.1 87162224 3913999 784224..785738 1 NC_007793.1 identified by match to protein family HMM PF00528; match to protein family HMM PF04069; osmoprotectant ABC transporter permease 785738 3913999 SAUSA300_0707 Staphylococcus aureus subsp. aureus USA300_FPR3757 osmoprotectant ABC transporter permease YP_493410.1 784224 D 451515 CDS YP_493411.1 87161781 3913635 785978..787036 1 NC_007793.1 catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis; histidinol-phosphate aminotransferase 787036 hisC 3913635 hisC Staphylococcus aureus subsp. aureus USA300_FPR3757 histidinol-phosphate aminotransferase YP_493411.1 785978 D 451515 CDS YP_493412.1 87162343 3913827 787387..787929 1 NC_007793.1 identified by match to protein family HMM PF06941; hypothetical protein 787929 3913827 SAUSA300_0709 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493412.1 787387 D 451515 CDS YP_493413.1 87161232 3914786 788042..788140 1 NC_007793.1 hypothetical protein 788140 3914786 SAUSA300_0710 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493413.1 788042 D 451515 CDS YP_493414.1 87160820 3913541 complement(788553..789470) 1 NC_007793.1 identified by match to protein family HMM PF00781; match to protein family HMM TIGR00147; hypothetical protein 789470 3913541 SAUSA300_0711 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493414.1 788553 R 451515 CDS YP_493415.1 87161494 3914236 complement(789740..791245) 1 NC_007793.1 identified by match to protein family HMM PF00854; match to protein family HMM PF07690; match to protein family HMM TIGR00924; amino acid/peptide transporter (peptide:H+ symporter) 791245 3914236 SAUSA300_0712 Staphylococcus aureus subsp. aureus USA300_FPR3757 amino acid/peptide transporter (peptide:H+ symporter) YP_493415.1 789740 R 451515 CDS YP_493416.1 87160616 3913277 complement(791586..792086) 1 NC_007793.1 NADPH-dependent; catalyzes the reduction of 7-cyano-7-deazaguanine to 7-aminomethyl-7-deazaguanine in queuosine biosynthesis; 7-cyano-7-deazaguanine reductase 792086 folE 3913277 folE Staphylococcus aureus subsp. aureus USA300_FPR3757 7-cyano-7-deazaguanine reductase YP_493416.1 791586 R 451515 CDS YP_493417.1 87160042 3913363 complement(792106..792972) 1 NC_007793.1 identified by match to protein family HMM PF00892; integral membrane protein 792972 3913363 SAUSA300_0714 Staphylococcus aureus subsp. aureus USA300_FPR3757 integral membrane protein YP_493417.1 792106 R 451515 CDS YP_493418.1 87161741 3913027 793773..794171 1 NC_007793.1 in Salmonella NrdI has a stimulatory effect on the ribonucleotide reductase activity of NrdH with NrdEF; ribonucleotide reductase stimulatory protein 794171 nrdI 3913027 nrdI Staphylococcus aureus subsp. aureus USA300_FPR3757 ribonucleotide reductase stimulatory protein YP_493418.1 793773 D 451515 CDS YP_493419.1 87160290 3913497 794134..796239 1 NC_007793.1 Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha 796239 3913497 SAUSA300_0716 Staphylococcus aureus subsp. aureus USA300_FPR3757 ribonucleotide-diphosphate reductase subunit alpha YP_493419.1 794134 D 451515 CDS YP_493420.1 87162072 3914251 796357..797328 1 NC_007793.1 B2 or R2 protein; type 1b enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdE; ribonucleotide-diphosphate reductase subunit beta 797328 nrdF 3914251 nrdF Staphylococcus aureus subsp. aureus USA300_FPR3757 ribonucleotide-diphosphate reductase subunit beta YP_493420.1 796357 D 451515 CDS YP_493421.1 87161374 3914773 798036..799007 1 NC_007793.1 identified by match to protein family HMM PF01032; iron compound ABC transporter permease 799007 3914773 SAUSA300_0718 Staphylococcus aureus subsp. aureus USA300_FPR3757 iron compound ABC transporter permease YP_493421.1 798036 D 451515 CDS YP_493422.1 87159989 3914417 798994..799950 1 NC_007793.1 identified by match to protein family HMM PF01032; iron compound ABC transporter permease 799950 3914417 SAUSA300_0719 Staphylococcus aureus subsp. aureus USA300_FPR3757 iron compound ABC transporter permease YP_493422.1 798994 D 451515 CDS YP_493423.1 87160807 3913039 799947..800708 1 NC_007793.1 identified by match to protein family HMM PF00005; putative iron compound ABC transporter ATP-binding protein 800708 3913039 SAUSA300_0720 Staphylococcus aureus subsp. aureus USA300_FPR3757 putative iron compound ABC transporter ATP-binding protein YP_493423.1 799947 D 451515 CDS YP_493424.1 87162442 3915038 800827..801855 1 NC_007793.1 identified by match to protein family HMM PF01497; transferrin receptor 801855 3915038 SAUSA300_0721 Staphylococcus aureus subsp. aureus USA300_FPR3757 transferrin receptor YP_493424.1 800827 D 451515 CDS YP_493425.1 87161900 3914411 complement(802504..803427) 1 NC_007793.1 catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis; UDP-N-acetylenolpyruvoylglucosamine reductase 803427 murB 3914411 murB Staphylococcus aureus subsp. aureus USA300_FPR3757 UDP-N-acetylenolpyruvoylglucosamine reductase YP_493425.1 802504 R 451515 CDS YP_493426.1 87162085 3914628 complement(803554..804072) 1 NC_007793.1 identified by match to protein family HMM PF04229; hypothetical protein 804072 3914628 SAUSA300_0723 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493426.1 803554 R 451515 CDS YP_493427.1 87161351 3912868 804192..805070 1 NC_007793.1 hypothetical protein 805070 3912868 SAUSA300_0724 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493427.1 804192 D 451515 CDS YP_493428.1 87160980 3913312 805224..805544 1 NC_007793.1 hypothetical protein 805544 3913312 SAUSA300_0725 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493428.1 805224 D 451515 CDS YP_493429.1 87160263 3913665 805969..807093 1 NC_007793.1 identified by match to protein family HMM PF02595; match to protein family HMM TIGR00045; glycerate kinase family protein 807093 3913665 SAUSA300_0726 Staphylococcus aureus subsp. aureus USA300_FPR3757 glycerate kinase family protein YP_493429.1 805969 D 451515 CDS YP_493430.1 87160440 3912943 complement(807282..808508) 1 NC_007793.1 catalyzes the release of the N-terminal amino acid from a tripeptide; peptidase T 808508 pepT 3912943 pepT Staphylococcus aureus subsp. aureus USA300_FPR3757 peptidase T YP_493430.1 807282 R 451515 CDS YP_493431.1 87162233 3914858 complement(808522..809016) 1 NC_007793.1 hypothetical protein 809016 3914858 SAUSA300_0728 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493431.1 808522 R 451515 CDS YP_493432.1 87160080 3913304 complement(809034..809795) 1 NC_007793.1 identified by match to protein family HMM PF06738; hypothetical protein 809795 3913304 SAUSA300_0729 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493432.1 809034 R 451515 CDS YP_493433.1 87161910 3913001 complement(809991..811061) 1 NC_007793.1 identified by match to protein family HMM PF00990; match to protein family HMM PF07694; match to protein family HMM TIGR00254; GGDEF domain-containing protein 811061 3913001 SAUSA300_0730 Staphylococcus aureus subsp. aureus USA300_FPR3757 GGDEF domain-containing protein YP_493433.1 809991 R 451515 CDS YP_493434.1 87162251 3914876 811379..812434 1 NC_007793.1 identified by match to protein family HMM PF00953; glycosyl transferase, group 4 family protein 812434 3914876 SAUSA300_0731 Staphylococcus aureus subsp. aureus USA300_FPR3757 glycosyl transferase, group 4 family protein YP_493434.1 811379 D 451515 CDS YP_493435.1 87161519 3913193 complement(812604..813245) 1 NC_007793.1 identified by match to protein family HMM PF01205; match to protein family HMM TIGR00257; hypothetical protein 813245 3913193 SAUSA300_0732 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493435.1 812604 R 451515 CDS YP_493436.1 87160117 3913381 813389..814255 1 NC_007793.1 identified by match to protein family HMM PF02645; match to protein family HMM TIGR00762; degV family protein 814255 3913381 SAUSA300_0733 Staphylococcus aureus subsp. aureus USA300_FPR3757 degV family protein YP_493436.1 813389 D 451515 CDS YP_493437.1 87162312 3913446 814619..815701 1 NC_007793.1 identified by match to protein family HMM PF00271; match to protein family HMM PF04851; putative comf operon protein 1 815701 3913446 SAUSA300_0734 Staphylococcus aureus subsp. aureus USA300_FPR3757 putative comf operon protein 1 YP_493437.1 814619 D 451515 CDS YP_493438.1 87160532 3914012 815694..816368 1 NC_007793.1 hypothetical protein 816368 3914012 SAUSA300_0735 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493438.1 815694 D 451515 CDS YP_493439.1 87160033 3913354 816429..817001 1 NC_007793.1 identified by match to protein family HMM PF02482; match to protein family HMM TIGR00741; ribosomal subunit interface protein 817001 yfiA 3913354 yfiA Staphylococcus aureus subsp. aureus USA300_FPR3757 ribosomal subunit interface protein YP_493439.1 816429 D 451515 CDS YP_493440.1 87162039 3914315 817415..819946 1 NC_007793.1 functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins; preprotein translocase subunit SecA 819946 secA 3914315 secA Staphylococcus aureus subsp. aureus USA300_FPR3757 preprotein translocase subunit SecA YP_493440.1 817415 D 451515 CDS YP_493441.1 87160262 3913664 821780..822619 1 NC_007793.1 identified by match to protein family HMM PF01476; match to protein family HMM PF05257; LysM domain-containing protein 822619 3913664 SAUSA300_0739 Staphylococcus aureus subsp. aureus USA300_FPR3757 LysM domain-containing protein YP_493441.1 821780 D 451515 CDS YP_493442.1 87162329 3913463 822793..823443 1 NC_007793.1 hypothetical protein 823443 3913463 SAUSA300_0740 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493442.1 822793 D 451515 CDS YP_493443.1 87160625 3913286 823945..825930 1 NC_007793.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B 825930 uvrB 3913286 uvrB Staphylococcus aureus subsp. aureus USA300_FPR3757 excinuclease ABC subunit B YP_493443.1 823945 D 451515 CDS YP_493444.1 87160557 3913512 825938..828784 1 NC_007793.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate; excinuclease ABC subunit A 828784 uvrA 3913512 uvrA Staphylococcus aureus subsp. aureus USA300_FPR3757 excinuclease ABC subunit A YP_493444.1 825938 D 451515 CDS YP_493445.1 87161863 3914551 829446..830378 1 NC_007793.1 catalyzes the phosphorylation of the phosphocarrier protein HPr of the bacterial phosphotransferase system; HPr kinase/phosphorylase 830378 hprK 3914551 hprK Staphylococcus aureus subsp. aureus USA300_FPR3757 HPr kinase/phosphorylase YP_493445.1 829446 D 451515 CDS YP_493446.1 87161274 3915245 830384..831223 1 NC_007793.1 transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase 831223 lgt 3915245 lgt Staphylococcus aureus subsp. aureus USA300_FPR3757 prolipoprotein diacylglyceryl transferase YP_493446.1 830384 D 451515 CDS YP_493447.1 87161701 3914466 831231..831716 1 NC_007793.1 identified by match to protein family HMM PF00132; putative acetyltransferase 831716 3914466 SAUSA300_0745 Staphylococcus aureus subsp. aureus USA300_FPR3757 putative acetyltransferase YP_493447.1 831231 D 451515 CDS YP_493448.1 87161140 3913729 831724..833163 1 NC_007793.1 identified by match to protein family HMM PF00515; match to protein family HMM PF07719; TPR domain-containing protein 833163 3913729 SAUSA300_0746 Staphylococcus aureus subsp. aureus USA300_FPR3757 TPR domain-containing protein YP_493448.1 831724 D 451515 CDS YP_493449.1 87161001 3913567 833230..834165 1 NC_007793.1 identified by match to protein family HMM PF00070; match to protein family HMM PF07992; match to protein family HMM TIGR01292; thioredoxin-disulfide reductase 834165 trxB 3913567 trxB Staphylococcus aureus subsp. aureus USA300_FPR3757 thioredoxin-disulfide reductase YP_493449.1 833230 D 451515 CDS YP_493450.1 87160086 3914919 835045..835956 1 NC_007793.1 identified by match to protein family HMM PF03668; hypothetical protein 835956 3914919 SAUSA300_0748 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493450.1 835045 D 451515 CDS YP_493451.1 87162132 3913596 835953..836948 1 NC_007793.1 identified by match to protein family HMM PF01933; match to protein family HMM TIGR01826; hypothetical protein 836948 3913596 SAUSA300_0749 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493451.1 835953 D 451515 CDS YP_493452.1 87161420 3914069 837058..838002 1 NC_007793.1 identified by match to protein family HMM PF02650; match to protein family HMM TIGR00647; hypothetical protein 838002 3914069 SAUSA300_0750 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493452.1 837058 D 451515 CDS YP_493453.1 87161484 3914226 838576..839163 1 NC_007793.1 hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit 839163 clpP 3914226 clpP Staphylococcus aureus subsp. aureus USA300_FPR3757 ATP-dependent Clp protease proteolytic subunit YP_493453.1 838576 D 451515 CDS YP_493454.1 87160579 3915005 complement(839406..840308) 1 NC_007793.1 identified by match to protein family HMM PF01370; match to protein family HMM PF07993; match to protein family HMM TIGR01777; hypothetical protein 840308 3915005 SAUSA300_0753 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493454.1 839406 R 451515 CDS YP_493455.1 87160399 3912844 841010..841639 1 NC_007793.1 hypothetical protein 841639 3912844 SAUSA300_0754 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493455.1 841010 D 451515 CDS YP_493456.1 87161948 3913705 842281..843294 1 NC_007793.1 identified by match to protein family HMM PF04198; glycolytic operon regulator 843294 3913705 SAUSA300_0755 Staphylococcus aureus subsp. aureus USA300_FPR3757 glycolytic operon regulator YP_493456.1 842281 D 451515 CDS YP_493457.1 87161115 3914341 843347..844357 1 NC_007793.1 identified by match to protein family HMM PF00044; match to protein family HMM PF02800; match to protein family HMM TIGR01534; glyceraldehyde-3-phosphate dehydrogenase, type I 844357 gap 3914341 gap Staphylococcus aureus subsp. aureus USA300_FPR3757 glyceraldehyde-3-phosphate dehydrogenase, type I YP_493457.1 843347 D 451515 CDS YP_493458.1 87160408 3912853 844496..845686 1 NC_007793.1 Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase 845686 pgk 3912853 pgk Staphylococcus aureus subsp. aureus USA300_FPR3757 phosphoglycerate kinase YP_493458.1 844496 D 451515 CDS YP_493459.1 87162272 3915312 845808..846569 1 NC_007793.1 Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate; triosephosphate isomerase 846569 tpiA 3915312 tpiA Staphylococcus aureus subsp. aureus USA300_FPR3757 triosephosphate isomerase YP_493459.1 845808 D 451515 CDS YP_493460.1 87161543 3914669 846572..848089 1 NC_007793.1 catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate; phosphoglyceromutase 848089 gpmI 3914669 gpmI Staphylococcus aureus subsp. aureus USA300_FPR3757 phosphoglyceromutase YP_493460.1 846572 D 451515 CDS YP_493461.1 87160110 3913373 848219..849523 1 NC_007793.1 enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase 849523 eno 3913373 eno Staphylococcus aureus subsp. aureus USA300_FPR3757 phosphopyruvate hydratase YP_493461.1 848219 D 451515 CDS YP_493462.1 87160797 3914617 849863..850321 1 NC_007793.1 hypothetical protein 850321 3914617 SAUSA300_0761 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493462.1 849863 D 451515 CDS YP_493463.2 162138563 3914507 850388..850621 1 NC_007793.1 identified by match to protein family HMM PF03840; match to protein family HMM TIGR00810; preprotein translocase subunit SecG 850621 secG 3914507 secG Staphylococcus aureus subsp. aureus USA300_FPR3757 preprotein translocase subunit SecG YP_493463.2 850388 D 451515 CDS YP_493464.1 87161909 3913000 850737..851477 1 NC_007793.1 carboxylesterase 851477 est 3913000 est Staphylococcus aureus subsp. aureus USA300_FPR3757 carboxylesterase YP_493464.1 850737 D 451515 CDS YP_493465.1 87161515 3913189 851511..853883 1 NC_007793.1 identified by match to protein family HMM PF00575; match to protein family HMM PF00773; match to protein family HMM PF08206; match to protein family HMM TIGR00358; match to protein family HMM TIGR02063; ribonuclease R 853883 rnr 3913189 rnr Staphylococcus aureus subsp. aureus USA300_FPR3757 ribonuclease R YP_493465.1 851511 D 451515 CDS YP_493466.1 87162186 3913883 853905..854369 1 NC_007793.1 binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein 854369 smpB 3913883 smpB Staphylococcus aureus subsp. aureus USA300_FPR3757 SsrA-binding protein YP_493466.1 853905 D 451515 CDS YP_493467.1 87160100 3914933 complement(855691..856014) 1 NC_007793.1 hypothetical protein 856014 3914933 SAUSA300_0767 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493467.1 855691 R 451515 CDS YP_493468.1 87160695 3914189 complement(856030..856176) 1 NC_007793.1 hypothetical protein 856176 3914189 SAUSA300_0768 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493468.1 856030 R 451515 CDS YP_493469.1 87161825 3913796 complement(856368..857096) 1 NC_007793.1 hypothetical protein 857096 3913796 SAUSA300_0769 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493469.1 856368 R 451515 CDS YP_493470.1 87160092 3914925 857695..858138 1 NC_007793.1 hypothetical protein 858138 3914925 SAUSA300_0770 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493470.1 857695 D 451515 CDS YP_493471.1 87161644 3913694 858355..858885 1 NC_007793.1 identified by match to protein family HMM PF00583; acetyltransferase 858885 3913694 SAUSA300_0771 Staphylococcus aureus subsp. aureus USA300_FPR3757 acetyltransferase YP_493471.1 858355 D 451515 CDS YP_493472.1 87160156 3913126 859148..861949 1 NC_007793.1 identified by match to protein family HMM PF00746; match to protein family HMM PF04650; match to protein family HMM TIGR01167; match to protein family HMM TIGR01168; clumping factor A 861949 clfA 3913126 clfA Staphylococcus aureus subsp. aureus USA300_FPR3757 clumping factor A YP_493472.1 859148 D 451515 CDS YP_493473.1 87160504 3915095 862170..863696 1 NC_007793.1 identified by similarity to SP:P07767; putative staphylocoagulase 863696 3915095 SAUSA300_0773 Staphylococcus aureus subsp. aureus USA300_FPR3757 putative staphylocoagulase YP_493473.1 862170 D 451515 CDS YP_493474.1 87161081 3914267 864047..865069 1 NC_007793.1 secretory extracellular matrix and plasma binding protein 865069 empbp 3914267 empbp Staphylococcus aureus subsp. aureus USA300_FPR3757 secretory extracellular matrix and plasma binding protein YP_493474.1 864047 D 451515 CDS YP_493475.1 87161273 3915244 865404..865874 1 NC_007793.1 hypothetical protein 865874 3915244 SAUSA300_0775 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493475.1 865404 D 451515 CDS YP_493476.1 87161840 3913811 866215..866901 1 NC_007793.1 identified by match to protein family HMM PF00565; thermonuclease 866901 nuc 3913811 nuc Staphylococcus aureus subsp. aureus USA300_FPR3757 thermonuclease YP_493476.1 866215 D 451515 CDS YP_493477.1 87161313 3914809 867258..867458 1 NC_007793.1 identified by match to protein family HMM PF00313; cold shock protein 867458 3914809 SAUSA300_0777 Staphylococcus aureus subsp. aureus USA300_FPR3757 cold shock protein YP_493477.1 867258 D 451515 CDS YP_493478.1 87161878 3914566 complement(867954..868172) 1 NC_007793.1 hypothetical protein 868172 3914566 SAUSA300_0778 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493478.1 867954 R 451515 CDS YP_493479.1 87160175 3914527 complement(868234..868518) 1 NC_007793.1 hypothetical protein 868518 3914527 SAUSA300_0779 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493479.1 868234 R 451515 CDS YP_493480.1 87160732 3913433 complement(868606..869175) 1 NC_007793.1 hypothetical protein 869175 3913433 SAUSA300_0780 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493480.1 868606 R 451515 CDS YP_493481.1 87160102 3913365 870181..870384 1 NC_007793.1 identified by match to protein family HMM PF06855; hypothetical protein 870384 3913365 SAUSA300_0782 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493481.1 870181 D 451515 CDS YP_493482.1 87161936 3914596 complement(870381..870617) 1 NC_007793.1 hypothetical protein 870617 3914596 SAUSA300_0781 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493482.1 870381 R 451515 CDS YP_493483.1 87161217 3912792 870863..871423 1 NC_007793.1 identified by match to protein family HMM PF00300; phosphoglycerate mutase family protein 871423 3912792 SAUSA300_0783 Staphylococcus aureus subsp. aureus USA300_FPR3757 phosphoglycerate mutase family protein YP_493483.1 870863 D 451515 CDS YP_493484.1 87161151 3914496 complement(871496..872113) 1 NC_007793.1 identified by match to protein family HMM PF01810; LysE/YggA family protein 872113 3914496 SAUSA300_0784 Staphylococcus aureus subsp. aureus USA300_FPR3757 LysE/YggA family protein YP_493484.1 871496 R 451515 CDS YP_493485.1 87160404 3912849 complement(872268..872762) 1 NC_007793.1 acetyltransferase 872762 3912849 SAUSA300_0785 Staphylococcus aureus subsp. aureus USA300_FPR3757 acetyltransferase YP_493485.1 872268 R 451515 CDS YP_493486.1 87162273 3915313 complement(873161..873583) 1 NC_007793.1 identified by match to protein family HMM PF02566; OsmC/Ohr family protein 873583 3915313 SAUSA300_0786 Staphylococcus aureus subsp. aureus USA300_FPR3757 OsmC/Ohr family protein YP_493486.1 873161 R 451515 CDS YP_493487.1 87160800 3913032 873731..874447 1 NC_007793.1 catalyzes the dehydration of 3-dehydroquinate to form 3-dehydroshikimate in aromatic amino acid biosynthesis; 3-dehydroquinate dehydratase 874447 aroD 3913032 aroD Staphylococcus aureus subsp. aureus USA300_FPR3757 3-dehydroquinate dehydratase YP_493487.1 873731 D 451515 CDS YP_493488.1 87160123 3912976 874530..875069 1 NC_007793.1 identified by match to protein family HMM PF00881; nitroreductase family protein 875069 3912976 SAUSA300_0788 Staphylococcus aureus subsp. aureus USA300_FPR3757 nitroreductase family protein YP_493488.1 874530 D 451515 CDS YP_493489.1 87161968 3914480 complement(875219..875539) 1 NC_007793.1 identified by match to protein family HMM PF00085; putative thioredoxin 875539 3914480 SAUSA300_0789 Staphylococcus aureus subsp. aureus USA300_FPR3757 putative thioredoxin YP_493489.1 875219 R 451515 CDS YP_493490.1 87161720 3915286 875683..876039 1 NC_007793.1 identified by match to protein family HMM PF03960; match to protein family HMM TIGR01617; hypothetical protein 876039 3915286 SAUSA300_0790 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493490.1 875683 D 451515 CDS YP_493491.1 87161339 3915310 876197..876577 1 NC_007793.1 part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor; glycine cleavage system protein H 876577 gcvH 3915310 gcvH Staphylococcus aureus subsp. aureus USA300_FPR3757 glycine cleavage system protein H YP_493491.1 876197 D 451515 CDS YP_493492.1 87160922 3914360 876641..876754 1 NC_007793.1 hypothetical protein 876754 3914360 SAUSA300_0792 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493492.1 876641 D 451515 CDS YP_493493.1 87160478 3913333 876756..877634 1 NC_007793.1 hypothetical protein 877634 3913333 SAUSA300_0793 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493493.1 876756 D 451515 CDS YP_493494.1 87162316 3913450 878376..878762 1 NC_007793.1 identified by match to protein family HMM PF01751; TOPRIM domain-containing protein 878762 3913450 SAUSA300_0794 Staphylococcus aureus subsp. aureus USA300_FPR3757 TOPRIM domain-containing protein YP_493494.1 878376 D 451515 CDS YP_493495.1 87161970 3914482 878755..879051 1 NC_007793.1 hypothetical protein 879051 3914482 SAUSA300_0795 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493495.1 878755 D 451515 CDS YP_493496.1 87161235 3914789 879301..880326 1 NC_007793.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 880326 3914789 SAUSA300_0796 Staphylococcus aureus subsp. aureus USA300_FPR3757 ABC transporter ATP-binding protein YP_493496.1 879301 D 451515 CDS YP_493497.1 87160784 3914604 880319..881014 1 NC_007793.1 identified by match to protein family HMM PF00528; ABC transporter permease 881014 3914604 SAUSA300_0797 Staphylococcus aureus subsp. aureus USA300_FPR3757 ABC transporter permease YP_493497.1 880319 D 451515 CDS YP_493498.1 87160050 3912903 881032..881853 1 NC_007793.1 identified by match to protein family HMM PF03180; ABC transporter substrate-binding protein 881853 3912903 SAUSA300_0798 Staphylococcus aureus subsp. aureus USA300_FPR3757 ABC transporter substrate-binding protein YP_493498.1 881032 D 451515 CDS YP_493499.1 87162323 3913457 complement(881996..883216) 1 NC_007793.1 Staphylococcus aureus pathogenicity island; identified by match to protein family HMM PF00589; integrase 883216 int 3913457 int Staphylococcus aureus subsp. aureus USA300_FPR3757 integrase YP_493499.1 881996 R 451515 CDS YP_493500.1 87161791 3914034 complement(883304..884032) 1 NC_007793.1 Staphylococcus aureus pathogenicity island; identified by match to protein family HMM PF01123; match to protein family HMM PF02876; enterotoxin K 884032 sek 3914034 sek Staphylococcus aureus subsp. aureus USA300_FPR3757 enterotoxin K YP_493500.1 883304 R 451515 CDS YP_493501.1 87161054 3912764 complement(884056..884784) 1 NC_007793.1 Staphylococcus aureus pathogenicity island; identified by match to protein family HMM PF01123; match to protein family HMM PF02876; enterotoxin Q 884784 seq 3912764 seq Staphylococcus aureus subsp. aureus USA300_FPR3757 enterotoxin Q YP_493501.1 884056 R 451515 CDS YP_493502.1 87161552 3915167 complement(884801..885259) 1 NC_007793.1 Staphylococcus aureus pathogenicity island; identified by match to protein family HMM PF06114; hypothetical protein 885259 3915167 SAUSA300_0802 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493502.1 884801 R 451515 CDS YP_493503.1 87161187 3914898 complement(885271..885603) 1 NC_007793.1 Staphylococcus aureus pathogenicity island; identified by match to protein family HMM PF00356; match to protein family HMM PF01381; Cro/CI family transcriptional regulator 885603 3914898 SAUSA300_0803 Staphylococcus aureus subsp. aureus USA300_FPR3757 Cro/CI family transcriptional regulator YP_493503.1 885271 R 451515 CDS YP_493504.1 87160400 3912845 885817..886059 1 NC_007793.1 identified by match to protein family HMM PF01381; putative transcriptional regulator 886059 3912845 SAUSA300_0804 Staphylococcus aureus subsp. aureus USA300_FPR3757 putative transcriptional regulator YP_493504.1 885817 D 451515 CDS YP_493505.1 87160119 3913383 886052..886324 1 NC_007793.1 Staphylococcus aureus pathogenicity island; pathogenicity island protein 886324 3913383 SAUSA300_0805 Staphylococcus aureus subsp. aureus USA300_FPR3757 pathogenicity island protein YP_493505.1 886052 D 451515 CDS YP_493506.1 87160726 3913427 886476..886679 1 NC_007793.1 Staphylococcus aureus pathogenicity island; hypothetical protein 886679 3913427 SAUSA300_0806 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493506.1 886476 D 451515 CDS YP_493507.1 87161656 3913158 886681..887064 1 NC_007793.1 Staphylococcus aureus pathogenicity island; identified by similarity to GB:AAG29614.1; hypothetical protein 887064 3913158 SAUSA300_0807 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493507.1 886681 D 451515 CDS YP_493508.1 87162198 3914841 887065..887313 1 NC_007793.1 Staphylococcus aureus pathogenicity island; identified by match to protein family HMM PF07342; hypothetical protein 887313 3914841 SAUSA300_0808 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493508.1 887065 D 451515 CDS YP_493509.1 87161639 3913689 887405..889777 1 NC_007793.1 Staphylococcus aureus pathogenicity island; identified by match to protein family HMM PF03288; match to protein family HMM TIGR01613; putative DNA primase 889777 3913689 SAUSA300_0809 Staphylococcus aureus subsp. aureus USA300_FPR3757 putative DNA primase YP_493509.1 887405 D 451515 CDS YP_493510.1 87162215 3913990 890448..890792 1 NC_007793.1 Staphylococcus aureus pathogenicity island; hypothetical protein 890792 3913990 SAUSA300_0810 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493510.1 890448 D 451515 CDS YP_493511.1 87161312 3914808 891017..891223 1 NC_007793.1 Staphylococcus aureus pathogenicity island; hypothetical protein 891223 3914808 SAUSA300_0811 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493511.1 891017 D 451515 CDS YP_493512.1 87161706 3914471 891411..892268 1 NC_007793.1 Staphylococcus aureus pathogenicity island; hypothetical protein 892268 3914471 SAUSA300_0812 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493512.1 891411 D 451515 CDS YP_493513.1 87160127 3912980 892503..892943 1 NC_007793.1 Staphylococcus aureus pathogenicity island; hypothetical protein 892943 3912980 SAUSA300_0813 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493513.1 892503 D 451515 CDS YP_493514.1 87160576 3915002 893372..894340 1 NC_007793.1 Staphylococcus aureus pathogenicity island; identified by match to protein family HMM PF07751; hypothetical protein 894340 3915002 SAUSA300_0814 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493514.1 893372 D 451515 CDS YP_493515.1 87161698 3914463 complement(894575..895129) 1 NC_007793.1 Staphylococcus aureus pathogenicity island; Ear protein 895129 ear 3914463 ear Staphylococcus aureus subsp. aureus USA300_FPR3757 Ear protein YP_493515.1 894575 R 451515 CDS YP_493516.1 87162409 3915256 896163..896357 1 NC_007793.1 identified by match to protein family HMM PF05532; CsbD-like superfamily protein 896357 3915256 SAUSA300_0816 Staphylococcus aureus subsp. aureus USA300_FPR3757 CsbD-like superfamily protein YP_493516.1 896163 D 451515 CDS YP_493517.1 87160846 3913392 complement(896590..897441) 1 NC_007793.1 identified by match to protein family HMM PF04018; hypothetical protein 897441 3913392 SAUSA300_0817 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493517.1 896590 R 451515 CDS YP_493518.1 87160894 3912971 897769..898530 1 NC_007793.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR01978; FeS assembly ATPase SufC 898530 sufC 3912971 sufC Staphylococcus aureus subsp. aureus USA300_FPR3757 FeS assembly ATPase SufC YP_493518.1 897769 D 451515 CDS YP_493519.1 87161300 3914719 898628..899935 1 NC_007793.1 identified by match to protein family HMM PF01458; match to protein family HMM TIGR01981; FeS assembly protein SufD 899935 sufD 3914719 sufD Staphylococcus aureus subsp. aureus USA300_FPR3757 FeS assembly protein SufD YP_493519.1 898628 D 451515 CDS YP_493520.1 87161862 3913968 900050..901291 1 NC_007793.1 identified by match to protein family HMM PF00266; match to protein family HMM PF01212; match to protein family HMM TIGR01979; SufS subfamily cysteine desulfurase 901291 sufS 3913968 sufS Staphylococcus aureus subsp. aureus USA300_FPR3757 SufS subfamily cysteine desulfurase YP_493520.1 900050 D 451515 CDS YP_493521.1 87162412 3915259 901281..901745 1 NC_007793.1 identified by match to protein family HMM PF01592; match to protein family HMM TIGR01994; NifU family SUF system FeS assembly protein 901745 3915259 SAUSA300_0821 Staphylococcus aureus subsp. aureus USA300_FPR3757 NifU family SUF system FeS assembly protein YP_493521.1 901281 D 451515 CDS YP_493522.1 87160384 3912810 901896..903293 1 NC_007793.1 identified by match to protein family HMM PF01458; match to protein family HMM TIGR01980; FeS assembly protein SufB 903293 sufB 3912810 sufB Staphylococcus aureus subsp. aureus USA300_FPR3757 FeS assembly protein SufB YP_493522.1 901896 D 451515 CDS YP_493523.1 87160943 3913783 complement(903623..903937) 1 NC_007793.1 hypothetical protein 903937 3913783 SAUSA300_0823 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493523.1 903623 R 451515 CDS YP_493524.1 87161461 3914052 904302..905342 1 NC_007793.1 identified by match to protein family HMM PF00571; match to protein family HMM PF01595; hypothetical protein 905342 3914052 SAUSA300_0824 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493524.1 904302 D 451515 CDS YP_493525.1 87161792 3914035 905356..906423 1 NC_007793.1 identified by match to protein family HMM PF01180; match to protein family HMM PF03060; 2-nitropropane dioxygenase family oxidoreductase 906423 3914035 SAUSA300_0825 Staphylococcus aureus subsp. aureus USA300_FPR3757 2-nitropropane dioxygenase family oxidoreductase YP_493525.1 905356 D 451515 CDS YP_493526.1 87160619 3913280 906636..907484 1 NC_007793.1 identified by match to protein family HMM PF01904; hypothetical protein 907484 3913280 SAUSA300_0826 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493526.1 906636 D 451515 CDS YP_493527.1 87159978 3914830 907497..908324 1 NC_007793.1 identified by match to protein family HMM PF01925; hypothetical protein 908324 3914830 SAUSA300_0827 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493527.1 907497 D 451515 CDS YP_493528.1 87162282 3915322 908351..909670 1 NC_007793.1 identified by match to protein family HMM PF00149; 5'-nucleotidase family protein 909670 3915322 SAUSA300_0828 Staphylococcus aureus subsp. aureus USA300_FPR3757 5'-nucleotidase family protein YP_493528.1 908351 D 451515 CDS YP_493529.1 87161551 3914679 909754..910671 1 NC_007793.1 catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group; lipoyl synthase 910671 lipA 3914679 lipA Staphylococcus aureus subsp. aureus USA300_FPR3757 lipoyl synthase YP_493529.1 909754 D 451515 CDS YP_493530.1 87161452 3914125 910801..911184 1 NC_007793.1 identified by match to protein family HMM PF06265; hypothetical protein 911184 3914125 SAUSA300_0830 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493530.1 910801 D 451515 CDS YP_493531.1 87160856 3913402 complement(911263..911529) 1 NC_007793.1 hypothetical protein 911529 3913402 SAUSA300_0831 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493531.1 911263 R 451515 CDS YP_493532.1 87159946 3913833 911627..912061 1 NC_007793.1 identified by match to protein family HMM PF01934; hypothetical protein 912061 3913833 SAUSA300_0832 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493532.1 911627 D 451515 CDS YP_493533.1 87160369 3913243 912061..912840 1 NC_007793.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01457; match to protein family HMM TIGR01460; hypothetical protein 912840 3913243 SAUSA300_0833 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493533.1 912061 D 451515 CDS YP_493534.1 87162234 3914859 912873..913832 1 NC_007793.1 identified by match to protein family HMM PF00389; match to protein family HMM PF02826; D-isomer specific 2-hydroxyacid dehydrogenase 913832 3914859 SAUSA300_0834 Staphylococcus aureus subsp. aureus USA300_FPR3757 D-isomer specific 2-hydroxyacid dehydrogenase YP_493534.1 912873 D 451515 CDS YP_493535.1 87161647 3913697 914412..915869 1 NC_007793.1 transfers D-alanine to the D-alanyl carrier protein during the incorporation of D-alanine into lipoteichoic acid; D-alanine--poly(phosphoribitol) ligase subunit 1 915869 dltA 3913697 dltA Staphylococcus aureus subsp. aureus USA300_FPR3757 D-alanine--poly(phosphoribitol) ligase subunit 1 YP_493535.1 914412 D 451515 CDS YP_493536.1 87160825 3913546 915866..917080 1 NC_007793.1 identified by match to protein family HMM PF03062; dltB protein 917080 dltB 3913546 dltB Staphylococcus aureus subsp. aureus USA300_FPR3757 dltB protein YP_493536.1 915866 D 451515 CDS YP_493537.1 87160121 3912974 917098..917334 1 NC_007793.1 D-alanyl carrier protein subunit; involved in the incorporation of D-alanine into membrane-associated D-alanyl-lipoteichoic acid; D-alanyl carrier protein is the acceptor of activated D-alanine which it donates to a membrane acceptor(D-alanyl transferase) for incorporation into membrane lipoteichoic acid; D-alanine--poly(phosphoribitol) ligase subunit 2 917334 dltC 3912974 dltC Staphylococcus aureus subsp. aureus USA300_FPR3757 D-alanine--poly(phosphoribitol) ligase subunit 2 YP_493537.1 917098 D 451515 CDS YP_493538.1 87160697 3914191 917331..918506 1 NC_007793.1 identified by match to protein family HMM PF04914; match to protein family HMM PF04915; match to protein family HMM PF04918; D-alanine-activating enzyme/D-alanine-D-alanyl, dltD protein 918506 dltD 3914191 dltD Staphylococcus aureus subsp. aureus USA300_FPR3757 D-alanine-activating enzyme/D-alanine-D-alanyl, dltD protein YP_493538.1 917331 D 451515 CDS YP_493539.1 87159950 3913837 complement(918769..919011) 1 NC_007793.1 identified by match to protein family HMM PF01106; hypothetical protein 919011 3913837 SAUSA300_0839 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493539.1 918769 R 451515 CDS YP_493540.1 87160482 3913337 919112..919435 1 NC_007793.1 identified by match to protein family HMM PF07315; hypothetical protein 919435 3913337 SAUSA300_0840 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493540.1 919112 D 451515 CDS YP_493541.1 87162147 3914694 complement(919494..920558) 1 NC_007793.1 identified by match to protein family HMM PF00070; match to protein family HMM PF07992; hypothetical protein 920558 3914694 SAUSA300_0841 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493541.1 919494 R 451515 CDS YP_493542.1 87161738 3913024 920875..921111 1 NC_007793.1 identified by match to protein family HMM PF07293; hypothetical protein 921111 3913024 SAUSA300_0842 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493542.1 920875 D 451515 CDS YP_493543.1 87160639 3915074 921124..921483 1 NC_007793.1 identified by match to protein family HMM PF01521; match to protein family HMM TIGR00049; hypothetical protein 921483 3915074 SAUSA300_0843 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493543.1 921124 D 451515 CDS YP_493544.1 87160719 3912834 921937..923145 1 NC_007793.1 identified by match to protein family HMM PF00070; match to protein family HMM PF07992; hypothetical protein 923145 3912834 SAUSA300_0844 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493544.1 921937 D 451515 CDS YP_493545.1 87160159 3913129 923276..924751 1 NC_007793.1 identified by match to protein family HMM PF00883; match to protein family HMM PF02789; cytosol aminopeptidase 924751 ampA 3913129 ampA Staphylococcus aureus subsp. aureus USA300_FPR3757 cytosol aminopeptidase YP_493545.1 923276 D 451515 CDS YP_493546.1 87161854 3913960 925162..926478 1 NC_007793.1 authenticated frameshift; Na+/H+ antiporter family protein 926478 3913960 SAUSA300_0846 Staphylococcus aureus subsp. aureus USA300_FPR3757 Na+/H+ antiporter family protein YP_493546.1 925162 D 451515 CDS YP_493547.1 87161311 3914807 926497..926871 1 NC_007793.1 identified by match to protein family HMM PF03061; match to protein family HMM TIGR00369; hypothetical protein 926871 3914807 SAUSA300_0847 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493547.1 926497 D 451515 CDS YP_493548.1 87162441 3915037 complement(926927..928081) 1 NC_007793.1 hypothetical protein 928081 3915037 SAUSA300_0848 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493548.1 926927 R 451515 CDS YP_493549.1 87161654 3913156 complement(928330..928686) 1 NC_007793.1 subunit G of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; putative monovalent cation/H+ antiporter subunit G 928686 mnhG 3913156 mnhG Staphylococcus aureus subsp. aureus USA300_FPR3757 putative monovalent cation/H+ antiporter subunit G YP_493549.1 928330 R 451515 CDS YP_493550.1 87161912 3913003 complement(928664..928957) 1 NC_007793.1 subunit F of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; putative monovalent cation/H+ antiporter subunit F 928957 mnhF 3913003 mnhF Staphylococcus aureus subsp. aureus USA300_FPR3757 putative monovalent cation/H+ antiporter subunit F YP_493550.1 928664 R 451515 CDS YP_493551.1 87160519 3914731 complement(928957..929436) 1 NC_007793.1 subunit E of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; putative monovalent cation/H+ antiporter subunit E 929436 mnhE 3914731 mnhE Staphylococcus aureus subsp. aureus USA300_FPR3757 putative monovalent cation/H+ antiporter subunit E YP_493551.1 928957 R 451515 CDS YP_493552.1 87160771 3913746 complement(929438..930934) 1 NC_007793.1 subunit D of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; contains an oxidoreductase domain; catalyzes the transfer of electrons from NADH to ubiquinone; putative monovalent cation/H+ antiporter subunit D 930934 mnhD 3913746 mnhD Staphylococcus aureus subsp. aureus USA300_FPR3757 putative monovalent cation/H+ antiporter subunit D YP_493552.1 929438 R 451515 CDS YP_493553.1 87161160 3914505 complement(930927..931256) 1 NC_007793.1 subunit C of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; putative monovalent cation/H+ antiporter subunit C 931256 mnhC 3914505 mnhC Staphylococcus aureus subsp. aureus USA300_FPR3757 putative monovalent cation/H+ antiporter subunit C YP_493553.1 930927 R 451515 CDS YP_493554.1 87160910 3915161 complement(931268..931696) 1 NC_007793.1 subunit B of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in the case of S. meliloti it was proved to be involved specifically with K+ transport; putative monovalent cation/H+ antiporter subunit B 931696 mnhB 3915161 mnhB Staphylococcus aureus subsp. aureus USA300_FPR3757 putative monovalent cation/H+ antiporter subunit B YP_493554.1 931268 R 451515 CDS YP_493555.1 87161358 3912875 complement(931689..934094) 1 NC_007793.1 subunit A of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; monovalent cation/H+ antiporter subunit A 934094 mnhA 3912875 mnhA Staphylococcus aureus subsp. aureus USA300_FPR3757 monovalent cation/H+ antiporter subunit A YP_493555.1 931689 R 451515 CDS YP_493556.1 87162348 3913832 complement(934225..934608) 1 NC_007793.1 hypothetical protein 934608 3913832 SAUSA300_0856 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493556.1 934225 R 451515 CDS YP_493557.1 87160352 3915127 934672..935265 1 NC_007793.1 identified by match to protein family HMM PF00160; hypothetical protein 935265 3915127 SAUSA300_0857 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493557.1 934672 D 451515 CDS YP_493558.1 87160497 3915087 935714..936058 1 NC_007793.1 identified by match to protein family HMM PF00575; hypothetical protein 936058 3915087 SAUSA300_0858 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493558.1 935714 D 451515 CDS YP_493559.1 87161092 3914298 936420..937547 1 NC_007793.1 identified by match to protein family HMM PF00724; NADH-dependent flavin oxidoreductase 937547 3914298 SAUSA300_0859 Staphylococcus aureus subsp. aureus USA300_FPR3757 NADH-dependent flavin oxidoreductase YP_493559.1 936420 D 451515 CDS YP_493560.1 87162047 3914323 937855..939045 1 NC_007793.1 identified by match to protein family HMM PF00202; match to protein family HMM TIGR01885; ornithine--oxo-acid transaminase 939045 rocD 3914323 rocD Staphylococcus aureus subsp. aureus USA300_FPR3757 ornithine--oxo-acid transaminase YP_493560.1 937855 D 451515 CDS YP_493561.1 87161475 3914066 939154..940398 1 NC_007793.1 identified by match to protein family HMM PF00208; match to protein family HMM PF02812; NAD-specific glutamate dehydrogenase 940398 gudB 3914066 gudB Staphylococcus aureus subsp. aureus USA300_FPR3757 NAD-specific glutamate dehydrogenase YP_493561.1 939154 D 451515 CDS YP_493562.1 87160899 3915150 complement(940901..941830) 1 NC_007793.1 identified by match to protein family HMM PF03009; glycerophosphoryl diester phosphodiesterase 941830 glpQ 3915150 glpQ Staphylococcus aureus subsp. aureus USA300_FPR3757 glycerophosphoryl diester phosphodiesterase YP_493562.1 940901 R 451515 CDS YP_493563.1 87160332 3915407 complement(942072..943451) 1 NC_007793.1 catalyzes the formation of arginine from (N-L-arginino)succinate; argininosuccinate lyase 943451 argH 3915407 argH Staphylococcus aureus subsp. aureus USA300_FPR3757 argininosuccinate lyase YP_493563.1 942072 R 451515 CDS YP_493564.1 87160547 3914027 complement(943441..944646) 1 NC_007793.1 catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming; argininosuccinate synthase 944646 argG 3914027 argG Staphylococcus aureus subsp. aureus USA300_FPR3757 argininosuccinate synthase YP_493564.1 943441 R 451515 CDS YP_493565.1 87161297 3914716 944997..946328 1 NC_007793.1 functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family; glucose-6-phosphate isomerase 946328 pgi 3914716 pgi Staphylococcus aureus subsp. aureus USA300_FPR3757 glucose-6-phosphate isomerase YP_493565.1 944997 D 451515 CDS YP_493566.1 87160382 3912808 946653..947228 1 NC_007793.1 hypothetical protein 947228 3912808 SAUSA300_0866 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493566.1 946653 D 451515 CDS YP_493567.1 87161122 3914348 947233..947757 1 NC_007793.1 identified by match to protein family HMM PF00717; match to protein family HMM TIGR02227; signal peptidase IA 947757 spsA 3914348 spsA Staphylococcus aureus subsp. aureus USA300_FPR3757 signal peptidase IA YP_493567.1 947233 D 451515 CDS YP_493568.1 87160107 3913370 947881..948348 1 NC_007793.1 identified by match to protein family HMM PF00717; match to protein family HMM TIGR02227; signal peptidase IB 948348 spsB 3913370 spsB Staphylococcus aureus subsp. aureus USA300_FPR3757 signal peptidase IB YP_493568.1 947881 D 451515 CDS YP_493569.1 87161934 3914594 948508..951984 1 NC_007793.1 identified by match to protein family HMM TIGR02773; exonuclease RexB 951984 rexB 3914594 rexB Staphylococcus aureus subsp. aureus USA300_FPR3757 exonuclease RexB YP_493569.1 948508 D 451515 CDS YP_493570.1 87161998 3914895 951985..955638 1 NC_007793.1 identified by match to protein family HMM PF00580; match to protein family HMM TIGR02785; exonuclease RexA 955638 rexA 3914895 rexA Staphylococcus aureus subsp. aureus USA300_FPR3757 exonuclease RexA YP_493570.1 951985 D 451515 CDS YP_493571.1 87161439 3914112 955804..956706 1 NC_007793.1 identified by match to protein family HMM PF01557; hypothetical protein 956706 3914112 SAUSA300_0871 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493571.1 955804 D 451515 CDS YP_493572.1 87161619 3913474 957035..957424 1 NC_007793.1 identified by match to protein family HMM PF07457; hypothetical protein 957424 3913474 SAUSA300_0872 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493572.1 957035 D 451515 CDS YP_493573.1 87161053 3912763 complement(957595..958911) 1 NC_007793.1 NADPH-dependent; catalyzes the reduction of coenzyme A disulfide; coenzyme A disulfide reductase 958911 cdr 3912763 cdr Staphylococcus aureus subsp. aureus USA300_FPR3757 coenzyme A disulfide reductase YP_493573.1 957595 R 451515 CDS YP_493574.1 87162380 3913533 complement(958963..959787) 1 NC_007793.1 identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484; hypothetical protein 959787 3913533 SAUSA300_0874 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493574.1 958963 R 451515 CDS YP_493575.1 87161816 3914652 959943..960209 1 NC_007793.1 identified by match to protein family HMM PF01883; hypothetical protein 960209 3914652 SAUSA300_0875 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493575.1 959943 D 451515 CDS YP_493576.1 87160550 3913505 960756..962570 1 NC_007793.1 identified by match to protein family HMM PF01757; hypothetical protein 962570 3913505 SAUSA300_0876 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493576.1 960756 D 451515 CDS YP_493577.1 87160081 3913305 962773..965382 1 NC_007793.1 identified by match to protein family HMM PF00004; match to protein family HMM PF02861; match to protein family HMM PF07724; match to protein family HMM PF07728; chaperone clpB 965382 clpB 3913305 clpB Staphylococcus aureus subsp. aureus USA300_FPR3757 chaperone clpB YP_493577.1 962773 D 451515 CDS YP_493578.1 87160854 3913400 complement(965441..966310) 1 NC_007793.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator 966310 3913400 SAUSA300_0878 Staphylococcus aureus subsp. aureus USA300_FPR3757 LysR family transcriptional regulator YP_493578.1 965441 R 451515 CDS YP_493579.1 87160295 3914531 966420..967565 1 NC_007793.1 identified by match to protein family HMM PF00682; isopropylmalate synthase-like protein 967565 3914531 SAUSA300_0879 Staphylococcus aureus subsp. aureus USA300_FPR3757 isopropylmalate synthase-like protein YP_493579.1 966420 D 451515 CDS YP_493580.1 87161016 3913932 967549..968190 1 NC_007793.1 identified by match to protein family HMM PF01300; hypothetical protein 968190 3913932 SAUSA300_0880 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493580.1 967549 D 451515 CDS YP_493581.1 87160454 3913055 968183..969301 1 NC_007793.1 hypothetical protein 969301 3913055 SAUSA300_0881 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493581.1 968183 D 451515 CDS YP_493582.1 87162199 3914842 969285..969800 1 NC_007793.1 identified by match to protein family HMM TIGR00481; hypothetical protein 969800 3914842 SAUSA300_0882 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493582.1 969285 D 451515 CDS YP_493583.1 87161594 3914378 970111..970545 1 NC_007793.1 identified by match to protein family HMM PF03642; putative surface protein 970545 3914378 SAUSA300_0883 Staphylococcus aureus subsp. aureus USA300_FPR3757 putative surface protein YP_493583.1 970111 D 451515 CDS YP_493584.1 87160627 3915062 complement(970802..970987) 1 NC_007793.1 hypothetical protein 970987 3915062 SAUSA300_0884 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493584.1 970802 R 451515 CDS YP_493585.1 87160078 3913302 971282..972223 1 NC_007793.1 FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-(acyl carrier protein) synthase III 972223 fabH 3913302 fabH Staphylococcus aureus subsp. aureus USA300_FPR3757 3-oxoacyl-(acyl carrier protein) synthase III YP_493585.1 971282 D 451515 CDS YP_493586.1 87161803 3914046 972235..973479 1 NC_007793.1 identified by match to protein family HMM PF00109; match to protein family HMM PF02801; 3-oxoacyl-(acyl-carrier-protein) synthase II 973479 fabF 3914046 fabF Staphylococcus aureus subsp. aureus USA300_FPR3757 3-oxoacyl-(acyl-carrier-protein) synthase II YP_493586.1 972235 D 451515 CDS YP_493587.1 87161240 3914794 974149..975075 1 NC_007793.1 identified by match to protein family HMM PF00528; oligopeptide ABC transporter permease 975075 oppB 3914794 oppB Staphylococcus aureus subsp. aureus USA300_FPR3757 oligopeptide ABC transporter permease YP_493587.1 974149 D 451515 CDS YP_493588.1 87160346 3915121 975075..976145 1 NC_007793.1 identified by match to protein family HMM PF00528; oligopeptide ABC transporter permease 976145 oppC 3915121 oppC Staphylococcus aureus subsp. aureus USA300_FPR3757 oligopeptide ABC transporter permease YP_493588.1 975075 D 451515 CDS YP_493589.1 87162358 3914207 976162..977244 1 NC_007793.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR01727; oligopeptide ABC transporter ATP-binding protein 977244 oppD 3914207 oppD Staphylococcus aureus subsp. aureus USA300_FPR3757 oligopeptide ABC transporter ATP-binding protein YP_493589.1 976162 D 451515 CDS YP_493590.1 87161590 3914374 977234..978175 1 NC_007793.1 identified by match to protein family HMM PF00005; oligopeptide ABC transporter ATP-binding protein 978175 oppF 3914374 oppF Staphylococcus aureus subsp. aureus USA300_FPR3757 oligopeptide ABC transporter ATP-binding protein YP_493590.1 977234 D 451515 CDS YP_493591.1 87162140 3914687 978194..979849 1 NC_007793.1 identified by match to protein family HMM PF00496; oligopeptide ABC transporter substrate-binding protein 979849 oppA 3914687 oppA Staphylococcus aureus subsp. aureus USA300_FPR3757 oligopeptide ABC transporter substrate-binding protein YP_493591.1 978194 D 451515 CDS YP_493592.1 87160406 3912851 980061..981776 1 NC_007793.1 identified by match to protein family HMM PF00496; oligopeptide ABC transporter oligopeptide-binding protein 981776 oppA 3912851 oppA Staphylococcus aureus subsp. aureus USA300_FPR3757 oligopeptide ABC transporter oligopeptide-binding protein YP_493592.1 980061 D 451515 CDS YP_493593.1 87161007 3913573 981827..982813 1 NC_007793.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR01727; oligopeptide ABC transporter ATP-binding protein 982813 oppF 3913573 oppF Staphylococcus aureus subsp. aureus USA300_FPR3757 oligopeptide ABC transporter ATP-binding protein YP_493593.1 981827 D 451515 CDS YP_493594.1 87161030 3913946 982816..983796 1 NC_007793.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR01727; oligopeptide ABC transporter ATP-binding protein 983796 oppD 3913946 oppD Staphylococcus aureus subsp. aureus USA300_FPR3757 oligopeptide ABC transporter ATP-binding protein YP_493594.1 982816 D 451515 CDS YP_493595.1 87161748 3913893 983789..984751 1 NC_007793.1 identified by match to protein family HMM PF00528; oligopeptide ABC transporter permease 984751 oppB 3913893 oppB Staphylococcus aureus subsp. aureus USA300_FPR3757 oligopeptide ABC transporter permease YP_493595.1 983789 D 451515 CDS YP_493596.1 87159930 3914976 984763..985644 1 NC_007793.1 identified by match to protein family HMM PF00528; oligopeptide ABC transporter permease 985644 oppC 3914976 oppC Staphylococcus aureus subsp. aureus USA300_FPR3757 oligopeptide ABC transporter permease YP_493596.1 984763 D 451515 CDS YP_493597.1 87160620 3913281 complement(985686..986675) 1 NC_007793.1 catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase 986675 trpS 3913281 trpS Staphylococcus aureus subsp. aureus USA300_FPR3757 tryptophanyl-tRNA synthetase YP_493597.1 985686 R 451515 CDS YP_493598.1 87160842 3913388 986970..987365 1 NC_007793.1 the anti-alpha factor Spx interacts with RNA polymerase alpha subunit C-terminal domain in a region that interacts with the sigma 70 subunit and may interfere with activation of promoters; in Bacillus subtilis this protein is a substrate for ClpXP protease; blocks transcription of the competence regulatory gene encoded by the srf operon; regulates a number of genes involved in thiol homeostasis including trxA and trxB; monomeric member of ArsC family of proteins; does not bind DNA; contains a disulfide bond between C10 and C13 which may sense disulfide stress; transcriptional regulator Spx 987365 spxA 3913388 spxA Staphylococcus aureus subsp. aureus USA300_FPR3757 transcriptional regulator Spx YP_493598.1 986970 D 451515 CDS YP_493599.1 87161176 3914750 987736..988455 1 NC_007793.1 enables recognition and targeting of proteins for proteolysis, involved in negative regulation of competence; adaptor protein 988455 3914750 SAUSA300_0899 Staphylococcus aureus subsp. aureus USA300_FPR3757 adaptor protein YP_493599.1 987736 D 451515 CDS YP_493600.1 87160302 3914538 988576..988833 1 NC_007793.1 authenticated frameshift; putative competence protein 988833 3914538 SAUSA300_0900 Staphylococcus aureus subsp. aureus USA300_FPR3757 putative competence protein YP_493600.1 988576 D 451515 CDS YP_493601.1 87160670 3915047 988860..989561 1 NC_007793.1 authenticated frameshift; identified by match to protein family HMM PF06054; putative competence protein 989561 3915047 SAUSA300_0901 Staphylococcus aureus subsp. aureus USA300_FPR3757 putative competence protein YP_493601.1 988860 D 451515 CDS YP_493602.1 87161444 3914117 989609..991417 1 NC_007793.1 identified by match to protein family HMM PF01432; match to protein family HMM TIGR00181; oligoendopeptidase F 991417 pepF 3914117 pepF Staphylococcus aureus subsp. aureus USA300_FPR3757 oligoendopeptidase F YP_493602.1 989609 D 451515 CDS YP_493603.1 87161245 3913854 complement(991877..992683) 1 NC_007793.1 hypothetical protein 992683 3913854 SAUSA300_0903 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493603.1 991877 R 451515 CDS YP_493604.1 87161957 3913714 complement(992706..993071) 1 NC_007793.1 identified by match to protein family HMM PF01152; hypothetical protein 993071 3913714 SAUSA300_0904 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493604.1 992706 R 451515 CDS YP_493605.1 87161031 3913947 complement(993175..993768) 1 NC_007793.1 identified by match to protein family HMM PF01928; hypothetical protein 993768 3913947 SAUSA300_0905 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493605.1 993175 R 451515 CDS YP_493606.1 87161808 3914644 993954..994301 1 NC_007793.1 hypothetical protein 994301 3914644 SAUSA300_0906 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493606.1 993954 D 451515 CDS YP_493607.1 87161055 3912765 994318..994953 1 NC_007793.1 identified by match to protein family HMM PF04607; GTP pyrophosphokinase 994953 3912765 SAUSA300_0907 Staphylococcus aureus subsp. aureus USA300_FPR3757 GTP pyrophosphokinase YP_493607.1 994318 D 451515 CDS YP_493608.1 87160512 3914724 994970..995779 1 NC_007793.1 catalyzes the phosphorylation of NAD to NADP; inorganic polyphosphate/ATP-NAD kinase 995779 ppnK 3914724 ppnK Staphylococcus aureus subsp. aureus USA300_FPR3757 inorganic polyphosphate/ATP-NAD kinase YP_493608.1 994970 D 451515 CDS YP_493609.1 87161458 3914049 995776..996630 1 NC_007793.1 identified by match to protein family HMM PF00849; match to protein family HMM TIGR00005; RluA family pseudouridine synthase 996630 3914049 SAUSA300_0909 Staphylococcus aureus subsp. aureus USA300_FPR3757 RluA family pseudouridine synthase YP_493609.1 995776 D 451515 CDS YP_493610.1 87160433 3912936 996651..998036 1 NC_007793.1 identified by match to protein family HMM PF00571; match to protein family HMM PF01769; match to protein family HMM PF03448; match to protein family HMM TIGR00400; magnesium transporter 998036 mgtE 3912936 mgtE Staphylococcus aureus subsp. aureus USA300_FPR3757 magnesium transporter YP_493610.1 996651 D 451515 CDS YP_493611.1 87160688 3914182 998046..999890 1 NC_007793.1 identified by match to protein family HMM PF00999; match to protein family HMM PF02080; match to protein family HMM PF02254; transporter, monovalent cation:proton antiporter-2 (CPA2) family protein 999890 3914182 SAUSA300_0911 Staphylococcus aureus subsp. aureus USA300_FPR3757 transporter, monovalent cation:proton antiporter-2 (CPA2) family protein YP_493611.1 998046 D 451515 CDS YP_493612.1 87161426 3914075 1000168..1000938 1 NC_007793.1 Catalyzes a key regulatory step in fatty acid biosynthesis; enoyl-(acyl carrier protein) reductase 1000938 3914075 SAUSA300_0912 Staphylococcus aureus subsp. aureus USA300_FPR3757 enoyl-(acyl carrier protein) reductase YP_493612.1 1000168 D 451515 CDS YP_493613.1 87161559 3915174 complement(1001133..1002218) 1 NC_007793.1 identified by match to protein family HMM PF01594; hypothetical protein 1002218 3915174 SAUSA300_0913 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493613.1 1001133 R 451515 CDS YP_493614.1 87162247 3914872 1002560..1004128 1 NC_007793.1 identified by match to protein family HMM PF00324; match to protein family HMM PF01235; match to protein family HMM TIGR00835; sodium:alanine symporter family protein 1004128 3914872 SAUSA300_0914 Staphylococcus aureus subsp. aureus USA300_FPR3757 sodium:alanine symporter family protein YP_493614.1 1002560 D 451515 CDS YP_493615.1 87160258 3913660 1004270..1005028 1 NC_007793.1 identified by match to protein family HMM PF00756; hypothetical protein 1005028 3913660 SAUSA300_0915 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493615.1 1004270 D 451515 CDS YP_493616.1 87161038 3912883 1005222..1005731 1 NC_007793.1 similar to 2'-5' RNA ligase; hypothetical protein 1005731 3912883 SAUSA300_0916 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493616.1 1005222 D 451515 CDS YP_493617.1 87160445 3912948 complement(1005844..1007052) 1 NC_007793.1 identified by match to protein family HMM PF07690; hypothetical protein 1007052 3912948 SAUSA300_0917 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493617.1 1005844 R 451515 CDS YP_493618.1 87161032 3912877 complement(1007012..1008187) 1 NC_007793.1 processive; catalyzes the formation of mono-, di- and tri-glucosyldiacylglycerol by the progressive transfer of glucosyl residues to diacylglycerol; involved in the formation of membrane glycolipids; diacylglycerol glucosyltransferase 1008187 3912877 SAUSA300_0918 Staphylococcus aureus subsp. aureus USA300_FPR3757 diacylglycerol glucosyltransferase YP_493618.1 1007012 R 451515 CDS YP_493619.1 87161291 3914710 1008620..1010101 1 NC_007793.1 involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of lysine to UDP-N-acetylmuramoyl-L-alanyl-D-glutamate forming UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-L-lysine; UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase 1010101 murE 3914710 murE Staphylococcus aureus subsp. aureus USA300_FPR3757 UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase YP_493619.1 1008620 D 451515 CDS YP_493620.1 87160621 3913282 1010094..1010345 1 NC_007793.1 hypothetical protein 1010345 3913282 SAUSA300_0920 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493620.1 1010094 D 451515 CDS YP_493621.1 87161789 3914032 1010345..1011907 1 NC_007793.1 stimulates the release of release factors 1 and 2 from the ribosome after hydrolysis of the ester bond in peptidyl-tRNA has occurred; GDP/GTP-binding protein; peptide chain release factor 3 1011907 prfC 3914032 prfC Staphylococcus aureus subsp. aureus USA300_FPR3757 peptide chain release factor 3 YP_493621.1 1010345 D 451515 CDS YP_493622.1 87162202 3914845 1012209..1013012 1 NC_007793.1 identified by match to protein family HMM PF03741; TerC family membrane protein 1013012 3914845 SAUSA300_0922 Staphylococcus aureus subsp. aureus USA300_FPR3757 TerC family membrane protein YP_493622.1 1012209 D 451515 CDS YP_493623.1 87159941 3914987 1013246..1015555 1 NC_007793.1 identified by match to protein family HMM PF00089; serine protease 1015555 htrA 3914987 htrA Staphylococcus aureus subsp. aureus USA300_FPR3757 serine protease YP_493623.1 1013246 D 451515 CDS YP_493624.1 87160609 3913270 1015572..1016930 1 NC_007793.1 identified by match to protein family HMM PF02386; sodium transport family protein 1016930 3913270 SAUSA300_0924 Staphylococcus aureus subsp. aureus USA300_FPR3757 sodium transport family protein YP_493624.1 1015572 D 451515 CDS YP_493625.1 87161690 3914455 1017069..1018580 1 NC_007793.1 identified by match to protein family HMM PF02872; 5' nucleotidase family protein 1018580 3914455 SAUSA300_0925 Staphylococcus aureus subsp. aureus USA300_FPR3757 5' nucleotidase family protein YP_493625.1 1017069 D 451515 CDS YP_493626.1 87162400 3913923 complement(1019067..1019597) 1 NC_007793.1 identified by match to protein family HMM PF06338; competence transcription factor 1019597 comK 3913923 comK Staphylococcus aureus subsp. aureus USA300_FPR3757 competence transcription factor YP_493626.1 1019067 R 451515 CDS YP_493627.1 87162415 3915262 1019846..1020064 1 NC_007793.1 hypothetical protein 1020064 3915262 SAUSA300_0929 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493627.1 1019846 D 451515 CDS YP_493628.1 87160642 3915077 complement(1020145..1021131) 1 NC_007793.1 identified by match to protein family HMM PF03099; match to protein family HMM TIGR00545; lipoate-protein ligase A family protein 1021131 3915077 SAUSA300_0930 Staphylococcus aureus subsp. aureus USA300_FPR3757 lipoate-protein ligase A family protein YP_493628.1 1020145 R 451515 CDS YP_493629.1 87161221 3912796 1021330..1021506 1 NC_007793.1 hypothetical protein 1021506 3912796 SAUSA300_0931 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493629.1 1021330 D 451515 CDS YP_493630.1 87162307 3913616 1021521..1022123 1 NC_007793.1 identified by match to protein family HMM PF02517; hypothetical protein 1022123 3913616 SAUSA300_0932 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493630.1 1021521 D 451515 CDS YP_493631.1 87161754 3913899 1022394..1022501 1 NC_007793.1 hypothetical protein 1022501 3913899 SAUSA300_0933 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493631.1 1022394 D 451515 CDS YP_493632.1 87160874 3914146 1023467..1025431 1 NC_007793.1 identified by match to protein family HMM TIGR01654; membrane protein 1025431 3914146 SAUSA300_0934 Staphylococcus aureus subsp. aureus USA300_FPR3757 membrane protein YP_493632.1 1023467 D 451515 CDS YP_493633.1 87160932 3914370 1025434..1025754 1 NC_007793.1 identified by match to protein family HMM TIGR01655; hypothetical protein 1025754 3914370 SAUSA300_0935 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493633.1 1025434 D 451515 CDS YP_493634.1 87160221 3913759 1025751..1026392 1 NC_007793.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 1026392 3913759 SAUSA300_0936 Staphylococcus aureus subsp. aureus USA300_FPR3757 ABC transporter ATP-binding protein YP_493634.1 1025751 D 451515 CDS YP_493635.1 87162408 3915255 complement(1026480..1026770) 1 NC_007793.1 hypothetical protein 1026770 3915255 SAUSA300_0937 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493635.1 1026480 R 451515 CDS YP_493636.1 87161938 3914598 1027049..1027336 1 NC_007793.1 hypothetical protein 1027336 3914598 SAUSA300_0938 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493636.1 1027049 D 451515 CDS YP_493637.1 87160827 3913548 1027342..1028823 1 NC_007793.1 identified by match to protein family HMM PF00534; glycosyl transferase, group 1 family protein 1028823 3913548 SAUSA300_0939 Staphylococcus aureus subsp. aureus USA300_FPR3757 glycosyl transferase, group 1 family protein YP_493637.1 1027342 D 451515 CDS YP_493638.1 87160005 3912916 complement(1028912..1029268) 1 NC_007793.1 identified by match to protein family HMM PF07681; hypothetical protein 1029268 3912916 SAUSA300_0940 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493638.1 1028912 R 451515 CDS YP_493639.1 87162284 3915324 1029841..1030704 1 NC_007793.1 identified by match to protein family HMM PF01497; putative ferrichrome ABC transporter 1030704 3915324 SAUSA300_0941 Staphylococcus aureus subsp. aureus USA300_FPR3757 putative ferrichrome ABC transporter YP_493639.1 1029841 D 451515 CDS YP_493640.1 87161181 3914755 complement(1030945..1031235) 1 NC_007793.1 identified by match to protein family HMM PF05154; hypothetical protein 1031235 3914755 SAUSA300_0942 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493640.1 1030945 R 451515 CDS YP_493641.1 87162084 3914627 1031379..1031876 1 NC_007793.1 identified by match to protein family HMM PF00583; acetyltransferase 1031876 3914627 SAUSA300_0943 Staphylococcus aureus subsp. aureus USA300_FPR3757 acetyltransferase YP_493641.1 1031379 D 451515 CDS YP_493642.1 87160260 3913662 complement(1031928..1032866) 1 NC_007793.1 catalyzes the formation of dimethylmenaquinone from 1,4-dihydroxy-2-naphthoate and octaprenyl diphosphate; 1,4-dihydroxy-2-naphthoate octaprenyltransferase 1032866 menA 3913662 menA Staphylococcus aureus subsp. aureus USA300_FPR3757 1,4-dihydroxy-2-naphthoate octaprenyltransferase YP_493642.1 1031928 R 451515 CDS YP_493643.1 87161685 3914450 1033198..1034409 1 NC_007793.1 identified by match to protein family HMM PF00425; match to protein family HMM TIGR00543; isochorismate synthase family protein 1034409 3914450 SAUSA300_0945 Staphylococcus aureus subsp. aureus USA300_FPR3757 isochorismate synthase family protein YP_493643.1 1033198 D 451515 CDS YP_493644.1 87162387 3913540 1034396..1036069 1 NC_007793.1 identified by match to protein family HMM PF02776; match to protein family HMM TIGR00173; 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylic acid synthase/2-oxoglutarate decarboxylase 1036069 menD 3913540 menD Staphylococcus aureus subsp. aureus USA300_FPR3757 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylic acid synthase/2-oxoglutarate decarboxylase YP_493644.1 1034396 D 451515 CDS YP_493645.1 87160817 3913049 1036056..1036859 1 NC_007793.1 identified by match to protein family HMM PF00561; alpha/beta fold family hydrolase 1036859 3913049 SAUSA300_0947 Staphylococcus aureus subsp. aureus USA300_FPR3757 alpha/beta fold family hydrolase YP_493645.1 1036056 D 451515 CDS YP_493646.1 87161450 3914123 1036852..1037673 1 NC_007793.1 catalyzes the formation of 1,4-dihydroxy-2-naphthoate from O-succinylbenzoyl-CoA; naphthoate synthase 1037673 menB 3914123 menB Staphylococcus aureus subsp. aureus USA300_FPR3757 naphthoate synthase YP_493646.1 1036852 D 451515 CDS YP_493647.1 87160276 3913678 complement(1037912..1038241) 1 NC_007793.1 cysteine protease 1038241 sspC 3913678 sspC Staphylococcus aureus subsp. aureus USA300_FPR3757 cysteine protease YP_493647.1 1037912 R 451515 CDS YP_493648.1 87161340 3912857 complement(1038279..1039460) 1 NC_007793.1 cysteine protease 1039460 sspB 3912857 sspB Staphylococcus aureus subsp. aureus USA300_FPR3757 cysteine protease YP_493648.1 1038279 R 451515 CDS YP_493649.1 87160772 3913747 complement(1039542..1040552) 1 NC_007793.1 identified by match to protein family HMM PF00089; V8 protease 1040552 sspA 3913747 sspA Staphylococcus aureus subsp. aureus USA300_FPR3757 V8 protease YP_493649.1 1039542 R 451515 CDS YP_493650.1 87160593 3915212 complement(1041080..1042234) 1 NC_007793.1 identified by match to protein family HMM PF00155; aminotransferase, class I 1042234 3915212 SAUSA300_0952 Staphylococcus aureus subsp. aureus USA300_FPR3757 aminotransferase, class I YP_493650.1 1041080 R 451515 CDS YP_493651.1 87160010 3912921 complement(1042430..1043440) 1 NC_007793.1 identified by match to protein family HMM PF01757; hypothetical protein 1043440 3912921 SAUSA300_0953 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493651.1 1042430 R 451515 CDS YP_493652.1 87162328 3913462 1043593..1044012 1 NC_007793.1 identified by match to protein family HMM PF01047; MarR family transcriptional regulator 1044012 3913462 SAUSA300_0954 Staphylococcus aureus subsp. aureus USA300_FPR3757 MarR family transcriptional regulator YP_493652.1 1043593 D 451515 CDS YP_493653.1 87162026 3914283 complement(1044219..1047989) 1 NC_007793.1 identified by match to protein family HMM PF01510; match to protein family HMM PF01832; autolysin 1047989 atl 3914283 atl Staphylococcus aureus subsp. aureus USA300_FPR3757 autolysin YP_493653.1 1044219 R 451515 CDS YP_493654.1 87161472 3914063 complement(1048217..1048651) 1 NC_007793.1 identified by match to protein family HMM PF00583; hypothetical protein 1048651 3914063 SAUSA300_0956 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493654.1 1048217 R 451515 CDS YP_493655.1 87160584 3915010 complement(1048806..1049276) 1 NC_007793.1 hypothetical protein 1049276 3915010 SAUSA300_0957 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493655.1 1048806 R 451515 CDS YP_493656.1 87160128 3912981 complement(1049324..1050541) 1 NC_007793.1 identified by match to protein family HMM PF03816; match to protein family HMM TIGR00350; hypothetical protein 1050541 3912981 SAUSA300_0958 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493656.1 1049324 R 451515 CDS YP_493657.1 87160715 3912830 1050992..1052185 1 NC_007793.1 identified by match to protein family HMM PF00144; fmt protein 1052185 fmt 3912830 fmt Staphylococcus aureus subsp. aureus USA300_FPR3757 fmt protein YP_493657.1 1050992 D 451515 CDS YP_493658.1 87161285 3914704 complement(1052722..1053000) 1 NC_007793.1 identified by match to protein family HMM PF03626; quinol oxidase, subunit IV 1053000 qoxD 3914704 qoxD Staphylococcus aureus subsp. aureus USA300_FPR3757 quinol oxidase, subunit IV YP_493658.1 1052722 R 451515 CDS YP_493659.1 87161041 3912886 complement(1053009..1053614) 1 NC_007793.1 identified by match to protein family HMM PF00510; quinol oxidase, subunit III 1053614 qoxC 3912886 qoxC Staphylococcus aureus subsp. aureus USA300_FPR3757 quinol oxidase, subunit III YP_493659.1 1053009 R 451515 CDS YP_493660.1 87161277 3915248 complement(1053604..1055592) 1 NC_007793.1 identified by match to protein family HMM PF00115; quinol oxidase, subunit I 1055592 qoxB 3915248 qoxB Staphylococcus aureus subsp. aureus USA300_FPR3757 quinol oxidase, subunit I YP_493660.1 1053604 R 451515 CDS YP_493661.1 87161989 3914886 complement(1055592..1056692) 1 NC_007793.1 identified by match to protein family HMM PF00116; match to protein family HMM PF02790; match to protein family HMM PF06481; match to protein family HMM TIGR01432; quinol oxidase, subunit II 1056692 qoxA 3914886 qoxA Staphylococcus aureus subsp. aureus USA300_FPR3757 quinol oxidase, subunit II YP_493661.1 1055592 R 451515 CDS YP_493662.1 87160154 3913124 complement(1057264..1057581) 1 NC_007793.1 hypothetical protein 1057581 3913124 SAUSA300_0964 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493662.1 1057264 R 451515 CDS YP_493663.1 87161569 3915185 complement(1058386..1059246) 1 NC_007793.1 catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase 1059246 folD 3915185 folD Staphylococcus aureus subsp. aureus USA300_FPR3757 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase YP_493663.1 1058386 R 451515 CDS YP_493664.1 87162294 3913603 1059510..1059929 1 NC_007793.1 identified by match to protein family HMM PF00731; match to protein family HMM TIGR01162; phosphoribosylaminoimidazole carboxylase, catalytic subunit 1059929 purE 3913603 purE Staphylococcus aureus subsp. aureus USA300_FPR3757 phosphoribosylaminoimidazole carboxylase, catalytic subunit YP_493664.1 1059510 D 451515 CDS YP_493665.1 87160366 3913240 1059916..1061040 1 NC_007793.1 With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway; phosphoribosylaminoimidazole carboxylase ATPase subunit 1061040 purK 3913240 purK Staphylococcus aureus subsp. aureus USA300_FPR3757 phosphoribosylaminoimidazole carboxylase ATPase subunit YP_493665.1 1059916 D 451515 CDS YP_493666.1 87160031 3913352 1061044..1061748 1 NC_007793.1 catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; phosphoribosylaminoimidazole-succinocarboxamide synthase 1061748 purC 3913352 purC Staphylococcus aureus subsp. aureus USA300_FPR3757 phosphoribosylaminoimidazole-succinocarboxamide synthase YP_493666.1 1061044 D 451515 CDS YP_493667.1 87161595 3914379 1061748..1062011 1 NC_007793.1 identified by match to protein family HMM PF02700; match to protein family HMM TIGR00302; phosphoribosylformylglycinamidine synthase 1062011 purS 3914379 purS Staphylococcus aureus subsp. aureus USA300_FPR3757 phosphoribosylformylglycinamidine synthase YP_493667.1 1061748 D 451515 CDS YP_493668.1 87161156 3914501 1062013..1062684 1 NC_007793.1 catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase I 1062684 purQ 3914501 purQ Staphylococcus aureus subsp. aureus USA300_FPR3757 phosphoribosylformylglycinamidine synthase I YP_493668.1 1062013 D 451515 CDS YP_493669.1 87161666 3913168 1062677..1064866 1 NC_007793.1 catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase II 1064866 purL 3913168 purL Staphylococcus aureus subsp. aureus USA300_FPR3757 phosphoribosylformylglycinamidine synthase II YP_493669.1 1062677 D 451515 CDS YP_493670.1 87161091 3914297 1064845..1066329 1 NC_007793.1 Catalyzes first step of the de novo purine nucleotide biosynthetic pathway; amidophosphoribosyltransferase 1066329 purF 3914297 purF Staphylococcus aureus subsp. aureus USA300_FPR3757 amidophosphoribosyltransferase YP_493670.1 1064845 D 451515 CDS YP_493671.1 87159901 3914947 1066322..1067350 1 NC_007793.1 catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis; phosphoribosylaminoimidazole synthetase 1067350 purM 3914947 purM Staphylococcus aureus subsp. aureus USA300_FPR3757 phosphoribosylaminoimidazole synthetase YP_493671.1 1066322 D 451515 CDS YP_493672.1 87161914 3913005 1067353..1067919 1 NC_007793.1 identified by match to protein family HMM PF00551; match to protein family HMM TIGR00639; phosphoribosylglycinamide formyltransferase 1067919 purN 3913005 purN Staphylococcus aureus subsp. aureus USA300_FPR3757 phosphoribosylglycinamide formyltransferase YP_493672.1 1067353 D 451515 CDS YP_493673.1 87161369 3914768 1067934..1069412 1 NC_007793.1 involved in de novo purine biosynthesis; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 1069412 purH 3914768 purH Staphylococcus aureus subsp. aureus USA300_FPR3757 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase YP_493673.1 1067934 D 451515 CDS YP_493674.1 87160769 3913744 1069434..1070681 1 NC_007793.1 catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis; phosphoribosylamine--glycine ligase 1070681 purD 3913744 purD Staphylococcus aureus subsp. aureus USA300_FPR3757 phosphoribosylamine--glycine ligase YP_493674.1 1069434 D 451515 CDS YP_493675.1 87162166 3915197 complement(1070946..1071752) 1 NC_007793.1 identified by match to protein family HMM PF02361; cobalt transport family protein 1071752 3915197 SAUSA300_0977 Staphylococcus aureus subsp. aureus USA300_FPR3757 cobalt transport family protein YP_493675.1 1070946 R 451515 CDS YP_493676.1 87162148 3914695 complement(1071745..1073145) 1 NC_007793.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 1073145 3914695 SAUSA300_0978 Staphylococcus aureus subsp. aureus USA300_FPR3757 ABC transporter ATP-binding protein YP_493676.1 1071745 R 451515 CDS YP_493677.1 87160000 3914428 complement(1073160..1073735) 1 NC_007793.1 hypothetical protein 1073735 3914428 SAUSA300_0979 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493677.1 1073160 R 451515 CDS YP_493678.1 87161746 3913891 1074605..1075900 1 NC_007793.1 hypothetical protein 1075900 3913891 SAUSA300_0980 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493678.1 1074605 D 451515 CDS YP_493679.1 87159894 3914940 1076325..1077497 1 NC_007793.1 hypothetical protein 1077497 3914940 SAUSA300_0981 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493679.1 1076325 D 451515 CDS YP_493680.1 87160349 3915124 1077551..1078093 1 NC_007793.1 hypothetical protein 1078093 3915124 SAUSA300_0982 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493680.1 1077551 D 451515 CDS YP_493681.1 87160965 3915360 1078247..1078513 1 NC_007793.1 identified by match to protein family HMM PF00381; match to protein family HMM TIGR01003; phosphocarrier protein HPr 1078513 ptsH 3915360 ptsH Staphylococcus aureus subsp. aureus USA300_FPR3757 phosphocarrier protein HPr YP_493681.1 1078247 D 451515 CDS YP_493682.1 87162119 3913583 1078516..1080234 1 NC_007793.1 identified by match to protein family HMM PF00391; match to protein family HMM PF02896; match to protein family HMM PF05524; match to protein family HMM TIGR01417; phosphoenolpyruvate-protein phosphotransferase 1080234 ptsI 3913583 ptsI Staphylococcus aureus subsp. aureus USA300_FPR3757 phosphoenolpyruvate-protein phosphotransferase YP_493682.1 1078516 D 451515 CDS YP_493683.1 87160272 3913674 complement(1080471..1080704) 1 NC_007793.1 identified by match to protein family HMM PF00462; hypothetical protein 1080704 3913674 SAUSA300_0985 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493683.1 1080471 R 451515 CDS YP_493684.1 87160652 3913976 1080902..1082263 1 NC_007793.1 identified by match to protein family HMM PF01654; cytochrome D ubiquinol oxidase, subunit I 1082263 3913976 SAUSA300_0986 Staphylococcus aureus subsp. aureus USA300_FPR3757 cytochrome D ubiquinol oxidase, subunit I YP_493684.1 1080902 D 451515 CDS YP_493685.1 87162392 3913915 1082260..1083279 1 NC_007793.1 cytochrome D ubiquinol oxidase, subunit II 1083279 3913915 SAUSA300_0987 Staphylococcus aureus subsp. aureus USA300_FPR3757 cytochrome D ubiquinol oxidase, subunit II YP_493685.1 1082260 D 451515 CDS YP_493686.1 87161986 3914883 1083412..1084074 1 NC_007793.1 identified by match to protein family HMM PF02080; match to protein family HMM PF02254; potassium uptake protein 1084074 trkA 3914883 trkA Staphylococcus aureus subsp. aureus USA300_FPR3757 potassium uptake protein YP_493686.1 1083412 D 451515 CDS YP_493687.1 87159956 3913843 complement(1084423..1086120) 1 NC_007793.1 identified by match to protein family HMM PF00753; match to protein family HMM PF07521; match to protein family HMM TIGR00649; hypothetical protein 1086120 3913843 SAUSA300_0989 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493687.1 1084423 R 451515 CDS YP_493688.1 87160886 3912963 complement(1086120..1086338) 1 NC_007793.1 identified by match to protein family HMM PF07288; hypothetical protein 1086338 3912963 SAUSA300_0990 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493688.1 1086120 R 451515 CDS YP_493689.1 87161441 3914114 complement(1086819..1087370) 1 NC_007793.1 cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase 1087370 def 3914114 def Staphylococcus aureus subsp. aureus USA300_FPR3757 peptide deformylase YP_493689.1 1086819 R 451515 CDS YP_493690.1 87162315 3913449 1087735..1088361 1 NC_007793.1 hypothetical protein 1088361 3913449 SAUSA300_0992 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493690.1 1087735 D 451515 CDS YP_493691.1 87160754 3913417 1088532..1089644 1 NC_007793.1 identified by match to protein family HMM PF00676; pyruvate dehydrogenase E1 component, alpha subunit 1089644 pdhA 3913417 pdhA Staphylococcus aureus subsp. aureus USA300_FPR3757 pyruvate dehydrogenase E1 component, alpha subunit YP_493691.1 1088532 D 451515 CDS YP_493692.1 87159954 3913841 1089648..1090625 1 NC_007793.1 identified by match to protein family HMM PF02779; match to protein family HMM PF02780; pyruvate dehydrogenase E1 component, beta subunit 1090625 pdhB 3913841 pdhB Staphylococcus aureus subsp. aureus USA300_FPR3757 pyruvate dehydrogenase E1 component, beta subunit YP_493692.1 1089648 D 451515 CDS YP_493693.1 87161817 3914653 1090716..1092008 1 NC_007793.1 identified by similarity to GB:CAA37630.1; match to protein family HMM PF00198; match to protein family HMM PF00364; match to protein family HMM PF02817; branched-chain alpha-keto acid dehydrogenase subunit E2 1092008 3914653 SAUSA300_0995 Staphylococcus aureus subsp. aureus USA300_FPR3757 branched-chain alpha-keto acid dehydrogenase subunit E2 YP_493693.1 1090716 D 451515 CDS YP_493694.1 87161349 3912866 1092012..1093418 1 NC_007793.1 E3 component of pyruvate complex; catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase 1093418 lpdA 3912866 lpdA Staphylococcus aureus subsp. aureus USA300_FPR3757 dihydrolipoamide dehydrogenase YP_493694.1 1092012 D 451515 CDS YP_493695.1 87161269 3915240 1093586..1093861 1 NC_007793.1 identified by match to protein family HMM PF05256; hypothetical protein 1093861 3915240 SAUSA300_0997 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493695.1 1093586 D 451515 CDS YP_493696.1 87161040 3912885 1094005..1094544 1 NC_007793.1 identified by match to protein family HMM PF01381; match to protein family HMM PF07883; hypothetical protein 1094544 3912885 SAUSA300_0998 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493696.1 1094005 D 451515 CDS YP_493697.1 87160472 3913327 1094557..1095651 1 NC_007793.1 identified by match to protein family HMM PF00005; spermidine/putrescine ABC transporter ATP-binding protein 1095651 potA 3913327 potA Staphylococcus aureus subsp. aureus USA300_FPR3757 spermidine/putrescine ABC transporter ATP-binding protein YP_493697.1 1094557 D 451515 CDS YP_493698.1 87160184 3913252 1095644..1096441 1 NC_007793.1 identified by match to protein family HMM PF00528; spermidine/putrescine ABC transporter permease 1096441 potB 3913252 potB Staphylococcus aureus subsp. aureus USA300_FPR3757 spermidine/putrescine ABC transporter permease YP_493698.1 1095644 D 451515 CDS YP_493699.1 87161547 3914674 1096447..1097256 1 NC_007793.1 identified by match to protein family HMM PF00528; spermidine/putrescine ABC transporter permease 1097256 potC 3914674 potC Staphylococcus aureus subsp. aureus USA300_FPR3757 spermidine/putrescine ABC transporter permease YP_493699.1 1096447 D 451515 CDS YP_493700.1 87160442 3912945 1097256..1098329 1 NC_007793.1 identified by match to protein family HMM PF01547; spermidine/putrescine ABC transporter spermidine/putrescine-binding protein 1098329 potD 3912945 potD Staphylococcus aureus subsp. aureus USA300_FPR3757 spermidine/putrescine ABC transporter spermidine/putrescine-binding protein YP_493700.1 1097256 D 451515 CDS YP_493701.1 87161819 3914655 1098403..1099422 1 NC_007793.1 hypothetical protein 1099422 3914655 SAUSA300_1003 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493701.1 1098403 D 451515 CDS YP_493702.1 87161546 3914672 1099705..1100124 1 NC_007793.1 hypothetical protein 1100124 3914672 SAUSA300_1004 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493702.1 1099705 D 451515 CDS YP_493703.1 87160961 3915356 complement(1100206..1101558) 1 NC_007793.1 identified by match to protein family HMM PF01566; match to protein family HMM TIGR01197; manganese transport protein MntH 1101558 3915356 SAUSA300_1005 Staphylococcus aureus subsp. aureus USA300_FPR3757 manganese transport protein MntH YP_493703.1 1100206 R 451515 CDS YP_493704.1 87160752 3913415 complement(1101742..1102356) 1 NC_007793.1 identified by match to protein family HMM PF06335; hypothetical protein 1102356 3913415 SAUSA300_1006 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493704.1 1101742 R 451515 CDS YP_493705.1 87160908 3915159 1102513..1103340 1 NC_007793.1 identified by match to protein family HMM PF00459; inositol monophosphatase family protein 1103340 3915159 SAUSA300_1007 Staphylococcus aureus subsp. aureus USA300_FPR3757 inositol monophosphatase family protein YP_493705.1 1102513 D 451515 CDS YP_493706.1 87162135 3913599 complement(1103494..1103685) 1 NC_007793.1 hypothetical protein 1103685 3913599 SAUSA300_1008 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493706.1 1103494 R 451515 CDS YP_493707.1 87159976 3914828 1103787..1105634 1 NC_007793.1 identified by match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF03144; match to protein family HMM TIGR00231; match to protein family HMM TIGR01394; GTP-binding protein 1105634 typA 3914828 typA Staphylococcus aureus subsp. aureus USA300_FPR3757 GTP-binding protein YP_493707.1 1103787 D 451515 CDS YP_493708.1 87159988 3914416 complement(1105774..1105941) 1 NC_007793.1 hypothetical protein 1105941 3914416 SAUSA300_1010 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493708.1 1105774 R 451515 CDS YP_493709.1 87160594 3915213 complement(1105943..1106425) 1 NC_007793.1 hypothetical protein 1106425 3915213 SAUSA300_1011 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493709.1 1105943 R 451515 CDS YP_493710.1 87161779 3913633 1106566..1106841 1 NC_007793.1 depletion of this protein in Bacillus subtilis results in defects in cell morphology; crystal structure of Staphylococcus protein shows homodimer; putative ligand binding protein; hypothetical protein 1106841 3913633 SAUSA300_1012 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493710.1 1106566 D 451515 CDS YP_493711.1 87162377 3913530 1107155..1108381 1 NC_007793.1 identified by match to protein family HMM PF01098; cell cycle protein FtsW 1108381 3913530 SAUSA300_1013 Staphylococcus aureus subsp. aureus USA300_FPR3757 cell cycle protein FtsW YP_493711.1 1107155 D 451515 CDS YP_493712.1 87160348 3915123 1108935..1112387 1 NC_007793.1 biotin-containing enzyme that catalyzes a two step carboxylation of pyruvate to oxaloacetate; pyruvate carboxylase 1112387 pyc 3915123 pyc Staphylococcus aureus subsp. aureus USA300_FPR3757 pyruvate carboxylase YP_493712.1 1108935 D 451515 CDS YP_493713.1 87161128 3913717 complement(1112527..1113597) 1 NC_007793.1 identified by match to protein family HMM PF02628; cytochrome oxidase assembly protein 1113597 ctaA 3913717 ctaA Staphylococcus aureus subsp. aureus USA300_FPR3757 cytochrome oxidase assembly protein YP_493713.1 1112527 R 451515 CDS YP_493714.1 87161773 3913627 1113878..1114789 1 NC_007793.1 converts protoheme IX and farnesyl diphosphate to heme O; protoheme IX farnesyltransferase 1114789 cyoE 3913627 cyoE Staphylococcus aureus subsp. aureus USA300_FPR3757 protoheme IX farnesyltransferase YP_493714.1 1113878 D 451515 CDS YP_493715.1 87160861 3914132 1114814..1115275 1 NC_007793.1 identified by match to protein family HMM PF04238; hypothetical protein 1115275 3914132 SAUSA300_1017 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493715.1 1114814 D 451515 CDS YP_493716.1 87162162 3915193 1115602..1116639 1 NC_007793.1 identified by match to protein family HMM PF00188; hypothetical protein 1116639 3915193 SAUSA300_1018 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493716.1 1115602 D 451515 CDS YP_493717.1 87160145 3913115 1116655..1117089 1 NC_007793.1 identified by match to protein family HMM PF07050; hypothetical protein 1117089 3913115 SAUSA300_1019 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493717.1 1116655 D 451515 CDS YP_493718.1 87160649 3913973 complement(1117152..1118078) 1 NC_007793.1 identified by match to protein family HMM PF03009; glycerophosphoryl diester phosphodiesterase family protein 1118078 3913973 SAUSA300_1020 Staphylococcus aureus subsp. aureus USA300_FPR3757 glycerophosphoryl diester phosphodiesterase family protein YP_493718.1 1117152 R 451515 CDS YP_493719.1 87161200 3914911 1118317..1118571 1 NC_007793.1 hypothetical protein 1118571 3914911 SAUSA300_1021 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493719.1 1118317 D 451515 CDS YP_493720.1 87161423 3914072 complement(1118574..1118963) 1 NC_007793.1 hypothetical protein 1118963 3914072 SAUSA300_1022 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493720.1 1118574 R 451515 CDS YP_493721.1 87161982 3914879 1119033..1119575 1 NC_007793.1 identified by match to protein family HMM PF03602; match to protein family HMM PF05175; match to protein family HMM TIGR00095; hypothetical protein 1119575 3914879 SAUSA300_1023 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493721.1 1119033 D 451515 CDS YP_493722.1 87162391 3913914 1119577..1120059 1 NC_007793.1 Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA; phosphopantetheine adenylyltransferase 1120059 coaD 3913914 coaD Staphylococcus aureus subsp. aureus USA300_FPR3757 phosphopantetheine adenylyltransferase YP_493722.1 1119577 D 451515 CDS YP_493723.1 87161849 3913955 complement(1120121..1121260) 1 NC_007793.1 identified by match to protein family HMM PF05636; hypothetical protein 1121260 3913955 SAUSA300_1025 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493723.1 1120121 R 451515 CDS YP_493724.1 87161804 3914640 1121387..1121944 1 NC_007793.1 identified by match to protein family HMM PF02620; hypothetical protein 1121944 3914640 SAUSA300_1026 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493724.1 1121387 D 451515 CDS YP_493725.1 87161952 3913709 1122024..1122197 1 NC_007793.1 some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 1122197 rpmF 3913709 rpmF Staphylococcus aureus subsp. aureus USA300_FPR3757 50S ribosomal protein L32 YP_493725.1 1122024 D 451515 CDS YP_493726.1 87161355 3912872 complement(1122351..1124288) 1 NC_007793.1 identified by match to protein family HMM PF00746; match to protein family HMM PF04650; match to protein family HMM PF05031; match to protein family HMM TIGR01167; match to protein family HMM TIGR01168; iron transport associated domain-containing protein 1124288 3912872 SAUSA300_1028 Staphylococcus aureus subsp. aureus USA300_FPR3757 iron transport associated domain-containing protein YP_493726.1 1122351 R 451515 CDS YP_493727.1 87161139 3913728 complement(1124491..1125543) 1 NC_007793.1 identified by match to protein family HMM PF00746; match to protein family HMM PF05031; match to protein family HMM TIGR01167; iron transport associated domain-containing protein 1125543 3913728 SAUSA300_1029 Staphylococcus aureus subsp. aureus USA300_FPR3757 iron transport associated domain-containing protein YP_493727.1 1124491 R 451515 CDS YP_493728.1 87159927 3914973 1125752..1126435 1 NC_007793.1 identified by match to protein family HMM PF05031; iron transport associated domain-containing protein 1126435 3914973 SAUSA300_1030 Staphylococcus aureus subsp. aureus USA300_FPR3757 iron transport associated domain-containing protein YP_493728.1 1125752 D 451515 CDS YP_493729.1 87162150 3914697 1126435..1127511 1 NC_007793.1 hypothetical protein 1127511 3914697 SAUSA300_1031 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493729.1 1126435 D 451515 CDS YP_493730.1 87160253 3915144 1127538..1128386 1 NC_007793.1 identified by match to protein family HMM PF01497; putative iron compound ABC transporter iron compound-binding protein 1128386 3915144 SAUSA300_1032 Staphylococcus aureus subsp. aureus USA300_FPR3757 putative iron compound ABC transporter iron compound-binding protein YP_493730.1 1127538 D 451515 CDS YP_493731.1 87160984 3913316 1128399..1129364 1 NC_007793.1 identified by match to protein family HMM PF01032; match to protein family HMM PF02653; iron/heme permease 1129364 3913316 SAUSA300_1033 Staphylococcus aureus subsp. aureus USA300_FPR3757 iron/heme permease YP_493731.1 1128399 D 451515 CDS YP_493732.1 87161259 3913868 1129426..1130160 1 NC_007793.1 identified by match to protein family HMM PF07170; sortase B 1130160 srtB 3913868 srtB Staphylococcus aureus subsp. aureus USA300_FPR3757 sortase B YP_493732.1 1129426 D 451515 CDS YP_493733.1 87162314 3913448 1130179..1130502 1 NC_007793.1 iron regulated; catalyzes the release of heme from hemoglobin allowing bacterial pathogens to use the host heme as an iron source; heme-degrading monooxygenase IsdG 1130502 3913448 SAUSA300_1035 Staphylococcus aureus subsp. aureus USA300_FPR3757 heme-degrading monooxygenase IsdG YP_493733.1 1130179 D 451515 CDS YP_493734.1 87160549 3913504 1130886..1131626 1 NC_007793.1 identified by match to protein family HMM PF00588; match to protein family HMM PF08032; RNA methyltransferase 1131626 3913504 SAUSA300_1036 Staphylococcus aureus subsp. aureus USA300_FPR3757 RNA methyltransferase YP_493734.1 1130886 D 451515 CDS YP_493735.1 87159980 3914832 1132007..1133065 1 NC_007793.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha 1133065 pheS 3914832 pheS Staphylococcus aureus subsp. aureus USA300_FPR3757 phenylalanyl-tRNA synthetase subunit alpha YP_493735.1 1132007 D 451515 CDS YP_493736.1 87161618 3913473 1133065..1135467 1 NC_007793.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta 1135467 pheT 3913473 pheT Staphylococcus aureus subsp. aureus USA300_FPR3757 phenylalanyl-tRNA synthetase subunit beta YP_493736.1 1133065 D 451515 CDS YP_493737.1 87161110 3914336 complement(1135638..1136576) 1 NC_007793.1 An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids; ribonuclease HIII 1136576 rnhC 3914336 rnhC Staphylococcus aureus subsp. aureus USA300_FPR3757 ribonuclease HIII YP_493737.1 1135638 R 451515 CDS YP_493738.1 87160987 3913319 1136946..1137212 1 NC_007793.1 identified by match to protein family HMM PF05164; hypothetical protein 1137212 3913319 SAUSA300_1040 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493738.1 1136946 D 451515 CDS YP_493739.1 87160444 3912947 1137213..1137734 1 NC_007793.1 identified by match to protein family HMM PF02674; hypothetical protein 1137734 3912947 SAUSA300_1041 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493739.1 1137213 D 451515 CDS YP_493740.1 87162139 3914686 1137807..1139519 1 NC_007793.1 identified by match to protein family HMM PF02811; hypothetical protein 1139519 3914686 SAUSA300_1042 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493740.1 1137807 D 451515 CDS YP_493741.1 87161406 3914094 1139529..1141877 1 NC_007793.1 MutS2; MutS-II; involved in blocking homologous and homeologous recombination; has ATPase activity stimulated by recombination intermediates; inhibits DNA strand exchange; recombination and DNA strand exchange inhibitor protein 1141877 mutS2 3914094 mutS2 Staphylococcus aureus subsp. aureus USA300_FPR3757 recombination and DNA strand exchange inhibitor protein YP_493741.1 1139529 D 451515 CDS YP_493742.1 87161236 3914790 1142050..1142364 1 NC_007793.1 identified by match to protein family HMM PF00085; match to protein family HMM TIGR01068; thioredoxin 1142364 trx 3914790 trx Staphylococcus aureus subsp. aureus USA300_FPR3757 thioredoxin YP_493742.1 1142050 D 451515 CDS YP_493743.2 162138564 3913389 1142688..1144469 1 NC_007793.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C 1144469 uvrC 3913389 uvrC Staphylococcus aureus subsp. aureus USA300_FPR3757 excinuclease ABC subunit C YP_493743.2 1142688 D 451515 CDS YP_493744.1 87160468 3913069 1144793..1145407 1 NC_007793.1 identified by match to protein family HMM TIGR02046; succinate dehydrogenase, cytochrome b-558 subunit 1145407 sdhC 3913069 sdhC Staphylococcus aureus subsp. aureus USA300_FPR3757 succinate dehydrogenase, cytochrome b-558 subunit YP_493744.1 1144793 D 451515 CDS YP_493745.1 87161058 3912768 1145459..1147225 1 NC_007793.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; succinate dehydrogenase flavoprotein subunit 1147225 sdhA 3912768 sdhA Staphylococcus aureus subsp. aureus USA300_FPR3757 succinate dehydrogenase flavoprotein subunit YP_493745.1 1145459 D 451515 CDS YP_493746.1 87161509 3913222 1147225..1148040 1 NC_007793.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase; succinate dehydrogenase iron-sulfur subunit 1148040 sdhB 3913222 sdhB Staphylococcus aureus subsp. aureus USA300_FPR3757 succinate dehydrogenase iron-sulfur subunit YP_493746.1 1147225 D 451515 CDS YP_493747.1 87161415 3914103 1148276..1149076 1 NC_007793.1 converts L-glutamate to D-glutamate, a component of peptidoglycan; glutamate racemase 1149076 murI 3914103 murI Staphylococcus aureus subsp. aureus USA300_FPR3757 glutamate racemase YP_493747.1 1148276 D 451515 CDS YP_493748.1 87162116 3913580 1149088..1149675 1 NC_007793.1 hydrolyzes non-standard nucleotides such as xanthine and inosine; nucleoside-triphosphatase 1149675 3913580 SAUSA300_1050 Staphylococcus aureus subsp. aureus USA300_FPR3757 nucleoside-triphosphatase YP_493748.1 1149088 D 451515 CDS YP_493749.1 87159931 3914977 1149668..1150171 1 NC_007793.1 identified by match to protein family HMM TIGR00040; hypothetical protein 1150171 3914977 SAUSA300_1051 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493749.1 1149668 D 451515 CDS YP_493750.1 87160634 3915069 1150660..1150989 1 NC_007793.1 fibrinogen-binding protein 1150989 3915069 SAUSA300_1052 Staphylococcus aureus subsp. aureus USA300_FPR3757 fibrinogen-binding protein YP_493750.1 1150660 D 451515 CDS YP_493751.1 87162250 3914875 complement(1151358..1151759) 1 NC_007793.1 FLIPr; secreted protein that blocks the formyl peptide receptor-like 1 (FPRL1) found in neutrophils, monocytes, B cells, and NK cells; inhibits the binding of chemoattractants (such as formylated peptides) to FPRL1, which initiates the phagocyte mobilization towards the infection site; formyl peptide receptor-like 1 inhibitory protein 1151759 3914875 SAUSA300_1053 Staphylococcus aureus subsp. aureus USA300_FPR3757 formyl peptide receptor-like 1 inhibitory protein YP_493751.1 1151358 R 451515 CDS YP_493752.1 87160241 3915132 1152431..1152937 1 NC_007793.1 hypothetical protein 1152937 3915132 SAUSA300_1054 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493752.1 1152431 D 451515 CDS YP_493753.1 87162306 3913615 1153196..1153693 1 NC_007793.1 fibrinogen-binding protein 1153693 efb 3913615 efb Staphylococcus aureus subsp. aureus USA300_FPR3757 fibrinogen-binding protein YP_493753.1 1153196 D 451515 CDS YP_493754.1 87161558 3915173 1153847..1154197 1 NC_007793.1 hypothetical protein 1154197 3915173 SAUSA300_1056 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493754.1 1153847 D 451515 CDS YP_493755.1 87162265 3913183 complement(1155657..1155890) 1 NC_007793.1 hypothetical protein 1155890 3913183 SAUSA300_1057 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493755.1 1155657 R 451515 CDS YP_493756.1 87160380 3912806 complement(1156367..1157326) 1 NC_007793.1 identified by match to protein family HMM PF07968; match to protein family HMM TIGR01002; alpha-hemolysin 1157326 3912806 SAUSA300_1058 Staphylococcus aureus subsp. aureus USA300_FPR3757 alpha-hemolysin YP_493756.1 1156367 R 451515 CDS YP_493757.1 87161116 3914342 complement(1158771..1159487) 1 NC_007793.1 these proteins share structural homology to known superantigen proteins but do not exhibit any of the properties expected such as histocompatibility complex class II binding or broad T-cell activation; superantigen-like protein 1159487 3914342 SAUSA300_1059 Staphylococcus aureus subsp. aureus USA300_FPR3757 superantigen-like protein YP_493757.1 1158771 R 451515 CDS YP_493758.1 87161939 3914599 complement(1159595..1160320) 1 NC_007793.1 these proteins share structural homology to known superantigen proteins but do not exhibit any of the properties expected such as histocompatibility complex class II binding or broad T-cell activation; superantigen-like protein 1160320 3914599 SAUSA300_1060 Staphylococcus aureus subsp. aureus USA300_FPR3757 superantigen-like protein YP_493758.1 1159595 R 451515 CDS YP_493759.1 87160115 3913379 complement(1160415..1161140) 1 NC_007793.1 these proteins share structural homology to known superantigen proteins but do not exhibit any of the properties expected such as histocompatibility complex class II binding or broad T-cell activation; superantigen-like protein 1161140 3913379 SAUSA300_1061 Staphylococcus aureus subsp. aureus USA300_FPR3757 superantigen-like protein YP_493759.1 1160415 R 451515 CDS YP_493760.1 87160799 3914619 1161578..1162579 1 NC_007793.1 catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation; ornithine carbamoyltransferase 1162579 argF 3914619 argF Staphylococcus aureus subsp. aureus USA300_FPR3757 ornithine carbamoyltransferase YP_493760.1 1161578 D 451515 CDS YP_493761.1 87161364 3914763 1162602..1163534 1 NC_007793.1 catalyzes the reversible synthesis of carbamate and ATP from carbamoyl phosphate and ADP; carbamate kinase 1163534 arcC 3914763 arcC Staphylococcus aureus subsp. aureus USA300_FPR3757 carbamate kinase YP_493761.1 1162602 D 451515 CDS YP_493762.1 87160742 3913443 1163706..1165262 1 NC_007793.1 identified by match to protein family HMM PF03600; match to protein family HMM PF03606; match to protein family HMM PF06808; TRAP family protein 1165262 3913443 SAUSA300_1064 Staphylococcus aureus subsp. aureus USA300_FPR3757 TRAP family protein YP_493762.1 1163706 D 451515 CDS YP_493763.1 87161154 3914499 complement(1166102..1167049) 1 NC_007793.1 identified by match to protein family HMM PF03595; exfoliative toxin A 1167049 3914499 SAUSA300_1065 Staphylococcus aureus subsp. aureus USA300_FPR3757 exfoliative toxin A YP_493763.1 1166102 R 451515 CDS YP_493764.1 87161881 3914569 1168398..1168532 1 NC_007793.1 identified by match to protein family HMM PF05480; anti protein 1168532 3914569 SAUSA300_1067 Staphylococcus aureus subsp. aureus USA300_FPR3757 anti protein YP_493764.1 1168398 D 451515 CDS YP_493765.1 87160365 3913239 1168589..1168723 1 NC_007793.1 identified by match to protein family HMM PF05480; anti protein 1168723 3913239 SAUSA300_1068 Staphylococcus aureus subsp. aureus USA300_FPR3757 anti protein YP_493765.1 1168589 D 451515 CDS YP_493766.1 87161095 3914301 1168847..1169542 1 NC_007793.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549; match to protein family HMM TIGR02254; hypothetical protein 1169542 3914301 SAUSA300_1069 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493766.1 1168847 D 451515 CDS YP_493767.1 87161564 3915179 complement(1169651..1170091) 1 NC_007793.1 identified by match to protein family HMM PF00583; hypothetical protein 1170091 3915179 SAUSA300_1070 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493767.1 1169651 R 451515 CDS YP_493768.1 87162237 3914862 1170286..1171899 1 NC_007793.1 hypothetical protein 1171899 3914862 SAUSA300_1071 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493768.1 1170286 D 451515 CDS YP_493769.1 87161858 3913964 1172043..1172474 1 NC_007793.1 MraZ; UPF0040; crystal structure shows similarity to AbrB; cell division protein MraZ 1172474 mraZ 3913964 mraZ Staphylococcus aureus subsp. aureus USA300_FPR3757 cell division protein MraZ YP_493769.1 1172043 D 451515 CDS YP_493770.1 87161763 3913908 1172511..1173425 1 NC_007793.1 identified by match to protein family HMM PF01795; match to protein family HMM TIGR00006; S-adenosyl-methyltransferase MraW 1173425 mraW 3913908 mraW Staphylococcus aureus subsp. aureus USA300_FPR3757 S-adenosyl-methyltransferase MraW YP_493770.1 1172511 D 451515 CDS YP_493771.1 87160704 3912819 1173439..1173840 1 NC_007793.1 identified by match to protein family HMM PF04977; match to protein family HMM TIGR02209; cell division protein 1173840 ftsL 3912819 ftsL Staphylococcus aureus subsp. aureus USA300_FPR3757 cell division protein YP_493771.1 1173439 D 451515 CDS YP_493772.1 87162081 3914624 1173821..1176055 1 NC_007793.1 identified by match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM PF03793; penicillin-binding protein 1 1176055 pbpA 3914624 pbpA Staphylococcus aureus subsp. aureus USA300_FPR3757 penicillin-binding protein 1 YP_493772.1 1173821 D 451515 CDS YP_493773.1 87160312 3914548 1176347..1177312 1 NC_007793.1 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase 1177312 mraY 3914548 mraY Staphylococcus aureus subsp. aureus USA300_FPR3757 phospho-N-acetylmuramoyl-pentapeptide- transferase YP_493773.1 1176347 D 451515 CDS YP_493774.1 87160865 3914137 1177314..1178663 1 NC_007793.1 UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase 1178663 murD 3914137 murD Staphylococcus aureus subsp. aureus USA300_FPR3757 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase YP_493774.1 1177314 D 451515 CDS YP_493775.1 87161782 3913636 1178679..1179998 1 NC_007793.1 identified by match to protein family HMM PF03799; cell division protein 1179998 divIB 3913636 divIB Staphylococcus aureus subsp. aureus USA300_FPR3757 cell division protein YP_493775.1 1178679 D 451515 CDS YP_493776.1 87161941 3913698 1180104..1181516 1 NC_007793.1 identified by match to protein family HMM PF02491; match to protein family HMM TIGR01174; cell division protein ftsA 1181516 ftsA 3913698 ftsA Staphylococcus aureus subsp. aureus USA300_FPR3757 cell division protein ftsA YP_493776.1 1180104 D 451515 CDS YP_493777.1 87162194 3914837 1181549..1182721 1 NC_007793.1 GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function; cell division protein FtsZ 1182721 ftsZ 3914837 ftsZ Staphylococcus aureus subsp. aureus USA300_FPR3757 cell division protein FtsZ YP_493777.1 1181549 D 451515 CDS YP_493778.1 87161460 3914051 1183107..1183772 1 NC_007793.1 identified by match to protein family HMM PF02578; hypothetical protein 1183772 3914051 SAUSA300_1081 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493778.1 1183107 D 451515 CDS YP_493779.1 87160902 3915153 1183796..1184464 1 NC_007793.1 identified by match to protein family HMM PF01168; match to protein family HMM TIGR00044; hypothetical protein 1184464 3915153 SAUSA300_1082 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493779.1 1183796 D 451515 CDS YP_493780.1 87160336 3915111 1184461..1185024 1 NC_007793.1 identified by match to protein family HMM PF04472; hypothetical protein 1185024 3915111 SAUSA300_1083 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493780.1 1184461 D 451515 CDS YP_493781.1 87161983 3914880 1185036..1185326 1 NC_007793.1 identified by match to protein family HMM PF02325; hypothetical protein 1185326 3914880 SAUSA300_1084 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493781.1 1185036 D 451515 CDS YP_493782.1 87159985 3914413 1185409..1186215 1 NC_007793.1 identified by match to protein family HMM PF01479; hypothetical protein 1186215 3914413 SAUSA300_1085 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493782.1 1185409 D 451515 CDS YP_493783.1 87160546 3914026 1186239..1186856 1 NC_007793.1 identified by match to protein family HMM PF05103; hypothetical protein 1186856 3914026 SAUSA300_1086 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493783.1 1186239 D 451515 CDS YP_493784.1 87161418 3914067 1187077..1189830 1 NC_007793.1 IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 1 subfamily; some organisms carry two different copies of this enzyme; isoleucyl-tRNA synthetase 1189830 ileS 3914067 ileS Staphylococcus aureus subsp. aureus USA300_FPR3757 isoleucyl-tRNA synthetase YP_493784.1 1187077 D 451515 CDS YP_493785.1 87160168 3914520 1190120..1190917 1 NC_007793.1 identified by match to protein family HMM PF00903; glyoxalase family protein 1190917 3914520 SAUSA300_1088 Staphylococcus aureus subsp. aureus USA300_FPR3757 glyoxalase family protein YP_493785.1 1190120 D 451515 CDS YP_493786.1 87160722 3912837 1191741..1192232 1 NC_007793.1 lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase 1192232 lspA 3912837 lspA Staphylococcus aureus subsp. aureus USA300_FPR3757 lipoprotein signal peptidase YP_493786.1 1191741 D 451515 CDS YP_493787.1 87161600 3914384 1192232..1193149 1 NC_007793.1 identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00005; hypothetical protein 1193149 3914384 SAUSA300_1090 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493787.1 1192232 D 451515 CDS YP_493788.1 87162174 3915205 1193548..1194075 1 NC_007793.1 regulates pyrimidine biosynthesis by binding to the mRNA of the pyr genes, also has been shown to have uracil phosphoribosyltransferase activity; bifunctional pyrimidine regulatory protein PyrR uracil phosphoribosyltransferase 1194075 pyrR 3915205 pyrR Staphylococcus aureus subsp. aureus USA300_FPR3757 bifunctional pyrimidine regulatory protein PyrR uracil phosphoribosyltransferase YP_493788.1 1193548 D 451515 CDS YP_493789.1 87160927 3914365 1194293..1195600 1 NC_007793.1 identified by match to protein family HMM PF00860; match to protein family HMM TIGR00801; uracil permease 1195600 pyrP 3914365 pyrP Staphylococcus aureus subsp. aureus USA300_FPR3757 uracil permease YP_493789.1 1194293 D 451515 CDS YP_493790.1 87161736 3913022 1195628..1196509 1 NC_007793.1 catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis; aspartate carbamoyltransferase catalytic subunit 1196509 pyrB 3913022 pyrB Staphylococcus aureus subsp. aureus USA300_FPR3757 aspartate carbamoyltransferase catalytic subunit YP_493790.1 1195628 D 451515 CDS YP_493791.1 87161310 3914806 1196527..1197801 1 NC_007793.1 catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis; dihydroorotase 1197801 pyrC 3914806 pyrC Staphylococcus aureus subsp. aureus USA300_FPR3757 dihydroorotase YP_493791.1 1196527 D 451515 CDS YP_493792.1 87162090 3914633 1197803..1198903 1 NC_007793.1 catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers; carbamoyl phosphate synthase small subunit 1198903 carA 3914633 carA Staphylococcus aureus subsp. aureus USA300_FPR3757 carbamoyl phosphate synthase small subunit YP_493792.1 1197803 D 451515 CDS YP_493793.1 87160076 3913300 1198896..1202069 1 NC_007793.1 four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity; carbamoyl phosphate synthase large subunit 1202069 carB 3913300 carB Staphylococcus aureus subsp. aureus USA300_FPR3757 carbamoyl phosphate synthase large subunit YP_493793.1 1198896 D 451515 CDS YP_493794.1 87160572 3914998 1202179..1202871 1 NC_007793.1 type 1 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase; orotidine 5'-phosphate decarboxylase 1202871 pyrF 3914998 pyrF Staphylococcus aureus subsp. aureus USA300_FPR3757 orotidine 5'-phosphate decarboxylase YP_493794.1 1202179 D 451515 CDS YP_493795.1 87161487 3914229 1202871..1203482 1 NC_007793.1 involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate; orotate phosphoribosyltransferase 1203482 pyrE 3914229 pyrE Staphylococcus aureus subsp. aureus USA300_FPR3757 orotate phosphoribosyltransferase YP_493795.1 1202871 D 451515 CDS YP_493796.1 87160471 3913326 1203512..1203724 1 NC_007793.1 hypothetical protein 1203724 3913326 SAUSA300_1099 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493796.1 1203512 D 451515 CDS YP_493797.1 87161044 3912889 1204161..1204562 1 NC_007793.1 identified by match to protein family HMM PF06983; hypothetical protein 1204562 3912889 SAUSA300_1100 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493797.1 1204161 D 451515 CDS YP_493798.1 87162170 3915201 complement(1204825..1206522) 1 NC_007793.1 identified by match to protein family HMM PF05670; match to protein family HMM PF05833; putative fibronectin/fibrinogen binding protein 1206522 3915201 SAUSA300_1101 Staphylococcus aureus subsp. aureus USA300_FPR3757 putative fibronectin/fibrinogen binding protein YP_493798.1 1204825 R 451515 CDS YP_493799.1 87161588 3913657 1206797..1207420 1 NC_007793.1 Essential for recycling GMP and indirectly, cGMP; guanylate kinase 1207420 gmk 3913657 gmk Staphylococcus aureus subsp. aureus USA300_FPR3757 guanylate kinase YP_493799.1 1206797 D 451515 CDS YP_493800.1 87161403 3914091 1207420..1207638 1 NC_007793.1 Promotes RNA polymerase assembly; latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits; DNA-directed RNA polymerase subunit omega 1207638 rpoZ 3914091 rpoZ Staphylococcus aureus subsp. aureus USA300_FPR3757 DNA-directed RNA polymerase subunit omega YP_493800.1 1207420 D 451515 CDS YP_493801.1 87160791 3914611 1207854..1209053 1 NC_007793.1 identified by match to protein family HMM PF02441; match to protein family HMM PF04127; match to protein family HMM TIGR00521; phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase 1209053 coaBC 3914611 coaBC Staphylococcus aureus subsp. aureus USA300_FPR3757 phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase YP_493801.1 1207854 D 451515 CDS YP_493802.1 87161046 3912891 1209053..1211461 1 NC_007793.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF04851; match to protein family HMM TIGR00595; primosomal protein N` 1211461 priA 3912891 priA Staphylococcus aureus subsp. aureus USA300_FPR3757 primosomal protein N` YP_493802.1 1209053 D 451515 CDS YP_493803.1 87160451 3913052 1211967..1212920 1 NC_007793.1 putative lipoprotein 1212920 3913052 SAUSA300_1106 Staphylococcus aureus subsp. aureus USA300_FPR3757 putative lipoprotein YP_493803.1 1211967 D 451515 CDS YP_493804.1 87161846 3913952 complement(1213083..1213361) 1 NC_007793.1 identified by match to protein family HMM PF05154; hypothetical protein 1213361 3913952 SAUSA300_1107 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493804.1 1213083 R 451515 CDS YP_493805.1 87161304 3914800 1213585..1214073 1 NC_007793.1 cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase 1214073 def 3914800 def Staphylococcus aureus subsp. aureus USA300_FPR3757 peptide deformylase YP_493805.1 1213585 D 451515 CDS YP_493806.1 87161486 3914228 1214066..1215001 1 NC_007793.1 identified by match to protein family HMM PF00551; match to protein family HMM PF02911; match to protein family HMM TIGR00460; methionyl-tRNA formyltransferase 1215001 fmt 3914228 fmt Staphylococcus aureus subsp. aureus USA300_FPR3757 methionyl-tRNA formyltransferase YP_493806.1 1214066 D 451515 CDS YP_493807.1 87161915 3913006 1214998..1216305 1 NC_007793.1 identified by match to protein family HMM PF01029; match to protein family HMM PF01189; match to protein family HMM TIGR00563; ribosomal RNA small subunit methyltransferase B 1216305 sun 3913006 sun Staphylococcus aureus subsp. aureus USA300_FPR3757 ribosomal RNA small subunit methyltransferase B YP_493807.1 1214998 D 451515 CDS YP_493808.1 87160347 3915122 1216308..1217402 1 NC_007793.1 23S rRNA m2A2503 methyltransferase; methylates the C2 position of the A2530 nucleotide in 23S rRNA; may be involved in antibiotic resistance; ribosomal RNA large subunit methyltransferase N 1217402 3915122 SAUSA300_1111 Staphylococcus aureus subsp. aureus USA300_FPR3757 ribosomal RNA large subunit methyltransferase N YP_493808.1 1216308 D 451515 CDS YP_493809.1 87160717 3912832 1217409..1218152 1 NC_007793.1 identified by match to protein family HMM PF00481; protein phosphatase 2C domain-containing protein 1218152 3912832 SAUSA300_1112 Staphylococcus aureus subsp. aureus USA300_FPR3757 protein phosphatase 2C domain-containing protein YP_493809.1 1217409 D 451515 CDS YP_493810.1 87161100 3914306 1218149..1220143 1 NC_007793.1 identified by match to protein family HMM PF00069; match to protein family HMM PF03793; protein kinase 1220143 pknB 3914306 pknB Staphylococcus aureus subsp. aureus USA300_FPR3757 protein kinase YP_493810.1 1218149 D 451515 CDS YP_493811.2 162138557 3913712 1220371..1221246 1 NC_007793.1 identified by match to protein family HMM PF03193; match to protein family HMM TIGR00157; hypothetical protein 1221246 rsgA 3913712 rsgA Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493811.2 1220371 D 451515 CDS YP_493812.1 87161501 3913214 1221247..1221891 1 NC_007793.1 identified by match to protein family HMM PF00834; match to protein family HMM TIGR01163; ribulose-phosphate 3-epimerase 1221891 rpe 3913214 rpe Staphylococcus aureus subsp. aureus USA300_FPR3757 ribulose-phosphate 3-epimerase YP_493812.1 1221247 D 451515 CDS YP_493813.1 87160967 3915362 1221898..1222539 1 NC_007793.1 identified by match to protein family HMM PF04263; match to protein family HMM PF04265; match to protein family HMM TIGR01378; hypothetical protein 1222539 3915362 SAUSA300_1116 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493813.1 1221898 D 451515 CDS YP_493814.1 87160693 3914187 complement(1222920..1223108) 1 NC_007793.1 required for 70S ribosome assembly; 50S ribosomal protein L28 1223108 rpmB 3914187 rpmB Staphylococcus aureus subsp. aureus USA300_FPR3757 50S ribosomal protein L28 YP_493814.1 1222920 R 451515 CDS YP_493815.1 87160204 3913077 1223551..1223925 1 NC_007793.1 identified by match to protein family HMM PF03780; hypothetical protein 1223925 3913077 SAUSA300_1118 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493815.1 1223551 D 451515 CDS YP_493816.1 87161903 3912994 1223940..1225586 1 NC_007793.1 identified by match to protein family HMM PF02734; hypothetical protein 1225586 3912994 SAUSA300_1119 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493816.1 1223940 D 451515 CDS YP_493817.1 87161257 3913866 1225776..1227836 1 NC_007793.1 catalyzes branch migration in Holliday junction intermediates; ATP-dependent DNA helicase RecG 1227836 recG 3913866 recG Staphylococcus aureus subsp. aureus USA300_FPR3757 ATP-dependent DNA helicase RecG YP_493817.1 1225776 D 451515 CDS YP_493818.1 87160998 3913564 1228039..1228611 1 NC_007793.1 negative regulator of genes involved in fatty acid and phospholipid biosynthesis for gram positive bacteria; fatty acid biosynthesis transcriptional regulator 1228611 3913564 SAUSA300_1121 Staphylococcus aureus subsp. aureus USA300_FPR3757 fatty acid biosynthesis transcriptional regulator YP_493818.1 1228039 D 451515 CDS YP_493819.1 87160287 3913494 1228616..1229602 1 NC_007793.1 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY; putative glycerol-3-phosphate acyltransferase PlsX 1229602 plsX 3913494 plsX Staphylococcus aureus subsp. aureus USA300_FPR3757 putative glycerol-3-phosphate acyltransferase PlsX YP_493819.1 1228616 D 451515 CDS YP_493820.1 87162354 3914203 1229595..1230521 1 NC_007793.1 identified by match to protein family HMM PF00698; match to protein family HMM TIGR00128; malonyl CoA-acyl carrier protein transacylase 1230521 fabD 3914203 fabD Staphylococcus aureus subsp. aureus USA300_FPR3757 malonyl CoA-acyl carrier protein transacylase YP_493820.1 1229595 D 451515 CDS YP_493821.1 87161805 3914641 1230514..1231248 1 NC_007793.1 identified by match to protein family HMM PF00106; match to protein family HMM TIGR01830; 3-oxoacyl-(acyl-carrier-protein) reductase 1231248 fabG 3914641 fabG Staphylococcus aureus subsp. aureus USA300_FPR3757 3-oxoacyl-(acyl-carrier-protein) reductase YP_493821.1 1230514 D 451515 CDS YP_493822.1 87162021 3914278 1231491..1231724 1 NC_007793.1 carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein 1231724 acpP 3914278 acpP Staphylococcus aureus subsp. aureus USA300_FPR3757 acyl carrier protein YP_493822.1 1231491 D 451515 CDS YP_493823.1 87160069 3913293 1231840..1232571 1 NC_007793.1 cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity; ribonuclease III 1232571 rnc 3913293 rnc Staphylococcus aureus subsp. aureus USA300_FPR3757 ribonuclease III YP_493823.1 1231840 D 451515 CDS YP_493824.1 87160811 3913043 1232718..1236284 1 NC_007793.1 identified by match to protein family HMM PF02463; match to protein family HMM PF06470; match to protein family HMM TIGR00650; match to protein family HMM TIGR02168; chromosome segregation protein SMC 1236284 smc 3913043 smc Staphylococcus aureus subsp. aureus USA300_FPR3757 chromosome segregation protein SMC YP_493824.1 1232718 D 451515 CDS YP_493825.1 87161637 3913687 1236284..1237534 1 NC_007793.1 identified by match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM TIGR00064; signal recognition particle-docking protein FtsY 1237534 ftsY 3913687 ftsY Staphylococcus aureus subsp. aureus USA300_FPR3757 signal recognition particle-docking protein FtsY YP_493825.1 1236284 D 451515 CDS YP_493826.1 87160667 3915044 1237521..1237853 1 NC_007793.1 identified by match to protein family HMM PF04297; putative DNA-binding protein 1237853 3915044 SAUSA300_1129 Staphylococcus aureus subsp. aureus USA300_FPR3757 putative DNA-binding protein YP_493826.1 1237521 D 451515 CDS YP_493827.1 87161356 3912873 1237879..1239246 1 NC_007793.1 identified by match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM PF02978; match to protein family HMM TIGR00959; signal recognition particle protein 1239246 ffh 3912873 ffh Staphylococcus aureus subsp. aureus USA300_FPR3757 signal recognition particle protein YP_493827.1 1237879 D 451515 CDS YP_493828.1 87161596 3914380 1239681..1239956 1 NC_007793.1 binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16 1239956 rpsP 3914380 rpsP Staphylococcus aureus subsp. aureus USA300_FPR3757 30S ribosomal protein S16 YP_493828.1 1239681 D 451515 CDS YP_493829.1 87162204 3914847 1240144..1240647 1 NC_007793.1 Essential for efficient processing of 16S rRNA; 16S rRNA-processing protein RimM 1240647 rimM 3914847 rimM Staphylococcus aureus subsp. aureus USA300_FPR3757 16S rRNA-processing protein RimM YP_493829.1 1240144 D 451515 CDS YP_493830.1 87160858 3913404 1240647..1241384 1 NC_007793.1 methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; tRNA (guanine-N(1)-)-methyltransferase 1241384 trmD 3913404 trmD Staphylococcus aureus subsp. aureus USA300_FPR3757 tRNA (guanine-N(1)-)-methyltransferase YP_493830.1 1240647 D 451515 CDS YP_493831.1 87161692 3914457 1241487..1241837 1 NC_007793.1 this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 1241837 rplS 3914457 rplS Staphylococcus aureus subsp. aureus USA300_FPR3757 50S ribosomal protein L19 YP_493831.1 1241487 D 451515 CDS YP_493832.1 87161629 3913679 complement(1242081..1244687) 1 NC_007793.1 hypothetical protein 1244687 3913679 SAUSA300_1135 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493832.1 1242081 R 451515 CDS YP_493833.1 87162211 3914854 1245088..1245972 1 NC_007793.1 essential GTPase; functions in ribosome assembly; binds a unique part of the 23S rRNA; interacts with ribosomal protein L25(Ctc); ribosomal biogenesis GTPase 1245972 rbgA 3914854 rbgA Staphylococcus aureus subsp. aureus USA300_FPR3757 ribosomal biogenesis GTPase YP_493833.1 1245088 D 451515 CDS YP_493834.1 87160122 3912975 1245956..1246723 1 NC_007793.1 RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids; ribonuclease HII 1246723 rnhB 3912975 rnhB Staphylococcus aureus subsp. aureus USA300_FPR3757 ribonuclease HII YP_493834.1 1245956 D 451515 CDS YP_493835.1 87160758 3913421 1246832..1247998 1 NC_007793.1 catalyzes the interconversion of succinyl-CoA and succinate; succinyl-CoA synthetase subunit beta 1247998 sucC 3913421 sucC Staphylococcus aureus subsp. aureus USA300_FPR3757 succinyl-CoA synthetase subunit beta YP_493835.1 1246832 D 451515 CDS YP_493836.1 87161332 3915303 1248020..1248928 1 NC_007793.1 Catalyzes the only substrate-level phosphorylation in the TCA cycle; succinyl-CoA synthetase subunit alpha 1248928 sucD 3915303 sucD Staphylococcus aureus subsp. aureus USA300_FPR3757 succinyl-CoA synthetase subunit alpha YP_493836.1 1248020 D 451515 CDS YP_493837.1 87161904 3912995 1249122..1250273 1 NC_007793.1 identified by match to protein family HMM PF01476; match to protein family HMM PF04650; match to protein family HMM PF05257; match to protein family HMM TIGR01168; cell wall hydrolase 1250273 lytN 3912995 lytN Staphylococcus aureus subsp. aureus USA300_FPR3757 cell wall hydrolase YP_493837.1 1249122 D 451515 CDS YP_493838.1 87160130 3912983 1250301..1251545 1 NC_007793.1 identified by match to protein family HMM PF02388; endopeptidase resistance protein 1251545 3912983 SAUSA300_1141 Staphylococcus aureus subsp. aureus USA300_FPR3757 endopeptidase resistance protein YP_493838.1 1250301 D 451515 CDS YP_493839.1 87160701 3914195 1251718..1252590 1 NC_007793.1 identified by match to protein family HMM PF02481; match to protein family HMM TIGR00732; DNA protecting protein DprA 1252590 dprA 3914195 dprA Staphylococcus aureus subsp. aureus USA300_FPR3757 DNA protecting protein DprA YP_493839.1 1251718 D 451515 CDS YP_493840.1 87161325 3915296 1252764..1254839 1 NC_007793.1 catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity; DNA topoisomerase I 1254839 topA 3915296 topA Staphylococcus aureus subsp. aureus USA300_FPR3757 DNA topoisomerase I YP_493840.1 1252764 D 451515 CDS YP_493841.1 87161842 3913813 1254995..1256302 1 NC_007793.1 TrmFO; Gid; glucose-inhibited division protein; similar to GidA; the gene from Bacillus subtilis encodes a tRNA-methyltransferase that utilizes folate as the carbon donor and bound flavin as reductant; modifies tRNA at position 54 (uridine) of the T-psi loop to form a C5-methyluridine; tRNA (uracil-5-)-methyltransferase Gid 1256302 gid 3913813 gid Staphylococcus aureus subsp. aureus USA300_FPR3757 tRNA (uracil-5-)-methyltransferase Gid YP_493841.1 1254995 D 451515 CDS YP_493842.1 87162376 3913529 1256719..1257615 1 NC_007793.1 identified by match to protein family HMM PF00589; match to protein family HMM PF02899; match to protein family HMM TIGR02224; tyrosine recombinase xerC 1257615 xerC 3913529 xerC Staphylococcus aureus subsp. aureus USA300_FPR3757 tyrosine recombinase xerC YP_493842.1 1256719 D 451515 CDS YP_493843.1 87160493 3915083 1257612..1258157 1 NC_007793.1 heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease peptidase subunit 1258157 hslV 3915083 hslV Staphylococcus aureus subsp. aureus USA300_FPR3757 ATP-dependent protease peptidase subunit YP_493843.1 1257612 D 451515 CDS YP_493844.1 87160912 3915163 1258223..1259626 1 NC_007793.1 heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease ATP-binding subunit HslU 1259626 hslU 3915163 hslU Staphylococcus aureus subsp. aureus USA300_FPR3757 ATP-dependent protease ATP-binding subunit HslU YP_493844.1 1258223 D 451515 CDS YP_493845.1 87161620 3913475 1259651..1260424 1 NC_007793.1 CodY; DNA-binding protein that represses the expression of many genes that are induced as cells make the transition from rapid exponential growth to stationary phase (By similarity). It is a GTP-binding protein that senses the intracellular GTP concentration as an indicator of nutritional limitations. At low GTP concentration it no longer binds GTP and stop to act as a transcriptional repressor; transcriptional repressor CodY 1260424 codY 3913475 codY Staphylococcus aureus subsp. aureus USA300_FPR3757 transcriptional repressor CodY YP_493845.1 1259651 D 451515 CDS YP_493846.1 87160672 3915049 1260766..1261533 1 NC_007793.1 one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 1261533 rpsB 3915049 rpsB Staphylococcus aureus subsp. aureus USA300_FPR3757 30S ribosomal protein S2 YP_493846.1 1260766 D 451515 CDS YP_493847.1 87161210 3912785 1261715..1262596 1 NC_007793.1 EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts 1262596 tsf 3912785 tsf Staphylococcus aureus subsp. aureus USA300_FPR3757 elongation factor Ts YP_493847.1 1261715 D 451515 CDS YP_493848.1 87162182 3913879 1262733..1263455 1 NC_007793.1 Catalyzes the phosphorylation of UMP to UDP; uridylate kinase 1263455 pyrH 3913879 pyrH Staphylococcus aureus subsp. aureus USA300_FPR3757 uridylate kinase YP_493848.1 1262733 D 451515 CDS YP_493849.1 87160153 3913123 1263474..1264028 1 NC_007793.1 Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; ribosome recycling factor 1264028 frr 3913123 frr Staphylococcus aureus subsp. aureus USA300_FPR3757 ribosome recycling factor YP_493849.1 1263474 D 451515 CDS YP_493850.1 87160357 3913231 1264401..1265171 1 NC_007793.1 catalyzes the formation of undecaprenyl pyrophosphate from isopentenyl pyrophosphate; undecaprenyl pyrophosphate synthase 1265171 uppS 3913231 uppS Staphylococcus aureus subsp. aureus USA300_FPR3757 undecaprenyl pyrophosphate synthase YP_493850.1 1264401 D 451515 CDS YP_493851.1 87160853 3913399 1265178..1265960 1 NC_007793.1 identified by match to protein family HMM PF01148; phosphatidate cytidylyltransferase 1265960 cdsA 3913399 cdsA Staphylococcus aureus subsp. aureus USA300_FPR3757 phosphatidate cytidylyltransferase YP_493851.1 1265178 D 451515 CDS YP_493852.1 87162424 3915271 1266324..1267508 1 NC_007793.1 identified by match to protein family HMM PF02163; putative membrane-associated zinc metalloprotease 1267508 3915271 SAUSA300_1155 Staphylococcus aureus subsp. aureus USA300_FPR3757 putative membrane-associated zinc metalloprotease YP_493852.1 1266324 D 451515 CDS YP_493853.1 87161679 3914444 1267528..1269231 1 NC_007793.1 catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase 1269231 proS 3914444 proS Staphylococcus aureus subsp. aureus USA300_FPR3757 prolyl-tRNA synthetase YP_493853.1 1267528 D 451515 CDS YP_493854.1 87161645 3913695 1269495..1273805 1 NC_007793.1 catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; required for leading strand synthesis; PolC exhibits 3' to 5' exonuclease activity; DNA polymerase III PolC 1273805 polC 3913695 polC Staphylococcus aureus subsp. aureus USA300_FPR3757 DNA polymerase III PolC YP_493854.1 1269495 D 451515 CDS YP_493855.1 87160896 3912973 1274095..1274562 1 NC_007793.1 in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins; hypothetical protein 1274562 3912973 SAUSA300_1158 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493855.1 1274095 D 451515 CDS YP_493856.1 87160356 3913230 1274583..1275758 1 NC_007793.1 modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; transcription elongation factor NusA 1275758 nusA 3913230 nusA Staphylococcus aureus subsp. aureus USA300_FPR3757 transcription elongation factor NusA YP_493856.1 1274583 D 451515 CDS YP_493857.1 87161407 3914095 1275779..1276063 1 NC_007793.1 identified by match to protein family HMM PF04296; hypothetical protein 1276063 3914095 SAUSA300_1160 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493857.1 1275779 D 451515 CDS YP_493858.1 87160048 3912901 1276060..1276377 1 NC_007793.1 identified by match to protein family HMM PF01248; ribosomal protein L7Ae 1276377 3912901 SAUSA300_1161 Staphylococcus aureus subsp. aureus USA300_FPR3757 ribosomal protein L7Ae YP_493858.1 1276060 D 451515 CDS YP_493859.1 87161873 3914561 1276382..1278499 1 NC_007793.1 Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 1278499 infB 3914561 infB Staphylococcus aureus subsp. aureus USA300_FPR3757 translation initiation factor IF-2 YP_493859.1 1276382 D 451515 CDS YP_493860.1 87161703 3914468 1278885..1279235 1 NC_007793.1 associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock; ribosome-binding factor A 1279235 rbfA 3914468 rbfA Staphylococcus aureus subsp. aureus USA300_FPR3757 ribosome-binding factor A YP_493860.1 1278885 D 451515 CDS YP_493861.1 87160954 3913794 1279404..1280321 1 NC_007793.1 catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs; tRNA pseudouridine synthase B 1280321 truB 3913794 truB Staphylococcus aureus subsp. aureus USA300_FPR3757 tRNA pseudouridine synthase B YP_493861.1 1279404 D 451515 CDS YP_493862.1 87161758 3913903 1280336..1281307 1 NC_007793.1 identified by match to protein family HMM PF01687; match to protein family HMM PF06574; match to protein family HMM TIGR00083; riboflavin biosynthesis protein ribF 1281307 ribF 3913903 ribF Staphylococcus aureus subsp. aureus USA300_FPR3757 riboflavin biosynthesis protein ribF YP_493862.1 1280336 D 451515 CDS YP_493863.1 87161591 3914375 1281422..1281691 1 NC_007793.1 primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 1281691 rpsO 3914375 rpsO Staphylococcus aureus subsp. aureus USA300_FPR3757 30S ribosomal protein S15 YP_493863.1 1281422 D 451515 CDS YP_493864.1 87160870 3914142 1282061..1284157 1 NC_007793.1 identified by match to protein family HMM PF00013; match to protein family HMM PF00575; match to protein family HMM PF01138; match to protein family HMM PF03725; match to protein family HMM PF03726; polynucleotide phosphorylase/polyadenylase 1284157 pnpA 3914142 pnpA Staphylococcus aureus subsp. aureus USA300_FPR3757 polynucleotide phosphorylase/polyadenylase YP_493864.1 1282061 D 451515 CDS YP_493865.1 87162301 3913610 1284342..1286066 1 NC_007793.1 identified by match to protein family HMM PF00753; match to protein family HMM PF07521; RNA-metabolising metallo-beta-lactamase 1286066 3913610 SAUSA300_1168 Staphylococcus aureus subsp. aureus USA300_FPR3757 RNA-metabolising metallo-beta-lactamase YP_493865.1 1284342 D 451515 CDS YP_493866.1 87161907 3912998 1286448..1288691 1 NC_007793.1 identified by match to protein family HMM PF01580; DNA translocase FtsK 1288691 ftsK 3912998 ftsK Staphylococcus aureus subsp. aureus USA300_FPR3757 DNA translocase FtsK YP_493866.1 1286448 D 451515 CDS YP_493867.1 87160196 3913264 1288696..1289409 1 NC_007793.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07702; GntR family transcriptional regulator 1289409 3913264 SAUSA300_1170 Staphylococcus aureus subsp. aureus USA300_FPR3757 GntR family transcriptional regulator YP_493867.1 1288696 D 451515 CDS YP_493868.1 87160793 3914613 1289440..1290705 1 NC_007793.1 identified by match to protein family HMM PF05193; hypothetical protein 1290705 3914613 SAUSA300_1171 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493868.1 1289440 D 451515 CDS YP_493869.1 87161659 3913161 1290705..1291991 1 NC_007793.1 identified by match to protein family HMM PF00675; match to protein family HMM PF05193; M16 family peptidase 1291991 3913161 SAUSA300_1172 Staphylococcus aureus subsp. aureus USA300_FPR3757 M16 family peptidase YP_493869.1 1290705 D 451515 CDS YP_493870.1 87162201 3914844 1291991..1292695 1 NC_007793.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01073; putative acetoacetyl-CoA reductase 1292695 3914844 SAUSA300_1173 Staphylococcus aureus subsp. aureus USA300_FPR3757 putative acetoacetyl-CoA reductase YP_493870.1 1291991 D 451515 CDS YP_493871.1 87160993 3913325 1292800..1293627 1 NC_007793.1 hypothetical protein 1293627 3913325 SAUSA300_1174 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493871.1 1292800 D 451515 CDS YP_493872.1 87161570 3913639 1293646..1294038 1 NC_007793.1 hypothetical protein 1294038 3913639 SAUSA300_1175 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493872.1 1293646 D 451515 CDS YP_493873.1 87161963 3914475 1294072..1294650 1 NC_007793.1 identified by match to protein family HMM PF01066; match to protein family HMM TIGR00560; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 1294650 pgsA 3914475 pgsA Staphylococcus aureus subsp. aureus USA300_FPR3757 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase YP_493873.1 1294072 D 451515 CDS YP_493874.1 87160437 3912940 1294877..1296028 1 NC_007793.1 identified by match to protein family HMM PF00994; match to protein family HMM TIGR00200; competence/damage-inducible protein cinA 1296028 cinA 3912940 cinA Staphylococcus aureus subsp. aureus USA300_FPR3757 competence/damage-inducible protein cinA YP_493874.1 1294877 D 451515 CDS YP_493875.2 229558720 3913385 1296193..1297236 1 NC_007793.1 catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs; recombinase A 1297236 recA 3913385 recA Staphylococcus aureus subsp. aureus USA300_FPR3757 recombinase A YP_493875.2 1296193 D 451515 CDS YP_493876.1 87161243 3914797 1297590..1299149 1 NC_007793.1 protein from Staphylococcus aureus has phosphodiesterase activity against 2'-3'-cAMP and 2'-3'-cGMP; phosphodiesterase 1299149 3914797 SAUSA300_1179 Staphylococcus aureus subsp. aureus USA300_FPR3757 phosphodiesterase YP_493876.1 1297590 D 451515 CDS YP_493877.1 87160683 3915060 complement(1299446..1299661) 1 NC_007793.1 hypothetical protein 1299661 3915060 SAUSA300_1180 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493877.1 1299446 R 451515 CDS YP_493878.1 87161286 3914705 1299835..1300632 1 NC_007793.1 identified by match to protein family HMM PF00149; match to protein family HMM TIGR00282; hypothetical protein 1300632 3914705 SAUSA300_1181 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493878.1 1299835 D 451515 CDS YP_493879.1 87161524 3913198 1300772..1302532 1 NC_007793.1 identified by match to protein family HMM PF01558; match to protein family HMM PF01855; pyruvate ferredoxin oxidoreductase, alpha subunit 1302532 3913198 SAUSA300_1182 Staphylococcus aureus subsp. aureus USA300_FPR3757 pyruvate ferredoxin oxidoreductase, alpha subunit YP_493879.1 1300772 D 451515 CDS YP_493880.1 87160150 3913120 1302533..1303399 1 NC_007793.1 catalyzes the coenzyme A dependent formation of succinyl-CoA from 2-oxoglutarate and ferredoxin; 2-oxoglutarate ferredoxin oxidoreductase subunit beta 1303399 3913120 SAUSA300_1183 Staphylococcus aureus subsp. aureus USA300_FPR3757 2-oxoglutarate ferredoxin oxidoreductase subunit beta YP_493880.1 1302533 D 451515 CDS YP_493881.1 87160199 3913072 1303493..1303786 1 NC_007793.1 hypothetical protein 1303786 3913072 SAUSA300_1184 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493881.1 1303493 D 451515 CDS YP_493882.1 87160782 3914602 1303920..1305464 1 NC_007793.1 catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A); (dimethylallyl)adenosine tRNA methylthiotransferase 1305464 miaB 3914602 miaB Staphylococcus aureus subsp. aureus USA300_FPR3757 (dimethylallyl)adenosine tRNA methylthiotransferase YP_493882.1 1303920 D 451515 CDS YP_493883.1 87161185 3914896 1305465..1305830 1 NC_007793.1 hypothetical protein 1305830 3914896 SAUSA300_1186 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493883.1 1305465 D 451515 CDS YP_493884.1 87162060 3914239 1305857..1306348 1 NC_007793.1 identified by match to protein family HMM TIGR02359; hypothetical protein 1306348 3914239 SAUSA300_1187 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493884.1 1305857 D 451515 CDS YP_493885.1 87160655 3913979 1306747..1309269 1 NC_007793.1 This protein performs the mismatch recognition step during the DNA repair process; DNA mismatch repair protein MutS 1309269 mutS 3913979 mutS Staphylococcus aureus subsp. aureus USA300_FPR3757 DNA mismatch repair protein MutS YP_493885.1 1306747 D 451515 CDS YP_493886.1 87161404 3914092 1309282..1311291 1 NC_007793.1 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex; DNA mismatch repair protein 1311291 mutL 3914092 mutL Staphylococcus aureus subsp. aureus USA300_FPR3757 DNA mismatch repair protein YP_493886.1 1309282 D 451515 CDS YP_493887.1 87162439 3915035 1311297..1311839 1 NC_007793.1 identified by match to protein family HMM PF04309; glycerol uptake operon antiterminator regulatory protein 1311839 glpP 3915035 glpP Staphylococcus aureus subsp. aureus USA300_FPR3757 glycerol uptake operon antiterminator regulatory protein YP_493887.1 1311297 D 451515 CDS YP_493888.1 87159933 3914979 1312304..1313122 1 NC_007793.1 identified by match to protein family HMM PF00230; match to protein family HMM TIGR00861; glycerol uptake facilitator 1313122 glpF 3914979 glpF Staphylococcus aureus subsp. aureus USA300_FPR3757 glycerol uptake facilitator YP_493888.1 1312304 D 451515 CDS YP_493889.1 87160364 3913238 1313251..1314747 1 NC_007793.1 Converts glycerol and ADP to glycerol-3-phosphate and ADP; glycerol kinase 1314747 glpK 3913238 glpK Staphylococcus aureus subsp. aureus USA300_FPR3757 glycerol kinase YP_493889.1 1313251 D 451515 CDS YP_493890.1 87161089 3914295 1314905..1316578 1 NC_007793.1 identified by match to protein family HMM PF01266; aerobic glycerol-3-phosphate dehydrogenase 1316578 glpD 3914295 glpD Staphylococcus aureus subsp. aureus USA300_FPR3757 aerobic glycerol-3-phosphate dehydrogenase YP_493890.1 1314905 D 451515 CDS YP_493891.1 87160747 3913410 1316728..1317642 1 NC_007793.1 identified by match to protein family HMM PF00561; alpha/beta fold family hydrolase 1317642 3913410 SAUSA300_1194 Staphylococcus aureus subsp. aureus USA300_FPR3757 alpha/beta fold family hydrolase YP_493891.1 1316728 D 451515 CDS YP_493892.1 87161422 3914071 1317660..1318595 1 NC_007793.1 IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity; tRNA delta(2)-isopentenylpyrophosphate transferase 1318595 miaA 3914071 miaA Staphylococcus aureus subsp. aureus USA300_FPR3757 tRNA delta(2)-isopentenylpyrophosphate transferase YP_493892.1 1317660 D 451515 CDS YP_493893.1 87160142 3913112 1318610..1318843 1 NC_007793.1 identified by match to protein family HMM PF01423; match to protein family HMM TIGR02383; RNA chaperone, host factor-1 protein 1318843 hfq 3913112 hfq Staphylococcus aureus subsp. aureus USA300_FPR3757 RNA chaperone, host factor-1 protein YP_493893.1 1318610 D 451515 CDS YP_493894.1 87160345 3915120 complement(1319065..1319541) 1 NC_007793.1 identified by match to protein family HMM PF00255; glutathione peroxidase 1319541 3915120 SAUSA300_1197 Staphylococcus aureus subsp. aureus USA300_FPR3757 glutathione peroxidase YP_493894.1 1319065 R 451515 CDS YP_493895.1 87160925 3914363 1319653..1320891 1 NC_007793.1 identified by match to protein family HMM PF01926; match to protein family HMM PF04471; putative GTP-binding protein 1320891 3914363 SAUSA300_1198 Staphylococcus aureus subsp. aureus USA300_FPR3757 putative GTP-binding protein YP_493895.1 1319653 D 451515 CDS YP_493896.1 87161818 3914654 1320910..1322148 1 NC_007793.1 identified by match to protein family HMM PF01053; match to protein family HMM PF06838; hypothetical protein 1322148 3914654 SAUSA300_1199 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493896.1 1320910 D 451515 CDS YP_493897.1 87160288 3913495 1322391..1322759 1 NC_007793.1 identified by match to protein family HMM PF00376; glutamine synthetase repressor 1322759 glnR 3913495 glnR Staphylococcus aureus subsp. aureus USA300_FPR3757 glutamine synthetase repressor YP_493897.1 1322391 D 451515 CDS YP_493898.1 87160969 3915364 1322778..1324118 1 NC_007793.1 identified by match to protein family HMM PF00120; match to protein family HMM PF03951; match to protein family HMM TIGR00653; glutamine synthetase, type I 1324118 glnA 3915364 glnA Staphylococcus aureus subsp. aureus USA300_FPR3757 glutamine synthetase, type I YP_493898.1 1322778 D 451515 CDS YP_493899.1 87161382 3914152 1325509..1325721 1 NC_007793.1 hypothetical protein 1325721 3914152 SAUSA300_1202 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493899.1 1325509 D 451515 CDS YP_493900.1 87162051 3914327 1326015..1326221 1 NC_007793.1 hypothetical protein 1326221 3914327 SAUSA300_1203 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493900.1 1326015 D 451515 CDS YP_493901.1 87160777 3913752 1327460..1327645 1 NC_007793.1 hypothetical protein 1327645 3913752 SAUSA300_1204 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493901.1 1327460 D 451515 CDS YP_493902.1 87162154 3914701 1328157..1328261 1 NC_007793.1 hypothetical protein 1328261 3914701 SAUSA300_1205 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493902.1 1328157 D 451515 CDS YP_493903.1 87161302 3914798 1328390..1328641 1 NC_007793.1 hypothetical protein 1328641 3914798 SAUSA300_1206 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493903.1 1328390 D 451515 CDS YP_493904.1 87160706 3912821 1328687..1329271 1 NC_007793.1 identified by match to protein family HMM TIGR01641; hypothetical protein 1329271 3912821 SAUSA300_1207 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493904.1 1328687 D 451515 CDS YP_493905.1 87160480 3913335 1329392..1329640 1 NC_007793.1 hypothetical protein 1329640 3913335 SAUSA300_1208 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493905.1 1329392 D 451515 CDS YP_493906.1 87160494 3915084 1330520..1330654 1 NC_007793.1 hypothetical protein 1330654 3915084 SAUSA300_1209 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493906.1 1330520 D 451515 CDS YP_493907.1 87160139 3912992 1330746..1331036 1 NC_007793.1 hypothetical protein 1331036 3912992 SAUSA300_1210 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493907.1 1330746 D 451515 CDS YP_493908.1 87161651 3913153 1331047..1331241 1 NC_007793.1 hypothetical protein 1331241 3913153 SAUSA300_1211 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493908.1 1331047 D 451515 CDS YP_493909.1 87161445 3914118 1331291..1331632 1 NC_007793.1 hypothetical protein 1331632 3914118 SAUSA300_1212 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493909.1 1331291 D 451515 CDS YP_493910.1 87160852 3913398 1331639..1331830 1 NC_007793.1 hypothetical protein 1331830 3913398 SAUSA300_1213 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493910.1 1331639 D 451515 CDS YP_493911.1 87162019 3914276 complement(1332379..1333404) 1 NC_007793.1 identified by match to protein family HMM PF01212; hypothetical protein 1333404 3914276 SAUSA300_1214 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493911.1 1332379 R 451515 CDS YP_493912.1 87161468 3914059 1333674..1333871 1 NC_007793.1 hypothetical protein 1333871 3914059 SAUSA300_1215 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493912.1 1333674 D 451515 CDS YP_493913.1 87161777 3913631 1333929..1335410 1 NC_007793.1 identified by match to protein family HMM PF00614; cardiolipin synthetase 1335410 3913631 SAUSA300_1216 Staphylococcus aureus subsp. aureus USA300_FPR3757 cardiolipin synthetase YP_493913.1 1333929 D 451515 CDS YP_493914.1 87159992 3914420 1335585..1336493 1 NC_007793.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 1336493 3914420 SAUSA300_1217 Staphylococcus aureus subsp. aureus USA300_FPR3757 ABC transporter ATP-binding protein YP_493914.1 1335585 D 451515 CDS YP_493915.1 87162351 3914200 1336462..1337193 1 NC_007793.1 identified by match to protein family HMM PF01061; ABC transporter permease 1337193 3914200 SAUSA300_1218 Staphylococcus aureus subsp. aureus USA300_FPR3757 ABC transporter permease YP_493915.1 1336462 D 451515 CDS YP_493916.1 87161561 3915176 1337197..1338288 1 NC_007793.1 identified by match to protein family HMM PF02518; match to protein family HMM PF07730; putative sensor histidine kinase 1338288 3915176 SAUSA300_1219 Staphylococcus aureus subsp. aureus USA300_FPR3757 putative sensor histidine kinase YP_493916.1 1337197 D 451515 CDS YP_493917.1 87161199 3914910 1338285..1338887 1 NC_007793.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00196; LuxR family DNA-binding response regulator 1338887 3914910 SAUSA300_1220 Staphylococcus aureus subsp. aureus USA300_FPR3757 LuxR family DNA-binding response regulator YP_493917.1 1338285 D 451515 CDS YP_493918.1 87160475 3913330 complement(1339000..1339188) 1 NC_007793.1 hypothetical protein 1339188 3913330 SAUSA300_1221 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493918.1 1339000 R 451515 CDS YP_493919.1 87160344 3915119 1339327..1339860 1 NC_007793.1 identified by match to protein family HMM PF00565; thermonuclease 1339860 nuc 3915119 nuc Staphylococcus aureus subsp. aureus USA300_FPR3757 thermonuclease YP_493919.1 1339327 D 451515 CDS YP_493920.1 87160914 3915165 complement(1340003..1340857) 1 NC_007793.1 hypothetical protein 1340857 3915165 SAUSA300_1223 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493920.1 1340003 R 451515 CDS YP_493921.1 87160355 3913229 1341188..1341763 1 NC_007793.1 hypothetical protein 1341763 3913229 SAUSA300_1224 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493921.1 1341188 D 451515 CDS YP_493922.1 87162346 3913830 complement(1341817..1343199) 1 NC_007793.1 catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; lysine and threonine sensitive; aspartate kinase 1343199 3913830 SAUSA300_1225 Staphylococcus aureus subsp. aureus USA300_FPR3757 aspartate kinase YP_493922.1 1341817 R 451515 CDS YP_493923.1 87161755 3913900 1343390..1344670 1 NC_007793.1 catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine; homoserine dehydrogenase 1344670 3913900 SAUSA300_1226 Staphylococcus aureus subsp. aureus USA300_FPR3757 homoserine dehydrogenase YP_493923.1 1343390 D 451515 CDS YP_493924.1 87160676 3915053 1344676..1345737 1 NC_007793.1 catalyzes the formation of L-threonine from O-phospho-L-homoserine; threonine synthase 1345737 thrC 3915053 thrC Staphylococcus aureus subsp. aureus USA300_FPR3757 threonine synthase YP_493924.1 1344676 D 451515 CDS YP_493925.1 87159971 3914823 1345739..1346653 1 NC_007793.1 catalyzes the formation of O-phospho-L-homoserine from L-homoserine in threonine biosynthesis from asparate; homoserine kinase 1346653 thrB 3914823 thrB Staphylococcus aureus subsp. aureus USA300_FPR3757 homoserine kinase YP_493925.1 1345739 D 451515 CDS YP_493926.1 87161978 3914490 1346711..1347514 1 NC_007793.1 identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484; HAD superfamily hydrolase 1347514 3914490 SAUSA300_1229 Staphylococcus aureus subsp. aureus USA300_FPR3757 HAD superfamily hydrolase YP_493926.1 1346711 D 451515 CDS YP_493927.1 87161377 3914776 complement(1347807..1348121) 1 NC_007793.1 hypothetical protein 1348121 3914776 SAUSA300_1230 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493927.1 1347807 R 451515 CDS YP_493928.1 87159957 3913844 complement(1348339..1349793) 1 NC_007793.1 identified by match to protein family HMM PF00324; gamma-aminobutyrate permease 1349793 3913844 SAUSA300_1231 Staphylococcus aureus subsp. aureus USA300_FPR3757 gamma-aminobutyrate permease YP_493928.1 1348339 R 451515 CDS YP_493929.1 87160511 3914723 1349997..1351514 1 NC_007793.1 identified by match to protein family HMM PF00199; catalase 1351514 3914723 SAUSA300_1232 Staphylococcus aureus subsp. aureus USA300_FPR3757 catalase YP_493929.1 1349997 D 451515 CDS YP_493930.2 162138556 3914217 1351605..1351754 1 NC_007793.1 in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif; 50S ribosomal protein L33 1351754 rpmG 3914217 rpmG Staphylococcus aureus subsp. aureus USA300_FPR3757 50S ribosomal protein L33 YP_493930.2 1351605 D 451515 CDS YP_493931.1 87161317 3914814 1352208..1352477 1 NC_007793.1 located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif; 30S ribosomal protein S14 1352477 rpsN 3914814 rpsN Staphylococcus aureus subsp. aureus USA300_FPR3757 30S ribosomal protein S14 YP_493931.1 1352208 D 451515 CDS YP_493932.1 87160590 3915209 1352634..1353611 1 NC_007793.1 identified by match to protein family HMM PF00478; match to protein family HMM TIGR01306; guanosine 5'-monophosphate oxidoreductase 1353611 guaC 3915209 guaC Staphylococcus aureus subsp. aureus USA300_FPR3757 guanosine 5'-monophosphate oxidoreductase YP_493932.1 1352634 D 451515 CDS YP_493933.1 87160173 3914525 1353786..1354649 1 NC_007793.1 identified by match to protein family HMM PF00188; hypothetical protein 1354649 3914525 SAUSA300_1236 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493933.1 1353786 D 451515 CDS YP_493934.1 87161767 3913621 complement(1355029..1355652) 1 NC_007793.1 Represses a number of genes involved in the response to DNA damage; LexA repressor 1355652 lexA 3913621 lexA Staphylococcus aureus subsp. aureus USA300_FPR3757 LexA repressor YP_493934.1 1355029 R 451515 CDS YP_493935.1 87160891 3912968 1356164..1356403 1 NC_007793.1 identified by match to protein family HMM PF05979; hypothetical protein 1356403 3912968 SAUSA300_1238 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493935.1 1356164 D 451515 CDS YP_493936.1 87161301 3914720 1356635..1358512 1 NC_007793.1 identified by match to protein family HMM PF00456; match to protein family HMM PF02779; match to protein family HMM PF02780; match to protein family HMM TIGR00232; transketolase 1358512 tkt 3914720 tkt Staphylococcus aureus subsp. aureus USA300_FPR3757 transketolase YP_493936.1 1356635 D 451515 CDS YP_493937.1 87160745 3913408 1358745..1359032 1 NC_007793.1 identified by match to protein family HMM PF03672; hypothetical protein 1359032 3913408 SAUSA300_1240 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493937.1 1358745 D 451515 CDS YP_493938.1 87160220 3913758 1359250..1359678 1 NC_007793.1 identified by match to protein family HMM PF07301; hypothetical protein 1359678 3913758 SAUSA300_1241 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493938.1 1359250 D 451515 CDS YP_493939.1 87160608 3913269 1359802..1360923 1 NC_007793.1 identified by match to protein family HMM PF00149; match to protein family HMM TIGR00619; exonuclease SbcD 1360923 sbcD 3913269 sbcD Staphylococcus aureus subsp. aureus USA300_FPR3757 exonuclease SbcD YP_493939.1 1359802 D 451515 CDS YP_493940.1 87160359 3913233 1360927..1363956 1 NC_007793.1 exonuclease SbcC 1363956 sbcC 3913233 sbcC Staphylococcus aureus subsp. aureus USA300_FPR3757 exonuclease SbcC YP_493940.1 1360927 D 451515 CDS YP_493941.1 87160889 3912966 complement(1364027..1364464) 1 NC_007793.1 forms homopentamer; channel that opens in response to pressure or hypoosmotic shock; large-conductance mechanosensitive channel 1364464 mscL 3912966 mscL Staphylococcus aureus subsp. aureus USA300_FPR3757 large-conductance mechanosensitive channel YP_493941.1 1364027 R 451515 CDS YP_493942.1 87161810 3914646 1364593..1366239 1 NC_007793.1 identified by match to protein family HMM PF02028; match to protein family HMM TIGR00842; glycine betaine transporter opuD 1366239 opuD 3914646 opuD Staphylococcus aureus subsp. aureus USA300_FPR3757 glycine betaine transporter opuD YP_493942.1 1364593 D 451515 CDS YP_493943.1 87162359 3914208 1367131..1369836 1 NC_007793.1 Catalyzes the conversion of citrate to isocitrate; aconitate hydratase 1369836 acnA 3914208 acnA Staphylococcus aureus subsp. aureus USA300_FPR3757 aconitate hydratase YP_493943.1 1367131 D 451515 CDS YP_493944.1 87160577 3915003 1370016..1370483 1 NC_007793.1 identified by match to protein family HMM PF03061; match to protein family HMM TIGR00051; hypothetical protein 1370483 3915003 SAUSA300_1247 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493944.1 1370016 D 451515 CDS YP_493945.1 87161214 3912789 complement(1370690..1370986) 1 NC_007793.1 identified by match to protein family HMM PF01521; hypothetical protein 1370986 3912789 SAUSA300_1248 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493945.1 1370690 R 451515 CDS YP_493946.1 87161949 3913706 complement(1371362..1371970) 1 NC_007793.1 identified by match to protein family HMM PF02660; match to protein family HMM TIGR00023; hypothetical protein 1371970 3913706 SAUSA300_1249 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493946.1 1371362 R 451515 CDS YP_493947.1 87160112 3913375 1372170..1374167 1 NC_007793.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit B 1374167 parE 3913375 parE Staphylococcus aureus subsp. aureus USA300_FPR3757 DNA topoisomerase IV subunit B YP_493947.1 1372170 D 451515 CDS YP_493948.1 87160035 3913356 1374167..1376569 1 NC_007793.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit A 1376569 parC 3913356 parC Staphylococcus aureus subsp. aureus USA300_FPR3757 DNA topoisomerase IV subunit A YP_493948.1 1374167 D 451515 CDS YP_493949.1 87162104 3913098 1376819..1378279 1 NC_007793.1 identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835; amino acid carrier protein 1378279 3913098 SAUSA300_1252 Staphylococcus aureus subsp. aureus USA300_FPR3757 amino acid carrier protein YP_493949.1 1376819 D 451515 CDS YP_493950.1 87161051 3912761 1378770..1379630 1 NC_007793.1 identified by match to protein family HMM PF00874; match to protein family HMM PF03123; transcription antiterminator 1379630 glcT 3912761 glcT Staphylococcus aureus subsp. aureus USA300_FPR3757 transcription antiterminator YP_493950.1 1378770 D 451515 CDS YP_493951.1 87160805 3913037 1379765..1380973 1 NC_007793.1 identified by match to protein family HMM PF01594; hypothetical protein 1380973 3913037 SAUSA300_1254 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493951.1 1379765 D 451515 CDS YP_493952.1 87161222 3912797 1381454..1383976 1 NC_007793.1 identified by match to protein family HMM PF04329; match to protein family HMM PF04330; match to protein family HMM PF04331; oxacillin resistance-related FmtC protein 1383976 fmtC 3912797 fmtC Staphylococcus aureus subsp. aureus USA300_FPR3757 oxacillin resistance-related FmtC protein YP_493952.1 1381454 D 451515 CDS YP_493953.1 87160293 3913501 complement(1384179..1384688) 1 NC_007793.1 this stereospecific enzymes reduces the S isomer of methionine sulfoxide while MsrB reduces the R form; provides protection against oxidative stress; methionine sulfoxide reductase A 1384688 msrA 3913501 msrA Staphylococcus aureus subsp. aureus USA300_FPR3757 methionine sulfoxide reductase A YP_493953.1 1384179 R 451515 CDS YP_493954.1 87160079 3913303 1384825..1385808 1 NC_007793.1 identified by match to protein family HMM PF03816; match to protein family HMM TIGR00350; peptide methionine sulfoxide reductase regulator MsrR 1385808 msrR 3913303 msrR Staphylococcus aureus subsp. aureus USA300_FPR3757 peptide methionine sulfoxide reductase regulator MsrR YP_493954.1 1384825 D 451515 CDS YP_493955.1 87161078 3914264 complement(1385896..1386081) 1 NC_007793.1 identified by match to protein family HMM PF01361; match to protein family HMM TIGR00013; 4-oxalocrotonate tautomerase 1386081 3914264 SAUSA300_1258 Staphylococcus aureus subsp. aureus USA300_FPR3757 4-oxalocrotonate tautomerase YP_493955.1 1385896 R 451515 CDS YP_493956.1 87160479 3913334 1386229..1387491 1 NC_007793.1 identified by match to protein family HMM PF00817; ImpB/MucB/SamB family protein 1387491 3913334 SAUSA300_1259 Staphylococcus aureus subsp. aureus USA300_FPR3757 ImpB/MucB/SamB family protein YP_493956.1 1386229 D 451515 CDS YP_493957.1 87160131 3912984 complement(1387628..1388719) 1 NC_007793.1 catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate; prephenate dehydrogenase 1388719 3912984 SAUSA300_1260 Staphylococcus aureus subsp. aureus USA300_FPR3757 prephenate dehydrogenase YP_493957.1 1387628 R 451515 CDS YP_493958.1 87161125 3914351 1388884..1389915 1 NC_007793.1 identified by match to protein family HMM PF05343; putative glutamyl aminopeptidase 1389915 3914351 SAUSA300_1261 Staphylococcus aureus subsp. aureus USA300_FPR3757 putative glutamyl aminopeptidase YP_493958.1 1388884 D 451515 CDS YP_493959.1 87161908 3912999 1390407..1391813 1 NC_007793.1 with component II, the glutamine amidotransferase, catalyzes the formation of anthranilate from chorismate and glutamine; anthranilate synthase component I 1391813 trpE 3912999 trpE Staphylococcus aureus subsp. aureus USA300_FPR3757 anthranilate synthase component I YP_493959.1 1390407 D 451515 CDS YP_493960.1 87160209 3913082 1391810..1392376 1 NC_007793.1 identified by match to protein family HMM PF00117; match to protein family HMM TIGR00566; anthranilate synthase component II 1392376 trpG 3913082 trpG Staphylococcus aureus subsp. aureus USA300_FPR3757 anthranilate synthase component II YP_493960.1 1391810 D 451515 CDS YP_493961.1 87161557 3915172 1392382..1393380 1 NC_007793.1 Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate; anthranilate phosphoribosyltransferase 1393380 trpD 3915172 trpD Staphylococcus aureus subsp. aureus USA300_FPR3757 anthranilate phosphoribosyltransferase YP_493961.1 1392382 D 451515 CDS YP_493962.1 87162189 3913886 1393382..1394164 1 NC_007793.1 involved in tryptophan biosynthesis; amino acid biosynthesis; converts 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate to C(1)-(3-indolyl)-glycerol 3-phosphate and carbon dioxide and water; indole-3-glycerol-phosphate synthase 1394164 trpC 3913886 trpC Staphylococcus aureus subsp. aureus USA300_FPR3757 indole-3-glycerol-phosphate synthase YP_493962.1 1393382 D 451515 CDS YP_493963.1 87162318 3913452 1394164..1394796 1 NC_007793.1 catalyzes the formation of 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate from N-(5-phospho-beta-D-ribosyl)-anthranilate in tryptophan biosynthesis; N-(5'-phosphoribosyl)anthranilate isomerase 1394796 trpF 3913452 trpF Staphylococcus aureus subsp. aureus USA300_FPR3757 N-(5'-phosphoribosyl)anthranilate isomerase YP_493963.1 1394164 D 451515 CDS YP_493964.1 87160270 3913672 1394789..1396003 1 NC_007793.1 catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta 1396003 trpB 3913672 trpB Staphylococcus aureus subsp. aureus USA300_FPR3757 tryptophan synthase subunit beta YP_493964.1 1394789 D 451515 CDS YP_493965.1 87160526 3914738 1395996..1396724 1 NC_007793.1 catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis; tryptophan synthase subunit alpha 1396724 trpA 3914738 trpA Staphylococcus aureus subsp. aureus USA300_FPR3757 tryptophan synthase subunit alpha YP_493965.1 1395996 D 451515 CDS YP_493966.1 87161262 3913871 1397007..1398308 1 NC_007793.1 identified by match to protein family HMM PF02388; methicillin resistance protein FemA 1398308 femA 3913871 femA Staphylococcus aureus subsp. aureus USA300_FPR3757 methicillin resistance protein FemA YP_493966.1 1397007 D 451515 CDS YP_493967.1 87160888 3912965 1398327..1399586 1 NC_007793.1 identified by match to protein family HMM PF02388; methicillin resistance protein FemB 1399586 femB 3912965 femB Staphylococcus aureus subsp. aureus USA300_FPR3757 methicillin resistance protein FemB YP_493967.1 1398327 D 451515 CDS YP_493968.1 87162118 3913582 1400275..1401042 1 NC_007793.1 identified by match to protein family HMM TIGR00099; match to protein family HMM TIGR01484; hydrolase-like protein 1401042 3913582 SAUSA300_1271 Staphylococcus aureus subsp. aureus USA300_FPR3757 hydrolase-like protein YP_493968.1 1400275 D 451515 CDS YP_493969.1 87160243 3915134 complement(1401090..1401563) 1 NC_007793.1 identified by match to protein family HMM PF04434; hypothetical protein 1401563 3915134 SAUSA300_1272 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493969.1 1401090 R 451515 CDS YP_493970.1 87160959 3915354 complement(1401687..1402388) 1 NC_007793.1 identified by match to protein family HMM PF00005; oligopeptide permease, ATP-binding protein 1402388 opp-2F 3915354 opp-2F Staphylococcus aureus subsp. aureus USA300_FPR3757 oligopeptide permease, ATP-binding protein YP_493970.1 1401687 R 451515 CDS YP_493971.1 87161003 3913569 complement(1402381..1403154) 1 NC_007793.1 identified by match to protein family HMM PF00005; peptide ABC transporter ATP-binding protein 1403154 3913569 SAUSA300_1274 Staphylococcus aureus subsp. aureus USA300_FPR3757 peptide ABC transporter ATP-binding protein YP_493971.1 1402381 R 451515 CDS YP_493972.1 87162058 3914237 complement(1403141..1403971) 1 NC_007793.1 identified by match to protein family HMM PF00528; peptide ABC transporter permease 1403971 3914237 SAUSA300_1275 Staphylococcus aureus subsp. aureus USA300_FPR3757 peptide ABC transporter permease YP_493972.1 1403141 R 451515 CDS YP_493973.1 87159892 3914938 complement(1403964..1404950) 1 NC_007793.1 identified by match to protein family HMM PF00528; oligopeptide permease, channel-forming protein 1404950 opp-2B 3914938 opp-2B Staphylococcus aureus subsp. aureus USA300_FPR3757 oligopeptide permease, channel-forming protein YP_493973.1 1403964 R 451515 CDS YP_493974.1 87160598 3915217 complement(1405254..1405598) 1 NC_007793.1 hypothetical protein 1405598 3915217 SAUSA300_1277 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493974.1 1405254 R 451515 CDS YP_493975.1 87161627 3913482 1405803..1407617 1 NC_007793.1 identified by match to protein family HMM PF01432; match to protein family HMM TIGR00181; oligoendopeptidase F 1407617 pepF 3913482 pepF Staphylococcus aureus subsp. aureus USA300_FPR3757 oligoendopeptidase F YP_493975.1 1405803 D 451515 CDS YP_493976.1 87162342 3913826 complement(1407757..1408398) 1 NC_007793.1 identified by match to protein family HMM PF01895; match to protein family HMM TIGR02135; phosphate transport system regulatory protein PhoU 1408398 phoU 3913826 phoU Staphylococcus aureus subsp. aureus USA300_FPR3757 phosphate transport system regulatory protein PhoU YP_493976.1 1407757 R 451515 CDS YP_493977.1 87160416 3913134 complement(1408405..1409256) 1 NC_007793.1 ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation; phosphate transporter ATP-binding protein 1409256 pstB 3913134 pstB Staphylococcus aureus subsp. aureus USA300_FPR3757 phosphate transporter ATP-binding protein YP_493977.1 1408405 R 451515 CDS YP_493978.1 87160734 3913435 complement(1409303..1410220) 1 NC_007793.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR00974; phosphate ABC transporter permease PstA 1410220 pstA 3913435 pstA Staphylococcus aureus subsp. aureus USA300_FPR3757 phosphate ABC transporter permease PstA YP_493978.1 1409303 R 451515 CDS YP_493979.1 87160125 3912978 complement(1410222..1411148) 1 NC_007793.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR02138; phosphate ABC transporter permease PstC 1411148 pstC 3912978 pstC Staphylococcus aureus subsp. aureus USA300_FPR3757 phosphate ABC transporter permease PstC YP_493979.1 1410222 R 451515 CDS YP_493980.1 87161503 3913216 complement(1411339..1412322) 1 NC_007793.1 identified by match to protein family HMM PF01547; match to protein family HMM TIGR02136; phosphate ABC transporter phosphate-binding protein PstS 1412322 pstS 3913216 pstS Staphylococcus aureus subsp. aureus USA300_FPR3757 phosphate ABC transporter phosphate-binding protein PstS YP_493980.1 1411339 R 451515 CDS YP_493981.1 87162259 3913177 complement(1413294..1414196) 1 NC_007793.1 hypothetical protein 1414196 3913177 SAUSA300_1284 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493981.1 1413294 R 451515 CDS YP_493982.1 87160383 3912809 1414343..1415944 1 NC_007793.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 1415944 3912809 SAUSA300_1285 Staphylococcus aureus subsp. aureus USA300_FPR3757 ABC transporter ATP-binding protein YP_493982.1 1414343 D 451515 CDS YP_493983.1 87161121 3914347 1416804..1418009 1 NC_007793.1 catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP, in Bacillus, lysine sensitive; regulated by response to starvation.; aspartate kinase 1418009 3914347 SAUSA300_1286 Staphylococcus aureus subsp. aureus USA300_FPR3757 aspartate kinase YP_493983.1 1416804 D 451515 CDS YP_493984.1 87161945 3913702 1418073..1419062 1 NC_007793.1 identified by match to protein family HMM PF01118; match to protein family HMM PF02774; match to protein family HMM TIGR01296; aspartate semialdehyde dehydrogenase 1419062 asd 3913702 asd Staphylococcus aureus subsp. aureus USA300_FPR3757 aspartate semialdehyde dehydrogenase YP_493984.1 1418073 D 451515 CDS YP_493985.1 87159991 3914419 1419064..1419951 1 NC_007793.1 catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase 1419951 dapA 3914419 dapA Staphylococcus aureus subsp. aureus USA300_FPR3757 dihydrodipicolinate synthase YP_493985.1 1419064 D 451515 CDS YP_493986.1 87161868 3914556 1419948..1420670 1 NC_007793.1 catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate reductase 1420670 dapB 3914556 dapB Staphylococcus aureus subsp. aureus USA300_FPR3757 dihydrodipicolinate reductase YP_493986.1 1419948 D 451515 CDS YP_493987.1 87162006 3915377 1420697..1421416 1 NC_007793.1 identified by match to protein family HMM PF00132; tetrahydrodipicolinate acetyltransferase 1421416 dapD 3915377 dapD Staphylococcus aureus subsp. aureus USA300_FPR3757 tetrahydrodipicolinate acetyltransferase YP_493987.1 1420697 D 451515 CDS YP_493988.1 87161473 3914064 1421559..1422710 1 NC_007793.1 identified by match to protein family HMM PF01546; match to protein family HMM TIGR01891; hippurate hydrolase 1422710 3914064 SAUSA300_1291 Staphylococcus aureus subsp. aureus USA300_FPR3757 hippurate hydrolase YP_493988.1 1421559 D 451515 CDS YP_493989.1 87161172 3914746 1422715..1423800 1 NC_007793.1 identified by match to protein family HMM PF00842; match to protein family HMM PF01168; alanine racemase 1423800 alr2 3914746 alr2 Staphylococcus aureus subsp. aureus USA300_FPR3757 alanine racemase YP_493989.1 1422715 D 451515 CDS YP_493990.1 87160810 3913042 1423790..1425055 1 NC_007793.1 identified by match to protein family HMM PF00278; match to protein family HMM PF02784; match to protein family HMM TIGR01048; diaminopimelate decarboxylase 1425055 lysA 3913042 lysA Staphylococcus aureus subsp. aureus USA300_FPR3757 diaminopimelate decarboxylase YP_493990.1 1423790 D 451515 CDS YP_493991.1 87160065 3913289 complement(1425295..1425696) 1 NC_007793.1 hypothetical protein 1425696 3913289 SAUSA300_1294 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493991.1 1425295 R 451515 CDS YP_493992.1 87161577 3913646 complement(1425893..1426093) 1 NC_007793.1 identified by match to protein family HMM PF00313; CSD family cold shock protein 1426093 3913646 SAUSA300_1295 Staphylococcus aureus subsp. aureus USA300_FPR3757 CSD family cold shock protein YP_493992.1 1425893 R 451515 CDS YP_493993.1 87160567 3914993 complement(1426264..1426572) 1 NC_007793.1 hypothetical protein 1426572 3914993 SAUSA300_1296 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493993.1 1426264 R 451515 CDS YP_493994.1 87160013 3912924 1426735..1427004 1 NC_007793.1 catalyzes the hydrolysis of acylphosphate; acylphosphatase 1427004 3912924 SAUSA300_1297 Staphylococcus aureus subsp. aureus USA300_FPR3757 acylphosphatase YP_493994.1 1426735 D 451515 CDS YP_493995.1 87161708 3915274 1427023..1427652 1 NC_007793.1 hypothetical protein 1427652 3915274 SAUSA300_1298 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493995.1 1427023 D 451515 CDS YP_493996.1 87160884 3912961 1427684..1428820 1 NC_007793.1 identified by match to protein family HMM PF05816; putative tellurite resistance protein 1428820 3912961 SAUSA300_1299 Staphylococcus aureus subsp. aureus USA300_FPR3757 putative tellurite resistance protein YP_493996.1 1427684 D 451515 CDS YP_493997.1 87162244 3914869 complement(1429833..1431176) 1 NC_007793.1 identified by match to protein family HMM PF05525; match to protein family HMM TIGR00796; branched-chain amino acid transport system II carrier protein 1431176 brnQ 3914869 brnQ Staphylococcus aureus subsp. aureus USA300_FPR3757 branched-chain amino acid transport system II carrier protein YP_493997.1 1429833 R 451515 CDS YP_493998.1 87160418 3913136 complement(1431401..1433287) 1 NC_007793.1 hypothetical protein 1433287 3913136 SAUSA300_1301 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_493998.1 1431401 R 451515 CDS YP_493999.1 87160819 3913051 complement(1433301..1434092) 1 NC_007793.1 identified by match to protein family HMM PF07726; match to protein family HMM PF07728; ATPase family protein 1434092 3913051 SAUSA300_1302 Staphylococcus aureus subsp. aureus USA300_FPR3757 ATPase family protein YP_493999.1 1433301 R 451515 CDS YP_494000.1 87161601 3914385 complement(1434273..1434476) 1 NC_007793.1 hypothetical protein 1434476 3914385 SAUSA300_1303 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494000.1 1434273 R 451515 CDS YP_494001.1 87161360 3914759 complement(1434505..1435314) 1 NC_007793.1 identified by match to protein family HMM PF00903; hypothetical protein 1435314 3914759 SAUSA300_1304 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494001.1 1434505 R 451515 CDS YP_494002.1 87162109 3913103 complement(1435894..1437162) 1 NC_007793.1 component of 2-oxoglutarate dehydrogenase complex; catalyzes the transfer of succinyl coenzyme A to form succinyl CoA as part of the conversion of 2-oxoglutarate to succinyl-CoA; dihydrolipoamide succinyltransferase 1437162 sucB 3913103 sucB Staphylococcus aureus subsp. aureus USA300_FPR3757 dihydrolipoamide succinyltransferase YP_494002.1 1435894 R 451515 CDS YP_494003.1 87159912 3914958 complement(1437176..1439974) 1 NC_007793.1 SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide; 2-oxoglutarate dehydrogenase E1 component 1439974 sucA 3914958 sucA Staphylococcus aureus subsp. aureus USA300_FPR3757 2-oxoglutarate dehydrogenase E1 component YP_494003.1 1437176 R 451515 CDS YP_494004.1 87160613 3913274 complement(1440258..1441613) 1 NC_007793.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; sensor histidine kinase protein 1441613 arlS 3913274 arlS Staphylococcus aureus subsp. aureus USA300_FPR3757 sensor histidine kinase protein YP_494004.1 1440258 R 451515 CDS YP_494005.1 87161474 3914065 complement(1441610..1442269) 1 NC_007793.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator 1442269 arlR 3914065 arlR Staphylococcus aureus subsp. aureus USA300_FPR3757 DNA-binding response regulator YP_494005.1 1441610 R 451515 CDS YP_494006.1 87162231 3914007 1443183..1443668 1 NC_007793.1 identified by match to protein family HMM PF01797; IS200 family transposase 1443668 3914007 SAUSA300_1309 Staphylococcus aureus subsp. aureus USA300_FPR3757 IS200 family transposase YP_494006.1 1443183 D 451515 CDS YP_494007.1 87161467 3914058 complement(1443799..1444413) 1 NC_007793.1 identified by match to protein family HMM PF01569; hypothetical protein 1444413 3914058 SAUSA300_1310 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494007.1 1443799 R 451515 CDS YP_494008.1 87162086 3914629 complement(1444430..1445500) 1 NC_007793.1 UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase 1445500 murG 3914629 murG Staphylococcus aureus subsp. aureus USA300_FPR3757 undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase YP_494008.1 1444430 R 451515 CDS YP_494009.1 87159951 3913838 complement(1445512..1446021) 1 NC_007793.1 identified by match to protein family HMM PF00583; acetyltransferase 1446021 3913838 SAUSA300_1312 Staphylococcus aureus subsp. aureus USA300_FPR3757 acetyltransferase YP_494009.1 1445512 R 451515 CDS YP_494010.1 87160602 3915221 complement(1446421..1447911) 1 NC_007793.1 identified by match to protein family HMM PF00595; match to protein family HMM PF01471; match to protein family HMM PF03572; match to protein family HMM TIGR00225; carboxyl-terminal protease 1447911 ctpA 3915221 ctpA Staphylococcus aureus subsp. aureus USA300_FPR3757 carboxyl-terminal protease YP_494010.1 1446421 R 451515 CDS YP_494011.1 87161711 3915277 complement(1448103..1448324) 1 NC_007793.1 identified by match to protein family HMM PF06855; hypothetical protein 1448324 3915277 SAUSA300_1314 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494011.1 1448103 R 451515 CDS YP_494012.1 87162382 3913535 complement(1448324..1448824) 1 NC_007793.1 identified by match to protein family HMM PF00358; match to protein family HMM TIGR00830; PTS system, glucose-specific IIA component 1448824 crr 3913535 crr Staphylococcus aureus subsp. aureus USA300_FPR3757 PTS system, glucose-specific IIA component YP_494012.1 1448324 R 451515 CDS YP_494013.1 87161086 3914272 complement(1448836..1449264) 1 NC_007793.1 this stereospecific enzymes reduces the R isomer of methionine sulfoxide while MsrA reduces the S form; provides protection against oxidative stress; methionine sulfoxide reductase B 1449264 msrB 3914272 msrB Staphylococcus aureus subsp. aureus USA300_FPR3757 methionine sulfoxide reductase B YP_494013.1 1448836 R 451515 CDS YP_494014.1 87160485 3913340 complement(1449257..1449790) 1 NC_007793.1 this stereospecific enzymes reduces the S isomer of methionine sulfoxide while MsrB reduces the R form; provides protection against oxidative stress; methionine sulfoxide reductase A 1449790 msrA 3913340 msrA Staphylococcus aureus subsp. aureus USA300_FPR3757 methionine sulfoxide reductase A YP_494014.1 1449257 R 451515 CDS YP_494015.1 87162066 3914245 complement(1449876..1450715) 1 NC_007793.1 identified by match to protein family HMM PF02645; match to protein family HMM TIGR00762; hypothetical protein 1450715 3914245 SAUSA300_1318 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494015.1 1449876 R 451515 CDS YP_494016.1 87161702 3914467 complement(1450730..1451209) 1 NC_007793.1 identified by match to protein family HMM PF00186; dihydrofolate reductase 1451209 folA 3914467 folA Staphylococcus aureus subsp. aureus USA300_FPR3757 dihydrofolate reductase YP_494016.1 1450730 R 451515 CDS YP_494017.1 87160328 3915403 complement(1451409..1452365) 1 NC_007793.1 ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived; thymidylate synthase 1452365 thyA 3915403 thyA Staphylococcus aureus subsp. aureus USA300_FPR3757 thymidylate synthase YP_494017.1 1451409 R 451515 CDS YP_494018.1 87160533 3914013 complement(1452789..1453226) 1 NC_007793.1 identified by match to protein family HMM PF06491; hypothetical protein 1453226 3914013 SAUSA300_1321 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494018.1 1452789 R 451515 CDS YP_494019.1 87161495 3913208 complement(1453242..1454366) 1 NC_007793.1 identified by match to protein family HMM PF03130; hypothetical protein 1454366 3913208 SAUSA300_1322 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494019.1 1453242 R 451515 CDS YP_494020.1 87162375 3913528 complement(1454404..1454655) 1 NC_007793.1 hypothetical protein 1454655 3913528 SAUSA300_1323 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494020.1 1454404 R 451515 CDS YP_494021.1 87160540 3914020 1455106..1455810 1 NC_007793.1 identified by match to protein family HMM PF02592; match to protein family HMM TIGR00697; hypothetical protein 1455810 3914020 SAUSA300_1324 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494021.1 1455106 D 451515 CDS YP_494022.1 87160895 3912972 complement(1455875..1456006) 1 NC_007793.1 hypothetical protein 1456006 3912972 SAUSA300_1325 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494022.1 1455875 R 451515 CDS YP_494023.1 87161806 3914642 1456351..1456752 1 NC_007793.1 putative cell wall enzyme EbsB 1456752 3914642 SAUSA300_1326 Staphylococcus aureus subsp. aureus USA300_FPR3757 putative cell wall enzyme EbsB YP_494023.1 1456351 D 451515 CDS YP_494024.1 87161956 3913713 complement(1456811..1488076) 1 NC_007793.1 identified by similarity to GB:AAW37659.1; match to protein family HMM PF01468; match to protein family HMM PF04650; match to protein family HMM PF07554; match to protein family HMM PF07564; match to protein family HMM TIGR01168; cell surface protein 1488076 3913713 SAUSA300_1327 Staphylococcus aureus subsp. aureus USA300_FPR3757 cell surface protein YP_494024.1 1456811 R 451515 CDS YP_494025.1 87161106 3914312 complement(1488474..1489865) 1 NC_007793.1 identified by match to protein family HMM PF07690; putative drug transporter 1489865 3914312 SAUSA300_1328 Staphylococcus aureus subsp. aureus USA300_FPR3757 putative drug transporter YP_494025.1 1488474 R 451515 CDS YP_494026.1 87160832 3913553 complement(1490022..1491344) 1 NC_007793.1 identified by match to protein family HMM PF00324; amino acid permease 1491344 3913553 SAUSA300_1329 Staphylococcus aureus subsp. aureus USA300_FPR3757 amino acid permease YP_494026.1 1490022 R 451515 CDS YP_494027.1 87160460 3913061 complement(1491375..1492415) 1 NC_007793.1 catalyzes the formation of 2-oxobutanoate from L-threonine; catabolic; threonine dehydratase 1492415 ilvA 3913061 ilvA Staphylococcus aureus subsp. aureus USA300_FPR3757 threonine dehydratase YP_494027.1 1491375 R 451515 CDS YP_494028.1 87160863 3914134 complement(1492510..1493628) 1 NC_007793.1 identified by match to protein family HMM PF01262; match to protein family HMM PF03949; match to protein family HMM PF05222; match to protein family HMM TIGR00518; alanine dehydrogenase 1493628 ald 3914134 ald Staphylococcus aureus subsp. aureus USA300_FPR3757 alanine dehydrogenase YP_494028.1 1492510 R 451515 CDS YP_494029.1 87161192 3914903 complement(1494103..1494981) 1 NC_007793.1 identified by match to protein family HMM PF01367; match to protein family HMM PF02739; putative 5'-3' exonuclease 1494981 3914903 SAUSA300_1332 Staphylococcus aureus subsp. aureus USA300_FPR3757 putative 5'-3' exonuclease YP_494029.1 1494103 R 451515 CDS YP_494030.1 87162357 3914206 complement(1495001..1498441) 1 NC_007793.1 identified by match to protein family HMM PF00350; match to protein family HMM PF01926; hypothetical protein 1498441 3914206 SAUSA300_1333 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494030.1 1495001 R 451515 CDS YP_494031.1 87160073 3913297 1498745..1500085 1 NC_007793.1 identified by match to protein family HMM PF03413; match to protein family HMM PF03929; hypothetical protein 1500085 3913297 SAUSA300_1334 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494031.1 1498745 D 451515 CDS YP_494032.1 87160560 3913515 complement(1500291..1500623) 1 NC_007793.1 hypothetical protein 1500623 3913515 SAUSA300_1335 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494032.1 1500291 R 451515 CDS YP_494033.1 87161212 3912787 complement(1500707..1501852) 1 NC_007793.1 identified by match to protein family HMM PF01170; hypothetical protein 1501852 3912787 SAUSA300_1336 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494033.1 1500707 R 451515 CDS YP_494034.1 87162117 3913581 complement(1502503..1502847) 1 NC_007793.1 identified by match to protein family HMM PF05103; hypothetical protein 1502847 3913581 SAUSA300_1337 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494034.1 1502503 R 451515 CDS YP_494035.1 87160116 3913380 complement(1502861..1503424) 1 NC_007793.1 identified by match to protein family HMM PF06908; hypothetical protein 1503424 3913380 SAUSA300_1338 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494035.1 1502861 R 451515 CDS YP_494036.1 87160977 3913309 complement(1503417..1503767) 1 NC_007793.1 hypothetical protein 1503767 3913309 SAUSA300_1339 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494036.1 1503417 R 451515 CDS YP_494037.1 87161372 3914771 1504307..1504933 1 NC_007793.1 functions in homologous recombination, DNA repair, and chromosome segregation; binds preferentially to three- and four-stranded DNA intermediates; introduces specific nick sites in four-stranded DNA substrates; functions similarly to Escherichia coli RuvC; Holliday junction-specific endonuclease 1504933 recU 3914771 recU Staphylococcus aureus subsp. aureus USA300_FPR3757 Holliday junction-specific endonuclease YP_494037.1 1504307 D 451515 CDS YP_494038.1 87162077 3914620 1504930..1507113 1 NC_007793.1 identified by match to protein family HMM PF00905; match to protein family HMM PF00912; penicillin binding protein 2 1507113 pbp2 3914620 pbp2 Staphylococcus aureus subsp. aureus USA300_FPR3757 penicillin binding protein 2 YP_494038.1 1504930 D 451515 CDS YP_494039.1 87160032 3913353 complement(1507679..1508020) 1 NC_007793.1 hypothetical protein 1508020 3913353 SAUSA300_1342 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494039.1 1507679 R 451515 CDS YP_494040.1 87160441 3912944 complement(1508025..1508684) 1 NC_007793.1 identified by match to protein family HMM PF00633; match to protein family HMM PF00730; match to protein family HMM TIGR01083; endonuclease III 1508684 nth 3912944 nth Staphylococcus aureus subsp. aureus USA300_FPR3757 endonuclease III YP_494040.1 1508025 R 451515 CDS YP_494041.1 87160690 3914184 complement(1508674..1509360) 1 NC_007793.1 identified by match to protein family HMM PF04271; match to protein family HMM TIGR01446; putative DNA replication protein DnaD 1509360 3914184 SAUSA300_1344 Staphylococcus aureus subsp. aureus USA300_FPR3757 putative DNA replication protein DnaD YP_494041.1 1508674 R 451515 CDS YP_494042.1 87161603 3914387 complement(1509688..1510980) 1 NC_007793.1 catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; asparaginyl-tRNA synthetase 1510980 asnC 3914387 asnC Staphylococcus aureus subsp. aureus USA300_FPR3757 asparaginyl-tRNA synthetase YP_494042.1 1509688 R 451515 CDS YP_494043.1 87161026 3913942 complement(1511302..1513995) 1 NC_007793.1 identified by match to protein family HMM PF00929; match to protein family HMM TIGR00573; match to protein family HMM TIGR01407; DnaQ family exonuclease/DinG family helicase 1513995 3913942 SAUSA300_1346 Staphylococcus aureus subsp. aureus USA300_FPR3757 DnaQ family exonuclease/DinG family helicase YP_494043.1 1511302 R 451515 CDS YP_494044.1 87161254 3913863 complement(1514019..1514990) 1 NC_007793.1 identified by match to protein family HMM PF03099; match to protein family HMM TIGR00121; BirA bifunctional protein 1514990 birA 3913863 birA Staphylococcus aureus subsp. aureus USA300_FPR3757 BirA bifunctional protein YP_494044.1 1514019 R 451515 CDS YP_494045.2 162138558 3912993 complement(1514977..1516179) 1 NC_007793.1 catalyzes the addition and repair of the 3'-terminal CCA sequence in tRNA; these proteins belong to the CCA-adding enzyme subfamily 2 which does not have phosphohydrolase activity; tRNA CCA-pyrophosphorylase 1516179 3912993 SAUSA300_1348 Staphylococcus aureus subsp. aureus USA300_FPR3757 tRNA CCA-pyrophosphorylase YP_494045.2 1514977 R 451515 CDS YP_494046.1 87161997 3914894 complement(1516184..1517326) 1 NC_007793.1 identified by match to protein family HMM PF00534; glycosyl transferase, group 1 family protein 1517326 3914894 SAUSA300_1349 Staphylococcus aureus subsp. aureus USA300_FPR3757 glycosyl transferase, group 1 family protein YP_494046.1 1516184 R 451515 CDS YP_494047.1 87160286 3913493 complement(1517567..1517884) 1 NC_007793.1 identified by match to protein family HMM PF03819; hypothetical protein 1517884 3913493 SAUSA300_1350 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494047.1 1517567 R 451515 CDS YP_494048.1 87161150 3914495 complement(1518221..1518901) 1 NC_007793.1 identified by match to protein family HMM PF04298; hypothetical protein 1518901 3914495 SAUSA300_1351 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494048.1 1518221 R 451515 CDS YP_494049.1 87161731 3913017 complement(1518973..1519560) 1 NC_007793.1 identified by match to protein family HMM PF07187; hypothetical protein 1519560 3913017 SAUSA300_1352 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494049.1 1518973 R 451515 CDS YP_494050.1 87161305 3914801 complement(1519550..1520125) 1 NC_007793.1 hypothetical protein 1520125 3914801 SAUSA300_1353 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494050.1 1519550 R 451515 CDS YP_494051.1 87161889 3914400 complement(1520139..1521242) 1 NC_007793.1 identified by match to protein family HMM PF07719; hypothetical protein 1521242 3914400 SAUSA300_1354 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494051.1 1520139 R 451515 CDS YP_494052.1 87159926 3914972 complement(1521390..1522688) 1 NC_007793.1 catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis; 3-phosphoshikimate 1-carboxyvinyltransferase 1522688 aroA 3914972 aroA Staphylococcus aureus subsp. aureus USA300_FPR3757 3-phosphoshikimate 1-carboxyvinyltransferase YP_494052.1 1521390 R 451515 CDS YP_494053.1 87162137 3914684 complement(1522698..1523762) 1 NC_007793.1 catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis; 3-dehydroquinate synthase 1523762 aroB 3914684 aroB Staphylococcus aureus subsp. aureus USA300_FPR3757 3-dehydroquinate synthase YP_494053.1 1522698 R 451515 CDS YP_494054.1 87159895 3914941 complement(1523788..1524954) 1 NC_007793.1 catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase 1524954 aroC 3914941 aroC Staphylococcus aureus subsp. aureus USA300_FPR3757 chorismate synthase YP_494054.1 1523788 R 451515 CDS YP_494055.1 87160941 3913781 complement(1525749..1526180) 1 NC_007793.1 catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate; nucleoside diphosphate kinase 1526180 ndk 3913781 ndk Staphylococcus aureus subsp. aureus USA300_FPR3757 nucleoside diphosphate kinase YP_494055.1 1525749 R 451515 CDS YP_494056.1 87160661 3913985 complement(1526290..1527234) 1 NC_007793.1 identified by match to protein family HMM PF00348; polyprenyl synthetase 1527234 3913985 SAUSA300_1359 Staphylococcus aureus subsp. aureus USA300_FPR3757 polyprenyl synthetase YP_494056.1 1526290 R 451515 CDS YP_494057.1 87161409 3914097 complement(1527251..1527853) 1 NC_007793.1 Catalyzes the carbon methylation reaction in the biosynthesis of ubiquinone; ubiquinone/menaquinone biosynthesis methyltransferase 1527853 ubiE 3914097 ubiE Staphylococcus aureus subsp. aureus USA300_FPR3757 ubiquinone/menaquinone biosynthesis methyltransferase YP_494057.1 1527251 R 451515 CDS YP_494058.1 87162124 3913588 complement(1527979..1528551) 1 NC_007793.1 hypothetical protein 1528551 3913588 SAUSA300_1361 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494058.1 1527979 R 451515 CDS YP_494059.1 87160505 3915096 complement(1528982..1529254) 1 NC_007793.1 identified by match to protein family HMM PF00216; DNA-binding protein HU 1529254 hup 3915096 hup Staphylococcus aureus subsp. aureus USA300_FPR3757 DNA-binding protein HU YP_494059.1 1528982 R 451515 CDS YP_494060.1 87159940 3914986 complement(1529425..1530423) 1 NC_007793.1 catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 1530423 gpsA 3914986 gpsA Staphylococcus aureus subsp. aureus USA300_FPR3757 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase YP_494060.1 1529425 R 451515 CDS YP_494061.1 87161650 3913152 complement(1530440..1531750) 1 NC_007793.1 EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA 1531750 engA 3913152 engA Staphylococcus aureus subsp. aureus USA300_FPR3757 GTP-binding protein EngA YP_494061.1 1530440 R 451515 CDS YP_494062.1 87162219 3913994 complement(1531972..1533147) 1 NC_007793.1 in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 1533147 rpsA 3913994 rpsA Staphylococcus aureus subsp. aureus USA300_FPR3757 30S ribosomal protein S1 YP_494062.1 1531972 R 451515 CDS YP_494063.1 87161075 3914261 complement(1533712..1533828) 1 NC_007793.1 hypothetical protein 1533828 3914261 SAUSA300_1366 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494063.1 1533712 R 451515 CDS YP_494064.2 229558721 3913498 complement(1533859..1534518) 1 NC_007793.1 Catalyzes the formation of (d)CDP from ATP and (d)CMP; cytidylate kinase 1534518 cmk 3913498 cmk Staphylococcus aureus subsp. aureus USA300_FPR3757 cytidylate kinase YP_494064.2 1533859 R 451515 CDS YP_494065.1 87161227 3914781 1534595..1535563 1 NC_007793.1 identified by match to protein family HMM PF00710; L-asparaginase 1535563 ansA 3914781 ansA Staphylococcus aureus subsp. aureus USA300_FPR3757 L-asparaginase YP_494065.1 1534595 D 451515 CDS YP_494066.1 87161967 3914479 complement(1535678..1536664) 1 NC_007793.1 identified by match to protein family HMM PF00070; match to protein family HMM PF07992; pyridine nucleotide-disulfide oxidoreductase 1536664 3914479 SAUSA300_1369 Staphylococcus aureus subsp. aureus USA300_FPR3757 pyridine nucleotide-disulfide oxidoreductase YP_494066.1 1535678 R 451515 CDS YP_494067.1 87160749 3913412 complement(1537066..1538526) 1 NC_007793.1 identified by match to protein family HMM PF01476; cell surface elastin binding protein 1538526 ebpS 3913412 ebpS Staphylococcus aureus subsp. aureus USA300_FPR3757 cell surface elastin binding protein YP_494067.1 1537066 R 451515 CDS YP_494068.1 87160190 3913258 complement(1538679..1540058) 1 NC_007793.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF04851; match to protein family HMM TIGR00614; ATP-dependent DNA helicase RecQ 1540058 recQ 3913258 recQ Staphylococcus aureus subsp. aureus USA300_FPR3757 ATP-dependent DNA helicase RecQ YP_494068.1 1538679 R 451515 CDS YP_494069.1 87160398 3912843 complement(1540048..1541001) 1 NC_007793.1 hypothetical protein 1541001 3912843 SAUSA300_1372 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494069.1 1540048 R 451515 CDS YP_494070.1 87162379 3913532 1541133..1541357 1 NC_007793.1 ferredoxin 1541357 3913532 SAUSA300_1373 Staphylococcus aureus subsp. aureus USA300_FPR3757 ferredoxin YP_494070.1 1541133 D 451515 CDS YP_494071.1 87161815 3914651 complement(1541463..1542008) 1 NC_007793.1 hypothetical protein 1542008 3914651 SAUSA300_1374 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494071.1 1541463 R 451515 CDS YP_494072.1 87160605 3915224 complement(1542287..1542406) 1 NC_007793.1 hypothetical protein 1542406 3915224 SAUSA300_1375 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494072.1 1542287 R 451515 CDS YP_494073.1 87162064 3914243 complement(1542605..1543519) 1 NC_007793.1 identified by match to protein family HMM PF07901; putative lipoprotein 1543519 3914243 SAUSA300_1376 Staphylococcus aureus subsp. aureus USA300_FPR3757 putative lipoprotein YP_494073.1 1542605 R 451515 CDS YP_494074.1 87160911 3915162 complement(1543534..1543740) 1 NC_007793.1 hypothetical protein 1543740 3915162 SAUSA300_1377 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494074.1 1543534 R 451515 CDS YP_494075.1 87160326 3915401 complement(1543733..1544611) 1 NC_007793.1 identified by match to protein family HMM PF07901; hypothetical protein 1544611 3915401 SAUSA300_1378 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494075.1 1543733 R 451515 CDS YP_494076.1 87162187 3913884 complement(1544728..1545645) 1 NC_007793.1 identified by match to protein family HMM PF07901; putative lipoprotein 1545645 3913884 SAUSA300_1379 Staphylococcus aureus subsp. aureus USA300_FPR3757 putative lipoprotein YP_494076.1 1544728 R 451515 CDS YP_494077.1 87159915 3914961 complement(1545736..1545921) 1 NC_007793.1 hypothetical protein 1545921 3914961 SAUSA300_1380 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494077.1 1545736 R 451515 CDS YP_494078.1 87160624 3913285 complement(1546170..1547147) 1 NC_007793.1 identified by match to protein family HMM PF07968; match to protein family HMM TIGR01002; Panton-Valentine leukocidin, LukF-PV 1547147 lukF-PV 3913285 lukF-PV Staphylococcus aureus subsp. aureus USA300_FPR3757 Panton-Valentine leukocidin, LukF-PV YP_494078.1 1546170 R 451515 CDS YP_494079.1 87161953 3913710 complement(1547149..1548087) 1 NC_007793.1 identified by match to protein family HMM PF07968; match to protein family HMM TIGR01002; Panton-Valentine leukocidin, LukS-PV 1548087 lukS-PV 3913710 lukS-PV Staphylococcus aureus subsp. aureus USA300_FPR3757 Panton-Valentine leukocidin, LukS-PV YP_494079.1 1547149 R 451515 CDS YP_494080.1 87160059 3912912 complement(1548477..1549931) 1 NC_007793.1 identical to Staphylococcus aureus temperate phage phiSLT; identified by match to protein family HMM PF01520; match to protein family HMM PF05257; phiSLT ORF484-like protein, lysin 1549931 3912912 SAUSA300_1383 Staphylococcus aureus subsp. aureus USA300_FPR3757 phiSLT ORF484-like protein, lysin YP_494080.1 1548477 R 451515 CDS YP_494081.1 87160845 3913391 complement(1549942..1550244) 1 NC_007793.1 identical to holin in Staphylococcus aureus temperate phage phiSLT; identified by match to protein family HMM PF04688; match to protein family HMM TIGR01592; phiSLT ORF100b-like protein, holin 1550244 3913391 SAUSA300_1384 Staphylococcus aureus subsp. aureus USA300_FPR3757 phiSLT ORF100b-like protein, holin YP_494081.1 1549942 R 451515 CDS YP_494082.1 87160924 3914362 complement(1550380..1550679) 1 NC_007793.1 phiSLT ORF 99-like protein 1550679 3914362 SAUSA300_1385 Staphylococcus aureus subsp. aureus USA300_FPR3757 phiSLT ORF 99-like protein YP_494082.1 1550380 R 451515 CDS YP_494083.1 87160841 3913387 complement(1550725..1550889) 1 NC_007793.1 identified by match to protein family HMM TIGR01669; phiETA ORF59-like protein 1550889 3913387 SAUSA300_1386 Staphylococcus aureus subsp. aureus USA300_FPR3757 phiETA ORF59-like protein YP_494083.1 1550725 R 451515 CDS YP_494084.1 87160097 3914930 complement(1550882..1551271) 1 NC_007793.1 phiSLT ORF129-like protein 1551271 3914930 SAUSA300_1387 Staphylococcus aureus subsp. aureus USA300_FPR3757 phiSLT ORF129-like protein YP_494084.1 1550882 R 451515 CDS YP_494085.1 87161516 3913190 complement(1551271..1552737) 1 NC_007793.1 phiSLT ORF488-like protein 1552737 3913190 SAUSA300_1388 Staphylococcus aureus subsp. aureus USA300_FPR3757 phiSLT ORF488-like protein YP_494085.1 1551271 R 451515 CDS YP_494086.1 87160544 3914024 complement(1552737..1554647) 1 NC_007793.1 phiSLT ORF636-like protein 1554647 3914024 SAUSA300_1389 Staphylococcus aureus subsp. aureus USA300_FPR3757 phiSLT ORF636-like protein YP_494086.1 1552737 R 451515 CDS YP_494087.1 87161704 3914469 complement(1554663..1554953) 1 NC_007793.1 phiSLT ORF96-like protein 1554953 3914469 SAUSA300_1390 Staphylococcus aureus subsp. aureus USA300_FPR3757 phiSLT ORF96-like protein YP_494087.1 1554663 R 451515 CDS YP_494088.1 87162427 3915023 complement(1554953..1556536) 1 NC_007793.1 identified by match to protein family HMM PF06605; phiSLT ORF527-like protein 1556536 3915023 SAUSA300_1391 Staphylococcus aureus subsp. aureus USA300_FPR3757 phiSLT ORF527-like protein YP_494088.1 1554953 R 451515 CDS YP_494089.1 87160282 3913489 complement(1556545..1557369) 1 NC_007793.1 identified by match to protein family HMM PF06997; phiSLT ORF191-like protein 1557369 3913489 SAUSA300_1392 Staphylococcus aureus subsp. aureus USA300_FPR3757 phiSLT ORF191-like protein YP_494089.1 1556545 R 451515 CDS YP_494090.1 87162017 3915388 complement(1557369..1563569) 1 NC_007793.1 identified by match to protein family HMM PF01464; match to protein family HMM PF01551; match to protein family HMM TIGR01760; phiSLT ORF2067-like protein, phage tail tape measure protein 1563569 3915388 SAUSA300_1393 Staphylococcus aureus subsp. aureus USA300_FPR3757 phiSLT ORF2067-like protein, phage tail tape measure protein YP_494090.1 1557369 R 451515 CDS YP_494091.1 87162239 3914864 complement(1563583..1563741) 1 NC_007793.1 hypothetical protein 1563741 3914864 SAUSA300_1394 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494091.1 1563583 R 451515 CDS YP_494092.1 87160227 3913765 complement(1563783..1564133) 1 NC_007793.1 phiSLT ORF116b-like protein 1564133 3913765 SAUSA300_1395 Staphylococcus aureus subsp. aureus USA300_FPR3757 phiSLT ORF116b-like protein YP_494092.1 1563783 R 451515 CDS YP_494093.1 87161085 3914271 complement(1564191..1564646) 1 NC_007793.1 identified by match to protein family HMM PF02368; phiSLT ORF151-like protein, major tail protein 1564646 3914271 SAUSA300_1396 Staphylococcus aureus subsp. aureus USA300_FPR3757 phiSLT ORF151-like protein, major tail protein YP_494093.1 1564191 R 451515 CDS YP_494094.1 87161294 3914713 complement(1564738..1565379) 1 NC_007793.1 identified by match to protein family HMM PF04630; match to protein family HMM TIGR01603; phiSLT ORF213-like protein, major tail protein 1565379 3914713 SAUSA300_1397 Staphylococcus aureus subsp. aureus USA300_FPR3757 phiSLT ORF213-like protein, major tail protein YP_494094.1 1564738 R 451515 CDS YP_494095.1 87161848 3913954 complement(1565810..1566211) 1 NC_007793.1 phiSLT ORF123-like protein 1566211 3913954 SAUSA300_1398 Staphylococcus aureus subsp. aureus USA300_FPR3757 phiSLT ORF123-like protein YP_494095.1 1565810 R 451515 CDS YP_494096.1 87161841 3913812 complement(1566208..1566540) 1 NC_007793.1 phiSLT ORF110-like protein 1566540 3913812 SAUSA300_1399 Staphylococcus aureus subsp. aureus USA300_FPR3757 phiSLT ORF110-like protein YP_494096.1 1566208 R 451515 CDS YP_494097.1 87162410 3915257 complement(1566552..1566830) 1 NC_007793.1 identified by match to protein family HMM TIGR01560; phiSLT ORF92-like protein 1566830 3915257 SAUSA300_1400 Staphylococcus aureus subsp. aureus USA300_FPR3757 phiSLT ORF92-like protein YP_494097.1 1566552 R 451515 CDS YP_494098.1 87161729 3913015 complement(1566899..1568062) 1 NC_007793.1 identified by match to protein family HMM PF05065; phiSLT ORF387-like protein 1568062 3913015 SAUSA300_1401 Staphylococcus aureus subsp. aureus USA300_FPR3757 phiSLT ORF387-like protein YP_494098.1 1566899 R 451515 CDS YP_494099.1 87161020 3913936 complement(1568074..1568847) 1 NC_007793.1 identified by match to protein family HMM PF00574; phiSLT ORF257-like protein prophage protease 1568847 3913936 SAUSA300_1402 Staphylococcus aureus subsp. aureus USA300_FPR3757 phiSLT ORF257-like protein prophage protease YP_494099.1 1568074 R 451515 CDS YP_494100.1 87160088 3914921 complement(1568831..1570069) 1 NC_007793.1 identified by match to protein family HMM PF04860; match to protein family HMM TIGR01537; phiSLT ORF412-like protein, portal protein 1570069 3914921 SAUSA300_1403 Staphylococcus aureus subsp. aureus USA300_FPR3757 phiSLT ORF412-like protein, portal protein YP_494100.1 1568831 R 451515 CDS YP_494101.1 87162180 3913877 complement(1570074..1571765) 1 NC_007793.1 identified by match to protein family HMM PF03354; phiSLT ORF 563-like protein, terminase, large subunit 1571765 3913877 SAUSA300_1404 Staphylococcus aureus subsp. aureus USA300_FPR3757 phiSLT ORF 563-like protein, terminase, large subunit YP_494101.1 1570074 R 451515 CDS YP_494102.1 87161237 3914791 complement(1571755..1572060) 1 NC_007793.1 identified by match to protein family HMM PF05119; phiSLT ORF 101-like protein, terminase, small subunit 1572060 3914791 SAUSA300_1405 Staphylococcus aureus subsp. aureus USA300_FPR3757 phiSLT ORF 101-like protein, terminase, small subunit YP_494102.1 1571755 R 451515 CDS YP_494103.1 87160607 3913268 complement(1572187..1572501) 1 NC_007793.1 identified by match to protein family HMM PF01844; phiSLT ORF 104b-like protein 1572501 3913268 SAUSA300_1406 Staphylococcus aureus subsp. aureus USA300_FPR3757 phiSLT ORF 104b-like protein YP_494103.1 1572187 R 451515 CDS YP_494104.1 87161062 3912772 complement(1572658..1573095) 1 NC_007793.1 identified by match to protein family HMM TIGR01636; phi SLT ORF 145-like protein, phage transcriptional regulator 1573095 3912772 SAUSA300_1407 Staphylococcus aureus subsp. aureus USA300_FPR3757 phi SLT ORF 145-like protein, phage transcriptional regulator YP_494104.1 1572658 R 451515 CDS YP_494105.1 87160506 3915097 complement(1573108..1574379) 1 NC_007793.1 identified by match to protein family HMM PF00176; phage helicase 1574379 3915097 SAUSA300_1408 Staphylococcus aureus subsp. aureus USA300_FPR3757 phage helicase YP_494105.1 1573108 R 451515 CDS YP_494106.1 87161853 3913959 complement(1574456..1574746) 1 NC_007793.1 hypothetical protein 1574746 3913959 SAUSA300_1409 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494106.1 1574456 R 451515 CDS YP_494107.1 87161308 3914804 complement(1575087..1577534) 1 NC_007793.1 identified by match to protein family HMM PF05272; virulence-associated protein E 1577534 3914804 SAUSA300_1410 Staphylococcus aureus subsp. aureus USA300_FPR3757 virulence-associated protein E YP_494107.1 1575087 R 451515 CDS YP_494108.1 87160633 3915068 complement(1577822..1578022) 1 NC_007793.1 identified by match to protein family HMM PF07438; phiSLT ORF66-like protein 1578022 3915068 SAUSA300_1411 Staphylococcus aureus subsp. aureus USA300_FPR3757 phiSLT ORF66-like protein YP_494108.1 1577822 R 451515 CDS YP_494109.1 87159913 3914959 complement(1578090..1578242) 1 NC_007793.1 similar to transcriptional activator rinB; identified by match to protein family HMM PF06116; phiSLT ORF 50-like protein 1578242 3914959 SAUSA300_1412 Staphylococcus aureus subsp. aureus USA300_FPR3757 phiSLT ORF 50-like protein YP_494109.1 1578090 R 451515 CDS YP_494110.1 87160663 3913987 complement(1578239..1578625) 1 NC_007793.1 hypothetical protein 1578625 3913987 SAUSA300_1413 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494110.1 1578239 R 451515 CDS YP_494111.1 87159945 3914992 complement(1578618..1578854) 1 NC_007793.1 phiSLT ORF 78B-like protein 1578854 3914992 SAUSA300_1414 Staphylococcus aureus subsp. aureus USA300_FPR3757 phiSLT ORF 78B-like protein YP_494111.1 1578618 R 451515 CDS YP_494112.1 87162389 3913911 complement(1578847..1579050) 1 NC_007793.1 phiSLT ORF 77-like protein 1579050 3913911 SAUSA300_1415 Staphylococcus aureus subsp. aureus USA300_FPR3757 phiSLT ORF 77-like protein YP_494112.1 1578847 R 451515 CDS YP_494113.1 87161667 3913169 complement(1579047..1579253) 1 NC_007793.1 identified by match to protein family HMM PF07129; phiSLT ORF 81b-like protein 1579253 3913169 SAUSA300_1416 Staphylococcus aureus subsp. aureus USA300_FPR3757 phiSLT ORF 81b-like protein YP_494113.1 1579047 R 451515 CDS YP_494114.1 87160992 3913324 complement(1579290..1579826) 1 NC_007793.1 phiSLT ORF 175-like protein 1579826 3913324 SAUSA300_1417 Staphylococcus aureus subsp. aureus USA300_FPR3757 phiSLT ORF 175-like protein YP_494114.1 1579290 R 451515 CDS YP_494115.1 87160225 3913763 complement(1579819..1580067) 1 NC_007793.1 identified by match to protein family HMM PF06260; phiSLT ORF 82-like protein 1580067 3913763 SAUSA300_1418 Staphylococcus aureus subsp. aureus USA300_FPR3757 phiSLT ORF 82-like protein YP_494115.1 1579819 R 451515 CDS YP_494116.1 87160252 3915143 complement(1580082..1580324) 1 NC_007793.1 identified by match to protein family HMM PF06194; phiSLT ORF80-like protein 1580324 3915143 SAUSA300_1419 Staphylococcus aureus subsp. aureus USA300_FPR3757 phiSLT ORF80-like protein YP_494116.1 1580082 R 451515 CDS YP_494117.1 87160869 3914141 complement(1580542..1580799) 1 NC_007793.1 hypothetical protein 1580799 3914141 SAUSA300_1420 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494117.1 1580542 R 451515 CDS YP_494118.1 87160354 3913228 complement(1580799..1581200) 1 NC_007793.1 identified by match to protein family HMM PF07768; phiSLT ORF122-like protein, DNA polymerase 1581200 3913228 SAUSA300_1421 Staphylococcus aureus subsp. aureus USA300_FPR3757 phiSLT ORF122-like protein, DNA polymerase YP_494118.1 1580799 R 451515 CDS YP_494119.1 87160926 3914364 complement(1581200..1581385) 1 NC_007793.1 phiSLT ORF65-like protein 1581385 3914364 SAUSA300_1422 Staphylococcus aureus subsp. aureus USA300_FPR3757 phiSLT ORF65-like protein YP_494119.1 1581200 R 451515 CDS YP_494120.1 87161801 3914044 complement(1581398..1583350) 1 NC_007793.1 identified by match to protein family HMM PF00476; phage related DNA polymerase family A 1583350 polA 3914044 polA Staphylococcus aureus subsp. aureus USA300_FPR3757 phage related DNA polymerase family A YP_494120.1 1581398 R 451515 CDS YP_494121.1 87162369 3913522 complement(1583418..1583975) 1 NC_007793.1 hypothetical protein 1583975 3913522 SAUSA300_1424 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494121.1 1583418 R 451515 CDS YP_494122.1 87160012 3912923 complement(1584001..1585167) 1 NC_007793.1 hypothetical protein 1585167 3912923 SAUSA300_1425 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494122.1 1584001 R 451515 CDS YP_494123.1 87160583 3915009 complement(1585164..1585526) 1 NC_007793.1 hypothetical protein 1585526 3915009 SAUSA300_1426 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494123.1 1585164 R 451515 CDS YP_494124.1 87161465 3914056 complement(1585540..1585800) 1 NC_007793.1 identified by match to protein family HMM PF06531; phiSLT ORF86-like protein 1585800 3914056 SAUSA300_1427 Staphylococcus aureus subsp. aureus USA300_FPR3757 phiSLT ORF86-like protein YP_494124.1 1585540 R 451515 CDS YP_494125.1 87160339 3915114 complement(1586100..1586417) 1 NC_007793.1 hypothetical protein 1586417 3915114 SAUSA300_1428 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494125.1 1586100 R 451515 CDS YP_494126.1 87161942 3913699 complement(1586510..1586605) 1 NC_007793.1 phiSLT ORF53-like protein 1586605 3913699 SAUSA300_1429 Staphylococcus aureus subsp. aureus USA300_FPR3757 phiSLT ORF53-like protein YP_494126.1 1586510 R 451515 CDS YP_494127.1 87161244 3913853 complement(1586683..1586946) 1 NC_007793.1 phiSLT ORF 87-like protein DNA-binding protein 1586946 3913853 SAUSA300_1430 Staphylococcus aureus subsp. aureus USA300_FPR3757 phiSLT ORF 87-like protein DNA-binding protein YP_494127.1 1586683 R 451515 CDS YP_494128.1 87160702 3914196 complement(1586971..1587186) 1 NC_007793.1 phiSLT ORF71-like protein 1587186 3914196 SAUSA300_1431 Staphylococcus aureus subsp. aureus USA300_FPR3757 phiSLT ORF71-like protein YP_494128.1 1586971 R 451515 CDS YP_494129.1 87160304 3914540 1587233..1587472 1 NC_007793.1 phiSLT ORF78-like protein 1587472 3914540 SAUSA300_1432 Staphylococcus aureus subsp. aureus USA300_FPR3757 phiSLT ORF78-like protein YP_494129.1 1587233 D 451515 CDS YP_494130.1 87161719 3915285 complement(1587729..1587929) 1 NC_007793.1 identified by match to protein family HMM PF01381; putative phage regulatory protein 1587929 3915285 SAUSA300_1433 Staphylococcus aureus subsp. aureus USA300_FPR3757 putative phage regulatory protein YP_494130.1 1587729 R 451515 CDS YP_494131.1 87161138 3913727 1588081..1588410 1 NC_007793.1 identified by match to protein family HMM PF01381; phiSLT ORF104a-like protein, repressor 1588410 3913727 SAUSA300_1434 Staphylococcus aureus subsp. aureus USA300_FPR3757 phiSLT ORF104a-like protein, repressor YP_494131.1 1588081 D 451515 CDS YP_494132.1 87161835 3913806 1588423..1588884 1 NC_007793.1 identified by match to protein family HMM PF06114; phiSLT ORF153-like protein 1588884 3913806 SAUSA300_1435 Staphylococcus aureus subsp. aureus USA300_FPR3757 phiSLT ORF153-like protein YP_494132.1 1588423 D 451515 CDS YP_494133.1 87161260 3913869 1588902..1589336 1 NC_007793.1 phiSLT ORF144-like protein lipoprotein 1589336 3913869 SAUSA300_1436 Staphylococcus aureus subsp. aureus USA300_FPR3757 phiSLT ORF144-like protein lipoprotein YP_494133.1 1588902 D 451515 CDS YP_494134.1 87160755 3913418 complement(1589993..1590607) 1 NC_007793.1 phiSLT ORF204-like protein 1590607 3913418 SAUSA300_1437 Staphylococcus aureus subsp. aureus USA300_FPR3757 phiSLT ORF204-like protein YP_494134.1 1589993 R 451515 CDS YP_494135.1 87160197 3913265 1590733..1591938 1 NC_007793.1 identified by match to protein family HMM PF00589; phiSLT ORF401-like protein, integrase 1591938 3913265 SAUSA300_1438 Staphylococcus aureus subsp. aureus USA300_FPR3757 phiSLT ORF401-like protein, integrase YP_494135.1 1590733 D 451515 CDS YP_494136.1 87160300 3914536 complement(1594000..1594869) 1 NC_007793.1 identified by match to protein family HMM PF07901; hypothetical protein 1594869 3914536 SAUSA300_1440 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494136.1 1594000 R 451515 CDS YP_494137.1 87162310 3913444 complement(1595174..1596940) 1 NC_007793.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; respiratory response protein, SrrB 1596940 srrB 3913444 srrB Staphylococcus aureus subsp. aureus USA300_FPR3757 respiratory response protein, SrrB YP_494137.1 1595174 R 451515 CDS YP_494138.1 87161890 3914401 complement(1596906..1597631) 1 NC_007793.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486; respiratory response protein, SrrA 1597631 srrA 3914401 srrA Staphylococcus aureus subsp. aureus USA300_FPR3757 respiratory response protein, SrrA YP_494138.1 1596906 R 451515 CDS YP_494139.1 87160582 3915008 complement(1597764..1598501) 1 NC_007793.1 identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093; ribosomal large subunit pseudouridine synthase B 1598501 rluB 3915008 rluB Staphylococcus aureus subsp. aureus USA300_FPR3757 ribosomal large subunit pseudouridine synthase B YP_494139.1 1597764 R 451515 CDS YP_494140.1 87160083 3914916 complement(1598494..1599036) 1 NC_007793.1 identified by match to protein family HMM PF04079; match to protein family HMM TIGR00281; segregation and condensation protein B 1599036 scpB 3914916 scpB Staphylococcus aureus subsp. aureus USA300_FPR3757 segregation and condensation protein B YP_494140.1 1598494 R 451515 CDS YP_494141.1 87162142 3914689 complement(1599029..1599760) 1 NC_007793.1 identified by match to protein family HMM PF02616; hypothetical protein 1599760 scpA 3914689 scpA Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494141.1 1599029 R 451515 CDS YP_494142.1 87161571 3913640 1599852..1600358 1 NC_007793.1 identified by match to protein family HMM PF03745; hypothetical protein 1600358 3913640 SAUSA300_1446 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494142.1 1599852 D 451515 CDS YP_494143.1 87160007 3912918 complement(1600436..1601323) 1 NC_007793.1 identified by match to protein family HMM PF00589; match to protein family HMM PF02899; match to protein family HMM TIGR02225; tyrosine recombinase XerD 1601323 xerD 3912918 xerD Staphylococcus aureus subsp. aureus USA300_FPR3757 tyrosine recombinase XerD YP_494143.1 1600436 R 451515 CDS YP_494144.1 87160545 3914025 complement(1601372..1601821) 1 NC_007793.1 identified by match to protein family HMM PF01475; FUR family transcriptional regulator 1601821 3914025 SAUSA300_1448 Staphylococcus aureus subsp. aureus USA300_FPR3757 FUR family transcriptional regulator YP_494144.1 1601372 R 451515 CDS YP_494145.1 87161796 3914039 complement(1601926..1602468) 1 NC_007793.1 identified by match to protein family HMM PF00293; MutT/nudix family protein 1602468 3914039 SAUSA300_1449 Staphylococcus aureus subsp. aureus USA300_FPR3757 MutT/nudix family protein YP_494145.1 1601926 R 451515 CDS YP_494146.1 87162326 3913460 1602550..1603458 1 NC_007793.1 identified by match to protein family HMM PF00248; aldo/keto reductase family oxidoreductase 1603458 3913460 SAUSA300_1450 Staphylococcus aureus subsp. aureus USA300_FPR3757 aldo/keto reductase family oxidoreductase YP_494146.1 1602550 D 451515 CDS YP_494147.1 87161380 3914150 complement(1603938..1604693) 1 NC_007793.1 identified by match to protein family HMM PF00106; short chain dehydrogenase/reductase family oxidoreductase 1604693 3914150 SAUSA300_1451 Staphylococcus aureus subsp. aureus USA300_FPR3757 short chain dehydrogenase/reductase family oxidoreductase YP_494147.1 1603938 R 451515 CDS YP_494148.1 87160301 3914537 1604865..1605650 1 NC_007793.1 identified by match to protein family HMM PF03807; match to protein family HMM TIGR00112; pyrroline-5-carboxylate reductase 1605650 proC 3914537 proC Staphylococcus aureus subsp. aureus USA300_FPR3757 pyrroline-5-carboxylate reductase YP_494148.1 1604865 D 451515 CDS YP_494149.1 87159998 3914426 complement(1605755..1606675) 1 NC_007793.1 identified by match to protein family HMM TIGR02651; ribonuclease Z 1606675 3914426 SAUSA300_1453 Staphylococcus aureus subsp. aureus USA300_FPR3757 ribonuclease Z YP_494149.1 1605755 R 451515 CDS YP_494150.1 87160525 3914737 1606988..1608472 1 NC_007793.1 catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate; glucose-6-phosphate 1-dehydrogenase 1608472 zwf 3914737 zwf Staphylococcus aureus subsp. aureus USA300_FPR3757 glucose-6-phosphate 1-dehydrogenase YP_494150.1 1606988 D 451515 CDS YP_494151.1 87162397 3913920 1608675..1609568 1 NC_007793.1 identified by match to protein family HMM PF00165; match to protein family HMM PF06445; AraC family transcriptional regulator 1609568 3913920 SAUSA300_1455 Staphylococcus aureus subsp. aureus USA300_FPR3757 AraC family transcriptional regulator YP_494151.1 1608675 D 451515 CDS YP_494152.1 87160385 3912811 complement(1609651..1611300) 1 NC_007793.1 identified by match to protein family HMM PF00128; alpha-D-1,4-glucosidase 1611300 3912811 SAUSA300_1456 Staphylococcus aureus subsp. aureus USA300_FPR3757 alpha-D-1,4-glucosidase YP_494152.1 1609651 R 451515 CDS YP_494153.1 87160561 3913516 complement(1611316..1612335) 1 NC_007793.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532; maltose operon transcriptional repressor 1612335 malR 3913516 malR Staphylococcus aureus subsp. aureus USA300_FPR3757 maltose operon transcriptional repressor YP_494153.1 1611316 R 451515 CDS YP_494154.1 87160018 3912929 complement(1612529..1612900) 1 NC_007793.1 identified by match to protein family HMM PF00903; glyoxalase family protein 1612900 3912929 SAUSA300_1458 Staphylococcus aureus subsp. aureus USA300_FPR3757 glyoxalase family protein YP_494154.1 1612529 R 451515 CDS YP_494155.1 87161061 3912771 complement(1613119..1614525) 1 NC_007793.1 catalyzes the formation of D-ribulose 5-phosphate from 6-phospho-D-gluconate; 6-phosphogluconate dehydrogenase 1614525 gnd 3912771 gnd Staphylococcus aureus subsp. aureus USA300_FPR3757 6-phosphogluconate dehydrogenase YP_494155.1 1613119 R 451515 CDS YP_494156.1 87159907 3914953 complement(1614593..1615726) 1 NC_007793.1 identified by match to protein family HMM PF01546; match to protein family HMM PF05343; match to protein family HMM PF07687; match to protein family HMM TIGR01883; M20/M25/M40 family peptidase 1615726 3914953 SAUSA300_1460 Staphylococcus aureus subsp. aureus USA300_FPR3757 M20/M25/M40 family peptidase YP_494156.1 1614593 R 451515 CDS YP_494157.1 87162214 3913989 1615989..1616168 1 NC_007793.1 hypothetical protein 1616168 3913989 SAUSA300_1461 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494157.1 1615989 D 451515 CDS YP_494158.1 87161723 3915289 complement(1616295..1617275) 1 NC_007793.1 identified by match to protein family HMM PF06081; hypothetical protein 1617275 3915289 SAUSA300_1462 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494158.1 1616295 R 451515 CDS YP_494159.1 87160957 3915352 complement(1617289..1617726) 1 NC_007793.1 identified by match to protein family HMM PF06491; hypothetical protein 1617726 3915352 SAUSA300_1463 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494159.1 1617289 R 451515 CDS YP_494160.1 87160233 3913771 complement(1618077..1619351) 1 NC_007793.1 identified by match to protein family HMM PF00198; match to protein family HMM PF00364; match to protein family HMM PF02817; 2-oxoisovalerate dehydrogenase, E2 component, dihydrolipoamide acetyltransferase 1619351 3913771 SAUSA300_1464 Staphylococcus aureus subsp. aureus USA300_FPR3757 2-oxoisovalerate dehydrogenase, E2 component, dihydrolipoamide acetyltransferase YP_494160.1 1618077 R 451515 CDS YP_494161.1 87160136 3912989 complement(1619364..1620347) 1 NC_007793.1 identified by match to protein family HMM PF02779; match to protein family HMM PF02780; 2-oxoisovalerate dehydrogenase, E1 component, beta subunit 1620347 3912989 SAUSA300_1465 Staphylococcus aureus subsp. aureus USA300_FPR3757 2-oxoisovalerate dehydrogenase, E1 component, beta subunit YP_494161.1 1619364 R 451515 CDS YP_494162.1 87162134 3913598 complement(1620347..1621339) 1 NC_007793.1 identified by match to protein family HMM PF00676; 2-oxoisovalerate dehydrogenase, E1 component, alpha subunit 1621339 3913598 SAUSA300_1466 Staphylococcus aureus subsp. aureus USA300_FPR3757 2-oxoisovalerate dehydrogenase, E1 component, alpha subunit YP_494162.1 1620347 R 451515 CDS YP_494163.1 87162393 3913916 complement(1621355..1622776) 1 NC_007793.1 identified by match to protein family HMM PF00070; match to protein family HMM PF01134; match to protein family HMM PF02852; match to protein family HMM PF07992; match to protein family HMM TIGR01350; dihydrolipoamide dehydrogenase 1622776 lpdA 3913916 lpdA Staphylococcus aureus subsp. aureus USA300_FPR3757 dihydrolipoamide dehydrogenase YP_494163.1 1621355 R 451515 CDS YP_494164.1 87160403 3912848 complement(1622927..1624606) 1 NC_007793.1 identified by match to protein family HMM PF02463; match to protein family HMM TIGR00634; DNA repair protein RecN 1624606 recN 3912848 recN Staphylococcus aureus subsp. aureus USA300_FPR3757 DNA repair protein RecN YP_494164.1 1622927 R 451515 CDS YP_494165.1 87160026 3913347 complement(1624622..1625074) 1 NC_007793.1 regulates arginine biosynthesis when complexed with arginine by binding at site that overlap the promotors of the arginine biosynthesis genes; arginine repressor 1625074 argR 3913347 argR Staphylococcus aureus subsp. aureus USA300_FPR3757 arginine repressor YP_494165.1 1624622 R 451515 CDS YP_494166.1 87160564 3913519 complement(1625506..1626387) 1 NC_007793.1 identified by match to protein family HMM PF00348; geranyltranstransferase 1626387 3913519 SAUSA300_1470 Staphylococcus aureus subsp. aureus USA300_FPR3757 geranyltranstransferase YP_494166.1 1625506 R 451515 CDS YP_494167.1 87159965 3913852 complement(1626365..1626595) 1 NC_007793.1 catalyzes the bidirectional exonucleolytic cleavage of DNA; exodeoxyribonuclease VII small subunit 1626595 xseB 3913852 xseB Staphylococcus aureus subsp. aureus USA300_FPR3757 exodeoxyribonuclease VII small subunit YP_494167.1 1626365 R 451515 CDS YP_494168.1 87160641 3915076 complement(1626588..1627925) 1 NC_007793.1 bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides; exodeoxyribonuclease VII large subunit 1627925 xseA 3915076 xseA Staphylococcus aureus subsp. aureus USA300_FPR3757 exodeoxyribonuclease VII large subunit YP_494168.1 1626588 R 451515 CDS YP_494169.1 87161392 3914162 complement(1627942..1628331) 1 NC_007793.1 Regulates rRNA biosynthesis by transcriptional antitermination; transcription antitermination protein NusB 1628331 nusB 3914162 nusB Staphylococcus aureus subsp. aureus USA300_FPR3757 transcription antitermination protein NusB YP_494169.1 1627942 R 451515 CDS YP_494170.1 87162107 3913101 complement(1628391..1628753) 1 NC_007793.1 identified by match to protein family HMM PF03780; hypothetical protein 1628753 3913101 SAUSA300_1474 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494170.1 1628391 R 451515 CDS YP_494171.1 87160215 3913088 complement(1628768..1630123) 1 NC_007793.1 an AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase, an enzyme that catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism; acetyl-CoA carboxylase biotin carboxylase subunit 1630123 accC 3913088 accC Staphylococcus aureus subsp. aureus USA300_FPR3757 acetyl-CoA carboxylase biotin carboxylase subunit YP_494171.1 1628768 R 451515 CDS YP_494172.1 87161082 3914268 complement(1630123..1630587) 1 NC_007793.1 identified by match to protein family HMM PF00364; match to protein family HMM TIGR00531; acetyl-CoA carboxylase, biotin carboxyl carrier protein 1630587 accB 3914268 accB Staphylococcus aureus subsp. aureus USA300_FPR3757 acetyl-CoA carboxylase, biotin carboxyl carrier protein YP_494172.1 1630123 R 451515 CDS YP_494173.1 87161616 3913471 complement(1632071..1632427) 1 NC_007793.1 putative lipoprotein 1632427 3913471 SAUSA300_1478 Staphylococcus aureus subsp. aureus USA300_FPR3757 putative lipoprotein YP_494173.1 1632071 R 451515 CDS YP_494174.1 87162398 3913921 complement(1632483..1633073) 1 NC_007793.1 hypothetical protein 1633073 3913921 SAUSA300_1479 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494174.1 1632483 R 451515 CDS YP_494175.1 87160368 3913242 complement(1633080..1634126) 1 NC_007793.1 identified by match to protein family HMM PF05257; putative traG membrane protein 1634126 3913242 SAUSA300_1480 Staphylococcus aureus subsp. aureus USA300_FPR3757 putative traG membrane protein YP_494175.1 1633080 R 451515 CDS YP_494176.1 87160603 3915222 complement(1634116..1635963) 1 NC_007793.1 hypothetical protein 1635963 3915222 SAUSA300_1481 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494176.1 1634116 R 451515 CDS YP_494177.1 87161179 3914753 complement(1635968..1637326) 1 NC_007793.1 identified by match to protein family HMM PF01580; FtsK/SpoIIIE family protein 1637326 3914753 SAUSA300_1482 Staphylococcus aureus subsp. aureus USA300_FPR3757 FtsK/SpoIIIE family protein YP_494177.1 1635968 R 451515 CDS YP_494178.1 87162078 3914621 complement(1637380..1639875) 1 NC_007793.1 hypothetical protein 1639875 3914621 SAUSA300_1483 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494178.1 1637380 R 451515 CDS YP_494179.1 87160106 3913369 complement(1639910..1640293) 1 NC_007793.1 hypothetical protein 1640293 3913369 SAUSA300_1484 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494179.1 1639910 R 451515 CDS YP_494180.1 87161643 3913693 complement(1640305..1640565) 1 NC_007793.1 hypothetical protein 1640565 3913693 SAUSA300_1485 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494180.1 1640305 R 451515 CDS YP_494181.1 87161147 3914492 complement(1640570..1641625) 1 NC_007793.1 hypothetical protein 1641625 3914492 SAUSA300_1486 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494181.1 1640570 R 451515 CDS YP_494182.1 87161598 3914382 complement(1641686..1642777) 1 NC_007793.1 identified by match to protein family HMM PF02486; replication initiation factor family protein 1642777 3914382 SAUSA300_1487 Staphylococcus aureus subsp. aureus USA300_FPR3757 replication initiation factor family protein YP_494182.1 1641686 R 451515 CDS YP_494183.1 87162158 3915189 complement(1642952..1643254) 1 NC_007793.1 hypothetical protein 1643254 3915189 SAUSA300_1488 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494183.1 1642952 R 451515 CDS YP_494184.1 87161592 3914376 complement(1643268..1643588) 1 NC_007793.1 hypothetical protein 1643588 3914376 SAUSA300_1489 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494184.1 1643268 R 451515 CDS YP_494185.1 87162222 3913997 complement(1644418..1644975) 1 NC_007793.1 Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P 1644975 efp 3913997 efp Staphylococcus aureus subsp. aureus USA300_FPR3757 elongation factor P YP_494185.1 1644418 R 451515 CDS YP_494186.1 87160808 3913040 complement(1645001..1646062) 1 NC_007793.1 identified by match to protein family HMM PF00557; proline dipeptidase 1646062 3913040 SAUSA300_1491 Staphylococcus aureus subsp. aureus USA300_FPR3757 proline dipeptidase YP_494186.1 1645001 R 451515 CDS YP_494187.1 87161314 3914810 1646167..1646748 1 NC_007793.1 hypothetical protein 1646748 3914810 SAUSA300_1492 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494187.1 1646167 D 451515 CDS YP_494188.1 87161882 3914393 1646762..1646980 1 NC_007793.1 hypothetical protein 1646980 3914393 SAUSA300_1493 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494188.1 1646762 D 451515 CDS YP_494189.1 87160517 3914729 complement(1647044..1647874) 1 NC_007793.1 identified by match to protein family HMM PF03099; hypothetical protein 1647874 3914729 SAUSA300_1494 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494189.1 1647044 R 451515 CDS YP_494190.1 87161014 3913930 1648032..1648418 1 NC_007793.1 identified by match to protein family HMM PF00581; hypothetical protein 1648418 3913930 SAUSA300_1495 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494190.1 1648032 D 451515 CDS YP_494191.1 87160140 3913110 complement(1648783..1650255) 1 NC_007793.1 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 1 to form the P protein; glycine dehydrogenase subunit 2 1650255 3913110 SAUSA300_1496 Staphylococcus aureus subsp. aureus USA300_FPR3757 glycine dehydrogenase subunit 2 YP_494191.1 1648783 R 451515 CDS YP_494192.1 87160707 3912822 complement(1650248..1651594) 1 NC_007793.1 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 2 to form the P protein; glycine dehydrogenase subunit 1 1651594 3912822 SAUSA300_1497 Staphylococcus aureus subsp. aureus USA300_FPR3757 glycine dehydrogenase subunit 1 YP_494192.1 1650248 R 451515 CDS YP_494193.1 87160187 3913255 complement(1651614..1652705) 1 NC_007793.1 catalyzes the transfer of a methylene carbon from the methylamine-loaded GcvH protein to tetrahydrofolate, causing the release of ammonia and the generation of reduced GcvH protein; glycine cleavage system aminomethyltransferase T 1652705 gcvT 3913255 gcvT Staphylococcus aureus subsp. aureus USA300_FPR3757 glycine cleavage system aminomethyltransferase T YP_494193.1 1651614 R 451515 CDS YP_494194.1 87162191 3913888 complement(1652864..1653388) 1 NC_007793.1 identified by match to protein family HMM PF01202; shikimate kinase 1653388 aroK 3913888 aroK Staphylococcus aureus subsp. aureus USA300_FPR3757 shikimate kinase YP_494194.1 1652864 R 451515 CDS YP_494195.1 87161646 3913696 complement(1653621..1654118) 1 NC_007793.1 identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532; hypothetical protein 1654118 3913696 SAUSA300_1500 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494195.1 1653621 R 451515 CDS YP_494196.1 87161113 3914339 complement(1654322..1654768) 1 NC_007793.1 identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532; hypothetical protein 1654768 3914339 SAUSA300_1501 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494196.1 1654322 R 451515 CDS YP_494197.1 87160491 3915081 complement(1654746..1655057) 1 NC_007793.1 identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532; putative competence protein ComGC 1655057 3915081 SAUSA300_1502 Staphylococcus aureus subsp. aureus USA300_FPR3757 putative competence protein ComGC YP_494197.1 1654746 R 451515 CDS YP_494198.1 87159994 3914422 complement(1655071..1656141) 1 NC_007793.1 identified by match to protein family HMM PF00482; putative competence protein ComGB 1656141 3914422 SAUSA300_1503 Staphylococcus aureus subsp. aureus USA300_FPR3757 putative competence protein ComGB YP_494198.1 1655071 R 451515 CDS YP_494199.1 87162001 3915372 complement(1656113..1657087) 1 NC_007793.1 identified by match to protein family HMM PF00437; putative competence protein ComGA 1657087 3915372 SAUSA300_1504 Staphylococcus aureus subsp. aureus USA300_FPR3757 putative competence protein ComGA YP_494199.1 1656113 R 451515 CDS YP_494200.1 87159893 3914939 complement(1657139..1657762) 1 NC_007793.1 identified by match to protein family HMM PF00753; hypothetical protein 1657762 3914939 SAUSA300_1505 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494200.1 1657139 R 451515 CDS YP_494201.1 87161624 3913479 complement(1657759..1658088) 1 NC_007793.1 identified by match to protein family HMM PF01910; match to protein family HMM TIGR00106; hypothetical protein 1658088 3913479 SAUSA300_1506 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494201.1 1657759 R 451515 CDS YP_494202.1 87159982 3914834 complement(1658088..1659074) 1 NC_007793.1 identified by match to protein family HMM PF00480; match to protein family HMM TIGR00744; glucokinase 1659074 glk 3914834 glk Staphylococcus aureus subsp. aureus USA300_FPR3757 glucokinase YP_494202.1 1658088 R 451515 CDS YP_494203.1 87160367 3913241 complement(1659071..1659274) 1 NC_007793.1 identified by match to protein family HMM PF06014; hypothetical protein 1659274 3913241 SAUSA300_1508 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494203.1 1659071 R 451515 CDS YP_494204.1 87160848 3913394 complement(1659255..1660718) 1 NC_007793.1 identified by match to protein family HMM PF01694; match to protein family HMM PF07719; rhomboid family peptidase 1660718 3913394 SAUSA300_1509 Staphylococcus aureus subsp. aureus USA300_FPR3757 rhomboid family peptidase YP_494204.1 1659255 R 451515 CDS YP_494205.1 87159953 3913840 complement(1660730..1661269) 1 NC_007793.1 identified by match to protein family HMM PF01812; match to protein family HMM TIGR02727; 5-formyltetrahydrofolate cyclo-ligase 1661269 3913840 SAUSA300_1510 Staphylococcus aureus subsp. aureus USA300_FPR3757 5-formyltetrahydrofolate cyclo-ligase YP_494205.1 1660730 R 451515 CDS YP_494206.1 87162261 3913179 complement(1661478..1661627) 1 NC_007793.1 in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif; 50S ribosomal protein L33 1661627 rpmG 3913179 rpmG Staphylococcus aureus subsp. aureus USA300_FPR3757 50S ribosomal protein L33 YP_494206.1 1661478 R 451515 CDS YP_494207.1 87161560 3915175 complement(1661740..1663815) 1 NC_007793.1 identified by match to protein family HMM PF00905; match to protein family HMM PF03717; penicillin-binding protein 3 1663815 pbp3 3915175 pbp3 Staphylococcus aureus subsp. aureus USA300_FPR3757 penicillin-binding protein 3 YP_494207.1 1661740 R 451515 CDS YP_494208.1 87161707 3915273 complement(1663936..1664535) 1 NC_007793.1 identified by match to protein family HMM PF00081; match to protein family HMM PF02777; Fe/Mn family superoxide dismutase 1664535 3915273 SAUSA300_1513 Staphylococcus aureus subsp. aureus USA300_FPR3757 Fe/Mn family superoxide dismutase YP_494208.1 1663936 R 451515 CDS YP_494209.1 87161008 3913574 complement(1664812..1665222) 1 NC_007793.1 identified by match to protein family HMM PF01475; ferric uptake regulation protein 1665222 fur 3913574 fur Staphylococcus aureus subsp. aureus USA300_FPR3757 ferric uptake regulation protein YP_494209.1 1664812 R 451515 CDS YP_494210.1 87161856 3913962 complement(1665209..1666072) 1 NC_007793.1 identified by match to protein family HMM PF00950; match to protein family HMM PF01032; ABC transporter permease 1666072 3913962 SAUSA300_1515 Staphylococcus aureus subsp. aureus USA300_FPR3757 ABC transporter permease YP_494210.1 1665209 R 451515 CDS YP_494211.1 87161410 3914098 complement(1666114..1666899) 1 NC_007793.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 1666899 3914098 SAUSA300_1516 Staphylococcus aureus subsp. aureus USA300_FPR3757 ABC transporter ATP-binding protein YP_494211.1 1666114 R 451515 CDS YP_494212.1 87162016 3915387 complement(1667025..1667915) 1 NC_007793.1 Assists in DNA repair by cleaving phosphodiester bonds at apurinic or apyrimidinic sties to produce new 5' ends that are base-free deoxyribose 5-phosphate residues; endonuclease IV 1667915 3915387 SAUSA300_1517 Staphylococcus aureus subsp. aureus USA300_FPR3757 endonuclease IV YP_494212.1 1667025 R 451515 CDS YP_494213.1 87161365 3914764 complement(1667925..1669271) 1 NC_007793.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; DEAD-box ATP dependent DNA helicase 1669271 3914764 SAUSA300_1518 Staphylococcus aureus subsp. aureus USA300_FPR3757 DEAD-box ATP dependent DNA helicase YP_494213.1 1667925 R 451515 CDS YP_494214.1 87161102 3914308 complement(1669385..1670485) 1 NC_007793.1 identified by match to protein family HMM PF01784; match to protein family HMM TIGR00486; hypothetical protein 1670485 3914308 SAUSA300_1519 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494214.1 1669385 R 451515 CDS YP_494215.1 87160036 3913357 complement(1670488..1671165) 1 NC_007793.1 identified by match to protein family HMM PF04816; hypothetical protein 1671165 3913357 SAUSA300_1520 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494215.1 1670488 R 451515 CDS YP_494216.1 87162254 3913172 complement(1671296..1672402) 1 NC_007793.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; primary sigma factor of bacterium; RNA polymerase sigma factor RpoD 1672402 rpoD 3913172 rpoD Staphylococcus aureus subsp. aureus USA300_FPR3757 RNA polymerase sigma factor RpoD YP_494216.1 1671296 R 451515 CDS YP_494217.1 87161696 3914461 complement(1672626..1674425) 1 NC_007793.1 identified by match to protein family HMM PF01751; match to protein family HMM PF01807; match to protein family HMM TIGR01391; DNA primase 1674425 dnaG 3914461 dnaG Staphylococcus aureus subsp. aureus USA300_FPR3757 DNA primase YP_494217.1 1672626 R 451515 CDS YP_494218.1 87161477 3914219 complement(1674486..1675304) 1 NC_007793.1 identified by match to protein family HMM PF03618; hypothetical protein 1675304 3914219 SAUSA300_1523 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494218.1 1674486 R 451515 CDS YP_494219.1 87160265 3913667 complement(1675315..1675854) 1 NC_007793.1 identified by match to protein family HMM PF00571; CBS domain-containing protein 1675854 3913667 SAUSA300_1524 Staphylococcus aureus subsp. aureus USA300_FPR3757 CBS domain-containing protein YP_494219.1 1675315 R 451515 CDS YP_494220.1 87161756 3913901 1676273..1677664 1 NC_007793.1 Catalyzes a two-step reaction, first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase 1677664 glyS 3913901 glyS Staphylococcus aureus subsp. aureus USA300_FPR3757 glycyl-tRNA synthetase YP_494220.1 1676273 D 451515 CDS YP_494221.1 87162406 3913929 complement(1677814..1678566) 1 NC_007793.1 identified by match to protein family HMM PF02565; match to protein family HMM TIGR00613; DNA repair protein RecO 1678566 recO 3913929 recO Staphylococcus aureus subsp. aureus USA300_FPR3757 DNA repair protein RecO YP_494221.1 1677814 R 451515 CDS YP_494222.1 87161238 3914792 complement(1678588..1679487) 1 NC_007793.1 Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome; GTP-binding protein Era 1679487 era 3914792 era Staphylococcus aureus subsp. aureus USA300_FPR3757 GTP-binding protein Era YP_494222.1 1678588 R 451515 CDS YP_494223.1 87160675 3915052 complement(1679488..1679892) 1 NC_007793.1 identified by match to protein family HMM PF00383; match to protein family HMM TIGR01354; cytidine deaminase 1679892 cdd 3915052 cdd Staphylococcus aureus subsp. aureus USA300_FPR3757 cytidine deaminase YP_494223.1 1679488 R 451515 CDS YP_494224.1 87160535 3914015 complement(1679903..1680247) 1 NC_007793.1 identified by match to protein family HMM PF01219; diacylglycerol kinase 1680247 dgkA 3914015 dgkA Staphylococcus aureus subsp. aureus USA300_FPR3757 diacylglycerol kinase YP_494224.1 1679903 R 451515 CDS YP_494225.1 87160129 3912982 complement(1680250..1680717) 1 NC_007793.1 identified by match to protein family HMM PF02130; match to protein family HMM TIGR00043; hypothetical protein 1680717 3912982 SAUSA300_1530 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494225.1 1680250 R 451515 CDS YP_494226.1 87162046 3914322 complement(1680718..1681665) 1 NC_007793.1 identified by match to protein family HMM PF00013; match to protein family HMM PF02562; PhoH family phosphate starvation-induced protein 1681665 phoH 3914322 phoH Staphylococcus aureus subsp. aureus USA300_FPR3757 PhoH family phosphate starvation-induced protein YP_494226.1 1680718 R 451515 CDS YP_494227.1 87160994 3913560 complement(1681969..1682667) 1 NC_007793.1 hypothetical protein 1682667 3913560 SAUSA300_1532 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494227.1 1681969 R 451515 CDS YP_494228.1 87160996 3913562 complement(1682684..1683673) 1 NC_007793.1 identified by match to protein family HMM PF07251; hypothetical protein 1683673 3913562 SAUSA300_1533 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494228.1 1682684 R 451515 CDS YP_494229.1 87160269 3913671 complement(1683691..1684374) 1 NC_007793.1 identified by match to protein family HMM PF01957; hypothetical protein 1684374 3913671 SAUSA300_1534 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494229.1 1683691 R 451515 CDS YP_494230.1 87162355 3914204 complement(1684618..1684794) 1 NC_007793.1 a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 1684794 rpsU 3914204 rpsU Staphylococcus aureus subsp. aureus USA300_FPR3757 30S ribosomal protein S21 YP_494230.1 1684618 R 451515 CDS YP_494231.1 87160469 3913070 complement(1685087..1686433) 1 NC_007793.1 identified by match to protein family HMM PF00919; match to protein family HMM PF01938; match to protein family HMM PF04055; match to protein family HMM TIGR00089; match to protein family HMM TIGR01579; hypothetical protein 1686433 3913070 SAUSA300_1536 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494231.1 1685087 R 451515 CDS YP_494232.1 87161276 3915247 complement(1686440..1687192) 1 NC_007793.1 in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase; 16S ribosomal RNA methyltransferase RsmE 1687192 3915247 SAUSA300_1537 Staphylococcus aureus subsp. aureus USA300_FPR3757 16S ribosomal RNA methyltransferase RsmE YP_494232.1 1686440 R 451515 CDS YP_494233.1 87160836 3913557 complement(1687194..1688132) 1 NC_007793.1 methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype; ribosomal protein L11 methyltransferase 1688132 prmA 3913557 prmA Staphylococcus aureus subsp. aureus USA300_FPR3757 ribosomal protein L11 methyltransferase YP_494233.1 1687194 R 451515 CDS YP_494234.1 87162165 3915196 complement(1688136..1689275) 1 NC_007793.1 chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion; chaperone protein DnaJ 1689275 dnaJ 3915196 dnaJ Staphylococcus aureus subsp. aureus USA300_FPR3757 chaperone protein DnaJ YP_494234.1 1688136 R 451515 CDS YP_494235.1 87161617 3913472 complement(1689411..1691243) 1 NC_007793.1 heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK 1691243 dnaK 3913472 dnaK Staphylococcus aureus subsp. aureus USA300_FPR3757 molecular chaperone DnaK YP_494235.1 1689411 R 451515 CDS YP_494236.1 87161613 3913468 complement(1691312..1691938) 1 NC_007793.1 with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor; heat shock protein GrpE 1691938 grpE 3913468 grpE Staphylococcus aureus subsp. aureus USA300_FPR3757 heat shock protein GrpE YP_494236.1 1691312 R 451515 CDS YP_494237.1 87161015 3913931 complement(1691970..1692947) 1 NC_007793.1 identified by match to protein family HMM PF01628; match to protein family HMM TIGR00331; heat-inducible transcription repressor HrcA 1692947 hrcA 3913931 hrcA Staphylococcus aureus subsp. aureus USA300_FPR3757 heat-inducible transcription repressor HrcA YP_494237.1 1691970 R 451515 CDS YP_494238.1 87160452 3913053 complement(1693047..1694171) 1 NC_007793.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 1694171 3913053 SAUSA300_1543 Staphylococcus aureus subsp. aureus USA300_FPR3757 coproporphyrinogen III oxidase YP_494238.1 1693047 R 451515 CDS YP_494239.1 87161992 3914889 complement(1694734..1696557) 1 NC_007793.1 binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA 1696557 lepA 3914889 lepA Staphylococcus aureus subsp. aureus USA300_FPR3757 GTP-binding protein LepA YP_494239.1 1694734 R 451515 CDS YP_494240.1 87160271 3913673 1696903..1697154 1 NC_007793.1 binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 1697154 rpsT 3913673 rpsT Staphylococcus aureus subsp. aureus USA300_FPR3757 30S ribosomal protein S20 YP_494240.1 1696903 D 451515 CDS YP_494241.1 87162125 3913589 complement(1697199..1698173) 1 NC_007793.1 required for the assembly and function of the DNAX complex which is required for the assembly of the beta subunit onto primed DNA; DNA polymerase III subunit delta 1698173 holA 3913589 holA Staphylococcus aureus subsp. aureus USA300_FPR3757 DNA polymerase III subunit delta YP_494241.1 1697199 R 451515 CDS YP_494242.1 87162384 3913537 complement(1698230..1700431) 1 NC_007793.1 identified by match to protein family HMM PF00753; match to protein family HMM PF03772; match to protein family HMM TIGR00360; match to protein family HMM TIGR00361; DNA internalization-related competence protein ComEC/Rec2 1700431 3913537 SAUSA300_1547 Staphylococcus aureus subsp. aureus USA300_FPR3757 DNA internalization-related competence protein ComEC/Rec2 YP_494242.1 1698230 R 451515 CDS YP_494243.1 87160601 3915220 complement(1700436..1700867) 1 NC_007793.1 identified by match to protein family HMM PF00383; match to protein family HMM TIGR02571; ComE operon protein 2 1700867 3915220 SAUSA300_1548 Staphylococcus aureus subsp. aureus USA300_FPR3757 ComE operon protein 2 YP_494243.1 1700436 R 451515 CDS YP_494244.1 87161682 3914447 complement(1700989..1701675) 1 NC_007793.1 identified by match to protein family HMM PF00633; match to protein family HMM TIGR00426; ComE operon protein 1 1701675 3914447 SAUSA300_1549 Staphylococcus aureus subsp. aureus USA300_FPR3757 ComE operon protein 1 YP_494244.1 1700989 R 451515 CDS YP_494245.1 87162113 3913107 complement(1701715..1702431) 1 NC_007793.1 hypothetical protein 1702431 3913107 SAUSA300_1550 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494245.1 1701715 R 451515 CDS YP_494246.1 87159939 3914985 complement(1702434..1702787) 1 NC_007793.1 identified by match to protein family HMM PF02410; match to protein family HMM TIGR00090; hypothetical protein 1702787 3914985 SAUSA300_1551 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494246.1 1702434 R 451515 CDS YP_494247.1 87160254 3915145 complement(1702788..1703372) 1 NC_007793.1 identified by match to protein family HMM PF01966; match to protein family HMM TIGR00488; hypothetical protein 1703372 3915145 SAUSA300_1552 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494247.1 1702788 R 451515 CDS YP_494248.1 87160964 3915359 complement(1703362..1703931) 1 NC_007793.1 identified by match to protein family HMM PF01467; match to protein family HMM TIGR00125; match to protein family HMM TIGR00482; nicotinate (nicotinamide) nucleotide adenylyltransferase 1703931 nadD 3915359 nadD Staphylococcus aureus subsp. aureus USA300_FPR3757 nicotinate (nicotinamide) nucleotide adenylyltransferase YP_494248.1 1703362 R 451515 CDS YP_494249.1 87161797 3914040 complement(1703934..1704224) 1 NC_007793.1 identified by match to protein family HMM PF01985; match to protein family HMM TIGR00253; hypothetical protein 1704224 3914040 SAUSA300_1554 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494249.1 1703934 R 451515 CDS YP_494250.1 87160694 3914188 complement(1704228..1705034) 1 NC_007793.1 identified by match to protein family HMM PF01488; match to protein family HMM TIGR00507; shikimate 5-dehydrogenase 1705034 aroE 3914188 aroE Staphylococcus aureus subsp. aureus USA300_FPR3757 shikimate 5-dehydrogenase YP_494250.1 1704228 R 451515 CDS YP_494251.1 87160501 3915092 complement(1705048..1706148) 1 NC_007793.1 in Bacillus subtilis this enzyme appears to be involved in 30S ribosomal RNA subunit biogenesis; GTP-binding protein YqeH 1706148 3915092 SAUSA300_1556 Staphylococcus aureus subsp. aureus USA300_FPR3757 GTP-binding protein YqeH YP_494251.1 1705048 R 451515 CDS YP_494252.1 87162418 3915265 complement(1706149..1706676) 1 NC_007793.1 identified by match to protein family HMM TIGR01662; match to protein family HMM TIGR01668; HAD superfamily hydrolase 1706676 3915265 SAUSA300_1557 Staphylococcus aureus subsp. aureus USA300_FPR3757 HAD superfamily hydrolase YP_494252.1 1706149 R 451515 CDS YP_494253.1 87161593 3914377 complement(1706696..1707382) 1 NC_007793.1 identified by match to protein family HMM PF01048; match to protein family HMM TIGR01704; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 1707382 mtnN 3914377 mtnN Staphylococcus aureus subsp. aureus USA300_FPR3757 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase YP_494253.1 1706696 R 451515 CDS YP_494254.1 87161035 3912880 complement(1708167..1708871) 1 NC_007793.1 identified by match to protein family HMM PF01123; match to protein family HMM PF02876; putative enterotoxin type A 1708871 3912880 SAUSA300_1559 Staphylococcus aureus subsp. aureus USA300_FPR3757 putative enterotoxin type A YP_494254.1 1708167 R 451515 CDS YP_494255.1 87161479 3914221 complement(1709333..1710553) 1 NC_007793.1 identified by match to protein family HMM PF02661; hypothetical protein 1710553 3914221 SAUSA300_1560 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494255.1 1709333 R 451515 CDS YP_494256.1 87162281 3915321 complement(1710842..1712071) 1 NC_007793.1 hypothetical protein 1712071 3915321 SAUSA300_1561 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494256.1 1710842 R 451515 CDS YP_494257.1 87160060 3912913 complement(1712084..1712836) 1 NC_007793.1 identified by match to protein family HMM PF03746; LamB/YcsF family protein 1712836 3912913 SAUSA300_1562 Staphylococcus aureus subsp. aureus USA300_FPR3757 LamB/YcsF family protein YP_494257.1 1712084 R 451515 CDS YP_494258.1 87160781 3914601 complement(1712836..1714197) 1 NC_007793.1 identified by match to protein family HMM PF00289; match to protein family HMM PF01071; match to protein family HMM PF02222; match to protein family HMM PF02785; match to protein family HMM PF02786; acetyl-CoA carboxylase, biotin carboxylase 1714197 accC 3914601 accC Staphylococcus aureus subsp. aureus USA300_FPR3757 acetyl-CoA carboxylase, biotin carboxylase YP_494258.1 1712836 R 451515 CDS YP_494259.1 87160920 3914358 complement(1714211..1714660) 1 NC_007793.1 identified by match to protein family HMM PF00364; acetyl-CoA carboxylase, biotin carboxyl carrier protein 1714660 accB 3914358 accB Staphylococcus aureus subsp. aureus USA300_FPR3757 acetyl-CoA carboxylase, biotin carboxyl carrier protein YP_494259.1 1714211 R 451515 CDS YP_494260.1 87160239 3915130 complement(1714662..1715576) 1 NC_007793.1 identified by match to protein family HMM PF02626; hypothetical protein 1715576 3915130 SAUSA300_1565 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494260.1 1714662 R 451515 CDS YP_494261.1 87160978 3913310 complement(1715662..1716363) 1 NC_007793.1 identified by match to protein family HMM PF02682; match to protein family HMM TIGR00370; hypothetical protein 1716363 3913310 SAUSA300_1566 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494261.1 1715662 R 451515 CDS YP_494262.1 87161697 3914462 complement(1716722..1717198) 1 NC_007793.1 necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus; transcription elongation factor GreA 1717198 greA 3914462 greA Staphylococcus aureus subsp. aureus USA300_FPR3757 transcription elongation factor GreA YP_494262.1 1716722 R 451515 CDS YP_494263.1 87162340 3913824 complement(1717226..1717849) 1 NC_007793.1 functions in pyrimidine salvage; pyrimidine ribonucleoside kinase; phosphorylates nucleosides or dinucleosides to make UMP or CMP using ATP or GTP as the donor; uridine kinase 1717849 udk 3913824 udk Staphylococcus aureus subsp. aureus USA300_FPR3757 uridine kinase YP_494263.1 1717226 R 451515 CDS YP_494264.1 87160049 3912902 complement(1717849..1719117) 1 NC_007793.1 identified by match to protein family HMM PF01136; U32 family peptidase 1719117 3912902 SAUSA300_1569 Staphylococcus aureus subsp. aureus USA300_FPR3757 U32 family peptidase YP_494264.1 1717849 R 451515 CDS YP_494265.1 87160834 3913555 complement(1719129..1720052) 1 NC_007793.1 identified by match to protein family HMM PF01136; U32 family peptidase 1720052 3913555 SAUSA300_1570 Staphylococcus aureus subsp. aureus USA300_FPR3757 U32 family peptidase YP_494265.1 1719129 R 451515 CDS YP_494266.1 87161205 3912780 complement(1720055..1720693) 1 NC_007793.1 identified by match to protein family HMM PF01596; O-methyltransferase family protein 1720693 3912780 SAUSA300_1571 Staphylococcus aureus subsp. aureus USA300_FPR3757 O-methyltransferase family protein YP_494266.1 1720055 R 451515 CDS YP_494267.1 87161527 3913201 complement(1720978..1721286) 1 NC_007793.1 identified by match to protein family HMM PF06949; hypothetical protein 1721286 3913201 SAUSA300_1572 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494267.1 1720978 R 451515 CDS YP_494268.1 87160105 3913368 complement(1721301..1721729) 1 NC_007793.1 similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function; Holliday junction resolvase-like protein 1721729 3913368 SAUSA300_1573 Staphylococcus aureus subsp. aureus USA300_FPR3757 Holliday junction resolvase-like protein YP_494268.1 1721301 R 451515 CDS YP_494269.1 87160508 3915099 complement(1721733..1721993) 1 NC_007793.1 identified by match to protein family HMM PF06135; hypothetical protein 1721993 3915099 SAUSA300_1574 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494269.1 1721733 R 451515 CDS YP_494270.1 87161149 3914494 complement(1722056..1724686) 1 NC_007793.1 Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase 1724686 alaS 3914494 alaS Staphylococcus aureus subsp. aureus USA300_FPR3757 alanyl-tRNA synthetase YP_494270.1 1722056 R 451515 CDS YP_494271.1 87160428 3913146 complement(1725029..1727506) 1 NC_007793.1 identified by match to protein family HMM TIGR01448; RecD/TraA family helicase 1727506 3913146 SAUSA300_1576 Staphylococcus aureus subsp. aureus USA300_FPR3757 RecD/TraA family helicase YP_494271.1 1725029 R 451515 CDS YP_494272.1 87162270 3913188 complement(1727508..1728176) 1 NC_007793.1 identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07720; TPR domain-containing protein 1728176 3913188 SAUSA300_1577 Staphylococcus aureus subsp. aureus USA300_FPR3757 TPR domain-containing protein YP_494272.1 1727508 R 451515 CDS YP_494273.1 87162110 3913104 complement(1728638..1729723) 1 NC_007793.1 catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA 1729723 mnmA 3913104 mnmA Staphylococcus aureus subsp. aureus USA300_FPR3757 tRNA-specific 2-thiouridylase MnmA YP_494273.1 1728638 R 451515 CDS YP_494274.1 87162404 3913927 complement(1729757..1730899) 1 NC_007793.1 identified by match to protein family HMM PF00266; match to protein family HMM PF00282; aminotransferase, class V 1730899 3913927 SAUSA300_1579 Staphylococcus aureus subsp. aureus USA300_FPR3757 aminotransferase, class V YP_494274.1 1729757 R 451515 CDS YP_494275.1 87160678 3915055 1731211..1732224 1 NC_007793.1 identified by match to protein family HMM PF00296; luciferase family protein 1732224 3915055 SAUSA300_1580 Staphylococcus aureus subsp. aureus USA300_FPR3757 luciferase family protein YP_494275.1 1731211 D 451515 CDS YP_494276.1 87160135 3912988 complement(1732461..1732607) 1 NC_007793.1 hypothetical protein 1732607 3912988 SAUSA300_1581 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494276.1 1732461 R 451515 CDS YP_494277.1 87162159 3915190 complement(1732647..1732829) 1 NC_007793.1 identified by match to protein family HMM PF05532; hypothetical protein 1732829 3915190 SAUSA300_1582 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494277.1 1732647 R 451515 CDS YP_494278.1 87161573 3913642 complement(1732929..1733351) 1 NC_007793.1 identified by match to protein family HMM PF02082; match to protein family HMM TIGR00738; hypothetical protein 1733351 3913642 SAUSA300_1583 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494278.1 1732929 R 451515 CDS YP_494279.2 162138568 3914522 1733436..1734710 1 NC_007793.1 identified by match to protein family HMM PF00004; recombination factor protein RarA 1734710 3914522 SAUSA300_1584 Staphylococcus aureus subsp. aureus USA300_FPR3757 recombination factor protein RarA YP_494279.2 1733436 D 451515 CDS YP_494280.1 87161263 3915234 complement(1734871..1735644) 1 NC_007793.1 identified by match to protein family HMM PF00899; hypothetical protein 1735644 3915234 SAUSA300_1585 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494280.1 1734871 R 451515 CDS YP_494281.1 87160735 3913436 complement(1736105..1737871) 1 NC_007793.1 catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase 1737871 aspS 3913436 aspS Staphylococcus aureus subsp. aureus USA300_FPR3757 aspartyl-tRNA synthetase YP_494281.1 1736105 R 451515 CDS YP_494282.1 87160141 3913111 complement(1737887..1739149) 1 NC_007793.1 catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase 1739149 hisS 3913111 hisS Staphylococcus aureus subsp. aureus USA300_FPR3757 histidyl-tRNA synthetase YP_494282.1 1737887 R 451515 CDS YP_494283.1 87160775 3913750 complement(1739610..1740485) 1 NC_007793.1 identified by match to protein family HMM PF01520; N-acetylmuramoyl-L-alanine amidase 1740485 lytH 3913750 lytH Staphylococcus aureus subsp. aureus USA300_FPR3757 N-acetylmuramoyl-L-alanine amidase YP_494283.1 1739610 R 451515 CDS YP_494284.1 87160075 3913299 complement(1740482..1740934) 1 NC_007793.1 hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine; D-tyrosyl-tRNA(Tyr) deacylase 1740934 dtd 3913299 dtd Staphylococcus aureus subsp. aureus USA300_FPR3757 D-tyrosyl-tRNA(Tyr) deacylase YP_494284.1 1740482 R 451515 CDS YP_494285.1 87162370 3913523 complement(1740946..1743156) 1 NC_007793.1 identified by match to protein family HMM PF01842; match to protein family HMM PF01966; match to protein family HMM PF02824; match to protein family HMM PF04607; match to protein family HMM TIGR00691; GTP pyrophosphokinase 1743156 3913523 SAUSA300_1590 Staphylococcus aureus subsp. aureus USA300_FPR3757 GTP pyrophosphokinase YP_494285.1 1740946 R 451515 CDS YP_494286.1 87161528 3913202 complement(1743563..1744081) 1 NC_007793.1 catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis; adenine phosphoribosyltransferase 1744081 apt 3913202 apt Staphylococcus aureus subsp. aureus USA300_FPR3757 adenine phosphoribosyltransferase YP_494286.1 1743563 R 451515 CDS YP_494287.1 87159970 3914822 complement(1744103..1746376) 1 NC_007793.1 identified by match to protein family HMM PF01368; match to protein family HMM PF02272; match to protein family HMM TIGR00644; single-stranded-DNA-specific exonuclease RecJ 1746376 recJ 3914822 recJ Staphylococcus aureus subsp. aureus USA300_FPR3757 single-stranded-DNA-specific exonuclease RecJ YP_494287.1 1744103 R 451515 CDS YP_494288.2 162138566 3914727 complement(1746579..1748858) 1 NC_007793.1 part of the preprotein secretory system; forms a complex with protein YajC; SecDFyajC stimulates the proton motive force-driven protein translocation, seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF; bifunctional preprotein translocase subunit SecD/SecF 1748858 secF 3914727 secF Staphylococcus aureus subsp. aureus USA300_FPR3757 bifunctional preprotein translocase subunit SecD/SecF YP_494288.2 1746579 R 451515 CDS YP_494289.1 87161434 3914083 complement(1749133..1749393) 1 NC_007793.1 identified by match to protein family HMM PF02699; match to protein family HMM TIGR00739; preprotein translocase subunit YajC 1749393 yajC 3914083 yajC Staphylococcus aureus subsp. aureus USA300_FPR3757 preprotein translocase subunit YajC YP_494289.1 1749133 R 451515 CDS YP_494290.1 87162122 3913586 complement(1749412..1750551) 1 NC_007793.1 Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr); queuine tRNA-ribosyltransferase 1750551 tgt 3913586 tgt Staphylococcus aureus subsp. aureus USA300_FPR3757 queuine tRNA-ribosyltransferase YP_494290.1 1749412 R 451515 CDS YP_494291.1 87162434 3915030 complement(1750574..1751599) 1 NC_007793.1 Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step; S-adenosylmethionine:tRNA ribosyltransferase-isomerase 1751599 queA 3915030 queA Staphylococcus aureus subsp. aureus USA300_FPR3757 S-adenosylmethionine:tRNA ribosyltransferase-isomerase YP_494291.1 1750574 R 451515 CDS YP_494292.1 87160402 3912847 complement(1751601..1752605) 1 NC_007793.1 promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB 1752605 ruvB 3912847 ruvB Staphylococcus aureus subsp. aureus USA300_FPR3757 Holliday junction DNA helicase RuvB YP_494292.1 1751601 R 451515 CDS YP_494293.1 87160146 3913116 complement(1752637..1753239) 1 NC_007793.1 plays an essential role in ATP-dependent branch migration of the Holliday junction; Holliday junction DNA helicase RuvA 1753239 ruvA 3913116 ruvA Staphylococcus aureus subsp. aureus USA300_FPR3757 Holliday junction DNA helicase RuvA YP_494293.1 1752637 R 451515 CDS YP_494294.1 87160975 3913307 complement(1753253..1753708) 1 NC_007793.1 identified by match to protein family HMM PF01842; hypothetical protein 1753708 3913307 SAUSA300_1599 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494294.1 1753253 R 451515 CDS YP_494295.1 87161323 3915294 complement(1753721..1755013) 1 NC_007793.1 essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE 1755013 obgE 3915294 obgE Staphylococcus aureus subsp. aureus USA300_FPR3757 GTPase ObgE YP_494295.1 1753721 R 451515 CDS YP_494296.1 87161828 3913799 complement(1755368..1755652) 1 NC_007793.1 involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 1755652 rpmA 3913799 rpmA Staphylococcus aureus subsp. aureus USA300_FPR3757 50S ribosomal protein L27 YP_494296.1 1755368 R 451515 CDS YP_494297.1 87160413 3913131 complement(1755664..1755984) 1 NC_007793.1 identified by match to protein family HMM PF04327; hypothetical protein 1755984 3913131 SAUSA300_1602 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494297.1 1755664 R 451515 CDS YP_494298.1 87161329 3915300 complement(1755990..1756298) 1 NC_007793.1 identified by match to protein family HMM PF00829; match to protein family HMM TIGR00061; 50S ribosomal protein L21 1756298 rplU 3915300 rplU Staphylococcus aureus subsp. aureus USA300_FPR3757 50S ribosomal protein L21 YP_494298.1 1755990 R 451515 CDS YP_494299.1 87161575 3913644 complement(1756465..1756995) 1 NC_007793.1 identified by match to protein family HMM PF04093; rod shape-determining protein MreD 1756995 mreD 3913644 mreD Staphylococcus aureus subsp. aureus USA300_FPR3757 rod shape-determining protein MreD YP_494299.1 1756465 R 451515 CDS YP_494300.1 87160285 3913492 complement(1756995..1757837) 1 NC_007793.1 in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall; rod shape-determining protein MreC 1757837 mreC 3913492 mreC Staphylococcus aureus subsp. aureus USA300_FPR3757 rod shape-determining protein MreC YP_494300.1 1756995 R 451515 CDS YP_494301.1 87161000 3913566 complement(1758230..1758703) 1 NC_007793.1 hypothetical protein 1758703 3913566 SAUSA300_1606 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494301.1 1758230 R 451515 CDS YP_494302.1 87161774 3913628 complement(1759177..1759461) 1 NC_007793.1 hypothetical protein 1759461 3913628 SAUSA300_1607 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494302.1 1759177 R 451515 CDS YP_494303.1 87161721 3915287 complement(1759529..1760185) 1 NC_007793.1 Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase; DNA repair protein RadC 1760185 radC 3915287 radC Staphylococcus aureus subsp. aureus USA300_FPR3757 DNA repair protein RadC YP_494303.1 1759529 R 451515 CDS YP_494304.1 87162388 3913910 complement(1760212..1760919) 1 NC_007793.1 identified by match to protein family HMM PF01478; match to protein family HMM PF06750; type III leader peptidase family protein 1760919 3913910 SAUSA300_1609 Staphylococcus aureus subsp. aureus USA300_FPR3757 type III leader peptidase family protein YP_494304.1 1760212 R 451515 CDS YP_494305.1 87159900 3914946 complement(1761189..1762460) 1 NC_007793.1 identified by match to protein family HMM PF02875; match to protein family HMM TIGR01499; folylpolyglutamate synthase 1762460 folC 3914946 folC Staphylococcus aureus subsp. aureus USA300_FPR3757 folylpolyglutamate synthase YP_494305.1 1761189 R 451515 CDS YP_494306.1 87160762 3913737 complement(1762473..1765103) 1 NC_007793.1 valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain; valyl-tRNA synthetase 1765103 valS 3913737 valS Staphylococcus aureus subsp. aureus USA300_FPR3757 valyl-tRNA synthetase YP_494306.1 1762473 R 451515 CDS YP_494307.1 87160315 3915390 1765506..1766066 1 NC_007793.1 identified by match to protein family HMM PF03352; DNA-3-methyladenine glycosidase 1766066 tag 3915390 tag Staphylococcus aureus subsp. aureus USA300_FPR3757 DNA-3-methyladenine glycosidase YP_494307.1 1765506 D 451515 CDS YP_494308.1 87160900 3915151 complement(1766289..1767362) 1 NC_007793.1 identified by match to protein family HMM PF05145; putative abrB protein 1767362 3915151 SAUSA300_1613 Staphylococcus aureus subsp. aureus USA300_FPR3757 putative abrB protein YP_494308.1 1766289 R 451515 CDS YP_494309.1 87161814 3914650 complement(1767558..1768844) 1 NC_007793.1 Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway; glutamate-1-semialdehyde aminotransferase 1768844 hemL 3914650 hemL Staphylococcus aureus subsp. aureus USA300_FPR3757 glutamate-1-semialdehyde aminotransferase YP_494309.1 1767558 R 451515 CDS YP_494310.1 87161693 3914458 complement(1768892..1769866) 1 NC_007793.1 catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase 1769866 hemB 3914458 hemB Staphylococcus aureus subsp. aureus USA300_FPR3757 delta-aminolevulinic acid dehydratase YP_494310.1 1768892 R 451515 CDS YP_494311.1 87160955 3915350 complement(1769869..1770537) 1 NC_007793.1 identified by match to protein family HMM PF02602; uroporphyrinogen III synthase 1770537 hemD 3915350 hemD Staphylococcus aureus subsp. aureus USA300_FPR3757 uroporphyrinogen III synthase YP_494311.1 1769869 R 451515 CDS YP_494312.1 87160322 3915397 complement(1770559..1771485) 1 NC_007793.1 transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis; porphobilinogen deaminase 1771485 hemC 3915397 hemC Staphylococcus aureus subsp. aureus USA300_FPR3757 porphobilinogen deaminase YP_494312.1 1770559 R 451515 CDS YP_494313.1 87161525 3913199 complement(1771527..1772342) 1 NC_007793.1 identified by match to protein family HMM PF01578; hemA concentration negative effector hemX 1772342 hemX 3913199 hemX Staphylococcus aureus subsp. aureus USA300_FPR3757 hemA concentration negative effector hemX YP_494313.1 1771527 R 451515 CDS YP_494314.1 87160833 3913554 complement(1772364..1773710) 1 NC_007793.1 catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins; glutamyl-tRNA reductase 1773710 hemA 3913554 hemA Staphylococcus aureus subsp. aureus USA300_FPR3757 glutamyl-tRNA reductase YP_494314.1 1772364 R 451515 CDS YP_494315.1 87160096 3914929 complement(1773927..1774517) 1 NC_007793.1 binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential; ribosome biogenesis GTP-binding protein YsxC 1774517 engB 3914929 engB Staphylococcus aureus subsp. aureus USA300_FPR3757 ribosome biogenesis GTP-binding protein YsxC YP_494315.1 1773927 R 451515 CDS YP_494316.1 87161950 3913707 complement(1774671..1775933) 1 NC_007793.1 binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX 1775933 clpX 3913707 clpX Staphylococcus aureus subsp. aureus USA300_FPR3757 ATP-dependent protease ATP-binding subunit ClpX YP_494316.1 1774671 R 451515 CDS YP_494317.1 87160551 3913506 complement(1776084..1777385) 1 NC_007793.1 Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer; trigger factor 1777385 tig 3913506 tig Staphylococcus aureus subsp. aureus USA300_FPR3757 trigger factor YP_494317.1 1776084 R 451515 CDS YP_494318.1 87159969 3914821 complement(1777548..1778477) 1 NC_007793.1 hypothetical protein 1778477 3914821 SAUSA300_1623 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494318.1 1777548 R 451515 CDS YP_494319.1 87160388 3912814 complement(1778496..1779104) 1 NC_007793.1 identified by match to protein family HMM PF00293; MutT/nudix family protein 1779104 3912814 SAUSA300_1624 Staphylococcus aureus subsp. aureus USA300_FPR3757 MutT/nudix family protein YP_494319.1 1778496 R 451515 CDS YP_494320.1 87162399 3913922 complement(1779246..1779602) 1 NC_007793.1 binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 1779602 rplT 3913922 rplT Staphylococcus aureus subsp. aureus USA300_FPR3757 50S ribosomal protein L20 YP_494320.1 1779246 R 451515 CDS YP_494321.1 87161342 3912859 complement(1779649..1779849) 1 NC_007793.1 identified by match to protein family HMM PF01632; match to protein family HMM TIGR00001; 50S ribosomal protein L35 1779849 rpmI 3912859 rpmI Staphylococcus aureus subsp. aureus USA300_FPR3757 50S ribosomal protein L35 YP_494321.1 1779649 R 451515 CDS YP_494322.1 87160953 3913793 complement(1779878..1780405) 1 NC_007793.1 IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits; translation initiation factor IF-3 1780405 infC 3913793 infC Staphylococcus aureus subsp. aureus USA300_FPR3757 translation initiation factor IF-3 YP_494322.1 1779878 R 451515 CDS YP_494323.1 87161865 3914553 complement(1780634..1782127) 1 NC_007793.1 identified by match to protein family HMM PF00324; lysine-specific permease 1782127 lysP 3914553 lysP Staphylococcus aureus subsp. aureus USA300_FPR3757 lysine-specific permease YP_494323.1 1780634 R 451515 CDS YP_494324.1 87161367 3914766 complement(1782553..1784490) 1 NC_007793.1 catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); threonyl-tRNA synthetase 1784490 thrS 3914766 thrS Staphylococcus aureus subsp. aureus USA300_FPR3757 threonyl-tRNA synthetase YP_494324.1 1782553 R 451515 CDS YP_494325.1 87161691 3914456 complement(1784903..1785823) 1 NC_007793.1 Primosomal protein that may act to load helicase DnaC during DNA replication; primosomal protein DnaI 1785823 dnaI 3914456 dnaI Staphylococcus aureus subsp. aureus USA300_FPR3757 primosomal protein DnaI YP_494325.1 1784903 R 451515 CDS YP_494326.1 87159925 3914971 complement(1785823..1787223) 1 NC_007793.1 identified by match to protein family HMM PF07261; replication initiation and membrane attachment protein 1787223 3914971 SAUSA300_1631 Staphylococcus aureus subsp. aureus USA300_FPR3757 replication initiation and membrane attachment protein YP_494326.1 1785823 R 451515 CDS YP_494327.1 87162437 3915033 complement(1787224..1787694) 1 NC_007793.1 identified by match to protein family HMM PF03477; match to protein family HMM TIGR00244; transcriptional regulator NrdR 1787694 nrdR 3915033 nrdR Staphylococcus aureus subsp. aureus USA300_FPR3757 transcriptional regulator NrdR YP_494327.1 1787224 R 451515 CDS YP_494328.1 87161716 3915282 complement(1787904..1788929) 1 NC_007793.1 identified by match to protein family HMM PF00044; match to protein family HMM PF02800; match to protein family HMM TIGR01534; glyceraldehyde 3-phosphate dehydrogenase 2 1788929 gap 3915282 gap Staphylococcus aureus subsp. aureus USA300_FPR3757 glyceraldehyde 3-phosphate dehydrogenase 2 YP_494328.1 1787904 R 451515 CDS YP_494329.1 87161011 3913577 complement(1789099..1789722) 1 NC_007793.1 catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis; dephospho-CoA kinase 1789722 coaE 3913577 coaE Staphylococcus aureus subsp. aureus USA300_FPR3757 dephospho-CoA kinase YP_494329.1 1789099 R 451515 CDS YP_494330.1 87161684 3914449 complement(1789738..1790610) 1 NC_007793.1 identified by match to protein family HMM PF01149; match to protein family HMM PF06831; match to protein family HMM TIGR00577; formamidopyrimidine-DNA glycosylase 1790610 mutM 3914449 mutM Staphylococcus aureus subsp. aureus USA300_FPR3757 formamidopyrimidine-DNA glycosylase YP_494330.1 1789738 R 451515 CDS YP_494331.1 87161466 3914057 complement(1790626..1793256) 1 NC_007793.1 identified by match to protein family HMM PF00476; match to protein family HMM PF01367; match to protein family HMM PF02739; match to protein family HMM TIGR00593; DNA polymerase I superfamily protein 1793256 polA 3914057 polA Staphylococcus aureus subsp. aureus USA300_FPR3757 DNA polymerase I superfamily protein YP_494331.1 1790626 R 451515 CDS YP_494332.1 87160238 3915129 complement(1793550..1795037) 1 NC_007793.1 hypothetical protein 1795037 3915129 SAUSA300_1637 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494332.1 1793550 R 451515 CDS YP_494333.1 87160006 3912917 complement(1795536..1797197) 1 NC_007793.1 sensory box histidine kinase PhoR 1797197 phoR 3912917 phoR Staphylococcus aureus subsp. aureus USA300_FPR3757 sensory box histidine kinase PhoR YP_494333.1 1795536 R 451515 CDS YP_494334.1 87162022 3914279 complement(1797197..1797901) 1 NC_007793.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486; alkaline phosphatase synthesis transcriptional regulatory protein 1797901 phoP 3914279 phoP Staphylococcus aureus subsp. aureus USA300_FPR3757 alkaline phosphatase synthesis transcriptional regulatory protein YP_494334.1 1797197 R 451515 CDS YP_494335.1 87161670 3914435 complement(1798291..1799559) 1 NC_007793.1 Converts isocitrate to alpha ketoglutarate; isocitrate dehydrogenase 1799559 icd 3914435 icd Staphylococcus aureus subsp. aureus USA300_FPR3757 isocitrate dehydrogenase YP_494335.1 1798291 R 451515 CDS YP_494336.1 87161124 3914350 complement(1799608..1800729) 1 NC_007793.1 catalyzes the formation of citrate from acetyl-CoA and oxaloacetate; citrate synthase 1800729 gltA 3914350 gltA Staphylococcus aureus subsp. aureus USA300_FPR3757 citrate synthase YP_494336.1 1799608 R 451515 CDS YP_494337.1 87160222 3913760 1801077..1802438 1 NC_007793.1 identified by match to protein family HMM PF00324; D-serine/D-alanine/glycine transporter 1802438 3913760 SAUSA300_1642 Staphylococcus aureus subsp. aureus USA300_FPR3757 D-serine/D-alanine/glycine transporter YP_494337.1 1801077 D 451515 CDS YP_494338.1 87162024 3914281 complement(1804763..1806520) 1 NC_007793.1 identified by match to protein family HMM PF00224; match to protein family HMM PF00391; match to protein family HMM PF02887; match to protein family HMM TIGR01064; pyruvate kinase 1806520 pyk 3914281 pyk Staphylococcus aureus subsp. aureus USA300_FPR3757 pyruvate kinase YP_494338.1 1804763 R 451515 CDS YP_494339.1 87160338 3915113 complement(1806542..1807465) 1 NC_007793.1 catalyzes the formation of D-fructose 1,6-bisphosphate from D-fructose 6-phosphate in glycolysis; 6-phosphofructokinase 1807465 pfkA 3915113 pfkA Staphylococcus aureus subsp. aureus USA300_FPR3757 6-phosphofructokinase YP_494339.1 1806542 R 451515 CDS YP_494340.1 87161119 3914345 complement(1807779..1808723) 1 NC_007793.1 catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein; acetyl-CoA carboxylase carboxyltransferase subunit alpha 1808723 accA 3914345 accA Staphylococcus aureus subsp. aureus USA300_FPR3757 acetyl-CoA carboxylase carboxyltransferase subunit alpha YP_494340.1 1807779 R 451515 CDS YP_494341.1 87161730 3913016 complement(1808723..1809580) 1 NC_007793.1 catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer of AccA2D2 subunits; acetyl-CoA carboxylase subunit beta 1809580 accD 3913016 accD Staphylococcus aureus subsp. aureus USA300_FPR3757 acetyl-CoA carboxylase subunit beta YP_494341.1 1808723 R 451515 CDS YP_494342.1 87161326 3915297 complement(1809775..1811004) 1 NC_007793.1 identified by match to protein family HMM PF00390; match to protein family HMM PF03949; putative NADP-dependent malic enzyme 1811004 3915297 SAUSA300_1648 Staphylococcus aureus subsp. aureus USA300_FPR3757 putative NADP-dependent malic enzyme YP_494342.1 1809775 R 451515 CDS YP_494343.1 87161888 3914399 complement(1811454..1814651) 1 NC_007793.1 identified by match to protein family HMM PF01336; match to protein family HMM PF02811; match to protein family HMM PF07733; match to protein family HMM TIGR00594; DNA polymerase III, alpha subunit 1814651 dnaE 3914399 dnaE Staphylococcus aureus subsp. aureus USA300_FPR3757 DNA polymerase III, alpha subunit YP_494343.1 1811454 R 451515 CDS YP_494344.1 87160174 3914526 complement(1814672..1815613) 1 NC_007793.1 identified by match to protein family HMM PF01368; match to protein family HMM PF02272; hypothetical protein 1815613 3914526 SAUSA300_1650 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494344.1 1814672 R 451515 CDS YP_494345.1 87160983 3913315 complement(1815874..1817172) 1 NC_007793.1 identified by match to protein family HMM PF00571; match to protein family HMM PF07085; CBS domain-containing protein 1817172 3913315 SAUSA300_1651 Staphylococcus aureus subsp. aureus USA300_FPR3757 CBS domain-containing protein YP_494345.1 1815874 R 451515 CDS YP_494346.1 87160786 3914606 1817377..1817790 1 NC_007793.1 identified by match to protein family HMM PF00582; hypothetical protein 1817790 3914606 SAUSA300_1652 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494346.1 1817377 D 451515 CDS YP_494347.1 87161158 3914503 complement(1818095..1818784) 1 NC_007793.1 catalyzes the opening and hydrolysis of the beta-lactam ring of beta-lactam antibiotics such as penicillins and cephalosporins; metal-dependent hydrolase 1818784 3914503 SAUSA300_1653 Staphylococcus aureus subsp. aureus USA300_FPR3757 metal-dependent hydrolase YP_494347.1 1818095 R 451515 CDS YP_494348.1 87160237 3913775 1818959..1820014 1 NC_007793.1 identified by match to protein family HMM PF00557; proline dipeptidase 1820014 3913775 SAUSA300_1654 Staphylococcus aureus subsp. aureus USA300_FPR3757 proline dipeptidase YP_494348.1 1818959 D 451515 CDS YP_494349.1 87161391 3914161 complement(1820330..1821448) 1 NC_007793.1 identified by match to protein family HMM PF01262; match to protein family HMM PF01488; match to protein family HMM PF05222; match to protein family HMM TIGR00518; alanine dehydrogenase 1821448 ald 3914161 ald Staphylococcus aureus subsp. aureus USA300_FPR3757 alanine dehydrogenase YP_494349.1 1820330 R 451515 CDS YP_494350.1 87162087 3914630 1821589..1822089 1 NC_007793.1 identified by match to protein family HMM PF00582; universal stress protein 1822089 3914630 SAUSA300_1656 Staphylococcus aureus subsp. aureus USA300_FPR3757 universal stress protein YP_494350.1 1821589 D 451515 CDS YP_494351.1 87159967 3914819 complement(1822335..1823537) 1 NC_007793.1 AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation; utilizes magnesium and ATP; also involved in conversion of acetate to aceyl-CoA; acetate kinase 1823537 ackA 3914819 ackA Staphylococcus aureus subsp. aureus USA300_FPR3757 acetate kinase YP_494351.1 1822335 R 451515 CDS YP_494352.1 87160611 3913272 complement(1823625..1824572) 1 NC_007793.1 hypothetical protein 1824572 3913272 SAUSA300_1658 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494352.1 1823625 R 451515 CDS YP_494353.1 87161687 3914452 complement(1824695..1825189) 1 NC_007793.1 antioxidant activity; thioredoxin-dependent thiol peroxidase; forms homodimers in solution; shows substrate specificity to alkyl hydroperoxides; periplasmic protein; thiol peroxidase 1825189 tpx 3914452 tpx Staphylococcus aureus subsp. aureus USA300_FPR3757 thiol peroxidase YP_494353.1 1824695 R 451515 CDS YP_494354.1 87162168 3915199 complement(1825287..1826057) 1 NC_007793.1 identified by match to protein family HMM PF01925; hypothetical protein 1826057 3915199 SAUSA300_1660 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494354.1 1825287 R 451515 CDS YP_494355.1 87160466 3913067 complement(1826101..1827324) 1 NC_007793.1 Required for the synthesis of the thiazole moiety; thiamine biosynthesis protein ThiI 1827324 thiI 3913067 thiI Staphylococcus aureus subsp. aureus USA300_FPR3757 thiamine biosynthesis protein ThiI YP_494355.1 1826101 R 451515 CDS YP_494356.1 87161350 3912867 complement(1827324..1828463) 1 NC_007793.1 identified by match to protein family HMM PF00266; aminotransferase, class V 1828463 3912867 SAUSA300_1662 Staphylococcus aureus subsp. aureus USA300_FPR3757 aminotransferase, class V YP_494356.1 1827324 R 451515 CDS YP_494357.1 87161580 3913649 1828621..1828761 1 NC_007793.1 hypothetical protein 1828761 3913649 SAUSA300_1663 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494357.1 1828621 D 451515 CDS YP_494358.1 87161029 3913945 complement(1828835..1830529) 1 NC_007793.1 acts to negatively regulates ftsZ ring formation by modulating the frequency and position of the ftsZ ring formation; septation ring formation regulator EzrA 1830529 ezrA 3913945 ezrA Staphylococcus aureus subsp. aureus USA300_FPR3757 septation ring formation regulator EzrA YP_494358.1 1828835 R 451515 CDS YP_494359.1 87161606 3914390 1830666..1831130 1 NC_007793.1 identified by match to protein family HMM PF01590; hypothetical protein 1831130 3914390 SAUSA300_1665 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494359.1 1830666 D 451515 CDS YP_494360.1 87159914 3914960 1831374..1831976 1 NC_007793.1 primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 1831976 rpsD 3914960 rpsD Staphylococcus aureus subsp. aureus USA300_FPR3757 30S ribosomal protein S4 YP_494360.1 1831374 D 451515 CDS YP_494361.1 87160461 3913062 complement(1832192..1832935) 1 NC_007793.1 identified by match to protein family HMM PF03009; putative glycerophosphoryl diester phosphodiesterase 1832935 3913062 SAUSA300_1667 Staphylococcus aureus subsp. aureus USA300_FPR3757 putative glycerophosphoryl diester phosphodiesterase YP_494361.1 1832192 R 451515 CDS YP_494362.1 87161492 3914234 1833015..1833461 1 NC_007793.1 identified by match to protein family HMM PF02566; OsmC/Ohr family protein 1833461 3914234 SAUSA300_1668 Staphylococcus aureus subsp. aureus USA300_FPR3757 OsmC/Ohr family protein YP_494362.1 1833015 D 451515 CDS YP_494363.1 87162059 3914238 1833575..1834735 1 NC_007793.1 identified by match to protein family HMM PF00266; aminotransferase, class V 1834735 3914238 SAUSA300_1669 Staphylococcus aureus subsp. aureus USA300_FPR3757 aminotransferase, class V YP_494363.1 1833575 D 451515 CDS YP_494364.1 87160337 3915112 1834722..1836326 1 NC_007793.1 catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate; D-3-phosphoglycerate dehydrogenase 1836326 serA 3915112 serA Staphylococcus aureus subsp. aureus USA300_FPR3757 D-3-phosphoglycerate dehydrogenase YP_494364.1 1834722 D 451515 CDS YP_494365.1 87161042 3912887 complement(1836476..1837606) 1 NC_007793.1 hypothetical protein 1837606 3912887 SAUSA300_1671 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494365.1 1836476 R 451515 CDS YP_494366.1 87161427 3914076 complement(1837713..1839179) 1 NC_007793.1 identified by match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR01998; phosphotransferase system, N-acetylglucosamine-specific IIBC component 1839179 nagE 3914076 nagE Staphylococcus aureus subsp. aureus USA300_FPR3757 phosphotransferase system, N-acetylglucosamine-specific IIBC component YP_494366.1 1837713 R 451515 CDS YP_494367.1 87162163 3915194 complement(1839307..1839924) 1 NC_007793.1 identified by match to protein family HMM PF01553; match to protein family HMM TIGR00530; 1-acyl-sn-glycerol-3-phosphate acyltransferases 1839924 3915194 SAUSA300_1673 Staphylococcus aureus subsp. aureus USA300_FPR3757 1-acyl-sn-glycerol-3-phosphate acyltransferases YP_494367.1 1839307 R 451515 CDS YP_494368.1 87161296 3914715 1840096..1841370 1 NC_007793.1 identified by match to protein family HMM PF00089; putative serine protease HtrA 1841370 3914715 SAUSA300_1674 Staphylococcus aureus subsp. aureus USA300_FPR3757 putative serine protease HtrA YP_494368.1 1840096 D 451515 CDS YP_494369.1 87162035 3914292 complement(1841464..1842726) 1 NC_007793.1 identified by match to protein family HMM PF00579; match to protein family HMM PF01479; match to protein family HMM TIGR00234; tyrosyl-tRNA synthetase 1842726 tyrS 3914292 tyrS Staphylococcus aureus subsp. aureus USA300_FPR3757 tyrosyl-tRNA synthetase YP_494369.1 1841464 R 451515 CDS YP_494370.1 87161885 3914396 1843108..1844013 1 NC_007793.1 identified by match to protein family HMM PF00912; transglycosylase 1844013 sgtA 3914396 sgtA Staphylococcus aureus subsp. aureus USA300_FPR3757 transglycosylase YP_494370.1 1843108 D 451515 CDS YP_494371.1 87160028 3913349 complement(1844216..1846903) 1 NC_007793.1 identified by match to protein family HMM PF04650; match to protein family HMM PF05031; match to protein family HMM TIGR01167; match to protein family HMM TIGR01168; cell wall surface anchor family protein 1846903 3913349 SAUSA300_1677 Staphylococcus aureus subsp. aureus USA300_FPR3757 cell wall surface anchor family protein YP_494371.1 1844216 R 451515 CDS YP_494372.1 87161068 3912778 complement(1847198..1848865) 1 NC_007793.1 catalyzes the formation of 10-formyltetrahydrofolate from formate and tetrahydrofolate; formate--tetrahydrofolate ligase 1848865 fhs 3912778 fhs Staphylococcus aureus subsp. aureus USA300_FPR3757 formate--tetrahydrofolate ligase YP_494372.1 1847198 R 451515 CDS YP_494373.1 87161635 3913685 complement(1849305..1851011) 1 NC_007793.1 Acs; catalyzes the conversion of acetate and CoA to acetyl-CoA; acetyl-CoA synthetase 1851011 acsA 3913685 acsA Staphylococcus aureus subsp. aureus USA300_FPR3757 acetyl-CoA synthetase YP_494373.1 1849305 R 451515 CDS YP_494374.1 87161539 3914665 1851180..1851812 1 NC_007793.1 acetoin utilization protein AcuA 1851812 acuA 3914665 acuA Staphylococcus aureus subsp. aureus USA300_FPR3757 acetoin utilization protein AcuA YP_494374.1 1851180 D 451515 CDS YP_494375.1 87160179 3913247 1851837..1853006 1 NC_007793.1 identified by match to protein family HMM PF00850; acetoin utilization protein AcuC 1853006 acuC 3913247 acuC Staphylococcus aureus subsp. aureus USA300_FPR3757 acetoin utilization protein AcuC YP_494375.1 1851837 D 451515 CDS YP_494376.1 87160710 3912825 complement(1853104..1854093) 1 NC_007793.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532; match to protein family HMM TIGR01481; catabolite control protein A 1854093 ccpA 3912825 ccpA Staphylococcus aureus subsp. aureus USA300_FPR3757 catabolite control protein A YP_494376.1 1853104 R 451515 CDS YP_494377.1 87161271 3915242 complement(1854633..1855724) 1 NC_007793.1 catalyzes the formation of 3-deoxy-D-aribino-hept-2-ulosonate 7-phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate and the formation of prephenate from chorismate; bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase 1855724 3915242 SAUSA300_1683 Staphylococcus aureus subsp. aureus USA300_FPR3757 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase YP_494377.1 1854633 R 451515 CDS YP_494378.1 87161827 3913798 complement(1856424..1857623) 1 NC_007793.1 hypothetical protein 1857623 3913798 SAUSA300_1684 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494378.1 1856424 R 451515 CDS YP_494379.1 87162360 3914209 complement(1857697..1858188) 1 NC_007793.1 identified by match to protein family HMM PF06103; hypothetical protein 1858188 3914209 SAUSA300_1685 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494379.1 1857697 R 451515 CDS YP_494380.1 87159924 3914970 complement(1858262..1859575) 1 NC_007793.1 Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis; UDP-N-acetylmuramate--L-alanine ligase 1859575 murC 3914970 murC Staphylococcus aureus subsp. aureus USA300_FPR3757 UDP-N-acetylmuramate--L-alanine ligase YP_494380.1 1858262 R 451515 CDS YP_494381.1 87162115 3913109 complement(1859599..1863423) 1 NC_007793.1 identified by match to protein family HMM PF01580; FtsK/SpoIIIE family protein 1863423 3913109 SAUSA300_1687 Staphylococcus aureus subsp. aureus USA300_FPR3757 FtsK/SpoIIIE family protein YP_494381.1 1859599 R 451515 CDS YP_494382.1 87161400 3914088 complement(1863444..1864040) 1 NC_007793.1 identified by match to protein family HMM PF01588; phenylalanyl-tRNA synthetase (beta subunit) 1864040 3914088 SAUSA300_1688 Staphylococcus aureus subsp. aureus USA300_FPR3757 phenylalanyl-tRNA synthetase (beta subunit) YP_494382.1 1863444 R 451515 CDS YP_494383.1 87160963 3915358 complement(1864069..1864926) 1 NC_007793.1 identified by match to protein family HMM PF07285; hypothetical protein 1864926 3915358 SAUSA300_1689 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494383.1 1864069 R 451515 CDS YP_494384.1 87160477 3913332 complement(1865026..1865337) 1 NC_007793.1 identified by match to protein family HMM PF00085; putative thioredoxin 1865337 3913332 SAUSA300_1690 Staphylococcus aureus subsp. aureus USA300_FPR3757 putative thioredoxin YP_494384.1 1865026 R 451515 CDS YP_494385.1 87162362 3914211 complement(1865402..1866478) 1 NC_007793.1 identified by match to protein family HMM PF05343; glutamyl-aminopeptidase 1866478 3914211 SAUSA300_1691 Staphylococcus aureus subsp. aureus USA300_FPR3757 glutamyl-aminopeptidase YP_494385.1 1865402 R 451515 CDS YP_494386.1 87160604 3915223 1866565..1866876 1 NC_007793.1 identified by match to protein family HMM PF03413; hypothetical protein 1866876 3915223 SAUSA300_1692 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494386.1 1866565 D 451515 CDS YP_494387.1 87159947 3913834 complement(1867001..1867843) 1 NC_007793.1 identified by match to protein family HMM PF00753; hypothetical protein 1867843 3913834 SAUSA300_1693 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494387.1 1867001 R 451515 CDS YP_494388.1 87160692 3914186 complement(1868313..1868957) 1 NC_007793.1 tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine; tRNA (guanine-N(7)-)-methyltransferase 1868957 trmB 3914186 trmB Staphylococcus aureus subsp. aureus USA300_FPR3757 tRNA (guanine-N(7)-)-methyltransferase YP_494388.1 1868313 R 451515 CDS YP_494389.1 87160158 3913128 complement(1868972..1869697) 1 NC_007793.1 identified by match to protein family HMM PF01636; hypothetical protein 1869697 3913128 SAUSA300_1695 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494389.1 1868972 R 451515 CDS YP_494390.1 87161996 3914893 complement(1870313..1871161) 1 NC_007793.1 identified by match to protein family HMM PF01063; match to protein family HMM TIGR01121; D-alanine aminotransferase 1871161 dat 3914893 dat Staphylococcus aureus subsp. aureus USA300_FPR3757 D-alanine aminotransferase YP_494390.1 1870313 R 451515 CDS YP_494391.1 87161347 3912864 complement(1871165..1872574) 1 NC_007793.1 divalent metal ion-dependent extracellular dipeptidase; able to hydrolyze a broad range of dipeptides but no tri-, tetra-, or larger oligopeptides; differences in the amino acid specificity of the cleavage site varies between species; similar to succinyl-diaminopimelate desuccinylases; dipeptidase PepV 1872574 3912864 SAUSA300_1697 Staphylococcus aureus subsp. aureus USA300_FPR3757 dipeptidase PepV YP_494391.1 1871165 R 451515 CDS YP_494392.1 87160606 3913267 complement(1873324..1873746) 1 NC_007793.1 hypothetical protein 1873746 3913267 SAUSA300_1698 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494392.1 1873324 R 451515 CDS YP_494393.1 87160516 3914728 complement(1873763..1874458) 1 NC_007793.1 identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093; pseudouridine synthase family 1 protein 1874458 3914728 SAUSA300_1699 Staphylococcus aureus subsp. aureus USA300_FPR3757 pseudouridine synthase family 1 protein YP_494393.1 1873763 R 451515 CDS YP_494394.1 87161924 3914584 complement(1874455..1876116) 1 NC_007793.1 identified by match to protein family HMM PF01943; polysaccharide biosynthesis protein 1876116 3914584 SAUSA300_1700 Staphylococcus aureus subsp. aureus USA300_FPR3757 polysaccharide biosynthesis protein YP_494394.1 1874455 R 451515 CDS YP_494395.1 87161615 3913470 1876523..1877791 1 NC_007793.1 identified by match to protein family HMM PF00890; match to protein family HMM PF01266; match to protein family HMM PF03486; match to protein family HMM PF07992; match to protein family HMM TIGR00275; hypothetical protein 1877791 3913470 SAUSA300_1701 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494395.1 1876523 D 451515 CDS YP_494396.1 87160867 3914139 complement(1877908..1884468) 1 NC_007793.1 identified by match to protein family HMM PF04650; match to protein family HMM PF07564; match to protein family HMM TIGR01167; match to protein family HMM TIGR01168; cell wall surface anchor family protein 1884468 3914139 SAUSA300_1702 Staphylococcus aureus subsp. aureus USA300_FPR3757 cell wall surface anchor family protein YP_494396.1 1877908 R 451515 CDS YP_494397.1 87160768 3913743 complement(1884794..1885105) 1 NC_007793.1 identified by match to protein family HMM PF00581; rhodanese-like domain-containing protein 1885105 3913743 SAUSA300_1703 Staphylococcus aureus subsp. aureus USA300_FPR3757 rhodanese-like domain-containing protein YP_494397.1 1884794 R 451515 CDS YP_494398.1 87160962 3915357 complement(1885127..1887544) 1 NC_007793.1 leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucyl-tRNA synthetase 1887544 leuS 3915357 leuS Staphylococcus aureus subsp. aureus USA300_FPR3757 leucyl-tRNA synthetase YP_494398.1 1885127 R 451515 CDS YP_494399.1 87160224 3913762 complement(1887832..1889013) 1 NC_007793.1 identified by match to protein family HMM PF07690; putative drug transporter 1889013 3913762 SAUSA300_1705 Staphylococcus aureus subsp. aureus USA300_FPR3757 putative drug transporter YP_494399.1 1887832 R 451515 CDS YP_494400.1 87161875 3914563 1889123..1890076 1 NC_007793.1 identified by match to protein family HMM PF04055; match to protein family HMM TIGR01212; hypothetical protein 1890076 3914563 SAUSA300_1706 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494400.1 1889123 D 451515 CDS YP_494401.1 87161375 3914774 1890073..1890636 1 NC_007793.1 identified by match to protein family HMM PF06962; hypothetical protein 1890636 3914774 SAUSA300_1707 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494401.1 1890073 D 451515 CDS YP_494402.1 87161072 3914258 complement(1890756..1891256) 1 NC_007793.1 identified by similarity to GB:AAF22306.1; match to protein family HMM PF01047; match to protein family HMM TIGR01889; accessory regulator Rot 1891256 rot 3914258 rot Staphylococcus aureus subsp. aureus USA300_FPR3757 accessory regulator Rot YP_494402.1 1890756 R 451515 CDS YP_494403.1 87161972 3914484 complement(1892736..1893563) 1 NC_007793.1 identified by match to protein family HMM PF00561; putative lysophospholipase 1893563 3914484 SAUSA300_1710 Staphylococcus aureus subsp. aureus USA300_FPR3757 putative lysophospholipase YP_494403.1 1892736 R 451515 CDS YP_494404.1 87161636 3913686 1893797..1894798 1 NC_007793.1 identified by match to protein family HMM PF01619; proline dehydrogenase 1894798 putA 3913686 putA Staphylococcus aureus subsp. aureus USA300_FPR3757 proline dehydrogenase YP_494404.1 1893797 D 451515 CDS YP_494405.1 87160713 3912828 complement(1894920..1895384) 1 NC_007793.1 RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not; 6,7-dimethyl-8-ribityllumazine synthase 1895384 ribH 3912828 ribH Staphylococcus aureus subsp. aureus USA300_FPR3757 6,7-dimethyl-8-ribityllumazine synthase YP_494405.1 1894920 R 451515 CDS YP_494406.1 87161411 3914099 complement(1895397..1896578) 1 NC_007793.1 identified by match to protein family HMM PF00925; match to protein family HMM PF00926; match to protein family HMM TIGR00505; match to protein family HMM TIGR00506; riboflavin biosynthesis protein 1896578 ribBA 3914099 ribBA Staphylococcus aureus subsp. aureus USA300_FPR3757 riboflavin biosynthesis protein YP_494406.1 1895397 R 451515 CDS YP_494407.1 87161655 3913157 complement(1896589..1897221) 1 NC_007793.1 catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha 1897221 ribE 3913157 ribE Staphylococcus aureus subsp. aureus USA300_FPR3757 riboflavin synthase subunit alpha YP_494407.1 1896589 R 451515 CDS YP_494408.1 87161517 3913191 complement(1897228..1898232) 1 NC_007793.1 identified by match to protein family HMM PF00383; match to protein family HMM PF01872; match to protein family HMM TIGR00326; riboflavin biosynthesis protein 1898232 ribD 3913191 ribD Staphylococcus aureus subsp. aureus USA300_FPR3757 riboflavin biosynthesis protein YP_494408.1 1897228 R 451515 CDS YP_494409.1 87162253 3913171 complement(1898752..1900254) 1 NC_007793.1 hypothetical protein 1900254 3913171 SAUSA300_1716 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494409.1 1898752 R 451515 CDS YP_494410.1 87160392 3912818 1900744..1901091 1 NC_007793.1 identified by match to protein family HMM PF01022; arsenical resistance operon repressor 1901091 arsR 3912818 arsR Staphylococcus aureus subsp. aureus USA300_FPR3757 arsenical resistance operon repressor YP_494410.1 1900744 D 451515 CDS YP_494411.1 87161017 3913933 1901091..1902383 1 NC_007793.1 identified by match to protein family HMM PF02040; match to protein family HMM PF03600; match to protein family HMM TIGR00935; aresenical pump membrane protein 1902383 arsB 3913933 arsB Staphylococcus aureus subsp. aureus USA300_FPR3757 aresenical pump membrane protein YP_494411.1 1901091 D 451515 CDS YP_494412.1 87161126 3914352 1902401..1902796 1 NC_007793.1 catalyzes the reduction of arsenate to arsenite; also can dephosphorylate tyrosine phosphorylated proteins, aryl phosphates, and acyl phosphates; arsenate reductase 1902796 arsC 3914352 arsC Staphylococcus aureus subsp. aureus USA300_FPR3757 arsenate reductase YP_494412.1 1902401 D 451515 CDS YP_494413.1 87161213 3912788 complement(1903091..1903945) 1 NC_007793.1 identified by match to protein family HMM PF01832; hypothetical protein 1903945 3912788 SAUSA300_1720 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494413.1 1903091 R 451515 CDS YP_494414.1 87162033 3914290 complement(1904221..1904445) 1 NC_007793.1 hypothetical protein 1904445 3914290 SAUSA300_1721 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494414.1 1904221 R 451515 CDS YP_494415.1 87160003 3914431 1904566..1905114 1 NC_007793.1 identified by match to protein family HMM PF04542; hypothetical protein 1905114 3914431 SAUSA300_1722 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494415.1 1904566 D 451515 CDS YP_494416.1 87161554 3915169 complement(1905657..1906100) 1 NC_007793.1 hypothetical protein 1906100 3915169 SAUSA300_1723 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494416.1 1905657 R 451515 CDS YP_494417.1 87161141 3913730 1906396..1907031 1 NC_007793.1 identified by match to protein family HMM PF02517; hypothetical protein 1907031 3913730 SAUSA300_1724 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494417.1 1906396 D 451515 CDS YP_494418.1 87160331 3915406 complement(1907471..1908184) 1 NC_007793.1 similar to novel fructose-6-phosphate aldolase from Escherichia coli; enzyme from Methanocaldococcus janaschii shows transaldolase activity; putative translaldolase 1908184 3915406 SAUSA300_1725 Staphylococcus aureus subsp. aureus USA300_FPR3757 putative translaldolase YP_494418.1 1907471 R 451515 CDS YP_494419.1 87162037 3914294 1909364..1909717 1 NC_007793.1 identified by match to protein family HMM PF02537; crcB family protein 1909717 3914294 SAUSA300_1726 Staphylococcus aureus subsp. aureus USA300_FPR3757 crcB family protein YP_494419.1 1909364 D 451515 CDS YP_494420.1 87162311 3913445 complement(1911800..1912633) 1 NC_007793.1 identified by match to protein family HMM PF00248; aldo/keto reductase family oxidoreductase 1912633 3913445 SAUSA300_1728 Staphylococcus aureus subsp. aureus USA300_FPR3757 aldo/keto reductase family oxidoreductase YP_494420.1 1911800 R 451515 CDS YP_494421.1 87161771 3913625 complement(1912845..1913753) 1 NC_007793.1 hypothetical protein 1913753 3913625 SAUSA300_1729 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494421.1 1912845 R 451515 CDS YP_494422.1 87160443 3912946 complement(1913878..1915071) 1 NC_007793.1 catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase 1915071 metK 3912946 metK Staphylococcus aureus subsp. aureus USA300_FPR3757 S-adenosylmethionine synthetase YP_494422.1 1913878 R 451515 CDS YP_494423.1 87162156 3915187 1915442..1917034 1 NC_007793.1 PEP carboxykinase; PEP carboxylase; PEPCK; catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using ATP; phosphoenolpyruvate carboxykinase 1917034 pckA 3915187 pckA Staphylococcus aureus subsp. aureus USA300_FPR3757 phosphoenolpyruvate carboxykinase YP_494423.1 1915442 D 451515 CDS YP_494424.1 87161023 3913939 complement(1917170..1917571) 1 NC_007793.1 putative transposase 1917571 3913939 SAUSA300_1732 Staphylococcus aureus subsp. aureus USA300_FPR3757 putative transposase YP_494424.1 1917170 R 451515 CDS YP_494425.1 87160510 3914722 complement(1918030..1918776) 1 NC_007793.1 hypothetical protein 1918776 3914722 SAUSA300_1733 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494425.1 1918030 R 451515 CDS YP_494426.1 87161491 3914233 complement(1918781..1919260) 1 NC_007793.1 identified by match to protein family HMM PF00293; match to protein family HMM TIGR02705; hypothetical protein 1919260 3914233 SAUSA300_1734 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494426.1 1918781 R 451515 CDS YP_494427.1 87160573 3914999 1919320..1919577 1 NC_007793.1 identified by match to protein family HMM PF01809; match to protein family HMM TIGR00278; hypothetical protein 1919577 3914999 SAUSA300_1736 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494427.1 1919320 D 451515 CDS YP_494428.1 87162143 3914690 complement(1919574..1920575) 1 NC_007793.1 identified by match to protein family HMM TIGR01928; O-succinylbenzoic acid synthetase 1920575 menC 3914690 menC Staphylococcus aureus subsp. aureus USA300_FPR3757 O-succinylbenzoic acid synthetase YP_494428.1 1919574 R 451515 CDS YP_494429.1 87161579 3913648 complement(1920580..1922058) 1 NC_007793.1 identified by match to protein family HMM PF00501; match to protein family HMM TIGR01923; O-succinylbenzoate-CoA ligase 1922058 menE 3913648 menE Staphylococcus aureus subsp. aureus USA300_FPR3757 O-succinylbenzoate-CoA ligase YP_494429.1 1920580 R 451515 CDS YP_494430.1 87161784 3913638 complement(1922217..1922672) 1 NC_007793.1 putative lipoprotein 1922672 3913638 SAUSA300_1738 Staphylococcus aureus subsp. aureus USA300_FPR3757 putative lipoprotein YP_494430.1 1922217 R 451515 CDS YP_494431.1 87161148 3914493 1922975..1923625 1 NC_007793.1 identified by match to protein family HMM PF05901; hypothetical protein 1923625 3914493 SAUSA300_1739 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494431.1 1922975 D 451515 CDS YP_494432.1 87160435 3912938 1923706..1924701 1 NC_007793.1 hypothetical protein 1924701 3912938 SAUSA300_1740 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494432.1 1923706 D 451515 CDS YP_494433.1 87161836 3913807 1924777..1924932 1 NC_007793.1 putative lipoprotein 1924932 3913807 SAUSA300_1741 Staphylococcus aureus subsp. aureus USA300_FPR3757 putative lipoprotein YP_494433.1 1924777 D 451515 CDS YP_494434.1 87160056 3912909 1924933..1925403 1 NC_007793.1 hypothetical protein 1925403 3912909 SAUSA300_1742 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494434.1 1924933 D 451515 CDS YP_494435.1 87162068 3914247 1925444..1925788 1 NC_007793.1 hypothetical protein 1925788 3914247 SAUSA300_1743 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494435.1 1925444 D 451515 CDS YP_494436.1 87162206 3914849 1925886..1926437 1 NC_007793.1 hypothetical protein 1926437 3914849 SAUSA300_1744 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494436.1 1925886 D 451515 CDS YP_494437.1 87161657 3913159 complement(1926655..1927296) 1 NC_007793.1 identified by match to protein family HMM PF06114; hypothetical protein 1927296 3913159 SAUSA300_1745 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494437.1 1926655 R 451515 CDS YP_494438.1 87162173 3915204 complement(1927410..1927595) 1 NC_007793.1 hypothetical protein 1927595 3915204 SAUSA300_1746 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494438.1 1927410 R 451515 CDS YP_494439.1 87161609 3913464 complement(1927784..1928167) 1 NC_007793.1 hypothetical protein 1928167 3913464 SAUSA300_1747 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494439.1 1927784 R 451515 CDS YP_494440.1 87162061 3914240 complement(1929784..1930161) 1 NC_007793.1 identified by match to protein family HMM PF07252; hypothetical protein 1930161 3914240 SAUSA300_1749 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494440.1 1929784 R 451515 CDS YP_494441.1 87162266 3913184 complement(1930682..1934794) 1 NC_007793.1 hypothetical protein 1934794 3913184 SAUSA300_1750 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494441.1 1930682 R 451515 CDS YP_494442.1 87161451 3914124 complement(1935644..1936843) 1 NC_007793.1 identified by match to protein family HMM PF01420; type I restriction-modification enzyme, S subunit 1936843 hsdS 3914124 hsdS Staphylococcus aureus subsp. aureus USA300_FPR3757 type I restriction-modification enzyme, S subunit YP_494442.1 1935644 R 451515 CDS YP_494443.1 87161919 3913010 complement(1936836..1938575) 1 NC_007793.1 identified by match to protein family HMM PF02384; match to protein family HMM TIGR00497; type I restriction-modification system, M subunit 1938575 hsdM 3913010 hsdM Staphylococcus aureus subsp. aureus USA300_FPR3757 type I restriction-modification system, M subunit YP_494443.1 1936836 R 451515 CDS YP_494444.1 87161318 3914815 complement(1938755..1939474) 1 NC_007793.1 identified by match to protein family HMM PF00089; serine protease SplF 1939474 splF 3914815 splF Staphylococcus aureus subsp. aureus USA300_FPR3757 serine protease SplF YP_494444.1 1938755 R 451515 CDS YP_494445.1 87161916 3913007 complement(1939625..1940341) 1 NC_007793.1 identified by match to protein family HMM PF00089; serine protease SplE 1940341 splE 3913007 splE Staphylococcus aureus subsp. aureus USA300_FPR3757 serine protease SplE YP_494445.1 1939625 R 451515 CDS YP_494446.1 87160514 3914726 complement(1940499..1941218) 1 NC_007793.1 identified by match to protein family HMM PF00089; serine protease SplD 1941218 splD 3914726 splD Staphylococcus aureus subsp. aureus USA300_FPR3757 serine protease SplD YP_494446.1 1940499 R 451515 CDS YP_494447.1 87160903 3915154 complement(1941339..1942058) 1 NC_007793.1 identified by match to protein family HMM PF00089; serine protease SplC 1942058 splC 3915154 splC Staphylococcus aureus subsp. aureus USA300_FPR3757 serine protease SplC YP_494447.1 1941339 R 451515 CDS YP_494448.1 87161649 3913151 complement(1942116..1942838) 1 NC_007793.1 identified by match to protein family HMM PF00089; serine protease SplB 1942838 splB 3913151 splB Staphylococcus aureus subsp. aureus USA300_FPR3757 serine protease SplB YP_494448.1 1942116 R 451515 CDS YP_494449.1 87161397 3914167 complement(1942963..1943670) 1 NC_007793.1 identified by match to protein family HMM PF00089; serine protease SplA 1943670 splA 3914167 splA Staphylococcus aureus subsp. aureus USA300_FPR3757 serine protease SplA YP_494449.1 1942963 R 451515 CDS YP_494450.1 87162106 3913100 1944634..1945200 1 NC_007793.1 hypothetical protein 1945200 3913100 SAUSA300_1759 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494450.1 1944634 D 451515 CDS YP_494451.1 87160206 3913079 complement(1945674..1946372) 1 NC_007793.1 lantibiotic epidermin immunity protein F 1946372 epiG 3913079 epiG Staphylococcus aureus subsp. aureus USA300_FPR3757 lantibiotic epidermin immunity protein F YP_494451.1 1945674 R 451515 CDS YP_494452.1 87160915 3915166 complement(1946369..1947130) 1 NC_007793.1 lantibiotic epidermin immunity protein F 1947130 epiE 3915166 epiE Staphylococcus aureus subsp. aureus USA300_FPR3757 lantibiotic epidermin immunity protein F YP_494452.1 1946369 R 451515 CDS YP_494453.1 87160299 3914535 complement(1947127..1947819) 1 NC_007793.1 identified by match to protein family HMM PF00005; lantibiotic epidermin immunity protein F 1947819 epiF 3914535 epiF Staphylococcus aureus subsp. aureus USA300_FPR3757 lantibiotic epidermin immunity protein F YP_494453.1 1947127 R 451515 CDS YP_494454.1 87162241 3914866 complement(1947842..1949215) 1 NC_007793.1 identified by match to protein family HMM PF00082; lantibiotic epidermin leader peptide processing serine protease EpiP 1949215 epiP 3914866 epiP Staphylococcus aureus subsp. aureus USA300_FPR3757 lantibiotic epidermin leader peptide processing serine protease EpiP YP_494454.1 1947842 R 451515 CDS YP_494455.1 87161783 3913637 complement(1949225..1949743) 1 NC_007793.1 identified by match to protein family HMM PF02441; lantibiotic epidermin biosynthesis protein EpiD 1949743 epiD 3913637 epiD Staphylococcus aureus subsp. aureus USA300_FPR3757 lantibiotic epidermin biosynthesis protein EpiD YP_494455.1 1949225 R 451515 CDS YP_494456.1 87162345 3913829 complement(1949759..1951003) 1 NC_007793.1 identified by match to protein family HMM PF05147; lantibiotic epidermin biosynthesis protein EpiC 1951003 epiC 3913829 epiC Staphylococcus aureus subsp. aureus USA300_FPR3757 lantibiotic epidermin biosynthesis protein EpiC YP_494456.1 1949759 R 451515 CDS YP_494457.1 87161798 3914041 complement(1950996..1953989) 1 NC_007793.1 identified by match to protein family HMM PF04737; match to protein family HMM PF04738; lantibiotic epidermin biosynthesis protein EpiB 1953989 epiB 3914041 epiB Staphylococcus aureus subsp. aureus USA300_FPR3757 lantibiotic epidermin biosynthesis protein EpiB YP_494457.1 1950996 R 451515 CDS YP_494458.1 87160527 3914739 complement(1954054..1954197) 1 NC_007793.1 identified by match to protein family HMM PF02052; lantibiotic epidermin biosynthesis protein EpiA 1954197 epiA 3914739 epiA Staphylococcus aureus subsp. aureus USA300_FPR3757 lantibiotic epidermin biosynthesis protein EpiA YP_494458.1 1954054 R 451515 CDS YP_494459.1 87160002 3914430 complement(1955319..1956302) 1 NC_007793.1 identified by match to protein family HMM PF07968; match to protein family HMM TIGR01002; leukotoxin LukD 1956302 lukD 3914430 lukD Staphylococcus aureus subsp. aureus USA300_FPR3757 leukotoxin LukD YP_494459.1 1955319 R 451515 CDS YP_494460.1 87162036 3914293 complement(1956304..1957239) 1 NC_007793.1 identified by match to protein family HMM PF07968; match to protein family HMM TIGR01002; leukotoxin LukE 1957239 lukE 3914293 lukE Staphylococcus aureus subsp. aureus USA300_FPR3757 leukotoxin LukE YP_494460.1 1956304 R 451515 CDS YP_494461.1 87162175 3913872 1958122..1958577 1 NC_007793.1 hypothetical protein 1958577 3913872 SAUSA300_1770 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494461.1 1958122 D 451515 CDS YP_494462.1 87160738 3913439 1958590..1959231 1 NC_007793.1 hypothetical protein 1959231 3913439 SAUSA300_1771 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494462.1 1958590 D 451515 CDS YP_494463.1 87161320 3914817 complement(1961834..1962388) 1 NC_007793.1 identified by match to protein family HMM PF06821; hypothetical protein 1962388 3914817 SAUSA300_1780 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494463.1 1961834 R 451515 CDS YP_494464.1 87160671 3915048 complement(1962711..1964111) 1 NC_007793.1 catalyzes the formation of protoporphyrin IX from protoporphyrinogen IX; protoporphyrinogen oxidase 1964111 hemG 3915048 hemG Staphylococcus aureus subsp. aureus USA300_FPR3757 protoporphyrinogen oxidase YP_494464.1 1962711 R 451515 CDS YP_494465.1 87161480 3914222 complement(1964135..1965058) 1 NC_007793.1 protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic; ferrochelatase 1965058 hemH 3914222 hemH Staphylococcus aureus subsp. aureus USA300_FPR3757 ferrochelatase YP_494465.1 1964135 R 451515 CDS YP_494466.1 87162428 3915024 complement(1965116..1966153) 1 NC_007793.1 catalyzes the formation of coproporphyrinogen from uroporphyrinogen III; uroporphyrinogen decarboxylase 1966153 hemE 3915024 hemE Staphylococcus aureus subsp. aureus USA300_FPR3757 uroporphyrinogen decarboxylase YP_494466.1 1965116 R 451515 CDS YP_494467.1 87160017 3912928 1966416..1966919 1 NC_007793.1 signal transduction protein TRAP 1966919 3912928 SAUSA300_1784 Staphylococcus aureus subsp. aureus USA300_FPR3757 signal transduction protein TRAP YP_494467.1 1966416 D 451515 CDS YP_494468.1 87160857 3913403 complement(1967043..1968266) 1 NC_007793.1 identified by match to protein family HMM PF05975; putative ABC transporter protein EcsB 1968266 3913403 SAUSA300_1785 Staphylococcus aureus subsp. aureus USA300_FPR3757 putative ABC transporter protein EcsB YP_494468.1 1967043 R 451515 CDS YP_494469.1 87161760 3913905 complement(1968259..1968999) 1 NC_007793.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein EcsA 1968999 3913905 SAUSA300_1786 Staphylococcus aureus subsp. aureus USA300_FPR3757 ABC transporter ATP-binding protein EcsA YP_494469.1 1968259 R 451515 CDS YP_494470.1 87161457 3914048 1969133..1969555 1 NC_007793.1 identified by match to protein family HMM PF01230; HIT family protein 1969555 3914048 SAUSA300_1787 Staphylococcus aureus subsp. aureus USA300_FPR3757 HIT family protein YP_494470.1 1969133 D 451515 CDS YP_494471.1 87162045 3914321 1969697..1970062 1 NC_007793.1 hypothetical protein 1970062 3914321 SAUSA300_1788 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494471.1 1969697 D 451515 CDS YP_494472.1 87160522 3914734 1970795..1971352 1 NC_007793.1 hypothetical protein 1971352 3914734 SAUSA300_1789 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494472.1 1970795 D 451515 CDS YP_494473.1 87162356 3914205 1971557..1972519 1 NC_007793.1 identified by match to protein family HMM PF00639; foldase protein PrsA 1972519 prsA 3914205 prsA Staphylococcus aureus subsp. aureus USA300_FPR3757 foldase protein PrsA YP_494473.1 1971557 D 451515 CDS YP_494474.1 87161772 3913626 complement(1972640..1973581) 1 NC_007793.1 catalyzes the exonucleic cleavage of mRNA yielding nucleioside 5'-phosphates; 3'-5' exoribonuclease YhaM 1973581 cbf1 3913626 cbf1 Staphylococcus aureus subsp. aureus USA300_FPR3757 3'-5' exoribonuclease YhaM YP_494474.1 1972640 R 451515 CDS YP_494475.1 87160539 3914019 complement(1973578..1976514) 1 NC_007793.1 hypothetical protein 1976514 3914019 SAUSA300_1792 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494475.1 1973578 R 451515 CDS YP_494476.1 87159960 3913847 complement(1976504..1977700) 1 NC_007793.1 identified by match to protein family HMM PF00149; hypothetical protein 1977700 3913847 SAUSA300_1793 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494476.1 1976504 R 451515 CDS YP_494477.1 87161999 3915370 complement(1977991..1978089) 1 NC_007793.1 hypothetical protein 1978089 3915370 SAUSA300_1794 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494477.1 1977991 R 451515 CDS YP_494478.1 87161419 3914068 complement(1978472..1978816) 1 NC_007793.1 identified by match to protein family HMM PF06133; hypothetical protein 1978816 3914068 SAUSA300_1795 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494478.1 1978472 R 451515 CDS YP_494479.1 87160219 3913757 complement(1978885..1980009) 1 NC_007793.1 identified by match to protein family HMM PF04286; hypothetical protein 1980009 3913757 SAUSA300_1796 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494479.1 1978885 R 451515 CDS YP_494480.1 87162378 3913531 complement(1980188..1980652) 1 NC_007793.1 hypothetical protein 1980652 3913531 SAUSA300_1797 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494480.1 1980188 R 451515 CDS YP_494481.1 87161726 3913012 complement(1981008..1981631) 1 NC_007793.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00196; DNA-binding response regulator 1981631 3913012 SAUSA300_1798 Staphylococcus aureus subsp. aureus USA300_FPR3757 DNA-binding response regulator YP_494481.1 1981008 R 451515 CDS YP_494482.1 87161252 3913861 complement(1981653..1982765) 1 NC_007793.1 identified by match to protein family HMM PF02518; match to protein family HMM PF07730; putative sensor histidine kinase 1982765 3913861 SAUSA300_1799 Staphylococcus aureus subsp. aureus USA300_FPR3757 putative sensor histidine kinase YP_494482.1 1981653 R 451515 CDS YP_494483.1 87160591 3915210 1982928..1983749 1 NC_007793.1 identified by match to protein family HMM PF00849; ribosomal large subunit pseudouridine synthase D 1983749 3915210 SAUSA300_1800 Staphylococcus aureus subsp. aureus USA300_FPR3757 ribosomal large subunit pseudouridine synthase D YP_494483.1 1982928 D 451515 CDS YP_494484.1 87160455 3913056 complement(1984212..1985597) 1 NC_007793.1 class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle; fumarate hydratase 1985597 fumC 3913056 fumC Staphylococcus aureus subsp. aureus USA300_FPR3757 fumarate hydratase YP_494484.1 1984212 R 451515 CDS YP_494485.1 87160439 3912942 complement(1985793..1986188) 1 NC_007793.1 hypothetical protein 1986188 3912942 SAUSA300_1802 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494485.1 1985793 R 451515 CDS YP_494486.1 87161194 3914905 complement(1986965..1987117) 1 NC_007793.1 hypothetical protein 1987117 3914905 SAUSA300_1803 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494486.1 1986965 R 451515 CDS YP_494487.1 87160632 3915067 complement(1987142..1987741) 1 NC_007793.1 hypothetical protein 1987741 3915067 SAUSA300_1804 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494487.1 1987142 R 451515 CDS YP_494488.1 87160191 3913259 complement(1987900..1988370) 1 NC_007793.1 identified by match to protein family HMM PF00588; match to protein family HMM TIGR00185; RNA methyltransferase 1988370 3913259 SAUSA300_1805 Staphylococcus aureus subsp. aureus USA300_FPR3757 RNA methyltransferase YP_494488.1 1987900 R 451515 CDS YP_494489.1 87160144 3913114 complement(1988375..1989502) 1 NC_007793.1 identified by match to protein family HMM PF00037; match to protein family HMM TIGR00276; putative iron-sulfur cluster-binding protein 1989502 3913114 SAUSA300_1806 Staphylococcus aureus subsp. aureus USA300_FPR3757 putative iron-sulfur cluster-binding protein YP_494489.1 1988375 R 451515 CDS YP_494490.1 87162212 3914855 complement(1989653..1990381) 1 NC_007793.1 identified by match to protein family HMM PF00005; amino acid ABC transporter ATP-binding protein 1990381 3914855 SAUSA300_1807 Staphylococcus aureus subsp. aureus USA300_FPR3757 amino acid ABC transporter ATP-binding protein YP_494490.1 1989653 R 451515 CDS YP_494491.1 87161641 3913691 complement(1990368..1991825) 1 NC_007793.1 identified by match to protein family HMM PF00497; match to protein family HMM PF00528; match to protein family HMM TIGR01726; amino acid ABC transporter permease/substrate-binding protein 1991825 3913691 SAUSA300_1808 Staphylococcus aureus subsp. aureus USA300_FPR3757 amino acid ABC transporter permease/substrate-binding protein YP_494491.1 1990368 R 451515 CDS YP_494492.1 87161453 3914126 complement(1992083..1993144) 1 NC_007793.1 identified by match to protein family HMM PF02378; hypothetical protein 1993144 3914126 SAUSA300_1809 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494492.1 1992083 R 451515 CDS YP_494493.1 87161378 3914777 1993601..1994956 1 NC_007793.1 identified by match to protein family HMM PF01610; IS1181, transposase 1994956 3914777 SAUSA300_1810 Staphylococcus aureus subsp. aureus USA300_FPR3757 IS1181, transposase YP_494493.1 1993601 D 451515 CDS YP_494494.1 87160351 3915126 complement(2003464..2003910) 1 NC_007793.1 identified by match to protein family HMM PF01475; FUR family transcriptional regulator 2003910 3915126 SAUSA300_1842 Staphylococcus aureus subsp. aureus USA300_FPR3757 FUR family transcriptional regulator YP_494494.1 2003464 R 451515 CDS YP_494495.1 87160923 3914361 complement(2004007..2004957) 1 NC_007793.1 identified by match to protein family HMM PF00389; match to protein family HMM PF02826; D-isomer specific 2-hydroxyacid dehydrogenase family protein 2004957 3914361 SAUSA300_1843 Staphylococcus aureus subsp. aureus USA300_FPR3757 D-isomer specific 2-hydroxyacid dehydrogenase family protein YP_494495.1 2004007 R 451515 CDS YP_494496.1 87161039 3912884 complement(2004963..2005418) 1 NC_007793.1 identified by match to protein family HMM PF00578; bacterioferritin comigratory protein 2005418 3912884 SAUSA300_1844 Staphylococcus aureus subsp. aureus USA300_FPR3757 bacterioferritin comigratory protein YP_494496.1 2004963 R 451515 CDS YP_494497.1 87161589 3913658 2005499..2006788 1 NC_007793.1 converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate; glutamate-1-semialdehyde aminotransferase 2006788 hemL 3913658 hemL Staphylococcus aureus subsp. aureus USA300_FPR3757 glutamate-1-semialdehyde aminotransferase YP_494497.1 2005499 D 451515 CDS YP_494498.1 87161969 3914481 2007132..2008175 1 NC_007793.1 identified by match to protein family HMM PF06081; hypothetical protein 2008175 3914481 SAUSA300_1846 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494498.1 2007132 D 451515 CDS YP_494499.1 87159934 3914980 complement(2008366..2010102) 1 NC_007793.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664; hypothetical protein 2010102 3914980 SAUSA300_1847 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494499.1 2008366 R 451515 CDS YP_494500.1 87160108 3913371 complement(2010393..2010935) 1 NC_007793.1 identified by match to protein family HMM PF04167; hypothetical protein 2010935 3913371 SAUSA300_1848 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494500.1 2010393 R 451515 CDS YP_494501.1 87161368 3914767 complement(2011237..2012274) 1 NC_007793.1 identified by match to protein family HMM PF00633; match to protein family HMM PF00730; match to protein family HMM TIGR01084; A/G-specific adenine glycosylase 2012274 mutY 3914767 mutY Staphylococcus aureus subsp. aureus USA300_FPR3757 A/G-specific adenine glycosylase YP_494501.1 2011237 R 451515 CDS YP_494502.1 87160974 3915369 2012426..2013403 1 NC_007793.1 identified by match to protein family HMM PF04307; hypothetical protein 2013403 3915369 SAUSA300_1850 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494502.1 2012426 D 451515 CDS YP_494503.1 87160274 3913676 complement(2013664..2014500) 1 NC_007793.1 hypothetical protein 2014500 3913676 SAUSA300_1851 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494503.1 2013664 R 451515 CDS YP_494504.1 87162425 3915272 complement(2014509..2016026) 1 NC_007793.1 putative ABC transporter ATP-binding protein 2016026 3915272 SAUSA300_1852 Staphylococcus aureus subsp. aureus USA300_FPR3757 putative ABC transporter ATP-binding protein YP_494504.1 2014509 R 451515 CDS YP_494505.1 87161103 3914309 complement(2016041..2016355) 1 NC_007793.1 hypothetical protein 2016355 3914309 SAUSA300_1853 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494505.1 2016041 R 451515 CDS YP_494506.1 87160543 3914023 complement(2016333..2017151) 1 NC_007793.1 binds RecA and inhibits RecA-mediated DNA strand exchange and ATP hydrolysis and coprotease activities; recombination regulator RecX 2017151 recX 3914023 recX Staphylococcus aureus subsp. aureus USA300_FPR3757 recombination regulator RecX YP_494506.1 2016333 R 451515 CDS YP_494507.1 87160167 3914519 complement(2017412..2018221) 1 NC_007793.1 monofunctional; catalyzes the elongation of glycan strands in cell wall biosynthesis; glycosyltransferase 2018221 sgtB 3914519 sgtB Staphylococcus aureus subsp. aureus USA300_FPR3757 glycosyltransferase YP_494507.1 2017412 R 451515 CDS YP_494508.1 87161662 3913164 complement(2018562..2019077) 1 NC_007793.1 identified by match to protein family HMM PF01965; match to protein family HMM TIGR01382; hypothetical protein 2019077 3913164 SAUSA300_1856 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494508.1 2018562 R 451515 CDS YP_494509.1 87161381 3914151 complement(2019208..2019369) 1 NC_007793.1 hypothetical protein 2019369 3914151 SAUSA300_1857 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494509.1 2019208 R 451515 CDS YP_494510.1 87161384 3914154 2019593..2020744 1 NC_007793.1 identified by match to protein family HMM PF04055; hypothetical protein 2020744 3914154 SAUSA300_1858 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494510.1 2019593 D 451515 CDS YP_494511.1 87161279 3915250 complement(2021004..2021534) 1 NC_007793.1 identified by match to protein family HMM PF03061; hypothetical protein 2021534 3915250 SAUSA300_1859 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494511.1 2021004 R 451515 CDS YP_494512.1 87161826 3913797 complement(2021624..2022871) 1 NC_007793.1 identified by match to protein family HMM PF02073; aminopeptidase PepS 2022871 pepS 3913797 pepS Staphylococcus aureus subsp. aureus USA300_FPR3757 aminopeptidase PepS YP_494512.1 2021624 R 451515 CDS YP_494513.1 87160208 3913081 complement(2022883..2023083) 1 NC_007793.1 identified by match to protein family HMM PF06569; hypothetical protein 2023083 3913081 SAUSA300_1861 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494513.1 2022883 R 451515 CDS YP_494514.1 87160746 3913409 2023230..2023694 1 NC_007793.1 identified by match to protein family HMM PF01451; hypothetical protein 2023694 3913409 SAUSA300_1862 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494514.1 2023230 D 451515 CDS YP_494515.1 87162103 3913097 2023701..2023976 1 NC_007793.1 hypothetical protein 2023976 3913097 SAUSA300_1863 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494515.1 2023701 D 451515 CDS YP_494516.1 87160245 3915136 2024254..2025471 1 NC_007793.1 identified by match to protein family HMM PF03631; match to protein family HMM TIGR00765; hypothetical protein 2025471 3915136 SAUSA300_1864 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494516.1 2024254 D 451515 CDS YP_494517.1 87161005 3913571 complement(2025587..2026216) 1 NC_007793.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00196; DNA-binding response regulator 2026216 vraR 3913571 vraR Staphylococcus aureus subsp. aureus USA300_FPR3757 DNA-binding response regulator YP_494517.1 2025587 R 451515 CDS YP_494518.1 87161724 3915290 complement(2026206..2027249) 1 NC_007793.1 identified by match to protein family HMM PF02518; match to protein family HMM PF07730; two-component sensor histidine kinase 2027249 vraS 3915290 vraS Staphylococcus aureus subsp. aureus USA300_FPR3757 two-component sensor histidine kinase YP_494518.1 2026206 R 451515 CDS YP_494519.1 87161567 3915182 complement(2027246..2027947) 1 NC_007793.1 hypothetical protein 2027947 3915182 SAUSA300_1867 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494519.1 2027246 R 451515 CDS YP_494520.1 87162283 3915323 complement(2027962..2028348) 1 NC_007793.1 hypothetical protein 2028348 3915323 SAUSA300_1868 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494520.1 2027962 R 451515 CDS YP_494521.1 87160256 3915147 complement(2028565..2029323) 1 NC_007793.1 catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mn; methionine aminopeptidase 2029323 map 3915147 map Staphylococcus aureus subsp. aureus USA300_FPR3757 methionine aminopeptidase YP_494521.1 2028565 R 451515 CDS YP_494522.1 87160818 3913050 2029851..2030837 1 NC_007793.1 hypothetical protein 2030837 3913050 SAUSA300_1870 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494522.1 2029851 D 451515 CDS YP_494523.1 87161401 3914089 complement(2031386..2031799) 1 NC_007793.1 hypothetical protein 2031799 3914089 SAUSA300_1871 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494523.1 2031386 R 451515 CDS YP_494524.1 87161962 3914474 complement(2032024..2032755) 1 NC_007793.1 identified by match to protein family HMM PF07685; hypothetical protein 2032755 3914474 SAUSA300_1872 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494524.1 2032024 R 451515 CDS YP_494525.1 87159963 3913850 complement(2032757..2034070) 1 NC_007793.1 Mur ligase family protein 2034070 3913850 SAUSA300_1873 Staphylococcus aureus subsp. aureus USA300_FPR3757 Mur ligase family protein YP_494525.1 2032757 R 451515 CDS YP_494526.1 87161737 3913023 2034362..2034862 1 NC_007793.1 identified by match to protein family HMM PF00210; ferritins family protein 2034862 3913023 SAUSA300_1874 Staphylococcus aureus subsp. aureus USA300_FPR3757 ferritins family protein YP_494526.1 2034362 D 451515 CDS YP_494527.1 87160447 3912950 2035251..2035805 1 NC_007793.1 identified by match to protein family HMM PF00929; exonuclease 2035805 3912950 SAUSA300_1875 Staphylococcus aureus subsp. aureus USA300_FPR3757 exonuclease YP_494527.1 2035251 D 451515 CDS YP_494528.1 87162181 3913878 complement(2035873..2036913) 1 NC_007793.1 involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function; DNA polymerase IV 2036913 3913878 SAUSA300_1876 Staphylococcus aureus subsp. aureus USA300_FPR3757 DNA polymerase IV YP_494528.1 2035873 R 451515 CDS YP_494529.1 87161576 3913645 complement(2037190..2037720) 1 NC_007793.1 hypothetical protein 2037720 3913645 SAUSA300_1877 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494529.1 2037190 R 451515 CDS YP_494530.1 87160330 3915405 complement(2037890..2039251) 1 NC_007793.1 identified by match to protein family HMM PF02475; match to protein family HMM PF05958; match to protein family HMM TIGR00479; RNA methyltransferase 2039251 rumA 3915405 rumA Staphylococcus aureus subsp. aureus USA300_FPR3757 RNA methyltransferase YP_494530.1 2037890 R 451515 CDS YP_494531.1 87160862 3914133 complement(2039332..2040279) 1 NC_007793.1 similar to YegS from E. coli; putative lipid kinase 2040279 3914133 SAUSA300_1879 Staphylococcus aureus subsp. aureus USA300_FPR3757 putative lipid kinase YP_494531.1 2039332 R 451515 CDS YP_494532.1 87162372 3913525 complement(2041048..2042475) 1 NC_007793.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit B 2042475 gatB 3913525 gatB Staphylococcus aureus subsp. aureus USA300_FPR3757 aspartyl/glutamyl-tRNA amidotransferase subunit B YP_494532.1 2041048 R 451515 CDS YP_494533.1 87161785 3914028 complement(2042488..2043945) 1 NC_007793.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit A 2043945 gatA 3914028 gatA Staphylococcus aureus subsp. aureus USA300_FPR3757 aspartyl/glutamyl-tRNA amidotransferase subunit A YP_494533.1 2042488 R 451515 CDS YP_494534.1 87160559 3913514 complement(2043947..2044249) 1 NC_007793.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; some Mycoplasma proteins contain an N-terminal fusion to an unknown domain; aspartyl/glutamyl-tRNA amidotransferase subunit C 2044249 gatC 3913514 gatC Staphylococcus aureus subsp. aureus USA300_FPR3757 aspartyl/glutamyl-tRNA amidotransferase subunit C YP_494534.1 2043947 R 451515 CDS YP_494535.1 87160016 3912927 2044616..2046154 1 NC_007793.1 identified by match to protein family HMM PF00474; match to protein family HMM TIGR00813; match to protein family HMM TIGR02121; high affinity proline permease 2046154 putP 3912927 putP Staphylococcus aureus subsp. aureus USA300_FPR3757 high affinity proline permease YP_494535.1 2044616 D 451515 CDS YP_494536.1 87160280 3913487 complement(2046243..2047442) 1 NC_007793.1 identified by match to protein family HMM PF07537; CamS sex pheromone cAM373 2047442 3913487 SAUSA300_1884 Staphylococcus aureus subsp. aureus USA300_FPR3757 CamS sex pheromone cAM373 YP_494536.1 2046243 R 451515 CDS YP_494537.1 87161485 3914227 complement(2047455..2049458) 1 NC_007793.1 identified by match to protein family HMM PF00533; match to protein family HMM PF01653; match to protein family HMM PF03119; match to protein family HMM PF03120; match to protein family HMM TIGR00575; DNA ligase 2049458 ligA 3914227 ligA Staphylococcus aureus subsp. aureus USA300_FPR3757 DNA ligase YP_494537.1 2047455 R 451515 CDS YP_494538.1 87160459 3913060 complement(2049462..2051654) 1 NC_007793.1 identified by match to protein family HMM PF00580; match to protein family HMM TIGR01073; ATP-dependent DNA helicase, PcrA 2051654 pcrA 3913060 pcrA Staphylococcus aureus subsp. aureus USA300_FPR3757 ATP-dependent DNA helicase, PcrA YP_494538.1 2049462 R 451515 CDS YP_494539.1 87161021 3913937 complement(2051651..2052343) 1 NC_007793.1 PcrB-like protein; GGGP synthase; member of prenyltransferases that transfer isoprenoid groups to nonisoprenoid acceptors; functions in form GGGP from glycerol-1-phosphate (G-1-P) and geranylgeranyl pyrophosphate (GGPP); important in lipid metabolism and especially important as the ether linkages in archaea are different than those in bacteria; GGGP synthase lies at the branch point for membrane lipid biosynthesis; cytosolic; T acidophilum protein acts as a homodimer while M thermoautotrophicum protein has been reported to function as a pentamer; geranylgeranylglyceryl phosphate synthase-like protein 2052343 pcrB 3913937 pcrB Staphylococcus aureus subsp. aureus USA300_FPR3757 geranylgeranylglyceryl phosphate synthase-like protein YP_494539.1 2051651 R 451515 CDS YP_494540.1 87161929 3914589 complement(2052515..2052817) 1 NC_007793.1 identified by match to protein family HMM PF01371; match to protein family HMM TIGR02531; hypothetical protein 2052817 3914589 SAUSA300_1888 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494540.1 2052515 R 451515 CDS YP_494541.1 87159911 3914957 complement(2052926..2054221) 1 NC_007793.1 Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; adenylosuccinate lyase 2054221 purB 3914957 purB Staphylococcus aureus subsp. aureus USA300_FPR3757 adenylosuccinate lyase YP_494541.1 2052926 R 451515 CDS YP_494542.1 87160198 3913266 2055082..2056248 1 NC_007793.1 identified by match to protein family HMM PF05543; staphopain A 2056248 3913266 SAUSA300_1890 Staphylococcus aureus subsp. aureus USA300_FPR3757 staphopain A YP_494542.1 2055082 D 451515 CDS YP_494543.1 87160766 3913741 complement(2056897..2057070) 1 NC_007793.1 hypothetical protein 2057070 3913741 SAUSA300_1891 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494543.1 2056897 R 451515 CDS YP_494544.1 87161584 3913653 complement(2057051..2057653) 1 NC_007793.1 hypothetical protein 2057653 3913653 SAUSA300_1892 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494544.1 2057051 R 451515 CDS YP_494545.1 87162145 3914692 complement(2057924..2058745) 1 NC_007793.1 catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers; NAD synthetase 2058745 nadE 3914692 nadE Staphylococcus aureus subsp. aureus USA300_FPR3757 NAD synthetase YP_494545.1 2057924 R 451515 CDS YP_494546.1 87161265 3915236 complement(2058738..2060207) 1 NC_007793.1 catalyzes the formation of 5-phospho-alpha-D-ribose 1-diphosphate and nicotinate from nicotinate D-ribonucleotide and diphosphate; nicotinate phosphoribosyltransferase 2060207 3915236 SAUSA300_1894 Staphylococcus aureus subsp. aureus USA300_FPR3757 nicotinate phosphoribosyltransferase YP_494546.1 2058738 R 451515 CDS YP_494547.1 87162121 3913585 2060391..2061467 1 NC_007793.1 identified by match to protein family HMM PF02898; nitric oxide synthase oxygenase 2061467 3913585 SAUSA300_1895 Staphylococcus aureus subsp. aureus USA300_FPR3757 nitric oxide synthase oxygenase YP_494547.1 2060391 D 451515 CDS YP_494548.1 87159909 3914955 2061487..2062281 1 NC_007793.1 identified by match to protein family HMM PF00800; match to protein family HMM PF01842; prephenate dehydratase 2062281 pheA 3914955 pheA Staphylococcus aureus subsp. aureus USA300_FPR3757 prephenate dehydratase YP_494548.1 2061487 D 451515 CDS YP_494549.1 87160976 3913308 complement(2062471..2064033) 1 NC_007793.1 identified by match to protein family HMM PF00939; match to protein family HMM PF03600; match to protein family HMM TIGR00785; sodium-dependent transporter 2064033 3913308 SAUSA300_1897 Staphylococcus aureus subsp. aureus USA300_FPR3757 sodium-dependent transporter YP_494549.1 2062471 R 451515 CDS YP_494550.1 87160751 3913414 complement(2064238..2065335) 1 NC_007793.1 hypothetical protein 2065335 3913414 SAUSA300_1898 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494550.1 2064238 R 451515 CDS YP_494551.1 87162153 3914700 2065707..2066267 1 NC_007793.1 identified by match to protein family HMM PF00857; hypothetical protein 2066267 3914700 SAUSA300_1899 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494551.1 2065707 D 451515 CDS YP_494552.1 87161880 3914568 2066320..2067249 1 NC_007793.1 catalyzes the hydrolysis of pyrophosphate to phosphate; putative manganese-dependent inorganic pyrophosphatase 2067249 ppaC 3914568 ppaC Staphylococcus aureus subsp. aureus USA300_FPR3757 putative manganese-dependent inorganic pyrophosphatase YP_494552.1 2066320 D 451515 CDS YP_494553.1 87160029 3913350 2067669..2069048 1 NC_007793.1 identified by match to protein family HMM PF00171; aldehyde dehydrogenase 2069048 aldA2 3913350 aldA2 Staphylococcus aureus subsp. aureus USA300_FPR3757 aldehyde dehydrogenase YP_494553.1 2067669 D 451515 CDS YP_494554.1 87161715 3915281 complement(2069168..2070196) 1 NC_007793.1 hypothetical protein 2070196 3915281 SAUSA300_1902 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494554.1 2069168 R 451515 CDS YP_494555.1 87162416 3915263 2070466..2070867 1 NC_007793.1 hypothetical protein 2070867 3915263 SAUSA300_1903 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494555.1 2070466 D 451515 CDS YP_494556.1 87160235 3913773 complement(2071440..2071613) 1 NC_007793.1 hypothetical protein 2071613 3913773 SAUSA300_1904 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494556.1 2071440 R 451515 CDS YP_494557.1 87160986 3913318 2072064..2073104 1 NC_007793.1 identified by match to protein family HMM PF02275; match to protein family HMM PF03417; hypothetical protein 2073104 3913318 SAUSA300_1905 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494557.1 2072064 D 451515 CDS YP_494558.1 87160698 3914192 complement(2073161..2074003) 1 NC_007793.1 hypothetical protein 2074003 3914192 SAUSA300_1906 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494558.1 2073161 R 451515 CDS YP_494559.1 87160654 3913978 complement(2074000..2074557) 1 NC_007793.1 identified by match to protein family HMM PF08006; hypothetical protein 2074557 3913978 SAUSA300_1907 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494559.1 2074000 R 451515 CDS YP_494560.1 87159943 3914990 complement(2074617..2075141) 1 NC_007793.1 hypothetical protein 2075141 3914990 SAUSA300_1908 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494560.1 2074617 R 451515 CDS YP_494561.1 87160405 3912850 2075262..2075825 1 NC_007793.1 hypothetical protein 2075825 3912850 SAUSA300_1909 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494561.1 2075262 D 451515 CDS YP_494562.1 87161605 3914389 complement(2075891..2076631) 1 NC_007793.1 hypothetical protein 2076631 3914389 SAUSA300_1910 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494562.1 2075891 R 451515 CDS YP_494563.1 87160866 3914138 complement(2076631..2077503) 1 NC_007793.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 2077503 3914138 SAUSA300_1911 Staphylococcus aureus subsp. aureus USA300_FPR3757 ABC transporter ATP-binding protein YP_494563.1 2076631 R 451515 CDS YP_494564.1 87160162 3914514 complement(2077500..2078180) 1 NC_007793.1 hypothetical protein 2078180 3914514 SAUSA300_1912 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494564.1 2077500 R 451515 CDS YP_494565.1 87162013 3915384 complement(2078181..2079077) 1 NC_007793.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 2079077 3915384 SAUSA300_1913 Staphylococcus aureus subsp. aureus USA300_FPR3757 ABC transporter ATP-binding protein YP_494565.1 2078181 R 451515 CDS YP_494566.1 87160727 3913428 complement(2079074..2079454) 1 NC_007793.1 identified by match to protein family HMM PF00392; GntR family regulatory protein 2079454 3913428 SAUSA300_1914 Staphylococcus aureus subsp. aureus USA300_FPR3757 GntR family regulatory protein YP_494566.1 2079074 R 451515 CDS YP_494567.1 87160044 3912897 complement(2079718..2079894) 1 NC_007793.1 hypothetical protein 2079894 3912897 SAUSA300_1915 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494567.1 2079718 R 451515 CDS YP_494568.1 87161893 3914404 2080435..2081721 1 NC_007793.1 identified by match to protein family HMM PF00155; hypothetical protein 2081721 3914404 SAUSA300_1916 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494568.1 2080435 D 451515 CDS YP_494569.1 87160458 3913059 2084489..2084686 1 NC_007793.1 truncated beta-hemolysin 2084686 3913059 SAUSA300_1918 Staphylococcus aureus subsp. aureus USA300_FPR3757 truncated beta-hemolysin YP_494569.1 2084489 D 451515 CDS YP_494570.1 87162213 3914856 complement(2085861..2086211) 1 NC_007793.1 hypothetical protein 2086211 3914856 SAUSA300_1919 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494570.1 2085861 R 451515 CDS YP_494571.1 87161587 3913656 2086896..2087345 1 NC_007793.1 secreted protein that specifically inhibits the activation of neutrophils and monocytes by binding to the formylated peptide receptor and the C5a receptor; blocks neutrophil migration towards the infection site and hinders the establishment of the initial defense against the infection; chemotaxis-inhibiting protein CHIPS 2087345 chs 3913656 chs Staphylococcus aureus subsp. aureus USA300_FPR3757 chemotaxis-inhibiting protein CHIPS YP_494571.1 2086896 D 451515 CDS YP_494572.1 87161357 3912874 complement(2087440..2087736) 1 NC_007793.1 truncated amidase 2087736 3912874 SAUSA300_1921 Staphylococcus aureus subsp. aureus USA300_FPR3757 truncated amidase YP_494572.1 2087440 R 451515 CDS YP_494573.1 87160776 3913751 complement(2088425..2088916) 1 NC_007793.1 identified by match to protein family HMM PF02821; staphylokinase 2088916 sak 3913751 sak Staphylococcus aureus subsp. aureus USA300_FPR3757 staphylokinase YP_494573.1 2088425 R 451515 CDS YP_494574.1 87160120 3913384 complement(2089107..2089862) 1 NC_007793.1 identified by match to protein family HMM PF05257; autolysin 2089862 3913384 SAUSA300_1923 Staphylococcus aureus subsp. aureus USA300_FPR3757 autolysin YP_494574.1 2089107 R 451515 CDS YP_494575.1 87161959 3913716 complement(2089874..2090128) 1 NC_007793.1 identified by similarity to PIR:A89984; match to protein family HMM PF04531; match to protein family HMM TIGR01598; holin 2090128 3913716 SAUSA300_1924 Staphylococcus aureus subsp. aureus USA300_FPR3757 holin YP_494575.1 2089874 R 451515 CDS YP_494576.1 87161676 3914441 complement(2090666..2090962) 1 NC_007793.1 phiPVL ORF17-like protein 2090962 3914441 SAUSA300_1925 Staphylococcus aureus subsp. aureus USA300_FPR3757 phiPVL ORF17-like protein YP_494576.1 2090666 R 451515 CDS YP_494577.1 87161077 3914263 complement(2091020..2091307) 1 NC_007793.1 phi77 ORF044-like protein 2091307 3914263 SAUSA300_1926 Staphylococcus aureus subsp. aureus USA300_FPR3757 phi77 ORF044-like protein YP_494577.1 2091020 R 451515 CDS YP_494578.1 87160045 3912898 complement(2091354..2091506) 1 NC_007793.1 phi77 ORF109-like protein 2091506 3912898 SAUSA300_1927 Staphylococcus aureus subsp. aureus USA300_FPR3757 phi77 ORF109-like protein YP_494578.1 2091354 R 451515 CDS YP_494579.1 87162092 3914635 complement(2091496..2095281) 1 NC_007793.1 identified by match to protein family HMM TIGR01665; phi77 ORF002-like protein, phage minor structural protein 2095281 3914635 SAUSA300_1928 Staphylococcus aureus subsp. aureus USA300_FPR3757 phi77 ORF002-like protein, phage minor structural protein YP_494579.1 2091496 R 451515 CDS YP_494580.1 87162094 3914637 complement(2095297..2096781) 1 NC_007793.1 phi77 ORF004-like protein phage tail component 2096781 3914637 SAUSA300_1929 Staphylococcus aureus subsp. aureus USA300_FPR3757 phi77 ORF004-like protein phage tail component YP_494580.1 2095297 R 451515 CDS YP_494581.1 87161338 3915309 complement(2096778..2101307) 1 NC_007793.1 identified by match to protein family HMM PF01464; match to protein family HMM PF01551; match to protein family HMM TIGR01760; phi77 ORF001-like protein, phage tail tape measure protein 2101307 3915309 SAUSA300_1930 Staphylococcus aureus subsp. aureus USA300_FPR3757 phi77 ORF001-like protein, phage tail tape measure protein YP_494581.1 2096778 R 451515 CDS YP_494582.1 87160311 3914547 complement(2101364..2101525) 1 NC_007793.1 phi77 ORF100-like protein 2101525 3914547 SAUSA300_1931 Staphylococcus aureus subsp. aureus USA300_FPR3757 phi77 ORF100-like protein YP_494582.1 2101364 R 451515 CDS YP_494583.1 87162203 3914846 complement(2101552..2101902) 1 NC_007793.1 hypothetical protein 2101902 3914846 SAUSA300_1932 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494583.1 2101552 R 451515 CDS YP_494584.1 87161123 3914349 complement(2101952..2102092) 1 NC_007793.1 hypothetical protein 2102092 3914349 SAUSA300_1933 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494584.1 2101952 R 451515 CDS YP_494585.1 87159942 3914989 complement(2102218..2102862) 1 NC_007793.1 identified by match to protein family HMM TIGR01603; phi77 ORF020-like protein, phage major tail protein 2102862 3914989 SAUSA300_1934 Staphylococcus aureus subsp. aureus USA300_FPR3757 phi77 ORF020-like protein, phage major tail protein YP_494585.1 2102218 R 451515 CDS YP_494586.1 87162402 3913925 complement(2103267..2103671) 1 NC_007793.1 phi77 ORF029-like protein 2103671 3913925 SAUSA300_1935 Staphylococcus aureus subsp. aureus USA300_FPR3757 phi77 ORF029-like protein YP_494586.1 2103267 R 451515 CDS YP_494587.1 87161648 3913150 complement(2103668..2104030) 1 NC_007793.1 identical to SA1771 (N315); identified by match to protein family HMM TIGR01563; hypothetical protein 2104030 3913150 SAUSA300_1936 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494587.1 2103668 R 451515 CDS YP_494588.1 87160929 3914367 complement(2104288..2104572) 1 NC_007793.1 phi77 ORF045-like protein 2104572 3914367 SAUSA300_1937 Staphylococcus aureus subsp. aureus USA300_FPR3757 phi77 ORF045-like protein YP_494588.1 2104288 R 451515 CDS YP_494589.1 87160211 3913084 complement(2104592..2105737) 1 NC_007793.1 phi77 ORF006-like protein capsid protein 2105737 3913084 SAUSA300_1938 Staphylococcus aureus subsp. aureus USA300_FPR3757 phi77 ORF006-like protein capsid protein YP_494589.1 2104592 R 451515 CDS YP_494590.1 87162394 3913917 complement(2105761..2106498) 1 NC_007793.1 identified by match to protein family HMM PF00574; phi77 ORF015-like protein protease 2106498 3913917 SAUSA300_1939 Staphylococcus aureus subsp. aureus USA300_FPR3757 phi77 ORF015-like protein protease YP_494590.1 2105761 R 451515 CDS YP_494591.1 87161728 3913014 complement(2106482..2107669) 1 NC_007793.1 identified by match to protein family HMM PF04860; match to protein family HMM TIGR01537; phage portal protein 2107669 3913014 SAUSA300_1940 Staphylococcus aureus subsp. aureus USA300_FPR3757 phage portal protein YP_494591.1 2106482 R 451515 CDS YP_494592.1 87160610 3913271 complement(2107685..2109346) 1 NC_007793.1 identified by match to protein family HMM PF03354; phi77 ORF003-like protein, phage terminase, large subunit 2109346 3913271 SAUSA300_1941 Staphylococcus aureus subsp. aureus USA300_FPR3757 phi77 ORF003-like protein, phage terminase, large subunit YP_494592.1 2107685 R 451515 CDS YP_494593.1 87159920 3914966 complement(2109343..2109777) 1 NC_007793.1 hypothetical protein 2109777 3914966 SAUSA300_1942 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494593.1 2109343 R 451515 CDS YP_494594.1 87162073 3914252 complement(2109817..2110116) 1 NC_007793.1 identified by match to protein family HMM PF01844; phi77 ORF040-like protein 2110116 3914252 SAUSA300_1943 Staphylococcus aureus subsp. aureus USA300_FPR3757 phi77 ORF040-like protein YP_494594.1 2109817 R 451515 CDS YP_494595.1 87161376 3914775 complement(2110348..2110683) 1 NC_007793.1 phi77 ORF026-like protein phage transcriptional activator 2110683 3914775 SAUSA300_1944 Staphylococcus aureus subsp. aureus USA300_FPR3757 phi77 ORF026-like protein phage transcriptional activator YP_494595.1 2110348 R 451515 CDS YP_494596.1 87162309 3913618 complement(2110792..2110992) 1 NC_007793.1 identified by match to protein family HMM PF07438; phi77 ORF071-like protein 2110992 3913618 SAUSA300_1945 Staphylococcus aureus subsp. aureus USA300_FPR3757 phi77 ORF071-like protein YP_494596.1 2110792 R 451515 CDS YP_494597.1 87160353 3915128 complement(2110992..2111141) 1 NC_007793.1 identified by match to protein family HMM PF06116; phiPVL ORF057-like protein, transcriptional activator RinB 2111141 3915128 SAUSA300_1946 Staphylococcus aureus subsp. aureus USA300_FPR3757 phiPVL ORF057-like protein, transcriptional activator RinB YP_494597.1 2110992 R 451515 CDS YP_494598.1 87159887 3914109 complement(2111138..2111524) 1 NC_007793.1 phi77 ORF031-like protein 2111524 3914109 SAUSA300_1947 Staphylococcus aureus subsp. aureus USA300_FPR3757 phi77 ORF031-like protein YP_494598.1 2111138 R 451515 CDS YP_494599.1 87160571 3914997 complement(2111521..2111727) 1 NC_007793.1 identified by match to protein family HMM PF07129; phi77 ORF069-like protein 2111727 3914997 SAUSA300_1948 Staphylococcus aureus subsp. aureus USA300_FPR3757 phi77 ORF069-like protein YP_494599.1 2111521 R 451515 CDS YP_494600.1 87161496 3913209 complement(2112006..2112539) 1 NC_007793.1 identified by match to protein family HMM PF00692; match to protein family HMM TIGR00576; dUTP diphosphatase 2112539 dut 3913209 dut Staphylococcus aureus subsp. aureus USA300_FPR3757 dUTP diphosphatase YP_494600.1 2112006 R 451515 CDS YP_494601.1 87162031 3914288 complement(2112532..2112774) 1 NC_007793.1 hypothetical protein 2112774 3914288 SAUSA300_1950 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494601.1 2112532 R 451515 CDS YP_494602.1 87160297 3914533 complement(2112764..2113000) 1 NC_007793.1 phiPVL ORF052-like protein 2113000 3914533 SAUSA300_1951 Staphylococcus aureus subsp. aureus USA300_FPR3757 phiPVL ORF052-like protein YP_494602.1 2112764 R 451515 CDS YP_494603.1 87160868 3914140 complement(2112993..2113364) 1 NC_007793.1 phiPV083 ORF027-like protein 2113364 3914140 SAUSA300_1952 Staphylococcus aureus subsp. aureus USA300_FPR3757 phiPV083 ORF027-like protein YP_494603.1 2112993 R 451515 CDS YP_494604.1 87160420 3913138 complement(2113373..2113615) 1 NC_007793.1 identified by match to protein family HMM PF06194; phiPVL ORF051-like protein 2113615 3913138 SAUSA300_1953 Staphylococcus aureus subsp. aureus USA300_FPR3757 phiPVL ORF051-like protein YP_494604.1 2113373 R 451515 CDS YP_494605.1 87160860 3914131 complement(2113619..2113996) 1 NC_007793.1 identified by match to protein family HMM PF07768; phiPVL ORF050-like protein 2113996 3914131 SAUSA300_1954 Staphylococcus aureus subsp. aureus USA300_FPR3757 phiPVL ORF050-like protein YP_494605.1 2113619 R 451515 CDS YP_494606.1 87162011 3915382 complement(2114000..2114404) 1 NC_007793.1 identified by match to protein family HMM PF05866; putative endodeoxyribonuclease RusA 2114404 3915382 SAUSA300_1955 Staphylococcus aureus subsp. aureus USA300_FPR3757 putative endodeoxyribonuclease RusA YP_494606.1 2114000 R 451515 CDS YP_494607.1 87161211 3912786 complement(2114413..2114631) 1 NC_007793.1 hypothetical protein 2114631 3912786 SAUSA300_1956 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494607.1 2114413 R 451515 CDS YP_494608.1 87159906 3914952 complement(2114638..2115531) 1 NC_007793.1 identified by match to protein family HMM PF04271; match to protein family HMM TIGR01446; phiPVL ORF046-like protein 2115531 3914952 SAUSA300_1957 Staphylococcus aureus subsp. aureus USA300_FPR3757 phiPVL ORF046-like protein YP_494608.1 2114638 R 451515 CDS YP_494609.1 87162071 3914250 complement(2115561..2116031) 1 NC_007793.1 identified by match to protein family HMM PF00436; match to protein family HMM TIGR00621; single-strand binding protein 2116031 3914250 SAUSA300_1958 Staphylococcus aureus subsp. aureus USA300_FPR3757 single-strand binding protein YP_494609.1 2115561 R 451515 CDS YP_494610.1 87161678 3914443 complement(2116032..2116517) 1 NC_007793.1 phiPVL ORF044-like protein 2116517 3914443 SAUSA300_1959 Staphylococcus aureus subsp. aureus USA300_FPR3757 phiPVL ORF044-like protein YP_494610.1 2116032 R 451515 CDS YP_494611.1 87160614 3913275 complement(2116730..2117650) 1 NC_007793.1 identified by match to protein family HMM PF03837; match to protein family HMM TIGR00616; putative phage-related DNA recombination protein 2117650 3913275 SAUSA300_1960 Staphylococcus aureus subsp. aureus USA300_FPR3757 putative phage-related DNA recombination protein YP_494611.1 2116730 R 451515 CDS YP_494612.1 87161143 3913732 complement(2117652..2119607) 1 NC_007793.1 phiPVL ORF41-like protein 2119607 3913732 SAUSA300_1961 Staphylococcus aureus subsp. aureus USA300_FPR3757 phiPVL ORF41-like protein YP_494612.1 2117652 R 451515 CDS YP_494613.1 87160373 3912799 complement(2119876..2120136) 1 NC_007793.1 identified by match to protein family HMM PF06531; phiPVL ORF39-like protein 2120136 3912799 SAUSA300_1962 Staphylococcus aureus subsp. aureus USA300_FPR3757 phiPVL ORF39-like protein YP_494613.1 2119876 R 451515 CDS YP_494614.1 87162242 3914867 complement(2120176..2120436) 1 NC_007793.1 hypothetical protein 2120436 3914867 SAUSA300_1963 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494614.1 2120176 R 451515 CDS YP_494615.1 87161504 3913217 complement(2120689..2121009) 1 NC_007793.1 identified by match to protein family HMM PF05595; hypothetical protein 2121009 3913217 SAUSA300_1964 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494615.1 2120689 R 451515 CDS YP_494616.1 87161896 3914407 2121059..2121298 1 NC_007793.1 hypothetical protein 2121298 3914407 SAUSA300_1965 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494616.1 2121059 D 451515 CDS YP_494617.1 87159918 3914964 complement(2121487..2122239) 1 NC_007793.1 identified by match to protein family HMM PF03374; phi77 ORF014-like protein, phage anti-repressor protein 2122239 3914964 SAUSA300_1966 Staphylococcus aureus subsp. aureus USA300_FPR3757 phi77 ORF014-like protein, phage anti-repressor protein YP_494617.1 2121487 R 451515 CDS YP_494618.1 87160597 3915216 2122290..2122619 1 NC_007793.1 hypothetical protein 2122619 3915216 SAUSA300_1967 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494618.1 2122290 D 451515 CDS YP_494619.1 87161498 3913211 complement(2122839..2123288) 1 NC_007793.1 identified by match to protein family HMM PF01381; putative phage transcriptional regulator 2123288 3913211 SAUSA300_1968 Staphylococcus aureus subsp. aureus USA300_FPR3757 putative phage transcriptional regulator YP_494619.1 2122839 R 451515 CDS YP_494620.1 87160268 3913670 2123236..2123949 1 NC_007793.1 identified by match to protein family HMM PF00717; match to protein family HMM PF01381; phi77 ORF011-like protein, phage transcriptional repressor 2123949 3913670 SAUSA300_1969 Staphylococcus aureus subsp. aureus USA300_FPR3757 phi77 ORF011-like protein, phage transcriptional repressor YP_494620.1 2123236 D 451515 CDS YP_494621.1 87161004 3913570 2123965..2124897 1 NC_007793.1 identified by match to protein family HMM PF00929; putative exonuclease 2124897 3913570 SAUSA300_1970 Staphylococcus aureus subsp. aureus USA300_FPR3757 putative exonuclease YP_494621.1 2123965 D 451515 CDS YP_494622.1 87161747 3913892 2125708..2126421 1 NC_007793.1 phi77 ORF017-like protein 2126421 3913892 SAUSA300_1971 Staphylococcus aureus subsp. aureus USA300_FPR3757 phi77 ORF017-like protein YP_494622.1 2125708 D 451515 CDS YP_494623.1 87162325 3913459 2126612..2127649 1 NC_007793.1 identified by match to protein family HMM PF00589; integrase 2127649 int 3913459 int Staphylococcus aureus subsp. aureus USA300_FPR3757 integrase YP_494623.1 2126612 D 451515 CDS YP_494624.1 87160283 3913490 2127706..2128530 1 NC_007793.1 identified by match to protein family HMM PF03372; truncated beta-hemolysin 2128530 3913490 SAUSA300_1973 Staphylococcus aureus subsp. aureus USA300_FPR3757 truncated beta-hemolysin YP_494624.1 2127706 D 451515 CDS YP_494625.1 87160982 3913314 complement(2128768..2129784) 1 NC_007793.1 identified by match to protein family HMM PF07968; match to protein family HMM TIGR01002; leukocidin/hemolysin toxin family protein 2129784 3913314 SAUSA300_1974 Staphylococcus aureus subsp. aureus USA300_FPR3757 leukocidin/hemolysin toxin family protein YP_494625.1 2128768 R 451515 CDS YP_494626.1 87162038 3914314 complement(2129806..2130861) 1 NC_007793.1 identified by match to protein family HMM PF07968; Aerolysin/leukocidin family protein 2130861 3914314 SAUSA300_1975 Staphylococcus aureus subsp. aureus USA300_FPR3757 Aerolysin/leukocidin family protein YP_494626.1 2129806 R 451515 CDS YP_494627.1 87162292 3913601 2131296..2132519 1 NC_007793.1 dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica.; succinyl-diaminopimelate desuccinylase 2132519 3913601 SAUSA300_1976 Staphylococcus aureus subsp. aureus USA300_FPR3757 succinyl-diaminopimelate desuccinylase YP_494627.1 2131296 D 451515 CDS YP_494628.1 87161749 3913894 complement(2132891..2133736) 1 NC_007793.1 hypothetical protein 2133736 3913894 SAUSA300_1977 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494628.1 2132891 R 451515 CDS YP_494629.1 87161142 3913731 complement(2133798..2134709) 1 NC_007793.1 identified by match to protein family HMM PF01497; ferric hydroxamate receptor 2134709 3913731 SAUSA300_1978 Staphylococcus aureus subsp. aureus USA300_FPR3757 ferric hydroxamate receptor YP_494629.1 2133798 R 451515 CDS YP_494630.1 87160397 3912842 2134870..2136177 1 NC_007793.1 identified by match to protein family HMM PF02386; cation transport family protein 2136177 3912842 SAUSA300_1979 Staphylococcus aureus subsp. aureus USA300_FPR3757 cation transport family protein YP_494630.1 2134870 D 451515 CDS YP_494631.1 87161923 3914583 complement(2137030..2137473) 1 NC_007793.1 identified by match to protein family HMM PF00583; acetyltransferase 2137473 3914583 SAUSA300_1980 Staphylococcus aureus subsp. aureus USA300_FPR3757 acetyltransferase YP_494631.1 2137030 R 451515 CDS YP_494632.1 87161459 3914050 complement(2138333..2138923) 1 NC_007793.1 identified by match to protein family HMM PF03592; phage terminase family protein 2138923 3914050 SAUSA300_1981 Staphylococcus aureus subsp. aureus USA300_FPR3757 phage terminase family protein YP_494632.1 2138333 R 451515 CDS YP_494633.1 87160700 3914194 complement(2139834..2141450) 1 NC_007793.1 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; chaperonin GroEL 2141450 groEL 3914194 groEL Staphylococcus aureus subsp. aureus USA300_FPR3757 chaperonin GroEL YP_494633.1 2139834 R 451515 CDS YP_494634.1 87160934 3914372 complement(2141526..2141810) 1 NC_007793.1 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; co-chaperonin GroES 2141810 groES 3914372 groES Staphylococcus aureus subsp. aureus USA300_FPR3757 co-chaperonin GroES YP_494634.1 2141526 R 451515 CDS YP_494635.1 87160232 3913770 2141985..2142728 1 NC_007793.1 identified by match to protein family HMM PF02517; hypothetical protein 2142728 3913770 SAUSA300_1984 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494635.1 2141985 D 451515 CDS YP_494636.1 87160798 3914618 complement(2142753..2144006) 1 NC_007793.1 serine-aspartate repeat-containing protein SdrH 2144006 sdrH 3914618 sdrH Staphylococcus aureus subsp. aureus USA300_FPR3757 serine-aspartate repeat-containing protein SdrH YP_494636.1 2142753 R 451515 CDS YP_494637.1 87160052 3912905 2144203..2144829 1 NC_007793.1 identified by match to protein family HMM PF00881; hypothetical protein 2144829 3912905 SAUSA300_1986 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494637.1 2144203 D 451515 CDS YP_494638.1 87161932 3914592 2145190..2145975 1 NC_007793.1 identified by match to protein family HMM PF00795; carbon-nitrogen family hydrolase 2145975 3914592 SAUSA300_1987 Staphylococcus aureus subsp. aureus USA300_FPR3757 carbon-nitrogen family hydrolase YP_494638.1 2145190 D 451515 CDS YP_494639.1 87161319 3914816 complement(2146572..2146706) 1 NC_007793.1 Lyses erythrocytes and other mammalian cells; delta-hemolysin 2146706 3914816 SAUSA300_1988 Staphylococcus aureus subsp. aureus USA300_FPR3757 delta-hemolysin YP_494639.1 2146572 R 451515 CDS YP_494640.1 87161153 3914498 2146942..2147511 1 NC_007793.1 identified by match to protein family HMM PF04647; accessory gene regulator protein B 2147511 agrB 3914498 agrB Staphylococcus aureus subsp. aureus USA300_FPR3757 accessory gene regulator protein B YP_494640.1 2146942 D 451515 CDS YP_494641.1 87160431 3913149 2147508..2147648 1 NC_007793.1 identified by match to protein family HMM PF05931; accessory gene regulator protein D 2147648 agrD 3913149 agrD Staphylococcus aureus subsp. aureus USA300_FPR3757 accessory gene regulator protein D YP_494641.1 2147508 D 451515 CDS YP_494642.1 87162285 3915325 2147721..2148965 1 NC_007793.1 accessory gene regulator protein C 2148965 agrC 3915325 agrC Staphylococcus aureus subsp. aureus USA300_FPR3757 accessory gene regulator protein C YP_494642.1 2147721 D 451515 CDS YP_494643.1 87161607 3914391 2149074..2149700 1 NC_007793.1 identified by match to protein family HMM PF00072; match to protein family HMM PF04397; accessory gene regulator protein A 2149700 agrA 3914391 agrA Staphylococcus aureus subsp. aureus USA300_FPR3757 accessory gene regulator protein A YP_494643.1 2149074 D 451515 CDS YP_494644.1 87162151 3914698 complement(2150067..2151026) 1 NC_007793.1 identified by match to protein family HMM PF00294; PfkB family kinase 2151026 3914698 SAUSA300_1993 Staphylococcus aureus subsp. aureus USA300_FPR3757 PfkB family kinase YP_494644.1 2150067 R 451515 CDS YP_494645.1 87162074 3914253 complement(2151023..2152507) 1 NC_007793.1 identified by match to protein family HMM PF00251; match to protein family HMM TIGR01322; sucrose-6-phosphate hydrolase 2152507 scrB 3914253 scrB Staphylococcus aureus subsp. aureus USA300_FPR3757 sucrose-6-phosphate hydrolase YP_494645.1 2151023 R 451515 CDS YP_494646.1 87161098 3914304 complement(2152656..2153606) 1 NC_007793.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532; sucrose operon repressor 2153606 scrR 3914304 scrR Staphylococcus aureus subsp. aureus USA300_FPR3757 sucrose operon repressor YP_494646.1 2152656 R 451515 CDS YP_494647.1 87161683 3914448 complement(2153789..2155039) 1 NC_007793.1 identified by match to protein family HMM PF00909; match to protein family HMM TIGR00836; ammonium transporter 2155039 amt 3914448 amt Staphylococcus aureus subsp. aureus USA300_FPR3757 ammonium transporter YP_494647.1 2153789 R 451515 CDS YP_494648.1 87161883 3914394 complement(2155247..2155471) 1 NC_007793.1 identified by match to protein family HMM PF01206; hypothetical protein 2155471 3914394 SAUSA300_1997 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494648.1 2155247 R 451515 CDS YP_494649.1 87160492 3915082 complement(2155531..2156610) 1 NC_007793.1 identified by match to protein family HMM PF04143; hypothetical protein 2156610 3915082 SAUSA300_1998 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494649.1 2155531 R 451515 CDS YP_494650.1 87160767 3913742 complement(2156914..2157549) 1 NC_007793.1 modulates transcription in response to the NADH/NAD(+) redox state; redox-sensing transcriptional repressor Rex 2157549 rex 3913742 rex Staphylococcus aureus subsp. aureus USA300_FPR3757 redox-sensing transcriptional repressor Rex YP_494650.1 2156914 R 451515 CDS YP_494651.1 87161346 3912863 2157802..2159730 1 NC_007793.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 2159730 vga 3912863 vga Staphylococcus aureus subsp. aureus USA300_FPR3757 ABC transporter ATP-binding protein YP_494651.1 2157802 D 451515 CDS YP_494652.1 87160303 3914539 2160091..2161701 1 NC_007793.1 identified by match to protein family HMM PF00488; DNA mismatch repair protein-like protein 2161701 3914539 SAUSA300_2001 Staphylococcus aureus subsp. aureus USA300_FPR3757 DNA mismatch repair protein-like protein YP_494652.1 2160091 D 451515 CDS YP_494653.1 87160879 3912956 complement(2161803..2162828) 1 NC_007793.1 in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity; putative DNA-binding/iron metalloprotein/AP endonuclease 2162828 3912956 SAUSA300_2002 Staphylococcus aureus subsp. aureus USA300_FPR3757 putative DNA-binding/iron metalloprotein/AP endonuclease YP_494653.1 2161803 R 451515 CDS YP_494654.1 87159974 3914826 complement(2162821..2163285) 1 NC_007793.1 identified by match to protein family HMM PF00583; match to protein family HMM TIGR01575; ribosomal-protein-alanine acetyltransferase 2163285 rimI 3914826 rimI Staphylococcus aureus subsp. aureus USA300_FPR3757 ribosomal-protein-alanine acetyltransferase YP_494654.1 2162821 R 451515 CDS YP_494655.1 87160647 3913971 complement(2163258..2163920) 1 NC_007793.1 identified by match to protein family HMM PF00814; hypothetical protein 2163920 3913971 SAUSA300_2004 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494655.1 2163258 R 451515 CDS YP_494656.1 87161677 3914442 complement(2163901..2164335) 1 NC_007793.1 identified by match to protein family HMM PF02367; match to protein family HMM TIGR00150; hypothetical protein 2164335 3914442 SAUSA300_2005 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494656.1 2163901 R 451515 CDS YP_494657.1 87162138 3914685 2164873..2166561 1 NC_007793.1 catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis; dihydroxy-acid dehydratase 2166561 ilvD 3914685 ilvD Staphylococcus aureus subsp. aureus USA300_FPR3757 dihydroxy-acid dehydratase YP_494657.1 2164873 D 451515 CDS YP_494658.1 87160948 3913788 2166589..2168358 1 NC_007793.1 identified by match to protein family HMM PF00205; match to protein family HMM PF02775; match to protein family HMM PF02776; match to protein family HMM TIGR00118; acetolactate synthase large subunit 2168358 ilvB 3913788 ilvB Staphylococcus aureus subsp. aureus USA300_FPR3757 acetolactate synthase large subunit YP_494658.1 2166589 D 451515 CDS YP_494659.1 87160660 3913984 2168358..2168612 1 NC_007793.1 with IlvI catalyzes the formation of 2-acetolactate from pyruvate, this subunit subunit is required for full activity and valine sensitivity; also known as acetolactate synthase small; acetolactate synthase 1 regulatory subunit 2168612 ilvN 3913984 ilvN Staphylococcus aureus subsp. aureus USA300_FPR3757 acetolactate synthase 1 regulatory subunit YP_494659.1 2168358 D 451515 CDS YP_494660.1 87161430 3914079 2168749..2169753 1 NC_007793.1 catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis; ketol-acid reductoisomerase 2169753 ilvC 3914079 ilvC Staphylococcus aureus subsp. aureus USA300_FPR3757 ketol-acid reductoisomerase YP_494660.1 2168749 D 451515 CDS YP_494661.1 87161838 3913809 2169783..2171312 1 NC_007793.1 catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis; 2-isopropylmalate synthase 2171312 leuA 3913809 leuA Staphylococcus aureus subsp. aureus USA300_FPR3757 2-isopropylmalate synthase YP_494661.1 2169783 D 451515 CDS YP_494662.1 87160490 3915080 2171315..2172361 1 NC_007793.1 catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis; 3-isopropylmalate dehydrogenase 2172361 leuB 3915080 leuB Staphylococcus aureus subsp. aureus USA300_FPR3757 3-isopropylmalate dehydrogenase YP_494662.1 2171315 D 451515 CDS YP_494663.1 87161776 3913630 2172375..2173745 1 NC_007793.1 dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate; isopropylmalate isomerase large subunit 2173745 leuC 3913630 leuC Staphylococcus aureus subsp. aureus USA300_FPR3757 isopropylmalate isomerase large subunit YP_494663.1 2172375 D 451515 CDS YP_494664.1 87160823 3913544 2173746..2174318 1 NC_007793.1 catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D; isopropylmalate isomerase small subunit 2174318 leuD 3913544 leuD Staphylococcus aureus subsp. aureus USA300_FPR3757 isopropylmalate isomerase small subunit YP_494664.1 2173746 D 451515 CDS YP_494665.1 87160316 3915391 2174333..2175601 1 NC_007793.1 catalyzes the formation of 2-oxobutanoate from L-threonine; biosynthetic; threonine dehydratase 2175601 ilvA 3915391 ilvA Staphylococcus aureus subsp. aureus USA300_FPR3757 threonine dehydratase YP_494665.1 2174333 D 451515 CDS YP_494666.1 87161198 3914909 complement(2181964..2182419) 1 NC_007793.1 identified by match to protein family HMM PF03926; hypothetical protein 2182419 3914909 SAUSA300_2020 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494666.1 2181964 R 451515 CDS YP_494667.1 87160760 3913423 complement(2182412..2184562) 1 NC_007793.1 identified by match to protein family HMM PF00575; S1 RNA-binding domain-containing protein 2184562 3913423 SAUSA300_2021 Staphylococcus aureus subsp. aureus USA300_FPR3757 S1 RNA-binding domain-containing protein YP_494667.1 2182412 R 451515 CDS YP_494668.1 87160164 3914516 complement(2184996..2185766) 1 NC_007793.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma B is not essential for sporulation; rather it is required for maximal expression of ctc and csbA which are transcribed in the early stationary phase under conditions inimical to sporulation; induced by heat shock, salt stress, oxidative stress, glucose limitation, oxygen limitation and entry into stationary phase; RNA polymerase sigma factor SigB 2185766 rpoF 3914516 rpoF Staphylococcus aureus subsp. aureus USA300_FPR3757 RNA polymerase sigma factor SigB YP_494668.1 2184996 R 451515 CDS YP_494669.1 87161829 3913800 complement(2185741..2186220) 1 NC_007793.1 binds to sigma-B preventing the formation of an RNA polymerase holoenzyme; serine-protein kinase RsbW 2186220 rsbW 3913800 rsbW Staphylococcus aureus subsp. aureus USA300_FPR3757 serine-protein kinase RsbW YP_494669.1 2185741 R 451515 CDS YP_494670.1 87161266 3915237 complement(2186222..2186548) 1 NC_007793.1 identified by match to protein family HMM PF01740; match to protein family HMM TIGR00377; anti-sigma-B factor, antagonist 2186548 rsbV 3915237 rsbV Staphylococcus aureus subsp. aureus USA300_FPR3757 anti-sigma-B factor, antagonist YP_494670.1 2186222 R 451515 CDS YP_494671.1 87161689 3914454 complement(2186667..2187668) 1 NC_007793.1 identified by match to protein family HMM PF07228; sigma-B regulation protein 2187668 rsbU 3914454 rsbU Staphylococcus aureus subsp. aureus USA300_FPR3757 sigma-B regulation protein YP_494671.1 2186667 R 451515 CDS YP_494672.1 87161920 3913011 complement(2188018..2188380) 1 NC_007793.1 identified by match to protein family HMM PF02452; PemK family protein 2188380 3913011 SAUSA300_2026 Staphylococcus aureus subsp. aureus USA300_FPR3757 PemK family protein YP_494672.1 2188018 R 451515 CDS YP_494673.1 87161019 3913935 complement(2188632..2189780) 1 NC_007793.1 identified by match to protein family HMM PF00842; match to protein family HMM PF01168; match to protein family HMM TIGR00492; alanine racemase 2189780 alr 3913935 alr Staphylococcus aureus subsp. aureus USA300_FPR3757 alanine racemase YP_494673.1 2188632 R 451515 CDS YP_494674.1 87160456 3913057 complement(2189846..2190205) 1 NC_007793.1 Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids; 4'-phosphopantetheinyl transferase 2190205 acpS 3913057 acpS Staphylococcus aureus subsp. aureus USA300_FPR3757 4'-phosphopantetheinyl transferase YP_494674.1 2189846 R 451515 CDS YP_494675.1 87161582 3913651 complement(2190209..2190700) 1 NC_007793.1 identified by match to protein family HMM PF03703; hypothetical protein 2190700 3913651 SAUSA300_2029 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494675.1 2190209 R 451515 CDS YP_494676.1 87162216 3913991 complement(2190687..2192270) 1 NC_007793.1 identified by match to protein family HMM PF03703; hypothetical protein 2192270 3913991 SAUSA300_2030 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494676.1 2190687 R 451515 CDS YP_494677.1 87162080 3914623 complement(2192263..2192742) 1 NC_007793.1 hypothetical protein 2192742 3914623 SAUSA300_2031 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494677.1 2192263 R 451515 CDS YP_494678.1 87160061 3912914 complement(2192950..2193510) 1 NC_007793.1 one of the components of the high-affinity ATP-driven potassium transport (or KDP)system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions; the C subunit may be involved in assembly of the KDP complex; potassium-transporting ATPase subunit C 2193510 kdpC 3912914 kdpC Staphylococcus aureus subsp. aureus USA300_FPR3757 potassium-transporting ATPase subunit C YP_494678.1 2192950 R 451515 CDS YP_494679.1 87160617 3913278 complement(2193530..2195503) 1 NC_007793.1 One of the components of the high-affinity ATP-driven potassium transport (or KDP) system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions; potassium-transporting ATPase subunit B 2195503 kdpB 3913278 kdpB Staphylococcus aureus subsp. aureus USA300_FPR3757 potassium-transporting ATPase subunit B YP_494679.1 2193530 R 451515 CDS YP_494680.1 87161182 3914756 complement(2195576..2197252) 1 NC_007793.1 catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions; potassium-transporting ATPase subunit A 2197252 kdpA 3914756 kdpA Staphylococcus aureus subsp. aureus USA300_FPR3757 potassium-transporting ATPase subunit A YP_494680.1 2195576 R 451515 CDS YP_494681.1 87162243 3914868 2197524..2200181 1 NC_007793.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM PF02702; sensor histidine kinase, KdpD 2200181 kdpD 3914868 kdpD Staphylococcus aureus subsp. aureus USA300_FPR3757 sensor histidine kinase, KdpD YP_494681.1 2197524 D 451515 CDS YP_494682.1 87160950 3913790 2200181..2200876 1 NC_007793.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator, KdpE 2200876 kdpE 3913790 kdpE Staphylococcus aureus subsp. aureus USA300_FPR3757 DNA-binding response regulator, KdpE YP_494682.1 2200181 D 451515 CDS YP_494683.1 87161548 3914675 complement(2201245..2202765) 1 NC_007793.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; ATP-dependent RNA helicase 2202765 3914675 SAUSA300_2037 Staphylococcus aureus subsp. aureus USA300_FPR3757 ATP-dependent RNA helicase YP_494683.1 2201245 R 451515 CDS YP_494684.1 87162126 3913590 complement(2203282..2204640) 1 NC_007793.1 identified by match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM TIGR01143; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase 2204640 murF 3913590 murF Staphylococcus aureus subsp. aureus USA300_FPR3757 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase YP_494684.1 2203282 R 451515 CDS YP_494685.1 87159975 3914827 complement(2204655..2205725) 1 NC_007793.1 D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; D-alanyl-alanine synthetase A 2205725 ddl 3914827 ddl Staphylococcus aureus subsp. aureus USA300_FPR3757 D-alanyl-alanine synthetase A YP_494685.1 2204655 R 451515 CDS YP_494686.1 87160585 3915011 2206043..2207245 1 NC_007793.1 identified by match to protein family HMM PF01098; hypothetical protein 2207245 3915011 SAUSA300_2040 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494686.1 2206043 D 451515 CDS YP_494687.1 87161393 3914163 complement(2207509..2207646) 1 NC_007793.1 hypothetical protein 2207646 3914163 SAUSA300_2041 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494687.1 2207509 R 451515 CDS YP_494688.1 87161859 3913965 complement(2207774..2207983) 1 NC_007793.1 hypothetical protein 2207983 3913965 SAUSA300_2042 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494688.1 2207774 R 451515 CDS YP_494689.1 87159983 3914835 complement(2207995..2208288) 1 NC_007793.1 identified by match to protein family HMM PF02583; hypothetical protein 2208288 3914835 SAUSA300_2043 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494689.1 2207995 R 451515 CDS YP_494690.1 87160381 3912807 2208379..2209938 1 NC_007793.1 identified by match to protein family HMM PF00614; cardiolipin synthetase 2209938 cls 3912807 cls Staphylococcus aureus subsp. aureus USA300_FPR3757 cardiolipin synthetase YP_494690.1 2208379 D 451515 CDS YP_494691.1 87160737 3913438 2209966..2210613 1 NC_007793.1 identified by match to protein family HMM PF01966; HD domain-containing protein 2210613 3913438 SAUSA300_2045 Staphylococcus aureus subsp. aureus USA300_FPR3757 HD domain-containing protein YP_494691.1 2209966 D 451515 CDS YP_494692.1 87161292 3914711 complement(2211426..2212298) 1 NC_007793.1 identified by match to protein family HMM PF02096; membrane protein oxaA 2212298 oxaA 3914711 oxaA Staphylococcus aureus subsp. aureus USA300_FPR3757 membrane protein oxaA YP_494692.1 2211426 R 451515 CDS YP_494693.1 87161886 3914397 complement(2212384..2213025) 1 NC_007793.1 Condenses 4-methyl-5-(beta-hydroxyethyl)-thiazole monophosphate and 4-amino-5-hydroxymethyl pyrimidine pyrophosphate to form thiamine monophosphate; thiamine-phosphate pyrophosphorylase 2213025 thiE 3914397 thiE Staphylococcus aureus subsp. aureus USA300_FPR3757 thiamine-phosphate pyrophosphorylase YP_494693.1 2212384 R 451515 CDS YP_494694.1 87160500 3915091 complement(2213027..2213818) 1 NC_007793.1 catalyzes the formation of 4-methyl-5-(2-phosphoethyl)-thiazole and ADP from 4-methyl-5-(2-hydroxyethyl)-thiazole and ATP; hydroxyethylthiazole kinase 2213818 thiM 3915091 thiM Staphylococcus aureus subsp. aureus USA300_FPR3757 hydroxyethylthiazole kinase YP_494694.1 2213027 R 451515 CDS YP_494695.1 87161070 3914256 complement(2213802..2214632) 1 NC_007793.1 catalyzes the formation of 4-amino-2-methyl-5-diphosphomethylpyrimidine; phosphomethylpyrimidine kinase 2214632 thiD 3914256 thiD Staphylococcus aureus subsp. aureus USA300_FPR3757 phosphomethylpyrimidine kinase YP_494695.1 2213802 R 451515 CDS YP_494696.1 87161632 3913682 complement(2214625..2215314) 1 NC_007793.1 identified by match to protein family HMM PF03070; TENA/THI-4 family protein 2215314 3913682 SAUSA300_2050 Staphylococcus aureus subsp. aureus USA300_FPR3757 TENA/THI-4 family protein YP_494696.1 2214625 R 451515 CDS YP_494697.1 87162218 3913993 complement(2215700..2216395) 1 NC_007793.1 identified by match to protein family HMM PF06737; hypothetical protein 2216395 3913993 SAUSA300_2051 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494697.1 2215700 R 451515 CDS YP_494698.1 87160183 3913251 complement(2216832..2217179) 1 NC_007793.1 identified by match to protein family HMM PF00436; single-stranded DNA- binding protein family 2217179 3913251 SAUSA300_2052 Staphylococcus aureus subsp. aureus USA300_FPR3757 single-stranded DNA- binding protein family YP_494698.1 2216832 R 451515 CDS YP_494699.1 87160763 3913738 2217373..2217813 1 NC_007793.1 hypothetical protein 2217813 3913738 SAUSA300_2053 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494699.1 2217373 D 451515 CDS YP_494700.1 87161261 3913870 complement(2217872..2218312) 1 NC_007793.1 in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP; (3R)-hydroxymyristoyl-ACP dehydratase 2218312 fabZ 3913870 fabZ Staphylococcus aureus subsp. aureus USA300_FPR3757 (3R)-hydroxymyristoyl-ACP dehydratase YP_494700.1 2217872 R 451515 CDS YP_494701.1 87161215 3912790 complement(2218346..2219611) 1 NC_007793.1 adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 2219611 murA 3912790 murA Staphylococcus aureus subsp. aureus USA300_FPR3757 UDP-N-acetylglucosamine 1-carboxyvinyltransferase YP_494701.1 2218346 R 451515 CDS YP_494702.1 87161995 3914892 complement(2219722..2219955) 1 NC_007793.1 identified by match to protein family HMM PF06612; match to protein family HMM TIGR02327; hypothetical protein 2219955 3914892 SAUSA300_2056 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494702.1 2219722 R 451515 CDS YP_494703.1 87160314 3914550 complement(2220517..2220921) 1 NC_007793.1 part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane; F0F1 ATP synthase subunit epsilon 2220921 atpC 3914550 atpC Staphylococcus aureus subsp. aureus USA300_FPR3757 F0F1 ATP synthase subunit epsilon YP_494703.1 2220517 R 451515 CDS YP_494704.1 87160880 3912957 complement(2220941..2222353) 1 NC_007793.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; F0F1 ATP synthase subunit beta 2222353 atpD 3912957 atpD Staphylococcus aureus subsp. aureus USA300_FPR3757 F0F1 ATP synthase subunit beta YP_494704.1 2220941 R 451515 CDS YP_494705.2 162138567 3915146 complement(2222375..2223241) 1 NC_007793.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit; F0F1 ATP synthase subunit gamma 2223241 atpG 3915146 atpG Staphylococcus aureus subsp. aureus USA300_FPR3757 F0F1 ATP synthase subunit gamma YP_494705.2 2222375 R 451515 CDS YP_494706.1 87160882 3912959 complement(2223272..2224780) 1 NC_007793.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; F0F1 ATP synthase subunit alpha 2224780 atpA 3912959 atpA Staphylococcus aureus subsp. aureus USA300_FPR3757 F0F1 ATP synthase subunit alpha YP_494706.1 2223272 R 451515 CDS YP_494707.1 87160574 3915000 complement(2224802..2225341) 1 NC_007793.1 Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex; F0F1 ATP synthase subunit delta 2225341 atpH 3915000 atpH Staphylococcus aureus subsp. aureus USA300_FPR3757 F0F1 ATP synthase subunit delta YP_494707.1 2224802 R 451515 CDS YP_494708.1 87162300 3913609 complement(2225341..2225862) 1 NC_007793.1 produces ATP from ADP in the presence of a proton gradient across the membrane; subunit B is part of the membrane proton channel; F0F1 ATP synthase subunit B 2225862 atpF 3913609 atpF Staphylococcus aureus subsp. aureus USA300_FPR3757 F0F1 ATP synthase subunit B YP_494708.1 2225341 R 451515 CDS YP_494709.1 87162034 3914291 complement(2226060..2226272) 1 NC_007793.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0; F0F1 ATP synthase subunit C 2226272 atpE 3914291 atpE Staphylococcus aureus subsp. aureus USA300_FPR3757 F0F1 ATP synthase subunit C YP_494709.1 2226060 R 451515 CDS YP_494710.1 87160009 3912920 complement(2226315..2227043) 1 NC_007793.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; F0F1 ATP synthase subunit A 2227043 atpB 3912920 atpB Staphylococcus aureus subsp. aureus USA300_FPR3757 F0F1 ATP synthase subunit A YP_494710.1 2226315 R 451515 CDS YP_494711.1 87160011 3912922 complement(2227584..2228711) 1 NC_007793.1 identified by match to protein family HMM PF02350; match to protein family HMM TIGR00236; UDP-GlcNAc 2-epimerase 2228711 3912922 SAUSA300_2065 Staphylococcus aureus subsp. aureus USA300_FPR3757 UDP-GlcNAc 2-epimerase YP_494711.1 2227584 R 451515 CDS YP_494712.1 87161059 3912769 complement(2228735..2229364) 1 NC_007793.1 Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate; uracil phosphoribosyltransferase 2229364 upp 3912769 upp Staphylococcus aureus subsp. aureus USA300_FPR3757 uracil phosphoribosyltransferase YP_494712.1 2228735 R 451515 CDS YP_494713.1 87161336 3915307 complement(2229392..2230630) 1 NC_007793.1 catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase 2230630 glyA 3915307 glyA Staphylococcus aureus subsp. aureus USA300_FPR3757 serine hydroxymethyltransferase YP_494713.1 2229392 R 451515 CDS YP_494714.1 87162101 3913095 complement(2230657..2231181) 1 NC_007793.1 identified by match to protein family HMM PF04260; match to protein family HMM TIGR01440; hypothetical protein 2231181 3913095 SAUSA300_2068 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494714.1 2230657 R 451515 CDS YP_494715.1 87161464 3914055 complement(2231288..2231707) 1 NC_007793.1 identified by match to protein family HMM PF01451; hypothetical protein 2231707 3914055 SAUSA300_2069 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494715.1 2231288 R 451515 CDS YP_494716.1 87162029 3914286 complement(2231704..2232750) 1 NC_007793.1 identified by match to protein family HMM PF01300; match to protein family HMM PF03481; match to protein family HMM TIGR00057; hypothetical protein 2232750 3914286 SAUSA300_2070 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494716.1 2231704 R 451515 CDS YP_494717.1 87160068 3913292 complement(2232834..2233586) 1 NC_007793.1 identified by match to protein family HMM PF05175; match to protein family HMM TIGR00536; HemK family modification methylase 2233586 3913292 SAUSA300_2071 Staphylococcus aureus subsp. aureus USA300_FPR3757 HemK family modification methylase YP_494717.1 2232834 R 451515 CDS YP_494718.1 87160795 3914615 complement(2233657..2234733) 1 NC_007793.1 recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 2234733 prfA 3914615 prfA Staphylococcus aureus subsp. aureus USA300_FPR3757 peptide chain release factor 1 YP_494718.1 2233657 R 451515 CDS YP_494719.1 87160651 3913975 complement(2234734..2235333) 1 NC_007793.1 catalyzes the formation of thymidine 5'-phosphate from thymidine; thymidine kinase 2235333 tdk 3913975 tdk Staphylococcus aureus subsp. aureus USA300_FPR3757 thymidine kinase YP_494719.1 2234734 R 451515 CDS YP_494720.1 87161370 3914769 complement(2235680..2235934) 1 NC_007793.1 RpmE2; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster do not have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31 type B 2235934 rpmE2 3914769 rpmE2 Staphylococcus aureus subsp. aureus USA300_FPR3757 50S ribosomal protein L31 type B YP_494720.1 2235680 R 451515 CDS YP_494721.1 87160415 3913133 complement(2236052..2237368) 1 NC_007793.1 An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho 2237368 rho 3913133 rho Staphylococcus aureus subsp. aureus USA300_FPR3757 transcription termination factor Rho YP_494721.1 2236052 R 451515 CDS YP_494722.1 87160030 3913351 complement(2237615..2239042) 1 NC_007793.1 identified by match to protein family HMM PF00171; aldehyde dehydrogenase family protein 2239042 3913351 SAUSA300_2076 Staphylococcus aureus subsp. aureus USA300_FPR3757 aldehyde dehydrogenase family protein YP_494722.1 2237615 R 451515 CDS YP_494723.1 87161565 3915180 complement(2239280..2239615) 1 NC_007793.1 identified by match to protein family HMM PF01638; hypothetical protein 2239615 3915180 SAUSA300_2077 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494723.1 2239280 R 451515 CDS YP_494724.1 87161027 3913943 complement(2239704..2240963) 1 NC_007793.1 adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 2240963 murA 3913943 murA Staphylococcus aureus subsp. aureus USA300_FPR3757 UDP-N-acetylglucosamine 1-carboxyvinyltransferase YP_494724.1 2239704 R 451515 CDS YP_494725.1 87162014 3915385 complement(2241429..2242289) 1 NC_007793.1 catalyzes the formation of glycerone phosphate and glyceraldehyde 3-phosphate from fructose 1,6, bisphosphate; induced by anaerobic conditions in Bacillus subtilis; fructose-bisphosphate aldolase 2242289 fba 3915385 fba Staphylococcus aureus subsp. aureus USA300_FPR3757 fructose-bisphosphate aldolase YP_494725.1 2241429 R 451515 CDS YP_494726.1 87161446 3914119 2242507..2243028 1 NC_007793.1 hypothetical protein 2243028 3914119 SAUSA300_2080 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494726.1 2242507 D 451515 CDS YP_494727.1 87160553 3913508 complement(2243137..2244747) 1 NC_007793.1 CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase 2244747 pyrG 3913508 pyrG Staphylococcus aureus subsp. aureus USA300_FPR3757 CTP synthetase YP_494727.1 2243137 R 451515 CDS YP_494728.1 87159916 3914962 complement(2245083..2245613) 1 NC_007793.1 participates in both the initiation and recycling phases of transcription; in the presence of the delta subunit, RNAP displays an increased specificity of transcription, a decreased affinity for nucleic acids, and an increased efficiency of RNA synthesis because of enhanced recycling; DNA-directed RNA polymerase subunit delta 2245613 rpoE 3914962 rpoE Staphylococcus aureus subsp. aureus USA300_FPR3757 DNA-directed RNA polymerase subunit delta YP_494728.1 2245083 R 451515 CDS YP_494729.1 87159905 3914951 complement(2245725..2246585) 1 NC_007793.1 identified by match to protein family HMM PF00583; acetyltransferase 2246585 3914951 SAUSA300_2083 Staphylococcus aureus subsp. aureus USA300_FPR3757 acetyltransferase YP_494729.1 2245725 R 451515 CDS YP_494730.1 87161794 3914037 2247009..2247812 1 NC_007793.1 catalyzes the formation of (R)-4'-phosphopantothenate from (R)-pantothenate in coenzyme A biosynthesis; type II pantothenate kinases are not regulated by feedback inhibition by coenzyme A; pantothenate kinase 2247812 coaA 3914037 coaA Staphylococcus aureus subsp. aureus USA300_FPR3757 pantothenate kinase YP_494730.1 2247009 D 451515 CDS YP_494731.1 87161722 3915288 complement(2247942..2248613) 1 NC_007793.1 hypothetical protein 2248613 3915288 SAUSA300_2085 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494731.1 2247942 R 451515 CDS YP_494732.1 87161131 3913720 complement(2249012..2250205) 1 NC_007793.1 hypothetical protein 2250205 3913720 SAUSA300_2086 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494732.1 2249012 R 451515 CDS YP_494733.1 87161869 3914557 complement(2250205..2251389) 1 NC_007793.1 identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891; putative peptidase 2251389 3914557 SAUSA300_2087 Staphylococcus aureus subsp. aureus USA300_FPR3757 putative peptidase YP_494733.1 2250205 R 451515 CDS YP_494734.1 87161327 3915298 2251700..2252170 1 NC_007793.1 catalyzes the hydrolysis of S-ribosylhomocysteine to homocysteine and autoinducer-2; S-ribosylhomocysteinase 2252170 luxS 3915298 luxS Staphylococcus aureus subsp. aureus USA300_FPR3757 S-ribosylhomocysteinase YP_494734.1 2251700 D 451515 CDS YP_494735.2 162138561 3915249 complement(2252686..2253987) 1 NC_007793.1 Catalyzes the reversible phosphorolysis of pyrimidines in the nucleotide synthesis salvage pathway; pyrimidine-nucleoside phosphorylase 2253987 pdp 3915249 pdp Staphylococcus aureus subsp. aureus USA300_FPR3757 pyrimidine-nucleoside phosphorylase YP_494735.2 2252686 R 451515 CDS YP_494736.1 87160709 3912824 complement(2254266..2254928) 1 NC_007793.1 catalyzes the formation of D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-D-ribose-5-phosphate; deoxyribose-phosphate aldolase 2254928 deoC 3912824 deoC Staphylococcus aureus subsp. aureus USA300_FPR3757 deoxyribose-phosphate aldolase YP_494736.1 2254266 R 451515 CDS YP_494737.1 87160143 3913113 2255243..2255953 1 NC_007793.1 catalyzes the reversible phosphorolysis of ribonucleosides and 2'- deoxyribonucleosides to the free base and (2'-deoxy)ribose-1- phosphate; purine nucleoside phosphorylase 2255953 deoD 3913113 deoD Staphylococcus aureus subsp. aureus USA300_FPR3757 purine nucleoside phosphorylase YP_494737.1 2255243 D 451515 CDS YP_494738.1 87162209 3914852 complement(2256074..2256517) 1 NC_007793.1 identified by match to protein family HMM PF00210; general stress protein 20U 2256517 dps 3914852 dps Staphylococcus aureus subsp. aureus USA300_FPR3757 general stress protein 20U YP_494738.1 2256074 R 451515 CDS YP_494739.1 87161502 3913215 complement(2256717..2257130) 1 NC_007793.1 identified by match to protein family HMM PF04134; hypothetical protein 2257130 3913215 SAUSA300_2093 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494739.1 2256717 R 451515 CDS YP_494740.1 87160789 3914609 complement(2257588..2258961) 1 NC_007793.1 hypothetical protein 2258961 3914609 SAUSA300_2094 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494740.1 2257588 R 451515 CDS YP_494741.1 87161622 3913477 complement(2259633..2259863) 1 NC_007793.1 hypothetical protein 2259863 3913477 SAUSA300_2095 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494741.1 2259633 R 451515 CDS YP_494742.1 87160952 3913792 complement(2259894..2260832) 1 NC_007793.1 identified by match to protein family HMM PF01238; match to protein family HMM TIGR00218; mannose-6-phosphate isomerase 2260832 manA 3913792 manA Staphylococcus aureus subsp. aureus USA300_FPR3757 mannose-6-phosphate isomerase YP_494742.1 2259894 R 451515 CDS YP_494743.1 87161824 3913795 complement(2261267..2261932) 1 NC_007793.1 identified by match to protein family HMM PF01370; hypothetical protein 2261932 3913795 SAUSA300_2097 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494743.1 2261267 R 451515 CDS YP_494744.1 87161247 3913856 2262084..2262404 1 NC_007793.1 identified by match to protein family HMM PF01022; ArsR family transcriptional regulator 2262404 arsR 3913856 arsR Staphylococcus aureus subsp. aureus USA300_FPR3757 ArsR family transcriptional regulator YP_494744.1 2262084 D 451515 CDS YP_494745.1 87160343 3915118 2262406..2263386 1 NC_007793.1 identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297; cation efflux family protein 2263386 3915118 SAUSA300_2099 Staphylococcus aureus subsp. aureus USA300_FPR3757 cation efflux family protein YP_494745.1 2262406 D 451515 CDS YP_494746.1 87162043 3914319 2263652..2264743 1 NC_007793.1 lytic regulatory protein 2264743 3914319 SAUSA300_2100 Staphylococcus aureus subsp. aureus USA300_FPR3757 lytic regulatory protein YP_494746.1 2263652 D 451515 CDS YP_494747.1 87161744 3913030 complement(2266034..2267170) 1 NC_007793.1 SAP domain-containing protein 2267170 3913030 SAUSA300_2101 Staphylococcus aureus subsp. aureus USA300_FPR3757 SAP domain-containing protein YP_494747.1 2266034 R 451515 CDS YP_494748.1 87160883 3912960 complement(2268256..2269113) 1 NC_007793.1 identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484; haloacid dehalogenase-like hydrolase 2269113 3912960 SAUSA300_2102 Staphylococcus aureus subsp. aureus USA300_FPR3757 haloacid dehalogenase-like hydrolase YP_494748.1 2268256 R 451515 CDS YP_494749.1 87160037 3913358 complement(2269181..2269963) 1 NC_007793.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 2269963 3913358 SAUSA300_2103 Staphylococcus aureus subsp. aureus USA300_FPR3757 ABC transporter ATP-binding protein YP_494749.1 2269181 R 451515 CDS YP_494750.1 87160507 3915098 complement(2270195..2272000) 1 NC_007793.1 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source; glucosamine--fructose-6-phosphate aminotransferase 2272000 glmS 3915098 glmS Staphylococcus aureus subsp. aureus USA300_FPR3757 glucosamine--fructose-6-phosphate aminotransferase YP_494750.1 2270195 R 451515 CDS YP_494751.1 87162178 3913875 2272681..2274219 1 NC_007793.1 identified by match to protein family HMM PF02302; match to protein family HMM PF02378; match to protein family HMM TIGR00851; PTS system, mannitol specific IIBC component 2274219 mtlF 3913875 mtlF Staphylococcus aureus subsp. aureus USA300_FPR3757 PTS system, mannitol specific IIBC component YP_494751.1 2272681 D 451515 CDS YP_494752.1 87162111 3913105 2274254..2276386 1 NC_007793.1 identified by match to protein family HMM PF00874; match to protein family HMM PF05043; putative transcriptional regulator 2276386 3913105 SAUSA300_2106 Staphylococcus aureus subsp. aureus USA300_FPR3757 putative transcriptional regulator YP_494752.1 2274254 D 451515 CDS YP_494753.1 87161442 3914115 2276398..2276832 1 NC_007793.1 identified by match to protein family HMM PF00359; PTS system, mannitol specific IIA component 2276832 mtlA 3914115 mtlA Staphylococcus aureus subsp. aureus USA300_FPR3757 PTS system, mannitol specific IIA component YP_494753.1 2276398 D 451515 CDS YP_494754.1 87160335 3915110 2276832..2277938 1 NC_007793.1 identified by match to protein family HMM PF01232; match to protein family HMM PF08125; mannitol-1-phosphate 5-dehydrogenase 2277938 mtlD 3915110 mtlD Staphylococcus aureus subsp. aureus USA300_FPR3757 mannitol-1-phosphate 5-dehydrogenase YP_494754.1 2276832 D 451515 CDS YP_494755.1 87161918 3913009 complement(2278257..2282138) 1 NC_007793.1 identified by match to protein family HMM PF07564; match to protein family HMM TIGR01167; truncated FmtB protein 2282138 fmtB 3913009 fmtB Staphylococcus aureus subsp. aureus USA300_FPR3757 truncated FmtB protein YP_494755.1 2278257 R 451515 CDS YP_494756.1 87161033 3912878 complement(2282385..2285693) 1 NC_007793.1 identified by match to protein family HMM PF04650; match to protein family HMM PF07564; match to protein family HMM TIGR01168; truncated FmtB protein 2285693 fmtB 3912878 fmtB Staphylococcus aureus subsp. aureus USA300_FPR3757 truncated FmtB protein YP_494756.1 2282385 R 451515 CDS YP_494757.1 87160822 3913543 complement(2285970..2287325) 1 NC_007793.1 catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; phosphoglucosamine mutase 2287325 glmM 3913543 glmM Staphylococcus aureus subsp. aureus USA300_FPR3757 phosphoglucosamine mutase YP_494757.1 2285970 R 451515 CDS YP_494758.1 87159938 3914984 complement(2287352..2288284) 1 NC_007793.1 identified by match to protein family HMM PF07949; hypothetical protein 2288284 3914984 SAUSA300_2112 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494758.1 2287352 R 451515 CDS YP_494759.1 87162267 3913185 complement(2288286..2289095) 1 NC_007793.1 identified by match to protein family HMM PF02457; match to protein family HMM TIGR00159; hypothetical protein 2289095 3913185 SAUSA300_2113 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494759.1 2288286 R 451515 CDS YP_494760.1 87161396 3914166 complement(2289284..2290192) 1 NC_007793.1 identified by match to protein family HMM PF00491; match to protein family HMM TIGR01229; arginase 2290192 rocF 3914166 rocF Staphylococcus aureus subsp. aureus USA300_FPR3757 arginase YP_494760.1 2289284 R 451515 CDS YP_494761.1 87161892 3914403 2290382..2291620 1 NC_007793.1 identified by match to protein family HMM PF01610; IS1181, transposase 2291620 tnp 3914403 tnp Staphylococcus aureus subsp. aureus USA300_FPR3757 IS1181, transposase YP_494761.1 2290382 D 451515 CDS YP_494762.1 87160570 3914996 complement(2298031..2299035) 1 NC_007793.1 ATP-binding Mrp/Nbp35 family protein 2299035 3914996 SAUSA300_2125 Staphylococcus aureus subsp. aureus USA300_FPR3757 ATP-binding Mrp/Nbp35 family protein YP_494762.1 2298031 R 451515 CDS YP_494763.1 87160025 3913346 complement(2299243..2300685) 1 NC_007793.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711; EmrB/QacA family drug resistance transporter 2300685 3913346 SAUSA300_2126 Staphylococcus aureus subsp. aureus USA300_FPR3757 EmrB/QacA family drug resistance transporter YP_494763.1 2299243 R 451515 CDS YP_494764.1 87162025 3914282 complement(2301007..2301480) 1 NC_007793.1 hypothetical protein 2301480 3914282 SAUSA300_2127 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494764.1 2301007 R 451515 CDS YP_494765.1 87161456 3914047 complement(2301579..2302922) 1 NC_007793.1 identified by match to protein family HMM PF07690; putative drug transporter 2302922 3914047 SAUSA300_2128 Staphylococcus aureus subsp. aureus USA300_FPR3757 putative drug transporter YP_494765.1 2301579 R 451515 CDS YP_494766.1 87161586 3913655 complement(2303099..2303782) 1 NC_007793.1 identified by match to protein family HMM PF03006; match to protein family HMM TIGR01065; putative hemolysin III 2303782 3913655 SAUSA300_2129 Staphylococcus aureus subsp. aureus USA300_FPR3757 putative hemolysin III YP_494766.1 2303099 R 451515 CDS YP_494767.1 87161976 3914488 complement(2303801..2304988) 1 NC_007793.1 identified by match to protein family HMM PF01704; UTP-glucose-1-phosphate uridylyltransferase family protein 2304988 3914488 SAUSA300_2130 Staphylococcus aureus subsp. aureus USA300_FPR3757 UTP-glucose-1-phosphate uridylyltransferase family protein YP_494767.1 2303801 R 451515 CDS YP_494768.1 87160134 3912987 complement(2305032..2305547) 1 NC_007793.1 identified by match to protein family HMM PF04307; hypothetical protein 2305547 3912987 SAUSA300_2131 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494768.1 2305032 R 451515 CDS YP_494769.1 87160537 3914017 2305724..2305984 1 NC_007793.1 hypothetical protein 2305984 3914017 SAUSA300_2132 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494769.1 2305724 D 451515 CDS YP_494770.1 87160653 3913977 complement(2306116..2307432) 1 NC_007793.1 identified by match to protein family HMM PF07670; transporter gate domain-containing protein 2307432 3913977 SAUSA300_2133 Staphylococcus aureus subsp. aureus USA300_FPR3757 transporter gate domain-containing protein YP_494770.1 2306116 R 451515 CDS YP_494771.1 87161036 3912881 complement(2307722..2308690) 1 NC_007793.1 identified by match to protein family HMM PF01032; iron compound ABC transporter permease 2308690 3912881 SAUSA300_2134 Staphylococcus aureus subsp. aureus USA300_FPR3757 iron compound ABC transporter permease YP_494771.1 2307722 R 451515 CDS YP_494772.1 87160945 3913785 complement(2308687..2309718) 1 NC_007793.1 identified by match to protein family HMM PF01032; iron compound ABC transporter permease 2309718 3913785 SAUSA300_2135 Staphylococcus aureus subsp. aureus USA300_FPR3757 iron compound ABC transporter permease YP_494772.1 2308687 R 451515 CDS YP_494773.1 87160323 3915398 complement(2309730..2310713) 1 NC_007793.1 identified by match to protein family HMM PF01497; iron compound ABC transporter iron compound-binding protein 2310713 3915398 SAUSA300_2136 Staphylococcus aureus subsp. aureus USA300_FPR3757 iron compound ABC transporter iron compound-binding protein YP_494773.1 2309730 R 451515 CDS YP_494774.1 87161431 3914080 complement(2311105..2312175) 1 NC_007793.1 identified by match to protein family HMM PF01168; hypothetical protein 2312175 3914080 SAUSA300_2137 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494774.1 2311105 R 451515 CDS YP_494775.1 87160712 3912827 complement(2312182..2313939) 1 NC_007793.1 identified by match to protein family HMM PF04183; hypothetical protein 2313939 3912827 SAUSA300_2138 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494775.1 2312182 R 451515 CDS YP_494776.1 87160600 3915219 complement(2313926..2315119) 1 NC_007793.1 identified by match to protein family HMM PF05977; match to protein family HMM PF07690; putative transporter 2315119 3915219 SAUSA300_2139 Staphylococcus aureus subsp. aureus USA300_FPR3757 putative transporter YP_494776.1 2313926 R 451515 CDS YP_494777.1 87160064 3913288 2315221..2317197 1 NC_007793.1 identified by match to protein family HMM PF04183; hypothetical protein 2317197 3913288 SAUSA300_2140 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494777.1 2315221 D 451515 CDS YP_494778.1 87162258 3913176 complement(2319313..2319822) 1 NC_007793.1 identified by match to protein family HMM PF03780; alkaline shock protein 23 2319822 asp23 3913176 asp23 Staphylococcus aureus subsp. aureus USA300_FPR3757 alkaline shock protein 23 YP_494778.1 2319313 R 451515 CDS YP_494779.1 87161821 3914657 complement(2319885..2320124) 1 NC_007793.1 hypothetical protein 2320124 3914657 SAUSA300_2143 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494779.1 2319885 R 451515 CDS YP_494780.1 87161087 3914274 complement(2320137..2320685) 1 NC_007793.1 hypothetical protein 2320685 3914274 SAUSA300_2144 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494780.1 2320137 R 451515 CDS YP_494781.1 87160721 3912836 complement(2320848..2322410) 1 NC_007793.1 identified by match to protein family HMM PF02028; match to protein family HMM TIGR00842; glycine betaine transporter 2322410 3912836 SAUSA300_2145 Staphylococcus aureus subsp. aureus USA300_FPR3757 glycine betaine transporter YP_494781.1 2320848 R 451515 CDS YP_494782.1 87160165 3914517 complement(2322717..2323718) 1 NC_007793.1 identified by match to protein family HMM PF00107; alcohol dehydrogenase, zinc-containing 2323718 3914517 SAUSA300_2146 Staphylococcus aureus subsp. aureus USA300_FPR3757 alcohol dehydrogenase, zinc-containing YP_494782.1 2322717 R 451515 CDS YP_494783.1 87162223 3913998 complement(2323952..2324953) 1 NC_007793.1 identified by match to protein family HMM PF00107; alcohol dehydrogenase, zinc-containing 2324953 3913998 SAUSA300_2147 Staphylococcus aureus subsp. aureus USA300_FPR3757 alcohol dehydrogenase, zinc-containing YP_494783.1 2323952 R 451515 CDS YP_494784.1 87161658 3913160 complement(2325236..2326105) 1 NC_007793.1 identified by match to protein family HMM PF06028; hypothetical protein 2326105 3913160 SAUSA300_2148 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494784.1 2325236 R 451515 CDS YP_494785.1 87161282 3915253 complement(2326371..2327783) 1 NC_007793.1 catalyzes the formation of 6-phospho-galactose from a 6-phospho-beta-galactoside; 6-phospho-beta-galactosidase 2327783 lacG 3915253 lacG Staphylococcus aureus subsp. aureus USA300_FPR3757 6-phospho-beta-galactosidase YP_494785.1 2326371 R 451515 CDS YP_494786.1 87160371 3913245 complement(2327801..2329513) 1 NC_007793.1 identified by match to protein family HMM PF02302; match to protein family HMM PF02378; match to protein family HMM TIGR00394; match to protein family HMM TIGR00410; match to protein family HMM TIGR00853; PTS system, lactose-specific IIBC component 2329513 lacE 3913245 lacE Staphylococcus aureus subsp. aureus USA300_FPR3757 PTS system, lactose-specific IIBC component YP_494786.1 2327801 R 451515 CDS YP_494787.1 87160194 3913262 complement(2329519..2329830) 1 NC_007793.1 identified by match to protein family HMM PF02255; match to protein family HMM TIGR00823; PTS system, lactose-specific IIA component 2329830 lacF 3913262 lacF Staphylococcus aureus subsp. aureus USA300_FPR3757 PTS system, lactose-specific IIA component YP_494787.1 2329519 R 451515 CDS YP_494788.1 87159964 3913851 complement(2329852..2330832) 1 NC_007793.1 catalyzes the reversible reaction of dihydroxyacetone phosphate with glyceraldehyde 3-phosphate to produce tagatose 1,6-bisphosphate; in Streptococcus pyogenes there are two paralogs of tagatose-bisphosphate aldolase, encoded by lacD1 and lacD2; expression of lacD1 is highly regulated by environmental conditions while lacD2 specializes in an efficient utilization of carbohydrate sources; tagatose 1,6-diphosphate aldolase 2330832 lacD 3913851 lacD Staphylococcus aureus subsp. aureus USA300_FPR3757 tagatose 1,6-diphosphate aldolase YP_494788.1 2329852 R 451515 CDS YP_494789.1 87161951 3913708 complement(2330836..2331768) 1 NC_007793.1 catalyzes the formation of tagatose 1,6-bisphosphate from tagatose 6-phosphate and ATP; tagatose-6-phosphate kinase 2331768 lacC 3913708 lacC Staphylococcus aureus subsp. aureus USA300_FPR3757 tagatose-6-phosphate kinase YP_494789.1 2330836 R 451515 CDS YP_494790.1 87161725 3915291 complement(2331781..2332296) 1 NC_007793.1 catalyzes the interconversion of galactose 6-phosphate to tagatose 6-phosphate; galactose-6-phosphate isomerase subunit LacB 2332296 lacB 3915291 lacB Staphylococcus aureus subsp. aureus USA300_FPR3757 galactose-6-phosphate isomerase subunit LacB YP_494790.1 2331781 R 451515 CDS YP_494791.1 87161155 3914500 complement(2332312..2332740) 1 NC_007793.1 catalyzes the interconversion of galactose 6-phosphate to tagatose 6-phosphate; tagatose pathway for galactose utilization; galactose-6-phosphate isomerase subunit LacA 2332740 lacA 3914500 lacA Staphylococcus aureus subsp. aureus USA300_FPR3757 galactose-6-phosphate isomerase subunit LacA YP_494791.1 2332312 R 451515 CDS YP_494792.1 87160275 3913677 complement(2333108..2333863) 1 NC_007793.1 identified by match to protein family HMM PF00455; match to protein family HMM PF08220; lactose phosphotransferase system repressor 2333863 3913677 SAUSA300_2156 Staphylococcus aureus subsp. aureus USA300_FPR3757 lactose phosphotransferase system repressor YP_494792.1 2333108 R 451515 CDS YP_494793.1 87161322 3915293 2334114..2334845 1 NC_007793.1 Modulates the activities of several enzymes which are inactive in their acetylated form; NAD-dependent deacetylase 2334845 3915293 SAUSA300_2157 Staphylococcus aureus subsp. aureus USA300_FPR3757 NAD-dependent deacetylase YP_494793.1 2334114 D 451515 CDS YP_494794.1 87160429 3913147 complement(2335136..2335570) 1 NC_007793.1 hypothetical protein 2335570 3913147 SAUSA300_2158 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494794.1 2335136 R 451515 CDS YP_494795.1 87159902 3914948 complement(2336350..2337198) 1 NC_007793.1 identified by match to protein family HMM PF00248; aldo/keto reductase family protein 2337198 3914948 SAUSA300_2159 Staphylococcus aureus subsp. aureus USA300_FPR3757 aldo/keto reductase family protein YP_494795.1 2336350 R 451515 CDS YP_494796.1 87161894 3914405 complement(2337268..2337684) 1 NC_007793.1 identified by match to protein family HMM PF00376; MerR family transcriptional regulator 2337684 3914405 SAUSA300_2160 Staphylococcus aureus subsp. aureus USA300_FPR3757 MerR family transcriptional regulator YP_494796.1 2337268 R 451515 CDS YP_494797.1 87161621 3913476 2338092..2340515 1 NC_007793.1 identified by match to protein family HMM PF02278; match to protein family HMM PF02884; match to protein family HMM PF08124; hyaluronate lyase 2340515 hysA 3913476 hysA Staphylococcus aureus subsp. aureus USA300_FPR3757 hyaluronate lyase YP_494797.1 2338092 D 451515 CDS YP_494798.1 87160662 3913986 complement(2340575..2341429) 1 NC_007793.1 identified by match to protein family HMM PF01551; M23/M37 peptidase domain-containing protein 2341429 3913986 SAUSA300_2162 Staphylococcus aureus subsp. aureus USA300_FPR3757 M23/M37 peptidase domain-containing protein YP_494798.1 2340575 R 451515 CDS YP_494799.1 87161752 3913897 complement(2341640..2342455) 1 NC_007793.1 identified by match to protein family HMM PF05116; match to protein family HMM TIGR01484; hypothetical protein 2342455 3913897 SAUSA300_2163 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494799.1 2341640 R 451515 CDS YP_494800.1 87162347 3913831 2342749..2343174 1 NC_007793.1 identified by match to protein family HMM PF03642; hypothetical protein 2343174 3913831 SAUSA300_2164 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494800.1 2342749 D 451515 CDS YP_494801.1 87160350 3915125 complement(2343538..2344242) 1 NC_007793.1 identified by match to protein family HMM PF03306; match to protein family HMM TIGR01252; alpha-acetolactate decarboxylase 2344242 budA 3915125 budA Staphylococcus aureus subsp. aureus USA300_FPR3757 alpha-acetolactate decarboxylase YP_494801.1 2343538 R 451515 CDS YP_494802.1 87160944 3913784 complement(2344279..2345943) 1 NC_007793.1 catalyzes the formation of 2-acetolactate from pyruvate in stationary phase; acetolactate synthase 2345943 alsS 3913784 alsS Staphylococcus aureus subsp. aureus USA300_FPR3757 acetolactate synthase YP_494802.1 2344279 R 451515 CDS YP_494803.1 87160340 3915115 complement(2347133..2348539) 1 NC_007793.1 hypothetical protein 2348539 3915115 SAUSA300_2167 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494803.1 2347133 R 451515 CDS YP_494804.1 87162361 3914210 complement(2348668..2349804) 1 NC_007793.1 identified by match to protein family HMM PF07724; hypothetical protein 2349804 3914210 SAUSA300_2168 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494804.1 2348668 R 451515 CDS YP_494805.1 87160484 3913339 complement(2349805..2350596) 1 NC_007793.1 hypothetical protein 2350596 3913339 SAUSA300_2169 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494805.1 2349805 R 451515 CDS YP_494806.1 87161732 3913018 complement(2352541..2352939) 1 NC_007793.1 forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 2352939 rpsI 3913018 rpsI Staphylococcus aureus subsp. aureus USA300_FPR3757 30S ribosomal protein S9 YP_494806.1 2352541 R 451515 CDS YP_494807.1 87161168 3914742 complement(2352953..2353390) 1 NC_007793.1 in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 2353390 rplM 3914742 rplM Staphylococcus aureus subsp. aureus USA300_FPR3757 50S ribosomal protein L13 YP_494807.1 2352953 R 451515 CDS YP_494808.1 87160970 3915365 complement(2353630..2354433) 1 NC_007793.1 mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability; tRNA pseudouridine synthase A 2354433 truA 3915365 truA Staphylococcus aureus subsp. aureus USA300_FPR3757 tRNA pseudouridine synthase A YP_494808.1 2353630 R 451515 CDS YP_494809.1 87160748 3913411 complement(2354438..2355244) 1 NC_007793.1 identified by match to protein family HMM PF02361; cobalt transport family protein 2355244 3913411 SAUSA300_2174 Staphylococcus aureus subsp. aureus USA300_FPR3757 cobalt transport family protein YP_494809.1 2354438 R 451515 CDS YP_494810.1 87160333 3915408 complement(2355234..2356094) 1 NC_007793.1 with CbiNQ forms the ABC transporter for cobalt import; Staphylococcus has two adjacent copies of this gene; cobalt transporter ATP-binding subunit 2356094 cbiO 3915408 cbiO Staphylococcus aureus subsp. aureus USA300_FPR3757 cobalt transporter ATP-binding subunit YP_494810.1 2355234 R 451515 CDS YP_494811.1 87160892 3912969 complement(2356091..2356900) 1 NC_007793.1 with CbiNQ forms the ABC transporter for cobalt import; Staphylococcus has two adjacent copies of this gene; cobalt transporter ATP-binding subunit 2356900 cbiO 3912969 cbiO Staphylococcus aureus subsp. aureus USA300_FPR3757 cobalt transporter ATP-binding subunit YP_494811.1 2356091 R 451515 CDS YP_494812.1 87161671 3914436 complement(2357438..2357806) 1 NC_007793.1 is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 2357806 rplQ 3914436 rplQ Staphylococcus aureus subsp. aureus USA300_FPR3757 50S ribosomal protein L17 YP_494812.1 2357438 R 451515 CDS YP_494813.1 87162055 3914331 complement(2357823..2358767) 1 NC_007793.1 catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha 2358767 rpoA 3914331 rpoA Staphylococcus aureus subsp. aureus USA300_FPR3757 DNA-directed RNA polymerase subunit alpha YP_494813.1 2357823 R 451515 CDS YP_494814.1 87162098 3913092 complement(2358842..2359231) 1 NC_007793.1 located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 2359231 rpsK 3913092 rpsK Staphylococcus aureus subsp. aureus USA300_FPR3757 30S ribosomal protein S11 YP_494814.1 2358842 R 451515 CDS YP_494815.1 87159948 3913835 complement(2359255..2359620) 1 NC_007793.1 located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 2359620 rpsM 3913835 rpsM Staphylococcus aureus subsp. aureus USA300_FPR3757 30S ribosomal protein S13 YP_494815.1 2359255 R 451515 CDS YP_494816.1 87160226 3913764 complement(2359643..2359756) 1 NC_007793.1 smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif; 50S ribosomal protein L36 2359756 rpmJ 3913764 rpmJ Staphylococcus aureus subsp. aureus USA300_FPR3757 50S ribosomal protein L36 YP_494816.1 2359643 R 451515 CDS YP_494817.1 87161079 3914265 complement(2359788..2360006) 1 NC_007793.1 stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 2360006 infA 3914265 infA Staphylococcus aureus subsp. aureus USA300_FPR3757 translation initiation factor IF-1 YP_494817.1 2359788 R 451515 CDS YP_494818.1 87161373 3914772 complement(2360199..2360846) 1 NC_007793.1 essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; adenylate kinase 2360846 adk 3914772 adk Staphylococcus aureus subsp. aureus USA300_FPR3757 adenylate kinase YP_494818.1 2360199 R 451515 CDS YP_494819.1 87162195 3914838 complement(2360863..2362155) 1 NC_007793.1 forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY 2362155 secY 3914838 secY Staphylococcus aureus subsp. aureus USA300_FPR3757 preprotein translocase subunit SecY YP_494819.1 2360863 R 451515 CDS YP_494820.1 87161362 3914761 complement(2362155..2362595) 1 NC_007793.1 late assembly protein; 50S ribosomal protein L15 2362595 rplO 3914761 rplO Staphylococcus aureus subsp. aureus USA300_FPR3757 50S ribosomal protein L15 YP_494820.1 2362155 R 451515 CDS YP_494821.1 87162067 3914246 complement(2362612..2362791) 1 NC_007793.1 L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7; 50S ribosomal protein L30 2362791 rpmD 3914246 rpmD Staphylococcus aureus subsp. aureus USA300_FPR3757 50S ribosomal protein L30 YP_494821.1 2362612 R 451515 CDS YP_494822.1 87159908 3914954 complement(2362808..2363308) 1 NC_007793.1 located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 2363308 rpsE 3914954 rpsE Staphylococcus aureus subsp. aureus USA300_FPR3757 30S ribosomal protein S5 YP_494822.1 2362808 R 451515 CDS YP_494823.1 87160596 3915215 complement(2363329..2363688) 1 NC_007793.1 binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 2363688 rplR 3915215 rplR Staphylococcus aureus subsp. aureus USA300_FPR3757 50S ribosomal protein L18 YP_494823.1 2363329 R 451515 CDS YP_494824.1 87160935 3914373 complement(2363719..2364255) 1 NC_007793.1 ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 2364255 rplF 3914373 rplF Staphylococcus aureus subsp. aureus USA300_FPR3757 50S ribosomal protein L6 YP_494824.1 2363719 R 451515 CDS YP_494825.1 87162226 3914001 complement(2364280..2364678) 1 NC_007793.1 binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 2364678 rpsH 3914001 rpsH Staphylococcus aureus subsp. aureus USA300_FPR3757 30S ribosomal protein S8 YP_494825.1 2364280 R 451515 CDS YP_494826.2 162138571 3914991 complement(2364710..2364895) 1 NC_007793.1 located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group appear to contain the zinc-binding motif; 30S ribosomal protein S14 2364895 rpsN 3914991 rpsN Staphylococcus aureus subsp. aureus USA300_FPR3757 30S ribosomal protein S14 YP_494826.2 2364710 R 451515 CDS YP_494827.1 87160361 3913235 complement(2364918..2365457) 1 NC_007793.1 part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 2365457 rplE 3913235 rplE Staphylococcus aureus subsp. aureus USA300_FPR3757 50S ribosomal protein L5 YP_494827.1 2364918 R 451515 CDS YP_494828.1 87161395 3914165 complement(2365484..2365801) 1 NC_007793.1 assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 2365801 rplX 3914165 rplX Staphylococcus aureus subsp. aureus USA300_FPR3757 50S ribosomal protein L24 YP_494828.1 2365484 R 451515 CDS YP_494829.1 87162129 3913593 complement(2365837..2366205) 1 NC_007793.1 binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 2366205 rplN 3913593 rplN Staphylococcus aureus subsp. aureus USA300_FPR3757 50S ribosomal protein L14 YP_494829.1 2365837 R 451515 CDS YP_494830.1 87160555 3913510 complement(2366237..2366500) 1 NC_007793.1 primary binding protein; helps mediate assembly; involved in translation fidelity; 30S ribosomal protein S17 2366500 rpsQ 3913510 rpsQ Staphylococcus aureus subsp. aureus USA300_FPR3757 30S ribosomal protein S17 YP_494830.1 2366237 R 451515 CDS YP_494831.1 87161481 3914223 complement(2366524..2366745) 1 NC_007793.1 one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29 2366745 rpmC 3914223 rpmC Staphylococcus aureus subsp. aureus USA300_FPR3757 50S ribosomal protein L29 YP_494831.1 2366524 R 451515 CDS YP_494832.1 87162332 3913816 complement(2366723..2367157) 1 NC_007793.1 located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 2367157 rplP 3913816 rplP Staphylococcus aureus subsp. aureus USA300_FPR3757 50S ribosomal protein L16 YP_494832.1 2366723 R 451515 CDS YP_494833.1 87160014 3912925 complement(2367160..2367813) 1 NC_007793.1 forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 2367813 rpsC 3912925 rpsC Staphylococcus aureus subsp. aureus USA300_FPR3757 30S ribosomal protein S3 YP_494833.1 2367160 R 451515 CDS YP_494834.1 87160513 3914725 complement(2367837..2368190) 1 NC_007793.1 binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 2368190 rplV 3914725 rplV Staphylococcus aureus subsp. aureus USA300_FPR3757 50S ribosomal protein L22 YP_494834.1 2367837 R 451515 CDS YP_494835.1 87162298 3913607 complement(2368219..2368497) 1 NC_007793.1 protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 2368497 rpsS 3913607 rpsS Staphylococcus aureus subsp. aureus USA300_FPR3757 30S ribosomal protein S19 YP_494835.1 2368219 R 451515 CDS YP_494836.1 87162334 3913818 complement(2368564..2369397) 1 NC_007793.1 one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 2369397 rplB 3913818 rplB Staphylococcus aureus subsp. aureus USA300_FPR3757 50S ribosomal protein L2 YP_494836.1 2368564 R 451515 CDS YP_494837.1 87160873 3914145 complement(2369430..2369705) 1 NC_007793.1 binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 2369705 rplW 3914145 rplW Staphylococcus aureus subsp. aureus USA300_FPR3757 50S ribosomal protein L23 YP_494837.1 2369430 R 451515 CDS YP_494838.1 87160155 3913125 complement(2369705..2370328) 1 NC_007793.1 L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 2370328 rplD 3913125 rplD Staphylococcus aureus subsp. aureus USA300_FPR3757 50S ribosomal protein L4 YP_494838.1 2369705 R 451515 CDS YP_494839.1 87161988 3914885 complement(2370355..2371017) 1 NC_007793.1 binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 2371017 rplC 3914885 rplC Staphylococcus aureus subsp. aureus USA300_FPR3757 50S ribosomal protein L3 YP_494839.1 2370355 R 451515 CDS YP_494840.1 87162279 3915319 complement(2371045..2371353) 1 NC_007793.1 NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 2371353 rpsJ 3915319 rpsJ Staphylococcus aureus subsp. aureus USA300_FPR3757 30S ribosomal protein S10 YP_494840.1 2371045 R 451515 CDS YP_494841.1 87160085 3914918 2371710..2372099 1 NC_007793.1 hypothetical protein 2372099 3914918 SAUSA300_2206 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494841.1 2371710 D 451515 CDS YP_494842.1 87160814 3913046 complement(2372291..2373469) 1 NC_007793.1 identified by match to protein family HMM PF00860; match to protein family HMM PF00916; xanthine/uracil permease family protein 2373469 3913046 SAUSA300_2207 Staphylococcus aureus subsp. aureus USA300_FPR3757 xanthine/uracil permease family protein YP_494842.1 2372291 R 451515 CDS YP_494843.1 87161193 3914904 complement(2373738..2375873) 1 NC_007793.1 decatenates replicating daughter chromosomes; DNA topoisomerase III 2375873 topB 3914904 topB Staphylococcus aureus subsp. aureus USA300_FPR3757 DNA topoisomerase III YP_494843.1 2373738 R 451515 CDS YP_494844.1 87161171 3914745 2376060..2376947 1 NC_007793.1 identified by match to protein family HMM PF00583; hypothetical protein 2376947 3914745 SAUSA300_2209 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494844.1 2376060 D 451515 CDS YP_494845.1 87161388 3914158 2377128..2377991 1 NC_007793.1 identified by match to protein family HMM PF06800; glucose uptake protein 2377991 glcU 3914158 glcU Staphylococcus aureus subsp. aureus USA300_FPR3757 glucose uptake protein YP_494845.1 2377128 D 451515 CDS YP_494846.1 87161553 3915168 complement(2378410..2379300) 1 NC_007793.1 identified by match to protein family HMM PF03547; hypothetical protein 2379300 3915168 SAUSA300_2211 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494846.1 2378410 R 451515 CDS YP_494847.1 87161111 3914337 2379451..2379615 1 NC_007793.1 hypothetical protein 2379615 3914337 SAUSA300_2212 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494847.1 2379451 D 451515 CDS YP_494848.1 87160279 3913486 complement(2380364..2383531) 1 NC_007793.1 identified by match to protein family HMM PF00873; AcrB/AcrD/AcrF family protein 2383531 3913486 SAUSA300_2213 Staphylococcus aureus subsp. aureus USA300_FPR3757 AcrB/AcrD/AcrF family protein YP_494848.1 2380364 R 451515 CDS YP_494849.1 87161975 3914487 complement(2383648..2384913) 1 NC_007793.1 identified by match to protein family HMM PF02388; FmhB protein 2384913 3914487 SAUSA300_2214 Staphylococcus aureus subsp. aureus USA300_FPR3757 FmhB protein YP_494849.1 2383648 R 451515 CDS YP_494850.1 87160067 3913291 complement(2385545..2386309) 1 NC_007793.1 hypothetical protein 2386309 3913291 SAUSA300_2215 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494850.1 2385545 R 451515 CDS YP_494851.1 87160317 3915392 2386471..2386911 1 NC_007793.1 identified by match to protein family HMM PF01047; MarR family transcriptional regulator 2386911 3915392 SAUSA300_2216 Staphylococcus aureus subsp. aureus USA300_FPR3757 MarR family transcriptional regulator YP_494851.1 2386471 D 451515 CDS YP_494852.1 87162185 3913882 2386904..2388115 1 NC_007793.1 identified by match to protein family HMM PF07690; putative drug transporter 2388115 3913882 SAUSA300_2217 Staphylococcus aureus subsp. aureus USA300_FPR3757 putative drug transporter YP_494852.1 2386904 D 451515 CDS YP_494853.1 87161800 3914043 complement(2388217..2388567) 1 NC_007793.1 identified by match to protein family HMM PF01047; match to protein family HMM TIGR01889; hypothetical protein 2388567 3914043 SAUSA300_2218 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494853.1 2388217 R 451515 CDS YP_494854.1 87161067 3912777 complement(2389258..2390280) 1 NC_007793.1 identified by match to protein family HMM PF04055; match to protein family HMM PF06463; match to protein family HMM TIGR02666; molybdenum cofactor biosynthesis protein A 2390280 moaA 3912777 moaA Staphylococcus aureus subsp. aureus USA300_FPR3757 molybdenum cofactor biosynthesis protein A YP_494854.1 2389258 R 451515 CDS YP_494855.1 87161876 3914564 complement(2390300..2390899) 1 NC_007793.1 in Escherichia coli MobA links a guanosine 5'-phosphate to molydopterin to form molybdopterin guanine dinucleotide during molybdenum cofactor biosynthesis; molybdopterin-guanine dinucleotide biosynthesis protein MobA 2390899 mobA 3914564 mobA Staphylococcus aureus subsp. aureus USA300_FPR3757 molybdopterin-guanine dinucleotide biosynthesis protein MobA YP_494855.1 2390300 R 451515 CDS YP_494856.1 87160189 3913257 complement(2390906..2391139) 1 NC_007793.1 identified by match to protein family HMM PF02597; match to protein family HMM TIGR01682; molybdopterin converting factor, subunit 1 2391139 moaD 3913257 moaD Staphylococcus aureus subsp. aureus USA300_FPR3757 molybdopterin converting factor, subunit 1 YP_494856.1 2390906 R 451515 CDS YP_494857.1 87161879 3914567 complement(2391145..2391591) 1 NC_007793.1 identified by match to protein family HMM PF02391; molybdopterin converting factor, subunit 2 2391591 moaE 3914567 moaE Staphylococcus aureus subsp. aureus USA300_FPR3757 molybdopterin converting factor, subunit 2 YP_494857.1 2391145 R 451515 CDS YP_494858.1 87160185 3913253 complement(2391605..2392090) 1 NC_007793.1 identified by match to protein family HMM PF03205; match to protein family HMM TIGR00176; molybdopterin-guanine dinucleotide biosynthesis protein B 2392090 mobB 3913253 mobB Staphylococcus aureus subsp. aureus USA300_FPR3757 molybdopterin-guanine dinucleotide biosynthesis protein B YP_494858.1 2391605 R 451515 CDS YP_494859.1 87160744 3913407 complement(2392087..2393346) 1 NC_007793.1 identified by match to protein family HMM PF00994; match to protein family HMM PF03453; match to protein family HMM PF03454; match to protein family HMM TIGR00177; molybdopterin biosynthesis protein A 2393346 moeA 3913407 moeA Staphylococcus aureus subsp. aureus USA300_FPR3757 molybdopterin biosynthesis protein A YP_494859.1 2392087 R 451515 CDS YP_494860.1 87161640 3913690 2393409..2393903 1 NC_007793.1 MoaC; along with MoaA is involved in conversion of a guanosine derivative into molybdopterin precursor Z; involved in molybdenum cofactor biosynthesis; molybdenum cofactor biosynthesis protein MoaC 2393903 moaC 3913690 moaC Staphylococcus aureus subsp. aureus USA300_FPR3757 molybdenum cofactor biosynthesis protein MoaC YP_494860.1 2393409 D 451515 CDS YP_494861.1 87162232 3914857 complement(2393905..2394411) 1 NC_007793.1 identified by match to protein family HMM PF00994; match to protein family HMM TIGR00177; molybdenum cofactor biosynthesis protein B 2394411 moaB 3914857 moaB Staphylococcus aureus subsp. aureus USA300_FPR3757 molybdenum cofactor biosynthesis protein B YP_494861.1 2393905 R 451515 CDS YP_494862.1 87160503 3915094 complement(2394442..2395446) 1 NC_007793.1 identified by match to protein family HMM PF00899; match to protein family HMM PF05237; molybdopterin biosynthesis protein B 2395446 moeB 3915094 moeB Staphylococcus aureus subsp. aureus USA300_FPR3757 molybdopterin biosynthesis protein B YP_494862.1 2394442 R 451515 CDS YP_494863.1 87161241 3914795 complement(2395616..2396221) 1 NC_007793.1 identified by match to protein family HMM PF00005; molybdenum ABC transporter ATP-binding protein ModC 2396221 modC 3914795 modC Staphylococcus aureus subsp. aureus USA300_FPR3757 molybdenum ABC transporter ATP-binding protein ModC YP_494863.1 2395616 R 451515 CDS YP_494864.1 87161820 3914656 complement(2396222..2396893) 1 NC_007793.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR02141; molybdenum ABC transporter permease ModB 2396893 modB 3914656 modB Staphylococcus aureus subsp. aureus USA300_FPR3757 molybdenum ABC transporter permease ModB YP_494864.1 2396222 R 451515 CDS YP_494865.1 87160588 3915207 complement(2396907..2397689) 1 NC_007793.1 identified by match to protein family HMM PF01547; match to protein family HMM TIGR01256; molybdenum ABC transporter molybdenum-binding protein ModA 2397689 modA 3915207 modA Staphylococcus aureus subsp. aureus USA300_FPR3757 molybdenum ABC transporter molybdenum-binding protein ModA YP_494865.1 2396907 R 451515 CDS YP_494866.1 87162299 3913608 2397979..2398776 1 NC_007793.1 involved in the production or activity of formate dehydrogenase-H which is active when nitrate is not present during anaerobic growth; formate dehydrogenase accessory protein 2398776 fdhD 3913608 fdhD Staphylococcus aureus subsp. aureus USA300_FPR3757 formate dehydrogenase accessory protein YP_494866.1 2397979 D 451515 CDS YP_494867.1 87160094 3914927 complement(2398948..2399718) 1 NC_007793.1 identified by match to protein family HMM PF00583; acetyltransferase 2399718 3914927 SAUSA300_2232 Staphylococcus aureus subsp. aureus USA300_FPR3757 acetyltransferase YP_494867.1 2398948 R 451515 CDS YP_494868.1 87161625 3913480 complement(2399790..2400344) 1 NC_007793.1 identified by match to protein family HMM PF02632; BioY family protein 2400344 3913480 SAUSA300_2233 Staphylococcus aureus subsp. aureus USA300_FPR3757 BioY family protein YP_494868.1 2399790 R 451515 CDS YP_494869.1 87161209 3912784 complement(2400465..2401406) 1 NC_007793.1 identified by match to protein family HMM PF01156; inosine-uridine preferring nucleoside hydrolase 2401406 3912784 SAUSA300_2234 Staphylococcus aureus subsp. aureus USA300_FPR3757 inosine-uridine preferring nucleoside hydrolase YP_494869.1 2400465 R 451515 CDS YP_494870.1 87160849 3913395 complement(2401805..2402713) 1 NC_007793.1 identified by match to protein family HMM PF01497; iron compound ABC transporter iron compound-binding protein 2402713 3913395 SAUSA300_2235 Staphylococcus aureus subsp. aureus USA300_FPR3757 iron compound ABC transporter iron compound-binding protein YP_494870.1 2401805 R 451515 CDS YP_494871.1 87161911 3913002 complement(2402927..2404081) 1 NC_007793.1 identified by match to protein family HMM PF02770; match to protein family HMM PF08028; hypothetical protein 2404081 3913002 SAUSA300_2236 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494871.1 2402927 R 451515 CDS YP_494872.1 87161231 3914785 complement(2404298..2405188) 1 NC_007793.1 identified by match to protein family HMM PF03253; putative urea transporter 2405188 3914785 SAUSA300_2237 Staphylococcus aureus subsp. aureus USA300_FPR3757 putative urea transporter YP_494872.1 2404298 R 451515 CDS YP_494873.1 87161108 3914334 2405463..2405765 1 NC_007793.1 UreA, with UreB and UreC catalyzes the hydrolysis of urea into ammonia and carbon dioxide; nickel metalloenzyme; accessory proteins UreD, UreE, UreF, and UreG are necessary for assembly of the metallocenter; urease subunit gamma 2405765 ureA 3914334 ureA Staphylococcus aureus subsp. aureus USA300_FPR3757 urease subunit gamma YP_494873.1 2405463 D 451515 CDS YP_494874.1 87160432 3912935 2405779..2406189 1 NC_007793.1 ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori and Yersinia enterocolitica the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 UreC (alpha) and 3 UreAB (gamma/beta); in Staphylococcus saprophyticus plays a role in bladder invasiveness and may induce the formation of kidney and bladder stones due to the alkalization of urine; urease subunit beta 2406189 ureB 3912935 ureB Staphylococcus aureus subsp. aureus USA300_FPR3757 urease subunit beta YP_494874.1 2405779 D 451515 CDS YP_494875.1 87162018 3915389 2406186..2407901 1 NC_007793.1 ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 ureC (alpha) and 3 ureAB (gamma/beta) subunits; urease subunit alpha 2407901 ureC 3915389 ureC Staphylococcus aureus subsp. aureus USA300_FPR3757 urease subunit alpha YP_494875.1 2406186 D 451515 CDS YP_494876.1 87161428 3914077 2407914..2408366 1 NC_007793.1 involved in the assembly of the urease metallocenter; possible nickel donor; urease accessory protein UreE 2408366 ureE 3914077 ureE Staphylococcus aureus subsp. aureus USA300_FPR3757 urease accessory protein UreE YP_494876.1 2407914 D 451515 CDS YP_494877.1 87161980 3914877 2408359..2409048 1 NC_007793.1 identified by match to protein family HMM PF01730; urease accessory protein UreF 2409048 ureF 3914877 ureF Staphylococcus aureus subsp. aureus USA300_FPR3757 urease accessory protein UreF YP_494877.1 2408359 D 451515 CDS YP_494878.1 87161408 3914096 2409061..2409675 1 NC_007793.1 identified by match to protein family HMM PF02492; match to protein family HMM TIGR00101; urease accessory protein UreG 2409675 ureG 3914096 ureG Staphylococcus aureus subsp. aureus USA300_FPR3757 urease accessory protein UreG YP_494878.1 2409061 D 451515 CDS YP_494879.1 87160528 3914008 2409675..2410511 1 NC_007793.1 identified by match to protein family HMM PF01774; urease accessory protein UreD 2410511 ureD 3914008 ureD Staphylococcus aureus subsp. aureus USA300_FPR3757 urease accessory protein UreD YP_494879.1 2409675 D 451515 CDS YP_494880.1 87159999 3914427 complement(2410700..2411047) 1 NC_007793.1 identified by match to protein family HMM TIGR01889; accessory regulator R 2411047 3914427 SAUSA300_2245 Staphylococcus aureus subsp. aureus USA300_FPR3757 accessory regulator R YP_494880.1 2410700 R 451515 CDS YP_494881.1 87162374 3913527 complement(2411475..2411801) 1 NC_007793.1 hypothetical protein 2411801 3913527 SAUSA300_2246 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494881.1 2411475 R 451515 CDS YP_494882.1 87161799 3914042 complement(2411865..2412608) 1 NC_007793.1 identified by match to protein family HMM TIGR01889; hypothetical protein 2412608 3914042 SAUSA300_2247 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494882.1 2411865 R 451515 CDS YP_494883.1 87160916 3914354 complement(2412634..2414589) 1 NC_007793.1 identified by match to protein family HMM PF00165; AraC family transcriptional regulator 2414589 3914354 SAUSA300_2248 Staphylococcus aureus subsp. aureus USA300_FPR3757 AraC family transcriptional regulator YP_494883.1 2412634 R 451515 CDS YP_494884.1 87160217 3913090 2415199..2416002 1 NC_007793.1 identified by match to protein family HMM PF05257; secretory antigen precursor SsaA 2416002 ssaA 3913090 ssaA Staphylococcus aureus subsp. aureus USA300_FPR3757 secretory antigen precursor SsaA YP_494884.1 2415199 D 451515 CDS YP_494885.1 87161037 3912882 complement(2416435..2417835) 1 NC_007793.1 identified by match to protein family HMM PF03553; match to protein family HMM TIGR00931; Na+/H+ antiporter NhaC 2417835 nhaC 3912882 nhaC Staphylococcus aureus subsp. aureus USA300_FPR3757 Na+/H+ antiporter NhaC YP_494885.1 2416435 R 451515 CDS YP_494886.1 87160273 3913675 complement(2417930..2419012) 1 NC_007793.1 identified by match to protein family HMM PF01210; match to protein family HMM PF02317; dehydrogenase family protein 2419012 3913675 SAUSA300_2251 Staphylococcus aureus subsp. aureus USA300_FPR3757 dehydrogenase family protein YP_494886.1 2417930 R 451515 CDS YP_494887.1 87160666 3915043 2419260..2419682 1 NC_007793.1 hypothetical protein 2419682 3915043 SAUSA300_2252 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494887.1 2419260 D 451515 CDS YP_494888.1 87159889 3914935 2419919..2420419 1 NC_007793.1 identified by match to protein family HMM PF05257; secretory antigen precursor SsaA 2420419 ssaA 3914935 ssaA Staphylococcus aureus subsp. aureus USA300_FPR3757 secretory antigen precursor SsaA YP_494888.1 2419919 D 451515 CDS YP_494889.1 87162105 3913099 2420781..2421734 1 NC_007793.1 identified by match to protein family HMM PF00389; match to protein family HMM PF02826; glycerate dehydrogenase-like protein 2421734 3913099 SAUSA300_2254 Staphylococcus aureus subsp. aureus USA300_FPR3757 glycerate dehydrogenase-like protein YP_494889.1 2420781 D 451515 CDS YP_494890.1 87161413 3914101 complement(2421826..2422950) 1 NC_007793.1 identified by match to protein family HMM PF01494; hypothetical protein 2422950 3914101 SAUSA300_2255 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494890.1 2421826 R 451515 CDS YP_494891.1 87160294 3913502 complement(2423261..2424037) 1 NC_007793.1 identified by match to protein family HMM PF01832; putative N-acetylmuramoyl-L-alanine amidase 2424037 3913502 SAUSA300_2256 Staphylococcus aureus subsp. aureus USA300_FPR3757 putative N-acetylmuramoyl-L-alanine amidase YP_494891.1 2423261 R 451515 CDS YP_494892.1 87162303 3913612 complement(2424520..2424993) 1 NC_007793.1 identified by match to protein family HMM PF07849; hypothetical protein 2424993 3913612 SAUSA300_2257 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494892.1 2424520 R 451515 CDS YP_494893.1 87161471 3914062 complement(2424993..2427947) 1 NC_007793.1 identified by match to protein family HMM PF00037; match to protein family HMM PF00111; match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; match to protein family HMM TIGR01591; formate dehydrogenase, alpha subunit 2427947 3914062 SAUSA300_2258 Staphylococcus aureus subsp. aureus USA300_FPR3757 formate dehydrogenase, alpha subunit YP_494893.1 2424993 R 451515 CDS YP_494894.1 87160906 3915157 complement(2428549..2429472) 1 NC_007793.1 identified by match to protein family HMM PF03816; match to protein family HMM TIGR00350; putative transcriptional regulator 2429472 3915157 SAUSA300_2259 Staphylococcus aureus subsp. aureus USA300_FPR3757 putative transcriptional regulator YP_494894.1 2428549 R 451515 CDS YP_494895.1 87161229 3914783 complement(2429629..2430426) 1 NC_007793.1 identified by match to protein family HMM PF00459; inositol monophosphatase family protein 2430426 3914783 SAUSA300_2260 Staphylococcus aureus subsp. aureus USA300_FPR3757 inositol monophosphatase family protein YP_494895.1 2429629 R 451515 CDS YP_494896.1 87161961 3914473 2430811..2431503 1 NC_007793.1 identified by match to protein family HMM PF08220; hypothetical protein 2431503 3914473 SAUSA300_2261 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494896.1 2430811 D 451515 CDS YP_494897.1 87161935 3914595 2431859..2432173 1 NC_007793.1 putative transposase 2432173 3914595 SAUSA300_2263 Staphylococcus aureus subsp. aureus USA300_FPR3757 putative transposase YP_494897.1 2431859 D 451515 CDS YP_494898.1 87161170 3914744 complement(2432150..2432887) 1 NC_007793.1 identified by match to protein family HMM PF02517; hypothetical protein 2432887 3914744 SAUSA300_2262 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494898.1 2432150 R 451515 CDS YP_494899.1 87161144 3913733 2433701..2434582 1 NC_007793.1 contains one authenticated frameshift mutation; RpiR family phosphosugar-binding transcriptional regulator 2434582 3913733 SAUSA300_2264 Staphylococcus aureus subsp. aureus USA300_FPR3757 RpiR family phosphosugar-binding transcriptional regulator YP_494899.1 2433701 D 451515 CDS YP_494900.1 87161526 3913200 complement(2434969..2436348) 1 NC_007793.1 identified by match to protein family HMM PF00324; putative amino acid permease 2436348 3913200 SAUSA300_2265 Staphylococcus aureus subsp. aureus USA300_FPR3757 putative amino acid permease YP_494900.1 2434969 R 451515 CDS YP_494901.1 87160138 3912991 2436628..2436984 1 NC_007793.1 hypothetical protein 2436984 3912991 SAUSA300_2266 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494901.1 2436628 D 451515 CDS YP_494902.1 87160378 3912804 complement(2437464..2438099) 1 NC_007793.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; match to protein family HMM TIGR01549; HAD superfamily hydrolase 2438099 3912804 SAUSA300_2267 Staphylococcus aureus subsp. aureus USA300_FPR3757 HAD superfamily hydrolase YP_494902.1 2437464 R 451515 CDS YP_494903.1 87161943 3913700 complement(2438174..2439091) 1 NC_007793.1 identified by match to protein family HMM PF01758; sodium/bile acid symporter family protein 2439091 3913700 SAUSA300_2268 Staphylococcus aureus subsp. aureus USA300_FPR3757 sodium/bile acid symporter family protein YP_494903.1 2438174 R 451515 CDS YP_494904.1 87160640 3915075 2439359..2439889 1 NC_007793.1 identified by similarity to PIR:E90031; hypothetical protein 2439889 3915075 SAUSA300_2269 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494904.1 2439359 D 451515 CDS YP_494905.1 87159935 3914981 complement(2439955..2441559) 1 NC_007793.1 identified by match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR02005; PTS system, arbutin-like IIBC component 2441559 glvC 3914981 glvC Staphylococcus aureus subsp. aureus USA300_FPR3757 PTS system, arbutin-like IIBC component YP_494905.1 2439955 R 451515 CDS YP_494906.1 87162003 3915374 2441889..2442653 1 NC_007793.1 identified by match to protein family HMM PF01380; match to protein family HMM PF01418; phosphosugar-binding transcriptional regulator 2442653 3915374 SAUSA300_2271 Staphylococcus aureus subsp. aureus USA300_FPR3757 phosphosugar-binding transcriptional regulator YP_494906.1 2441889 D 451515 CDS YP_494907.1 87162245 3914870 complement(2442711..2443217) 1 NC_007793.1 hypothetical protein 2443217 3914870 SAUSA300_2272 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494907.1 2442711 R 451515 CDS YP_494908.1 87160956 3915351 complement(2443384..2444763) 1 NC_007793.1 identified by match to protein family HMM PF03553; Na+/H+ antiporter family protein 2444763 3915351 SAUSA300_2273 Staphylococcus aureus subsp. aureus USA300_FPR3757 Na+/H+ antiporter family protein YP_494908.1 2443384 R 451515 CDS YP_494909.1 87160244 3915135 complement(2444922..2445491) 1 NC_007793.1 hypothetical protein 2445491 3915135 SAUSA300_2274 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494909.1 2444922 R 451515 CDS YP_494910.1 87162108 3913102 complement(2445978..2446859) 1 NC_007793.1 identified by match to protein family HMM PF00106; short chain dehydrogenase/reductase family oxidoreductase 2446859 3913102 SAUSA300_2275 Staphylococcus aureus subsp. aureus USA300_FPR3757 short chain dehydrogenase/reductase family oxidoreductase YP_494910.1 2445978 R 451515 CDS YP_494911.1 87161218 3912793 complement(2446970..2448091) 1 NC_007793.1 identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891; M20/M25/M40 family peptidase 2448091 3912793 SAUSA300_2276 Staphylococcus aureus subsp. aureus USA300_FPR3757 M20/M25/M40 family peptidase YP_494911.1 2446970 R 451515 CDS YP_494912.1 87162411 3915258 complement(2448368..2449606) 1 NC_007793.1 catalyzing the hydrolysis of 4-imidazolone-5-propionate to N-formimidoyl-L-glutamate, the third step in the histidine degradation pathway; imidazolonepropionase 2449606 hutI 3915258 hutI Staphylococcus aureus subsp. aureus USA300_FPR3757 imidazolonepropionase YP_494912.1 2448368 R 451515 CDS YP_494913.1 87159917 3914963 complement(2449606..2451267) 1 NC_007793.1 catalyzes the formation of 4-imidazolone-5-propanoate from urocanate during histidine metabolism; urocanate hydratase 2451267 hutU 3914963 hutU Staphylococcus aureus subsp. aureus USA300_FPR3757 urocanate hydratase YP_494913.1 2449606 R 451515 CDS YP_494914.1 87160284 3913491 2451427..2452311 1 NC_007793.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family regulatory protein 2452311 3913491 SAUSA300_2279 Staphylococcus aureus subsp. aureus USA300_FPR3757 LysR family regulatory protein YP_494914.1 2451427 D 451515 CDS YP_494915.1 87161002 3913568 2452433..2452852 1 NC_007793.1 catalyzes resistance to fosfomycin by the addition of a thiol cofactor; fosfomycin resistance protein FosB 2452852 fosB 3913568 fosB Staphylococcus aureus subsp. aureus USA300_FPR3757 fosfomycin resistance protein FosB YP_494915.1 2452433 D 451515 CDS YP_494916.1 87160628 3915063 complement(2453108..2454043) 1 NC_007793.1 catalyzes the formation of glutamate and formamide from N-formimidoyl-L-glutamate; formimidoylglutamase 2454043 hutG 3915063 hutG Staphylococcus aureus subsp. aureus USA300_FPR3757 formimidoylglutamase YP_494916.1 2453108 R 451515 CDS YP_494917.1 87161379 3914149 2454333..2455592 1 NC_007793.1 identified by match to protein family HMM PF02517; hypothetical protein 2455592 3914149 SAUSA300_2282 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494917.1 2454333 D 451515 CDS YP_494918.1 87159890 3914936 complement(2455658..2456344) 1 NC_007793.1 catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway; ribose-5-phosphate isomerase A 2456344 rpiA 3914936 rpiA Staphylococcus aureus subsp. aureus USA300_FPR3757 ribose-5-phosphate isomerase A YP_494918.1 2455658 R 451515 CDS YP_494919.1 87160599 3915218 2456518..2457171 1 NC_007793.1 identified by match to protein family HMM PF03473; match to protein family HMM PF03475; hypothetical protein 2457171 3915218 SAUSA300_2284 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494919.1 2456518 D 451515 CDS YP_494920.1 87161694 3914459 complement(2457407..2458426) 1 NC_007793.1 identified by match to protein family HMM PF01263; aldose 1-epimerase 2458426 galM 3914459 galM Staphylococcus aureus subsp. aureus USA300_FPR3757 aldose 1-epimerase YP_494920.1 2457407 R 451515 CDS YP_494921.1 87162407 3915254 complement(2458456..2458782) 1 NC_007793.1 identified by match to protein family HMM PF02694; hypothetical protein 2458782 3915254 SAUSA300_2286 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494921.1 2458456 R 451515 CDS YP_494922.1 87161971 3914483 complement(2459000..2460232) 1 NC_007793.1 hypothetical protein 2460232 3914483 SAUSA300_2287 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494922.1 2459000 R 451515 CDS YP_494923.1 87161206 3912781 complement(2460225..2461124) 1 NC_007793.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 2461124 3912781 SAUSA300_2288 Staphylococcus aureus subsp. aureus USA300_FPR3757 ABC transporter ATP-binding protein YP_494923.1 2460225 R 451515 CDS YP_494924.1 87162419 3915266 complement(2461355..2462002) 1 NC_007793.1 identified by match to protein family HMM PF05656; hypothetical protein 2462002 3915266 SAUSA300_2289 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494924.1 2461355 R 451515 CDS YP_494925.1 87160626 3915061 2462401..2463009 1 NC_007793.1 identified by match to protein family HMM PF02245; match to protein family HMM TIGR00567; putative 3-methyladenine DNA glycosylase 2463009 3915061 SAUSA300_2290 Staphylococcus aureus subsp. aureus USA300_FPR3757 putative 3-methyladenine DNA glycosylase YP_494925.1 2462401 D 451515 CDS YP_494926.1 87160999 3913565 2463346..2464554 1 NC_007793.1 identified by match to protein family HMM PF03616; match to protein family HMM TIGR00210; sodium/glutamate symporter 2464554 gltS 3913565 gltS Staphylococcus aureus subsp. aureus USA300_FPR3757 sodium/glutamate symporter YP_494926.1 2463346 D 451515 CDS YP_494927.1 87160251 3915142 complement(2464602..2465651) 1 NC_007793.1 catalyzes the isomerization of isopentenyl pyrophosphate to dimethylallyl diphosphate; isopentenyl pyrophosphate isomerase 2465651 fni 3915142 fni Staphylococcus aureus subsp. aureus USA300_FPR3757 isopentenyl pyrophosphate isomerase YP_494927.1 2464602 R 451515 CDS YP_494928.1 87161343 3912860 complement(2465682..2466629) 1 NC_007793.1 identified by match to protein family HMM PF01544; magnesium and cobalt transport protein 2466629 corA 3912860 corA Staphylococcus aureus subsp. aureus USA300_FPR3757 magnesium and cobalt transport protein YP_494928.1 2465682 R 451515 CDS YP_494929.1 87160947 3913787 2466726..2467217 1 NC_007793.1 hypothetical protein 2467217 3913787 SAUSA300_2294 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494929.1 2466726 D 451515 CDS YP_494930.1 87159959 3913846 2467214..2467633 1 NC_007793.1 hypothetical protein 2467633 3913846 SAUSA300_2295 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494930.1 2467214 D 451515 CDS YP_494931.1 87162082 3914625 complement(2467741..2468661) 1 NC_007793.1 identified by match to protein family HMM PF07859; esterase-like protein 2468661 3914625 SAUSA300_2296 Staphylococcus aureus subsp. aureus USA300_FPR3757 esterase-like protein YP_494931.1 2467741 R 451515 CDS YP_494932.1 87162144 3914691 2468869..2469507 1 NC_007793.1 hypothetical protein 2469507 3914691 SAUSA300_2297 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494932.1 2468869 D 451515 CDS YP_494933.1 87161734 3913020 complement(2469753..2471684) 1 NC_007793.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711; multidrug resistance protein B, drug resistance transporter 2471684 3913020 SAUSA300_2298 Staphylococcus aureus subsp. aureus USA300_FPR3757 multidrug resistance protein B, drug resistance transporter YP_494933.1 2469753 R 451515 CDS YP_494934.1 87160414 3913132 complement(2471697..2472344) 1 NC_007793.1 hypothetical protein 2472344 3913132 SAUSA300_2299 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494934.1 2471697 R 451515 CDS YP_494935.1 87162322 3913456 2472465..2473016 1 NC_007793.1 identified by match to protein family HMM PF00440; TetR family transcriptional regulator 2473016 3913456 SAUSA300_2300 Staphylococcus aureus subsp. aureus USA300_FPR3757 TetR family transcriptional regulator YP_494935.1 2472465 D 451515 CDS YP_494936.1 87161925 3914585 complement(2473246..2474454) 1 NC_007793.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00710; teicoplanin resistance associated membrane protein TcaB protein 2474454 tcaB 3914585 tcaB Staphylococcus aureus subsp. aureus USA300_FPR3757 teicoplanin resistance associated membrane protein TcaB protein YP_494936.1 2473246 R 451515 CDS YP_494937.1 87161173 3914747 complement(2474723..2476105) 1 NC_007793.1 teicoplanin resistance associated membrane protein TcaA protein 2476105 tcaA 3914747 tcaA Staphylococcus aureus subsp. aureus USA300_FPR3757 teicoplanin resistance associated membrane protein TcaA protein YP_494937.1 2474723 R 451515 CDS YP_494938.1 87159885 3914106 complement(2476345..2476800) 1 NC_007793.1 identified by match to protein family HMM PF01047; transcriptional regulator TcaR 2476800 tcaR 3914106 tcaR Staphylococcus aureus subsp. aureus USA300_FPR3757 transcriptional regulator TcaR YP_494938.1 2476345 R 451515 CDS YP_494939.1 87162083 3914626 2476995..2477963 1 NC_007793.1 identified by match to protein family HMM PF02698; hypothetical protein 2477963 3914626 SAUSA300_2304 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494939.1 2476995 D 451515 CDS YP_494940.1 87161359 3912876 2478538..2478894 1 NC_007793.1 identified by similarity to GB:AAO04226.1; transposase, truncation 2478894 3912876 SAUSA300_2305 Staphylococcus aureus subsp. aureus USA300_FPR3757 transposase, truncation YP_494940.1 2478538 D 451515 CDS YP_494941.1 87160988 3913320 complement(2479034..2479699) 1 NC_007793.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 2479699 3913320 SAUSA300_2306 Staphylococcus aureus subsp. aureus USA300_FPR3757 ABC transporter ATP-binding protein YP_494941.1 2479034 R 451515 CDS YP_494942.1 87161438 3914111 complement(2479699..2480754) 1 NC_007793.1 identified by match to protein family HMM PF02687; ABC transporter permease 2480754 3914111 SAUSA300_2307 Staphylococcus aureus subsp. aureus USA300_FPR3757 ABC transporter permease YP_494942.1 2479699 R 451515 CDS YP_494943.1 87161981 3914878 2480890..2481564 1 NC_007793.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486; response regulator protein 2481564 3914878 SAUSA300_2308 Staphylococcus aureus subsp. aureus USA300_FPR3757 response regulator protein YP_494943.1 2480890 D 451515 CDS YP_494944.1 87160324 3915399 2481557..2482930 1 NC_007793.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; sensor histidine kinase 2482930 3915399 SAUSA300_2309 Staphylococcus aureus subsp. aureus USA300_FPR3757 sensor histidine kinase YP_494944.1 2481557 D 451515 CDS YP_494945.1 87160875 3914147 2483093..2483536 1 NC_007793.1 identified by match to protein family HMM PF04397; hypothetical protein 2483536 3914147 SAUSA300_2310 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494945.1 2483093 D 451515 CDS YP_494946.1 87161425 3914074 2483533..2483988 1 NC_007793.1 hypothetical protein 2483988 3914074 SAUSA300_2311 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494946.1 2483533 D 451515 CDS YP_494947.1 87162293 3913602 complement(2484054..2485589) 1 NC_007793.1 malate dehydrogenase; catalyzes the oxidation of malate to oxaloacetate; malate:quinone oxidoreductase 2485589 mqo 3913602 mqo Staphylococcus aureus subsp. aureus USA300_FPR3757 malate:quinone oxidoreductase YP_494947.1 2484054 R 451515 CDS YP_494948.1 87160278 3913485 complement(2485913..2487511) 1 NC_007793.1 identified by match to protein family HMM PF02652; match to protein family HMM TIGR00795; L-lactate permease 2487511 3913485 SAUSA300_2313 Staphylococcus aureus subsp. aureus USA300_FPR3757 L-lactate permease YP_494948.1 2485913 R 451515 CDS YP_494949.1 87161130 3913719 2487828..2489501 1 NC_007793.1 hypothetical protein 2489501 3913719 SAUSA300_2314 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494949.1 2487828 D 451515 CDS YP_494950.1 87161686 3914451 complement(2489654..2490283) 1 NC_007793.1 hypothetical protein 2490283 3914451 SAUSA300_2315 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494950.1 2489654 R 451515 CDS YP_494951.1 87161256 3913865 complement(2490597..2491112) 1 NC_007793.1 identified by match to protein family HMM PF00583; acetyltransferase 2491112 3913865 SAUSA300_2316 Staphylococcus aureus subsp. aureus USA300_FPR3757 acetyltransferase YP_494951.1 2490597 R 451515 CDS YP_494952.1 87160438 3912941 2491405..2492307 1 NC_007793.1 identified by match to protein family HMM PF00107; putative zinc-binding dehydrogenase 2492307 3912941 SAUSA300_2317 Staphylococcus aureus subsp. aureus USA300_FPR3757 putative zinc-binding dehydrogenase YP_494952.1 2491405 D 451515 CDS YP_494953.1 87160071 3913295 complement(2492353..2492754) 1 NC_007793.1 identified by match to protein family HMM PF00583; acetyltransferase 2492754 3913295 SAUSA300_2318 Staphylococcus aureus subsp. aureus USA300_FPR3757 acetyltransferase YP_494953.1 2492353 R 451515 CDS YP_494954.1 87160801 3913033 complement(2492790..2493824) 1 NC_007793.1 identified by match to protein family HMM PF00070; match to protein family HMM PF03486; match to protein family HMM PF07992; pyridine nucleotide-disulfide oxidoreductase 2493824 3913033 SAUSA300_2319 Staphylococcus aureus subsp. aureus USA300_FPR3757 pyridine nucleotide-disulfide oxidoreductase YP_494954.1 2492790 R 451515 CDS YP_494955.1 87162230 3914006 complement(2494056..2494487) 1 NC_007793.1 hypothetical protein 2494487 3914006 SAUSA300_2320 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494955.1 2494056 R 451515 CDS YP_494956.1 87161064 3912774 complement(2494694..2495971) 1 NC_007793.1 identified by match to protein family HMM PF01061; hypothetical protein 2495971 3912774 SAUSA300_2321 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494956.1 2494694 R 451515 CDS YP_494957.1 87161196 3914907 2496132..2496755 1 NC_007793.1 identified by match to protein family HMM PF00440; TetR family transcriptional regulator 2496755 3914907 SAUSA300_2322 Staphylococcus aureus subsp. aureus USA300_FPR3757 TetR family transcriptional regulator YP_494957.1 2496132 D 451515 CDS YP_494958.1 87161947 3913704 2496801..2497745 1 NC_007793.1 identified by match to protein family HMM PF01544; CorA family protein 2497745 cobI 3913704 cobI Staphylococcus aureus subsp. aureus USA300_FPR3757 CorA family protein YP_494958.1 2496801 D 451515 CDS YP_494959.1 87160070 3913294 complement(2497831..2499273) 1 NC_007793.1 identified by match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR01996; PTS system, sucrose-specific IIBC component 2499273 3913294 SAUSA300_2324 Staphylococcus aureus subsp. aureus USA300_FPR3757 PTS system, sucrose-specific IIBC component YP_494959.1 2497831 R 451515 CDS YP_494960.1 87160705 3912820 2499456..2499839 1 NC_007793.1 hypothetical protein 2499839 3912820 SAUSA300_2325 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494960.1 2499456 D 451515 CDS YP_494961.1 87161309 3914805 2501327..2503432 1 NC_007793.1 identified by match to protein family HMM PF00165; transcription regulatory protein 2503432 3914805 SAUSA300_2326 Staphylococcus aureus subsp. aureus USA300_FPR3757 transcription regulatory protein YP_494961.1 2501327 D 451515 CDS YP_494962.1 87161861 3913967 2503503..2503925 1 NC_007793.1 identified by match to protein family HMM PF01243; hypothetical protein 2503925 3913967 SAUSA300_2327 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494962.1 2503503 D 451515 CDS YP_494963.1 87161727 3913013 2504190..2504546 1 NC_007793.1 hypothetical protein 2504546 3913013 SAUSA300_2328 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494963.1 2504190 D 451515 CDS YP_494964.1 87162417 3915264 complement(2504950..2506227) 1 NC_007793.1 identified by match to protein family HMM PF00375; proton/sodium-glutamate symport protein 2506227 gltT 3915264 gltT Staphylococcus aureus subsp. aureus USA300_FPR3757 proton/sodium-glutamate symport protein YP_494964.1 2504950 R 451515 CDS YP_494965.1 87160039 3913360 complement(2506409..2506774) 1 NC_007793.1 hypothetical protein 2506774 3913360 SAUSA300_2330 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494965.1 2506409 R 451515 CDS YP_494966.1 87160556 3913511 2507172..2507618 1 NC_007793.1 identified by match to protein family HMM PF01047; MarR family transcriptional regulator 2507618 3913511 SAUSA300_2331 Staphylococcus aureus subsp. aureus USA300_FPR3757 MarR family transcriptional regulator YP_494966.1 2507172 D 451515 CDS YP_494967.1 87161493 3914235 2507834..2508262 1 NC_007793.1 identified by match to protein family HMM PF00011; heat shock protein 2508262 3914235 SAUSA300_2332 Staphylococcus aureus subsp. aureus USA300_FPR3757 heat shock protein YP_494967.1 2507834 D 451515 CDS YP_494968.1 87162062 3914241 complement(2508369..2509538) 1 NC_007793.1 identified by match to protein family HMM PF07690; nitrite extrusion protein 2509538 narK 3914241 narK Staphylococcus aureus subsp. aureus USA300_FPR3757 nitrite extrusion protein YP_494968.1 2508369 R 451515 CDS YP_494969.1 87161018 3913934 2509908..2510546 1 NC_007793.1 hypothetical protein 2510546 3913934 SAUSA300_2334 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494969.1 2509908 D 451515 CDS YP_494970.1 87160958 3915353 2510616..2510822 1 NC_007793.1 authenticated frameshift mutation resulting in a premature stop--the same authenticated frameshift mutation was found in COL; hypothetical protein 2510822 3915353 SAUSA300_2335 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494970.1 2510616 D 451515 CDS YP_494971.1 87161508 3913221 2510801..2511541 1 NC_007793.1 identified by match to protein family HMM PF00376; match to protein family HMM PF07739; MerR family transcriptional regulator 2511541 3913221 SAUSA300_2336 Staphylococcus aureus subsp. aureus USA300_FPR3757 MerR family transcriptional regulator YP_494971.1 2510801 D 451515 CDS YP_494972.1 87162341 3913825 complement(2511799..2512452) 1 NC_007793.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00196; DegU family transcriptional regulator 2512452 3913825 SAUSA300_2337 Staphylococcus aureus subsp. aureus USA300_FPR3757 DegU family transcriptional regulator YP_494972.1 2511799 R 451515 CDS YP_494973.1 87161813 3914649 complement(2512475..2513509) 1 NC_007793.1 identified by match to protein family HMM PF02518; match to protein family HMM PF07730; sensor histidine kinase 2513509 3914649 SAUSA300_2338 Staphylococcus aureus subsp. aureus USA300_FPR3757 sensor histidine kinase YP_494973.1 2512475 R 451515 CDS YP_494974.1 87162305 3913614 complement(2513533..2513985) 1 NC_007793.1 hypothetical protein 2513985 3913614 SAUSA300_2339 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494974.1 2513533 R 451515 CDS YP_494975.1 87160047 3912900 complement(2514005..2514682) 1 NC_007793.1 identified by match to protein family HMM PF02665; match to protein family HMM TIGR00351; respiratory nitrate reductase, gamma subunit 2514682 narI 3912900 narI Staphylococcus aureus subsp. aureus USA300_FPR3757 respiratory nitrate reductase, gamma subunit YP_494975.1 2514005 R 451515 CDS YP_494976.1 87162256 3913174 complement(2514675..2515265) 1 NC_007793.1 identified by match to protein family HMM PF02613; match to protein family HMM TIGR00684; respiratory nitrate reductase, subunit delta 2515265 narJ 3913174 narJ Staphylococcus aureus subsp. aureus USA300_FPR3757 respiratory nitrate reductase, subunit delta YP_494976.1 2514675 R 451515 CDS YP_494977.1 87162020 3914277 complement(2515243..2516688) 1 NC_007793.1 identified by match to protein family HMM TIGR01660; respiratory nitrate reductase, beta subunit 2516688 narH 3914277 narH Staphylococcus aureus subsp. aureus USA300_FPR3757 respiratory nitrate reductase, beta subunit YP_494977.1 2515243 R 451515 CDS YP_494978.1 87160171 3914523 complement(2516792..2520481) 1 NC_007793.1 identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM TIGR01580; respiratory nitrate reductase, alpha subunit 2520481 3914523 SAUSA300_2343 Staphylococcus aureus subsp. aureus USA300_FPR3757 respiratory nitrate reductase, alpha subunit YP_494978.1 2516792 R 451515 CDS YP_494979.1 87160643 3915078 complement(2520790..2521767) 1 NC_007793.1 identified by match to protein family HMM PF00590; match to protein family HMM TIGR01469; uroporphyrin-III C-methyl transferase 2521767 3915078 SAUSA300_2344 Staphylococcus aureus subsp. aureus USA300_FPR3757 uroporphyrin-III C-methyl transferase YP_494979.1 2520790 R 451515 CDS YP_494980.1 87161105 3914311 complement(2521758..2522072) 1 NC_007793.1 identified by match to protein family HMM PF00355; match to protein family HMM TIGR02378; nitrite reductase [NAD(P)H], small subunit 2522072 nirD 3914311 nirD Staphylococcus aureus subsp. aureus USA300_FPR3757 nitrite reductase [NAD(P)H], small subunit YP_494980.1 2521758 R 451515 CDS YP_494981.1 87161990 3914887 complement(2522076..2524481) 1 NC_007793.1 identified by match to protein family HMM PF00070; match to protein family HMM PF01077; match to protein family HMM PF03460; match to protein family HMM PF04324; match to protein family HMM PF07992; match to protein family HMM TIGR02374; nitrite reductase [NAD(P)H], large subunit 2524481 nirB 3914887 nirB Staphylococcus aureus subsp. aureus USA300_FPR3757 nitrite reductase [NAD(P)H], large subunit YP_494981.1 2522076 R 451515 CDS YP_494982.1 87162228 3914003 complement(2524547..2525278) 1 NC_007793.1 identified by match to protein family HMM PF01903; nitrite reductase transcriptional regulator NirR 2525278 nirR 3914003 nirR Staphylococcus aureus subsp. aureus USA300_FPR3757 nitrite reductase transcriptional regulator NirR YP_494982.1 2524547 R 451515 CDS YP_494983.1 87162075 3914254 complement(2525508..2526044) 1 NC_007793.1 identified by match to protein family HMM PF00583; hypothetical protein 2526044 3914254 SAUSA300_2348 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494983.1 2525508 R 451515 CDS YP_494984.1 87161337 3915308 complement(2526277..2527101) 1 NC_007793.1 identified by match to protein family HMM PF01226; formate/nitrite transporter family protein 2527101 3915308 SAUSA300_2349 Staphylococcus aureus subsp. aureus USA300_FPR3757 formate/nitrite transporter family protein YP_494984.1 2526277 R 451515 CDS YP_494985.1 87160658 3913982 complement(2527584..2528051) 1 NC_007793.1 hypothetical protein 2528051 3913982 SAUSA300_2350 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494985.1 2527584 R 451515 CDS YP_494986.1 87159949 3913836 complement(2528237..2529787) 1 NC_007793.1 identified by match to protein family HMM PF01297; Zn-binding lipoprotein adcA-like protein 2529787 3913836 SAUSA300_2351 Staphylococcus aureus subsp. aureus USA300_FPR3757 Zn-binding lipoprotein adcA-like protein YP_494986.1 2528237 R 451515 CDS YP_494987.1 87162435 3915031 complement(2530082..2530348) 1 NC_007793.1 identified by match to protein family HMM PF06769; match to protein family HMM TIGR02116; addiction module antitoxin 2530348 3915031 SAUSA300_2352 Staphylococcus aureus subsp. aureus USA300_FPR3757 addiction module antitoxin YP_494987.1 2530082 R 451515 CDS YP_494988.1 87161563 3915178 complement(2530348..2530599) 1 NC_007793.1 identified by match to protein family HMM PF02604; match to protein family HMM TIGR01552; hypothetical protein 2530599 3915178 SAUSA300_2353 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494988.1 2530348 R 451515 CDS YP_494989.1 87161010 3913576 complement(2530872..2531471) 1 NC_007793.1 putative lipoprotein 2531471 3913576 SAUSA300_2354 Staphylococcus aureus subsp. aureus USA300_FPR3757 putative lipoprotein YP_494989.1 2530872 R 451515 CDS YP_494990.1 87161399 3914087 complement(2531490..2531837) 1 NC_007793.1 putative lipoprotein 2531837 3914087 SAUSA300_2355 Staphylococcus aureus subsp. aureus USA300_FPR3757 putative lipoprotein YP_494990.1 2531490 R 451515 CDS YP_494991.1 87161012 3913578 2532104..2533354 1 NC_007793.1 identified by match to protein family HMM PF02388; fmhA protein 2533354 fmhA 3913578 fmhA Staphylococcus aureus subsp. aureus USA300_FPR3757 fmhA protein YP_494991.1 2532104 D 451515 CDS YP_494992.1 87160004 3914432 complement(2533451..2534182) 1 NC_007793.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 2534182 3914432 SAUSA300_2357 Staphylococcus aureus subsp. aureus USA300_FPR3757 ABC transporter ATP-binding protein YP_494992.1 2533451 R 451515 CDS YP_494993.1 87160289 3913496 complement(2534179..2534898) 1 NC_007793.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726; ABC transporter permease 2534898 3913496 SAUSA300_2358 Staphylococcus aureus subsp. aureus USA300_FPR3757 ABC transporter permease YP_494993.1 2534179 R 451515 CDS YP_494994.1 87162197 3914840 complement(2534879..2535658) 1 NC_007793.1 identified by match to protein family HMM PF00497; amino acid ABC transporter amino acid-binding protein 2535658 3914840 SAUSA300_2359 Staphylococcus aureus subsp. aureus USA300_FPR3757 amino acid ABC transporter amino acid-binding protein YP_494994.1 2534879 R 451515 CDS YP_494995.1 87162128 3913592 complement(2535779..2537137) 1 NC_007793.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711; multidrug resistance protein 2537137 3913592 SAUSA300_2360 Staphylococcus aureus subsp. aureus USA300_FPR3757 multidrug resistance protein YP_494995.1 2535779 R 451515 CDS YP_494996.1 87159936 3914982 2537392..2537496 1 NC_007793.1 hypothetical protein 2537496 3914982 SAUSA300_2361 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_494996.1 2537392 D 451515 CDS YP_494997.1 87162364 3914213 complement(2537650..2538336) 1 NC_007793.1 2,3-bisphosphoglycerate-dependent; catalyzes the interconversion of 2-phosphoglycerate to 3-phosphoglycerate; phosphoglyceromutase 2538336 gpmA 3914213 gpmA Staphylococcus aureus subsp. aureus USA300_FPR3757 phosphoglyceromutase YP_494997.1 2537650 R 451515 CDS YP_494998.1 87161476 3914218 complement(2538663..2539529) 1 NC_007793.1 identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297; cation efflux family protein 2539529 3914218 SAUSA300_2363 Staphylococcus aureus subsp. aureus USA300_FPR3757 cation efflux family protein YP_494998.1 2538663 R 451515 CDS YP_494999.1 87161897 3914408 2540281..2541591 1 NC_007793.1 identified by match to protein family HMM PF02216; IgG-binding protein SBI 2541591 sbi 3914408 sbi Staphylococcus aureus subsp. aureus USA300_FPR3757 IgG-binding protein SBI YP_494999.1 2540281 D 451515 CDS YP_495000.1 87161385 3914155 2542127..2543056 1 NC_007793.1 identified by match to protein family HMM PF07968; match to protein family HMM TIGR01002; gamma-hemolysin component A 2543056 hlgA 3914155 hlgA Staphylococcus aureus subsp. aureus USA300_FPR3757 gamma-hemolysin component A YP_495000.1 2542127 D 451515 CDS YP_495001.1 87160644 3915079 2543623..2544570 1 NC_007793.1 identified by match to protein family HMM PF07968; match to protein family HMM TIGR01002; gamma-hemolysin component C 2544570 hlgC 3915079 hlgC Staphylococcus aureus subsp. aureus USA300_FPR3757 gamma-hemolysin component C YP_495001.1 2543623 D 451515 CDS YP_495002.1 87160716 3912831 2544572..2545549 1 NC_007793.1 identified by match to protein family HMM PF07968; match to protein family HMM TIGR01002; gamma-hemolysin component B 2545549 hlgB 3912831 hlgB Staphylococcus aureus subsp. aureus USA300_FPR3757 gamma-hemolysin component B YP_495002.1 2544572 D 451515 CDS YP_495003.1 87159932 3914978 complement(2545601..2546068) 1 NC_007793.1 hypothetical protein 2546068 3914978 SAUSA300_2368 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_495003.1 2545601 R 451515 CDS YP_495004.1 87162102 3913096 complement(2546079..2546771) 1 NC_007793.1 catalyzes the formation of pimeloyl-CoA from pimelate and coenzyme A; 6-carboxyhexanoate--CoA ligase 2546771 3913096 SAUSA300_2369 Staphylococcus aureus subsp. aureus USA300_FPR3757 6-carboxyhexanoate--CoA ligase YP_495004.1 2546079 R 451515 CDS YP_495005.1 87161361 3914760 complement(2546782..2547897) 1 NC_007793.1 identified by match to protein family HMM PF00155; match to protein family HMM PF00266; putative 8-amino-7-oxononanoate synthase 2547897 3914760 SAUSA300_2370 Staphylococcus aureus subsp. aureus USA300_FPR3757 putative 8-amino-7-oxononanoate synthase YP_495005.1 2546782 R 451515 CDS YP_495006.1 87160930 3914368 complement(2547875..2548882) 1 NC_007793.1 catalyzes the formation of biotin from dethiobiotin and sulfur 2 S-adenosyl-L-methionine; biotin synthase 2548882 bioB 3914368 bioB Staphylococcus aureus subsp. aureus USA300_FPR3757 biotin synthase YP_495006.1 2547875 R 451515 CDS YP_495007.1 87160246 3915137 complement(2548884..2550242) 1 NC_007793.1 identified by match to protein family HMM PF00202; match to protein family HMM TIGR00508; adenosylmethionine-8-amino-7-oxononanoate aminotransferase 2550242 bioA 3915137 bioA Staphylococcus aureus subsp. aureus USA300_FPR3757 adenosylmethionine-8-amino-7-oxononanoate aminotransferase YP_495007.1 2548884 R 451515 CDS YP_495008.1 87161832 3913803 complement(2550220..2550906) 1 NC_007793.1 identified by match to protein family HMM TIGR00347; dethiobiotin synthase 2550906 bioD 3913803 bioD Staphylococcus aureus subsp. aureus USA300_FPR3757 dethiobiotin synthase YP_495008.1 2550220 R 451515 CDS YP_495009.1 87160082 3913306 complement(2551358..2553091) 1 NC_007793.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding/permease 2553091 3913306 SAUSA300_2374 Staphylococcus aureus subsp. aureus USA300_FPR3757 ABC transporter ATP-binding/permease YP_495009.1 2551358 R 451515 CDS YP_495010.1 87162171 3915202 complement(2553116..2554879) 1 NC_007793.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664; ABC transporter ATP-binding/permease 2554879 3915202 SAUSA300_2375 Staphylococcus aureus subsp. aureus USA300_FPR3757 ABC transporter ATP-binding/permease YP_495010.1 2553116 R 451515 CDS YP_495011.1 87162353 3914202 complement(2555748..2556134) 1 NC_007793.1 identified by match to protein family HMM PF04138; hypothetical protein 2556134 3914202 SAUSA300_2376 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_495011.1 2555748 R 451515 CDS YP_495012.1 87161860 3913966 2556402..2557544 1 NC_007793.1 identified by match to protein family HMM PF02595; match to protein family HMM TIGR00045; glycerate kinase 2557544 3913966 SAUSA300_2377 Staphylococcus aureus subsp. aureus USA300_FPR3757 glycerate kinase YP_495012.1 2556402 D 451515 CDS YP_495013.1 87161315 3914811 2557604..2558263 1 NC_007793.1 hypothetical protein 2558263 3914811 SAUSA300_2378 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_495013.1 2557604 D 451515 CDS YP_495014.1 87160636 3915071 2558445..2559656 1 NC_007793.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00710; putative transporter protein 2559656 3915071 SAUSA300_2379 Staphylococcus aureus subsp. aureus USA300_FPR3757 putative transporter protein YP_495014.1 2558445 D 451515 CDS YP_495015.1 87162002 3915373 complement(2559779..2560252) 1 NC_007793.1 identified by match to protein family HMM PF06445; hypothetical protein 2560252 3915373 SAUSA300_2380 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_495015.1 2559779 R 451515 CDS YP_495016.1 87161417 3914105 2560452..2561021 1 NC_007793.1 hypothetical protein 2561021 3914105 SAUSA300_2381 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_495016.1 2560452 D 451515 CDS YP_495017.1 87160855 3913401 complement(2561084..2561890) 1 NC_007793.1 identified by match to protein family HMM PF00149; hypothetical protein 2561890 3913401 SAUSA300_2382 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_495017.1 2561084 R 451515 CDS YP_495018.1 87160937 3913777 2562176..2563585 1 NC_007793.1 identified by match to protein family HMM PF00324; amino acid permease 2563585 3913777 SAUSA300_2383 Staphylococcus aureus subsp. aureus USA300_FPR3757 amino acid permease YP_495018.1 2562176 D 451515 CDS YP_495019.1 87161974 3914486 2563723..2565801 1 NC_007793.1 identified by match to protein family HMM PF00999; putative Na+/H+ antiporter 2565801 3914486 SAUSA300_2384 Staphylococcus aureus subsp. aureus USA300_FPR3757 putative Na+/H+ antiporter YP_495019.1 2563723 D 451515 CDS YP_495020.1 87159897 3914943 complement(2565941..2567770) 1 NC_007793.1 identified by match to protein family HMM PF00324; hypothetical protein 2567770 3914943 SAUSA300_2385 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_495020.1 2565941 R 451515 CDS YP_495021.1 87160635 3915070 2568002..2569498 1 NC_007793.1 identified by match to protein family HMM PF00144; beta-lactamase 2569498 3915070 SAUSA300_2386 Staphylococcus aureus subsp. aureus USA300_FPR3757 beta-lactamase YP_495021.1 2568002 D 451515 CDS YP_495022.1 87161180 3914754 complement(2569590..2570441) 1 NC_007793.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; NAD dependent epimerase/dehydratase family protein 2570441 3914754 SAUSA300_2387 Staphylococcus aureus subsp. aureus USA300_FPR3757 NAD dependent epimerase/dehydratase family protein YP_495022.1 2569590 R 451515 CDS YP_495023.1 87162032 3914289 complement(2570763..2571698) 1 NC_007793.1 ketopantoate reductase; catalyzes the NADPH reduction of ketopantoate to pantoate; functions in pantothenate (vitamin B5) biosynthesis; 2-dehydropantoate 2-reductase 2571698 panE 3914289 panE Staphylococcus aureus subsp. aureus USA300_FPR3757 2-dehydropantoate 2-reductase YP_495023.1 2570763 R 451515 CDS YP_495024.1 87160731 3913432 complement(2571924..2573324) 1 NC_007793.1 identified by match to protein family HMM PF07690; putative drug transporter 2573324 3913432 SAUSA300_2389 Staphylococcus aureus subsp. aureus USA300_FPR3757 putative drug transporter YP_495024.1 2571924 R 451515 CDS YP_495025.1 87160997 3913563 complement(2573618..2574313) 1 NC_007793.1 identified by match to protein family HMM PF00528; glycine betaine/carnitine/choline transport system permease 2574313 opuCd 3913563 opuCd Staphylococcus aureus subsp. aureus USA300_FPR3757 glycine betaine/carnitine/choline transport system permease YP_495025.1 2573618 R 451515 CDS YP_495026.1 87161518 3913192 complement(2574313..2575254) 1 NC_007793.1 identified by match to protein family HMM PF04069; glycine betaine/carnitine/choline ABC transporter 2575254 opuCc 3913192 opuCc Staphylococcus aureus subsp. aureus USA300_FPR3757 glycine betaine/carnitine/choline ABC transporter YP_495026.1 2574313 R 451515 CDS YP_495027.1 87162395 3913918 complement(2575271..2575906) 1 NC_007793.1 identified by match to protein family HMM PF00528; glycine betaine/carnitine/choline ABC transporter 2575906 opuCb 3913918 opuCb Staphylococcus aureus subsp. aureus USA300_FPR3757 glycine betaine/carnitine/choline ABC transporter YP_495027.1 2575271 R 451515 CDS YP_495028.1 87161602 3914386 complement(2575903..2577129) 1 NC_007793.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00571; match to protein family HMM TIGR01186; glycine betaine/carnitine/choline ABC transporter ATP-binding protein 2577129 opuCa 3914386 opuCa Staphylococcus aureus subsp. aureus USA300_FPR3757 glycine betaine/carnitine/choline ABC transporter ATP-binding protein YP_495028.1 2575903 R 451515 CDS YP_495029.1 87162327 3913461 complement(2577799..2578398) 1 NC_007793.1 hypothetical protein 2578398 3913461 SAUSA300_2394 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_495029.1 2577799 R 451515 CDS YP_495030.1 87160113 3913377 2578578..2580215 1 NC_007793.1 identified by match to protein family HMM PF00324; amino acid permease 2580215 3913377 SAUSA300_2395 Staphylococcus aureus subsp. aureus USA300_FPR3757 amino acid permease YP_495030.1 2578578 D 451515 CDS YP_495031.1 87160859 3914130 2580823..2582175 1 NC_007793.1 identified by match to protein family HMM PF00135; para-nitrobenzyl esterase 2582175 pnbA 3914130 pnbA Staphylococcus aureus subsp. aureus USA300_FPR3757 para-nitrobenzyl esterase YP_495031.1 2580823 D 451515 CDS YP_495032.1 87161435 3914084 complement(2582237..2583424) 1 NC_007793.1 identified by match to protein family HMM PF07690; putative transport protein 2583424 3914084 SAUSA300_2397 Staphylococcus aureus subsp. aureus USA300_FPR3757 putative transport protein YP_495032.1 2582237 R 451515 CDS YP_495033.1 87161839 3913810 complement(2583820..2584596) 1 NC_007793.1 identified by match to protein family HMM PF03649; match to protein family HMM TIGR00245; hypothetical protein 2584596 3913810 SAUSA300_2398 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_495033.1 2583820 R 451515 CDS YP_495034.1 87160264 3913666 complement(2584589..2585251) 1 NC_007793.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 2585251 3913666 SAUSA300_2399 Staphylococcus aureus subsp. aureus USA300_FPR3757 ABC transporter ATP-binding protein YP_495034.1 2584589 R 451515 CDS YP_495035.1 87160724 3913425 complement(2585499..2586575) 1 NC_007793.1 identified by match to protein family HMM PF05343; glutamyl-aminopeptidase 2586575 3913425 SAUSA300_2400 Staphylococcus aureus subsp. aureus USA300_FPR3757 glutamyl-aminopeptidase YP_495035.1 2585499 R 451515 CDS YP_495036.1 87162431 3915027 complement(2586930..2587196) 1 NC_007793.1 identified by match to protein family HMM PF05016; match to protein family HMM PF06769; match to protein family HMM TIGR02116; addiction module antitoxin 2587196 3915027 SAUSA300_2401 Staphylococcus aureus subsp. aureus USA300_FPR3757 addiction module antitoxin YP_495036.1 2586930 R 451515 CDS YP_495037.1 87160213 3913086 complement(2587196..2587453) 1 NC_007793.1 identified by match to protein family HMM PF02604; match to protein family HMM TIGR01552; hypothetical protein 2587453 3913086 SAUSA300_2402 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_495037.1 2587196 R 451515 CDS YP_495038.1 87161204 3914915 2587812..2588267 1 NC_007793.1 identified by match to protein family HMM PF06998; putative lipoprotein 2588267 3914915 SAUSA300_2403 Staphylococcus aureus subsp. aureus USA300_FPR3757 putative lipoprotein YP_495038.1 2587812 D 451515 CDS YP_495039.1 87160792 3914612 complement(2588435..2590012) 1 NC_007793.1 identified by similarity to GB:CAA75550.1; match to protein family HMM PF01645; hypothetical protein 2590012 3914612 SAUSA300_2404 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_495039.1 2588435 R 451515 CDS YP_495040.1 87160149 3913119 2590207..2590956 1 NC_007793.1 identified by similarity to GB:AAW38558.1; hypothetical protein 2590956 3913119 SAUSA300_2405 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_495040.1 2590207 D 451515 CDS YP_495041.1 87161511 3913224 complement(2591180..2592373) 1 NC_007793.1 identified by match to protein family HMM PF07690; putative transporter 2592373 3913224 SAUSA300_2406 Staphylococcus aureus subsp. aureus USA300_FPR3757 putative transporter YP_495041.1 2591180 R 451515 CDS YP_495042.1 87161076 3914262 complement(2592385..2593134) 1 NC_007793.1 identified by match to protein family HMM PF00005; oligopeptide ABC transporter ATP-binding protein 2593134 3914262 SAUSA300_2407 Staphylococcus aureus subsp. aureus USA300_FPR3757 oligopeptide ABC transporter ATP-binding protein YP_495042.1 2592385 R 451515 CDS YP_495043.1 87160376 3912802 complement(2593127..2593942) 1 NC_007793.1 identified by match to protein family HMM PF00005; oligopeptide ABC transporter ATP-binding protein 2593942 3912802 SAUSA300_2408 Staphylococcus aureus subsp. aureus USA300_FPR3757 oligopeptide ABC transporter ATP-binding protein YP_495043.1 2593127 R 451515 CDS YP_495044.1 87162365 3914214 complement(2593939..2594808) 1 NC_007793.1 identified by match to protein family HMM PF00528; oligopeptide ABC transporter permease 2594808 3914214 SAUSA300_2409 Staphylococcus aureus subsp. aureus USA300_FPR3757 oligopeptide ABC transporter permease YP_495044.1 2593939 R 451515 CDS YP_495045.1 87161166 3914740 complement(2594805..2595740) 1 NC_007793.1 identified by match to protein family HMM PF00528; oligopeptide ABC transporter permease 2595740 3914740 SAUSA300_2410 Staphylococcus aureus subsp. aureus USA300_FPR3757 oligopeptide ABC transporter permease YP_495045.1 2594805 R 451515 CDS YP_495046.1 87160743 3913406 complement(2595753..2597351) 1 NC_007793.1 identified by match to protein family HMM PF00496; match to protein family HMM TIGR02294; oligopeptide permease, peptide-binding protein 2597351 opp-1A 3913406 opp-1A Staphylococcus aureus subsp. aureus USA300_FPR3757 oligopeptide permease, peptide-binding protein YP_495046.1 2595753 R 451515 CDS YP_495047.1 87160203 3913076 complement(2597494..2598708) 1 NC_007793.1 hypothetical protein 2598708 3913076 SAUSA300_2412 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_495047.1 2597494 R 451515 CDS YP_495048.1 87160741 3913442 complement(2598788..2599606) 1 NC_007793.1 hypothetical protein 2599606 3913442 SAUSA300_2413 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_495048.1 2598788 R 451515 CDS YP_495049.1 87160489 3913344 complement(2599617..2600438) 1 NC_007793.1 identified by similarity to GB:BAB05790.1; hypothetical protein 2600438 3913344 SAUSA300_2414 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_495049.1 2599617 R 451515 CDS YP_495050.1 87162176 3913873 complement(2601305..2601670) 1 NC_007793.1 hypothetical protein 2601670 3913873 SAUSA300_2415 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_495050.1 2601305 R 451515 CDS YP_495051.2 162138562 3914752 complement(2601933..2602652) 1 NC_007793.1 glucose 1-dehydrogenase-like protein 2602652 3914752 SAUSA300_2416 Staphylococcus aureus subsp. aureus USA300_FPR3757 glucose 1-dehydrogenase-like protein YP_495051.2 2601933 R 451515 CDS YP_495052.1 87161118 3914344 2602984..2604522 1 NC_007793.1 identified by match to protein family HMM PF03606; match to protein family HMM PF03806; putative transporter 2604522 3914344 SAUSA300_2417 Staphylococcus aureus subsp. aureus USA300_FPR3757 putative transporter YP_495052.1 2602984 D 451515 CDS YP_495053.1 87160552 3913507 complement(2604634..2605056) 1 NC_007793.1 identified by match to protein family HMM PF02627; match to protein family HMM TIGR00778; hypothetical protein 2605056 3913507 SAUSA300_2418 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_495053.1 2604634 R 451515 CDS YP_495054.1 87159973 3914825 complement(2605508..2605927) 1 NC_007793.1 identified by match to protein family HMM PF07252; hypothetical protein 2605927 3914825 SAUSA300_2419 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_495054.1 2605508 R 451515 CDS YP_495055.1 87162007 3915378 complement(2605945..2606364) 1 NC_007793.1 identified by match to protein family HMM PF07252; hypothetical protein 2606364 3915378 SAUSA300_2420 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_495055.1 2605945 R 451515 CDS YP_495056.1 87161443 3914116 complement(2606631..2607053) 1 NC_007793.1 identified by match to protein family HMM PF07252; hypothetical protein 2607053 3914116 SAUSA300_2421 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_495056.1 2606631 R 451515 CDS YP_495057.1 87160664 3913988 complement(2607304..2607999) 1 NC_007793.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01370; short chain dehydrogenase/reductase family oxidoreductase 2607999 3913988 SAUSA300_2422 Staphylococcus aureus subsp. aureus USA300_FPR3757 short chain dehydrogenase/reductase family oxidoreductase YP_495057.1 2607304 R 451515 CDS YP_495058.1 87161541 3914667 complement(2608829..2609020) 1 NC_007793.1 hypothetical protein 2609020 3914667 SAUSA300_2423 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_495058.1 2608829 R 451515 CDS YP_495059.1 87162278 3915318 complement(2609581..2610375) 1 NC_007793.1 identified by match to protein family HMM PF04507; match to protein family HMM TIGR01742; putative tandem lipoprotein 2610375 3915318 SAUSA300_2424 Staphylococcus aureus subsp. aureus USA300_FPR3757 putative tandem lipoprotein YP_495059.1 2609581 R 451515 CDS YP_495060.1 87160362 3913236 complement(2610911..2611198) 1 NC_007793.1 hypothetical protein 2611198 3913236 SAUSA300_2425 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_495060.1 2610911 R 451515 CDS YP_495061.1 87161664 3913166 complement(2611201..2611527) 1 NC_007793.1 hypothetical protein 2611527 3913166 SAUSA300_2426 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_495061.1 2611201 R 451515 CDS YP_495062.1 87160566 3913521 complement(2612848..2613090) 1 NC_007793.1 tandem lipoprotein 2613090 3913521 SAUSA300_2428 Staphylococcus aureus subsp. aureus USA300_FPR3757 tandem lipoprotein YP_495062.1 2612848 R 451515 CDS YP_495063.1 87161306 3914802 complement(2613186..2613632) 1 NC_007793.1 identified by match to protein family HMM PF04507; match to protein family HMM TIGR01742; tandem lipoprotein 2613632 3914802 SAUSA300_2429 Staphylococcus aureus subsp. aureus USA300_FPR3757 tandem lipoprotein YP_495063.1 2613186 R 451515 CDS YP_495064.1 87162040 3914316 complement(2613744..2614520) 1 NC_007793.1 identified by match to protein family HMM PF04507; match to protein family HMM TIGR01742; tandem lipoprotein 2614520 3914316 SAUSA300_2430 Staphylococcus aureus subsp. aureus USA300_FPR3757 tandem lipoprotein YP_495064.1 2613744 R 451515 CDS YP_495065.1 87162160 3915191 complement(2614823..2617684) 1 NC_007793.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF04851; putative helicase 2617684 3915191 SAUSA300_2431 Staphylococcus aureus subsp. aureus USA300_FPR3757 putative helicase YP_495065.1 2614823 R 451515 CDS YP_495066.1 87161512 3913225 complement(2617686..2618078) 1 NC_007793.1 identified by match to protein family HMM PF00293; MutT/NUDIX family hydrolase 2618078 3913225 SAUSA300_2432 Staphylococcus aureus subsp. aureus USA300_FPR3757 MutT/NUDIX family hydrolase YP_495066.1 2617686 R 451515 CDS YP_495067.1 87160054 3912907 2618195..2620003 1 NC_007793.1 identified by match to protein family HMM PF00408; match to protein family HMM PF02878; match to protein family HMM PF02879; match to protein family HMM PF02880; phosphoglucomutase/phosphomannomutase family protein 2620003 3912907 SAUSA300_2433 Staphylococcus aureus subsp. aureus USA300_FPR3757 phosphoglucomutase/phosphomannomutase family protein YP_495067.1 2618195 D 451515 CDS YP_495068.1 87160774 3913749 complement(2621327..2622520) 1 NC_007793.1 identified by match to protein family HMM PF07690; transporter protein 2622520 3913749 SAUSA300_2434 Staphylococcus aureus subsp. aureus USA300_FPR3757 transporter protein YP_495068.1 2621327 R 451515 CDS YP_495069.1 87161164 3914510 complement(2622904..2623494) 1 NC_007793.1 identified by similarity to GB:BAB58658.2; match to protein family HMM PF00746; match to protein family HMM PF07501; match to protein family HMM TIGR01167; cell wall surface anchor family protein 2623494 3914510 SAUSA300_2435 Staphylococcus aureus subsp. aureus USA300_FPR3757 cell wall surface anchor family protein YP_495069.1 2622904 R 451515 CDS YP_495070.1 87162069 3914248 complement(2624916..2626250) 1 NC_007793.1 identified by match to protein family HMM PF04650; match to protein family HMM TIGR01168; putative cell wall surface anchor family protein 2626250 3914248 SAUSA300_2436 Staphylococcus aureus subsp. aureus USA300_FPR3757 putative cell wall surface anchor family protein YP_495070.1 2624916 R 451515 CDS YP_495071.1 87162030 3914287 complement(2626556..2626912) 1 NC_007793.1 identified by match to protein family HMM TIGR01889; accessory regulator T 2626912 sarT 3914287 sarT Staphylococcus aureus subsp. aureus USA300_FPR3757 accessory regulator T YP_495071.1 2626556 R 451515 CDS YP_495072.1 87160985 3913317 2627241..2627984 1 NC_007793.1 identified by match to protein family HMM PF01047; match to protein family HMM TIGR01889; accessory regulator U 2627984 sarU 3913317 sarU Staphylococcus aureus subsp. aureus USA300_FPR3757 accessory regulator U YP_495072.1 2627241 D 451515 CDS YP_495073.1 87161812 3914648 complement(2628195..2628977) 1 NC_007793.1 identified by match to protein family HMM PF00483; match to protein family HMM TIGR01099; UTP-glucose-1-phosphate uridylyltransferase 2628977 galU 3914648 galU Staphylococcus aureus subsp. aureus USA300_FPR3757 UTP-glucose-1-phosphate uridylyltransferase YP_495073.1 2628195 R 451515 CDS YP_495074.1 87162339 3913823 complement(2629241..2632063) 1 NC_007793.1 identified by match to protein family HMM PF00746; match to protein family HMM PF02986; match to protein family HMM PF04650; match to protein family HMM TIGR01167; match to protein family HMM TIGR01168; fibronectin binding protein B 2632063 fnbB 3913823 fnbB Staphylococcus aureus subsp. aureus USA300_FPR3757 fibronectin binding protein B YP_495074.1 2629241 R 451515 CDS YP_495075.1 87161146 3913735 complement(2632745..2635801) 1 NC_007793.1 identified by match to protein family HMM PF00746; match to protein family HMM PF02986; match to protein family HMM PF04650; match to protein family HMM TIGR01167; match to protein family HMM TIGR01168; fibronectin binding protein A 2635801 fnbA 3913735 fnbA Staphylococcus aureus subsp. aureus USA300_FPR3757 fibronectin binding protein A YP_495075.1 2632745 R 451515 CDS YP_495076.1 87160554 3913509 complement(2636270..2637628) 1 NC_007793.1 identified by match to protein family HMM PF02447; match to protein family HMM PF03600; match to protein family HMM TIGR00791; gluconate permease 2637628 gntP 3913509 gntP Staphylococcus aureus subsp. aureus USA300_FPR3757 gluconate permease YP_495076.1 2636270 R 451515 CDS YP_495077.1 87162179 3913876 complement(2637745..2639298) 1 NC_007793.1 identified by match to protein family HMM PF00370; match to protein family HMM PF02782; match to protein family HMM TIGR01314; gluconate kinase 2639298 gntK 3913876 gntK Staphylococcus aureus subsp. aureus USA300_FPR3757 gluconate kinase YP_495077.1 2637745 R 451515 CDS YP_495078.1 87161583 3913652 complement(2639322..2640002) 1 NC_007793.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07729; gluconate operon transcriptional repressor 2640002 gntR 3913652 gntR Staphylococcus aureus subsp. aureus USA300_FPR3757 gluconate operon transcriptional repressor YP_495078.1 2639322 R 451515 CDS YP_495079.1 87161788 3914031 complement(2640156..2640920) 1 NC_007793.1 identified by match to protein family HMM PF00376; MerR family transcriptional regulator 2640920 3914031 SAUSA300_2445 Staphylococcus aureus subsp. aureus USA300_FPR3757 MerR family transcriptional regulator YP_495079.1 2640156 R 451515 CDS YP_495080.1 87160878 3912955 complement(2641085..2641777) 1 NC_007793.1 identified by match to protein family HMM PF04607; hypothetical protein 2641777 3912955 SAUSA300_2446 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_495080.1 2641085 R 451515 CDS YP_495081.1 87159987 3914415 complement(2642008..2642496) 1 NC_007793.1 hypothetical protein 2642496 3914415 SAUSA300_2447 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_495081.1 2642008 R 451515 CDS YP_495082.1 87162352 3914201 complement(2642563..2644455) 1 NC_007793.1 identified by match to protein family HMM PF05976; hypothetical protein 2644455 3914201 SAUSA300_2448 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_495082.1 2642563 R 451515 CDS YP_495083.1 87160463 3913064 complement(2644864..2646141) 1 NC_007793.1 identified by match to protein family HMM PF07690; putative transporter 2646141 3913064 SAUSA300_2449 Staphylococcus aureus subsp. aureus USA300_FPR3757 putative transporter YP_495083.1 2644864 R 451515 CDS YP_495084.1 87162438 3915034 2646688..2647299 1 NC_007793.1 DedA family protein 2647299 3915034 SAUSA300_2450 Staphylococcus aureus subsp. aureus USA300_FPR3757 DedA family protein YP_495084.1 2646688 D 451515 CDS YP_495085.1 87161394 3914164 complement(2647396..2648559) 1 NC_007793.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690; drug transporter 2648559 3914164 SAUSA300_2451 Staphylococcus aureus subsp. aureus USA300_FPR3757 drug transporter YP_495085.1 2647396 R 451515 CDS YP_495086.1 87160638 3915073 complement(2648552..2649016) 1 NC_007793.1 identified by match to protein family HMM PF01047; MarR family transcriptional regulator 2649016 3915073 SAUSA300_2452 Staphylococcus aureus subsp. aureus USA300_FPR3757 MarR family transcriptional regulator YP_495086.1 2648552 R 451515 CDS YP_495087.1 87161973 3914485 2649444..2650139 1 NC_007793.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 2650139 3914485 SAUSA300_2453 Staphylococcus aureus subsp. aureus USA300_FPR3757 ABC transporter ATP-binding protein YP_495087.1 2649444 D 451515 CDS YP_495088.1 87161052 3912762 2650141..2650911 1 NC_007793.1 membrane spanning protein 2650911 3912762 SAUSA300_2454 Staphylococcus aureus subsp. aureus USA300_FPR3757 membrane spanning protein YP_495088.1 2650141 D 451515 CDS YP_495089.1 87160828 3913549 2651284..2653248 1 NC_007793.1 identified by match to protein family HMM PF06874; putative fructose-1,6-bisphosphatase 2653248 3913549 SAUSA300_2455 Staphylococcus aureus subsp. aureus USA300_FPR3757 putative fructose-1,6-bisphosphatase YP_495089.1 2651284 D 451515 CDS YP_495090.1 87159929 3914975 2653766..2654671 1 NC_007793.1 hypothetical protein 2654671 3914975 SAUSA300_2456 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_495090.1 2653766 D 451515 CDS YP_495091.1 87162208 3914851 complement(2654776..2655369) 1 NC_007793.1 identified by match to protein family HMM PF02230; phospholipase/carboxylesterase family protein 2655369 3914851 SAUSA300_2457 Staphylococcus aureus subsp. aureus USA300_FPR3757 phospholipase/carboxylesterase family protein YP_495091.1 2654776 R 451515 CDS YP_495092.1 87161353 3912870 complement(2655391..2656263) 1 NC_007793.1 identified by match to protein family HMM PF00903; glyoxylase family protein 2656263 3912870 SAUSA300_2458 Staphylococcus aureus subsp. aureus USA300_FPR3757 glyoxylase family protein YP_495092.1 2655391 R 451515 CDS YP_495093.1 87161071 3914257 complement(2656437..2656871) 1 NC_007793.1 identified by match to protein family HMM PF01047; match to protein family HMM PF01978; MarR family transcriptional regulator 2656871 3914257 SAUSA300_2459 Staphylococcus aureus subsp. aureus USA300_FPR3757 MarR family transcriptional regulator YP_495093.1 2656437 R 451515 CDS YP_495094.1 87160520 3914732 2657098..2657382 1 NC_007793.1 acetyltransferase family protein 2657382 3914732 SAUSA300_2460 Staphylococcus aureus subsp. aureus USA300_FPR3757 acetyltransferase family protein YP_495094.1 2657098 D 451515 CDS YP_495095.1 87161289 3914708 2657553..2658359 1 NC_007793.1 identified by match to protein family HMM PF00903; glyoxalase family protein 2658359 3914708 SAUSA300_2461 Staphylococcus aureus subsp. aureus USA300_FPR3757 glyoxalase family protein YP_495095.1 2657553 D 451515 CDS YP_495096.1 87161631 3913681 complement(2658479..2659150) 1 NC_007793.1 identified by match to protein family HMM PF00881; NAD(P)H-flavin oxidoreductase 2659150 frp 3913681 frp Staphylococcus aureus subsp. aureus USA300_FPR3757 NAD(P)H-flavin oxidoreductase YP_495096.1 2658479 R 451515 CDS YP_495097.1 87161463 3914054 2659357..2660412 1 NC_007793.1 catalyzes the formation of pyruvate from lactate; D-lactate dehydrogenase 2660412 ddh 3914054 ddh Staphylococcus aureus subsp. aureus USA300_FPR3757 D-lactate dehydrogenase YP_495097.1 2659357 D 451515 CDS YP_495098.1 87162065 3914244 complement(2660661..2661461) 1 NC_007793.1 identified by match to protein family HMM PF05116; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484; HAD superfamily hydrolase 2661461 3914244 SAUSA300_2464 Staphylococcus aureus subsp. aureus USA300_FPR3757 HAD superfamily hydrolase YP_495098.1 2660661 R 451515 CDS YP_495099.1 87160615 3913276 2661782..2662417 1 NC_007793.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 2662417 3913276 SAUSA300_2465 Staphylococcus aureus subsp. aureus USA300_FPR3757 ABC transporter ATP-binding protein YP_495099.1 2661782 D 451515 CDS YP_495100.1 87161195 3914906 2662423..2663154 1 NC_007793.1 hypothetical protein 2663154 3914906 SAUSA300_2466 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_495100.1 2662423 D 451515 CDS YP_495101.1 87162373 3913526 complement(2663314..2663934) 1 NC_007793.1 identified by match to protein family HMM PF04203; match to protein family HMM TIGR01076; sortase 2663934 srtA 3913526 srtA Staphylococcus aureus subsp. aureus USA300_FPR3757 sortase YP_495101.1 2663314 R 451515 CDS YP_495102.1 87161768 3913622 2664128..2664619 1 NC_007793.1 identified by match to protein family HMM PF00583; acetyltransferase 2664619 3913622 SAUSA300_2468 Staphylococcus aureus subsp. aureus USA300_FPR3757 acetyltransferase YP_495102.1 2664128 D 451515 CDS YP_495103.1 87162317 3913451 complement(2665406..2666305) 1 NC_007793.1 identified by match to protein family HMM PF03313; match to protein family HMM TIGR00718; L-serine dehydratase, iron-sulfur-dependent, alpha subunit 2666305 sdaAA 3913451 sdaAA Staphylococcus aureus subsp. aureus USA300_FPR3757 L-serine dehydratase, iron-sulfur-dependent, alpha subunit YP_495103.1 2665406 R 451515 CDS YP_495104.1 87160329 3915404 complement(2666319..2666999) 1 NC_007793.1 identified by match to protein family HMM PF03315; match to protein family HMM TIGR00719; L-serine dehydratase, iron-sulfur-dependent, beta subunit 2666999 sdaAB 3915404 sdaAB Staphylococcus aureus subsp. aureus USA300_FPR3757 L-serine dehydratase, iron-sulfur-dependent, beta subunit YP_495104.1 2666319 R 451515 CDS YP_495105.1 87162136 3914683 complement(2667002..2668045) 1 NC_007793.1 perfringolysin O regulator protein 2668045 3914683 SAUSA300_2471 Staphylococcus aureus subsp. aureus USA300_FPR3757 perfringolysin O regulator protein YP_495105.1 2667002 R 451515 CDS YP_495106.1 87160147 3913117 2668955..2669917 1 NC_007793.1 identified by match to protein family HMM PF00892; hypothetical protein 2669917 3913117 SAUSA300_2472 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_495106.1 2668955 D 451515 CDS YP_495107.1 87161822 3914658 complement(2669999..2670967) 1 NC_007793.1 identified by match to protein family HMM PF07859; hypothetical protein 2670967 3914658 SAUSA300_2473 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_495107.1 2669999 R 451515 CDS YP_495108.1 87162302 3913611 complement(2671100..2671444) 1 NC_007793.1 identified by similarity to GB:BAE03833.1; hypothetical protein 2671444 3913611 SAUSA300_2474 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_495108.1 2671100 R 451515 CDS YP_495109.1 87161766 3913620 complement(2671486..2671896) 1 NC_007793.1 hypothetical protein 2671896 3913620 SAUSA300_2475 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_495109.1 2671486 R 451515 CDS YP_495110.1 87160871 3914143 complement(2672276..2674342) 1 NC_007793.1 identified by match to protein family HMM PF00358; match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR00830; match to protein family HMM TIGR02002; phosphotransferase system, glucose-specific IIABC component 2674342 ptsG 3914143 ptsG Staphylococcus aureus subsp. aureus USA300_FPR3757 phosphotransferase system, glucose-specific IIABC component YP_495110.1 2672276 R 451515 CDS YP_495111.1 87160334 3915109 complement(2674643..2676382) 1 NC_007793.1 catalyzes the formation of acetyl phosphate from pyruvate; pyruvate oxidase 2676382 cidC 3915109 cidC Staphylococcus aureus subsp. aureus USA300_FPR3757 pyruvate oxidase YP_495111.1 2674643 R 451515 CDS YP_495112.1 87162027 3914284 complement(2676429..2677118) 1 NC_007793.1 identified by match to protein family HMM PF04172; hypothetical protein 2677118 cidB 3914284 cidB Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_495112.1 2676429 R 451515 CDS YP_495113.1 87161462 3914053 complement(2677111..2677506) 1 NC_007793.1 identified by match to protein family HMM PF03788; holin-like protein cidA 2677506 cidA 3914053 cidA Staphylococcus aureus subsp. aureus USA300_FPR3757 holin-like protein cidA YP_495113.1 2677111 R 451515 CDS YP_495114.1 87161994 3914891 complement(2677719..2678606) 1 NC_007793.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator 2678606 3914891 SAUSA300_2480 Staphylococcus aureus subsp. aureus USA300_FPR3757 LysR family transcriptional regulator YP_495114.1 2677719 R 451515 CDS YP_495115.1 87161762 3913907 2678764..2678982 1 NC_007793.1 identified by match to protein family HMM PF06855; hypothetical protein 2678982 3913907 SAUSA300_2481 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_495115.1 2678764 D 451515 CDS YP_495116.1 87161387 3914157 2679371..2679802 1 NC_007793.1 identified by match to protein family HMM PF05257; hypothetical protein 2679802 3914157 SAUSA300_2482 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_495116.1 2679371 D 451515 CDS YP_495117.1 87161714 3915280 complement(2681398..2682675) 1 NC_007793.1 identified by match to protein family HMM TIGR00532; hydroxymethylglutaryl-CoA reductase 2682675 3915280 SAUSA300_2483 Staphylococcus aureus subsp. aureus USA300_FPR3757 hydroxymethylglutaryl-CoA reductase YP_495117.1 2681398 R 451515 CDS YP_495118.1 87160790 3914610 2682929..2684095 1 NC_007793.1 identified by match to protein family HMM PF01154; match to protein family HMM TIGR01835; hydroxymethylglutaryl-CoA synthase 2684095 3914610 SAUSA300_2484 Staphylococcus aureus subsp. aureus USA300_FPR3757 hydroxymethylglutaryl-CoA synthase YP_495118.1 2682929 D 451515 CDS YP_495119.1 87160163 3914515 complement(2684265..2684786) 1 NC_007793.1 identified by match to protein family HMM PF01035; match to protein family HMM PF02870; match to protein family HMM TIGR00589; methylated DNA-protein cysteine methyltransferase 2684786 3914515 SAUSA300_2485 Staphylococcus aureus subsp. aureus USA300_FPR3757 methylated DNA-protein cysteine methyltransferase YP_495119.1 2684265 R 451515 CDS YP_495120.1 87161831 3913802 2685195..2687300 1 NC_007793.1 identified by match to protein family HMM PF00004; match to protein family HMM PF02151; match to protein family HMM PF07724; putative ATP-dependent Clp proteinase 2687300 3913802 SAUSA300_2486 Staphylococcus aureus subsp. aureus USA300_FPR3757 putative ATP-dependent Clp proteinase YP_495120.1 2685195 D 451515 CDS YP_495121.1 87161280 3915251 complement(2687552..2689546) 1 NC_007793.1 identified by match to protein family HMM PF01926; match to protein family HMM PF02421; match to protein family HMM PF07664; match to protein family HMM PF07670; match to protein family HMM TIGR00231; match to protein family HMM TIGR00437; ferrous iron transport protein B 2689546 feoB 3915251 feoB Staphylococcus aureus subsp. aureus USA300_FPR3757 ferrous iron transport protein B YP_495121.1 2687552 R 451515 CDS YP_495122.1 87160538 3914018 complement(2689558..2689785) 1 NC_007793.1 identified by match to protein family HMM PF04023; ferrous iron transport protein A 2689785 feoA 3914018 feoA Staphylococcus aureus subsp. aureus USA300_FPR3757 ferrous iron transport protein A YP_495122.1 2689558 R 451515 CDS YP_495123.1 87162338 3913822 complement(2690001..2692469) 1 NC_007793.1 identified by match to protein family HMM PF03176; antibiotic transport-associated protein-like protein 2692469 3913822 SAUSA300_2489 Staphylococcus aureus subsp. aureus USA300_FPR3757 antibiotic transport-associated protein-like protein YP_495123.1 2690001 R 451515 CDS YP_495124.1 87162015 3915386 2692635..2693183 1 NC_007793.1 identified by match to protein family HMM PF00440; TetR family regulatory protein 2693183 3915386 SAUSA300_2490 Staphylococcus aureus subsp. aureus USA300_FPR3757 TetR family regulatory protein YP_495124.1 2692635 D 451515 CDS YP_495125.1 87161786 3914029 complement(2693539..2695083) 1 NC_007793.1 catalyzes the conversion of 1-proline-5-carboxylate dehydrogenase to L-glutamate; 1-pyrroline-5-carboxylate dehydrogenase 2695083 3914029 SAUSA300_2491 Staphylococcus aureus subsp. aureus USA300_FPR3757 1-pyrroline-5-carboxylate dehydrogenase YP_495125.1 2693539 R 451515 CDS YP_495126.1 87161930 3914590 complement(2695273..2695872) 1 NC_007793.1 identified by match to protein family HMM PF00132; acetyltransferase family protein 2695872 3914590 SAUSA300_2492 Staphylococcus aureus subsp. aureus USA300_FPR3757 acetyltransferase family protein YP_495126.1 2695273 R 451515 CDS YP_495127.1 87159886 3914107 2696111..2696302 1 NC_007793.1 hypothetical protein 2696302 3914107 SAUSA300_2493 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_495127.1 2696111 D 451515 CDS YP_495128.1 87160837 3913558 2696542..2698950 1 NC_007793.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525; copper-translocating P-type ATPase 2698950 3913558 SAUSA300_2494 Staphylococcus aureus subsp. aureus USA300_FPR3757 copper-translocating P-type ATPase YP_495128.1 2696542 D 451515 CDS YP_495129.1 87161225 3914779 2699241..2699447 1 NC_007793.1 identified by match to protein family HMM PF00403; match to protein family HMM TIGR00003; copper chaperone copZ 2699447 3914779 SAUSA300_2495 Staphylococcus aureus subsp. aureus USA300_FPR3757 copper chaperone copZ YP_495129.1 2699241 D 451515 CDS YP_495130.1 87161652 3913154 complement(2699537..2700535) 1 NC_007793.1 catalyzes the formation of pyruvate from lactate; D-lactate dehydrogenase 2700535 3913154 SAUSA300_2496 Staphylococcus aureus subsp. aureus USA300_FPR3757 D-lactate dehydrogenase YP_495130.1 2699537 R 451515 CDS YP_495131.1 87160109 3913372 complement(2700558..2701712) 1 NC_007793.1 identified by match to protein family HMM PF00155; aminotransferase, class I 2701712 3913372 SAUSA300_2497 Staphylococcus aureus subsp. aureus USA300_FPR3757 aminotransferase, class I YP_495131.1 2700558 R 451515 CDS YP_495132.1 87160393 3912838 complement(2702139..2703647) 1 NC_007793.1 identified by match to protein family HMM PF01266; match to protein family HMM PF01593; match to protein family HMM TIGR02734; squalene synthase 2703647 crtN 3912838 crtN Staphylococcus aureus subsp. aureus USA300_FPR3757 squalene synthase YP_495132.1 2702139 R 451515 CDS YP_495133.1 87161120 3914346 complement(2703659..2704522) 1 NC_007793.1 identified by match to protein family HMM PF00494; squalene desaturase 2704522 crtM 3914346 crtM Staphylococcus aureus subsp. aureus USA300_FPR3757 squalene desaturase YP_495133.1 2703659 R 451515 CDS YP_495134.1 87161216 3912791 complement(2704559..2705686) 1 NC_007793.1 identified by match to protein family HMM PF00535; glycosyl transferase 2705686 3912791 SAUSA300_2500 Staphylococcus aureus subsp. aureus USA300_FPR3757 glycosyl transferase YP_495134.1 2704559 R 451515 CDS YP_495135.1 87160470 3913071 complement(2705692..2707185) 1 NC_007793.1 identified by match to protein family HMM PF01266; match to protein family HMM PF01593; match to protein family HMM TIGR02734; phytoene dehydrogenase 2707185 3913071 SAUSA300_2501 Staphylococcus aureus subsp. aureus USA300_FPR3757 phytoene dehydrogenase YP_495135.1 2705692 R 451515 CDS YP_495136.1 87162238 3914863 complement(2707178..2707666) 1 NC_007793.1 hypothetical protein 2707666 3914863 SAUSA300_2502 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_495136.1 2707178 R 451515 CDS YP_495137.1 87161520 3913194 complement(2707841..2708608) 1 NC_007793.1 identified by match to protein family HMM PF05257; secretory antigen precursor SsaA 2708608 3913194 SAUSA300_2503 Staphylococcus aureus subsp. aureus USA300_FPR3757 secretory antigen precursor SsaA YP_495137.1 2707841 R 451515 CDS YP_495138.1 87160815 3913047 complement(2708969..2710780) 1 NC_007793.1 identified by match to protein family HMM PF01757; acyltransferase 2710780 3913047 SAUSA300_2504 Staphylococcus aureus subsp. aureus USA300_FPR3757 acyltransferase YP_495138.1 2708969 R 451515 CDS YP_495139.1 87160095 3914928 complement(2711291..2711779) 1 NC_007793.1 identified by match to protein family HMM PF00583; acetyltransferase 2711779 3914928 SAUSA300_2505 Staphylococcus aureus subsp. aureus USA300_FPR3757 acetyltransferase YP_495139.1 2711291 R 451515 CDS YP_495140.1 87161940 3914600 complement(2712055..2712756) 1 NC_007793.1 identified by match to protein family HMM PF06737; immunodominant antigen A 2712756 isaA 3914600 isaA Staphylococcus aureus subsp. aureus USA300_FPR3757 immunodominant antigen A YP_495140.1 2712055 R 451515 CDS YP_495141.1 87161239 3914793 complement(2713364..2714419) 1 NC_007793.1 hypothetical protein 2714419 3914793 SAUSA300_2507 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_495141.1 2713364 R 451515 CDS YP_495142.1 87161710 3915276 2714565..2714768 1 NC_007793.1 hypothetical protein 2714768 3915276 SAUSA300_2508 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_495142.1 2714565 D 451515 CDS YP_495143.1 87160650 3913974 2714829..2715398 1 NC_007793.1 identified by match to protein family HMM PF00440; TetR family transcriptional regulator 2715398 3913974 SAUSA300_2509 Staphylococcus aureus subsp. aureus USA300_FPR3757 TetR family transcriptional regulator YP_495143.1 2714829 D 451515 CDS YP_495144.1 87160318 3915393 2715596..2716096 1 NC_007793.1 hypothetical protein 2716096 3915393 SAUSA300_2510 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_495144.1 2715596 D 451515 CDS YP_495145.1 87162422 3915269 2716316..2716546 1 NC_007793.1 identified by match to protein family HMM PF05979; hypothetical protein 2716546 3915269 SAUSA300_2511 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_495145.1 2716316 D 451515 CDS YP_495146.1 87160427 3913145 complement(2716696..2717073) 1 NC_007793.1 identified by match to protein family HMM PF00903; glyoxalase family protein 2717073 3913145 SAUSA300_2512 Staphylococcus aureus subsp. aureus USA300_FPR3757 glyoxalase family protein YP_495146.1 2716696 R 451515 CDS YP_495147.1 87160971 3915366 complement(2717090..2717911) 1 NC_007793.1 identified by match to protein family HMM PF05368; hypothetical protein 2717911 3915366 SAUSA300_2513 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_495147.1 2717090 R 451515 CDS YP_495148.1 87161611 3913466 complement(2717931..2718230) 1 NC_007793.1 hypothetical protein 2718230 3913466 SAUSA300_2514 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_495148.1 2717931 R 451515 CDS YP_495149.1 87162146 3914693 2718361..2718918 1 NC_007793.1 identified by match to protein family HMM PF00440; TetR family transcriptional regulator 2718918 3914693 SAUSA300_2515 Staphylococcus aureus subsp. aureus USA300_FPR3757 TetR family transcriptional regulator YP_495149.1 2718361 D 451515 CDS YP_495150.1 87160785 3914605 2718911..2719615 1 NC_007793.1 identified by match to protein family HMM PF00106; short chain dehydrogenase/reductase family oxidoreductase 2719615 3914605 SAUSA300_2516 Staphylococcus aureus subsp. aureus USA300_FPR3757 short chain dehydrogenase/reductase family oxidoreductase YP_495150.1 2718911 D 451515 CDS YP_495151.1 87161333 3915304 2719713..2720723 1 NC_007793.1 identified by match to protein family HMM PF04909; amidohydrolase family protein 2720723 3915304 SAUSA300_2517 Staphylococcus aureus subsp. aureus USA300_FPR3757 amidohydrolase family protein YP_495151.1 2719713 D 451515 CDS YP_495152.1 87161328 3915299 2720743..2721573 1 NC_007793.1 identified by match to protein family HMM PF00561; hydrolase family protein 2721573 3915299 SAUSA300_2518 Staphylococcus aureus subsp. aureus USA300_FPR3757 hydrolase family protein YP_495152.1 2720743 D 451515 CDS YP_495153.1 87160685 3914179 complement(2721720..2722610) 1 NC_007793.1 identified by match to protein family HMM PF02492; match to protein family HMM PF07683; putative cobalamin synthesis protein 2722610 3914179 SAUSA300_2519 Staphylococcus aureus subsp. aureus USA300_FPR3757 putative cobalamin synthesis protein YP_495153.1 2721720 R 451515 CDS YP_495154.1 87160133 3912986 complement(2722708..2724027) 1 NC_007793.1 identified by match to protein family HMM PF07670; transporter gate domain-containing protein 2724027 3912986 SAUSA300_2520 Staphylococcus aureus subsp. aureus USA300_FPR3757 transporter gate domain-containing protein YP_495154.1 2722708 R 451515 CDS YP_495155.1 87162089 3914632 complement(2724042..2725148) 1 NC_007793.1 identified by match to protein family HMM PF07992; hypothetical protein 2725148 3914632 SAUSA300_2521 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_495155.1 2724042 R 451515 CDS YP_495156.1 87161739 3913025 complement(2725482..2725778) 1 NC_007793.1 hypothetical protein 2725778 3913025 SAUSA300_2522 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_495156.1 2725482 R 451515 CDS YP_495157.1 87160580 3915006 complement(2725766..2726134) 1 NC_007793.1 hypothetical protein 2726134 3915006 SAUSA300_2523 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_495157.1 2725766 R 451515 CDS YP_495158.1 87161966 3914478 complement(2726149..2726427) 1 NC_007793.1 hypothetical protein 2726427 3914478 SAUSA300_2524 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_495158.1 2726149 R 451515 CDS YP_495159.1 87161060 3912770 complement(2726769..2727635) 1 NC_007793.1 identified by match to protein family HMM PF01636; match to protein family HMM PF03881; hypothetical protein 2727635 3912770 SAUSA300_2525 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_495159.1 2726769 R 451515 CDS YP_495160.1 87160831 3913552 2727853..2728917 1 NC_007793.1 catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors; dihydroorotate dehydrogenase 2 2728917 pyrD 3913552 pyrD Staphylococcus aureus subsp. aureus USA300_FPR3757 dihydroorotate dehydrogenase 2 YP_495160.1 2727853 D 451515 CDS YP_495161.1 87159919 3914965 2729072..2729347 1 NC_007793.1 hypothetical protein 2729347 3914965 SAUSA300_2527 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_495161.1 2729072 D 451515 CDS YP_495162.1 87162205 3914848 complement(2729533..2730255) 1 NC_007793.1 identified by match to protein family HMM PF02677; hypothetical protein 2730255 3914848 SAUSA300_2528 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_495162.1 2729533 R 451515 CDS YP_495163.1 87161348 3912865 2730609..2731058 1 NC_007793.1 identified by match to protein family HMM PF00903; match to protein family HMM PF06983; hypothetical protein 2731058 3912865 SAUSA300_2529 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_495163.1 2730609 D 451515 CDS YP_495164.1 87161074 3914260 complement(2731139..2731726) 1 NC_007793.1 TetR family transcriptional regulator 2731726 3914260 SAUSA300_2530 Staphylococcus aureus subsp. aureus USA300_FPR3757 TetR family transcriptional regulator YP_495164.1 2731139 R 451515 CDS YP_495165.1 87161228 3914782 2731859..2733541 1 NC_007793.1 identified by match to protein family HMM PF02129; match to protein family HMM TIGR00976; CocE/NonD family hydrolase 2733541 3914782 SAUSA300_2531 Staphylococcus aureus subsp. aureus USA300_FPR3757 CocE/NonD family hydrolase YP_495165.1 2731859 D 451515 CDS YP_495166.1 87162188 3913885 complement(2733670..2734041) 1 NC_007793.1 Converts L-aspartate to beta-alanine and provides the major route of beta-alanine production in bacteria. Beta-alanine is essential for the biosynthesis of pantothenate (vitamin B5); aspartate alpha-decarboxylase 2734041 panD 3913885 panD Staphylococcus aureus subsp. aureus USA300_FPR3757 aspartate alpha-decarboxylase YP_495166.1 2733670 R 451515 CDS YP_495167.1 87160358 3913232 complement(2734055..2734906) 1 NC_007793.1 catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine; pantoate--beta-alanine ligase 2734906 panC 3913232 panC Staphylococcus aureus subsp. aureus USA300_FPR3757 pantoate--beta-alanine ligase YP_495167.1 2734055 R 451515 CDS YP_495168.1 87162432 3915028 complement(2734899..2735690) 1 NC_007793.1 catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate; 3-methyl-2-oxobutanoate hydroxymethyltransferase 2735690 panB 3915028 panB Staphylococcus aureus subsp. aureus USA300_FPR3757 3-methyl-2-oxobutanoate hydroxymethyltransferase YP_495168.1 2734899 R 451515 CDS YP_495169.1 87159962 3913849 2735790..2736650 1 NC_007793.1 identified by match to protein family HMM PF01210; match to protein family HMM PF02558; match to protein family HMM TIGR00745; 2-dehydropantoate 2-reductase 2736650 panE 3913849 panE Staphylococcus aureus subsp. aureus USA300_FPR3757 2-dehydropantoate 2-reductase YP_495169.1 2735790 D 451515 CDS YP_495170.1 87160991 3913323 complement(2736736..2737440) 1 NC_007793.1 identified by match to protein family HMM PF03306; match to protein family HMM TIGR01252; alpha-acetolactate decarboxylase 2737440 budA 3913323 budA Staphylococcus aureus subsp. aureus USA300_FPR3757 alpha-acetolactate decarboxylase YP_495170.1 2736736 R 451515 CDS YP_495171.1 87161665 3913167 complement(2737718..2738677) 1 NC_007793.1 identified by match to protein family HMM PF00056; match to protein family HMM PF02866; match to protein family HMM TIGR01771; L-lactate dehydrogenase 2738677 3913167 SAUSA300_2537 Staphylococcus aureus subsp. aureus USA300_FPR3757 L-lactate dehydrogenase YP_495171.1 2737718 R 451515 CDS YP_495172.1 87161555 3915170 2739364..2740812 1 NC_007793.1 identified by match to protein family HMM PF00324; amino acid permease family protein 2740812 3915170 SAUSA300_2538 Staphylococcus aureus subsp. aureus USA300_FPR3757 amino acid permease family protein YP_495172.1 2739364 D 451515 CDS YP_495173.1 87162268 3913186 complement(2740893..2742266) 1 NC_007793.1 catalyzes the formation of succinate semialdehyde and glutamate from 4-aminobutanoate and 2-oxoglutarate; 4-aminobutyrate aminotransferase 2742266 3913186 SAUSA300_2539 Staphylococcus aureus subsp. aureus USA300_FPR3757 4-aminobutyrate aminotransferase YP_495173.1 2740893 R 451515 CDS YP_495174.1 87160821 3913542 2743027..2743917 1 NC_007793.1 catalyzes the formation of glycerone phosphate and D-glyceraldehyde 3-phosphate from D-fructose 1,6-bisphosphate in glycolysis; fructose-1,6-bisphosphate aldolase 2743917 3913542 SAUSA300_2540 Staphylococcus aureus subsp. aureus USA300_FPR3757 fructose-1,6-bisphosphate aldolase YP_495174.1 2743027 D 451515 CDS YP_495175.1 87161599 3914383 complement(2744110..2745606) 1 NC_007793.1 malate dehydrogenase; catalyzes the oxidation of malate to oxaloacetate; malate:quinone oxidoreductase 2745606 mqo 3914383 mqo Staphylococcus aureus subsp. aureus USA300_FPR3757 malate:quinone oxidoreductase YP_495175.1 2744110 R 451515 CDS YP_495176.1 87161025 3913941 complement(2746291..2747889) 1 NC_007793.1 identified by match to protein family HMM PF00501; putative AMP-binding enzyme 2747889 3913941 SAUSA300_2542 Staphylococcus aureus subsp. aureus USA300_FPR3757 putative AMP-binding enzyme YP_495176.1 2746291 R 451515 CDS YP_495177.1 87160462 3913063 complement(2748083..2748526) 1 NC_007793.1 identified by match to protein family HMM PF03992; hypothetical protein 2748526 3913063 SAUSA300_2543 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_495177.1 2748083 R 451515 CDS YP_495178.1 87160464 3913065 complement(2748807..2749019) 1 NC_007793.1 identified by match to protein family HMM PF06855; hypothetical protein 2749019 3913065 SAUSA300_2544 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_495178.1 2748807 R 451515 CDS YP_495179.1 87161188 3914899 complement(2749297..2751006) 1 NC_007793.1 catalyzes the oxidation of choline to betaine aldehyde and betain aldehyde to glycine betaine; choline dehydrogenase 2751006 betA 3914899 betA Staphylococcus aureus subsp. aureus USA300_FPR3757 choline dehydrogenase YP_495179.1 2749297 R 451515 CDS YP_495180.1 87160618 3913279 complement(2751267..2752757) 1 NC_007793.1 identified by match to protein family HMM PF00171; match to protein family HMM TIGR01804; glycine betaine aldehyde dehydrogenase 2752757 betB 3913279 betB Staphylococcus aureus subsp. aureus USA300_FPR3757 glycine betaine aldehyde dehydrogenase YP_495180.1 2751267 R 451515 CDS YP_495181.1 87160104 3913367 2753010..2753573 1 NC_007793.1 hypothetical protein 2753573 3913367 SAUSA300_2547 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_495181.1 2753010 D 451515 CDS YP_495182.1 87161177 3914751 complement(2753761..2754447) 1 NC_007793.1 hypothetical protein 2754447 3914751 SAUSA300_2548 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_495182.1 2753761 R 451515 CDS YP_495183.1 87160682 3915059 complement(2754711..2756333) 1 NC_007793.1 identified by match to protein family HMM PF02028; match to protein family HMM TIGR00842; BCCT family choline/carnitine/betaine transporter 2756333 bccT 3915059 bccT Staphylococcus aureus subsp. aureus USA300_FPR3757 BCCT family choline/carnitine/betaine transporter YP_495183.1 2754711 R 451515 CDS YP_495184.1 87160195 3913263 complement(2756852..2757388) 1 NC_007793.1 identified by match to protein family HMM TIGR02491; anaerobic ribonucleotide reductase, small subunit 2757388 nrdG 3913263 nrdG Staphylococcus aureus subsp. aureus USA300_FPR3757 anaerobic ribonucleotide reductase, small subunit YP_495184.1 2756852 R 451515 CDS YP_495185.1 87160844 3913390 complement(2757385..2759235) 1 NC_007793.1 Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates; anaerobic ribonucleoside triphosphate reductase 2759235 nrdD 3913390 nrdD Staphylococcus aureus subsp. aureus USA300_FPR3757 anaerobic ribonucleoside triphosphate reductase YP_495185.1 2757385 R 451515 CDS YP_495186.1 87160093 3914926 complement(2759482..2760852) 1 NC_007793.1 identified by match to protein family HMM PF03600; match to protein family HMM PF06808; match to protein family HMM TIGR00784; citrate transporter, permease 2760852 3914926 SAUSA300_2552 Staphylococcus aureus subsp. aureus USA300_FPR3757 citrate transporter, permease YP_495186.1 2759482 R 451515 CDS YP_495187.1 87160581 3915007 complement(2761345..2761950) 1 NC_007793.1 catalyzes the formation of siroheme from precorrin-2; precorrin-2 dehydrogenase 2761950 3915007 SAUSA300_2553 Staphylococcus aureus subsp. aureus USA300_FPR3757 precorrin-2 dehydrogenase YP_495187.1 2761345 R 451515 CDS YP_495188.1 87160499 3915090 complement(2762013..2763893) 1 NC_007793.1 identified by match to protein family HMM PF00175; match to protein family HMM PF00258; match to protein family HMM PF00667; match to protein family HMM TIGR01931; sulfite reductase flavoprotein 2763893 3915090 SAUSA300_2554 Staphylococcus aureus subsp. aureus USA300_FPR3757 sulfite reductase flavoprotein YP_495188.1 2762013 R 451515 CDS YP_495189.1 87162366 3914215 complement(2764288..2764785) 1 NC_007793.1 identified by match to protein family HMM PF00255; glutathione peroxidase 2764785 3914215 SAUSA300_2555 Staphylococcus aureus subsp. aureus USA300_FPR3757 glutathione peroxidase YP_495189.1 2764288 R 451515 CDS YP_495190.1 87161653 3913155 complement(2766209..2768209) 1 NC_007793.1 identified by match to protein family HMM PF02687; ABC transporter protein 2768209 3913155 SAUSA300_2556 Staphylococcus aureus subsp. aureus USA300_FPR3757 ABC transporter protein YP_495190.1 2766209 R 451515 CDS YP_495191.1 87161871 3914559 complement(2768206..2768961) 1 NC_007793.1 identified by match to protein family HMM PF00005; ABC transporter protein 2768961 3914559 SAUSA300_2557 Staphylococcus aureus subsp. aureus USA300_FPR3757 ABC transporter protein YP_495191.1 2768206 R 451515 CDS YP_495192.1 87161488 3914230 complement(2769069..2769956) 1 NC_007793.1 identified by match to protein family HMM PF02518; nisin susceptibility-associated sensor histidine kinase 2769956 nsaS 3914230 nsaS Staphylococcus aureus subsp. aureus USA300_FPR3757 nisin susceptibility-associated sensor histidine kinase YP_495192.1 2769069 R 451515 CDS YP_495193.1 87160753 3913416 complement(2769967..2770632) 1 NC_007793.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator 2770632 3913416 SAUSA300_2559 Staphylococcus aureus subsp. aureus USA300_FPR3757 DNA-binding response regulator YP_495193.1 2769967 R 451515 CDS YP_495194.1 87161979 3914491 complement(2770658..2770858) 1 NC_007793.1 hypothetical protein 2770858 3914491 SAUSA300_2560 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_495194.1 2770658 R 451515 CDS YP_495195.1 87159995 3914423 2771056..2772480 1 NC_007793.1 identified by match to protein family HMM PF00245; alkaline phosphatase 2772480 phoB 3914423 phoB Staphylococcus aureus subsp. aureus USA300_FPR3757 alkaline phosphatase YP_495195.1 2771056 D 451515 CDS YP_495196.1 87160673 3915050 complement(2772540..2772641) 1 NC_007793.1 hypothetical protein 2772641 3915050 SAUSA300_2562 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_495196.1 2772540 R 451515 CDS YP_495197.1 87161984 3914881 complement(2772763..2773218) 1 NC_007793.1 putative transcriptional regulator 2773218 3914881 SAUSA300_2563 Staphylococcus aureus subsp. aureus USA300_FPR3757 putative transcriptional regulator YP_495197.1 2772763 R 451515 CDS YP_495198.1 87160008 3912919 complement(2773463..2774224) 1 NC_007793.1 identified by match to protein family HMM PF00756; tributyrin esterase 2774224 estA 3912919 estA Staphylococcus aureus subsp. aureus USA300_FPR3757 tributyrin esterase YP_495198.1 2773463 R 451515 CDS YP_495199.1 87160838 3913559 complement(2774340..2777039) 1 NC_007793.1 identified by match to protein family HMM PF00746; match to protein family HMM PF04650; match to protein family HMM TIGR01167; match to protein family HMM TIGR01168; clumping factor B 2777039 clfB 3913559 clfB Staphylococcus aureus subsp. aureus USA300_FPR3757 clumping factor B YP_495199.1 2774340 R 451515 CDS YP_495200.1 87161675 3914440 complement(2777389..2778093) 1 NC_007793.1 identified by match to protein family HMM PF00027; Crp/FNR family transcriptional regulator 2778093 arcR 3914440 arcR Staphylococcus aureus subsp. aureus USA300_FPR3757 Crp/FNR family transcriptional regulator YP_495200.1 2777389 R 451515 CDS YP_495201.1 87161284 3914703 complement(2778192..2779133) 1 NC_007793.1 catalyzes the reversible synthesis of carbamate and ATP from carbamoyl phosphate and ADP; carbamate kinase 2779133 arcC 3914703 arcC Staphylococcus aureus subsp. aureus USA300_FPR3757 carbamate kinase YP_495201.1 2778192 R 451515 CDS YP_495202.1 87160231 3913769 complement(2779150..2780580) 1 NC_007793.1 identified by match to protein family HMM PF00324; match to protein family HMM TIGR00905; arginine/ornithine antiporter 2780580 arcD 3913769 arcD Staphylococcus aureus subsp. aureus USA300_FPR3757 arginine/ornithine antiporter YP_495202.1 2779150 R 451515 CDS YP_495203.1 87161436 3914085 complement(2780671..2781681) 1 NC_007793.1 catalyzes the formation of ornithine and carbamylphosphate from citrulline in the arginine catabolic pathway; ornithine carbamoyltransferase 2781681 arcB 3914085 arcB Staphylococcus aureus subsp. aureus USA300_FPR3757 ornithine carbamoyltransferase YP_495203.1 2780671 R 451515 CDS YP_495204.1 87161630 3913680 complement(2781714..2782949) 1 NC_007793.1 catalyzes the degradation of arginine to citruline and ammonia; arginine deiminase 2782949 arcA 3913680 arcA Staphylococcus aureus subsp. aureus USA300_FPR3757 arginine deiminase YP_495204.1 2781714 R 451515 CDS YP_495205.1 87160099 3914932 complement(2783296..2783745) 1 NC_007793.1 identified by match to protein family HMM PF02863; arginine repressor 2783745 argR 3914932 argR Staphylococcus aureus subsp. aureus USA300_FPR3757 arginine repressor YP_495205.1 2783296 R 451515 CDS YP_495206.1 87160020 3912931 complement(2784112..2785641) 1 NC_007793.1 identified by match to protein family HMM PF01447; match to protein family HMM PF02868; match to protein family HMM PF03413; match to protein family HMM PF07504; zinc metalloproteinase aureolysin 2785641 aur 3912931 aur Staphylococcus aureus subsp. aureus USA300_FPR3757 zinc metalloproteinase aureolysin YP_495206.1 2784112 R 451515 CDS YP_495207.1 87160565 3913520 complement(2786065..2786592) 1 NC_007793.1 immunodominant antigen B 2786592 isaB 3913520 isaB Staphylococcus aureus subsp. aureus USA300_FPR3757 immunodominant antigen B YP_495207.1 2786065 R 451515 CDS YP_495208.1 87160904 3915155 2786850..2787308 1 NC_007793.1 hypothetical protein 2787308 3915155 SAUSA300_2574 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_495208.1 2786850 D 451515 CDS YP_495209.1 87161807 3914643 2787548..2789422 1 NC_007793.1 identified by match to protein family HMM PF00359; match to protein family HMM PF00874; BglG family transcriptional antiterminator 2789422 3914643 SAUSA300_2575 Staphylococcus aureus subsp. aureus USA300_FPR3757 BglG family transcriptional antiterminator YP_495209.1 2787548 D 451515 CDS YP_495210.1 87162010 3915381 2789499..2791451 1 NC_007793.1 identified by match to protein family HMM PF00359; match to protein family HMM PF02378; match to protein family HMM PF02379; match to protein family HMM TIGR00829; match to protein family HMM TIGR00848; match to protein family HMM TIGR01427; phosphotransferase system, fructose-specific IIABC component 2791451 3915381 SAUSA300_2576 Staphylococcus aureus subsp. aureus USA300_FPR3757 phosphotransferase system, fructose-specific IIABC component YP_495210.1 2789499 D 451515 CDS YP_495211.1 87160292 3913500 2791465..2792403 1 NC_007793.1 identified by match to protein family HMM PF01238; match to protein family HMM TIGR00218; mannose-6-phosphate isomerase 2792403 manA 3913500 manA Staphylococcus aureus subsp. aureus USA300_FPR3757 mannose-6-phosphate isomerase YP_495211.1 2791465 D 451515 CDS YP_495212.1 87160541 3914021 complement(2792515..2795496) 1 NC_007793.1 identified by match to protein family HMM PF01061; putative phage infection protein 2795496 3914021 SAUSA300_2578 Staphylococcus aureus subsp. aureus USA300_FPR3757 putative phage infection protein YP_495212.1 2792515 R 451515 CDS YP_495213.1 87161887 3914398 2795707..2797566 1 NC_007793.1 identified by match to protein family HMM PF01832; match to protein family HMM PF05257; N-acetylmuramoyl-L-alanine amidase 2797566 3914398 SAUSA300_2579 Staphylococcus aureus subsp. aureus USA300_FPR3757 N-acetylmuramoyl-L-alanine amidase YP_495213.1 2795707 D 451515 CDS YP_495214.1 87160019 3912930 complement(2797833..2798393) 1 NC_007793.1 identified by match to protein family HMM PF00857; isochorismatase family protein 2798393 3912930 SAUSA300_2580 Staphylococcus aureus subsp. aureus USA300_FPR3757 isochorismatase family protein YP_495214.1 2797833 R 451515 CDS YP_495215.1 87160711 3912826 complement(2798561..2800468) 1 NC_007793.1 putative surface anchored protein 2800468 3912826 SAUSA300_2581 Staphylococcus aureus subsp. aureus USA300_FPR3757 putative surface anchored protein YP_495215.1 2798561 R 451515 CDS YP_495216.1 87161386 3914156 complement(2800710..2802068) 1 NC_007793.1 hypothetical protein 2802068 3914156 SAUSA300_2582 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_495216.1 2800710 R 451515 CDS YP_495217.1 87162252 3913170 complement(2802061..2803569) 1 NC_007793.1 identified by match to protein family HMM PF00534; putative glycosyl transferase 2803569 3913170 SAUSA300_2583 Staphylococcus aureus subsp. aureus USA300_FPR3757 putative glycosyl transferase YP_495217.1 2802061 R 451515 CDS YP_495218.1 87160424 3913142 complement(2803587..2805977) 1 NC_007793.1 functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; in some organisms, especially gram positive pathogens, have paralogs that have been found to be nonessential but do function in secretion of a subset of exported proteins; preprotein translocase subunit SecA 2805977 3913142 SAUSA300_2584 Staphylococcus aureus subsp. aureus USA300_FPR3757 preprotein translocase subunit SecA YP_495218.1 2803587 R 451515 CDS YP_495219.1 87161028 3913944 complement(2805967..2806926) 1 NC_007793.1 hypothetical protein 2806926 3913944 SAUSA300_2585 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_495219.1 2805967 R 451515 CDS YP_495220.1 87161705 3914470 complement(2806904..2808472) 1 NC_007793.1 hypothetical protein 2808472 3914470 SAUSA300_2586 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_495220.1 2806904 R 451515 CDS YP_495221.1 87162149 3914696 complement(2808462..2810015) 1 NC_007793.1 accessory secretory protein Asp1 2810015 3914696 SAUSA300_2587 Staphylococcus aureus subsp. aureus USA300_FPR3757 accessory secretory protein Asp1 YP_495221.1 2808462 R 451515 CDS YP_495222.1 87161870 3914558 complement(2810026..2811237) 1 NC_007793.1 forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY 2811237 secY 3914558 secY Staphylococcus aureus subsp. aureus USA300_FPR3757 preprotein translocase subunit SecY YP_495222.1 2810026 R 451515 CDS YP_495223.1 87161412 3914100 complement(2811367..2818182) 1 NC_007793.1 identified by match to protein family HMM PF00746; match to protein family HMM PF05345; match to protein family HMM TIGR01167; cell wall anchor domain-containing protein 2818182 3914100 SAUSA300_2589 Staphylococcus aureus subsp. aureus USA300_FPR3757 cell wall anchor domain-containing protein YP_495223.1 2811367 R 451515 CDS YP_495224.1 87161529 3913203 complement(2818727..2819419) 1 NC_007793.1 hypothetical protein 2819419 3913203 SAUSA300_2590 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_495224.1 2818727 R 451515 CDS YP_495225.1 87162257 3913175 2819685..2820113 1 NC_007793.1 hypothetical protein 2820113 3913175 SAUSA300_2591 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_495225.1 2819685 D 451515 CDS YP_495226.1 87162277 3915317 2820556..2820915 1 NC_007793.1 hypothetical protein 2820915 3915317 SAUSA300_2592 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_495226.1 2820556 D 451515 CDS YP_495227.1 87160248 3915139 complement(2821000..2821611) 1 NC_007793.1 hypothetical protein 2821611 3915139 SAUSA300_2593 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_495227.1 2821000 R 451515 CDS YP_495228.1 87161447 3914120 complement(2821690..2822166) 1 NC_007793.1 this stereospecific enzymes reduces the S isomer of methionine sulfoxide while MsrB reduces the R form; a fusion protein of this enzyme with MsrB provides protection against oxidative stress in Neisseria gonorrhoeae; methionine sulfoxide reductase A 2822166 msrA 3914120 msrA Staphylococcus aureus subsp. aureus USA300_FPR3757 methionine sulfoxide reductase A YP_495228.1 2821690 R 451515 CDS YP_495229.1 87161991 3914888 complement(2822169..2822669) 1 NC_007793.1 identified by match to protein family HMM PF00583; acetyltransferase 2822669 3914888 SAUSA300_2595 Staphylococcus aureus subsp. aureus USA300_FPR3757 acetyltransferase YP_495229.1 2822169 R 451515 CDS YP_495230.1 87160696 3914190 complement(2822904..2823671) 1 NC_007793.1 identified by match to protein family HMM PF02811; capsular polysaccharide biosynthesis protein Cap1C 2823671 cap1C 3914190 cap1C Staphylococcus aureus subsp. aureus USA300_FPR3757 capsular polysaccharide biosynthesis protein Cap1C YP_495230.1 2822904 R 451515 CDS YP_495231.1 87160161 3914513 complement(2823668..2824360) 1 NC_007793.1 identified by match to protein family HMM TIGR01007; capsular polysaccharide biosynthesis protein Cap1B 2824360 cap1B 3914513 cap1B Staphylococcus aureus subsp. aureus USA300_FPR3757 capsular polysaccharide biosynthesis protein Cap1B YP_495231.1 2823668 R 451515 CDS YP_495232.1 87160242 3915133 complement(2824377..2825039) 1 NC_007793.1 identified by match to protein family HMM PF02706; capsular polysaccharide biosynthesis protein Cap1A 2825039 cap1A 3915133 cap1A Staphylococcus aureus subsp. aureus USA300_FPR3757 capsular polysaccharide biosynthesis protein Cap1A YP_495232.1 2824377 R 451515 CDS YP_495233.1 87160057 3912910 complement(2825887..2826447) 1 NC_007793.1 identified by match to protein family HMM PF00440; intercellular adhesion operon transcription regulator 2826447 tetR 3912910 tetR Staphylococcus aureus subsp. aureus USA300_FPR3757 intercellular adhesion operon transcription regulator YP_495233.1 2825887 R 451515 CDS YP_495234.1 87161717 3915283 2826611..2827849 1 NC_007793.1 predicted polysaccharide polymerase involved in biofilm formation; required for the synthesis of the beta-1,6-N-acetylglucosamine polysaccharide; PgaC; in Yersinia the HmsR protein is an inner membrane protein; N-glycosyltransferase 2827849 icaA 3915283 icaA Staphylococcus aureus subsp. aureus USA300_FPR3757 N-glycosyltransferase YP_495234.1 2826611 D 451515 CDS YP_495235.1 87161208 3912783 2828115..2828987 1 NC_007793.1 identified by match to protein family HMM PF01522; intercellular adhesion protein B 2828987 icaB 3912783 icaB Staphylococcus aureus subsp. aureus USA300_FPR3757 intercellular adhesion protein B YP_495235.1 2828115 D 451515 CDS YP_495236.1 87160919 3914357 2828974..2830026 1 NC_007793.1 intercellular adhesion protein C 2830026 icaC 3914357 icaC Staphylococcus aureus subsp. aureus USA300_FPR3757 intercellular adhesion protein C YP_495236.1 2828974 D 451515 CDS YP_495237.1 87160182 3913250 complement(2830473..2832515) 1 NC_007793.1 identified by match to protein family HMM PF04650; match to protein family HMM TIGR01168; triacylglycerol lipase 2832515 lip 3913250 lip Staphylococcus aureus subsp. aureus USA300_FPR3757 triacylglycerol lipase YP_495237.1 2830473 R 451515 CDS YP_495238.1 87162041 3914317 complement(2833236..2833448) 1 NC_007793.1 hypothetical protein 2833448 3914317 SAUSA300_2604 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_495238.1 2833236 R 451515 CDS YP_495239.1 87161165 3914511 complement(2833608..2834240) 1 NC_007793.1 catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribosyl)-ATP and the subsequent formation of 1-(5-phosphoribosyl)-5-((5- phosphoribosylamino)methylideneamino)imidazole-4- carboxamide from 1-(5-phosphoribosyl)-AMP in histidine biosynthesis; bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase protein 2834240 hisIE 3914511 hisIE Staphylococcus aureus subsp. aureus USA300_FPR3757 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase protein YP_495239.1 2833608 R 451515 CDS YP_495240.1 87161184 3914758 complement(2834237..2834995) 1 NC_007793.1 catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase; imidazole glycerol phosphate synthase subunit HisF 2834995 hisF 3914758 hisF Staphylococcus aureus subsp. aureus USA300_FPR3757 imidazole glycerol phosphate synthase subunit HisF YP_495240.1 2834237 R 451515 CDS YP_495241.1 87160498 3915089 complement(2834992..2835696) 1 NC_007793.1 catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-hosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide; 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase 2835696 hisA 3915089 hisA Staphylococcus aureus subsp. aureus USA300_FPR3757 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase YP_495241.1 2834992 R 451515 CDS YP_495242.1 87162363 3914212 complement(2835689..2836267) 1 NC_007793.1 with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide; imidazole glycerol phosphate synthase subunit HisH 2836267 hisH 3914212 hisH Staphylococcus aureus subsp. aureus USA300_FPR3757 imidazole glycerol phosphate synthase subunit HisH YP_495242.1 2835689 R 451515 CDS YP_495243.1 87160531 3914011 complement(2836264..2836842) 1 NC_007793.1 catalyzes the dehydration of D-erythro-1-(imidazol-4-yl)glycerol 3-phosphate to 3-(imidazol-4-yl)-2-oxopropyl phosphate in histidine biosynthesis; imidazoleglycerol-phosphate dehydratase 2836842 hisB 3914011 hisB Staphylococcus aureus subsp. aureus USA300_FPR3757 imidazoleglycerol-phosphate dehydratase YP_495243.1 2836264 R 451515 CDS YP_495244.1 87161248 3913857 complement(2836811..2837824) 1 NC_007793.1 identified by match to protein family HMM PF00155; histidinol-phosphate aminotransferase hisC 2837824 hisC 3913857 hisC Staphylococcus aureus subsp. aureus USA300_FPR3757 histidinol-phosphate aminotransferase hisC YP_495244.1 2836811 R 451515 CDS YP_495245.1 87161366 3914765 complement(2837840..2839090) 1 NC_007793.1 catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer; histidinol dehydrogenase 2839090 hisD 3914765 hisD Staphylococcus aureus subsp. aureus USA300_FPR3757 histidinol dehydrogenase YP_495245.1 2837840 R 451515 CDS YP_495246.1 87162093 3914636 complement(2839083..2839697) 1 NC_007793.1 short form of enzyme; requires HisZ for function; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms heteromultimer of HisG and HisZ; ATP phosphoribosyltransferase catalytic subunit 2839697 hisG 3914636 hisG Staphylococcus aureus subsp. aureus USA300_FPR3757 ATP phosphoribosyltransferase catalytic subunit YP_495246.1 2839083 R 451515 CDS YP_495247.1 87162290 3915330 complement(2839715..2840533) 1 NC_007793.1 May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine; ATP phosphoribosyltransferase regulatory subunit 2840533 hisZ 3915330 hisZ Staphylococcus aureus subsp. aureus USA300_FPR3757 ATP phosphoribosyltransferase regulatory subunit YP_495247.1 2839715 R 451515 CDS YP_495248.1 87160417 3913135 complement(2840838..2841962) 1 NC_007793.1 identified by match to protein family HMM PF01522; hypothetical protein 2841962 3913135 SAUSA300_2614 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_495248.1 2840838 R 451515 CDS YP_495249.1 87161712 3915278 complement(2842080..2842577) 1 NC_007793.1 hypothetical protein 2842577 3915278 SAUSA300_2615 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_495249.1 2842080 R 451515 CDS YP_495250.1 87162430 3915026 complement(2842624..2843457) 1 NC_007793.1 identified by match to protein family HMM PF02361; cobalt transport family protein 2843457 3915026 SAUSA300_2616 Staphylococcus aureus subsp. aureus USA300_FPR3757 cobalt transport family protein YP_495250.1 2842624 R 451515 CDS YP_495251.1 87159923 3914969 complement(2843454..2845166) 1 NC_007793.1 identified by match to protein family HMM PF00005; putative cobalt ABC transporter ATP-binding protein 2845166 3914969 SAUSA300_2617 Staphylococcus aureus subsp. aureus USA300_FPR3757 putative cobalt ABC transporter ATP-binding protein YP_495251.1 2843454 R 451515 CDS YP_495252.1 87160629 3915064 complement(2845219..2845773) 1 NC_007793.1 identified by match to protein family HMM PF07155; hypothetical protein 2845773 3915064 SAUSA300_2618 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_495252.1 2845219 R 451515 CDS YP_495253.1 87160530 3914010 complement(2845802..2846650) 1 NC_007793.1 identified by match to protein family HMM PF01887; hypothetical protein 2846650 3914010 SAUSA300_2619 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_495253.1 2845802 R 451515 CDS YP_495254.1 87160363 3913237 2847030..2847545 1 NC_007793.1 identified by match to protein family HMM PF04264; hypothetical protein 2847545 3913237 SAUSA300_2620 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_495254.1 2847030 D 451515 CDS YP_495255.1 87161933 3914593 complement(2847694..2848665) 1 NC_007793.1 identified by similarity to GB:AAW53218.1; hypothetical protein 2848665 3914593 SAUSA300_2621 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_495255.1 2847694 R 451515 CDS YP_495256.1 87161246 3913855 2848909..2849865 1 NC_007793.1 identified by match to protein family HMM PF00581; hypothetical protein 2849865 3913855 SAUSA300_2622 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_495256.1 2848909 D 451515 CDS YP_495257.1 87160216 3913089 2850017..2850655 1 NC_007793.1 catalyzes the removal of 5-oxoproline from various penultimate amino acid residues except L-proline; pyrrolidone-carboxylate peptidase 2850655 pcp 3913089 pcp Staphylococcus aureus subsp. aureus USA300_FPR3757 pyrrolidone-carboxylate peptidase YP_495257.1 2850017 D 451515 CDS YP_495258.1 87160132 3912985 complement(2850774..2851541) 1 NC_007793.1 hypothetical protein 2851541 3912985 SAUSA300_2624 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_495258.1 2850774 R 451515 CDS YP_495259.1 87160989 3913321 complement(2851531..2851869) 1 NC_007793.1 identified by match to protein family HMM PF03551; PadR family transcriptional regulator 2851869 3913321 SAUSA300_2625 Staphylococcus aureus subsp. aureus USA300_FPR3757 PadR family transcriptional regulator YP_495259.1 2851531 R 451515 CDS YP_495260.1 87159922 3914968 2852036..2852500 1 NC_007793.1 hypothetical protein 2852500 3914968 SAUSA300_2626 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_495260.1 2852036 D 451515 CDS YP_495261.1 87161946 3913703 2852738..2854156 1 NC_007793.1 identified by match to protein family HMM PF00939; match to protein family HMM PF06808; match to protein family HMM TIGR00785; 2-oxoglutarate/malate translocator 2854156 3913703 SAUSA300_2627 Staphylococcus aureus subsp. aureus USA300_FPR3757 2-oxoglutarate/malate translocator YP_495261.1 2852738 D 451515 CDS YP_495262.1 87162275 3915315 complement(2854569..2855477) 1 NC_007793.1 identified by match to protein family HMM PF00892; match to protein family HMM TIGR00688; RarD protein 2855477 rarD 3915315 rarD Staphylococcus aureus subsp. aureus USA300_FPR3757 RarD protein YP_495262.1 2854569 R 451515 CDS YP_495263.1 87160423 3913141 2855702..2856277 1 NC_007793.1 hypothetical protein 2856277 3913141 SAUSA300_2629 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_495263.1 2855702 D 451515 CDS YP_495264.1 87161537 3914663 2856442..2857458 1 NC_007793.1 identified by match to protein family HMM PF03824; match to protein family HMM TIGR00802; high-affinity nickel-transporter 2857458 nixA 3914663 nixA Staphylococcus aureus subsp. aureus USA300_FPR3757 high-affinity nickel-transporter YP_495264.1 2856442 D 451515 CDS YP_495265.1 87162276 3915316 2857701..2858495 1 NC_007793.1 identified by match to protein family HMM PF00797; putative N-acetyltransferase 2858495 3915316 SAUSA300_2631 Staphylococcus aureus subsp. aureus USA300_FPR3757 putative N-acetyltransferase YP_495265.1 2857701 D 451515 CDS YP_495266.1 87162262 3913180 complement(2858629..2859141) 1 NC_007793.1 hypothetical protein 2859141 3913180 SAUSA300_2632 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_495266.1 2858629 R 451515 CDS YP_495267.1 87161533 3913207 2859424..2860182 1 NC_007793.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 2860182 3913207 SAUSA300_2633 Staphylococcus aureus subsp. aureus USA300_FPR3757 ABC transporter ATP-binding protein YP_495267.1 2859424 D 451515 CDS YP_495268.1 87161913 3913004 2860172..2862052 1 NC_007793.1 identified by match to protein family HMM PF02687; ABC transporter permease 2862052 3913004 SAUSA300_2634 Staphylococcus aureus subsp. aureus USA300_FPR3757 ABC transporter permease YP_495268.1 2860172 D 451515 CDS YP_495269.1 87160053 3912906 2862145..2862336 1 NC_007793.1 hypothetical protein 2862336 3912906 SAUSA300_2635 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_495269.1 2862145 D 451515 CDS YP_495270.1 87160377 3912803 2862348..2862884 1 NC_007793.1 identified by match to protein family HMM PF00665; integrase/recombinase 2862884 3912803 SAUSA300_2636 Staphylococcus aureus subsp. aureus USA300_FPR3757 integrase/recombinase YP_495270.1 2862348 D 451515 CDS YP_495271.1 87161094 3914300 complement(2862944..2863441) 1 NC_007793.1 hypothetical protein 2863441 3914300 SAUSA300_2637 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_495271.1 2862944 R 451515 CDS YP_495272.1 87159928 3914974 2863899..2864090 1 NC_007793.1 hypothetical protein 2864090 3914974 SAUSA300_2638 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_495272.1 2863899 D 451515 CDS YP_495273.1 87160637 3915072 2864456..2864683 1 NC_007793.1 identified by match to protein family HMM PF00313; cold shock protein 2864683 3915072 SAUSA300_2639 Staphylococcus aureus subsp. aureus USA300_FPR3757 cold shock protein YP_495273.1 2864456 D 451515 CDS YP_495274.1 87161562 3915177 complement(2864810..2865379) 1 NC_007793.1 identified by match to protein family HMM PF01381; putative transcriptional regulator 2865379 3915177 SAUSA300_2640 Staphylococcus aureus subsp. aureus USA300_FPR3757 putative transcriptional regulator YP_495274.1 2864810 R 451515 CDS YP_495275.1 87162287 3915327 complement(2865639..2866034) 1 NC_007793.1 hypothetical protein 2866034 3915327 SAUSA300_2641 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_495275.1 2865639 R 451515 CDS YP_495276.1 87160453 3913054 complement(2866102..2866455) 1 NC_007793.1 hypothetical protein 2866455 3913054 SAUSA300_2642 Staphylococcus aureus subsp. aureus USA300_FPR3757 hypothetical protein YP_495276.1 2866102 R 451515 CDS YP_495277.1 87161183 3914757 complement(2866908..2867747) 1 NC_007793.1 identified by match to protein family HMM PF02195; match to protein family HMM TIGR00180; ParB family chromosome partioning protein ParB family 2867747 3914757 SAUSA300_2643 Staphylococcus aureus subsp. aureus USA300_FPR3757 ParB family chromosome partioning protein ParB family YP_495277.1 2866908 R 451515 CDS YP_495278.1 87161954 3913711 complement(2867790..2868509) 1 NC_007793.1 glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA; 16S rRNA methyltransferase GidB 2868509 gidB 3913711 gidB Staphylococcus aureus subsp. aureus USA300_FPR3757 16S rRNA methyltransferase GidB YP_495278.1 2867790 R 451515 CDS YP_495279.2 162138569 3913364 complement(2868509..2870386) 1 NC_007793.1 GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA 2870386 gidA 3913364 gidA Staphylococcus aureus subsp. aureus USA300_FPR3757 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA YP_495279.2 2868509 R 451515 CDS YP_495280.1 87160757 3913420 complement(2870453..2871832) 1 NC_007793.1 in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase TrmE 2871832 trmE 3913420 trmE Staphylococcus aureus subsp. aureus USA300_FPR3757 tRNA modification GTPase TrmE YP_495280.1 2870453 R 451515 CDS YP_495281.1 87161522 3913196 complement(2871971..2872324) 1 NC_007793.1 protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus; this enzyme also cleaves other RNA substrates; ribonuclease P 2872324 rnpA 3913196 rnpA Staphylococcus aureus subsp. aureus USA300_FPR3757 ribonuclease P YP_495281.1 2871971 R 451515 CDS YP_495282.1 87161775 3913629 complement(2872445..2872582) 1 NC_007793.1 in Escherichia coli transcription of this gene is enhanced by polyamines; 50S ribosomal protein L34 2872582 rpmH 3913629 rpmH Staphylococcus aureus subsp. aureus USA300_FPR3757 50S ribosomal protein L34 YP_495282.1 2872445 R 451515 CDS