-- dump date 20140620_071705 -- class Genbank::CDS -- table cds_note -- id note YP_004552210.1 SMART: Chromosomal replication initiator, DnaA C-terminal; ATPase, AAA+ type, core; TIGRFAM: Chromosomal replication control, initiator DnaA; KEGG: sjp:SJA_C1-08240 chromosomal replication initiator protein DnaA; HAMAP: Chromosomal replication control, initiator DnaA; PFAM: Chromosomal replication control, initiator (DnaA)/regulator (Hda); Chromosomal replication initiator, DnaA C-terminal YP_004552211.1 PFAM: Peptidyl-prolyl cis-trans isomerase, cyclophilin-type; KEGG: sjp:SJA_C1-08250 peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family YP_004552212.1 KEGG: sjp:SJA_C1-08260 hypothetical protein YP_004552213.1 TIGRFAM: Tryptophanyl-tRNA synthetase, class Ib; KEGG: sjp:SJA_C1-08270 tryptophanyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class Ib YP_004552214.1 KEGG: sjp:SJA_C1-08280 integral membrane protein MviN; TIGRFAM: Flagellin assembly, membrane protein MviN; PFAM: Flagellin assembly, membrane protein MviN YP_004552215.1 TIGRFAM: Bacterial protein export chaperone SecB; HAMAP: Bacterial protein export chaperone SecB; KEGG: sjp:SJA_C1-08290 preprotein translocase SecB subunit; PFAM: Bacterial protein export chaperone SecB YP_004552216.1 PFAM: Mitochondrial inner membrane translocase complex, subunit Tim44-related; KEGG: sjp:SJA_C1-08300 hypothetical protein YP_004552217.1 PFAM: MltA; 3D; KEGG: sjp:SJA_C1-08310 membrane-bound lytic murein transglycosylase A YP_004552218.1 PFAM: Smr protein/MutS2 C-terminal; KEGG: sjp:SJA_C1-08320 hypothetical protein YP_004552219.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; KEGG: sjp:SJA_C1-08330 PleD related family two-component system response regulator; SMART: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted YP_004552220.1 TIGRFAM: Succinyl-diaminopimelate desuccinylase, proteobacteria; HAMAP: Succinyl-diaminopimelate desuccinylase, proteobacteria; KEGG: sjp:SJA_C1-08340 succinyl-diaminopimelate desuccinylase; PFAM: Peptidase M20; Peptidase M20, dimerisation YP_004552221.1 PFAM: Cupin 2, conserved barrel; KEGG: sjp:SJA_C1-08350 hypothetical protein YP_004552222.1 PFAM: Peptidase S66, LD-carboxypeptidase A; KEGG: sjp:SJA_C1-08360 homolog of microcin C7 resistance protein MccF YP_004552223.1 KEGG: sjp:SJA_C1-08370 hypothetical protein YP_004552224.1 SMART: Histone-like bacterial DNA-binding protein; TIGRFAM: Integration host factor, alpha subunit; KEGG: sjp:SJA_C1-32400 integration host factor alpha subunit; HAMAP: Integration host factor, alpha subunit; PFAM: Histone-like bacterial DNA-binding protein YP_004552225.1 KEGG: sjp:SJA_C1-32410 MerR-family transcriptional regulator; PFAM: HTH transcriptional regulator, MerR; SMART: HTH transcriptional regulator, MerR YP_004552226.1 PFAM: GCN5-related N-acetyltransferase; KEGG: sjp:SJA_C1-32420 putative acetyltransferase YP_004552227.1 PFAM: Phosphoglycerate mutase; KEGG: sjp:SJA_C1-32430 phosphohistidine phosphatase SixA YP_004552228.1 SMART: Helicase, ATP-dependent, c2 type; KEGG: sjp:SJA_C1-32440 ATP-dependent DNA helicase DinG YP_004552229.1 PFAM: Type IV pilus assembly PilZ; KEGG: sjp:SJA_C1-32450 hypothetical protein YP_004552230.1 TIGRFAM: Lysyl-tRNA synthetase, class I; KEGG: sjp:SJA_C1-32460 lysyl-tRNA synthetase; PFAM: Lysyl-tRNA synthetase, class Ic YP_004552231.1 PFAM: Bacterial DNA polymerase III, alpha subunit; PHP, C-terminal; Nucleic acid binding, OB-fold, tRNA/helicase-type; TIGRFAM: DNA polymerase III, alpha subunit; HAMAP: Error-prone DNA polymerase; KEGG: sjp:SJA_C1-11440 DNA polymerase III alpha subunit YP_004552232.1 KEGG: sjp:SJA_C1-11430 putative nucleotidyltransferase YP_004552233.1 manually curated; KEGG: sjp:SJA_C1-11420 hypothetical protein YP_004552234.1 KEGG: sjp:SJA_C1-32490 hypothetical protein YP_004552235.1 PFAM: Oxoglutarate/iron-dependent oxygenase; KEGG: sjp:SJA_C1-32480 putative oxygenase; SMART: Prolyl 4-hydroxylase, alpha subunit YP_004552236.1 KEGG: sjp:SJA_C1-07660 putative ribonuclease; TIGRFAM: Ribonuclease E/G; PFAM: RNA-binding protein AU-1/Ribonuclease E/G; Ribosomal protein S1, RNA binding domain YP_004552237.1 KEGG: sjp:SJA_C1-07670 N-acetylmuramoyl-L-alanine amidase; PFAM: Cell wall hydrolase/autolysin, catalytic; SMART: Cell wall hydrolase/autolysin, catalytic YP_004552238.1 KEGG: sjp:SJA_C1-07680 penicillin binding protein 1A; PFAM: Glycosyl transferase, family 51; Penicillin-binding protein, transpeptidase YP_004552239.1 TIGRFAM: Peptide chain release factor 2; HAMAP: Peptide chain release factor 2, bacterial; KEGG: sjp:SJA_C1-07780 peptide chain release factor RF-2; PFAM: Class I peptide chain release factor; Peptide chain release factor YP_004552240.1 PFAM: Methyltransferase type 11; KEGG: sjp:SJA_C1-07790 ubiquinone/menaquinone biosynthesis methyltransferase YP_004552241.1 PFAM: Type IV pilus assembly PilZ; KEGG: sjp:SJA_C1-07800 hypothetical protein YP_004552242.1 KEGG: sjp:SJA_C1-07810 hypothetical protein YP_004552243.1 KEGG: sjp:SJA_C1-07820 hypothetical protein YP_004552244.1 PFAM: Toxic anion resistance; KEGG: sjp:SJA_C1-07830 putative toxic anion resistance protein YP_004552245.1 KEGG: sjp:SJA_C1-07860 GTP-binding protein; TIGRFAM: GTP-binding protein TypA; Small GTP-binding protein; PFAM: Protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, domain 2; Translation elongation factor EFG/EF2, C-terminal YP_004552246.1 PFAM: Protein of unknown function DUF805; KEGG: xca:xccb100_3174 hypothetical protein YP_004552247.1 PFAM: Na dependent nucleoside transporter, C-terminal; Na dependent nucleoside transporter; Nucleoside recognition; KEGG: sjp:SJA_C1-35180 putative nucleoside permease YP_004552248.1 PFAM: Protein of unknown function DUF1176; KEGG: sjp:SJA_C1-35170 hypothetical protein YP_004552249.1 KEGG: sjp:SJA_C1-35150 hypothetical protein; TIGRFAM: Methyltransferase-like; PFAM: Protein of unknown function DUF2260 YP_004552250.1 KEGG: sjp:SJA_C1-35140 hypothetical protein; TIGRFAM: Conserved hypothetical protein CHP03440; PFAM: Sulphatase-modifying factor YP_004552251.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate cyclase, predicted; KEGG: sjp:SJA_C1-07920 putative diguanylate cyclase; SMART: Diguanylate cyclase, predicted YP_004552252.1 TIGRFAM: Adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase, PduO-type, N-terminal; KEGG: sjp:SJA_C1-07930 putative cobalamin adenosyltransferase; PFAM: Adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase, EutT/PduO type YP_004552253.1 KEGG: sjp:SJA_C1-07940 hypothetical protein YP_004552254.1 PFAM: Glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain; KEGG: sjp:SJA_C1-07950 glutamyl-tRNA synthetase YP_004552255.1 KEGG: sjp:SJA_C1-07960 HNH endonuclease family protein; PFAM: HNH endonuclease; SMART: HNH nuclease YP_004552256.1 KEGG: sjp:SJA_C1-07970 cyclic nucleotide-binding domain protein; PFAM: Cyclic nucleotide-binding; HTH transcriptional regulator, Crp; SMART: Cyclic nucleotide-binding; HTH transcriptional regulator, Crp YP_004552257.1 TIGRFAM: Valyl-tRNA synthetase, class Ia; HAMAP: Valyl-tRNA synthetase; KEGG: sjp:SJA_C1-25060 valyl-tRNA synthetase YP_004552258.1 KEGG: sjp:SJA_C1-25050 MATE efflux family protein; TIGRFAM: Multi antimicrobial extrusion protein MatE; PFAM: Multi antimicrobial extrusion protein MatE YP_004552259.1 PFAM: Protein of unknown function DUF87; KEGG: sjp:SJA_C1-25040 putative ATPase YP_004552260.1 KEGG: sjp:SJA_C1-25030 putative succinyltransferase YP_004552261.1 KEGG: sjp:SJA_C1-25020 putative monooxygenase; TIGRFAM: Luciferase family oxidoreductase, group 1; PFAM: Luciferase-like, subgroup YP_004552262.1 PFAM: Signal transduction histidine kinase, phosphotransfer (Hpt) region; KEGG: sjp:SJA_C1-25010 hypothetical protein YP_004552263.1 KEGG: sjp:SJA_C1-25000 putative redox protein YP_004552264.1 TIGRFAM: GTP-binding, EngA; Small GTP-binding protein; HAMAP: GTP-binding, EngA; KEGG: sjp:SJA_C1-24990 GTP-binding protein EngA; PFAM: GTP-binding protein, HSR1-related YP_004552265.1 KEGG: sjp:SJA_C1-24980 putative PQQ enzyme; PFAM: Pyrrolo-quinoline quinone repeat; SMART: Pyrrolo-quinoline quinone beta-propeller repeat YP_004552266.1 PFAM: Protein of unknown function DUF2133; KEGG: sjp:SJA_C1-24970 hypothetical protein YP_004552267.1 PFAM: Ketopantoate hydroxymethyltransferase; TIGRFAM: Ketopantoate hydroxymethyltransferase; HAMAP: Ketopantoate hydroxymethyltransferase; KEGG: sjp:SJA_C1-24960 3-methyl-2-oxobutanoate hydroxymethyltransferase YP_004552268.1 PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: sjp:SJA_C1-24950 TonB-dependent receptor-like protein YP_004552269.1 PFAM: Protein of unknown function DUF2292; KEGG: sjp:SJA_C1-24930 hypothetical protein YP_004552270.1 PFAM: Protein of unknown function DUF1234; KEGG: sjp:SJA_C1-24920 putative esterase YP_004552271.1 PFAM: Protein of unknown function DUF6, transmembrane; KEGG: sjp:SJA_C1-24890 putative permease YP_004552272.1 KEGG: sjp:SJA_C1-26880 putative methyltransferase YP_004552273.1 PFAM: Type II secretion system protein E; KEGG: sjp:SJA_C1-26870 archaeal flagellar protein FlaI YP_004552274.1 PFAM: ATPase, F1 complex, delta/epsilon subunit, N-terminal; KEGG: sjp:SJA_C1-26860 H+-transporting two-sector ATPase delta/epsilon subunit YP_004552275.1 SMART: ATPase, AAA+ type, core; TIGRFAM: ATPase, F1 complex, beta subunit; KEGG: sjp:SJA_C1-26850 F-type H+-transporting ATPase beta chain; HAMAP: ATPase, F1 complex, beta subunit; PFAM: ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain; ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal; ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal YP_004552276.1 TIGRFAM: ATPase, F1 complex, gamma subunit; HAMAP: ATP synthase gamma chain; KEGG: sjp:SJA_C1-26840 F-type H+-transporting ATPase gamma chain; PFAM: ATPase, F1 complex, gamma subunit YP_004552277.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: sjp:SJA_C1-26830 threonine efflux protein YP_004552278.1 TIGRFAM: ATPase, F1 complex, alpha subunit; HAMAP: ATPase, F1 complex, alpha subunit; KEGG: sjp:SJA_C1-26820 F-type H+-transporting ATPase alpha chain; PFAM: ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain; ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal; ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal YP_004552279.1 TIGRFAM: ATPase, F1 complex, OSCP/delta subunit; HAMAP: ATPase, F1 complex, OSCP/delta subunit; KEGG: sjp:SJA_C1-26810 F-type H+-transporting ATPase oligomycin sensitivity conferral protein; PFAM: ATPase, F1 complex, OSCP/delta subunit YP_004552280.1 PFAM: Peptidase S1/S6, chymotrypsin/Hap; KEGG: sjp:SJA_C1-26800 putative serine protease YP_004552281.1 TIGRFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding; PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding; Ada DNA repair, metal-binding; Helix-turn-helix, AraC type; KEGG: sjp:SJA_C1-26790 Ada regulatory protein; SMART: Helix-turn-helix, AraC domain YP_004552282.1 KEGG: sal:Sala_2280 hypothetical protein YP_004552283.1 TIGRFAM: Primosomal protein n; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; DNA/RNA helicase, C-terminal; KEGG: sjp:SJA_C1-26780 primosomal protein N'; SMART: DEAD-like helicase, N-terminal YP_004552284.1 PFAM: Protein of unknown function DUF2490; KEGG: sjp:SJA_C1-26770 hypothetical protein YP_004552285.1 TIGRFAM: Transaldolase C; HAMAP: transaldolase; KEGG: sjp:SJA_C1-26760 transaldolase; PFAM: Transaldolase YP_004552286.1 KEGG: sjp:SJA_C1-26750 hypothetical protein YP_004552287.1 PFAM: Acyltransferase 3; KEGG: sjp:SJA_C1-24580 putative acyltransferase YP_004552288.1 KEGG: sjp:SJA_C1-05940 GntR-family transcriptional regulator; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: HTH transcriptional regulator, GntR YP_004552289.1 KEGG: sjp:SJA_C1-06020 cytochrome c oxidase subunit XV assembly protein; HAMAP: Heme A synthase; PFAM: Cytochrome oxidase assembly YP_004552290.1 KEGG: sjp:SJA_C1-06030 ribosomal protein L13; TIGRFAM: Ribosomal protein L13, bacterial-type; PFAM: Ribosomal protein L13 YP_004552291.1 PFAM: Ribosomal protein S9; KEGG: sjp:SJA_C1-06040 ribosomal protein S9 YP_004552292.1 PFAM: Cytochrome c-type biogenesis protein CcmB; KEGG: sjp:SJA_C1-27650 heme exporter membrane protein CcmB YP_004552293.1 SMART: ATPase, AAA+ type, core; TIGRFAM: ABC transporter, haem export, CcmA; KEGG: sjp:SJA_C1-27640 heme exporter ATP-binding protein CcmA; PFAM: ABC transporter-like YP_004552294.1 PFAM: Protein of unknown function DUF1025; KEGG: sjp:SJA_C1-27630 hypothetical protein YP_004552295.1 KEGG: sjp:SJA_C1-27620 pterin-4-alpha-carbinolamine dehydratase; HAMAP: pterin-4-alpha-carbinolamine dehydratase; PFAM: Transcriptional coactivator/pterin dehydratase YP_004552296.1 KEGG: sjp:SJA_C1-27610 hypothetical protein YP_004552297.1 KEGG: sjp:SJA_C1-27600 patatin; TIGRFAM: Patatin-related protein; PFAM: Patatin YP_004552298.1 PFAM: Endonuclease/exonuclease/phosphatase; KEGG: sjp:SJA_C1-10490 putative metal-dependent hydrolase YP_004552299.1 KEGG: sjp:SJA_C1-10500 DNA repair protein RadA/Sms; TIGRFAM: DNA repair protein RadA; SMART: ATPase, AAA+ type, core YP_004552300.1 PFAM: Colicin V production protein; KEGG: sjp:SJA_C1-10510 membrane protein required for colicin V production YP_004552301.1 KEGG: hba:Hbal_2845 alcohol dehydrogenase zinc-binding domain protein; PFAM: Alcohol dehydrogenase, zinc-binding; Alcohol dehydrogenase GroES-like YP_004552302.1 KEGG: acr:Acry_1576 acetyl-CoA acetyltransferase; TIGRFAM: Thiolase YP_004552303.1 PFAM: MaoC-like dehydratase; KEGG: sal:Sala_2161 MaoC-like dehydratase YP_004552304.1 PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central region; Acyl-CoA dehydrogenase, N-terminal; KEGG: bac:BamMC406_1258 acyl-CoA dehydrogenase domain-containing protein YP_004552305.1 PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central region; Acyl-CoA dehydrogenase, N-terminal; KEGG: bpy:Bphyt_2738 acyl-CoA dehydrogenase domain protein YP_004552306.1 KEGG: bgf:BC1003_1054 acyl-CoA dehydrogenase domain-containing protein; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, central region YP_004552307.1 PFAM: Thioesterase superfamily; KEGG: bcm:Bcenmc03_1391 thioesterase superfamily protein YP_004552308.1 KEGG: bur:Bcep18194_B1388 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase YP_004552309.1 KEGG: sal:Sala_3068 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; PFAM: 3-hydroxyacyl-CoA dehydrogenase, NAD binding; Crotonase, core; 3-hydroxyacyl-CoA dehydrogenase, C-terminal YP_004552310.1 KEGG: sjp:SJA_C2-02810 carbonyl reductase (NADPH); PFAM: Short-chain dehydrogenase/reductase SDR YP_004552311.1 PFAM: BLUF; KEGG: sjp:SJA_C1-11310 putative BLUF domain protein YP_004552312.1 KEGG: sjp:SJA_C1-11320 hypothetical protein YP_004552313.1 KEGG: sjp:SJA_C1-11330 putative response regulator; PFAM: Signal transduction response regulator, receiver region; Transcription regulator LuxR, C-terminal; SMART: Signal transduction response regulator, receiver region; Transcription regulator LuxR, C-terminal YP_004552315.1 KEGG: sjp:SJA_C1-11350 alpha-glucosidase; PFAM: Glycosyl hydrolase, family 13, catalytic region; SMART: Glycosyl hydrolase, family 13, subfamily, catalytic region YP_004552316.1 PFAM: Sulfatase; KEGG: swi:Swit_2518 sulfatase YP_004552317.1 PFAM: Cytochrome c, class I; KEGG: sjp:SJA_C1-11360 cytochrome c YP_004552318.1 KEGG: sjp:SJA_C1-11370 hypothetical protein YP_004552319.1 PFAM: Cytochrome c oxidase, subunit III; KEGG: sjp:SJA_C1-11380 cytochrome c oxidase subunit III YP_004552320.1 PFAM: Cytochrome c oxidase, subunit III; KEGG: sjp:SJA_C1-11390 cytochrome c oxidase subunit III YP_004552321.1 PFAM: Cytochrome c oxidase, subunit I; KEGG: sjp:SJA_C1-11400 cytochrome c oxidase subunit I YP_004552322.1 PFAM: Cytochrome c oxidase subunit II C-terminal; KEGG: sjp:SJA_C1-11410 cytochrome c oxidase subunit II YP_004552323.1 PFAM: Protein of unknown function DUF2134, membrane; KEGG: sjp:SJA_C1-11450 hypothetical protein YP_004552324.1 KEGG: sjp:SJA_C1-11460 hypothetical protein YP_004552325.1 PFAM: TadE-like; KEGG: sjp:SJA_C1-11470 tight adherence protein TadE YP_004552326.1 KEGG: sjp:SJA_C1-11480 rod shape-determining protein MreB; TIGRFAM: Cell shape determining protein MreB/Mrl; PFAM: Cell shape determining protein MreB/Mrl YP_004552327.1 HAMAP: Fructose-1,6-bisphosphatase; KEGG: sjp:SJA_C1-11490 fructose-1,6-bisphosphatase I; PFAM: Fructose-1,6-bisphosphatase YP_004552328.1 PFAM: Conserved hypothetical protein CHP02186-related, transmembrane; KEGG: sjp:SJA_C1-11510 hypothetical protein YP_004552329.1 PFAM: Protein of unknown function DUF81; KEGG: sjp:SJA_C1-11520 putative permease YP_004552330.1 KEGG: sjp:SJA_C1-11530 hypothetical protein YP_004552331.1 KEGG: sjp:SJA_C1-11540 putative bacteriophage N4 adsorption protein B YP_004552332.1 TIGRFAM: Na+/H+ antiporter NhaA; HAMAP: Na+/H+ antiporter NhaA; KEGG: sjp:SJA_C1-11550 NhaA-family Na+/H+ antiporter; PFAM: Na+/H+ antiporter NhaA YP_004552333.1 KEGG: sjp:SJA_C1-11560 hypothetical protein YP_004552334.1 KEGG: sjp:SJA_C1-11570 hypothetical protein YP_004552335.1 KEGG: sjp:SJA_C1-11580 hypothetical protein YP_004552336.1 PFAM: ATP-grasp fold, succinyl-CoA synthetase-type; ATP-citrate lyase/succinyl-CoA ligase; TIGRFAM: Succinyl-CoA synthetase, beta subunit; HAMAP: Succinyl-CoA ligase [ADP-forming] subunit beta; KEGG: sjp:SJA_C1-11590 succinyl-CoA synthetase beta chain YP_004552337.1 PFAM: Electron transfer flavoprotein, alpha/beta-subunit, N-terminal; KEGG: sjp:SJA_C1-11600 electron transfer flavoprotein beta subunit YP_004552338.1 PFAM: Electron transfer flavoprotein, alpha subunit, C-terminal; Electron transfer flavoprotein, alpha/beta-subunit, N-terminal; KEGG: sjp:SJA_C1-11610 electron transfer flavoprotein alpha subunit YP_004552339.1 PFAM: Rickettsia 17kDa surface antigen; KEGG: sjp:SJA_C1-11620 hypothetical protein YP_004552340.1 KEGG: sjp:SJA_C1-11630 hypothetical protein YP_004552341.1 KEGG: sjp:SJA_C1-11660 hypothetical protein YP_004552343.1 KEGG: acr:Acry_3577 hypothetical protein YP_004552344.1 KEGG: sjp:SJA_C1-11670 hypothetical protein YP_004552345.1 KEGG: dia:Dtpsy_3332 hypothetical protein YP_004552346.1 TIGRFAM: Excinuclease ABC, A subunit; HAMAP: UvrABC system protein A; KEGG: sjp:SJA_C1-11700 excinuclease ABC subunit A; PFAM: ABC transporter-like YP_004552347.1 KEGG: sjp:SJA_C1-11710 rare lipoprotein A; TIGRFAM: Rare lipoprotein A, bacterial; PFAM: Rare lipoprotein A YP_004552348.1 KEGG: sjp:SJA_C1-11730 hypothetical protein YP_004552349.1 KEGG: sjp:SJA_C1-11740 putative response regulator; PFAM: LytTr DNA-binding region; Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region YP_004552350.1 PFAM: Signal transduction histidine kinase, internal region; ATP-binding region, ATPase-like; KEGG: sjp:SJA_C1-11750 two-component system sensor histidine kinase YesM YP_004552351.1 KEGG: sjp:SJA_C1-11760 hypothetical protein YP_004552352.1 KEGG: sjp:SJA_C1-11770 hypothetical protein YP_004552353.1 PFAM: HTH transcriptional regulator, LysR; KEGG: nar:Saro_2514 ModE family transcriptional regulator YP_004552354.1 KEGG: sjp:SJA_C1-11780 hypothetical protein YP_004552355.1 KEGG: sjp:SJA_C1-10990 competence/damage-inducible protein CinA C-terminal domain; TIGRFAM: CinA, C-terminal; PFAM: CinA, C-terminal YP_004552356.1 PFAM: TonB-dependent receptor, beta-barrel; KEGG: ccs:CCNA_00700 TonB-dependent receptor YP_004552357.1 PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: azc:AZC_1913 TonB-dependent receptor YP_004552358.1 KEGG: xcv:XCV3876 putative ABC transporter permease YP_004552359.1 KEGG: xca:xccb100_3903 putative ABC transporter permease YP_004552360.1 KEGG: xop:PXO_04085 ABC transporter ATP-binding protein; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core YP_004552361.1 KEGG: pbr:PB2503_00055 putative TonB-dependent receptor for ferrichrome transport; TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug YP_004552362.1 KEGG: req:REQ_04810 hypothetical protein YP_004552363.1 KEGG: pzu:PHZ_c1556 threonine dehydrogenase; PFAM: Alcohol dehydrogenase, zinc-binding; Alcohol dehydrogenase GroES-like YP_004552364.1 KEGG: hne:HNE_0925 hypothetical protein YP_004552365.1 KEGG: hne:HNE_0924 short chain dehydrogenase/reductase family oxidoreductase; PFAM: Short-chain dehydrogenase/reductase SDR YP_004552366.1 KEGG: pla:Plav_0482 hypothetical protein YP_004552367.1 KEGG: eli:ELI_05750 hypothetical protein; PFAM: Aminoglycoside phosphotransferase; SMART: CHK kinase-like YP_004552368.1 KEGG: bid:Bind_2275 membrane protein-like protein; manually curated; PFAM: Protein of unknown function DUF422 YP_004552369.1 PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: hoh:Hoch_3010 transcriptional regulator, TetR family YP_004552370.1 PFAM: Fatty acid desaturase, type 1; KEGG: nar:Saro_3890 fatty acid desaturase YP_004552371.1 KEGG: cse:Cseg_3351 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase YP_004552372.1 PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: pmy:Pmen_3735 short chain dehydrogenase YP_004552373.1 KEGG: pmy:Pmen_4187 aldehyde dehydrogenase; PFAM: Aldehyde dehydrogenase YP_004552374.1 PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: swi:Swit_1656 TonB-dependent receptor YP_004552375.1 PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: sus:Acid_5697 TetR family transcriptional regulator YP_004552376.1 PFAM: Crotonase, core; KEGG: bbe:BBR47_50020 enoyl-CoA hydratase YP_004552377.1 PFAM: Crotonase, core; KEGG: tte:TTE0544 3-hydroxybutyryl-CoA dehydratase YP_004552378.1 KEGG: tgo:TGME49_034570 peroxisomal multifunctional enzyme type 2, putative; PFAM: Short-chain dehydrogenase/reductase SDR YP_004552379.1 KEGG: ccs:CCNA_03446 acyl-CoA synthetase; PFAM: AMP-dependent synthetase/ligase YP_004552380.1 KEGG: reh:H16_B0224 hypothetical protein YP_004552381.1 PFAM: Thioesterase superfamily; KEGG: rpf:Rpic12D_1853 thioesterase superfamily protein YP_004552382.1 KEGG: mxa:MXAN_5838 short chain dehydrogenase; PFAM: Short-chain dehydrogenase/reductase SDR YP_004552383.1 KEGG: swi:Swit_3603 acyl-CoA dehydrogenase domain-containing protein; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, central region YP_004552384.1 PFAM: 2-nitropropane dioxygenase, NPD; KEGG: swi:Swit_3599 2-nitropropane dioxygenase, NPD YP_004552385.1 KEGG: cse:Cseg_0074 acyl-CoA dehydrogenase domain-containing protein; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, central region YP_004552386.1 KEGG: ccs:CCNA_00075 acetyl-CoA acetyltransferase; TIGRFAM: Thiolase YP_004552387.1 KEGG: cak:Caul_0125 3-hydroxyacyl-CoA dehydrogenase NAD-binding; PFAM: 3-hydroxyacyl-CoA dehydrogenase, NAD binding; Crotonase, core; 3-hydroxyacyl-CoA dehydrogenase, C-terminal YP_004552388.1 KEGG: swi:Swit_3601 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR YP_004552389.1 PFAM: Crotonase, core; KEGG: bsb:Bresu_2021 enoyl-CoA hydratase/isomerase YP_004552390.1 KEGG: psa:PST_1919 alpha-methylacyl-CoA racemase; PFAM: CoA-transferase family III YP_004552391.1 PFAM: Protein of unknown function DUF1486; KEGG: protein of unknown function DUF1486 YP_004552392.1 TIGRFAM: tRNA (guanine-N-7) methyltransferase; HAMAP: tRNA (guanine-N(7)-)-methyltransferase; KEGG: sjp:SJA_C1-12120 tRNA (guanine-N7-)-methyltransferase; PFAM: tRNA (guanine-N-7) methyltransferase YP_004552393.1 KEGG: gdj:Gdia_2762 hypothetical protein YP_004552394.1 TIGRFAM: PAS; PFAM: Chemotaxis methyl-accepting receptor, signalling; PAS fold-3; KEGG: sjp:SJA_C1-12130 putative chemotaxis transducer; SMART: PAC motif YP_004552395.1 PFAM: S-adenosylmethionine synthetase; TIGRFAM: S-adenosylmethionine synthetase; HAMAP: S-adenosylmethionine synthase; KEGG: sjp:SJA_C1-12140 S-adenosylmethionine synthetase YP_004552396.1 TIGRFAM: Apolipoprotein N-acyltransferase; HAMAP: Apolipoprotein N-acyltransferase; KEGG: sjp:SJA_C1-12150 apolipoprotein N-acyltransferase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_004552397.1 PFAM: SNARE associated Golgi protein; KEGG: sjp:SJA_C1-12160 DedA-family protein YP_004552399.1 PFAM: GCN5-related N-acetyltransferase; KEGG: pzu:PHZ_c0097 acetyltransferase YP_004552400.1 KEGG: sjp:SJA_C1-12170 hypothetical protein YP_004552401.1 KEGG: sjp:SJA_C1-12180 hypothetical protein YP_004552402.1 KEGG: sjp:SJA_C1-12190 hypothetical protein YP_004552404.1 PFAM: GCN5-related N-acetyltransferase; KEGG: sjp:SJA_C1-12200 putative acetyltransferase YP_004552405.1 KEGG: sjp:SJA_C1-12210 hypothetical protein YP_004552406.1 KEGG: sjp:SJA_C1-12220 hypothetical protein YP_004552407.1 KEGG: sjp:SJA_C1-12230 hypothetical protein; TIGRFAM: Phage portal protein, HK97; PFAM: Phage portal protein YP_004552408.1 KEGG: sjp:SJA_C1-12240 hypothetical protein YP_004552409.1 KEGG: sjp:SJA_C1-12250 hypothetical protein; TIGRFAM: Peptidase U35, phage prohead HK97; PFAM: Peptidase U35, phage prohead HK97 YP_004552410.1 KEGG: sjp:SJA_C1-12260 hypothetical protein; TIGRFAM: Phage major capsid protein, HK97; PFAM: Phage major capsid protein, HK97 YP_004552411.1 KEGG: sjp:SJA_C1-12270 hypothetical protein YP_004552412.1 KEGG: sjp:SJA_C1-12290 hypothetical protein YP_004552413.1 KEGG: sjp:SJA_C1-12300 hypothetical protein YP_004552414.1 KEGG: sjp:SJA_C1-12310 hypothetical protein; TIGRFAM: Phage major tail protein, TP901-1; PFAM: Phage major tail protein, TP901-1, subfamily 1 YP_004552415.1 KEGG: sjp:SJA_C1-12320 hypothetical protein YP_004552416.1 PFAM: Protein of unknown function DUF2376, phage; KEGG: sjp:SJA_C1-12330 hypothetical protein YP_004552417.1 KEGG: sjp:SJA_C1-12340 hypothetical protein YP_004552418.1 KEGG: sjp:SJA_C1-12350 hypothetical protein; TIGRFAM: Conserved hypothetical protein CHP02217; PFAM: Conserved hypothetical protein CHP02217 YP_004552419.1 KEGG: sjp:SJA_C1-12360 hypothetical protein YP_004552420.1 KEGG: sjp:SJA_C1-12370 hypothetical protein YP_004552421.1 KEGG: sjp:SJA_C1-12380 hypothetical protein YP_004552422.1 KEGG: sjp:SJA_C1-12390 hypothetical protein YP_004552423.1 PFAM: Outer membrane protein, OmpA/MotB, C-terminal; Outer membrane protein, OmpA-like, transmembrane region; KEGG: sjp:SJA_C1-12400 OOP-family protein YP_004552424.1 PFAM: Superoxide dismutase, copper/zinc binding; KEGG: sjp:SJA_C1-12420 Cu/Zn superoxide dismutase YP_004552425.1 KEGG: sjp:SJA_C1-12430 2'-5' RNA ligase; TIGRFAM: 2',5' RNA ligase; PFAM: Phosphoesterase, HXTX YP_004552426.1 PFAM: Uncharacterised protein family UPF0005; KEGG: sjp:SJA_C1-12440 putative integral membrane protein YP_004552427.1 PFAM: Glutathione S-transferase, N-terminal; Glutathione S-transferase, C-terminal; KEGG: sjp:SJA_C1-12450 glutathione S-transferase YP_004552428.1 TIGRFAM: ATP-dependent Clp protease ATP-binding subunit clpA; PFAM: ATPase associated with various cellular activities, AAA-2; Clp, N-terminal; ATPase, AAA-type, core; Clp ATPase, C-terminal; KEGG: sjp:SJA_C1-12460 ATP-dependent Clp protease ATP-binding subunit ClpA; SMART: ATPase, AAA+ type, core YP_004552429.1 PFAM: Protein of unknown function DUF1192; KEGG: swi:Swit_0127 hypothetical protein YP_004552430.1 TIGRFAM: Quinone oxidoreductase putative, PIG3; KEGG: sjp:SJA_C1-12480 putative dehydrogenase/reductase; PFAM: Alcohol dehydrogenase, zinc-binding; Alcohol dehydrogenase GroES-like YP_004552431.1 PFAM: Metallophosphoesterase; KEGG: sjp:SJA_C1-12490 hypothetical protein YP_004552432.1 PFAM: Glycosyl transferase, group 1; KEGG: sjp:SJA_C1-12500 putative glycosyltransferase YP_004552433.1 PFAM: Protein of unknown function DUF1013; KEGG: sjp:SJA_C1-12510 hypothetical protein YP_004552434.1 KEGG: sjp:SJA_C1-12520 long-chain fatty-acid-CoA ligase; PFAM: AMP-dependent synthetase/ligase YP_004552435.1 PFAM: Peptide methionine sulphoxide reductase MsrA; TIGRFAM: Peptide methionine sulphoxide reductase MsrA; HAMAP: Peptide methionine sulphoxide reductase MsrA; KEGG: sjp:SJA_C1-12530 peptide-methionine (S)-S-oxide reductase YP_004552436.1 KEGG: sjp:SJA_C1-12540 hypothetical protein YP_004552437.1 KEGG: sjp:SJA_C1-12550 putative translation factor; TIGRFAM: Sua5/YciO/YrdC/YwlC; PFAM: Sua5/YciO/YrdC, N-terminal; SUA5 YP_004552438.1 PFAM: Protein of unknown function DUF815; KEGG: sjp:SJA_C1-12560 putative ATPase YP_004552439.1 KEGG: sjp:SJA_C1-12570 putative dehydrogenase YP_004552440.1 KEGG: sjp:SJA_C1-12580 hypothetical protein YP_004552441.1 KEGG: sjp:SJA_C1-12600 hypothetical protein YP_004552442.1 TIGRFAM: N-acetyl-gamma-glutamyl-phosphate reductase, subtype; KEGG: sjp:SJA_C1-12610 N-acetyl-gamma-glutamyl-phosphate reductase; PFAM: Semialdehyde dehydrogenase, NAD-binding YP_004552443.1 PFAM: NLP/P60; KEGG: sjp:SJA_C1-12620 putative hydrolase YP_004552444.1 KEGG: sjp:SJA_C1-12630 MarR-family transcriptional regulator; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR YP_004552445.1 PFAM: Peptidase M17, leucyl aminopeptidase, C-terminal; KEGG: sjp:SJA_C1-12640 PepB aminopeptidase YP_004552446.1 KEGG: sjp:SJA_C1-12650 hypothetical protein YP_004552447.1 KEGG: sjp:SJA_C1-12660 hypothetical protein YP_004552448.1 SMART: Elongator protein 3/MiaB/NifB; TIGRFAM: Ribosomal protein S12 methylthiotransferase RimO; Methylthiotransferase; KEGG: sjp:SJA_C1-12670 2-methylthioadenine synthetase; HAMAP: Ribosomal protein S12 methylthiotransferase RimO; PFAM: Methylthiotransferase, N-terminal; Radical SAM YP_004552449.1 TIGRFAM: Survival protein SurE-like phosphatase/nucleotidase; HAMAP: Multifunctional protein surE; KEGG: sjp:SJA_C1-12690 5'-nucleotidase; PFAM: Survival protein SurE-like phosphatase/nucleotidase YP_004552450.1 PFAM: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved region; Seryl-tRNA synthetase, class IIa, N-terminal; TIGRFAM: Seryl-tRNA synthetase, class IIa; HAMAP: Seryl-tRNA synthetase; KEGG: sjp:SJA_C1-12700 seryl-tRNA synthetase YP_004552451.1 PFAM: Host attachment protein; KEGG: sjp:SJA_C1-12710 protein required for attachment to host cells YP_004552452.1 PFAM: PEP-CTERM bacterial; KEGG: nar:Saro_0424 hypothetical protein YP_004552453.1 TIGRFAM: RNA polymerase-binding, DksA; KEGG: sjp:SJA_C1-12730 TraR/DksA-family transcriptional regulator YP_004552454.1 PFAM: Type IV pilus assembly PilZ; KEGG: sjp:SJA_C1-12740 hypothetical protein YP_004552455.1 PFAM: Protein of unknown function DUF465; KEGG: sjp:SJA_C1-12750 hypothetical protein YP_004552456.1 PFAM: Protein of unknown function DUF465; KEGG: sjp:SJA_C1-12760 hypothetical protein YP_004552457.1 KEGG: sjp:SJA_C1-12770 hypothetical protein; manually curated; PFAM: Protein of unknown function DUF1465 YP_004552458.1 PFAM: Bacterial surface antigen (D15); Surface antigen variable number; KEGG: sjp:SJA_C1-12780 outer membrane protein YtfM YP_004552459.1 PFAM: Protein of unknown function DUF490; KEGG: sjp:SJA_C1-12790 hypothetical protein YP_004552460.1 TIGRFAM: Iron-sulphur-dependent L-serine dehydratase single chain form; KEGG: sjp:SJA_C1-12800 L-serine dehydratase; PFAM: Serine dehydratase alpha chain; Serine dehydratase beta chain YP_004552461.1 KEGG: sjp:SJA_C1-12810 putative outer membrane protein YP_004552462.1 TIGRFAM: Orotidine 5'-phosphate decarboxylase, subfamily 1, core; KEGG: sjp:SJA_C1-12820 orotidine-5'-phosphate decarboxylase; PFAM: Orotidine 5'-phosphate decarboxylase, core YP_004552463.1 KEGG: sjp:SJA_C1-12830 hypothetical protein YP_004552464.1 TIGRFAM: Flavoprotein WrbA; HAMAP: Flavoprotein wrbA; KEGG: sjp:SJA_C1-15650 TrpR binding protein WrbA; PFAM: Flavodoxin/nitric oxide synthase YP_004552465.1 PFAM: Pirin, N-terminal; KEGG: sjp:SJA_C1-15660 pirin-related protein YP_004552466.1 KEGG: sjp:SJA_C1-15670 LysR-family transcriptional regulator; manually curated; PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR YP_004552467.1 KEGG: sjp:SJA_C1-15680 OmpR-family two-component system response regulator; PFAM: Signal transduction response regulator, receiver region; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver region YP_004552468.1 KEGG: sjp:SJA_C1-15690 hypothetical protein YP_004552469.1 KEGG: sjp:SJA_C1-15700 hypothetical protein YP_004552470.1 PFAM: Peptidase S8/S53, subtilisin/kexin/sedolisin; KEGG: sjp:SJA_C1-15710 subtilisin-like serine protease YP_004552471.1 KEGG: sjp:SJA_C1-15720 ECF-type sigma factor; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2 YP_004552472.1 KEGG: sjp:SJA_C1-15730 anti-sigma factor YP_004552473.1 PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; KEGG: sjp:SJA_C1-15740 TonB-dependent receptor-like protein YP_004552474.1 PFAM: Metallophosphoesterase; KEGG: sjp:SJA_C1-15750 putative metallophosphoesterase YP_004552475.1 TIGRFAM: Deoxycytidine triphosphate deaminase; HAMAP: Deoxycytidine triphosphate deaminase; KEGG: sjp:SJA_C1-15760 dCTP deaminase YP_004552476.1 KEGG: sjp:SJA_C1-15770 cytidine deaminase; TIGRFAM: Cytidine deaminase, homotetrameric; PFAM: CMP/dCMP deaminase, zinc-binding YP_004552477.1 PFAM: Glycoside hydrolase, family 25; KEGG: sjp:SJA_C1-15780 putative lysozyme YP_004552478.1 KEGG: sjp:SJA_C1-15790 hypothetical protein; HAMAP: Uncharacterised conserved protein UCP032146; PFAM: Uncharacterised conserved protein UCP032146 YP_004552479.1 TIGRFAM: DNA helicase, DnaB type; PFAM: DNA helicase, DnaB-like, C-terminal; DNA helicase, DnaB-like, N-terminal; KEGG: sjp:SJA_C1-15800 replicative DNA helicase; SMART: ATPase, AAA+ type, core YP_004552480.1 KEGG: sjp:SJA_C1-15810 hypothetical protein YP_004552481.1 KEGG: sjp:SJA_C1-15820 phosphoadenosine phosphosulfate reductase; PFAM: Phosphoadenosine phosphosulphate reductase YP_004552482.1 PFAM: Uncharacterised conserved protein UCP030820; KEGG: sjp:SJA_C1-15830 hypothetical protein YP_004552483.1 PFAM: Nitrite/sulphite reductase 4Fe-4S region; Nitrite/sulphite reductase, hemoprotein beta-component, ferrodoxin-like; KEGG: sjp:SJA_C1-15840 ferredoxin-nitrite reductase YP_004552484.1 KEGG: sjp:SJA_C1-15850 hypothetical protein YP_004552485.1 TIGRFAM: Uroporphyrin-III C-methyltransferase, C-terminal; KEGG: sjp:SJA_C1-15860 uroporphyrin-III C-methyltransferase; PFAM: Tetrapyrrole methylase YP_004552486.1 TIGRFAM: Succinylglutamic semialdehyde dehydrogenase; KEGG: sjp:SJA_C1-15870 succinylglutamic semialdehyde dehydrogenase; PFAM: Aldehyde dehydrogenase YP_004552487.1 PFAM: Uncharacterised protein family UPF0061; KEGG: sjp:SJA_C1-15880 hypothetical protein YP_004552488.1 PFAM: Alpha/beta hydrolase fold-1; KEGG: sjp:SJA_C1-15890 putative alpha/beta hydrolase YP_004552489.1 PFAM: Glycosyl transferase, group 1; KEGG: sjp:SJA_C1-15900 putative glycosyltransferase YP_004552490.1 PFAM: 2-nitropropane dioxygenase, NPD; KEGG: sjp:SJA_C1-15910 2-nitropropane dioxygenase family protein YP_004552491.1 PFAM: Protein of unknown function DUF2093; KEGG: sjp:SJA_C1-15920 hypothetical protein YP_004552492.1 KEGG: sjp:SJA_C1-15930 hypothetical protein YP_004552493.1 PFAM: Glutamine cyclotransferase; KEGG: sjp:SJA_C1-15320 glutamine cyclotransferase YP_004552494.1 KEGG: sjp:SJA_C1-15330 aminomethyltransferase; TIGRFAM: Folate-binding, YgfZ; PFAM: Glycine cleavage T-protein, N-terminal YP_004552495.1 TIGRFAM: Dihydroorotase multifunctional complex type; KEGG: sjp:SJA_C1-15340 dihydroorotase; PFAM: Amidohydrolase 1 YP_004552496.1 KEGG: sjp:SJA_C1-15350 chloramphenicol-sensitive protein RarD; TIGRFAM: RarD protein; PFAM: Protein of unknown function DUF6, transmembrane YP_004552497.1 KEGG: sjp:SJA_C1-15380 hypothetical protein YP_004552498.1 PFAM: Homoserine O-succinyltransferase; TIGRFAM: Homoserine O-succinyltransferase; HAMAP: Homoserine O-succinyltransferase; KEGG: sjp:SJA_C1-26590 homoserine O-succinyltransferase YP_004552499.1 KEGG: sjp:SJA_C1-15390 chromosome condensation protein CrcB; HAMAP: CrcB-like protein; PFAM: Camphor resistance CrcB protein YP_004552500.1 KEGG: sjp:SJA_C1-15400 ribosomal large subunit pseudouridine synthase C; TIGRFAM: Pseudouridine synthase, RluC/RluD; PFAM: Pseudouridine synthase, RsuA and RluB/C/D/E/F YP_004552501.1 KEGG: sjp:SJA_C1-15410 phosphoglycolate phosphatase; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase-like hydrolase YP_004552502.1 KEGG: sjp:SJA_C1-15420 hypothetical protein YP_004552503.1 PFAM: ATP12, ATPase F1F0-assembly protein; KEGG: sjp:SJA_C1-15430 ATP synthase mitochondrial F1 complex assembly factor 2 YP_004552504.1 KEGG: sjp:SJA_C1-15460 hypothetical protein YP_004552505.1 KEGG: sjp:SJA_C1-15470 hypothetical protein YP_004552506.1 PFAM: YkuD domain; Peptidoglycan binding-like; KEGG: sjp:SJA_C1-15480 putative peptidoglycan binding domain protein YP_004552507.1 KEGG: sjp:SJA_C1-15490 histone deacetylase family protein; PFAM: Histone deacetylase superfamily YP_004552508.1 KEGG: sjp:SJA_C1-15500 hypothetical protein YP_004552509.1 TIGRFAM: Phosphoribosyl-ATP pyrophosphohydrolase; HAMAP: Phosphoribosyl-ATP pyrophosphatase; KEGG: sjp:SJA_C1-15510 phosphoribosyl-ATP pyrophosphohydrolase; PFAM: Phosphoribosyl-ATP pyrophosphohydrolase YP_004552510.1 KEGG: sjp:SJA_C1-15520 hypothetical protein; TIGRFAM: PEP-CTERM anchor; PFAM: PEP-CTERM bacterial YP_004552511.1 PFAM: Histidine biosynthesis; TIGRFAM: Histidine biosynthesis, HisF; HAMAP: Imidazole glycerol phosphate synthase subunit hisF; KEGG: sjp:SJA_C1-15530 cyclase HisF YP_004552512.1 PFAM: Histidine biosynthesis; TIGRFAM: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; HAMAP: 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; KEGG: sjp:SJA_C1-15540 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase YP_004552513.1 TIGRFAM: Imidazole glycerol phosphate synthase, subunit H; HAMAP: Imidazole glycerol phosphate synthase, subunit H; KEGG: sjp:SJA_C1-15550 amidotransferase HisH; PFAM: Glutamine amidotransferase class-I, C-terminal YP_004552514.1 HAMAP: Imidazoleglycerol-phosphate dehydratase; KEGG: sjp:SJA_C1-15560 imidazoleglycerol-phosphate dehydratase; PFAM: Imidazoleglycerol-phosphate dehydratase YP_004552515.1 KEGG: sjp:SJA_C1-15570 hypothetical protein YP_004552516.1 PFAM: Fumarate lyase; Fumarase C, C-terminal; TIGRFAM: Fumarate hydratase, class II; HAMAP: Fumarate hydratase class II; KEGG: sjp:SJA_C1-15580 fumarate hydratase YP_004552517.1 KEGG: sjp:SJA_C1-15590 hypothetical protein YP_004552518.1 KEGG: sjp:SJA_C1-15600 guanylate kinase; PFAM: Guanylate kinase; TIGRFAM: Guanylate kinase, sub-group; HAMAP: Guanylate kinase, sub-group; SMART: Guanylate kinase/L-type calcium channel region YP_004552519.1 PFAM: Protein of unknown function DUF185; KEGG: sjp:SJA_C1-15610 hypothetical protein YP_004552520.1 TIGRFAM: Prolipoprotein diacylglyceryl transferase; HAMAP: Prolipoprotein diacylglyceryl transferase; KEGG: sjp:SJA_C1-15620 prolipoprotein diacylglyceryltransferase; PFAM: Prolipoprotein diacylglyceryl transferase YP_004552521.1 TIGRFAM: Ribosomal protein L9, bacteria/chloroplast; HAMAP: Ribosomal protein L9, bacteria/chloroplast; KEGG: sjp:SJA_C1-15950 ribosomal protein L9; PFAM: Ribosomal protein L9, N-terminal; Ribosomal protein L9, C-terminal YP_004552522.1 TIGRFAM: Ribosomal protein S18; HAMAP: 30S ribosomal protein S18; KEGG: sjp:SJA_C1-15960 ribosomal protein S18; PFAM: Ribosomal protein S18 YP_004552523.1 TIGRFAM: Ribosomal protein S6; HAMAP: Ribosomal protein S6, bacterial-like; KEGG: sjp:SJA_C1-15970 ribosomal protein S6; PFAM: Ribosomal protein S6, bacterial-like YP_004552524.1 PFAM: Divalent ion symporter; KEGG: sjp:SJA_C1-15980 putative H+/gluconate symporter YP_004552525.1 KEGG: sjp:SJA_C1-15990 hypothetical protein YP_004552526.1 TIGRFAM: Malonyl CoA-acyl carrier protein transacylase; KEGG: sjp:SJA_C1-16040 [acyl-carrier-protein] S-malonyltransferase; PFAM: Acyl transferase YP_004552527.1 PFAM: Crotonase, core; KEGG: sjp:SJA_C1-16050 naphthoate synthase YP_004552528.1 TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; KEGG: sjp:SJA_C1-16060 3-oxoacyl-[acyl-carrier-protein] reductase; PFAM: Short-chain dehydrogenase/reductase SDR YP_004552529.1 KEGG: sjp:SJA_C1-16070 acyl carrier protein; TIGRFAM: Acyl carrier protein (ACP); PFAM: Phosphopantetheine-binding YP_004552530.1 TIGRFAM: 3-oxoacyl-[acyl-carrier-protein] synthase 2; KEGG: sjp:SJA_C1-16080 3-oxoacyl-[acyl-carrier-protein] synthase II; PFAM: Beta-ketoacyl synthase, N-terminal; Beta-ketoacyl synthase, C-terminal YP_004552531.1 KEGG: sjp:SJA_C1-16090 putative aminodeoxychorismate lyase; TIGRFAM: Uncharacterised protein family YceG-like; PFAM: Uncharacterised protein family YceG-like YP_004552532.1 KEGG: sjp:SJA_C1-26580 putative arabinose efflux permease YP_004552533.1 KEGG: sjp:SJA_C1-26570 hypothetical protein YP_004552534.1 KEGG: sjp:SJA_C1-26560 putative dehydrogenase/oxidoreductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_004552535.1 HAMAP: Chaperone protein htpG; PFAM: Heat shock protein Hsp90, C-terminal; ATP-binding region, ATPase-like; KEGG: sjp:SJA_C1-26550 molecular chaperone HtpG; SMART: ATP-binding region, ATPase-like YP_004552536.1 KEGG: sjp:SJA_C1-21240 chromate transport protein ChrA; TIGRFAM: Chromate transporter; PFAM: Chromate transporter region YP_004552537.1 PFAM: Chromate resistance exported protein; KEGG: sjp:SJA_C1-21230 chromate resistance protein ChrB YP_004552538.1 PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: sjp:SJA_C1-21210 TonB-dependent receptor-like protein YP_004552539.1 KEGG: sjp:SJA_C1-21200 membrane dipeptidase; PFAM: Peptidase M19, renal dipeptidase YP_004552540.1 PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: sjp:SJA_C1-32730 TonB-dependent receptor-like protein YP_004552541.1 KEGG: dac:Daci_5356 DsbA oxidoreductase YP_004552542.1 PFAM: SapC; KEGG: sjp:SJA_C1-21090 SapC-like protein YP_004552543.1 KEGG: sjp:SJA_C1-21080 putative dehydrogenase/oxidoreductase; PFAM: FAD-linked oxidase, C-terminal; FAD linked oxidase, N-terminal YP_004552544.1 KEGG: sjp:SJA_C1-21070 hypothetical protein YP_004552545.1 KEGG: sal:Sala_1051 DEAD/DEAH box helicase-like protein; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; DNA/RNA helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal YP_004552546.1 KEGG: sjp:SJA_C1-22690 DNA repair protein RadC; TIGRFAM: DNA repair, RadC-like; PFAM: DNA repair, RadC-like YP_004552547.1 KEGG: sjp:SJA_C1-22680 putative exoprotein YP_004552548.1 KEGG: sjp:SJA_C1-22670 hypothetical protein YP_004552549.1 PFAM: Uncharacterised conserved protein UCP025560; KEGG: sjp:SJA_C1-22660 hypothetical protein YP_004552550.1 KEGG: sjp:SJA_C1-22650 ATP synthase protein I YP_004552551.1 TIGRFAM: ATPase, F0 complex, subunit A; HAMAP: ATP synthase subunit a; KEGG: sjp:SJA_C1-22640 F0F1-type ATP synthase subunit A; PFAM: ATPase, F0 complex, subunit A YP_004552552.1 PFAM: ATPase, F0/V0 complex, subunit C; KEGG: sjp:SJA_C1-22630 F0F1-type ATP synthase subunit C YP_004552553.1 PFAM: ATPase, F0 complex, subunit B/B', bacterial/chloroplast; KEGG: sjp:SJA_C1-22620 F0F1-type ATP synthase subunit b' YP_004552554.1 KEGG: sjp:SJA_C1-22610 F0F1-type ATP synthase subunit B; HAMAP: ATP synthase subunit b; PFAM: ATPase, F0 complex, subunit B/B', bacterial/chloroplast YP_004552555.1 SMART: Excinuclease ABC, C subunit, N-terminal; Helix-hairpin-helix DNA-binding motif, class 1; TIGRFAM: Excinuclease ABC, C subunit; KEGG: sjp:SJA_C1-22600 excinuclease ABC subunit C; HAMAP: UvrABC system protein C; PFAM: Excinuclease ABC, C subunit, C-terminal; Excinuclease ABC, C subunit, N-terminal; UvrB/UvrC protein; Helix-hairpin-helix motif YP_004552556.1 PFAM: ATP-binding region, ATPase-like; KEGG: sjp:SJA_C1-22590 putative signal transduction histidine kinase YP_004552557.1 KEGG: sjp:SJA_C1-22580 hypothetical protein YP_004552558.1 KEGG: sjp:SJA_C1-22550 Flp pilus assembly protein pilin Flp YP_004552559.1 PFAM: Flp/Fap pilin component; KEGG: sjp:SJA_C1-22550 Flp pilus assembly protein pilin Flp YP_004552560.1 KEGG: sjp:SJA_C1-22540 Flp pilus assembly protein CpaB; TIGRFAM: Pilus assembly, Flp-type CpaB; PFAM: SAF domain YP_004552561.1 PFAM: Type II/III secretion system; Transport-associated; KEGG: sjp:SJA_C1-22530 Flp pilus assembly protein secretin CpaC YP_004552562.1 KEGG: sjp:SJA_C1-22520 hypothetical protein YP_004552563.1 KEGG: sjp:SJA_C1-22510 hypothetical protein YP_004552564.1 PFAM: TadE-like; KEGG: sjp:SJA_C1-22500 tight adherance protein TadE YP_004552565.1 PFAM: TadE-like; KEGG: sjp:SJA_C1-22490 tight adherance protein TadE YP_004552566.1 KEGG: sjp:SJA_C1-22480 Flp pilus assembly protein ATPase CpaE YP_004552567.1 KEGG: sjp:SJA_C1-22470 ATPase CpaF; PFAM: Type II secretion system protein E; SMART: ATPase, AAA+ type, core YP_004552568.1 PFAM: Type II secretion system F domain; KEGG: sjp:SJA_C1-22460 Flp pilus assembly protein TadB YP_004552569.1 PFAM: Type II secretion system F domain; KEGG: sjp:SJA_C1-22450 Flp pilus assembly protein TadC YP_004552570.1 KEGG: sjp:SJA_C1-22440 Flp pilus assembly protein TadD; PFAM: Tetratricopeptide TPR2; SMART: Tetratricopeptide repeat YP_004552571.1 PFAM: Tetratricopeptide TPR2; Tetratricopeptide TPR-1; KEGG: sjp:SJA_C1-22430 TPR repeat protein YP_004552572.1 PFAM: Peptidase A24A, prepilin type IV; KEGG: sjp:SJA_C1-22420 Flp pilus assembly protein protease CpaA YP_004552573.1 KEGG: sjp:SJA_C1-22410 NarL-like response regulator; PFAM: Signal transduction response regulator, receiver region; Transcription regulator LuxR, C-terminal; SMART: Signal transduction response regulator, receiver region; Transcription regulator LuxR, C-terminal YP_004552574.1 PFAM: ATP-binding region, ATPase-like; KEGG: sjp:SJA_C1-22400 putative signal transduction histidine kinase YP_004552575.1 TIGRFAM: Recombination protein O, RecO; HAMAP: DNA repair protein recO; KEGG: sjp:SJA_C1-22390 DNA repair protein RecO; PFAM: Recombination protein O, RecO YP_004552576.1 PFAM: Isocitrate/isopropylmalate dehydrogenase; TIGRFAM: Isopropylmalate dehydrogenase; HAMAP: Isopropylmalate dehydrogenase; KEGG: sjp:SJA_C1-22380 3-isopropylmalate dehydrogenase YP_004552577.1 TIGRFAM: O-succinylhomoserine sulfhydrylase; KEGG: sjp:SJA_C1-22370 cystathionine gamma-synthase; PFAM: Cys/Met metabolism, pyridoxal phosphate-dependent enzyme YP_004552578.1 KEGG: sjp:SJA_C1-22360 ApaG protein; HAMAP: Protein ApaG; PFAM: ApaG YP_004552579.1 PFAM: HTH transcriptional regulator, LysR; LysR, substrate-binding; KEGG: sjp:SJA_C1-22350 LysR-family transcriptional regulator YP_004552580.1 KEGG: sjp:SJA_C1-22340 TPR repeat protein YP_004552581.1 TIGRFAM: VCBS repeat domain; KEGG: sjp:SJA_C1-22330 hemolysin-type calcium-binding repeat protein VCBS YP_004552582.1 PFAM: Outer membrane protein, OmpA/MotB, C-terminal; KEGG: sjp:SJA_C1-22320 OmpA-family protein YP_004552583.1 KEGG: sjp:SJA_C1-22310 putative agglutination protein; TIGRFAM: Type I secretion outer membrane protein, TolC; PFAM: Outer membrane efflux protein YP_004552584.1 SMART: ATPase, AAA+ type, core; TIGRFAM: ATPase, type I secretion system; KEGG: sjp:SJA_C1-22300 putative type I secretion protein ATP-binding protein; PFAM: ABC transporter-like; ABC transporter, transmembrane region YP_004552585.1 PFAM: Cell wall hydrolase, SleB; KEGG: sjp:SJA_C1-22290 SleB-like protein YP_004552586.1 KEGG: sjp:SJA_C1-22280 HlyD-family secretion protein; TIGRFAM: Type I secretion membrane fusion protein, HlyD; PFAM: Secretion protein HlyD YP_004552587.1 PFAM: Transglutaminase-like cysteine peptidase, predicted; KEGG: sjp:SJA_C1-22270 hypothetical protein YP_004552588.1 SMART: DNA topoisomerase, type IIA, subunit B or N-terminal; ATP-binding region, ATPase-like; TIGRFAM: DNA topoisomerase IV, subunit B, Gram-negative; KEGG: sjp:SJA_C1-22260 DNA gyrase subunit B; PFAM: DNA topoisomerase, type IIA, subunit B, region 2; ATP-binding region, ATPase-like; DNA topoisomerase, type IIA, subunit B, C-terminal YP_004552589.1 KEGG: sjp:SJA_C1-22250 MarR-family transcriptional regulator; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR YP_004552590.1 KEGG: sjp:SJA_C1-22240 OsmC-like protein; TIGRFAM: Peroxiredoxin, organic hydroperoxide resistance-related; PFAM: Peroxiredoxin, OsmC-like protein YP_004552591.1 PFAM: GcrA cell cycle regulator; KEGG: sjp:SJA_C1-22230 cell cycle regulator GcrA YP_004552592.1 PFAM: ABC-2 type transporter; KEGG: sjp:SJA_C1-22220 ABC-type transport system permease component YP_004552593.1 KEGG: sjp:SJA_C1-22210 hypothetical protein YP_004552594.1 TIGRFAM: Nucleotide sugar dehydrogenase; KEGG: sjp:SJA_C1-22200 UDP-glucose 6-dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase, N-terminal; UDP-glucose/GDP-mannose dehydrogenase, dimerisation; UDP-glucose/GDP-mannose dehydrogenase, C-terminal YP_004552595.1 TIGRFAM: UDP-N-acetylglucosamine 2-epimerase; KEGG: sjp:SJA_C1-22190 UDP-N-acetylglucosamine 2-epimerase; PFAM: UDP-N-acetylglucosamine 2-epimerase YP_004552596.1 TIGRFAM: Nucleotide sugar dehydrogenase; KEGG: sjp:SJA_C1-22180 UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase, N-terminal; UDP-glucose/GDP-mannose dehydrogenase, dimerisation; UDP-glucose/GDP-mannose dehydrogenase, C-terminal YP_004552597.1 PFAM: Polysaccharide export protein; Soluble ligand binding domain; KEGG: sjp:SJA_C1-22170 polysaccharide export outer membrane protein YP_004552598.1 TIGRFAM: Exopolysaccharide synthesis protein; KEGG: sjp:SJA_C1-22160 putative protein-tyrosine kinase; PFAM: Lipopolysaccharide biosynthesis YP_004552599.1 TIGRFAM: Phosphoribosylformylglycinamidine synthase I; HAMAP: Phosphoribosylformylglycinamidine synthase 1; KEGG: sjp:SJA_C1-14670 phosphoribosylformylglycinamidine synthase PurL component YP_004552600.1 KEGG: sjp:SJA_C1-14680 phosphoribosylformylglycinamidine synthase PurS component; TIGRFAM: Phosphoribosylformylglycinamidine synthetase, PurS subunit; PFAM: Phosphoribosylformylglycinamidine synthetase, PurS subunit YP_004552601.1 PFAM: Protein of unknown function DUF81; KEGG: sjp:SJA_C1-14690 putative permease YP_004552602.1 PFAM: SAICAR synthetase; TIGRFAM: SAICAR synthetase; HAMAP: Phosphoribosylaminoimidazole-succinocarboxamide synthase; KEGG: sjp:SJA_C1-14700 phosphoribosylaminoimidazole-succinocarboxamide synthase YP_004552603.1 TIGRFAM: Alpha,alpha-trehalose-phosphate synthase; KEGG: sjp:SJA_C1-14720 alpha,alpha-trehalose-phosphate synthase (UDP-forming); PFAM: Glycosyl transferase, family 20 YP_004552604.1 PFAM: Glycoside hydrolase 15-related; KEGG: sjp:SJA_C1-14730 putative glycosyl hydrolase YP_004552605.1 TIGRFAM: Trehalose-phosphatase; HAD-superfamily hydrolase, subfamily IIB; KEGG: sjp:SJA_C1-14740 trehalose-phosphatase; PFAM: Trehalose-phosphatase YP_004552606.1 KEGG: sjp:SJA_C1-14750 hypothetical protein YP_004552607.1 KEGG: sjp:SJA_C1-14760 LysR-family transcriptional regulator; manually curated; PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR YP_004552608.1 SMART: DNA topoisomerase, type IIA, subunit A or C-terminal; TIGRFAM: DNA topoisomerase IV, subunit A, Gram-negative; KEGG: sjp:SJA_C1-14780 topoisomerase IV subunit A; PFAM: DNA topoisomerase, type IIA, subunit A or C-terminal; DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel YP_004552609.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; KEGG: sjp:SJA_C1-14790 putative signal transduction protein; SMART: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted YP_004552610.1 PFAM: Polynucleotide adenylyltransferase region; KEGG: sjp:SJA_C1-14800 tRNA nucleotidyltransferase (CCA-adding enzyme) YP_004552611.1 PFAM: NUDIX hydrolase domain; KEGG: sjp:SJA_C1-14810 putative NUDIX hydrolase YP_004552612.1 PFAM: Protein of unknown function DUF1285; KEGG: sjp:SJA_C1-14820 hypothetical protein YP_004552613.1 PFAM: Dihydroneopterin aldolase; KEGG: sjp:SJA_C1-14840 putative dihydroneopterin aldolase YP_004552614.1 PFAM: Oxoglutarate/iron-dependent oxygenase; KEGG: sjp:SJA_C1-14850 putative oxygenase/oxidoreductase YP_004552615.1 PFAM: Uncharacterised protein family UPF0310; KEGG: sjp:SJA_C1-14860 hypothetical protein YP_004552616.1 KEGG: sjp:SJA_C1-14870 hypothetical protein YP_004552617.1 PFAM: Rickettsia 17kDa surface antigen; KEGG: sjp:SJA_C1-14880 OmpA-family protein YP_004552618.1 PFAM: Protein of unknown function DUF985; KEGG: sjp:SJA_C1-14890 hypothetical protein YP_004552619.1 KEGG: sjp:SJA_C1-14900 hypothetical protein YP_004552620.1 PFAM: Glycosyl transferase, family 2; KEGG: aav:Aave_0269 glycosyl transferase family protein YP_004552621.1 KEGG: sjp:SJA_C1-14920 hypothetical protein YP_004552622.1 KEGG: sjp:SJA_C1-14930 putative ATPase; PFAM: ATPase, AAA-type, core; SMART: ATPase, AAA+ type, core YP_004552623.1 PFAM: Glycosyl transferase, group 1; KEGG: sjp:SJA_C1-14940 sulfoquinovosyltransferase YP_004552624.1 PFAM: Molybdenum cofactor sulfurase, C-terminal; KEGG: sjp:SJA_C1-14960 hypothetical protein YP_004552625.1 TIGRFAM: Ribonuclease R, bacterial; Ribonuclease II/ribonuclease R, bacteria; KEGG: sjp:SJA_C1-22980 exoribonuclease R; PFAM: Ribonuclease II/R; Ribosomal protein S1, RNA binding domain YP_004552626.1 KEGG: sjp:SJA_C1-22990 hypothetical protein YP_004552627.1 KEGG: sjp:SJA_C1-23000 MATE efflux family protein; TIGRFAM: Multi antimicrobial extrusion protein MatE; PFAM: Multi antimicrobial extrusion protein MatE YP_004552628.1 PFAM: Protein of unknown function DUF808; KEGG: sjp:SJA_C1-23010 hypothetical protein YP_004552629.1 KEGG: sjp:SJA_C1-23020 hypothetical protein YP_004552630.1 manually curated; KEGG: sjp:SJA_C1-23030 hypothetical protein YP_004552631.1 KEGG: sjp:SJA_C1-23040 putative plasmid stabilization system protein YP_004552632.1 TIGRFAM: Formyltetrahydrofolate deformylase; KEGG: sjp:SJA_C1-13460 formyltetrahydrofolate deformylase; PFAM: Formyl transferase, N-terminal; Amino acid-binding ACT YP_004552633.1 KEGG: sjp:SJA_C1-13470 hypothetical protein YP_004552634.1 KEGG: sjp:SJA_C1-13480 Sel1-like TPR repeat protein; PFAM: Sporulation/cell division region, bacteria; Sel1-like; SMART: Sel1-like YP_004552635.1 KEGG: sjp:SJA_C1-13490 ParA-like protein YP_004552636.1 KEGG: sjp:SJA_C1-13500 hypothetical protein YP_004552637.1 PFAM: Sporulation/cell division region, bacteria; KEGG: sjp:SJA_C1-13510 Flp pilus assembly protein TadD YP_004552638.1 PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; KEGG: swi:Swit_4350 TonB-dependent receptor YP_004552639.1 PFAM: Protein of unknown function DUF861, cupin-3; KEGG: pfs:PFLU3279 hypothetical protein YP_004552640.1 PFAM: FAD dependent oxidoreductase; KEGG: esc:Entcl_3243 FAD dependent oxidoreductase YP_004552641.1 PFAM: Amino acid permease-associated region; KEGG: ara:Arad_9755 amino acid permease-associated region YP_004552642.1 SMART: Helix-turn-helix, AraC domain; KEGG: ara:Arad_9754 hypothetical protein YP_004552643.1 KEGG: spe:Spro_0985 phenylacetaldehyde dehydrogenase; PFAM: Aldehyde dehydrogenase YP_004552644.1 PFAM: Homogentisate 1,2-dioxygenase; TIGRFAM: Homogentisate 1,2-dioxygenase; HAMAP: Homogentisate 1,2-dioxygenase; KEGG: swi:Swit_3864 homogentisate 1,2-dioxygenase YP_004552645.1 TIGRFAM: Fumarylacetoacetase; KEGG: sjp:SJA_C2-01590 fumarylacetoacetase; PFAM: Fumarylacetoacetase, N-terminal; Fumarylacetoacetase, C-terminal-like YP_004552646.1 TIGRFAM: Maleylacetoacetate isomerase; KEGG: sjp:SJA_C2-01600 maleylacetoacetate isomerase; PFAM: Glutathione S-transferase, N-terminal; Glutathione S-transferase, C-terminal YP_004552647.1 KEGG: swi:Swit_0775 beta-lactamase domain-containing protein YP_004552648.1 PFAM: Monooxygenase, FAD-binding; KEGG: swi:Swit_0776 FAD-dependent oxidoreductase YP_004552649.1 KEGG: bge:BC1002_6620 hypothetical protein YP_004552650.1 KEGG: swi:Swit_0774 regulatory protein, LuxR; PFAM: Transcription regulator LuxR, C-terminal; SMART: Transcription regulator LuxR, C-terminal YP_004552651.1 KEGG: nar:Saro_0474 sulfatase; PFAM: Sulfatase YP_004552652.1 TIGRFAM: 4-aminobutyrate aminotransferase, bacterial; KEGG: xau:Xaut_4229 4-aminobutyrate aminotransferase; PFAM: Aminotransferase class-III YP_004552653.1 KEGG: nar:Saro_3872 succinic semialdehyde dehydrogenase; PFAM: Aldehyde dehydrogenase YP_004552654.1 PFAM: FAD dependent oxidoreductase; KEGG: bpy:Bphyt_1515 FAD dependent oxidoreductase YP_004552655.1 PFAM: Amidohydrolase 1; KEGG: aha:AHA_1959 amidohydrolase YP_004552656.1 PFAM: Amine oxidase; KEGG: reh:H16_B2453 protoporphyrinogen oxidase YP_004552657.1 PFAM: Major facilitator superfamily MFS-1; KEGG: swi:Swit_0935 major facilitator transporter YP_004552658.1 PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: nar:Saro_0250 TonB-dependent receptor YP_004552659.1 KEGG: bph:Bphy_4871 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase YP_004552660.1 PFAM: Aldehyde dehydrogenase; KEGG: avi:Avi_7686 NAD-dependent succinate aldehyde dehydrogenase YP_004552661.1 PFAM: Amidinotransferase; KEGG: vei:Veis_3194 amidinotransferase YP_004552662.1 TIGRFAM: Amidase, hydantoinase/carbamoylase; KEGG: bgf:BC1003_1071 amidase, hydantoinase/carbamoylase family; PFAM: Peptidase M20; Peptidase M20, dimerisation YP_004552663.1 PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: gpb:HDN1F_33240 transcriptional regulator YP_004552664.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: rlt:Rleg2_4109 transcriptional regulator, LysR family YP_004552665.1 PFAM: Aldehyde dehydrogenase; KEGG: avi:Avi_3559 aldehyde dehydrogenase YP_004552666.1 KEGG: xau:Xaut_2851 resolvase domain-containing protein YP_004552667.1 KEGG: hse:Hsero_1998 hypothetical protein YP_004552668.1 PFAM: O-antigen ligase-related; KEGG: mms:mma_0637 hypothetical protein YP_004552669.1 PFAM: O-antigen ligase-related; KEGG: mei:Msip34_1826 O-antigen polymerase YP_004552670.1 PFAM: Glycosyl transferase, group 1; KEGG: rca:Rcas_3089 group 1 glycosyl transferase YP_004552671.1 KEGG: swi:Swit_2935 hypothetical protein YP_004552672.1 PFAM: Polysaccharide biosynthesis protein; KEGG: mlo:mll5270 succinoglycan transport protein YP_004552673.1 PFAM: Glycosyl transferase, family 2; KEGG: mev:Metev_2289 glycosyl transferase family 2 YP_004552674.1 PFAM: Glycosyl transferase, family 2; KEGG: har:HEAR0718 putative glycosyl transferase YP_004552675.1 PFAM: Transglutaminase-like cysteine peptidase, predicted; KEGG: cse:Cseg_3991 transglutaminase family protein cysteine peptidase BTLCP YP_004552676.1 PFAM: Cell wall hydrolase, SleB; KEGG: sjp:SJA_C1-10180 SleB-like protein YP_004552679.1 PFAM: O-antigen ligase-related; KEGG: pbr:PB2503_06252 hypothetical protein YP_004552681.1 KEGG: pbr:PB2503_06827 hypothetical protein; TIGRFAM: Exopolysaccharide synthesis protein; PFAM: Lipopolysaccharide biosynthesis YP_004552682.1 PFAM: Protein of unknown function DUF2320; KEGG: bsb:Bresu_1144 hypothetical protein YP_004552684.1 PFAM: Polysaccharide export protein; Soluble ligand binding domain; KEGG: pzu:PHZ_c2166 polysaccharide export periplasmic protein YP_004552685.1 PFAM: Glycosyl transferase, group 1; KEGG: pen:PSEEN2449 glycosyl transferase group 1 family protein YP_004552686.1 PFAM: Acyltransferase 3; KEGG: har:HEAR0720 hypothetical protein YP_004552687.1 KEGG: bbt:BBta_1006 serine O-acetyltransferase YP_004552688.1 PFAM: Glycosyl transferase, family 2; KEGG: pen:PSEEN2450 glycosyl transferase group 2 family protein YP_004552690.1 PFAM: Type IV pilus assembly PilZ; KEGG: swi:Swit_3112 type IV pilus assembly PilZ YP_004552691.1 KEGG: sjp:SJA_C1-23170 hypothetical protein YP_004552692.1 PFAM: Glutamine amidotransferase class-I, C-terminal; KEGG: sjp:SJA_C1-23160 glutamine amidotransferase class I YP_004552693.1 PFAM: Glutathione S-transferase, N-terminal; KEGG: sjp:SJA_C1-23150 glutathione S-transferase YP_004552694.1 manually curated; TIGRFAM: Polyhydroxyalkanoate depolymerase; KEGG: sjp:SJA_C1-23140 poly-beta-hydroxyalkanoate depolymerase; PFAM: PHB de-polymerase, C-terminal YP_004552695.1 TIGRFAM: Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; KEGG: sjp:SJA_C1-19160 putative sugar transferase; PFAM: Bacterial sugar transferase YP_004552696.1 KEGG: sjp:SJA_C1-02460 UTP-glucose-1-phosphate uridylyltransferase; PFAM: Nucleotidyl transferase YP_004552697.1 PFAM: Oligosaccharide biosynthesis protein Alg14 like; KEGG: ret:RHE_CH03225 glucuronosyltransferase protein YP_004552698.1 PFAM: Glycosyl transferase, family 28, C-terminal; KEGG: rlt:Rleg2_2975 glycosyltransferase 28 domain YP_004552699.1 KEGG: sjp:SJA_C1-09520 hypothetical protein YP_004552700.1 KEGG: sjp:SJA_C1-09510 hypothetical protein YP_004552701.1 manually curated; KEGG: sjp:SJA_C1-09500 hypothetical protein YP_004552703.1 manually curated; KEGG: sjp:SJA_C1-09490 PgsA-like protein YP_004552706.1 KEGG: sal:Sala_1482 hypothetical protein YP_004552707.1 KEGG: swi:Swit_4644 cold-shock DNA-binding protein family protein; PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein YP_004552710.1 KEGG: rce:RC1_3835 protein TonB; TIGRFAM: TonB, C-terminal; PFAM: Gram-negative bacterial tonB protein YP_004552711.1 KEGG: aex:Astex_0871 TonB-dependent heme/hemoglobin receptor family protein; TIGRFAM: TonB-dependent haem/haemoglobin receptor; TonB-dependent haemoglobin/transferrin/lactoferrin receptor; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel YP_004552712.1 PFAM: Nickel transport complex, NikM subunit, transmembrane; KEGG: ccs:CCNA_02275 hypothetical protein YP_004552713.1 KEGG: cak:Caul_1114 hypothetical protein YP_004552714.1 KEGG: azl:AZL_004810 iron complex outermembrane recepter protein; TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug YP_004552715.1 PFAM: PepSY-associated TM helix; KEGG: rpx:Rpdx1_0244 PepSY-associated TM helix domain-containing protein YP_004552716.1 PFAM: Transposase, IS116/IS110/IS902; Transposase, IS111A/IS1328/IS1533; KEGG: pzu:PHZ_p0321 transposase, IS1111A/IS1328/IS1533 YP_004552717.1 HAMAP: inorganic polyphosphate/ATP-NAD kinase; KEGG: sjp:SJA_C1-14140 NAD+ kinase; PFAM: ATP-NAD/AcoX kinase YP_004552718.1 TIGRFAM: Molybdenum cofactor biosynthesis protein A; PFAM: Radical SAM; Molybdenum cofactor synthesis C-terminal; KEGG: sjp:SJA_C1-14150 molybdenum cofactor biosynthesis protein A; SMART: Elongator protein 3/MiaB/NifB YP_004552719.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; KEGG: sjp:SJA_C1-14160 putative diguanylate cyclase/phosphodiesterase; SMART: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted YP_004552720.1 TIGRFAM: Conserved hypothetical protein CHP02001; KEGG: sjp:SJA_C1-14170 hypothetical protein YP_004552721.1 KEGG: sjp:SJA_C1-14180 hypothetical protein YP_004552722.1 TIGRFAM: Transcription-repair coupling factor; PFAM: Transcription factor CarD; DNA/RNA helicase, DEAD/DEAH box type, N-terminal; DNA/RNA helicase, C-terminal; Transcription-repair-coupling factor; KEGG: sjp:SJA_C1-14190 transcription-repair coupling factor; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal YP_004552723.1 PFAM: Protein of unknown function DUF339; KEGG: sjp:SJA_C1-14200 hypothetical protein YP_004552724.1 KEGG: sjp:SJA_C1-14210 ATP-dependent DNA helicase RecG; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; DNA/RNA helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal YP_004552725.1 PFAM: Mechanosensitive ion channel MscS; KEGG: sjp:SJA_C1-14230 putative small-conductance mechanosensitive channel YP_004552726.1 PFAM: Type IV pilus assembly PilZ; KEGG: sjp:SJA_C1-14240 hypothetical protein YP_004552727.1 PFAM: Aminoacyl-tRNA synthetase, class Ib; RNA-binding S4; TIGRFAM: Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial; HAMAP: Tyrosyl-tRNA synthetase; KEGG: sjp:SJA_C1-14250 tyrosyl-tRNA synthetase YP_004552728.1 KEGG: sjp:SJA_C1-14260 anhydro-N-acetylmuramic acid kinase; HAMAP: Anhydro-N-acetylmuramic acid kinase; PFAM: Anhydro-N-acetylmuramic acid kinase YP_004552729.1 KEGG: nar:Saro_0830 cell wall surface anchor family protein YP_004552730.1 KEGG: nar:Saro_0829 hypothetical protein YP_004552731.1 KEGG: sjp:SJA_C1-14270 hypothetical protein YP_004552732.1 KEGG: sjp:SJA_C1-14280 putative methyl-accepting chemotaxis protein; PFAM: Chemotaxis methyl-accepting receptor, signalling; SMART: Chemotaxis methyl-accepting receptor, signalling YP_004552733.1 KEGG: sjp:SJA_C1-14290 hypothetical protein YP_004552734.1 PFAM: Glutathione-dependent formaldehyde-activating, GFA; KEGG: sjp:SJA_C1-14300 hypothetical protein YP_004552735.1 KEGG: sjp:SJA_C1-14310 putative AAA ATPase; PFAM: ATPase associated with various cellular activities, AAA-5; SMART: ATPase, AAA+ type, core YP_004552736.1 KEGG: sjp:SJA_C1-14320 hypothetical protein YP_004552737.1 KEGG: sjp:SJA_C1-14330 RNA polymerase primary sigma factor; TIGRFAM: RNA polymerase sigma factor RpoD, C-terminal; RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 3; RNA polymerase sigma factor 70, region 1.1; RNA polymerase sigma-70 region 1.2; RNA polymerase sigma factor 70, non-essential region; RNA polymerase sigma-70 region 2; RNA polymerase sigma-70 region 4 YP_004552738.1 KEGG: sjp:SJA_C1-14340 DNA primase; TIGRFAM: DNA primase, DnaG; PFAM: DNA primase, catalytic core, N-terminal; Zinc finger, CHC2-type; Toprim domain YP_004552739.1 PFAM: Protein of unknown function DUF559; KEGG: swi:Swit_0433 hypothetical protein YP_004552740.1 KEGG: sjp:SJA_C1-14360 GatB/YqeY-like uncharacterized conserved protein YP_004552741.1 TIGRFAM: Carbamoyl phosphate synthase, small subunit; KEGG: sjp:SJA_C1-14370 carbamoyl-phosphate synthase small chain; PFAM: Glutamine amidotransferase class-I, C-terminal; Carbamoyl phosphate synthase, small subunit, N-terminal YP_004552742.1 PFAM: Protein of unknown function DUF1260; KEGG: sjp:SJA_C1-14380 hypothetical protein YP_004552744.1 TIGRFAM: Carbamoyl phosphate synthase, large subunit, glutamine-dependent; KEGG: sjp:SJA_C1-14390 carbamoyl-phosphate synthase large chain; PFAM: Carbamoyl phosphate synthetase, large subunit, ATP-binding; Carbamoyl phosphate synthase, large subunit, N-terminal; Carbamoyl phosphate synthetase, large subunit, oligomerisation; MGS-like YP_004552745.1 TIGRFAM: Prokaryotic transcription elongation factor GreA; HAMAP: Transcription elongation factor greA; KEGG: sjp:SJA_C1-14400 transcription elongation factor GreA; PFAM: Transcription elongation factor, GreA/GreB region, prokaryotic YP_004552746.1 PFAM: Peptidase S54, rhomboid; KEGG: sjp:SJA_C1-14410 rhomboid-family protein YP_004552747.1 KEGG: sjp:SJA_C1-14420 hypothetical protein YP_004552748.1 PFAM: Protein of unknown function DUF883, ElaB; KEGG: sjp:SJA_C1-14430 hypothetical protein YP_004552749.1 KEGG: sjp:SJA_C1-14440 hypothetical protein YP_004552750.1 KEGG: sjp:SJA_C1-14450 hypothetical protein YP_004552751.1 KEGG: sjp:SJA_C1-14460 hypothetical protein YP_004552752.1 PFAM: Enolase, C-terminal; Enolase, N-terminal; TIGRFAM: Enolase; HAMAP: Enolase; KEGG: sjp:SJA_C1-14470 enolase YP_004552753.1 PFAM: Septum formation initiator; KEGG: sjp:SJA_C1-14480 septum formation initiator YP_004552754.1 PFAM: Dehydrogenase, E1 component; manually curated; TIGRFAM: Pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit, subgroup y; KEGG: sjp:SJA_C1-14490 pyruvate dehydrogenase E1 component alpha subunit YP_004552755.1 PFAM: Transketolase-like, pyrimidine-binding domain; Biotin/lipoyl attachment; Transketolase, C-terminal; KEGG: sjp:SJA_C1-14500 pyruvate dehydrogenase E1 component beta subunit YP_004552756.1 PFAM: TadE-like; KEGG: eli:ELI_06395 hypothetical protein YP_004552757.1 KEGG: nar:Saro_2498 TadE-like YP_004552758.1 KEGG: sjp:SJA_C1-14530 Flp pilus assembly protein TadG YP_004552759.1 KEGG: sjp:SJA_C1-14540 hypothetical protein YP_004552760.1 KEGG: sjp:SJA_C1-14550 hypothetical protein YP_004552761.1 PFAM: Glucose-inhibited division protein A-related; TIGRFAM: Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase, TrmFO; HAMAP: Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase trmFO; KEGG: sjp:SJA_C1-14560 glucose inhibited division protein Gid YP_004552762.1 PFAM: Sodium:dicarboxylate symporter; KEGG: sjp:SJA_C1-14570 putative Na+/H+-dicarboxylate symporter YP_004552763.1 PFAM: Peptidase M20; Peptidase M20, dimerisation; KEGG: sjp:SJA_C1-14580 putative metalloprotein YP_004552764.1 TIGRFAM: Yeast 2-isopropylmalate synthase; KEGG: sjp:SJA_C1-14590 2-isopropylmalate synthase; PFAM: Pyruvate carboxyltransferase; 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain YP_004552765.1 PFAM: Lipid/polyisoprenoid-binding, YceI-like; KEGG: sjp:SJA_C1-14600 hypothetical protein YceI YP_004552766.1 PFAM: Acetohydroxy acid isomeroreductase, catalytic; Acetohydroxy acid isomeroreductase C-terminal; TIGRFAM: Acetohydroxy acid isomeroreductase; HAMAP: Ketol-acid reductoisomerase; KEGG: sjp:SJA_C1-14610 ketol-acid reductoisomerase YP_004552767.1 KEGG: sjp:SJA_C1-14620 acetolactate synthase small subunit; TIGRFAM: Acetolactate synthase, small subunit; PFAM: Acetolactate synthase, small subunit, C-terminal; Amino acid-binding ACT YP_004552768.1 KEGG: sjp:SJA_C1-14630 hypothetical protein YP_004552769.1 TIGRFAM: Acetolactate synthase, large subunit, biosynthetic; KEGG: sjp:SJA_C1-14640 acetolactate synthase large subunit; PFAM: Thiamine pyrophosphate enzyme, N-terminal TPP binding region; Thiamine pyrophosphate enzyme, central region; Thiamine pyrophosphate enzyme, C-terminal TPP-binding YP_004552770.1 PFAM: tRNA isopentenyltransferase; TIGRFAM: tRNA delta(2)-isopentenylpyrophosphate transferase; KEGG: sjp:SJA_C1-14650 tRNA delta(2)-isopentenylpyrophosphate transferase; HAMAP: tRNA dimethylallyltransferase YP_004552771.1 TIGRFAM: Phosphoserine phosphatase SerB; HAD-superfamily hydrolase, subfamily IB, PSPase-like; KEGG: sjp:SJA_C1-14660 phosphoserine phosphatase; PFAM: Haloacid dehalogenase-like hydrolase YP_004552772.1 SMART: Resolvase, RNase H-like fold; TIGRFAM: Resolvase, holliday junction-type, YqgF-like; KEGG: sjp:SJA_C1-22120 putative Holliday junction resolvase; HAMAP: Holliday junction resolvase; PFAM: Resolvase, holliday junction-type, YqgF-like YP_004552773.1 KEGG: sjp:SJA_C1-22110 hypothetical protein YP_004552774.1 TIGRFAM: Glu-tRNAGln amidotransferase, C subunit; HAMAP: Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C; KEGG: sjp:SJA_C1-22100 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit C; PFAM: Glu-tRNAGln amidotransferase, C subunit YP_004552775.1 TIGRFAM: Glutamyl-tRNA(Gln) amidotransferase A subunit; HAMAP: Glutamyl-tRNA(Gln) amidotransferase A subunit; KEGG: sjp:SJA_C1-22090 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit A; PFAM: Amidase YP_004552776.1 TIGRFAM: Glutamyl-tRNA(Gln) amidotransferase, B subunit; HAMAP: Glutamyl-tRNA(Gln) amidotransferase, B subunit; KEGG: sjp:SJA_C1-22060 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit B; PFAM: Glutamyl-tRNA(Gln) amidotransferase, subunit B/E, N-terminal; Glutamyl-tRNA(Gln) amidotransferase, subunit B/E, central region; Asn/Gln amidotransferase YP_004552777.1 KEGG: swi:Swit_4655 hypothetical protein YP_004552778.1 PFAM: Peptidase M48, Ste24p; KEGG: swi:Swit_4654 peptidase M48, Ste24p YP_004552779.1 KEGG: swi:Swit_4653 hypothetical protein YP_004552780.1 KEGG: sjp:SJA_C1-22030 YapH-family protein; TIGRFAM: Outer membrane autotransporter barrel; PFAM: Autotransporter beta-domain YP_004552781.1 PFAM: Secretin/TonB, short N-terminal; TonB-dependent receptor, plug; KEGG: sjp:SJA_C1-22020 TonB-dependent receptor-like protein YP_004552782.1 PFAM: FecR protein; KEGG: sjp:SJA_C1-22010 Fe2+-dicitrate sensor membrane component YP_004552783.1 KEGG: sjp:SJA_C1-22000 ECF-type sigma factor; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2 YP_004552784.1 PFAM: Beta-lactamase-related; KEGG: sjp:SJA_C1-21980 putative beta-lactamase class C YP_004552785.1 KEGG: sjp:SJA_C1-21970 starch phosphorylase; TIGRFAM: Glycogen/starch/alpha-glucan phosphorylase; PFAM: Glycosyl transferase, family 35 YP_004552786.1 KEGG: sjp:SJA_C1-21960 1,4-alpha-glucan branching enzyme; PFAM: Glycoside hydrolase, family 13, N-terminal; Glycosyl hydrolase, family 13, catalytic region; Alpha-amylase, C-terminal all beta; TIGRFAM: 1,4-alpha-glucan branching enzyme, core region; HAMAP: 1,4-alpha-glucan branching enzyme, core region; SMART: Glycosyl hydrolase, family 13, subfamily, catalytic region YP_004552787.1 PFAM: Nucleotidyl transferase; TIGRFAM: Glucose-1-phosphate adenylyltransferase; HAMAP: Glucose-1-phosphate adenylyltransferase; KEGG: sjp:SJA_C1-21950 glucose-1-phosphate adenylyltransferase YP_004552788.1 PFAM: Starch synthase catalytic region; Glycosyl transferase, group 1; TIGRFAM: Glycogen/starch synthases, ADP-glucose type; HAMAP: Glycogen/starch synthases, ADP-glucose type; KEGG: sjp:SJA_C1-21940 starch synthase YP_004552789.1 SMART: Glycosyl hydrolase, family 13, subfamily, catalytic region; TIGRFAM: Glycogen debranching enzyme GlgX; KEGG: sjp:SJA_C1-21930 glycogen operon protein GlgX; PFAM: Glycoside hydrolase, family 13, N-terminal; Glycosyl hydrolase, family 13, catalytic region YP_004552790.1 KEGG: fri:FraEuI1c_2810 hypothetical protein YP_004552791.1 PFAM: Protein of unknown function DUF35; KEGG: fre:Franean1_0616 hypothetical protein YP_004552792.1 PFAM: Crotonase, core; KEGG: swi:Swit_0344 enoyl-CoA hydratase YP_004552793.1 PFAM: PQQ-dependent enzyme, N-terminal; Pyrrolo-quinoline quinone repeat; PQQ-dependent enzyme, C-terminal; KEGG: sjp:SJA_C2-04000 putative alcohol dehydrogenase; SMART: Pyrrolo-quinoline quinone beta-propeller repeat YP_004552794.1 PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: sjp:SJA_C2-03950 TetR-family transcriptional regulator YP_004552795.1 PFAM: Crotonase, core; KEGG: fri:FraEuI1c_2887 enoyl-CoA hydratase/isomerase YP_004552796.1 PFAM: Flavin reductase-like, FMN-binding; KEGG: mms:mma_2479 hypothetical protein YP_004552797.1 KEGG: bxe:Bxe_C0600 putative acyl-CoA transferase; PFAM: CoA-transferase family III YP_004552798.1 PFAM: Luciferase-like, subgroup; KEGG: fri:FraEuI1c_5437 luciferase-like, subgroup YP_004552799.1 KEGG: swi:Swit_1025 hypothetical protein YP_004552800.1 PFAM: SMP-30/Gluconolaconase/LRE-like region; KEGG: pzu:PHZ_c2847 gluconolactonase YP_004552801.1 PFAM: Protein of unknown function DUF35; KEGG: mav:MAV_1966 hypothetical protein YP_004552802.1 KEGG: reu:Reut_B3512 thiolase YP_004552803.1 KEGG: cse:Cseg_0771 3-hydroxyacyl-CoA dehydrogenase NAD-binding protein; PFAM: 3-hydroxyacyl-CoA dehydrogenase, NAD binding; Crotonase, core; 3-hydroxyacyl-CoA dehydrogenase, C-terminal YP_004552804.1 SMART: Pyrrolo-quinoline quinone beta-propeller repeat; TIGRFAM: PQQ-dependent dehydrogenase, methanol/ethanol family; KEGG: sjp:SJA_C2-04000 putative alcohol dehydrogenase; PFAM: PQQ-dependent enzyme, N-terminal; Pyrrolo-quinoline quinone repeat; PQQ-dependent enzyme, C-terminal; Cytochrome c, class I YP_004552805.1 KEGG: req:REQ_21330 acyl-CoA ligase/synthetase; PFAM: AMP-dependent synthetase/ligase YP_004552806.1 PFAM: Major facilitator superfamily MFS-1; KEGG: pzu:PHZ_c2563 permease of the major facilitator superfamily YP_004552807.1 KEGG: hne:HNE_2795 putative acyl-CoA dehydrogenase; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, central region YP_004552808.1 KEGG: eli:ELI_12315 oxidoreductase; PFAM: Short-chain dehydrogenase/reductase SDR YP_004552809.1 PFAM: Aminoglycoside phosphotransferase; KEGG: pla:Plav_0370 aminoglycoside phosphotransferase YP_004552810.1 PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: hne:HNE_2793 TetR family transcriptional regulator YP_004552811.1 SMART: Elongator protein 3/MiaB/NifB; TIGRFAM: Complex F420, CofH; FO synthase, subunit 1; FO synthase, subunit 2; KEGG: eba:p2A350 FO synthase; HAMAP: FO synthase subunit 1; PFAM: Radical SAM YP_004552812.1 KEGG: eba:p2A348 oxidoreductase, F420-dependent NADP reductase; TIGRFAM: NADPH-dependent F420 reductase; PFAM: NADP oxidoreductase, coenzyme F420-dependent YP_004552813.1 KEGG: cse:Cseg_3584 acetyl-CoA acetyltransferase; TIGRFAM: Thiolase YP_004552814.1 KEGG: sjp:SJA_C1-21920 hypothetical protein YP_004552815.1 KEGG: sjp:SJA_C2-02770 hypothetical protein YP_004552816.1 PFAM: RES; KEGG: nha:Nham_1974 hypothetical protein YP_004552817.1 KEGG: sjp:SJA_C1-21910 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; TIGRFAM: 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK; PFAM: 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK YP_004552818.1 PFAM: Uracil-DNA glycosylase-like; KEGG: sjp:SJA_C1-21900 putative uracil-DNA glycosylase YP_004552819.1 PFAM: Antibiotic biosynthesis monooxygenase; KEGG: sjp:SJA_C1-21890 putative monooxygenase YP_004552820.1 TIGRFAM: N-carbamoylputrescine amidase; KEGG: sjp:SJA_C1-21880 putative amidohydrolase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_004552821.1 KEGG: sjp:SJA_C1-21870 putative peptidylarginine deiminase; PFAM: Peptidyl-arginine deiminase, Porphyromonas-type YP_004552822.1 PFAM: Peptidase M28; KEGG: sjp:SJA_C1-21840 putative aminopeptidase YP_004552823.1 TIGRFAM: Ribosomal protein S4, bacterial-type; PFAM: RNA-binding S4; Ribosomal protein S4; KEGG: sjp:SJA_C1-21830 ribosomal protein S4; SMART: RNA-binding S4 YP_004552824.1 PFAM: Chorismate mutase, type II; KEGG: sjp:SJA_C1-21820 putative chorismate mutase YP_004552825.1 KEGG: sjp:SJA_C1-21810 tRNA/rRNA methyltransferase; PFAM: tRNA/rRNA methyltransferase, SpoU; Excinuclease ABC, C subunit, N-terminal; SMART: Excinuclease ABC, C subunit, N-terminal YP_004552826.1 TIGRFAM: Ribonucleotide reductase regulator NrdR-like; HAMAP: Transcriptional repressor nrdR; KEGG: sjp:SJA_C1-21800 NrdR-family transcriptional regulator; PFAM: ATP-cone YP_004552827.1 KEGG: sjp:SJA_C1-21790 glycine hydroxymethyltransferase; PFAM: Serine hydroxymethyltransferase YP_004552828.1 TIGRFAM: Ribose/galactose isomerase; Ribose 5-phosphate isomerase B; KEGG: sjp:SJA_C1-21780 ribose 5-phosphate isomerase B; PFAM: Ribose/galactose isomerase YP_004552829.1 KEGG: sjp:SJA_C1-21770 hypothetical protein YP_004552830.1 KEGG: mex:Mext_2087 HPP family protein?; PFAM: HPP; Cystathionine beta-synthase, core; SMART: Cystathionine beta-synthase, core YP_004552831.1 PFAM: Alpha/beta hydrolase fold-1; KEGG: sjp:SJA_C1-21760 putative alpha/beta hydrolase YP_004552832.1 KEGG: sjp:SJA_C1-21750 cysteine desulfurase; PFAM: Aminotransferase, class V/Cysteine desulfurase YP_004552833.1 KEGG: sjp:SJA_C1-21740 cysteine desulfurase; PFAM: Aminotransferase, class V/Cysteine desulfurase YP_004552834.1 PFAM: Ferredoxin; KEGG: sjp:SJA_C1-21730 ferredoxin YP_004552835.1 KEGG: sjp:SJA_C1-21720 beta-lactamase class A; PFAM: Beta-lactamase-related YP_004552836.1 TIGRFAM: DNA polymerase III, subunit gamma/ tau; PFAM: ATPase, AAA-type, core; KEGG: sjp:SJA_C1-21710 DNA polymerase III gamma and tau subunit; SMART: ATPase, AAA+ type, core YP_004552837.1 TIGRFAM: Uncharacterised protein family UPF0133; HAMAP: Uncharacterised protein family UPF0133; KEGG: sjp:SJA_C1-21700 hypothetical protein; PFAM: Uncharacterised protein family UPF0133 YP_004552838.1 SMART: Peptidase S16, lon N-terminal; ATPase, AAA+ type, core; TIGRFAM: Peptidase S16, ATP-dependent protease La; KEGG: sjp:SJA_C1-21690 ATP-dependent Lon protease; PFAM: Peptidase S16, lon C-terminal; Peptidase S16, lon N-terminal; ATPase, AAA-type, core YP_004552839.1 KEGG: sjp:SJA_C1-21680 DNA-binding protein HU-beta; PFAM: Histone-like bacterial DNA-binding protein; SMART: Histone-like bacterial DNA-binding protein YP_004552840.1 HAMAP: Phosphoribosyl-AMP cyclohydrolase; KEGG: sjp:SJA_C1-21660 phosphoribosyl-AMP cyclohydrolase; PFAM: Phosphoribosyl-AMP cyclohydrolase YP_004552841.1 KEGG: sjp:SJA_C1-21650 hypothetical protein YP_004552842.1 PFAM: YkuD domain; KEGG: sjp:SJA_C1-21630 hypothetical protein YP_004552843.1 PFAM: Malic enzyme, NAD-binding; Malic enzyme, N-terminal; Phosphate acetyl/butaryl transferase; KEGG: sjp:SJA_C1-21620 malate dehydrogenase YP_004552844.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: sjp:SJA_C1-21610 LysR-family transcriptional regulator YP_004552845.1 TIGRFAM: Malate synthase G; KEGG: sjp:SJA_C1-21600 malate synthase; PFAM: Malate synthase-like, core YP_004552846.1 KEGG: sjp:SJA_C1-21580 alanyl-tRNA synthetase; TIGRFAM: Alanyl-tRNA synthetase, class IIc; PFAM: Alanyl-tRNA synthetase, class IIc, N-terminal; Threonyl/alanyl tRNA synthetase, SAD; Phosphoesterase, DHHA1 YP_004552847.1 PFAM: Glutaminase, core; TIGRFAM: glutaminase A; HAMAP: Glutaminase, core; KEGG: sjp:SJA_C1-21570 glutaminase YP_004552848.1 PFAM: Cation/H+ exchanger; Regulator of K+ conductance, N-terminal; KEGG: sjp:SJA_C1-21560 monovalent cation:H+ antiporter-2 YP_004552849.1 TIGRFAM: Integration host factor, beta subunit; PFAM: Histone-like bacterial DNA-binding protein; KEGG: sjp:SJA_C1-21550 integration host factor beta subunit; SMART: Histone-like bacterial DNA-binding protein YP_004552850.1 KEGG: sjp:SJA_C1-21540 ribosomal protein S1; TIGRFAM: Ribosomal S1 synthesis/modification protein; PFAM: Ribosomal protein S1, RNA binding domain YP_004552851.1 PFAM: Cytidylate kinase region; TIGRFAM: Cytidylate kinase; HAMAP: Cytidylate kinase; KEGG: sjp:SJA_C1-21530 cytidylate kinase YP_004552852.1 KEGG: sjp:SJA_C1-21520 hypothetical protein YP_004552853.1 PFAM: 3-phosphoshikimate 1-carboxyvinyltransferase, core; TIGRFAM: 3-phosphoshikimate 1-carboxyvinyltransferase, subgroup; HAMAP: 3-phosphoshikimate 1-carboxyvinyltransferase, subgroup; KEGG: sjp:SJA_C1-21510 3-phosphoshikimate 1-carboxyvinyltransferase YP_004552854.1 KEGG: sjp:SJA_C1-21490 hypothetical protein; TIGRFAM: Conserved hypothetical protein FYDLN acid; PFAM: Conserved hypothetical protein FYDLN acid YP_004552855.1 PFAM: DNA helicase, UvrD/REP type; KEGG: sjp:SJA_C1-21470 DNA helicase II YP_004552856.1 PFAM: Glutathione-dependent formaldehyde-activating, GFA; KEGG: sjp:SJA_C1-21460 hypothetical protein YP_004552857.1 KEGG: sjp:SJA_C1-21450 hypothetical protein YP_004552858.1 KEGG: gox:GOX0860 CDG1D protein; TIGRFAM: Transcriptional regulator, Rrf2; PFAM: Transcriptional regulator, Rrf2 YP_004552859.1 KEGG: nar:Saro_0148 globin; PFAM: Globin, subset YP_004552860.1 KEGG: sjp:SJA_C1-21440 putative methylase; TIGRFAM: Conserved hypothetical protein CHP00095; PFAM: Protein of unknown function methylase putative YP_004552861.1 TIGRFAM: Pseudouridine synthase, RsuA and RluB/E/F; PFAM: RNA-binding S4; Pseudouridine synthase, RsuA and RluB/C/D/E/F; KEGG: sjp:SJA_C1-21430 ribosomal large subunit pseudouridine synthase B; SMART: RNA-binding S4 YP_004552862.1 KEGG: sjp:SJA_C1-21420 CheY-like response regulator; PFAM: Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region YP_004552863.1 PFAM: Major facilitator superfamily MFS-1; KEGG: sjp:SJA_C1-21410 MFS transporter YP_004552864.1 KEGG: sjp:SJA_C1-21400 hypothetical protein YP_004552865.1 TIGRFAM: Folylpolyglutamate synthetase; KEGG: sjp:SJA_C1-21390 folylpolyglutamate synthase; PFAM: Mur ligase, central YP_004552866.1 TIGRFAM: Acetyl-CoA carboxylase carboxyl transferase, beta subunit; HAMAP: Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta; KEGG: sjp:SJA_C1-21380 acetyl-CoA carboxylase carboxyl transferase subunit beta YP_004552867.1 PFAM: Tryptophan synthase, alpha chain; TIGRFAM: Tryptophan synthase, alpha chain; HAMAP: Tryptophan synthase, alpha chain; KEGG: sjp:SJA_C1-21370 tryptophan synthase alpha chain YP_004552868.1 PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit; TIGRFAM: Tryptophan synthase, beta chain; HAMAP: Tryptophan synthase beta chain; KEGG: sjp:SJA_C1-21360 tryptophan synthase beta chain YP_004552869.1 manually curated; KEGG: sjp:SJA_C1-21350 phosphoribosylanthranilate isomerase; PFAM: N-(5'phosphoribosyl)anthranilate isomerase (PRAI) YP_004552870.1 PFAM: Bacterial lipid A biosynthesis acyltransferase; KEGG: sjp:SJA_C1-21340 lipid A biosynthesis lauroyl acyltransferase YP_004552871.1 KEGG: sjp:SJA_C1-21330 putative ceramide glucosyltransferase YP_004552872.1 PFAM: Protein of unknown function DUF477; KEGG: swi:Swit_1392 hypothetical protein YP_004552873.1 PFAM: Protein of unknown function DUF952; KEGG: sjp:SJA_C1-21320 hypothetical protein YP_004552874.1 SMART: DNA topoisomerase, type IIA, subunit A or C-terminal; TIGRFAM: DNA gyrase, subunit A; KEGG: sjp:SJA_C1-21310 DNA gyrase subunit A; PFAM: DNA topoisomerase, type IIA, subunit A or C-terminal; DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel YP_004552875.1 KEGG: sjp:SJA_C1-21300 hypothetical protein YP_004552876.1 KEGG: sjp:SJA_C1-21290 hypothetical protein YP_004552877.1 KEGG: sjp:SJA_C1-16340 AsnC-family transcriptional regulator; PFAM: Transcription regulator, AsnC-type, C-terminal; SMART: Transcription regulator, AsnC-type YP_004552878.1 KEGG: sjp:SJA_C1-16350 signal transduction histidine kinase; PFAM: Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SMART: Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region YP_004552879.1 KEGG: sjp:SJA_C1-16360 hypothetical protein YP_004552880.1 KEGG: swi:Swit_2111 4-oxalocrotonate decarboxylase; PFAM: Fumarylacetoacetase, C-terminal-like YP_004552881.1 PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: sjp:SJA_C2-03610 TonB-dependent receptor-like protein YP_004552882.1 PFAM: Fumarylacetoacetase, C-terminal-like; KEGG: sjp:SJA_C2-03600 putative FAA hydrolase YP_004552883.1 KEGG: sjp:SJA_C2-03590 2-hydroxy-3-oxopropionate reductase; PFAM: 6-phosphogluconate dehydrogenase, NAD-binding YP_004552884.1 KEGG: sjp:SJA_C2-03580 hydroxypyruvate isomerase; PFAM: Xylose isomerase, TIM barrel domain YP_004552885.1 KEGG: sjp:SJA_C2-03570 putative AMP-dependent acyl-CoA synthetase; PFAM: AMP-dependent synthetase/ligase YP_004552886.1 TIGRFAM: Ketopantoate reductase ApbA/PanE; KEGG: sjp:SJA_C2-03560 2-dehydropantoate 2-reductase; PFAM: Ketopantoate reductase ApbA/PanE, C-terminal; Ketopantoate reductase ApbA/PanE, N-terminal YP_004552887.1 PFAM: Major facilitator superfamily MFS-1; KEGG: sjp:SJA_C2-03550 putative MFS permease YP_004552888.1 KEGG: sjp:SJA_C2-03540 GntR-family transcriptional regulator; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: HTH transcriptional regulator, GntR YP_004552889.1 KEGG: sjp:SJA_C1-16370 ABC-type nitrate/sulfonate/bicarbonate transport system periplasmic component YP_004552890.1 KEGG: sjp:SJA_C1-16380 ABC-type nitrate/sulfonate/bicarbonate transport system permease component; TIGRFAM: Nitrate transport permease; PFAM: Binding-protein-dependent transport systems inner membrane component YP_004552891.1 SMART: ATPase, AAA+ type, core; TIGRFAM: Nitrate transport ATP-binding subunit C/D; KEGG: sjp:SJA_C1-16390 ABC-type nitrate/sulfonate/bicarbonate transport system ATPase component; PFAM: ABC transporter-like YP_004552892.1 KEGG: sjp:SJA_C1-16400 hypothetical protein YP_004552893.1 KEGG: sjp:SJA_C1-16410 hypothetical protein YP_004552894.1 PFAM: Peptidase M28; KEGG: sjp:SJA_C1-16420 putative peptidase M28 YP_004552895.1 SMART: ATPase, AAA+ type, core; TIGRFAM: ATP-binding cassette protein, ChvD family; KEGG: sjp:SJA_C1-16430 putative ABC-type transporter ATPase component; PFAM: ABC transporter-like YP_004552896.1 KEGG: sjp:SJA_C1-16820 acylphosphatase; HAMAP: Acylphosphatase; PFAM: Acylphosphatase-like YP_004552897.1 PFAM: Protein of unknown function DUF88; KEGG: sjp:SJA_C1-16810 hypothetical protein YP_004552898.1 manually curated; KEGG: sjp:SJA_C1-16800 carbonic anhydrase; PFAM: Carbonic anhydrase YP_004552899.1 KEGG: sjp:SJA_C1-16790 lipoic acid synthetase; PFAM: Radical SAM; TIGRFAM: Lipoate synthase; HAMAP: Lipoate synthase; SMART: Elongator protein 3/MiaB/NifB YP_004552900.1 PFAM: Streptomyces cyclase/dehydrase; KEGG: sjp:SJA_C1-16780 putative oligoketide cyclase YP_004552901.1 KEGG: sjp:SJA_C1-16770 competence/damage-inducible protein CinA C-terminal domain; TIGRFAM: CinA, C-terminal; PFAM: CinA, C-terminal YP_004552902.1 TIGRFAM: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, core; 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; HAMAP: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, core; KEGG: sjp:SJA_C1-16760 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; PFAM: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, core; 4-diphosphocytidyl-2C-methyl-D-erythritol synthase YP_004552903.1 KEGG: sjp:SJA_C1-16750 tRNA-dihydrouridine synthase; TIGRFAM: tRNA-dihydrouridine synthase, TIM-barrel, NifR3; PFAM: tRNA-dihydrouridine synthase YP_004552904.1 KEGG: sjp:SJA_C1-16740 two-component system histidine kinase GlnL/NtrB; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region YP_004552905.1 TIGRFAM: Signal transduction response regulator, nitrogen regulation NR(I); PFAM: RNA polymerase sigma factor 54, interaction; Signal transduction response regulator, receiver region; Helix-turn-helix, Fis-type; KEGG: sjp:SJA_C1-16730 two-component system response regulator GnG/NtrC; SMART: Signal transduction response regulator, receiver region; ATPase, AAA+ type, core YP_004552906.1 KEGG: sjp:SJA_C1-16720 putative signal transduction histidine kinase; PFAM: ATP-binding region, ATPase-like; HAMP linker domain; PAS fold; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SMART: ATP-binding region, ATPase-like; HAMP linker domain; PAS; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region YP_004552907.1 KEGG: sjp:SJA_C1-16710 two-component system response regulator; PFAM: RNA polymerase sigma factor 54, interaction; Signal transduction response regulator, receiver region; Helix-turn-helix, Fis-type; SMART: Signal transduction response regulator, receiver region; ATPase, AAA+ type, core YP_004552908.1 TIGRFAM: Host factor Hfq; HAMAP: Protein hfq; KEGG: sjp:SJA_C1-16700 host factor-I protein; PFAM: Like-Sm ribonucleoprotein, core YP_004552909.1 KEGG: sjp:SJA_C1-16690 GTP-binding protein HflX; TIGRFAM: GTP-binding protein, HflX; PFAM: GTP-binding protein, HSR1-related YP_004552910.1 KEGG: sjp:SJA_C1-16680 nucleoside triphosphate pyrophosphohydrolase; TIGRFAM: NTP pyrophosphohydrolase MazG, bacterial; PFAM: NTP pyrophosphohydrolase MazG, putative catalytic core YP_004552911.1 PFAM: Integrase, catalytic core; KEGG: sjp:SJA_C1-04450 putative transposase YP_004552912.1 PFAM: General substrate transporter; KEGG: sjp:SJA_C1-16660 MFS transporter YP_004552913.1 KEGG: sjp:SJA_C1-16650 putative aspartyl protease YP_004552914.1 KEGG: sjp:SJA_C1-16640 PhnP protein YP_004552915.1 KEGG: sjp:SJA_C1-16630 Mg-dependent DNase; TIGRFAM: Deoxyribonuclease, TatD Mg-dependent, prokaryote; PFAM: Deoxyribonuclease, TatD-related YP_004552916.1 PFAM: Aminoacyl-tRNA synthetase, class I (M); TIGRFAM: Methionyl-tRNA synthetase, class Ia; HAMAP: Methionyl-tRNA synthetase; KEGG: sjp:SJA_C1-16620 methionyl-tRNA synthetase YP_004552917.1 KEGG: sjp:SJA_C1-16610 DNA polymerase III delta' subunit YP_004552918.1 PFAM: Thymidylate kinase-like; TIGRFAM: Thymidylate kinase; HAMAP: Thymidylate kinase; KEGG: sjp:SJA_C1-16600 dTMP kinase YP_004552919.1 KEGG: sjp:SJA_C1-16590 D-alanyl-D-alanine carboxypeptidase; PFAM: Peptidase S11, D-alanyl-D-alanine carboxypeptidase A; Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal YP_004552920.1 TIGRFAM: Lytic murein transglycosylase; KEGG: sjp:SJA_C1-16580 membrane-bound lytic murein transglycosylase B YP_004552921.1 PFAM: Tetratricopeptide TPR-1; KEGG: dsy:DSY3421 hypothetical protein YP_004552922.1 KEGG: sjp:SJA_C1-16570 hypothetical protein YP_004552923.1 PFAM: Protein of unknown function DUF983; KEGG: sjp:SJA_C1-16560 hypothetical protein YP_004552924.1 TIGRFAM: SecA protein; HAMAP: Protein translocase subunit secA; KEGG: sjp:SJA_C1-16550 preprotein translocase SecA subunit; PFAM: SecA DEAD-like; SecA preprotein cross-linking region; SecA Wing/Scaffold; SEC-C motif YP_004552925.1 PFAM: Arginine biosynthesis protein ArgJ; TIGRFAM: Arginine biosynthesis protein ArgJ; HAMAP: Arginine biosynthesis protein ArgJ; KEGG: sjp:SJA_C1-16540 amino-acid N-acetyltransferase YP_004552926.1 PFAM: Inositol monophosphatase; KEGG: sjp:SJA_C1-16530 putative inositol monophosphatase YP_004552927.1 KEGG: sjp:SJA_C1-16510 thioredoxin 1; TIGRFAM: Thioredoxin; PFAM: Thioredoxin domain YP_004552928.1 KEGG: sjp:SJA_C1-16500 putative UvrD/Rep helicase; TIGRFAM: DNA helicase (double-strand break repair), AddA type; PFAM: DNA helicase, UvrD/REP type YP_004552929.1 TIGRFAM: Double-strand break repair protein AddB; KEGG: sjp:SJA_C1-16490 putative helicase YP_004552930.1 PFAM: Nucleotidyl transferase; KEGG: sjp:SJA_C1-16480 mannose-1-phosphate guanylyltransferase YP_004552931.1 PFAM: Aminoglycoside phosphotransferase; KEGG: sjp:SJA_C1-16470 putative phosphotransferase YP_004552932.1 manually curated; TIGRFAM: Uncharacterised protein family UPF0079, ATPase bacteria; KEGG: sjp:SJA_C1-16460 putative ATPase; PFAM: Uncharacterised protein family UPF0079, ATPase bacteria YP_004552933.1 KEGG: sjp:SJA_C1-16450 putative sensor histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; PAS fold-4; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; PAS YP_004552934.1 PFAM: S-adenosyl-L-homocysteine hydrolase; S-adenosyl-L-homocysteine hydrolase, NAD binding; TIGRFAM: S-adenosyl-L-homocysteine hydrolase; HAMAP: Adenosylhomocysteinase; KEGG: sjp:SJA_C1-16830 adenosylhomocysteinase YP_004552935.1 KEGG: sjp:SJA_C1-16840 hypothetical protein YP_004552936.1 KEGG: sjp:SJA_C1-16850 putative transcriptional regulator; HAMAP: Protein of unknown function DUF179; PFAM: Protein of unknown function DUF179 YP_004552937.1 PFAM: Redoxin; KEGG: sjp:SJA_C1-16860 peroxiredoxin YP_004552938.1 TIGRFAM: AMP nucleosidase; KEGG: sjp:SJA_C1-16870 AMP nucleosidase; PFAM: AMP nucleoside phosphorylase, N-terminal; Nucleoside phosphorylase YP_004552939.1 PFAM: Alpha/beta hydrolase fold-1; KEGG: sjp:SJA_C1-16880 putative alpha/beta hydrolase YP_004552940.1 PFAM: Uncharacterised conserved protein UCP020606; KEGG: sjp:SJA_C1-16890 putative membrane protein YjdF YP_004552941.1 TIGRFAM: Aspartate-semialdehyde dehydrogenase, bacterial; KEGG: sjp:SJA_C1-16900 aspartate-semialdehyde dehydrogenase; PFAM: Semialdehyde dehydrogenase, dimerisation region; Semialdehyde dehydrogenase, NAD-binding YP_004552942.1 KEGG: sjp:SJA_C1-16910 dipeptidyl-peptidase 4; PFAM: Peptidase S9B, dipeptidylpeptidase IV N-terminal; Peptidase S9, prolyl oligopeptidase, catalytic domain YP_004552943.1 PFAM: Integrase, catalytic core, phage; KEGG: aba:Acid345_2069 phage integrase YP_004552945.1 KEGG: gbm:Gbem_3006 hypothetical protein YP_004552948.1 PFAM: Nucleotide-binding protein, predicted, TIR-like; KEGG: etr:ETAE_1395 predicted nucleotide-binding protein containing TIR -like domain YP_004552949.1 KEGG: met:M446_4951 hypothetical protein YP_004552950.1 PFAM: Entericidin EcnAB YP_004552951.1 KEGG: sjp:SJA_C1-16920 hypothetical protein YP_004552952.1 TIGRFAM: ATP-dependent protease HslVU, peptidase subunit; HAMAP: ATP-dependent protease hslV; KEGG: sjp:SJA_C1-16930 ATP-dependent HslUV protease peptidase subunit HslV; PFAM: Proteasome, subunit alpha/beta YP_004552953.1 TIGRFAM: Heat shock protein HslU; PFAM: ATPase associated with various cellular activities, AAA-2; KEGG: sjp:SJA_C1-16940 ATP-dependent HslUV protease ATP-binding subunit HslU; SMART: ATPase, AAA+ type, core YP_004552954.1 HAMAP: Prolyl-tRNA synthetase, class IIa, prokaryotic-type; KEGG: sjp:SJA_C1-16950 prolyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved region; Anticodon-binding; Prolyl-tRNA synthetase, class II, C-terminal YP_004552955.1 KEGG: sjp:SJA_C1-16960 polyhydroxyalkanoate synthesis repressor PhaR; TIGRFAM: Polyhydroxyalkanoate synthesis repressor PhaR; PFAM: PHA accumulation regulator DNA-binding, N-terminal; PHB accumulation regulatory YP_004552956.1 KEGG: sjp:SJA_C1-16970 polyhydroxyalkanoate synthase YP_004552957.1 KEGG: sjp:SJA_C1-16980 acetyl-CoA C-acetyltransferase; TIGRFAM: Thiolase YP_004552958.1 PFAM: Alanine racemase, C-terminal; Alanine racemase, N-terminal; TIGRFAM: Alanine racemase; HAMAP: Alanine racemase; KEGG: sjp:SJA_C1-16990 alanine racemase YP_004552959.1 PFAM: General substrate transporter; KEGG: sjp:SJA_C1-17000 MFS transporter YP_004552960.1 KEGG: sjp:SJA_C1-17010 secretion chaperone CsaA; TIGRFAM: Secretion chaperone CsaA; PFAM: tRNA-binding region YP_004552961.1 KEGG: sjp:SJA_C1-17020 propionyl-CoA carboxylase alpha chain; PFAM: Carbamoyl phosphate synthetase, large subunit, ATP-binding; Carbamoyl phosphate synthase, large subunit, N-terminal; Biotin carboxylase, C-terminal; Biotin/lipoyl attachment YP_004552962.1 KEGG: sjp:SJA_C1-17030 biotin synthetase; PFAM: Biotin/thiamin synthesis-associated protein; Radical SAM; TIGRFAM: Biotin synthase; HAMAP: Biotin synthase; SMART: Elongator protein 3/MiaB/NifB YP_004552963.1 TIGRFAM: Methylmalonyl-CoA mutase, alpha chain, catalytic; Methylmalonyl-CoA mutase, C-terminal; KEGG: sjp:SJA_C1-17040 methylmalonyl-CoA mutase N-terminal domain; PFAM: Methylmalonyl-CoA mutase, alpha/beta chain, catalytic; Cobalamin (vitamin B12)-binding YP_004552964.1 TIGRFAM: Methylmalonyl-CoA epimerase; KEGG: sjp:SJA_C1-17050 lactoylglutathione lyase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase YP_004552965.1 KEGG: sjp:SJA_C1-17060 propionyl-CoA carboxylase beta chain; PFAM: Carboxyl transferase YP_004552966.1 KEGG: sjp:SJA_C1-17070 Xre-family transcriptional regulator; PFAM: Protein of unknown function DUF2083,transcriptional regulator; Protein of unknown function DUF955; Helix-turn-helix type 3; SMART: Helix-turn-helix type 3 YP_004552967.1 PFAM: Protein of unknown function DUF2257; KEGG: sjp:SJA_C1-17080 hypothetical protein YP_004552968.1 KEGG: sjp:SJA_C1-17090 glutathione reductase (NADPH); PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation YP_004552969.1 KEGG: sjp:SJA_C1-17100 glucose-6-phosphate isomerase; HAMAP: Phosphoglucose isomerase (PGI); PFAM: Phosphoglucose isomerase (PGI) YP_004552970.1 TIGRFAM: Peptidase S26A, signal peptidase I; KEGG: sjp:SJA_C1-17120 signal peptidase I; PFAM: Peptidase S24/S26A/S26B, conserved region YP_004552971.1 KEGG: sjp:SJA_C1-17130 ribonuclease III; PFAM: Ribonuclease III; Double-stranded RNA binding; TIGRFAM: Ribonuclease III, bacterial; HAMAP: Ribonuclease III, bacterial; SMART: Ribonuclease III; Double-stranded RNA binding YP_004552972.1 TIGRFAM: GTP-binding protein Era; Small GTP-binding protein; HAMAP: GTP-binding protein Era; KEGG: sjp:SJA_C1-17150 GTP-binding protein Era; PFAM: GTP-binding protein, HSR1-related; K Homology, type 2 YP_004552973.1 SMART: DNA topoisomerase, type IA, DNA-binding; DNA topoisomerase, type IA, domain 2; Toprim domain, subgroup; TIGRFAM: DNA topoisomerase I, bacterial-type; KEGG: sjp:SJA_C1-17160 DNA topoisomerase I; PFAM: DNA topoisomerase, type IA, central; Toprim domain; DNA topoisomerase, type IA, zn finger YP_004552974.1 KEGG: sjp:SJA_C1-17170 DNA processing protein; TIGRFAM: DNA recombination-mediator protein A; PFAM: DNA recombination-mediator protein A YP_004552975.1 TIGRFAM: Membrane protein YgiH; HAMAP: Protein of unknown function DUF205; KEGG: sjp:SJA_C1-17180 putative membrane protein YgiH; PFAM: Protein of unknown function DUF205 YP_004552976.1 PFAM: Asp/Glu/hydantoin racemase; TIGRFAM: Glutamate racemase; HAMAP: Glutamate racemase; KEGG: sjp:SJA_C1-17190 glutamate racemase YP_004552977.1 TIGRFAM: Tetrapyrrole biosynthesis, 5-aminolevulinic acid synthase; KEGG: sjp:SJA_C1-17200 5-aminolevulinate synthase; PFAM: Aminotransferase, class I/II YP_004552978.1 KEGG: sjp:SJA_C1-17210 putative exonuclease YP_004552979.1 PFAM: ATP dependent DNA ligase, central; ATP dependent DNA ligase, C-terminal; KEGG: sjp:SJA_C1-17220 ATP-dependent DNA ligase YP_004552980.1 PFAM: Saccharopine dehydrogenase; KEGG: sjp:SJA_C1-17240 putative saccharopine dehydrogenase YP_004552981.1 PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: sjp:SJA_C1-17250 putative diaminopimelate decarboxylase YP_004552982.1 KEGG: sjp:SJA_C1-17260 ornithine decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2 YP_004552983.1 PFAM: (Uracil-5)-methyltransferase; KEGG: sjp:SJA_C1-17270 TrmA family RNA methyltransferase YP_004552984.1 KEGG: sjp:SJA_C1-17280 putative sugar kinase; TIGRFAM: Uncharacterised protein family, carbohydrate kinase-related; YjeF-related protein, N-terminal; PFAM: YjeF-related protein, N-terminal; Uncharacterised protein family, carbohydrate kinase-related YP_004552985.1 KEGG: sjp:SJA_C1-17290 hypothetical protein YP_004552986.1 PFAM: N-formylglutamate amidohydrolase; KEGG: sjp:SJA_C1-17300 putative N-formylglutamate amidohydrolase YP_004552987.1 PFAM: GHMP kinase; GHMP kinase, C-terminal; TIGRFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; HAMAP: 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; KEGG: sjp:SJA_C1-17310 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase YP_004552988.1 KEGG: sjp:SJA_C1-17320 TPR repeat protein YP_004552989.1 KEGG: sjp:SJA_C1-17330 electron-transferring-flavoprotein dehydrogenase; PFAM: Electron transfer flavoprotein-ubiquinone oxidoreductase; FAD dependent oxidoreductase YP_004552990.1 KEGG: sjp:SJA_C1-17340 uracil-DNA glycosylase superfamily YP_004552991.1 PFAM: Lytic transglycosylase-like, catalytic; KEGG: sjp:SJA_C1-17350 putative lytic transglycosylase YP_004552992.1 KEGG: sjp:SJA_C1-17360 molybdenum cofactor biosynthesis protein B; TIGRFAM: Molybdenum cofactor biosynthesis protein B, proteobacteria; Molybdenum cofactor synthesis; PFAM: Molybdopterin binding YP_004552993.1 manually curated; PFAM: Radical SAM; KEGG: sjp:SJA_C1-17380 radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB YP_004552994.1 KEGG: sjp:SJA_C1-17390 DNA polymerase III alpha subunit; PFAM: Bacterial DNA polymerase III, alpha subunit; PHP, C-terminal; Nucleic acid binding, OB-fold, tRNA/helicase-type; manually curated; TIGRFAM: DNA polymerase III, alpha subunit; SMART: Polymerase/histidinol phosphatase, N-terminal YP_004552995.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate cyclase, predicted; HAMP linker domain; KEGG: sjp:SJA_C1-17400 GGDEF-family protein; SMART: Diguanylate cyclase, predicted; HAMP linker domain YP_004552996.1 PFAM: ABC transporter-like; KEGG: sjp:SJA_C1-17410 ABC-type transport system ATPase component; SMART: ATPase, AAA+ type, core YP_004552997.1 KEGG: sjp:SJA_C1-17420 ABC-type transport system permease component; TIGRFAM: Lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: Protein of unknown function DUF214, permase predicted YP_004552998.1 PFAM: Heat shock protein Hsp20; KEGG: sjp:SJA_C1-17440 molecular chaperone IbpA YP_004552999.1 KEGG: sjp:SJA_C1-17450 KUP system potassium uptake protein; HAMAP: Low affinity potassium transport system protein kup; PFAM: K+ potassium transporter YP_004553000.1 KEGG: sjp:SJA_C1-17460 cytochrome c biogenesis factor YP_004553001.1 PFAM: Cytochrome C biogenesis protein CcmH; KEGG: sjp:SJA_C1-17470 cytochrome c-type biogenesis protein CcmH YP_004553002.1 PFAM: Redoxin; KEGG: sjp:SJA_C1-17480 cytochrome c biogenesis protein CcmG YP_004553003.1 KEGG: sjp:SJA_C1-17490 cytochrome c-type biogenesis protein CcmF; TIGRFAM: Cytochrome c-type biogenesis protein CcmF; PFAM: Cytochrome c assembly protein YP_004553004.1 KEGG: sjp:SJA_C1-17500 cytochrome c-type biogenesis protein CcmE; HAMAP: CcmE/CycJ protein; PFAM: CcmE/CycJ protein YP_004553005.1 KEGG: sjp:SJA_C1-17510 hypothetical protein YP_004553006.1 KEGG: sjp:SJA_C1-17520 heme exporter membrane protein CcmC; TIGRFAM: Cytochrome c-type biogenesis protein CcmC; PFAM: Cytochrome c assembly protein YP_004553007.1 TIGRFAM: Amidophosphoribosyl transferase; KEGG: sjp:SJA_C1-17540 amidophosphoribosyltransferase; PFAM: Glutamine amidotransferase, class-II; Phosphoribosyltransferase YP_004553008.1 PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: sjp:SJA_C1-17550 SDR-family protein YP_004553009.1 KEGG: sjp:SJA_C1-17560 cyclopropane-fatty-acyl-phospholipid synthase; PFAM: Cyclopropane-fatty-acyl-phospholipid synthase YP_004553010.1 PFAM: DNA photolyase, FAD-binding/Cryptochrome, C-terminal; DNA photolyase, N-terminal; KEGG: sjp:SJA_C1-17570 deoxyribodipyrimidine photo-lyase YP_004553011.1 KEGG: sjp:SJA_C1-17580 putative (di)nucleoside polyphosphate hydrolase; HAMAP: RNA pyrophosphohydrolase; PFAM: NUDIX hydrolase domain YP_004553012.1 PFAM: Protein of unknown function DUF481; KEGG: sjp:SJA_C1-17590 putative salt-induced outer membrane protein YP_004553013.1 PFAM: Peptidase M20, dimerisation; Peptidase M20; KEGG: sjp:SJA_C1-17600 glutamate carboxypeptidase YP_004553014.1 TIGRFAM: Arginine N-succinyltransferase Ast/AOST; KEGG: sjp:SJA_C1-17610 arginine N-succinyltransferase; PFAM: Arginine N-succinyltransferase Ast/AOST YP_004553015.1 HAMAP: N-succinylarginine dihydrolase; KEGG: sjp:SJA_C1-17620 succinylarginine dihydrolase; PFAM: Succinylarginine dihydrolase YP_004553016.1 KEGG: sjp:SJA_C1-17630 hypothetical protein YP_004553017.1 TIGRFAM: Cobyric acid synthase CobQ; HAMAP: Cobyric acid synthase CobQ; KEGG: sjp:SJA_C1-17640 adenosylcobyric acid synthase; PFAM: CobB/CobQ-like glutamine amidotransferase; Cobyrinic acid a,c-diamide synthase YP_004553018.1 SMART: ATPase, AAA+ type, core; TIGRFAM: ATPase, type I secretion system, PrtD; KEGG: sjp:SJA_C1-17650 ATP-binding cassette protein; PFAM: ABC transporter-like YP_004553019.1 KEGG: sjp:SJA_C1-17660 HlyD-family secretion protein; TIGRFAM: Type I secretion membrane fusion protein, HlyD; PFAM: Secretion protein HlyD YP_004553020.1 PFAM: Glycosyl transferase, group 1; KEGG: sjp:SJA_C1-17670 putative glycosyltransferase YP_004553021.1 KEGG: sjp:SJA_C1-17680 hypothetical protein YP_004553022.1 KEGG: sjp:SJA_C1-17690 hypothetical protein YP_004553023.1 KEGG: sjp:SJA_C1-17700 hypothetical protein YP_004553024.1 KEGG: sjp:SJA_C1-17710 hypothetical protein YP_004553025.1 PFAM: TM1410 hypothetical-related protein; KEGG: sjp:SJA_C1-17720 hypothetical protein YP_004553026.1 KEGG: sjp:SJA_C1-17730 hypothetical protein YP_004553027.1 KEGG: sjp:SJA_C1-17740 putative cadherin; PFAM: Cadherin; Peptidase M10, serralysin, C-terminal; Haemolysin-type calcium-binding region; SMART: Cadherin YP_004553028.1 PFAM: TM1410 hypothetical-related protein; KEGG: sjp:SJA_C1-17750 putative endo alpha-1,4 polygalactosaminidase YP_004553029.1 KEGG: sjp:SJA_C1-17760 hypothetical protein YP_004553030.1 TIGRFAM: Pyruvate, phosphate dikinase; KEGG: sjp:SJA_C1-17770 pyruvate/orthophosphate dikinase; PFAM: Pyruvate phosphate dikinase, PEP/pyruvate-binding; PEP-utilising enzyme, mobile region; PEP-utilising enzyme YP_004553031.1 TIGRFAM: Glycyl-tRNA synthetase, class IIc, beta subunit; HAMAP: Glycyl-tRNA synthetase beta subunit; KEGG: sjp:SJA_C1-17780 glycyl-tRNA synthetase beta chain YP_004553032.1 PFAM: Glycyl-tRNA synthetase, class IIc, alpha subunit; TIGRFAM: Glycyl-tRNA synthetase, class IIc, alpha subunit; HAMAP: Glycyl-tRNA synthetase, class IIc, alpha subunit; KEGG: sjp:SJA_C1-17790 glycyl-tRNA synthetase alpha chain YP_004553033.1 PFAM: GumN; KEGG: sjp:SJA_C1-17800 GumN-family protein YP_004553034.1 PFAM: GumN; KEGG: sjp:SJA_C1-17810 GumN-family protein YP_004553035.1 TIGRFAM: Ribosomal protein L25; HAMAP: Ribosomal protein L25; KEGG: sjp:SJA_C1-17820 ribosomal protein L25; PFAM: Ribosomal protein L25, N-terminal YP_004553036.1 PFAM: Peptidyl-tRNA hydrolase; TIGRFAM: Peptidyl-tRNA hydrolase; HAMAP: Peptidyl-tRNA hydrolase; KEGG: sjp:SJA_C1-17830 peptidyl-tRNA hydrolase YP_004553037.1 PFAM: Protein of unknown function DUF2490; KEGG: sjp:SJA_C1-17860 hypothetical protein YP_004553038.1 KEGG: sjp:SJA_C1-17870 putative GTPase; TIGRFAM: Conserved hypothetical protein CHP00092; PFAM: Protein of unknown function DUF933; GTP-binding protein, HSR1-related YP_004553039.1 KEGG: sjp:SJA_C1-17880 putative G:T/U mismatch-specific DNA glycosylase YP_004553040.1 KEGG: sjp:SJA_C1-17890 nucleotide pyrophosphatase family protein; PFAM: Type I phosphodiesterase/nucleotide pyrophosphatase/phosphate transferase YP_004553041.1 PFAM: MaoC-like dehydratase; KEGG: sjp:SJA_C1-17900 MaoC-like dehydratase YP_004553042.1 KEGG: sjp:SJA_C1-17910 hypothetical protein YP_004553043.1 TIGRFAM: DNA mismatch repair protein, N-terminal; HAMAP: DNA mismatch repair protein mutL; KEGG: sjp:SJA_C1-17920 DNA mismatch repair protein MutL; PFAM: MutL, C-terminal, dimerisation; DNA mismatch repair protein, C-terminal; ATP-binding region, ATPase-like YP_004553044.1 KEGG: sjp:SJA_C1-17930 rod shape-determining protein MreB; TIGRFAM: Cell shape determining protein MreB/Mrl; PFAM: Cell shape determining protein MreB/Mrl YP_004553045.1 KEGG: sjp:SJA_C1-17940 rod shape-determining protein MreC; TIGRFAM: Rod shape-determining protein MreC, subtype; PFAM: Rod shape-determining protein MreC YP_004553046.1 KEGG: sjp:SJA_C1-17950 hypothetical protein YP_004553047.1 TIGRFAM: Penicillin-binding protein 2; KEGG: sjp:SJA_C1-17960 penicillin binding protein 2; PFAM: Penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain YP_004553048.1 KEGG: sjp:SJA_C1-17970 rod shape determining protein; TIGRFAM: Rod shape-determining protein RodA; PFAM: Cell cycle protein YP_004553049.1 PFAM: Prophage CP4-57 regulatory YP_004553050.1 PFAM: Transcriptional regulator, YbiH, C-terminal; Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: bbr:BB2384 TetR family transcriptional regulator YP_004553051.1 PFAM: Secretion protein HlyD; KEGG: bbr:BB2383 HlyD family secretion protein YP_004553052.1 PFAM: ABC transporter-like; KEGG: vap:Vapar_1740 ABC transporter related; SMART: ATPase, AAA+ type, core YP_004553053.1 PFAM: ABC-2 type transporter; KEGG: bpa:BPP1316 hypothetical protein YP_004553054.1 PFAM: ABC-2 type transporter; KEGG: ABC-2 type transporter YP_004553055.1 KEGG: bbr:BB2379 outer membrane efflux protein; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT; PFAM: Outer membrane efflux protein YP_004553056.1 PFAM: MobA/MobL protein; KEGG: sjp:SJA_C1-31820 conjugal transfer protein TraA YP_004553057.1 SMART: Helix-turn-helix type 3; KEGG: sjp:SJA_P1-00980 Xre-family transcriptional regulator YP_004553059.1 PFAM: Disulphide bond isomerase, DsbC/G, N-terminal; KEGG: sjp:SJA_P1-01010 putative protein-disulfide isomerase YP_004553060.1 KEGG: sjp:SJA_P1-01020 hypothetical protein YP_004553061.1 KEGG: sjp:SJA_P1-01030 hypothetical protein YP_004553062.1 KEGG: sjp:SJA_P1-01040 putative sex pilus assembly and synthesis protein YP_004553063.1 KEGG: sjp:SJA_P1-01050 hypothetical protein YP_004553064.1 KEGG: sjp:SJA_P1-01060 conjugal transfer protein TraB YP_004553065.1 PFAM: Type IV secretion system, TraV; KEGG: sjp:SJA_P1-01070 hypothetical protein YP_004553066.1 KEGG: sjp:SJA_P1-01080 type IV secretory pathway VirB4 component YP_004553067.1 KEGG: sjp:SJA_P1-01090 hypothetical protein YP_004553070.1 KEGG: sjp:SJA_P1-01100 hypothetical protein YP_004553071.1 KEGG: sjp:SJA_P1-01110 plasmid transfer protein TraW YP_004553072.1 PFAM: TraU; KEGG: sjp:SJA_P1-01120 conjugal DNA transfer protein TraU YP_004553073.1 KEGG: sjp:SJA_P1-01140 hypothetical protein YP_004553074.1 KEGG: sjp:SJA_P1-01150 mating pair stabilization protein TraN YP_004553075.1 PFAM: Type-F conjugative transfer system pilin assembly protein TrbC; KEGG: sjp:SJA_P1-01160 hypothetical protein YP_004553076.1 KEGG: sjp:SJA_P1-01170 type IV secretory pathway protease TraF-like protein YP_004553077.1 KEGG: sjp:SJA_P1-01180 thioredoxin-related protein YP_004553078.1 KEGG: sjp:SJA_P1-01210 hypothetical protein YP_004553079.1 PFAM: Type IV conjugative transfer system protein TraH; KEGG: sjp:SJA_P1-01220 sex pilus assembly protein TraH YP_004553080.1 KEGG: sjp:SJA_P1-01230 DNA transfer and F pilus assembly protein TraG YP_004553081.1 KEGG: sjp:SJA_P1-01240 hypothetical protein YP_004553082.1 KEGG: swi:Swit_5395 hypothetical protein YP_004553083.1 PFAM: Protein of unknown function DUF1814; KEGG: xau:Xaut_0439 hypothetical protein YP_004553084.1 KEGG: xau:Xaut_0438 hypothetical protein YP_004553085.1 KEGG: sjp:SJA_C1-04720 LuxR-family transcriptional regulator; PFAM: Autoinducer-binding; Transcription regulator LuxR, C-terminal; SMART: Transcription regulator LuxR, C-terminal YP_004553086.1 KEGG: pzu:PHZ_p0136 alcohol dehydrogenase, zinc-binding; PFAM: Alcohol dehydrogenase GroES-like; Alcohol dehydrogenase, zinc-binding YP_004553087.1 PFAM: UspA; KEGG: rde:RD1_1269 universal stress family protein, putative YP_004553088.1 KEGG: nar:Saro_3463 alcohol dehydrogenase; TIGRFAM: Alcohol dehydrogenase, zinc-binding type 2; PFAM: Alcohol dehydrogenase GroES-like; Alcohol dehydrogenase, zinc-binding YP_004553089.1 PFAM: Globin, truncated bacterial-like; KEGG: swi:Swit_1200 globin YP_004553090.1 KEGG: cak:Caul_2460 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region YP_004553091.1 KEGG: cak:Caul_2968 two component LuxR family transcriptional regulator; PFAM: Signal transduction response regulator, receiver region; Transcription regulator LuxR, C-terminal; SMART: Signal transduction response regulator, receiver region; Transcription regulator LuxR, C-terminal YP_004553092.1 TIGRFAM: PAS; PFAM: ATP-binding region, ATPase-like; PAS fold; PAS fold-4; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; KEGG: cak:Caul_2969 multi-sensor signal transduction histidine kinase; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; PAS YP_004553093.1 PFAM: Heat shock protein Hsp20; KEGG: bja:blr7961 HspC2 heat shock protein YP_004553094.1 KEGG: azl:AZL_e03160 hypothetical protein; manually curated; PFAM: Aminoglycoside phosphotransferase YP_004553095.1 KEGG: nar:Saro_0382 TraR/DksA family transcriptional regulator YP_004553096.1 KEGG: noc:Noc_2233 hypothetical protein YP_004553097.1 PFAM: Putative carbohydrate binding; Glycosyltransferase 36; Glycosyltransferase 36 associated; KEGG: dar:Daro_2046 putative carbohydrate binding:glycosyltransferase 36:glycosyltransferase 36 associated YP_004553098.1 PFAM: UspA; KEGG: tro:trd_1809 universal stress protein YP_004553099.1 TIGRFAM: Phosphoenolpyruvate synthase; KEGG: art:Arth_0339 phosphoenolpyruvate synthase; PFAM: Pyruvate phosphate dikinase, PEP/pyruvate-binding; PEP-utilising enzyme, mobile region; PEP-utilising enzyme YP_004553100.1 PFAM: Lytic transglycosylase-like, catalytic; KEGG: sjp:SJA_C1-18000 TrbN/BfpH-like protein YP_004553101.1 PFAM: Restriction endonuclease, type IV-like, Mrr; KEGG: sjp:SJA_C1-18010 putative restriction endonuclease YP_004553102.1 KEGG: sjp:SJA_C1-18020 TraI/TrwC-like protein; TIGRFAM: Conjugative relaxase region, N-terminal; PFAM: TrwC relaxase YP_004553103.1 PFAM: Type IV secretion-system, TraD, DNA-binding domain; TRAG protein; KEGG: sjp:SJA_C1-18030 VirD4/TraD-like protein YP_004553104.1 PFAM: CopG-like DNA-binding; KEGG: sjp:SJA_C1-18040 hypothetical protein YP_004553105.1 KEGG: sjp:SJA_C1-18110 hypothetical protein YP_004553106.1 PFAM: Protein of unknown function DUF2493; KEGG: sjp:SJA_C1-18120 hypothetical protein YP_004553107.1 PFAM: Protein of unknown function DUF736; KEGG: sjp:SJA_C1-18130 hypothetical protein YP_004553109.1 KEGG: sjp:SJA_C1-18160 hypothetical protein YP_004553111.1 PFAM: PilT protein, N-terminal; KEGG: rhi:NGR_b02890 putative plasmid stability protein YP_004553112.1 TIGRFAM: Prevent-host-death protein; KEGG: rec:RHECIAT_CH0000919 hypothetical protein YP_004553113.1 KEGG: swi:Swit_5167 hypothetical protein YP_004553115.1 KEGG: sjp:SJA_P1-00570 hypothetical protein YP_004553117.1 KEGG: sjp:SJA_C1-18230 hypothetical protein YP_004553119.1 KEGG: cyn:Cyan7425_1712 nucleotide binding protein PINc; TIGRFAM: Protein of unknown function DUF132; PFAM: PilT protein, N-terminal YP_004553120.1 TIGRFAM: Prevent-host-death protein; KEGG: spc:Sputcn32_0429 prevent-host-death family protein YP_004553121.1 KEGG: dda:Dd703_0502 hypothetical protein YP_004553122.1 KEGG: sjp:SJA_C2-04540 hypothetical protein YP_004553124.1 KEGG: sjp:SJA_C1-18240 hypothetical protein YP_004553128.1 KEGG: swi:Swit_5238 hypothetical protein YP_004553129.1 PFAM: Protein of unknown function DUF1419; KEGG: mes:Meso_4149 hypothetical protein YP_004553130.1 PFAM: ATP-binding region, ATPase-like; KEGG: swi:Swit_5188 hypothetical protein YP_004553131.1 KEGG: sal:Sala_0426 hypothetical protein YP_004553133.1 KEGG: ajs:Ajs_4206 methyltransferase type 11 YP_004553134.1 KEGG: sal:Sala_2658 hypothetical protein YP_004553136.1 KEGG: sjp:SJA_P1-00410 hypothetical protein YP_004553137.1 KEGG: swi:Swit_5254 hypothetical protein YP_004553138.1 KEGG: sjp:SJA_P1-00450 hypothetical protein YP_004553139.1 KEGG: sjp:SJA_C1-18490 putative type I restriction-modification system methyltransferase subunit YP_004553141.1 KEGG: swi:Swit_5187 hypothetical protein YP_004553143.1 KEGG: ccs:CCNA_03080 antitoxin protein ParD-4; TIGRFAM: Putative addiction module antidote protein, CC2985; PFAM: Putative addiction module antidote protein, CC2985 YP_004553144.1 PFAM: Plasmid stabilisation system; KEGG: cak:Caul_1510 plasmid stabilization system protein YP_004553145.1 KEGG: gox:GOX2542 DNA methylase; PFAM: DNA/RNA helicase, C-terminal; SMART: DEAD-like helicase, N-terminal YP_004553147.1 KEGG: sjp:SJA_P1-00500 hypothetical protein YP_004553148.1 KEGG: oan:Oant_4739 hypothetical protein YP_004553150.1 KEGG: swi:Swit_5191 UBA/ThiF-type NAD/FAD binding protein; TIGRFAM: PRTRC system ThiF family protein; PFAM: UBA/THIF-type NAD/FAD binding fold YP_004553151.1 TIGRFAM: PRTRC system protein A; KEGG: sjp:SJA_C1-18320 hypothetical protein YP_004553152.1 TIGRFAM: PRTRC system protein B; KEGG: sjp:SJA_C1-18330 hypothetical protein YP_004553153.1 KEGG: swi:Swit_5194 hypothetical protein YP_004553154.1 KEGG: sjp:SJA_C1-18360 hypothetical protein YP_004553155.1 TIGRFAM: PRTRC system protein E; KEGG: swi:Swit_5195 hypothetical protein YP_004553156.1 TIGRFAM: PRTRC system ParB family protein; ParB-like partition protein; PFAM: ParB-like nuclease; KEGG: sjp:SJA_C1-18380 ParB-like protein; SMART: ParB-like nuclease YP_004553157.1 KEGG: sjp:SJA_P1-00710 virulence-associated protein E YP_004553158.1 KEGG: azc:AZC_0618 regulatory protein; manually curated; PFAM: HTH transcriptional regulator, MarR YP_004553159.1 KEGG: sjp:SJA_P1-00200 hypothetical protein YP_004553160.1 PFAM: Integrase, catalytic core, phage; KEGG: rpx:Rpdx1_2131 integrase family protein YP_004553161.1 KEGG: sjp:SJA_C1-19130 AsnC-family transcriptional regulator; PFAM: Transcription regulator, AsnC-type, C-terminal; SMART: Transcription regulator, AsnC-type YP_004553162.1 KEGG: sjp:SJA_C1-19160 putative sugar transferase; TIGRFAM: Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: Bacterial sugar transferase YP_004553163.1 KEGG: sjp:SJA_C1-19170 hypothetical protein YP_004553164.1 KEGG: sjp:SJA_C1-19180 hypothetical protein YP_004553165.1 PFAM: Polysaccharide export protein; Soluble ligand binding domain; KEGG: sjp:SJA_C1-19190 periplasmic protein involved in polysaccharide export YP_004553166.1 SMART: ATPase, AAA+ type, core; KEGG: sjp:SJA_C1-19200 predicted ATPase YP_004553167.1 PFAM: Lipopolysaccharide biosynthesis; KEGG: sjp:SJA_C1-19210 uncharacterized protein involved in exopolysaccharide biosynthesis YP_004553168.1 KEGG: sjp:SJA_C1-19220 putative capsular polysaccharide biosynthesis protein YP_004553169.1 KEGG: sjp:SJA_C1-19230 putative glycosyltransferase; TIGRFAM: Glycosyl transferase WecB/TagA/CpsF; PFAM: Glycosyl transferase WecB/TagA/CpsF YP_004553170.1 KEGG: sjp:SJA_C1-19240 putative polysaccharide biosynthesis protein YP_004553171.1 PFAM: O-antigen ligase-related; KEGG: sjp:SJA_C1-19250 exopolysaccharide production protein YP_004553172.1 PFAM: Glycosyl transferase, family 2; KEGG: sjp:SJA_C1-19260 putative glycosyltransferase YP_004553173.1 PFAM: Glycosyl transferase, family 2; KEGG: sjp:SJA_C1-19270 putative glycosyltransferase YP_004553174.1 PFAM: Glycosyl transferase, family 2; KEGG: sjp:SJA_C1-19280 putative glycosyltransferase YP_004553175.1 PFAM: Glycoside hydrolase, family 10; KEGG: sjp:SJA_C1-19290 beta-1,4-xylanase; SMART: Glycoside hydrolase, family 10 YP_004553176.1 PFAM: Acyltransferase 3; KEGG: sjp:SJA_C1-19300 putative acyltransferase YP_004553177.1 PFAM: Glycosyl transferase, family 2; KEGG: sjp:SJA_C1-19310 putative glycosyltransferase YP_004553178.1 PFAM: Glycoside hydrolase, family 16; KEGG: sjp:SJA_C1-19320 putative beta-glucanase YP_004553179.1 TIGRFAM: Nucleotide sugar dehydrogenase; KEGG: sjp:SJA_C1-19330 UDP-glucose 6-dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase, N-terminal; UDP-glucose/GDP-mannose dehydrogenase, dimerisation; UDP-glucose/GDP-mannose dehydrogenase, C-terminal YP_004553180.1 PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: sjp:SJA_C1-03910 TonB-dependent receptor-like protein YP_004553182.1 KEGG: pzu:PHZ_c2556 permease of the major facilitator superfamily; manually curated; PFAM: Major facilitator superfamily MFS-1 YP_004553183.1 KEGG: bja:bll7607 putative aldehyde dehydrogenase; PFAM: Aldehyde dehydrogenase YP_004553184.1 PFAM: Ferredoxin soy-like; KEGG: rec:RHECIAT_PB0000258 putative ferredoxin protein YP_004553185.1 KEGG: cytochrome P450; PFAM: Cytochrome P450 YP_004553186.1 PFAM: Acyl-CoA oxidase/dehydrogenase, central region; Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, type 1; KEGG: pzu:PHZ_c2774 acyl-CoA dehydrogenase YP_004553187.1 KEGG: ccs:CCNA_02129 short-chain specific acyl-CoA dehydrogenase; PFAM: Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, type 1 YP_004553188.1 KEGG: pzu:PHZ_c1983 alcohol dehydrogenase, zinc-containing; PFAM: Alcohol dehydrogenase, zinc-binding YP_004553189.1 PFAM: CoA-transferase family III; KEGG: pzu:PHZ_c3026 L-carnitine dehydratase/bile acid-inducible protein F YP_004553190.1 KEGG: xau:Xaut_1345 hypothetical protein YP_004553191.1 KEGG: dia:Dtpsy_0148 acyl-CoA dehydrogenase domain protein; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, central region YP_004553192.1 KEGG: pzu:PHZ_c2007 acetyl-CoA acetyltransferase; TIGRFAM: Thiolase YP_004553193.1 PFAM: Cytochrome c, class I; KEGG: sjp:SJA_C1-15940 cytochrome c YP_004553194.1 KEGG: bbr:BB4584 hypothetical protein; PFAM: CoA-transferase family III YP_004553195.1 KEGG: ccs:CCNA_00123 3-hydroxyacyl CoA dehydrogenase; PFAM: Short-chain dehydrogenase/reductase SDR YP_004553196.1 PFAM: Crotonase, core; KEGG: bur:Bcep18194_B1434 enoyl-CoA hydratase YP_004553197.1 KEGG: ccs:CCNA_03184 acyl-CoA dehydrogenase; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, central region YP_004553198.1 KEGG: sjp:SJA_C1-19340 competence/damage-inducible protein CinA N-terminal domain; manually curated; PFAM: Molybdopterin binding YP_004553199.1 TIGRFAM: Peptidase M24A, methionine aminopeptidase, subfamily 1; KEGG: sjp:SJA_C1-19350 methionyl aminopeptidase; PFAM: Peptidase M24, structural domain YP_004553200.1 PFAM: Nitrogen regulatory protein PII; KEGG: sjp:SJA_C1-19360 nitrogen regulatory protein P-II 1 YP_004553201.1 TIGRFAM: Glutamine synthetase type I; KEGG: sjp:SJA_C1-19370 glutamine synthetase; PFAM: Glutamine synthetase, catalytic region; Glutamine synthetase, beta-Grasp YP_004553202.1 PFAM: 2-nitropropane dioxygenase, NPD; KEGG: sjp:SJA_C1-19380 2-nitropropane dioxygenase family protein YP_004553203.1 PFAM: Protein of unknown function DUF2328; KEGG: sjp:SJA_C1-19390 hypothetical protein YP_004553204.1 KEGG: sjp:SJA_C1-19400 putative protease YP_004553205.1 TIGRFAM: Pseudouridine synthase, RluC/RluD; PFAM: Pseudouridine synthase, RsuA and RluB/C/D/E/F; RNA-binding S4; KEGG: sjp:SJA_C1-19410 ribosomal large subunit pseudouridine synthase D; SMART: RNA-binding S4 YP_004553206.1 KEGG: sjp:SJA_C1-19420 RNA polymerase sigma-32 factor; TIGRFAM: RNA polymerase sigma factor RpoH, proteobacteria; RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma-70 region 1.2; RNA polymerase sigma-70 region 4 YP_004553207.1 PFAM: Glutathione-dependent formaldehyde-activating, GFA; KEGG: msl:Msil_0326 glutathione-dependent formaldehyde-activating GFA YP_004553208.1 KEGG: sjp:SJA_C1-19430 monofunctional biosynthetic peptidoglycan transglycosylase; TIGRFAM: Monofunctional biosynthetic peptidoglycan transglycosylase; PFAM: Glycosyl transferase, family 51 YP_004553209.1 PFAM: TonB-dependent receptor, plug; KEGG: swi:Swit_1116 TonB-dependent receptor, plug YP_004553210.1 SMART: ATPase, AAA+ type, core; TIGRFAM: Clp protease, ATP-binding subunit ClpX; KEGG: sjp:SJA_C1-19450 ATP-dependent Clp protease ATP-binding subunit ClpX; HAMAP: Clp protease, ATP-binding subunit ClpX; PFAM: ATPase associated with various cellular activities, AAA-2; Zinc finger, C4-type; Clp ATPase, C-terminal YP_004553211.1 PFAM: Peptidase S14, ClpP; TIGRFAM: Peptidase S14, ClpP; HAMAP: ATP-dependent Clp protease proteolytic subunit; KEGG: sjp:SJA_C1-19460 ATP-dependent Clp protease protease subunit YP_004553212.1 PFAM: Glycosyl transferase, family 2; KEGG: sjp:SJA_C1-19470 putative glycosyltransferase YP_004553213.1 TIGRFAM: Trigger factor; HAMAP: Trigger factor; KEGG: sjp:SJA_C1-19480 trigger factor; PFAM: Trigger factor, C-terminal, bacterial; Trigger factor, ribosome-binding, bacterial; Peptidyl-prolyl cis-trans isomerase, FKBP-type YP_004553214.1 KEGG: sjp:SJA_C1-19490 hypothetical protein YP_004553215.1 manually curated; TIGRFAM: RNA polymerase sigma-70; KEGG: sjp:SJA_C1-19500 ECF-type sigma factor; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2 YP_004553216.1 PFAM: FecR protein; KEGG: sjp:SJA_C1-19510 Fe2+-dicitrate sensor membrane component YP_004553217.1 KEGG: sjp:SJA_C1-19520 NAD-dependent protein deacetylase; HAMAP: NAD-dependent deacetylase; PFAM: NAD-dependent histone deacetylase, silent information regulator Sir2 YP_004553218.1 PFAM: Dihydrodipicolinate reductase; TIGRFAM: Dihydrodipicolinate reductase, bacterial/plant; HAMAP: Dihydrodipicolinate reductase; KEGG: sjp:SJA_C1-19530 dihydrodipicolinate reductase YP_004553219.1 KEGG: sjp:SJA_C1-19540 putative endonuclease III; PFAM: HhH-GPD domain; Endonuclease III-like, iron-sulphur cluster loop motif; manually curated; TIGRFAM: Endonuclease III/Nth; SMART: HhH-GPD domain; Endonuclease III-like, iron-sulphur cluster loop motif YP_004553220.1 KEGG: sjp:SJA_C1-19550 hypothetical protein YP_004553221.1 PFAM: ATPase, K+ transporting, A subunit; TIGRFAM: ATPase, K+ transporting, A subunit; HAMAP: ATPase, K+ transporting, A subunit; KEGG: swi:Swit_1468 potassium-transporting ATPase, A subunit YP_004553222.1 PFAM: ATPase, P-type, ATPase-associated region; Haloacid dehalogenase-like hydrolase; TIGRFAM: Potassium-transporting ATPase, B chain; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; HAMAP: Potassium-transporting ATPase, B chain; KEGG: swi:Swit_1467 K+-transporting ATPase, B subunit YP_004553223.1 PFAM: Potassium transporting ATPase, C subunit; TIGRFAM: Potassium transporting ATPase, C subunit; HAMAP: Potassium transporting ATPase, C subunit; KEGG: swi:Swit_1466 potassium-transporting ATPase, C subunit YP_004553224.1 KEGG: swi:Swit_1465 osmosensitive K+ channel signal transduction histidine kinase; PFAM: Signal transduction histidine kinase, osmosensitive K+ channel sensor, N-terminal; UspA; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; ATP-binding region, ATPase-like; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; GAF YP_004553225.1 KEGG: swi:Swit_1464 two component transcriptional regulator; PFAM: Signal transduction response regulator, receiver region; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver region YP_004553227.1 KEGG: sjp:SJA_C1-23790 putative thioesterase YP_004553228.1 PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; KEGG: sjp:SJA_C1-23800 GntR-family transcriptional regulator YP_004553230.1 TIGRFAM: 3-oxoacid CoA-transferase, subunit A; KEGG: sjp:SJA_C1-23810 3-oxoacid CoA-transferase subunit A; PFAM: Coenzyme A transferase YP_004553231.1 TIGRFAM: 3-oxoacid CoA-transferase, subunit B; KEGG: sjp:SJA_C1-23820 3-oxoacid CoA-transferase subunit B; PFAM: Coenzyme A transferase YP_004553232.1 PFAM: Aldehyde dehydrogenase; KEGG: sjp:SJA_C1-23720 NAD-dependent aldehyde dehydrogenase YP_004553233.1 KEGG: sjp:SJA_C1-23730 putative apramycin biosynthesis protein YP_004553234.1 KEGG: sjp:SJA_C1-23740 choline dehydrogenase; PFAM: Glucose-methanol-choline oxidoreductase, N-terminal; Glucose-methanol-choline oxidoreductase, C-terminal YP_004553235.1 KEGG: sjp:SJA_C1-23750 IclR-family putative transcriptional regulator; PFAM: Transcriptional regulator IclR, N-terminal; Transcriptional regulator IclR, C-terminal; SMART: Transcriptional regulator IclR, N-terminal YP_004553236.1 KEGG: sjp:SJA_C1-23760 putative MFS permease; manually curated; PFAM: Major facilitator superfamily MFS-1 YP_004553238.1 KEGG: sjp:SJA_C1-23770 putative phosphohydrolase YP_004553239.1 PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: sjp:SJA_C1-23780 TonB-dependent receptor-like protein YP_004553240.1 KEGG: sjp:SJA_C1-20410 methylated-DNA-[protein]-cysteine S-methyltransferase; TIGRFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding; PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding; Methylguanine DNA methyltransferase, ribonuclease-like YP_004553241.1 KEGG: sjp:SJA_C1-20420 putative outer membrane protein; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT; PFAM: Outer membrane efflux protein YP_004553242.1 KEGG: sjp:SJA_C1-20430 hydrophobic/amphiphilic exporter-1; TIGRFAM: Hydrophobe/amphiphile efflux-1 HAE1; PFAM: Acriflavin resistance protein YP_004553243.1 KEGG: sjp:SJA_C1-20440 acriflavin resistance protein A; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD YP_004553244.1 KEGG: sjp:SJA_C1-20460 hypothetical protein YP_004553245.1 PFAM: Peptidase M16, C-terminal; Peptidase M16, N-terminal; KEGG: sjp:SJA_C1-20470 putative Zn-dependent peptidase YP_004553246.1 KEGG: sjp:SJA_C1-20480 putative helicase; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; DNA/RNA helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal YP_004553247.1 KEGG: sjp:SJA_C1-20490 general stress protein YP_004553248.1 PFAM: NIF system FeS cluster assembly, NifU-like scaffold, N-terminal; NIF system FeS cluster assembly, NifU, C-terminal; KEGG: sjp:SJA_C1-20500 nitrogen-fixing NifU-like protein YP_004553249.1 KEGG: sjp:SJA_C1-20510 putative protease; TIGRFAM: universal protein YeaZ; PFAM: Peptidase M22, glycoprotease YP_004553250.1 PFAM: GCN5-related N-acetyltransferase; KEGG: sjp:SJA_C1-20520 ribosomal-protein-alanine N-acetyltransferase YP_004553251.1 PFAM: ROSMUCR transcriptional regulator; KEGG: sjp:SJA_C1-20530 MucR-family transcriptional regulator YP_004553252.1 PFAM: Ferric-uptake regulator; KEGG: sjp:SJA_C1-20540 ferric uptake regulator Fur YP_004553253.1 manually curated; PFAM: Phospholipid/glycerol acyltransferase; KEGG: sjp:SJA_C1-20550 1-acyl-sn-glycerol-3-phosphate acyltransferase; SMART: Phospholipid/glycerol acyltransferase YP_004553254.1 SMART: Elongator protein 3/MiaB/NifB; TIGRFAM: Methylthiotransferase; tRNA-i(6)A37 modification enzyme MiaB; KEGG: sjp:SJA_C1-20560 bifunctional enzyme involved in thiolation and methylation of tRNA; HAMAP: tRNA-i(6)A37 modification enzyme MiaB; PFAM: Methylthiotransferase, N-terminal; Radical SAM; Deoxyribonuclease/rho motif-related TRAM YP_004553255.1 PFAM: PhoH-like protein; KEGG: sjp:SJA_C1-20580 phosphate starvation-inducible protein PhoH YP_004553256.1 TIGRFAM: Uncharacterised protein family UPF0054; HAMAP: Uncharacterised protein family UPF0054; KEGG: sjp:SJA_C1-20590 putative metal-dependent hydrolase; PFAM: Uncharacterised protein family UPF0054 YP_004553257.1 PFAM: Cystathionine beta-synthase, core; Transporter-associated region; KEGG: sjp:SJA_C1-20600 magnesium and cobalt transporter YP_004553258.1 PFAM: Protein of unknown function DUF2142, membrane; KEGG: ccb:Clocel_0350 hypothetical protein YP_004553259.1 KEGG: sjp:SJA_C1-20610 putative phospholipid phosphatase; PFAM: Phosphatidic acid phosphatase type 2/haloperoxidase; SMART: Phosphatidic acid phosphatase type 2/haloperoxidase YP_004553260.1 TIGRFAM: Dihydrolipoamide dehydrogenase; KEGG: sjp:SJA_C1-20620 dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation YP_004553261.1 PFAM: Thioesterase superfamily; KEGG: sjp:SJA_C1-20630 acyl-CoA hydrolase YP_004553262.1 TIGRFAM: Dihydrolipoamide acetyltransferase, long form; KEGG: sjp:SJA_C1-20640 pyruvate dehydrogenase E2 component; PFAM: 2-oxoacid dehydrogenase acyltransferase, catalytic domain; Biotin/lipoyl attachment; E3 binding YP_004553263.1 PFAM: UspA; KEGG: sjp:SJA_C1-20650 universal stress protein UspA YP_004553264.1 PFAM: ABC-2 type transporter; KEGG: sjp:SJA_C1-20660 ABC-type transport system permease component YP_004553265.1 PFAM: ABC transporter-like; KEGG: sjp:SJA_C1-20670 ABC-type transport system ATPase component; SMART: ATPase, AAA+ type, core YP_004553266.1 KEGG: sjp:SJA_C1-20680 phospholipid N-methyltransferase YP_004553267.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: sjp:SJA_C1-20690 LysR-family transcriptional regulator YP_004553268.1 KEGG: sjp:SJA_C1-20700 butyryl-CoA dehydrogenase; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, central region YP_004553269.1 KEGG: sjp:SJA_C1-20710 enoyl-CoA hydratase/isomerase family protein; PFAM: Crotonase, core YP_004553270.1 TIGRFAM: 3-hydroxyisobutyrate dehydrogenase; KEGG: sjp:SJA_C1-20720 3-hydroxyisobutyrate dehydrogenase; PFAM: 6-phosphogluconate dehydrogenase, NAD-binding YP_004553271.1 PFAM: Crotonase, core; KEGG: sjp:SJA_C1-20730 enoyl-CoA hydratase YP_004553272.1 PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: sjp:SJA_C1-20740 glucose 1-dehydrogenase YP_004553273.1 PFAM: GTP cyclohydrolase I/Nitrile oxidoreductase; TIGRFAM: GTP cyclohydrolase I; HAMAP: GTP cyclohydrolase I; KEGG: sjp:SJA_C1-20750 GTP cyclohydrolase I YP_004553274.1 KEGG: sjp:SJA_C1-20760 MobA-related protein YP_004553275.1 PFAM: Protein of unknown function DUF894, DitE; KEGG: sjp:SJA_C1-20770 putative MFS permease YP_004553276.1 KEGG: sjp:SJA_C1-20790 acetyl-CoA acyltransferase; TIGRFAM: Thiolase YP_004553277.1 KEGG: sjp:SJA_C1-20800 3-hydroxyacyl-CoA dehydrogenase; PFAM: 3-hydroxyacyl-CoA dehydrogenase, NAD binding; Crotonase, core; 3-hydroxyacyl-CoA dehydrogenase, C-terminal YP_004553278.1 TIGRFAM: UDP-glucose 4-epimerase; KEGG: sjp:SJA_C1-20820 UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase YP_004553279.1 KEGG: sjp:SJA_C1-20830 6-phosphogluconolactonase; TIGRFAM: 6-phosphogluconolactonase YP_004553280.1 KEGG: sjp:SJA_C1-20840 hypothetical protein YP_004553281.1 KEGG: sjp:SJA_C1-20850 aspartate aminotransferase; PFAM: Aminotransferase, class I/II YP_004553282.1 PFAM: Alpha/beta hydrolase fold-1; KEGG: bmj:BMULJ_03337 chloride peroxidase YP_004553283.1 PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: sme:SMa1887 putative transcriptional regulator YP_004553284.1 TIGRFAM: Glucose-6-phosphate dehydrogenase; KEGG: sjp:SJA_C1-20860 glucose-6-phosphate 1-dehydrogenase; PFAM: Glucose-6-phosphate dehydrogenase YP_004553285.1 TIGRFAM: 6-phosphogluconate dehydratase; KEGG: sjp:SJA_C1-20870 phosphogluconate dehydratase; PFAM: Dihydroxy-acid/6-phosphogluconate dehydratase YP_004553286.1 TIGRFAM: Glucokinase; KEGG: sjp:SJA_C1-20880 glucokinase; PFAM: Glucokinase YP_004553287.1 TIGRFAM: KDPG/KHG aldolase; KEGG: sjp:SJA_C1-20890 2-dehydro-3-deoxyphosphogluconate aldolase; PFAM: KDPG/KHG aldolase YP_004553288.1 KEGG: sjp:SJA_C1-20900 hypothetical protein YP_004553289.1 KEGG: sjp:SJA_C1-20910 putative acetyltransferase YP_004553290.1 manually curated; KEGG: sjp:SJA_C1-20920 porphobilinogen synthase; PFAM: Tetrapyrrole biosynthesis, porphobilinogen synthase YP_004553291.1 PFAM: Peptidase M28; KEGG: sjp:SJA_C1-20930 putative aminopeptidase YP_004553292.1 KEGG: sjp:SJA_C1-20940 hypothetical protein YP_004553293.1 PFAM: Ammonium transporter; KEGG: sjp:SJA_C1-20950 ammonia permease YP_004553294.1 PFAM: Glycosyl transferase, family 2; KEGG: sjp:SJA_C1-20960 hypothetical protein YP_004553295.1 PFAM: General substrate transporter; KEGG: sjp:SJA_C1-20970 putative MFS permease YP_004553296.1 KEGG: sjp:SJA_C1-20980 cytochrome o ubiquinol oxidase subunit II; TIGRFAM: Cytochrome o ubiquinol oxidase subunit II; PFAM: COX aromatic rich; Cytochrome c oxidase subunit II C-terminal YP_004553297.1 PFAM: Cytochrome c oxidase, subunit I; manually curated; TIGRFAM: Cytochrome o ubiquinol oxidase, subunit I; KEGG: sjp:SJA_C1-20990 cytochrome o ubiquinol oxidase subunit I YP_004553298.1 KEGG: sjp:SJA_C1-21000 cytochrome o ubiquinol oxidase subunit III; TIGRFAM: Cytochrome o ubiquinol oxidase, subunit III; PFAM: Cytochrome c oxidase, subunit III YP_004553299.1 KEGG: sjp:SJA_C1-21010 cytochrome o ubiquinol oxidase operon protein CyoD; TIGRFAM: Cytochrome o ubiquinol oxidase subunit IV; PFAM: Cytochrome C oxidase subunit IV prokaryotic YP_004553300.1 PFAM: Surfeit locus 1; KEGG: sjp:SJA_C1-21020 SURF1 protein YP_004553301.1 KEGG: sjp:SJA_C1-21030 signal transduction histidine kinase; PFAM: ATP-binding region, ATPase-like; SMART: ATP-binding region, ATPase-like YP_004553302.1 KEGG: sjp:SJA_C1-21040 CheY-like response regulator; PFAM: Signal transduction response regulator, receiver region; Helix-turn-helix, Fis-type; SMART: Signal transduction response regulator, receiver region YP_004553303.1 TIGRFAM: PAS; PFAM: ATP-binding region, ATPase-like; PAS fold; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; Signal transduction response regulator, receiver region; KEGG: sjp:SJA_C1-22710 two-component system sensor sporulation kinase C; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; PAS; PAC motif; Signal transduction response regulator, receiver region YP_004553304.1 PFAM: Alpha/beta hydrolase fold-1; KEGG: sjp:SJA_C1-21860 putative alpha/beta hydrolase YP_004553305.1 PFAM: 2-nitropropane dioxygenase, NPD; KEGG: sjp:SJA_C1-21850 2-nitropropane dioxygenase family protein YP_004553306.1 KEGG: sjp:SJA_C1-22720 hypothetical protein YP_004553307.1 KEGG: sjp:SJA_C1-22730 serine O-acetyltransferase YP_004553308.1 PFAM: Protein of unknown function DUF81; KEGG: sjp:SJA_C1-22740 putative permease YP_004553309.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: sjp:SJA_C1-22750 LysR-family transcriptional regulator YP_004553310.1 PFAM: Molybdopterin biosynthesis MoaE; KEGG: sjp:SJA_C1-22760 molybdenum cofactor biosynthesis protein E YP_004553311.1 KEGG: sjp:SJA_C1-22770 molybdenum cofactor biosynthesis protein D; TIGRFAM: Molybdopterin converting factor, subunit 1; PFAM: ThiamineS YP_004553312.1 KEGG: sjp:SJA_C1-22780 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase YP_004553313.1 PFAM: Major facilitator superfamily MFS-1; KEGG: sjp:SJA_C1-22790 putative MFS permease YP_004553314.1 TIGRFAM: Penicillin-binding protein 1A; KEGG: sjp:SJA_C1-22810 penicillin-binding protein; PFAM: Glycosyl transferase, family 51; Penicillin-binding protein, transpeptidase YP_004553315.1 PFAM: NIF system FeS cluster assembly, NifU, N-terminal; KEGG: sjp:SJA_C1-22820 NifU-like protein YP_004553316.1 PFAM: Cation/H+ exchanger; Regulator of K+ conductance, N-terminal; KEGG: sjp:SJA_C1-22830 monovalent cation:H+ antiporter-2 YP_004553317.1 PFAM: Protein of unknown function DUF423; KEGG: sjp:SJA_C1-22840 hypothetical protein YP_004553318.1 KEGG: sjp:SJA_C1-22850 Fur-family ferric uptake regulator YP_004553319.1 PFAM: Transketolase-like, pyrimidine-binding domain; Transketolase, C-terminal; TIGRFAM: Deoxyxylulose-5-phosphate synthase; HAMAP: Deoxyxylulose-5-phosphate synthase; KEGG: sjp:SJA_C1-22860 1-deoxy-D-xylulose-5-phosphate synthase YP_004553320.1 PFAM: Activator of Hsp90 ATPase homologue 1-like; KEGG: sjp:SJA_C1-22870 hypothetical protein YP_004553321.1 SMART: HTH transcriptional regulator, ArsR; KEGG: sjp:SJA_C1-22880 ArsR-family transcriptional regulator YP_004553322.1 KEGG: sjp:SJA_C1-22890 hypothetical protein YP_004553323.1 TIGRFAM: Peptidase A8, signal peptidase II; HAMAP: Peptidase A8, signal peptidase II; KEGG: sjp:SJA_C1-22900 signal peptidase II; PFAM: Peptidase A8, signal peptidase II YP_004553324.1 TIGRFAM: Isoleucyl-tRNA synthetase, class Ia; HAMAP: Isoleucyl-tRNA synthetase; KEGG: sjp:SJA_C1-22910 isoleucyl-tRNA synthetase YP_004553325.1 TIGRFAM: Riboflavin kinase/FAD synthetase; KEGG: sjp:SJA_C1-22920 riboflavin kinase; PFAM: FAD synthetase; Riboflavin kinase YP_004553326.1 KEGG: sjp:SJA_C1-22930 dihydrofolate reductase; PFAM: Dihydrofolate reductase region YP_004553327.1 TIGRFAM: Phosphoribosylaminoimidazole carboxylase, ATPase subunit; KEGG: sjp:SJA_C1-22940 phosphoribosylaminoimidazole carboxylase ATPase subunit; PFAM: ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type YP_004553328.1 TIGRFAM: 1-(5-Phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; KEGG: sjp:SJA_C1-22950 phosphoribosylaminoimidazole carboxylase catalytic subunit; PFAM: 1-(5-Phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase YP_004553329.1 PFAM: Phosphoglycerate mutase; TIGRFAM: Phosphoglycerate mutase 1; HAMAP: Phosphoglycerate mutase 1; KEGG: sjp:SJA_C1-22960 phosphoglycerate mutase YP_004553330.1 KEGG: sjp:SJA_C1-22970 protease IV; TIGRFAM: Peptidase S49, protease IV; Peptidase S49, SppA; PFAM: Peptidase S49 YP_004553331.1 PFAM: Uncharacterised protein family UPF0126; KEGG: sjp:SJA_C1-23050 hypothetical protein YP_004553332.1 KEGG: sjp:SJA_C1-23060 glutathione peroxidase; PFAM: Glutathione peroxidase YP_004553333.1 PFAM: Protein of unknown function DUF125, transmembrane; KEGG: sjp:SJA_C1-23070 hypothetical protein YP_004553334.1 KEGG: sjp:SJA_C1-23080 putative ABC-type transporter ATPase component; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core YP_004553335.1 PFAM: Protein of unknown function DUF541; KEGG: sjp:SJA_C1-23090 hypothetical protein YP_004553336.1 KEGG: sjp:SJA_C1-23100 hypothetical protein YP_004553337.1 KEGG: sjp:SJA_C1-23110 OmpR-family two-component system response regulator PhoP; PFAM: Signal transduction response regulator, receiver region; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver region YP_004553338.1 KEGG: sjp:SJA_C1-23120 two-component system sensor histidine kinase PhoQ; PFAM: ATP-binding region, ATPase-like; HAMP linker domain; SMART: ATP-binding region, ATPase-like YP_004553339.1 PFAM: Protein of unknown function DUF454; KEGG: sjp:SJA_C1-23130 hypothetical protein YP_004553340.1 TIGRFAM: Aconitase/iron regulatory protein 2; KEGG: sjp:SJA_C1-23180 aconitate hydratase 1; PFAM: Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha; Aconitase A/isopropylmalate dehydratase small subunit, swivel YP_004553341.1 KEGG: sjp:SJA_C1-23190 hypothetical protein YP_004553342.1 KEGG: sjp:SJA_C1-23200 hypothetical protein YP_004553343.1 KEGG: sjp:SJA_C1-23210 hypothetical protein; HAMAP: Protein of unknown function DUF1328; PFAM: Protein of unknown function DUF1328 YP_004553344.1 PFAM: Copper resistance B precursor; KEGG: sjp:SJA_C1-23220 copper resistance protein CopB YP_004553345.1 manually curated; TIGRFAM: Copper-resistance protein CopA; Twin-arginine translocation pathway, signal sequence; KEGG: sjp:SJA_C1-23230 copper resistance protein CopA; PFAM: Multicopper oxidase, type 3; Multicopper oxidase, type 1; Multicopper oxidase, type 2 YP_004553346.1 KEGG: sjp:SJA_C1-23240 glyoxylate reductase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region YP_004553347.1 PFAM: Protein of unknown function DUF1058; KEGG: sjp:SJA_C1-23250 hypothetical protein YP_004553348.1 KEGG: sjp:SJA_C1-23260 proton-dependent oligopeptide transporter; TIGRFAM: Amino acid/peptide transporter; PFAM: Oligopeptide transporter YP_004553349.1 PFAM: Nitroreductase-like; KEGG: sjp:SJA_C1-23270 putative nitroreductase YP_004553350.1 KEGG: sjp:SJA_C1-23280 GntR-family transcriptional regulator; PFAM: HTH transcriptional regulator, GntR; SMART: HTH transcriptional regulator, GntR YP_004553351.1 TIGRFAM: Signal transduction response regulator, PEP-CTERM system, putative; PFAM: RNA polymerase sigma factor 54, interaction; Signal transduction response regulator, receiver region; Helix-turn-helix, Fis-type; KEGG: sjp:SJA_C1-23290 two-component system response regulator AtoC; SMART: Signal transduction response regulator, receiver region; ATPase, AAA+ type, core YP_004553352.1 TIGRFAM: Signal transduction histidine kinase, PEP-CTERM system, putative; PFAM: ATP-binding region, ATPase-like; KEGG: sjp:SJA_C1-23300 signal transduction histidine kinase; SMART: ATP-binding region, ATPase-like YP_004553353.1 KEGG: sjp:SJA_C1-23310 putative sugar transferase; TIGRFAM: Sugar transferase, PEP-CTERM system associated; Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: Bacterial sugar transferase YP_004553354.1 KEGG: sjp:SJA_C1-23320 hypothetical protein YP_004553355.1 KEGG: sjp:SJA_C1-23330 ECF-type sigma factor; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2 YP_004553356.1 KEGG: sjp:SJA_C1-23340 hypothetical protein YP_004553357.1 KEGG: sjp:SJA_C1-23350 CheY-like response regulator; PFAM: Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region YP_004553358.1 KEGG: sjp:SJA_C1-23370 hypothetical protein YP_004553359.1 PFAM: Signal transduction histidine kinase, subgroup 2, dimerisation and phosphoacceptor region; KEGG: sjp:SJA_C1-23380 putative signal transduction histidine kinase YP_004553360.1 PFAM: Queuine/other tRNA-ribosyltransferase; TIGRFAM: Queuine tRNA-ribosyltransferase; Queuine/other tRNA-ribosyltransferase; HAMAP: Queuine tRNA-ribosyltransferase; KEGG: sjp:SJA_C1-13450 queuine tRNA-ribosyltransferase YP_004553361.1 KEGG: sjp:SJA_C1-13440 hypothetical protein YP_004553362.1 PFAM: Crotonase, core; KEGG: sjp:SJA_C1-13430 enoyl-CoA hydratase YP_004553363.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; KEGG: sjp:SJA_C1-13420 putative signal transduction protein; SMART: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted YP_004553364.1 PFAM: GCN5-related N-acetyltransferase; KEGG: sjp:SJA_C1-13410 putative acetyltransferase YP_004553365.1 PFAM: Protein of unknown function DUF1467; KEGG: sjp:SJA_C1-13400 hypothetical protein YP_004553366.1 PFAM: RNA-metabolising metallo-beta-lactamase; KEGG: sjp:SJA_C1-13390 putative hydrolase YP_004553367.1 PFAM: Bordetella pertussis Bvg accessory factor; TIGRFAM: Bordetella pertussis Bvg accessory factor; HAMAP: Type III pantothenate kinase; KEGG: sjp:SJA_C1-13380 putative transcriptional regulator YP_004553368.1 KEGG: sjp:SJA_C1-13370 biotin-[acetyl-CoA-carboxylase] ligase; TIGRFAM: Biotin--acetyl-CoA-carboxylase ligase; PFAM: Biotin/lipoate A/B protein ligase; Biotin protein ligase, C-terminal YP_004553369.1 PFAM: NADH:ubiquinone/plastoquinone oxidoreductase; TIGRFAM: NADH-quinone oxidoreductase, chain N; HAMAP: NAD(P)H-quinone oxidoreductase subunit 2; KEGG: sjp:SJA_C1-13360 NADH dehydrogenase I chain N YP_004553370.1 TIGRFAM: NADH-quinone oxidoreductase, chain M; KEGG: sjp:SJA_C1-13350 NADH dehydrogenase I chain M; PFAM: NADH:ubiquinone/plastoquinone oxidoreductase YP_004553371.1 TIGRFAM: NADH-plastoquinone oxidoreductase, chain 5; KEGG: sjp:SJA_C1-13340 NADH dehydrogenase I chain L; PFAM: NADH:ubiquinone/plastoquinone oxidoreductase; NADH:ubiquinone oxidoreductase, chain 5/L, N-terminal; NADH dehydrogenase subunit 5, C-terminal YP_004553372.1 KEGG: sjp:SJA_C1-13330 NADH dehydrogenase I chain K; HAMAP: NAD(P)H-quinone oxidoreductase subunit 4L; PFAM: NADH:ubiquinone/quinone oxidoreductase, chain 4L YP_004553373.1 PFAM: NADH:ubiquinone/plastoquinone oxidoreductase, chain 6; KEGG: sjp:SJA_C1-13320 NADH dehydrogenase I chain J YP_004553374.1 PFAM: 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; TIGRFAM: NADH-quinone oxidoreductase, chain I; HAMAP: NADH-quinone oxidoreductase, chain I; KEGG: sjp:SJA_C1-13310 NADH dehydrogenase I chain I YP_004553375.1 HAMAP: NAD(P)H-quinone oxidoreductase subunit 1; KEGG: sjp:SJA_C1-13300 NADH dehydrogenase I chain H; PFAM: NADH:ubiquinone oxidoreductase, subunit 1 YP_004553376.1 TIGRFAM: NADH:ubiquinone oxidoreductase, subunit G; KEGG: sjp:SJA_C1-13290 NADH dehydrogenase I chain G; PFAM: Molybdopterin oxidoreductase; NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding; Ferredoxin; NADH-quinone oxidoreductase, chain G, C-terminal YP_004553377.1 TIGRFAM: NADH ubiquinone oxidoreductase, F subunit; KEGG: sjp:SJA_C1-13270 NADH dehydrogenase I chain F; PFAM: NADH:ubiquinone oxidoreductase, 51kDa subunit; Soluble ligand binding domain; NADH ubiquinone oxidoreductase, F subunit, iron sulphur binding YP_004553378.1 TIGRFAM: NADH:ubiquinone oxidoreductase, 24kDa subunit; KEGG: sjp:SJA_C1-13260 NADH dehydrogenase I chain E; PFAM: NADH:ubiquinone oxidoreductase, 24kDa subunit YP_004553379.1 PFAM: NADH-quinone oxidoreductase, subunit D; TIGRFAM: NADH dehydrogenase I, D subunit; HAMAP: NAD(P)H-quinone oxidoreductase subunit H; KEGG: sjp:SJA_C1-13240 NADH dehydrogenase I chain D YP_004553380.1 PFAM: NADH:ubiquinone oxidoreductase, 30kDa subunit; TIGRFAM: NADH (or F420H2) dehydrogenase, subunit C; HAMAP: NAD(P)H-quinone oxidoreductase subunit J; KEGG: sjp:SJA_C1-13230 NADH dehydrogenase I chain C YP_004553381.1 PFAM: NADH:ubiquinone oxidoreductase-like, 20kDa subunit; TIGRFAM: NADH:ubiquinone oxidoreductase, 20kDa subunit; HAMAP: NAD(P)H-quinone oxidoreductase subunit K; KEGG: sjp:SJA_C1-13220 NADH dehydrogenase I chain B YP_004553382.1 KEGG: sjp:SJA_C1-13210 NADH dehydrogenase I chain A; HAMAP: NAD(P)H-quinone oxidoreductase subunit 3; PFAM: NADH:ubiquinone/plastoquinone oxidoreductase, chain 3 YP_004553383.1 PFAM: Inositol monophosphatase; KEGG: sjp:SJA_C1-13200 myo-inositol-1(or 4)-monophosphatase YP_004553384.1 TIGRFAM: Translation elongation factor P; HAMAP: Translation elongation factor P; KEGG: sjp:SJA_C1-13190 elongation factor EF-P; PFAM: Elongation factor P, C-terminal; Translation elongation factor P/YeiP, central; Translation elongation factor, KOW-like YP_004553385.1 PFAM: Peptidase M23; KEGG: sjp:SJA_C1-13180 putative metalloendopeptidase YP_004553386.1 PFAM: YkuD domain; Peptidoglycan binding-like; KEGG: sjp:SJA_C1-13170 hypothetical protein YP_004553387.1 PFAM: Thiamine monophosphate synthase; TIGRFAM: Thiamine monophosphate synthase; HAMAP: Thiamine-phosphate pyrophosphorylase; KEGG: sjp:SJA_C1-13150 thiamine-phosphate pyrophosphorylase YP_004553388.1 PFAM: Protein of unknown function DUF72; KEGG: sjp:SJA_C1-13140 hypothetical protein YP_004553389.1 PFAM: Fructose-bisphosphate aldolase, class-I; KEGG: sjp:SJA_C1-13130 fructose-bisphosphate aldolase YP_004553390.1 HAMAP: Phosphoglycerate kinase; KEGG: sjp:SJA_C1-13110 phosphoglycerate kinase; PFAM: Phosphoglycerate kinase YP_004553391.1 TIGRFAM: Glyceraldehyde-3-phosphate dehydrogenase, type I; KEGG: sjp:SJA_C1-13100 glyceraldehyde-3-phosphate dehydrogenase; PFAM: Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain; Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain YP_004553392.1 TIGRFAM: Transketolase, bacterial-like; KEGG: sjp:SJA_C1-13090 transketolase; PFAM: Transketolase, N-terminal; Transketolase-like, pyrimidine-binding domain; Transketolase, C-terminal YP_004553393.1 KEGG: sjp:SJA_C1-13080 hypothetical protein YP_004553394.1 PFAM: Cell division protein ZapA-like; KEGG: sjp:SJA_C1-13070 hypothetical protein YP_004553395.1 KEGG: sjp:SJA_C1-13060 5-formyltetrahydrofolate cyclo-ligase; TIGRFAM: 5-formyltetrahydrofolate cyclo-ligase; PFAM: 5-formyltetrahydrofolate cyclo-ligase YP_004553396.1 KEGG: sjp:SJA_C1-13050 hypothetical protein YP_004553397.1 PFAM: Uncharacterised protein family UPF0118; KEGG: sjp:SJA_C1-13030 putative permease YP_004553398.1 KEGG: sjp:SJA_C1-13020 hypothetical protein YP_004553399.1 KEGG: sjp:SJA_C1-13010 pyruvate dehydrogenase E2 component; PFAM: 2-oxoacid dehydrogenase acyltransferase, catalytic domain; Biotin/lipoyl attachment; E3 binding YP_004553400.1 KEGG: sjp:SJA_C1-13000 2-oxoisovalerate dehydrogenase beta subunit; PFAM: Transketolase-like, pyrimidine-binding domain; Transketolase, C-terminal YP_004553401.1 KEGG: sjp:SJA_C1-12990 2-oxoisovalerate dehydrogenase alpha subunit; PFAM: Dehydrogenase, E1 component YP_004553402.1 KEGG: sjp:SJA_C1-12980 thymidylate synthase; manually curated; TIGRFAM: Thymidylate synthase, C-terminal; PFAM: Thymidylate synthase, C-terminal; HAMAP: Thymidylate synthase YP_004553403.1 KEGG: sjp:SJA_C1-12940 adenylosuccinate lyase; TIGRFAM: Adenylosuccinate lyase; PFAM: Fumarate lyase; Adenylosuccinate lyase, C-terminal YP_004553404.1 KEGG: sjp:SJA_C1-12930 hypothetical protein YP_004553405.1 KEGG: sjp:SJA_C1-12920 hypothetical protein YP_004553406.1 KEGG: sjp:SJA_C1-12850 MFS transporter; TIGRFAM: Sugar/inositol transporter; PFAM: General substrate transporter YP_004553407.1 PFAM: Acyltransferase 3; KEGG: sjp:SJA_C1-15290 putative acetyltransferase YP_004553408.1 PFAM: Pseudouridine synthase, RsuA and RluB/C/D/E/F; KEGG: sjp:SJA_C1-15280 pseudouridylate synthase YP_004553409.1 PFAM: Class I peptide chain release factor; KEGG: sjp:SJA_C1-15270 protein chain release factor B YP_004553410.1 PFAM: GAF; KEGG: sjp:SJA_C1-15260 GAF domain-containing protein YP_004553411.1 KEGG: sjp:SJA_C1-15250 hypothetical protein YP_004553412.1 TIGRFAM: Diguanylate cyclase, predicted; PAS; PFAM: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; PAS fold-3; KEGG: sjp:SJA_C1-15230 putative signal transduction protein; SMART: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; PAC motif; PAS YP_004553413.1 HAMAP: Arginine-tRNA-protein transferase, predicted, prokaryotic; KEGG: sjp:SJA_C1-15210 putative arginyl-tRNA/protein arginylyltransferase; PFAM: Arginine-tRNA-protein transferase, C-terminal; Arginine-tRNA-protein transferase, N-terminal YP_004553414.1 KEGG: sjp:SJA_C1-15200 threonine dehydratase; TIGRFAM: Threonine dehydratase II; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit; Amino acid-binding ACT YP_004553415.1 KEGG: sjp:SJA_C1-15190 3-hydroxyisobutyrate dehydrogenase; PFAM: 6-phosphogluconate dehydrogenase, NAD-binding YP_004553416.1 PFAM: Amidohydrolase 3; KEGG: sjp:SJA_C1-15180 putative hydrolase YP_004553417.1 KEGG: sjp:SJA_C1-15170 putative MFS permease YP_004553418.1 TIGRFAM: Methyltransferase FkbM; KEGG: sjp:SJA_C1-15160 SAM-dependent methyltransferase YP_004553419.1 PFAM: Glycosyl transferase, group 1; KEGG: sjp:SJA_C1-15150 putative glycosyltransferase YP_004553420.1 KEGG: sjp:SJA_C1-15140 hypothetical protein YP_004553421.1 PFAM: Methyltransferase type 11; KEGG: sjp:SJA_C1-15130 putative SAM-dependent methyltransferase YP_004553422.1 PFAM: Glycosyl transferase, family 2; KEGG: sjp:SJA_C1-15120 putative glycosyltransferase YP_004553423.1 TIGRFAM: Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; KEGG: sjp:SJA_C1-15110 putative colanic acid biosynthesis UDP-glucose lipid carrier transferase; PFAM: Bacterial sugar transferase YP_004553424.1 TIGRFAM: Exosortase 1 system-associated amidotransferase 1; Asparagine synthase, glutamine-hydrolyzing; KEGG: sjp:SJA_C1-15100 asparagine synthase; PFAM: Asparagine synthase; Glutamine amidotransferase, class-II YP_004553425.1 KEGG: sjp:SJA_C1-15090 hypothetical protein; TIGRFAM: Exosortase, EpsH; Methanolan biosynthesis EpsI; PFAM: Exosortase EpsH-related YP_004553426.1 KEGG: sjp:SJA_C1-15080 putative glycosyltransferase; TIGRFAM: Sugar transferase, PEP-CTERM, Stp1; PFAM: Glycosyl transferase, group 1 YP_004553427.1 TIGRFAM: PEP-CTERM system-associated, FemAB-related; KEGG: sjp:SJA_C1-15070 hypothetical protein YP_004553428.1 KEGG: sjp:SJA_C1-15060 putative polysaccharide deacetylase; TIGRFAM: PEP-CTERM locus, polysaccharide deactylase; PFAM: Polysaccharide deacetylase YP_004553429.1 KEGG: sjp:SJA_C1-15050 general secretion pathway protein A; TIGRFAM: ATPase, secretion system, PEP-CTERM, predicted; SMART: ATPase, AAA+ type, core YP_004553430.1 KEGG: sjp:SJA_C1-15040 hypothetical protein YP_004553431.1 KEGG: sjp:SJA_C1-15030 putative exopolysaccharide biosynthesis protein YP_004553432.1 KEGG: sjp:SJA_C1-15020 putative exopolysaccharide biosynthesis protein; TIGRFAM: PEP-CTERM locus polysaccharide chain length determinant; PFAM: Lipopolysaccharide biosynthesis YP_004553433.1 PFAM: Polysaccharide export protein; Soluble ligand binding domain; KEGG: sjp:SJA_C1-15010 polysaccharide export outer membrane protein YP_004553434.1 TIGRFAM: Pyridoxal-dependent decarboxylase, exosortase system type 1 associated; KEGG: sjp:SJA_C1-15000 diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2 YP_004553435.1 TIGRFAM: Acyl-CoA ligase (AMP-forming), exosortase system type 1 associated; KEGG: sjp:SJA_C1-14990 enterobactin synthetase component F; PFAM: AMP-dependent synthetase/ligase; FUN14 YP_004553436.1 KEGG: sjp:SJA_C1-14980 CelD-like protein YP_004553437.1 KEGG: sjp:SJA_C1-14970 hypothetical protein YP_004553438.1 SMART: NAD-dependent DNA ligase, N-terminal; BRCT; TIGRFAM: NAD-dependent DNA ligase; KEGG: sjp:SJA_C1-16330 NAD-dependent DNA ligase; HAMAP: DNA ligase; PFAM: NAD-dependent DNA ligase, adenylation; NAD-dependent DNA ligase, OB-fold; Zinc-finger, NAD-dependent DNA ligase C4-type; BRCT YP_004553439.1 KEGG: sjp:SJA_C1-16290 DNA repair protein RecN; TIGRFAM: DNA recombination/repair protein RecN; PFAM: RecF/RecN/SMC protein, N-terminal YP_004553440.1 TIGRFAM: Outer membrane assembly lipoprotein YfiO; KEGG: sjp:SJA_C1-16280 putative lipoprotein YP_004553441.1 KEGG: sjp:SJA_C1-16270 putative signal transduction histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 2, dimerisation and phosphoacceptor region; SMART: ATP-binding region, ATPase-like YP_004553442.1 PFAM: Exoribonuclease, phosphorolytic domain 1; Exoribonuclease, phosphorolytic domain 2; Polynucleotide phosphorylase, phosphorolytic RNA-binding, bacterial/organelle-type; K Homology, type 1, subgroup; Ribosomal protein S1, RNA binding domain; TIGRFAM: Polyribonucleotide nucleotidyltransferase; HAMAP: Polyribonucleotide nucleotidyltransferase; KEGG: sjp:SJA_C1-16260 polyribonucleotide nucleotidyltransferase YP_004553443.1 KEGG: sjp:SJA_C1-16250 ribosomal protein S15; TIGRFAM: Ribosomal protein S15, bacterial-type; PFAM: Ribosomal protein S15 YP_004553444.1 TIGRFAM: Pseudouridine synthase II, TruB, N-terminal, bacterial-type; HAMAP: tRNA pseudouridine synthase B; KEGG: sjp:SJA_C1-16240 tRNA pseudouridine synthase B; PFAM: Pseudouridine synthase II, TruB, N-terminal YP_004553445.1 HAMAP: Thymidine kinase, subgroup; KEGG: sjp:SJA_C1-16230 thymidine kinase; PFAM: Thymidine kinase YP_004553446.1 PFAM: Alpha/beta hydrolase fold-1; KEGG: sjp:SJA_C1-16220 putative alpha/beta hydrolase YP_004553447.1 TIGRFAM: Ribosome-binding factor A; HAMAP: Ribosome-binding factor A; KEGG: sjp:SJA_C1-16210 ribosome-binding factor A; PFAM: Ribosome-binding factor A YP_004553448.1 KEGG: sjp:SJA_C1-16200 translation initiation factor IF-2; TIGRFAM: Initiation factor 2; Small GTP-binding protein; PFAM: Protein synthesis factor, GTP-binding; Translation initiation factor IF-2, N-terminal; Initiation factor 2 associated region, bacterial; Translation elongation factor EFTu/EF1A, domain 2 YP_004553449.1 PFAM: Protein of unknown function DUF448; KEGG: sjp:SJA_C1-16190 putative nucleic-acid-binding protein YP_004553450.1 KEGG: sjp:SJA_C1-16180 hypothetical protein; TIGRFAM: 4-oxalocrotonate tautomerase, subgroup; PFAM: 4-oxalocrotonate tautomerase YP_004553451.1 KEGG: sjp:SJA_C1-16170 N utilization substance protein A; TIGRFAM: Transcription termination factor NusA; Transcription termination factor NusA, C-terminal duplication; PFAM: Transcription factor NusA, N-terminal; Ribosomal protein S1, RNA binding domain YP_004553452.1 KEGG: sjp:SJA_C1-16160 hypothetical protein; HAMAP: Uncharacterised protein family UPF0090, bacteria; PFAM: Uncharacterised protein family UPF0090 YP_004553453.1 KEGG: sjp:SJA_C1-16150 putative glucose/sorbosone dehydrogenase YP_004553454.1 PFAM: CTP synthase, N-terminal; Glutamine amidotransferase class-I, C-terminal; TIGRFAM: CTP synthase; HAMAP: CTP synthase; KEGG: sjp:SJA_C1-16140 CTP synthase YP_004553455.1 KEGG: sjp:SJA_C1-16130 preprotein translocase subunit SecG; TIGRFAM: Preprotein translocase SecG subunit; PFAM: Preprotein translocase SecG subunit YP_004553456.1 TIGRFAM: Triosephosphate isomerase; KEGG: sjp:SJA_C1-16120 triosephosphate isomerase (TIM); PFAM: Triosephosphate isomerase YP_004553457.1 KEGG: sjp:SJA_C1-16110 peptidyl-prolyl cis-trans isomerase D YP_004553458.1 TIGRFAM: Anthranilate synthase component I; KEGG: sjp:SJA_C1-16100 anthranilate synthase component I; PFAM: Chorismate binding, C-terminal; Anthranilate synthase component I, N-terminal YP_004553459.1 TIGRFAM: Thioredoxin reductase; KEGG: sjp:SJA_C1-23390 NADPH-dependent thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_004553460.1 PFAM: Proteasome, subunit alpha/beta; KEGG: sjp:SJA_C1-23400 putative proteasome-type protease YP_004553461.1 KEGG: sjp:SJA_C1-23410 transglutaminase-like protein; PFAM: Transglutaminase-like; Bacterial transglutaminase-like, N-terminal; SMART: Transglutaminase-like YP_004553462.1 PFAM: Protein of unknown function DUF403, bacteria; KEGG: sjp:SJA_C1-23420 hypothetical protein YP_004553463.1 PFAM: Protein of unknown function DUF404, bacteria N-terminal; Protein of unknown function DUF407; KEGG: sjp:SJA_C1-23430 hypothetical protein YP_004553464.1 KEGG: sjp:SJA_C1-23450 type II secretory pathway prepilin signal peptidase PulO; PFAM: Peptidase A24A, prepilin type IV; Peptidase A24A, N-terminal YP_004553465.1 PFAM: Type II secretion system protein N; KEGG: sjp:SJA_C1-23460 type II secretory pathway component PulN YP_004553466.1 PFAM: General secretion pathway M protein; KEGG: sjp:SJA_C1-23470 type II secretory pathway component PulM YP_004553467.1 PFAM: General secretion pathway L; KEGG: sjp:SJA_C1-23480 type II secretory pathway component PulL YP_004553468.1 KEGG: sjp:SJA_C1-23490 type II secretory pathway component PulK YP_004553469.1 TIGRFAM: General secretion pathway protein J; Prepilin-type cleavage/methylation, N-terminal; KEGG: sjp:SJA_C1-23500 type II secretory pathway component PulJ YP_004553470.1 KEGG: sjp:SJA_C1-23510 type II secretory pathway component PulI; TIGRFAM: General secretion pathway protein I; Prepilin-type cleavage/methylation, N-terminal; PFAM: Type II secretion system protein I/J; Prepilin-type cleavage/methylation, N-terminal YP_004553471.1 TIGRFAM: General secretion pathway protein H; Prepilin-type cleavage/methylation, N-terminal; KEGG: sjp:SJA_C1-23520 type II secretory pathway component PulH YP_004553472.1 KEGG: sjp:SJA_C1-23530 type II secretory pathway pseudopilin PulG; TIGRFAM: General secretion pathway protein G; Prepilin-type cleavage/methylation, N-terminal; PFAM: Type II secretion system protein G; Prepilin-type cleavage/methylation, N-terminal YP_004553473.1 KEGG: sjp:SJA_C1-23540 type II secretory pathway component PulF; TIGRFAM: General secretion pathway protein F; PFAM: Type II secretion system F domain YP_004553474.1 TIGRFAM: Type II secretion system gspE; PFAM: Type II secretion system protein E; General secretory system II, protein E, N-terminal; KEGG: sjp:SJA_C1-23550 type II secretory pathway ATPase PulE; SMART: ATPase, AAA+ type, core YP_004553475.1 KEGG: sjp:SJA_C1-23560 type II secretory pathway component PulD; TIGRFAM: Type II secretion system gspD; PFAM: Type II/III secretion system; NolW-like YP_004553476.1 KEGG: sjp:SJA_C1-23570 type II secretory pathway component PulC YP_004553477.1 PFAM: Protein of unknown function DUF833; KEGG: sjp:SJA_C1-23620 hypothetical protein YP_004553478.1 KEGG: sjp:SJA_C1-23640 signal transduction histidine kinase; PFAM: ATP-binding region, ATPase-like; SMART: ATP-binding region, ATPase-like YP_004553479.1 KEGG: sjp:SJA_C1-23650 hypothetical protein YP_004553480.1 KEGG: sjp:SJA_C1-23660 hypothetical protein YP_004553481.1 KEGG: sjp:SJA_C1-23670 hypothetical protein YP_004553482.1 KEGG: sjp:SJA_C1-23680 hypothetical protein YP_004553483.1 KEGG: sjp:SJA_C1-23710 putative NUDIX hydrolase; manually curated; PFAM: NUDIX hydrolase domain YP_004553484.1 PFAM: Glycoside hydrolase, family 3, N-terminal; Glycoside hydrolase, family 3, C-terminal; KEGG: sjp:SJA_C2-02500 glucan 1,4-beta-glucosidase YP_004553485.1 KEGG: sjp:SJA_C2-02490 beta-glucosidase; PFAM: Glycoside hydrolase, family 3, N-terminal; Glycoside hydrolase, family 3, C-terminal YP_004553486.1 PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; KEGG: sjp:SJA_C2-02480 TonB-dependent receptor-like protein YP_004553487.1 PFAM: Major facilitator superfamily MFS-1; KEGG: sjp:SJA_C2-02470 glucose/galactose transporter YP_004553488.1 KEGG: sjp:SJA_C2-02460 LacI-family transcriptional regulator; PFAM: Periplasmic binding protein/LacI transcriptional regulator; HTH transcriptional regulator, LacI; SMART: HTH transcriptional regulator, LacI YP_004553489.1 PFAM: Outer membrane protein, OmpA/MotB, C-terminal; KEGG: sjp:SJA_C2-02780 OmpA-family protein YP_004553490.1 PFAM: Uncharacterised protein family UPF0324, prokaryote; KEGG: eli:ELI_09950 hypothetical protein YP_004553491.1 KEGG: swi:Swit_3259 hypothetical protein YP_004553492.1 KEGG: cak:Caul_0270 AsnC family transcriptional regulator; PFAM: Transcription regulator, AsnC-type, C-terminal; SMART: Transcription regulator, AsnC-type YP_004553493.1 KEGG: sjp:SJA_C1-23840 citrate lyase beta chain; PFAM: HpcH/HpaI aldolase YP_004553494.1 PFAM: MaoC-like dehydratase; KEGG: sjp:SJA_C1-23850 MaoC-like dehydratase YP_004553495.1 KEGG: sjp:SJA_C1-23860 methylcrotonyl-CoA carboxylase alpha subunit; PFAM: Carbamoyl phosphate synthetase, large subunit, ATP-binding; Carbamoyl phosphate synthase, large subunit, N-terminal; Biotin carboxylase, C-terminal; Biotin/lipoyl attachment YP_004553496.1 KEGG: sjp:SJA_C1-23870 propionyl-CoA carboxylase beta chain; PFAM: Carboxyl transferase YP_004553497.1 PFAM: Protein of unknown function DUF486; KEGG: sjp:SJA_C1-23880 hypothetical protein YP_004553498.1 KEGG: sjp:SJA_C1-23890 isovaleryl-CoA dehydrogenase; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, central region YP_004553499.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: sjp:SJA_C1-23900 LysR-family transcriptional regulator YP_004553500.1 TIGRFAM: Queuosine biosynthesis protein; HAMAP: S-adenosylmethionine:tRNA ribosyltransferase-isomerase; KEGG: sjp:SJA_C1-33400 S-adenosylmethionine:tRNA ribosyltransferase-isomerase; PFAM: Queuosine biosynthesis protein YP_004553501.1 PFAM: Peptidyl-prolyl cis-trans isomerase, cyclophilin-type; KEGG: sjp:SJA_C1-33410 peptidyl-prolyl cis-trans isomerase B YP_004553502.1 PFAM: Cytidylyltransferase; TIGRFAM: Coenzyme A biosynthesis protein; Cytidyltransferase-related; HAMAP: Coenzyme A biosynthesis protein; KEGG: sjp:SJA_C1-33420 pantetheine-phosphate adenylyltransferase YP_004553503.1 KEGG: sjp:SJA_C1-33430 geranyltranstransferase; PFAM: Polyprenyl synthetase YP_004553504.1 PFAM: Exonuclease VII, small subunit; manually curated; KEGG: sjp:SJA_C1-33440 exonuclease VII small subunit; TIGRFAM: Exonuclease VII, small subunit; HAMAP: Exonuclease VII, small subunit YP_004553505.1 KEGG: sjp:SJA_C1-33450 hypothetical protein YP_004553506.1 PFAM: AIR synthase related protein, C-terminal; AIR synthase related protein; TIGRFAM: Phosphoribosylformylglycinamidine synthase II; HAMAP: Phosphoribosylformylglycinamidine synthase 2; KEGG: sjp:SJA_C1-33460 phosphoribosylformylglycinamidine synthase YP_004553507.1 PFAM: ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type; TIGRFAM: Phosphoribosylglycinamide formyltransferase 2; HAMAP: Phosphoribosylglycinamide formyltransferase 2; KEGG: rce:RC1_4071 phosphoribosylglycinamide formyltransferase 2 YP_004553508.1 PFAM: Methyltransferase type 11; KEGG: sjp:SJA_C1-23910 biotin synthesis protein BioC YP_004553509.1 KEGG: sjp:SJA_C1-23920 hypothetical protein YP_004553510.1 PFAM: BFD-like [2Fe-2S]-binding region; KEGG: sjp:SJA_C1-23930 putative bacterioferritin-associated ferredoxin YP_004553511.1 KEGG: sjp:SJA_C1-23940 bacterioferritin; TIGRFAM: Bacterioferritin; PFAM: Ferritin/Dps protein YP_004553512.1 PFAM: NUDIX hydrolase domain; KEGG: sjp:SJA_C1-23950 CTP pyrophosphohydrolase YP_004553513.1 KEGG: sjp:SJA_C1-23960 putative pilin Flp; manually curated; PFAM: Flp/Fap pilin component YP_004553514.1 PFAM: Flp/Fap pilin component; KEGG: sjp:SJA_C1-23970 putative pilin Flp YP_004553515.1 PFAM: Peptidase M48, Ste24p; Peptidoglycan-binding lysin domain; KEGG: sjp:SJA_C1-23980 putative Zn-dependent protease YP_004553516.1 PFAM: Acetyl-CoA carboxylase, alpha subunit, conserved region; TIGRFAM: Acetyl-CoA carboxylase, alpha subunit; HAMAP: Acetyl-CoA carboxylase, alpha subunit; KEGG: sjp:SJA_C1-23990 acetyl-CoA carboxylase carboxyl transferase subunit alpha YP_004553517.1 KEGG: sjp:SJA_C1-24000 integrase/recombinase XerD; HAMAP: Tyrosine recombinase xerC; PFAM: Integrase, catalytic core, phage; Integrase, N-terminal SAM-like, phage YP_004553518.1 KEGG: sjp:SJA_C1-24010 hypothetical protein YP_004553519.1 KEGG: sjp:SJA_C1-24020 hypothetical protein YP_004553520.1 HAMAP: Shikimate kinase; KEGG: sjp:SJA_C1-24030 shikimate kinase; PFAM: Shikimate kinase YP_004553521.1 PFAM: 3-dehydroquinate synthase AroB; TIGRFAM: 3-dehydroquinate synthase AroB, subgroup; HAMAP: 3-dehydroquinate synthase; KEGG: sjp:SJA_C1-24040 3-dehydroquinate synthase YP_004553522.1 TIGRFAM: Ribosomal protein L31; HAMAP: 50S ribosomal protein L31; KEGG: sjp:SJA_C1-24050 ribosomal protein L31; PFAM: Ribosomal protein L31 YP_004553523.1 TIGRFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ; HAMAP: (3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase; KEGG: sjp:SJA_C1-24060 3R-hydroxymyristoyl ACP dehydrase; PFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ YP_004553524.1 PFAM: Outer membrane chaperone Skp (OmpH); KEGG: sjp:SJA_C1-24070 outer membrane protein OmpH YP_004553525.1 KEGG: sjp:SJA_C1-24080 outer membrane protein YaeT; TIGRFAM: Outer membrane assembly protein, YaeT; PFAM: Bacterial surface antigen (D15); Surface antigen variable number YP_004553526.1 TIGRFAM: Peptidase M50, putative membrane-associated zinc metallopeptidase; PFAM: Peptidase M50; PDZ/DHR/GLGF; KEGG: sjp:SJA_C1-24090 putative metallopeptidase; SMART: PDZ/DHR/GLGF YP_004553527.1 PFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase, C-terminal; 1-deoxy-D-xylulose 5-phosphate reductoisomerase, N-terminal; TIGRFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; HAMAP: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; KEGG: sjp:SJA_C1-24100 1-deoxy-D-xylulose-5-phosphate reductoisomerase YP_004553528.1 PFAM: Phosphatidate cytidylyltransferase; KEGG: sjp:SJA_C1-24110 phosphatidate cytidylyltransferase YP_004553529.1 PFAM: Di-trans-poly-cis-decaprenylcistransferase-like; TIGRFAM: Di-trans-poly-cis-decaprenylcistransferase-like; HAMAP: Undecaprenyl pyrophosphate synthase; KEGG: sjp:SJA_C1-24120 undecaprenyl pyrophosphate synthetase YP_004553530.1 TIGRFAM: Ribosome recycling factor; HAMAP: Ribosome recycling factor, bacterial-like; KEGG: sjp:SJA_C1-24130 ribosome recycling factor RF-4; PFAM: Ribosome recycling factor YP_004553531.1 KEGG: sjp:SJA_C1-24140 uridylate kinase; TIGRFAM: Uridylate kinase, bacteria; PFAM: Aspartate/glutamate/uridylate kinase YP_004553532.1 TIGRFAM: Translation elongation factor EFTs/EF1B; HAMAP: Elongation factor Ts; KEGG: sjp:SJA_C1-24150 translation elongation factor EF-Ts; PFAM: Translation elongation factor EFTs/EF1B, dimerisation; Ubiquitin-associated/translation elongation factor EF1B, N-terminal YP_004553533.1 KEGG: sjp:SJA_C1-24160 ribosomal protein S2; TIGRFAM: Ribosomal protein S2, bacteria/mitochondria/plastid; PFAM: Ribosomal protein S2 YP_004553534.1 KEGG: sjp:SJA_C1-24170 hypothetical protein YP_004553535.1 PFAM: CDP-alcohol phosphatidyltransferase; KEGG: sjp:SJA_C1-24180 phosphatidylserine synthase YP_004553536.1 PFAM: Phosphatidylserine decarboxylase-related; TIGRFAM: Phosphatidylserine decarboxylase-related protein; HAMAP: Phosphatidylserine decarboxylase proenzyme; KEGG: sjp:SJA_C1-24190 phosphatidylserine decarboxylase YP_004553537.1 KEGG: sjp:SJA_C1-24210 isocitrate dehydrogenase; TIGRFAM: Isocitrate dehydrogenase NADP-dependent, eukaryotic; PFAM: Isocitrate/isopropylmalate dehydrogenase YP_004553538.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; GCN5-related N-acetyltransferase; KEGG: sjp:SJA_C1-24220 putative amidohydrolase YP_004553539.1 PFAM: Glutamine amidotransferase, class-II; Sugar isomerase (SIS); TIGRFAM: Glucosamine-fructose-6-phosphate aminotransferase, isomerising; HAMAP: Glucosamine--fructose-6-phosphate aminotransferase [isomerizing]; KEGG: sjp:SJA_C1-24230 glucosamine-fructose-6-phosphate aminotransferase (isomerizing) YP_004553540.1 PFAM: Metallophosphoesterase; KEGG: sjp:SJA_C1-24240 putative phosphohydrolase YP_004553541.1 PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; Bacterial transferase hexapeptide repeat; TIGRFAM: Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase; HAMAP: Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase; KEGG: sjp:SJA_C1-24250 UDP-N-acetylglucosamine pyrophosphorylase YP_004553542.1 TIGRFAM: 2-phosphoglycolate phosphatase, prokaryotic; HAD-superfamily hydrolase, subfamily IA, variant 1; HAD-superfamily hydrolase, subfamily IA, variant 3; KEGG: sjp:SJA_C1-24260 phosphoglycolate phosphatase; PFAM: Haloacid dehalogenase-like hydrolase YP_004553543.1 KEGG: sjp:SJA_C1-24270 enoyl-CoA hydratase; PFAM: Crotonase, core YP_004553544.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate cyclase, predicted; KEGG: sjp:SJA_C1-24280 putative diguanylate cyclase; SMART: Diguanylate cyclase, predicted YP_004553545.1 TIGRFAM: Dihydrolipoamide dehydrogenase; KEGG: sjp:SJA_C1-24290 dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation YP_004553546.1 TIGRFAM: Dihydrolipoamide succinyltransferase; KEGG: sjp:SJA_C1-24310 2-oxoglutarate dehydrogenase E2 component; PFAM: 2-oxoacid dehydrogenase acyltransferase, catalytic domain; Biotin/lipoyl attachment; E3 binding YP_004553547.1 TIGRFAM: 2-oxoglutarate dehydrogenase, E1 component; KEGG: sjp:SJA_C1-24320 2-oxoglutarate dehydrogenase E1 component; PFAM: Transketolase-like, pyrimidine-binding domain; Dehydrogenase, E1 component YP_004553548.1 TIGRFAM: Succinyl-CoA ligase, alpha subunit; KEGG: sjp:SJA_C1-24330 succinyl-CoA synthetase alpha chain; PFAM: ATP-citrate lyase/succinyl-CoA ligase; CoA-binding YP_004553549.1 TIGRFAM: Malate dehydrogenase, NAD-dependent; HAMAP: Malate dehydrogenase, NAD-dependent; KEGG: sjp:SJA_C1-24340 malate dehydrogenase; PFAM: Lactate/malate dehydrogenase YP_004553550.1 PFAM: ATPase, AFG1-like; KEGG: sjp:SJA_C1-24350 putative ATPase YP_004553551.1 PFAM: Thioesterase superfamily; KEGG: sjp:SJA_C1-24360 hypothetical protein YP_004553552.1 TIGRFAM: Succinate dehydrogenase/fumarate reductase iron-sulphur protein; KEGG: sjp:SJA_C1-24370 succinate dehydrogenase iron-sulfur protein; PFAM: Ferredoxin YP_004553553.1 KEGG: sal:Sala_2237 hypothetical protein YP_004553554.1 KEGG: sal:Sala_2238 hypothetical protein YP_004553555.1 PFAM: Histidine triad (HIT) protein; KEGG: sjp:SJA_C1-24400 Hit-family hydrolase YP_004553556.1 PFAM: Nucleotidyl transferase; KEGG: sjp:SJA_C1-24410 putative sugar nucleotidyltransferase YP_004553557.1 PFAM: Polysaccharide biosynthesis protein; KEGG: sjp:SJA_C1-24420 hypothetical protein YP_004553558.1 PFAM: FAD dependent oxidoreductase; KEGG: sjp:SJA_C1-24430 putative oxidoreductase YP_004553559.1 PFAM: Alpha/beta hydrolase fold-1; KEGG: sjp:SJA_C1-24440 lysophospholipase YP_004553560.1 PFAM: Peptidase A24A, prepilin type IV; KEGG: sjp:SJA_C1-24450 Flp pilus assembly protein protease CpaA YP_004553561.1 KEGG: sjp:SJA_C1-24460 Flp pilus assembly protein CpaB; TIGRFAM: Pilus assembly, Flp-type CpaB; PFAM: SAF domain YP_004553562.1 PFAM: Type II/III secretion system; KEGG: sjp:SJA_C1-24470 Flp pilus assembly protein secretin CpaC YP_004553563.1 PFAM: Pilus biogenesis CpaD-related; KEGG: sjp:SJA_C1-24480 Flp pilus assembly protein CpaD YP_004553564.1 KEGG: sjp:SJA_C1-24490 Flp pilus assembly protein ATPase CpaE YP_004553565.1 PFAM: Type II secretion system F domain; KEGG: sjp:SJA_C1-24500 Flp pilus assembly protein TadB YP_004553566.1 PFAM: Type II secretion system F domain; KEGG: sjp:SJA_C1-24510 Flp pilus assembly protein TadC YP_004553567.1 PFAM: Protein of unknown function DUF2147; KEGG: sjp:SJA_C1-24520 hypothetical protein YP_004553568.1 PFAM: Asparaginase/glutaminase; KEGG: sjp:SJA_C1-25670 L-asparaginase YP_004553569.1 TIGRFAM: Delta 1-pyrroline-5-carboxylate reductase; KEGG: sjp:SJA_C1-25680 pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase, coenzyme F420-dependent YP_004553570.1 PFAM: Protein of unknown function DUF1790; KEGG: sjp:SJA_C1-25690 hypothetical protein YP_004553571.1 PFAM: Protein of unknown function DUF526; KEGG: sjp:SJA_C1-25700 hypothetical protein YP_004553572.1 PFAM: TspO/MBR-related protein; KEGG: sjp:SJA_C1-25710 benzodiazepine receptor YP_004553573.1 PFAM: Acriflavin resistance protein; KEGG: sjp:SJA_C1-25720 RND-family efflux transporter YP_004553574.1 KEGG: sjp:SJA_C1-25730 HlyD-family secretion protein; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD YP_004553575.1 TIGRFAM: Haemolysin A; PFAM: Ribosomal RNA methyltransferase RrmJ/FtsJ; RNA-binding S4; KEGG: sjp:SJA_C1-25740 putative hemolysin A; SMART: RNA-binding S4 YP_004553576.1 KEGG: sjp:SJA_C1-25750 thiol:disulfide interchange protein YP_004553577.1 PFAM: Type I phosphodiesterase/nucleotide pyrophosphatase/phosphate transferase; KEGG: sjp:SJA_C1-25760 putative alkaline phosphatase YP_004553578.1 KEGG: sjp:SJA_C1-25770 serine O-acetyltransferase YP_004553579.1 KEGG: sjp:SJA_C1-25780 two-component system osmolarity sensor histidine kinase EnvZ; PFAM: ATP-binding region, ATPase-like; HAMP linker domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SMART: ATP-binding region, ATPase-like; HAMP linker domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region YP_004553580.1 KEGG: sjp:SJA_C1-25790 two-component system response regulator OmpR; PFAM: Signal transduction response regulator, receiver region; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver region YP_004553581.1 KEGG: sjp:SJA_C1-25800 hypothetical protein; TIGRFAM: Conserved hypothetical protein CHP02001; PFAM: Conserved hypothetical protein CHP02001 YP_004553582.1 PFAM: Sulphate transporter; KEGG: sjp:SJA_C1-25810 putative sulphate transporter YP_004553583.1 KEGG: sjp:SJA_C1-25820 carbonic anhydrase; PFAM: Carbonic anhydrase YP_004553584.1 KEGG: sjp:SJA_C1-25830 OmpR-family two-component system response regulator; PFAM: Signal transduction response regulator, receiver region; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver region YP_004553585.1 KEGG: sjp:SJA_C1-25840 hypothetical protein YP_004553586.1 PFAM: Glycosyl transferase, group 1; KEGG: sjp:SJA_C1-25860 putative glycosyltransferase YP_004553587.1 PFAM: Amylo-alpha-1,6-glucosidase; KEGG: sjp:SJA_C1-25870 amylo-alpha-1,6-glucosidase YP_004553588.1 KEGG: sjp:SJA_C1-25880 SDR-family protein; PFAM: Short-chain dehydrogenase/reductase SDR YP_004553589.1 PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: swi:Swit_2950 TonB-dependent receptor, plug YP_004553590.1 PFAM: Adenylate cyclase; KEGG: mrd:Mrad2831_2493 adenylate cyclase YP_004553591.1 PFAM: YCII-related; KEGG: ara:Arad_0494 hypothetical protein YP_004553592.1 PFAM: Protein of unknown function DUF6, transmembrane; KEGG: sjp:SJA_C1-27660 putative permease YP_004553593.1 KEGG: sjp:SJA_C1-27670 chorismate mutase; TIGRFAM: Chorismate mutase, bacteria; PFAM: Chorismate mutase, type II YP_004553594.1 KEGG: sjp:SJA_C1-27680 octaprenyl-diphosphate synthase; PFAM: Polyprenyl synthetase YP_004553595.1 PFAM: Protein of unknown function DUF81; KEGG: sjp:SJA_C1-27690 putative permease YP_004553596.1 TIGRFAM: RNA helicase, ATP-dependent DEAH box, HrpB type; PFAM: RNA helicase, ATP-dependent, HrpB type, C-terminal; Helicase-associated region; DNA/RNA helicase, C-terminal; DNA/RNA helicase, DEAD/DEAH box type, N-terminal; KEGG: sjp:SJA_C1-27700 ATP-dependent helicase HrpB; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal YP_004553597.1 PFAM: ETC complex I subunit conserved region; KEGG: sjp:SJA_C1-27710 putative oxidoreductase YP_004553598.1 KEGG: sjp:SJA_C1-27720 hypothetical protein YP_004553599.1 PFAM: Phosphopantetheine-binding; KEGG: sjp:SJA_C1-27730 acyl carrier protein YP_004553600.1 KEGG: sjp:SJA_C1-27740 8-amino-7-oxononanoate synthase; PFAM: Aminotransferase, class I/II YP_004553601.1 KEGG: sjp:SJA_C1-27750 signal transduction histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; Signal transduction response regulator, receiver region; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; Signal transduction response regulator, receiver region YP_004553602.1 KEGG: sjp:SJA_C1-27760 hypothetical protein YP_004553603.1 KEGG: sjp:SJA_C1-27770 hypothetical protein YP_004553604.1 PFAM: Protein of unknown function DUF938; KEGG: sjp:SJA_C1-27780 hypothetical protein YP_004553605.1 PFAM: Aminotransferase, class V/Cysteine desulfurase; KEGG: sjp:SJA_C1-27790 glycine dehydrogenase subunit 2 YP_004553606.1 HAMAP: glycine dehydrogenase [decarboxylating] subunit 1; KEGG: sjp:SJA_C1-27800 glycine dehydrogenase subunit 1; PFAM: Glycine cleavage system P-protein, N-terminal YP_004553607.1 TIGRFAM: Glycine cleavage H-protein, subgroup; HAMAP: Glycine cleavage H-protein; KEGG: sjp:SJA_C1-27810 glycine cleavage system H protein; PFAM: Glycine cleavage H-protein YP_004553608.1 PFAM: Glycine cleavage T-protein, N-terminal; Glycine cleavage T-protein, C-terminal barrel; manually curated; TIGRFAM: Glycine cleavage system T protein; KEGG: sjp:SJA_C1-27820 aminomethyltransferase YP_004553609.1 SMART: Metal-dependent phosphohydrolase, HD region; TIGRFAM: Deoxyguanosinetriphosphate triphosphohydrolase; KEGG: sjp:SJA_C1-27830 dGTPase; HAMAP: Deoxyguanosinetriphosphate triphosphohydrolase-like protein; PFAM: Metal-dependent phosphohydrolase, HD region, subdomain YP_004553610.1 PFAM: Sporulation/cell division region, bacteria; KEGG: sjp:SJA_C1-27840 hypothetical protein YP_004553611.1 KEGG: sjp:SJA_C1-27850 cell division protein FtsZ; TIGRFAM: Cell division protein FtsZ, N-terminal; PFAM: Tubulin/FtsZ, GTPase domain; Tubulin/FtsZ, 2-layer sandwich domain YP_004553612.1 KEGG: sjp:SJA_C1-27860 cell division protein FtsA; TIGRFAM: Cell division protein family FtsA; PFAM: Cell division protein FtsA domain YP_004553613.1 PFAM: Cell division protein FtsQ; Polypeptide-transport-associated, FtsQ-type; KEGG: sjp:SJA_C1-27870 cell division protein FtsQ YP_004553614.1 PFAM: D-alanine--D-alanine ligase, C-terminal; D-alanine--D-alanine ligase, N-terminal; TIGRFAM: D-alanine--D-alanine ligase; HAMAP: D-alanine--D-alanine ligase; KEGG: sjp:SJA_C1-27880 D-alanine-D-alanine ligase YP_004553615.1 PFAM: UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal; FAD linked oxidase, N-terminal; TIGRFAM: UDP-N-acetylenolpyruvoylglucosamine reductase; HAMAP: UDP-N-acetylenolpyruvoylglucosamine reductase; KEGG: sjp:SJA_C1-27890 UDP-N-acetylmuramate dehydrogenase YP_004553616.1 KEGG: sjp:SJA_C1-27900 hypothetical protein YP_004553617.1 PFAM: Mur ligase, N-terminal; Mur ligase, central; Mur ligase, C-terminal; TIGRFAM: UDP-N-acetylmuramate-alanine ligase; HAMAP: UDP-N-acetylmuramate-alanine ligase; KEGG: sjp:SJA_C1-27910 UDP-N-acetylmuramate-alanine ligase YP_004553618.1 PFAM: Glycosyl transferase, family 28, C-terminal; Glycosyl transferase, family 28; TIGRFAM: N-acetylglucosaminyltransferase, MurG; HAMAP: UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; KEGG: sjp:SJA_C1-27930 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase YP_004553619.1 PFAM: Cell cycle protein; KEGG: sjp:SJA_C1-27940 cell division protein FtsW YP_004553620.1 PFAM: Mur ligase, central; Mur ligase, C-terminal; TIGRFAM: UDP-N-acetylmuramoylalanine-D-glutamate ligase; HAMAP: UDP-N-acetylmuramoylalanine-D-glutamate ligase; KEGG: sjp:SJA_C1-27950 UDP-N-acetylmuramoylalanine-D-glutamate ligase YP_004553621.1 TIGRFAM: Phospho-N-acetylmuramoyl-pentapeptide transferase; HAMAP: Phospho-N-acetylmuramoyl-pentapeptide transferase; KEGG: sjp:SJA_C1-27960 phospho-N-acetylmuramoyl-pentapeptide-transferase; PFAM: Glycosyl transferase, family 4, conserved region; Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site YP_004553622.1 TIGRFAM: UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase; KEGG: sjp:SJA_C1-27970 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl- D-alanine ligase; PFAM: Mur ligase, central; Mur ligase, N-terminal; Mur ligase, C-terminal YP_004553623.1 PFAM: Mur ligase, central; Mur ligase, N-terminal; Mur ligase, C-terminal; TIGRFAM: UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase; HAMAP: UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase; KEGG: sjp:SJA_C1-27980 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase YP_004553624.1 KEGG: sjp:SJA_C1-27990 cell division protein FtsI; PFAM: Penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain YP_004553625.1 KEGG: sjp:SJA_C1-28000 hypothetical protein YP_004553626.1 TIGRFAM: S-adenosyl-L-methionine-dependent methyltransferase, MraW; HAMAP: S-adenosyl-L-methionine-dependent methyltransferase, MraW; KEGG: sjp:SJA_C1-28010 S-adenosyl-methyltransferase; PFAM: S-adenosyl-L-methionine-dependent methyltransferase, MraW YP_004553627.1 KEGG: sjp:SJA_C1-28020 putative MraZ protein YP_004553628.1 KEGG: sjp:SJA_C1-28030 hypothetical protein YP_004553629.1 KEGG: sjp:SJA_C1-28040 hypothetical protein YP_004553630.1 KEGG: sjp:SJA_C1-28050 cysteine synthase; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit YP_004553631.1 PFAM: Cell wall hydrolase, SleB; KEGG: sjp:SJA_C1-28060 SleB-like protein YP_004553632.1 PFAM: Entericidin EcnAB; KEGG: sjp:SJA_C1-28070 hypothetical protein YP_004553633.1 KEGG: sjp:SJA_C1-28080 sec-independent protein translocase protein TatC; TIGRFAM: Twin arginine-targeting protein translocase, TatC; PFAM: Sec-independent periplasmic protein translocase YP_004553634.1 TIGRFAM: Twin-arginine translocation protein TatB; KEGG: sjp:SJA_C1-28090 sec-independent protein secretion pathway component TatB YP_004553635.1 TIGRFAM: Twin-arginine translocation protein TatA/E; HAMAP: Twin-arginine translocation protein TatA/E; KEGG: sjp:SJA_C1-28100 sec-independent protein secretion pathway component TatA; PFAM: Bacterial sec-independent translocation protein mttA/Hcf106 YP_004553636.1 KEGG: sjp:SJA_C1-28110 segregation and condensation protein B; TIGRFAM: Chromosome segregation/condensation protein ScpB, prokaryote; PFAM: Chromosome segregation/condensation protein ScpB, prokaryote YP_004553637.1 PFAM: Prokaryotic chromosome segregation/condensation protein ScpA; KEGG: sjp:SJA_C1-28120 segregation and condensation protein A YP_004553638.1 KEGG: sjp:SJA_C1-28130 beta-N-acetylhexosaminidase; PFAM: Glycoside hydrolase, family 3, N-terminal YP_004553639.1 PFAM: Sporulation/cell division region, bacteria; KEGG: sjp:SJA_C1-28140 hypothetical protein YP_004553640.1 TIGRFAM: Arginyl-tRNA synthetase, class Ic; HAMAP: Arginyl-tRNA synthetase, class Ic; KEGG: sjp:SJA_C1-28150 arginyl-tRNA synthetase YP_004553641.1 KEGG: sjp:SJA_C1-28160 hypothetical protein YP_004553642.1 PFAM: LytB protein; TIGRFAM: LytB protein; HAMAP: LytB protein; KEGG: sjp:SJA_C1-28170 4-hydroxy-3-methylbut-2-enyl diphosphate reductase YP_004553643.1 PFAM: Aminoglycoside phosphotransferase; TIGRFAM: Homoserine kinase ThrB; HAMAP: Homoserine kinase; KEGG: sjp:SJA_C1-28180 homoserine kinase type II YP_004553644.1 KEGG: sjp:SJA_C1-28190 ribonuclease HI; HAMAP: Ribonuclease H; PFAM: Ribonuclease H YP_004553645.1 TIGRFAM: Dihydropteroate synthase; KEGG: sjp:SJA_C1-27270 dihydropteroate synthase; PFAM: Dihydropteroate synthase, DHPS YP_004553646.1 PFAM: DNA methylase N-4/N-6; KEGG: sjp:SJA_C1-27280 putative adenine-specific DNA-methyltransferase YP_004553648.1 KEGG: sjp:SJA_C1-27290 ArsR-family transcriptional regulator; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR YP_004553649.1 KEGG: sjp:SJA_C1-27300 hypothetical protein YP_004553650.1 PFAM: Peptidase M23; KEGG: sjp:SJA_C1-27310 putative metalloendopeptidase YP_004553651.1 KEGG: sjp:SJA_C1-27320 putative helicase; PFAM: DNA/RNA helicase, C-terminal; SMART: DNA/RNA helicase, C-terminal YP_004553652.1 KEGG: sjp:SJA_C1-27330 putative RNA-binding protein S4; PFAM: RNA-binding S4; SMART: RNA-binding S4 YP_004553653.1 PFAM: 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; KEGG: sjp:SJA_C1-27340 ferredoxin YP_004553654.1 PFAM: Transcription factor CarD; KEGG: sjp:SJA_C1-27350 CarD-family transcriptional regulator YP_004553655.1 KEGG: sjp:SJA_C1-27370 hypothetical protein YP_004553656.1 KEGG: sjp:SJA_C1-27380 hypothetical protein YP_004553657.1 PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: sjp:SJA_C1-27390 TetR-family transcriptional regulator YP_004553658.1 TIGRFAM: Peroxiredoxin; KEGG: sjp:SJA_C1-27400 peroxiredoxin; PFAM: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Peroxiredoxin, C-terminal YP_004553659.1 TIGRFAM: Alkyl hydroperoxide reductase, subunit F; KEGG: sjp:SJA_C1-27410 alkyl hydroperoxide reductase subunit F; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_004553660.1 PFAM: YkuD domain; KEGG: sjp:SJA_C1-27420 hypothetical protein YP_004553661.1 KEGG: sjp:SJA_C1-27430 ribonuclease HII; PFAM: Ribonuclease HII/HIII YP_004553662.1 TIGRFAM: Phosphomethylpyrimidine kinase type-2; KEGG: sjp:SJA_C1-27440 putative kinase; PFAM: Phosphomethylpyrimidine kinase type-1 YP_004553663.1 PFAM: Protein of unknown function DUF1272; KEGG: sjp:SJA_C1-27450 hypothetical protein YP_004553664.1 TIGRFAM: Phosphoglucosamine mutase; KEGG: sjp:SJA_C1-27460 phosphoglucosamine mutase; PFAM: Alpha-D-phosphohexomutase, alpha/beta/alpha domain I; Alpha-D-phosphohexomutase, alpha/beta/alpha domain II; Alpha-D-phosphohexomutase, alpha/beta/alpha domain III; Alpha-D-phosphohexomutase, C-terminal YP_004553665.1 KEGG: sjp:SJA_C1-27470 putative Na+/alanine symporter; TIGRFAM: Sodium:alanine symporter; PFAM: Sodium:alanine symporter YP_004553666.1 PFAM: Peptidase M24, structural domain; Peptidase M24B, X-Pro dipeptidase/aminopeptidase P N-terminal; KEGG: sjp:SJA_C1-10530 Xaa-Pro aminopeptidase YP_004553667.1 PFAM: CsbD-like; KEGG: sjp:SJA_C1-10520 hypothetical protein YP_004553668.1 PFAM: DNA methylase N-4/N-6; ParB-like nuclease; KEGG: sjp:SJA_C1-26090 putative DNA modification methylase YP_004553669.1 KEGG: sno:Snov_4309 hypothetical protein YP_004553670.1 TIGRFAM: Phage uncharacterised protein, C-terminal; KEGG: mex:Mext_0804 phage uncharacterized protein YP_004553671.1 KEGG: sme:SMa0444 TRm1b transposase; manually curated; PFAM: Integrase, catalytic core YP_004553672.1 PFAM: Transposase IS3/IS911; KEGG: sme:SM_b20918 transposase of insertion sequence ISRm1 orfA protein YP_004553673.1 KEGG: met:M446_6112 hypothetical protein YP_004553674.1 KEGG: bba:Bd1130 putative YapH protein YP_004553675.1 KEGG: bba:Bd1334 cell wall surface anchor family protein YP_004553676.1 KEGG: ccs:CCNA_02505 type IV secretory pathway VirB11 ATPase; TIGRFAM: ATPase, P-type DNA transfer, VirB11; PFAM: Type II secretion system protein E YP_004553677.1 PFAM: Bacterial conjugation TrbI-like protein; KEGG: ccs:CCNA_02504 type IV secretory pathway VirB10 channel protein YP_004553678.1 PFAM: Conjugal transfer, TrbG/VirB9/CagX; KEGG: eta:ETA_pET490130 TraH protein YP_004553679.1 PFAM: VirB8; KEGG: pzu:PHZ_p0013 VirB8 type IV secretion protein YP_004553680.1 PFAM: Conjugal transfer, TrbL/VirB6; KEGG: ccs:CCNA_02502 type IV secretory pathway VirB6 channel protein YP_004553681.1 KEGG: ccs:CCNA_02501 type IV secretory pathway VirB4 ATPase; TIGRFAM: CagE, TrbE, VirB component of type IV transporter system; PFAM: CagE, TrbE, VirB component of type IV transporter system, conserved region YP_004553682.1 PFAM: Type IV secretory pathway, VirB3-like; KEGG: aex:Astex_1334 type IV secretory pathway VirB3 family protein YP_004553683.1 PFAM: Conjugal transfer,TrbC; KEGG: aex:Astex_1335 conjugal transfer protein TrbC YP_004553684.1 KEGG: ccs:CCNA_02499 type IV secretory pathway VirB2 protein; manually curated; PFAM: Conjugal transfer,TrbC YP_004553685.1 manually curated YP_004553686.1 KEGG: met:M446_2453 YD repeat-containing protein; TIGRFAM: RHS repeat-associated core domain; YD repeat; PFAM: YD repeat YP_004553687.1 KEGG: gur:Gura_1137 hypothetical protein YP_004553688.1 KEGG: aex:Astex_3540 hypothetical protein YP_004553689.1 PFAM: Protein of unknown function DUF2269, transmembrane; KEGG: rfe:RF_0220 hypothetical protein YP_004553690.1 PFAM: Saccharopine dehydrogenase; KEGG: sde:Sde_1424 potassium efflux system protein YP_004553691.1 PFAM: Putative thiol-disulphide oxidoreductase DCC; KEGG: ret:RHE_CH01012 hypothetical protein YP_004553692.1 manually curated; PFAM: Protein of unknown function DUF955; Helix-turn-helix type 3; KEGG: rlt:Rleg2_3866 protein of unknown function DUF955; SMART: Helix-turn-helix type 3 YP_004553693.1 KEGG: rlt:Rleg2_3865 hypothetical protein YP_004553694.1 KEGG: swi:Swit_0159 hypothetical protein YP_004553695.1 SMART: Helicase, ATP-dependent, c2 type; DEAD-like helicase, N-terminal; KEGG: cyc:PCC7424_2436 DEAD-like helicase YP_004553696.1 PFAM: Stem cell self-renewal protein Piwi; KEGG: sfu:Sfum_2483 piwi domain-containing protein YP_004553697.1 KEGG: pth:PTH_0722 hypothetical protein YP_004553698.1 KEGG: sjp:SJA_C1-26400 hypothetical protein YP_004553699.1 KEGG: sjp:SJA_C1-26410 putative bacteriophage-related protein YP_004553700.1 PFAM: Resolvase, N-terminal; Recombinase; KEGG: sjp:SJA_C1-26420 invertase/recombinase like protein YP_004553701.1 PFAM: Protein of unknown function DUF1178; KEGG: sjp:SJA_C1-26430 hypothetical protein YP_004553702.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: sjp:SJA_C1-26440 putative amidohydrolase YP_004553703.1 KEGG: sjp:SJA_C1-26450 glutaredoxin 3; TIGRFAM: Glutaredoxin, GrxC; PFAM: Glutaredoxin YP_004553704.1 PFAM: Phosphoribosyltransferase; KEGG: sjp:SJA_C1-26460 putative amidophosphoribosyltransferase YP_004553705.1 PFAM: Methyltransferase type 11; KEGG: sjp:SJA_C1-26470 SAM-dependent methyltransferase YP_004553706.1 KEGG: sjp:SJA_C1-26600 putative sphingosine kinase; PFAM: Diacylglycerol kinase, catalytic region; SMART: Diacylglycerol kinase, catalytic region YP_004553707.1 PFAM: Protein of unknown function DUF2141; KEGG: sjp:SJA_C1-26610 hypothetical protein YP_004553708.1 PFAM: Permease YjgP/YjgQ, predicted; KEGG: sjp:SJA_C1-26620 putative permease YP_004553709.1 PFAM: Permease YjgP/YjgQ, predicted; KEGG: sjp:SJA_C1-26630 putative permease YP_004553710.1 PFAM: Fatty acid desaturase, type 1; KEGG: sjp:SJA_C1-26640 putative fatty acid desaturase YP_004553711.1 KEGG: sjp:SJA_C1-26650 hypothetical protein YP_004553712.1 KEGG: sjp:SJA_C1-26660 putative diacylglycerol kinase; PFAM: Diacylglycerol kinase, catalytic region; SMART: Diacylglycerol kinase, catalytic region YP_004553713.1 PFAM: Metallophosphoesterase; KEGG: sjp:SJA_C1-26670 putative phosphohydrolase YP_004553714.1 TIGRFAM: Exodeoxyribonuclease III xth; AP endonuclease, family 1; KEGG: sjp:SJA_C1-26680 exodeoxyribonuclease III; PFAM: Endonuclease/exonuclease/phosphatase YP_004553715.1 KEGG: sjp:SJA_C1-26690 hypothetical protein; TIGRFAM: FeS cluster insertion; PFAM: FeS cluster biogenesis YP_004553716.1 PFAM: Peptidase M23; KEGG: sjp:SJA_C1-26700 putative metalloendopeptidase YP_004553717.1 PFAM: Protein of unknown function DUF455; KEGG: sjp:SJA_C1-26710 hypothetical protein YP_004553718.1 PFAM: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; KEGG: sjp:SJA_C1-26720 bacterioferritin comigratory protein YP_004553719.1 KEGG: sjp:SJA_C1-26730 glutamate-ammonia-ligase adenylyltransferase; PFAM: Glutamate-ammonia ligase adenylyltransferase; PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase YP_004553720.1 KEGG: sjp:SJA_C1-26740 hypothetical protein YP_004553721.1 PFAM: Protein of unknown function, zinc metallopeptidase putative; KEGG: sjp:SJA_C1-24610 putative metalloprotease YP_004553722.1 PFAM: Patatin; KEGG: sjp:SJA_C1-24620 putative alpha/beta hydrolase YP_004553723.1 TIGRFAM: 3-hydroxybutyrate dehydrogenase; KEGG: sjp:SJA_C1-24630 3-hydroxybutyrate dehydrogenase; PFAM: Short-chain dehydrogenase/reductase SDR YP_004553724.1 KEGG: sjp:SJA_C1-24640 hypothetical protein YP_004553725.1 TIGRFAM: Peptidase M20D, amidohydrolase; KEGG: sjp:SJA_C1-24650 amidohydrolase-family protein; PFAM: Peptidase M20; Peptidase M20, dimerisation YP_004553726.1 KEGG: sjp:SJA_C1-28800 hypothetical protein YP_004553727.1 KEGG: sjp:SJA_C1-28810 hypothetical protein YP_004553728.1 KEGG: sjp:SJA_C1-28820 hypothetical protein YP_004553729.1 KEGG: sjp:SJA_C1-28840 hypothetical protein YP_004553730.1 KEGG: sjp:SJA_C1-28850 two-component system phosphate regulon sensor histidine kinase PhoR; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region YP_004553731.1 KEGG: sjp:SJA_C1-28860 phosphate transport system substrate-binding protein YP_004553732.1 KEGG: sjp:SJA_C1-28870 phosphate transport system permease protein; TIGRFAM: Phosphate ABC transporter, permease protein PstC; PFAM: Binding-protein-dependent transport systems inner membrane component YP_004553733.1 KEGG: sjp:SJA_C1-28880 phosphate transport system permease protein; TIGRFAM: Phosphate transport system permease protein 2; PFAM: Binding-protein-dependent transport systems inner membrane component YP_004553734.1 SMART: ATPase, AAA+ type, core; TIGRFAM: Phosphate transport system permease protein 1; KEGG: sjp:SJA_C1-28890 phosphate transport system ATP-binding protein; PFAM: ABC transporter-like YP_004553735.1 KEGG: sjp:SJA_C1-28900 phosphate transport system regulatory protein; TIGRFAM: PhoU; PFAM: PhoU YP_004553736.1 TIGRFAM: Signal transduction response regulator, phosphate regulon transcriptional regulatory protein phoB; PFAM: Signal transduction response regulator, receiver region; Signal transduction response regulator, C-terminal; KEGG: sjp:SJA_C1-28910 two-component system phosphate regulon response regulator PhoB; SMART: Signal transduction response regulator, receiver region YP_004553737.1 TIGRFAM: Formylmethionine deformylase; HAMAP: Formylmethionine deformylase; KEGG: sjp:SJA_C1-24530 N-formylmethionyl-tRNA deformylase; PFAM: Formylmethionine deformylase YP_004553738.1 TIGRFAM: RecR protein; HAMAP: Recombination protein recR; KEGG: sjp:SJA_C1-24540 recombination protein RecR; SMART: Toprim domain, subgroup YP_004553739.1 PFAM: Formyl transferase, N-terminal; Formyl transferase, C-terminal; TIGRFAM: Methionyl-tRNA formyltransferase; HAMAP: Methionyl-tRNA formyltransferase; KEGG: sjp:SJA_C1-24550 methionyl-tRNA formyltransferase YP_004553740.1 PFAM: Pseudouridine synthase I, TruA, alpha/beta domain; TIGRFAM: Pseudouridine synthase I, TruA; HAMAP: Pseudouridine synthase I, TruA; KEGG: sjp:SJA_C1-24560 tRNA pseudouridine synthase A YP_004553741.1 KEGG: sjp:SJA_C1-24570 hypothetical protein; TIGRFAM: Protein of unknown function DUF165; PFAM: Protein of unknown function DUF165 YP_004553742.1 KEGG: sjp:SJA_C2-05350 transcription factor jumonji JmjC; PFAM: Cupin 4; SMART: Transcription factor jumonji/aspartyl beta-hydroxylase YP_004553743.1 KEGG: sjp:SJA_C2-05360 ribosomal large subunit pseudouridine synthase E; TIGRFAM: Pseudouridine synthase, RsuA and RluB/E/F; PFAM: Pseudouridine synthase, RsuA and RluB/C/D/E/F YP_004553744.1 KEGG: sjp:SJA_C2-05330 hypothetical protein YP_004553745.1 KEGG: sjp:SJA_C2-05340 hypothetical protein YP_004553746.1 PFAM: Alcohol dehydrogenase GroES-like; KEGG: sjp:SJA_C1-08180 putative NADH oxidoreductase YP_004553747.1 PFAM: Peptide methionine sulphoxide reductase MsrA; TIGRFAM: Peptide methionine sulphoxide reductase MsrA; HAMAP: Peptide methionine sulphoxide reductase MsrA; KEGG: sjp:SJA_C1-08170 peptide-methionine (S)-S-oxide reductase YP_004553748.1 KEGG: sjp:SJA_C1-08160 hypothetical protein YP_004553750.1 KEGG: sjp:SJA_C1-08150 aspartate aminotransferase; PFAM: Aminotransferase, class I/II YP_004553751.1 PFAM: Aminotransferase, class IV; KEGG: sjp:SJA_C1-08140 para-aminobenzoate synthetase component I YP_004553752.1 TIGRFAM: Para-aminobenzoate synthase, component I; KEGG: sjp:SJA_C1-08130 para-aminobenzoate synthetase component I; PFAM: Chorismate binding, C-terminal YP_004553753.1 PFAM: Protein of unknown function DUF983; KEGG: sjp:SJA_C1-08120 hypothetical protein YP_004553754.1 PFAM: Thioesterase superfamily; KEGG: sjp:SJA_C1-08110 putative thioesterase YP_004553755.1 KEGG: sjp:SJA_C1-08090 cytochrome b561 YP_004553756.1 PFAM: Uncharacterised protein family UPF0118; KEGG: sjp:SJA_C1-08080 putative permease YP_004553757.1 KEGG: sjp:SJA_C1-08070 ATP-binding cassette protein; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core YP_004553758.1 KEGG: sjp:SJA_C1-08060 beta-glucosidase; PFAM: Glycoside hydrolase, family 3, N-terminal; Glycoside hydrolase, family 3, C-terminal YP_004553759.1 KEGG: sjp:SJA_C1-08050 RNA methyltransferase; TIGRFAM: RNA methyltransferase TrmH, group 3; PFAM: tRNA/rRNA methyltransferase, SpoU; RNA 2-O ribose methyltransferase, substrate binding YP_004553760.1 KEGG: sjp:SJA_C1-08040 hypothetical protein YP_004553761.1 PFAM: Ferredoxin; KEGG: sjp:SJA_C1-08030 ferredoxin YP_004553762.1 KEGG: sjp:SJA_C1-08020 DNA-3-methyladenine glycosylase II; PFAM: HhH-GPD domain; SMART: HhH-GPD domain YP_004553763.1 KEGG: sjp:SJA_C1-08010 hypothetical protein YP_004553764.1 KEGG: sjp:SJA_C1-08000 CheY-like response regulator; PFAM: Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region YP_004553765.1 TIGRFAM: PAS; PFAM: PAS fold-3; GAF; Signal transduction histidine kinase, HWE region; KEGG: sjp:SJA_C1-07990 putative sensor histidine kinase; SMART: PAC motif; GAF; PAS YP_004553766.1 PFAM: 3-phosphoshikimate 1-carboxyvinyltransferase, core; TIGRFAM: UDP-N-acetylglucosamine 1-carboxyvinyltransferase; HAMAP: UDP-N-acetylglucosamine 1-carboxyvinyltransferase; KEGG: sjp:SJA_C1-07980 UDP-N-acetylglucosamine 1-carboxyvinyltransferase YP_004553767.1 KEGG: sjp:SJA_C1-25070 putative oligopeptidase YP_004553768.1 PFAM: Protein of unknown function DUF2497; KEGG: sjp:SJA_C1-25080 hypothetical protein YP_004553769.1 manually curated; TIGRFAM: Type I secretion outer membrane protein, TolC; KEGG: sjp:SJA_C1-25090 TolC-like protein; PFAM: Outer membrane efflux protein YP_004553770.1 PFAM: Protein-L-isoaspartate(D-aspartate) O-methyltransferase; KEGG: sjp:SJA_C1-25100 protein-L-isoaspartate(D-aspartate) O-methyltransferase YP_004553771.1 PFAM: Protein of unknown function DUF81; KEGG: sjp:SJA_C1-25480 putative permease YP_004553772.1 PFAM: Glutathione S-transferase, N-terminal; KEGG: sjp:SJA_C1-25490 glutathione S-transferase YP_004553773.1 SMART: Nucleoside diphosphate kinase, core; HAMAP: Nucleoside diphosphate kinase; KEGG: sjp:SJA_C1-25500 nucleoside-diphosphate kinase; PFAM: Nucleoside diphosphate kinase, core YP_004553774.1 PFAM: DNA polymerase III chi subunit, HolC; KEGG: sjp:SJA_C1-25510 DNA polymerase III chi subunit YP_004553775.1 HAMAP: cytosol aminopeptidase; KEGG: sjp:SJA_C1-25520 leucyl aminopeptidase; PFAM: Peptidase M17, leucyl aminopeptidase, C-terminal; Peptidase M17, leucyl aminopeptidase, N-terminal YP_004553776.1 PFAM: Organic solvent tolerance protein; OstA-like protein; KEGG: sjp:SJA_C1-25530 organic solvent tolerance protein OstA YP_004553777.1 PFAM: Peptidyl-prolyl cis-trans isomerase, PpiC-type; SurA N-terminal; KEGG: sjp:SJA_C1-25540 peptidyl-prolyl cis-trans isomerase SurA YP_004553778.1 PFAM: Pyridoxal phosphate (active vitamin B6) biosynthesis PdxA; TIGRFAM: Pyridoxal phosphate (active vitamin B6) biosynthesis PdxA; HAMAP: Pyridoxal phosphate (active vitamin B6) biosynthesis PdxA; KEGG: sjp:SJA_C1-25550 4-hydroxythreonine-4-phosphate dehydrogenase YP_004553779.1 SMART: Ribosomal RNA adenine methylase transferase, N-terminal; TIGRFAM: Ribosomal RNA adenine dimethylase; KEGG: sjp:SJA_C1-25560 dimethyladenosine transferase; HAMAP: Ribosomal RNA adenine dimethylase; PFAM: Ribosomal RNA adenine methylase transferase YP_004553780.1 manually curated; KEGG: vap:Vapar_3259 hypothetical protein YP_004553781.1 KEGG: sjp:SJA_C1-25580 TPR repeat protein; PFAM: Tetratricopeptide TPR2; SMART: Tetratricopeptide repeat YP_004553782.1 PFAM: Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p; KEGG: sjp:SJA_C1-25590 tRNA/rRNA cytosine-C5-methylase YP_004553783.1 SMART: Cystathionine beta-synthase, core; TIGRFAM: IMP dehydrogenase; KEGG: sjp:SJA_C1-25600 IMP dehydrogenase; PFAM: IMP dehydrogenase/GMP reductase; Cystathionine beta-synthase, core YP_004553784.1 TIGRFAM: Translation initiation factor 3; HAMAP: Translation initiation factor IF-3; KEGG: sjp:SJA_C1-07910 translation initiation factor IF-3; PFAM: Translation initiation factor 3, C-terminal; Translation initiation factor 3, N-terminal YP_004553785.1 KEGG: sjp:SJA_C1-07900 threonyl-tRNA synthetase; TIGRFAM: Threonyl-tRNA synthetase, class IIa; PFAM: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved region; Threonyl/alanyl tRNA synthetase, SAD; TGS; Anticodon-binding YP_004553786.1 PFAM: Biopolymer transport protein ExbD/TolR; KEGG: sjp:SJA_C1-07890 biopolymer transport protein ExbD YP_004553787.1 KEGG: sjp:SJA_C1-35100 hypothetical protein YP_004553788.1 PFAM: UBA/THIF-type NAD/FAD binding fold; MoeZ/MoeB; KEGG: sjp:SJA_C1-35110 molybdopterin biosynthesis protein MoeB YP_004553789.1 PFAM: DeoxyUTP pyrophosphatase domain; TIGRFAM: DeoxyUTP pyrophosphatase domain, subfamily 1,; HAMAP: Deoxyuridine 5'-triphosphate nucleotidohydrolase; KEGG: sjp:SJA_C1-35120 dUTP pyrophosphatase YP_004553790.1 TIGRFAM: Bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; KEGG: sjp:SJA_C1-35130 putative phosphopantothenoylcysteine synthetase/decarboxylase; PFAM: DNA/pantothenate metabolism flavoprotein, C-terminal; Flavoprotein YP_004553791.1 SMART: ATPase, AAA+ type, core; TIGRFAM: Peptidase M41, FtsH; KEGG: sjp:SJA_C1-24660 cell division protease FtsH; PFAM: Peptidase M41; ATPase, AAA-type, core; Peptidase M41, FtsH extracellular YP_004553792.1 KEGG: sjp:SJA_C1-24670 hypothetical protein YP_004553793.1 TIGRFAM: Lysidine-tRNA(Ile) synthetase, N-terminal; HAMAP: tRNA(Ile)-lysidine synthase; KEGG: sjp:SJA_C1-24680 cell cycle protein MesJ; PFAM: PP-loop YP_004553794.1 KEGG: sjp:SJA_C1-24690 hypothetical protein YP_004553795.1 KEGG: sjp:SJA_C1-24700 hypothetical protein; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3 YP_004553796.1 SMART: GAF; TIGRFAM: Phosphoenolpyruvate-protein phosphotransferase; KEGG: sjp:SJA_C1-24710 phosphotransferase system enzyme I; PFAM: PEP-utilising enzyme; GAF; Phosphotransferase system, PEP-utilising enzyme, N-terminal; PEP-utilising enzyme, mobile region YP_004553797.1 KEGG: sjp:SJA_C1-24720 HisC-like protein; PFAM: Aminotransferase, class I/II YP_004553798.1 KEGG: sjp:SJA_C1-24730 HisC-like protein; PFAM: Aminotransferase, class I/II YP_004553799.1 PFAM: Activator of Hsp90 ATPase homologue 1-like; KEGG: sjp:SJA_C1-24740 hypothetical protein YP_004553800.1 PFAM: 3-demethylubiquinone-9 3-O-methyltransferase; KEGG: sjp:SJA_C1-24750 hypothetical protein YP_004553801.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sjp:SJA_C1-24760 putative hydroxylase YP_004553802.1 PFAM: Protein of unknown function DUF1428; KEGG: sjp:SJA_C1-24770 hypothetical protein YP_004553803.1 PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: sjp:SJA_C1-24780 SDR-family protein YP_004553804.1 PFAM: Helix-turn-helix, HxlR type; KEGG: sjp:SJA_C1-24790 HxlR-family transcriptional regulator YP_004553805.1 KEGG: sjp:SJA_C1-24800 hypothetical protein YP_004553806.1 PFAM: 2-nitropropane dioxygenase, NPD; KEGG: sjp:SJA_C1-24810 2-nitropropane dioxygenase family protein YP_004553807.1 KEGG: sjp:SJA_C1-24820 aspartate kinase; TIGRFAM: Aspartate kinase region; Aspartate kinase, monofunctional class; PFAM: Aspartate/glutamate/uridylate kinase; Amino acid-binding ACT YP_004553808.1 TIGRFAM: Ubiquinone biosynthesis O-methyltransferase; KEGG: sjp:SJA_C1-24840 hexaprenyldihydroxybenzoate methyltransferase; PFAM: Methyltransferase type 11 YP_004553809.1 KEGG: sjp:SJA_C1-24860 hypothetical protein YP_004553810.1 PFAM: HpcH/HpaI aldolase; KEGG: sjp:SJA_C1-26890 citrate lyase beta chain YP_004553811.1 KEGG: sjp:SJA_C1-26900 putative protease; PFAM: Band 7 protein; SMART: Band 7 protein YP_004553812.1 PFAM: Nodulation efficiency, NfeD; KEGG: sjp:SJA_C1-26910 putative modifier of protease activity YP_004553813.1 KEGG: sjp:SJA_C1-10850 ferredoxin-NADP+ reductase; PFAM: Oxidoreductase FAD/NAD(P)-binding; Oxidoreductase FAD-binding region YP_004553814.1 KEGG: sjp:SJA_C1-10840 hypothetical protein YP_004553815.1 KEGG: sjp:SJA_C1-10830 hypothetical protein YP_004553816.1 TIGRFAM: Phosphoenolpyruvate carboxykinase, ATP-utilising; HAMAP: Phosphoenolpyruvate carboxykinase [ATP]; KEGG: sjp:SJA_C1-10820 phosphoenolpyruvate carboxykinase (ATP); PFAM: Phosphoenolpyruvate carboxykinase, ATP-utilising YP_004553817.1 KEGG: sjp:SJA_C1-10800 two-component system response regulator CreB; PFAM: Signal transduction response regulator, receiver region; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver region YP_004553818.1 KEGG: sjp:SJA_C1-10790 signal transduction histidine kinase; PFAM: ATP-binding region, ATPase-like; HAMP linker domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; HAMP linker domain YP_004553819.1 PFAM: Signal transduction serine kinase/phosphorylase, HPr(Ser) kinase, C-terminal; KEGG: sjp:SJA_C1-10780 HPr kinase/phosphorylase YP_004553820.1 HAMAP: ATPase, P-loop-containing; KEGG: sjp:SJA_C1-10770 putative kinase YP_004553821.1 PFAM: Phosphotransferase system, fructose subfamily IIA component; KEGG: sjp:SJA_C1-10760 PTS mannose-specific IIA component YP_004553822.1 KEGG: sjp:SJA_C1-10750 PTS HPr-related protein; TIGRFAM: Phosphotransferase system, phosphocarrier HPr protein; PFAM: Phosphotransferase system, phosphocarrier HPr protein YP_004553823.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate cyclase, predicted; GAF; KEGG: sjp:SJA_C1-10740 putative GAF sensor diguanylate cyclase; SMART: Diguanylate cyclase, predicted; GAF YP_004553824.1 PFAM: tRNA/rRNA methyltransferase, SpoU; RNA 2-O ribose methyltransferase, substrate binding; KEGG: sjp:SJA_C1-10640 RNA methyltransferase YP_004553825.1 PFAM: Major facilitator superfamily MFS-1; KEGG: sjp:SJA_C1-10630 putative MFS permease YP_004553826.1 PFAM: GCN5-related N-acetyltransferase; KEGG: sjp:SJA_C1-10620 putative acetyltransferase YP_004553827.1 PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; KEGG: sjp:SJA_C1-10610 TonB-dependent receptor-like protein YP_004553828.1 TIGRFAM: Ribosomal protein L19; HAMAP: Ribosomal protein L19; KEGG: sjp:SJA_C1-10600 ribosomal protein L19; PFAM: Ribosomal protein L19 YP_004553829.1 PFAM: tRNA (guanine-N1-)-methyltransferase; TIGRFAM: tRNA (guanine-N1-)-methyltransferase, bacteria; HAMAP: tRNA (guanine-N1-)-methyltransferase, bacteria; KEGG: sjp:SJA_C1-10590 tRNA (guanine-N1-)-methyltransferase YP_004553830.1 KEGG: sjp:SJA_C1-10580 hypothetical protein YP_004553831.1 TIGRFAM: 16S rRNA processing protein RimM; HAMAP: 16S rRNA processing protein RimM; KEGG: sjp:SJA_C1-10570 16S rRNA processing protein RimM; PFAM: RimM protein; PRC-barrel YP_004553832.1 TIGRFAM: Ribosomal protein S16; HAMAP: Ribosomal protein S16; KEGG: sjp:SJA_C1-10560 ribosomal protein S16; PFAM: Ribosomal protein S16 YP_004553833.1 TIGRFAM: Signal recognition particle, SRP; PFAM: Signal recognition particle, SRP54 subunit, GTPase; Signal recognition particle, SRP54 subunit, helical bundle; Signal recognition particle, SRP54 subunit, M-domain; KEGG: sjp:SJA_C1-10550 signal recognition particle subunit SRP54; SMART: ATPase, AAA+ type, core YP_004553834.1 KEGG: aex:Astex_2061 hypothetical protein YP_004553835.1 PFAM: Amino acid permease-associated region; KEGG: sjp:SJA_C1-27490 amino acid transporter YP_004553836.1 PFAM: Diaminopimelate epimerase; TIGRFAM: Diaminopimelate epimerase; HAMAP: Diaminopimelate epimerase; KEGG: sjp:SJA_C1-27500 diaminopimelate epimerase YP_004553837.1 TIGRFAM: MiaB-like tRNA modifying enzyme; Methylthiotransferase; PFAM: Radical SAM; Methylthiotransferase, N-terminal; KEGG: sjp:SJA_C1-27510 MiaB-like enzyme; SMART: Elongator protein 3/MiaB/NifB YP_004553838.1 TIGRFAM: Cell division transporter substrate-binding protein FtsY; PFAM: Signal recognition particle, SRP54 subunit, GTPase; Signal recognition particle, SRP54 subunit, helical bundle; KEGG: sjp:SJA_C1-27520 signal recognition particle GTPase; SMART: ATPase, AAA+ type, core YP_004553839.1 KEGG: sjp:SJA_C1-27530 intracellular septation protein A; TIGRFAM: Intracellular septation protein A; PFAM: Intracellular septation protein A YP_004553840.1 KEGG: sjp:SJA_C1-27540 hypothetical protein YP_004553841.1 KEGG: sjp:SJA_C1-27550 superoxide dismutase; PFAM: Manganese/iron superoxide dismutase, C-terminal; Manganese/iron superoxide dismutase, N-terminal YP_004553842.1 PFAM: Haemerythrin/HHE cation-binding motif; KEGG: sjp:SJA_C1-27560 hypothetical protein YP_004553843.1 KEGG: sjp:SJA_C1-27570 hypothetical protein YP_004553844.1 manually curated; PFAM: Heat shock protein DnaJ, N-terminal; KEGG: sjp:SJA_C1-27580 DnaJ-like protein; SMART: Heat shock protein DnaJ, N-terminal YP_004553845.1 KEGG: sjp:SJA_C1-10480 N-acetylmuramoyl-L-alanine amidase; PFAM: N-acetylmuramoyl-L-alanine amidase, family 2; SMART: N-acetylmuramoyl-L-alanine amidase, family 2 YP_004553846.1 PFAM: MCP methyltransferase, CheR-type; KEGG: sjp:SJA_C1-10470 chemotaxis protein methyltransferase CheR; SMART: MCP methyltransferase, CheR-type YP_004553847.1 PFAM: Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase; Signal transduction response regulator, receiver region; KEGG: sjp:SJA_C1-10460 two-component system response regulator CheB; SMART: Signal transduction response regulator, receiver region YP_004553848.1 KEGG: sjp:SJA_C1-10450 two-component system response regulator CheY; PFAM: Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region YP_004553849.1 KEGG: sjp:SJA_C1-10440 chemotaxis signal transduction protein; PFAM: CheW-like protein; SMART: CheW-like protein YP_004553850.1 KEGG: sjp:SJA_C1-10430 two-component system sensor kinase CheA; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, phosphotransfer (Hpt) region; Signal transduction histidine kinase, subgroup, homodimeric; CheW-like protein; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, phosphotransfer (Hpt) region; CheW-like protein YP_004553851.1 KEGG: sjp:SJA_C1-10420 hypothetical protein YP_004553852.1 TIGRFAM: Large-conductance mechanosensitive channel; HAMAP: Large-conductance mechanosensitive channel; KEGG: sjp:SJA_C1-10400 large conductance mechanosensitive channel; PFAM: Large-conductance mechanosensitive channel YP_004553853.1 PFAM: LemA; KEGG: sjp:SJA_C1-10390 hypothetical LemA-like protein YP_004553854.1 PFAM: Protein of unknown function DUF477; KEGG: sjp:SJA_C1-10380 hypothetical protein YP_004553855.1 PFAM: Protein of unknown function DUF477; KEGG: sjp:SJA_C1-10370 hypothetical protein YP_004553856.1 KEGG: sjp:SJA_C1-10360 putative NTP pyrophosphohydrolase; manually curated; PFAM: NUDIX hydrolase domain YP_004553857.1 KEGG: sjp:SJA_C1-33000 hypothetical protein YP_004553858.1 KEGG: sjp:SJA_C1-33010 Xre-family transcriptional regulator; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3 YP_004553859.1 PFAM: Glycosyl transferase, group 1; KEGG: sjp:SJA_C1-33020 putative glycosyltransferase YP_004553860.1 manually curated; KEGG: sjp:SJA_C1-33050 putative nitrate reductase; PFAM: Molybdopterin oxidoreductase Fe4S4 region; Molybdopterin oxidoreductase YP_004553861.1 KEGG: sjp:SJA_C1-33060 molybdate transport system substrate-binding protein; TIGRFAM: Molybdenum ABC transporter, periplasmic binding protein; PFAM: Bacterial extracellular solute-binding, family 1 YP_004553862.1 KEGG: sjp:SJA_C1-33070 putative hydrolase; TIGRFAM: HAD-superfamily hydrolase, subfamily IIB; PFAM: HAD superfamily hydrolase-like, type 3 YP_004553863.1 KEGG: sjp:SJA_C1-33080 molybdate transport system permease protein; TIGRFAM: Molybdate ABC transporter, permease protein; PFAM: Binding-protein-dependent transport systems inner membrane component YP_004553864.1 PFAM: ABC transporter-like; KEGG: sjp:SJA_C1-33090 molybdate transport system ATP-binding protein; SMART: ATPase, AAA+ type, core YP_004553865.1 PFAM: Aminoglycoside phosphotransferase; KEGG: sjp:SJA_C1-33100 putative aminoglycoside phosphotransferase YP_004553866.1 PFAM: Capsule polysaccharide biosynthesis; KEGG: sjp:SJA_C1-33110 capsular polysaccharide export protein YP_004553867.1 PFAM: Capsule polysaccharide biosynthesis; KEGG: sjp:SJA_C1-33120 capsular polysaccharide export protein YP_004553868.1 PFAM: Glycosyl transferase, group 1; KEGG: sjp:SJA_C1-33130 putative glycosyltransferase YP_004553869.1 PFAM: Histidine triad (HIT) protein; KEGG: sjp:SJA_C1-33140 Hit-like protein involved in cell-cycle regulation YP_004553870.1 TIGRFAM: ThiS, thiamine-biosynthesis; HAMAP: Thiazole biosynthesis; KEGG: sjp:SJA_C1-33180 thiamine biosynthesis protein ThiG; PFAM: Thiazole biosynthesis; ThiamineS YP_004553871.1 PFAM: Dehydroquinase, class II; TIGRFAM: Dehydroquinase, class II; HAMAP: Dehydroquinase, class II; KEGG: sjp:SJA_C1-33190 3-dehydroquinate dehydratase II YP_004553872.1 KEGG: sjp:SJA_C1-33200 acetyl-CoA carboxylase biotin carboxyl carrier protein; TIGRFAM: Acetyl-CoA biotin carboxyl carrier; PFAM: Biotin/lipoyl attachment YP_004553873.1 TIGRFAM: Acetyl-CoA carboxylase, biotin carboxylase; KEGG: sjp:SJA_C1-33210 biotin carboxylase; PFAM: Carbamoyl phosphate synthetase, large subunit, ATP-binding; Carbamoyl phosphate synthase, large subunit, N-terminal; Biotin carboxylase, C-terminal YP_004553874.1 KEGG: sjp:SJA_C1-33220 arsenate reductase; TIGRFAM: Arsenate reductase; PFAM: Arsenate reductase-like YP_004553875.1 TIGRFAM: DNA polymerase 1; PFAM: DNA-directed DNA polymerase, family A, palm domain; 5'-3' exonuclease, N-terminal resolvase-like domain; 5'-3' exonuclease, SAM-fold domain; 3'-5' exonuclease; KEGG: sjp:SJA_C1-33240 DNA polymerase I; SMART: 5'-3' exonuclease, N-terminal; Helix-hairpin-helix motif, class 2; 3'-5' exonuclease; DNA-directed DNA polymerase, family A, palm domain YP_004553876.1 TIGRFAM: Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; KEGG: sjp:SJA_C1-33250 mannose-1-phosphate guanylyltransferase; PFAM: Mannose-6-phosphate isomerase, type II, C-terminal; Nucleotidyl transferase YP_004553877.1 KEGG: sjp:SJA_C1-33260 hypothetical protein YP_004553878.1 KEGG: sjp:SJA_C1-33270 putative integral membrane protein; manually curated; PFAM: Uncharacterised protein family UPF0005 YP_004553880.1 TIGRFAM: Cysteinyl-tRNA synthetase, class Ia; KEGG: sjp:SJA_C1-33290 cysteinyl-tRNA synthetase; PFAM: Cysteinyl-tRNA synthetase, class Ia, N-terminal YP_004553881.1 manually curated; KEGG: sjp:SJA_C1-33300 hypothetical protein YP_004553882.1 TIGRFAM: DAHP synthetase, class II; KEGG: sjp:SJA_C1-33310 3-deoxy-7-phosphoheptulonate synthase; PFAM: DAHP synthetase, class II YP_004553883.1 PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: sjp:SJA_C1-33320 ParA-like protein YP_004553884.1 KEGG: sjp:SJA_C1-33340 putative acyl-CoA synthetase; PFAM: AMP-dependent synthetase/ligase YP_004553885.1 KEGG: sjp:SJA_C1-33360 regulatory protein RecX YP_004553886.1 PFAM: Protein of unknown function DUF192; KEGG: sjp:SJA_C1-33370 hypothetical protein YP_004553887.1 PFAM: NADH:ubiquinone oxidoreductase, 17.2kDa subunit; KEGG: sjp:SJA_C1-33380 putative NADH:ubiquinone oxidoreductase subunit YP_004553888.1 PFAM: Protein of unknown function DUF2155; KEGG: nar:Saro_0825 hypothetical protein YP_004553889.1 KEGG: sjp:SJA_C1-33390 leucyl/phenylalanyl-tRNA-protein transferase; manually curated; TIGRFAM: Leucyl/phenylalanyl-tRNA-protein transferase; PFAM: Leucyl/phenylalanyl-tRNA-protein transferase; HAMAP: Leucyl/phenylalanyl-tRNA-protein transferase YP_004553890.1 TIGRFAM: Succinate dehydrogenase, flavoprotein subunit; Succinate dehydrogenase/fumarate reductase, flavoprotein subunit; KEGG: sjp:SJA_C1-10730 succinate dehydrogenase/fumarate reductase flavoprotein subunit; PFAM: Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal; Fumarate reductase/succinate dehydrogenase flavoprotein, C-terminal YP_004553891.1 KEGG: sjp:SJA_C1-10720 succinate dehydrogenase hydrophobic anchor subunit; TIGRFAM: Succinate dehydrogenase, hydrophobic membrane anchor; PFAM: Succinate dehydrogenase, cytochrome b subunit YP_004553892.1 KEGG: sjp:SJA_C1-10710 succinate dehydrogenase/fumarate reductase cytochrome b subunit; TIGRFAM: Succinate dehydrogenase, cytochrome b556 subunit; PFAM: Succinate dehydrogenase, cytochrome b subunit YP_004553893.1 KEGG: sjp:SJA_C1-10700 twitching motility protein PilJ; PFAM: Chemotaxis methyl-accepting receptor, signalling; SMART: Chemotaxis methyl-accepting receptor, signalling YP_004553894.1 PFAM: Ribosomal L11 methyltransferase; KEGG: sjp:SJA_C1-10350 ribosomal protein L11 methyltransferase YP_004553895.1 PFAM: Dienelactone hydrolase; KEGG: sjp:SJA_C1-33470 putative dienelactone hydrolase YP_004553896.1 TIGRFAM: Nicotinate-nucleotide pyrophosphorylase; KEGG: sjp:SJA_C1-28370 nicotinate-nucleotide pyrophosphorylase (carboxylating); PFAM: Quinolinate phosphoribosyl transferase YP_004553897.1 PFAM: Quinolinate synthetase A; TIGRFAM: Quinolinate synthetase A; HAMAP: Quinolinate synthase A; KEGG: sjp:SJA_C1-28390 quinolinate synthase YP_004553898.1 KEGG: eli:ELI_00470 hypothetical protein YP_004553899.1 KEGG: sjp:SJA_C1-28400 putative hydrolase/glyoxylase YP_004553900.1 KEGG: sjp:SJA_C1-28410 integrase/recombinase XerC; HAMAP: Tyrosine recombinase xerC; PFAM: Integrase, catalytic core, phage; Integrase, N-terminal SAM-like, phage YP_004553901.1 PFAM: SNARE associated Golgi protein; KEGG: sjp:SJA_C1-28420 DedA-family protein YP_004553902.1 PFAM: Prokaryotic glutathione synthetase, ATP-binding; Prokaryotic glutathione synthetase, N-terminal; TIGRFAM: Glutathione synthetase, prokaryotic; HAMAP: Glutathione synthetase, prokaryotic; KEGG: sjp:SJA_C1-28430 glutathione synthase YP_004553903.1 KEGG: sjp:SJA_C1-28440 putative endonuclease; HAMAP: Uncharacterised protein family UPF0102; PFAM: Uncharacterised protein family UPF0102 YP_004553904.1 TIGRFAM: Uncharacterised protein family UPF0011; HAMAP: Ribosomal RNA small subunit methyltransferase I; KEGG: sjp:SJA_C1-28450 putative methyltransferase; PFAM: Tetrapyrrole methylase YP_004553905.1 PFAM: Extracellular ligand-binding receptor; KEGG: sjp:SJA_C1-28460 ABC-type transport system periplasmic component YP_004553906.1 PFAM: ABC transporter-like; KEGG: sjp:SJA_C1-28470 ABC-type transport system ATPase component; SMART: ATPase, AAA+ type, core YP_004553907.1 PFAM: Bacterial transport system permease protein; KEGG: sjp:SJA_C1-28480 ABC-type transport system permease component YP_004553908.1 PFAM: Periplasmic binding protein; KEGG: sjp:SJA_C1-28490 ABC-type transport system periplasmic component YP_004553909.1 PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: sjp:SJA_C1-28500 outer membrane cobalamin receptor protein YP_004553910.1 HAMAP: Molybdopterin-guanine dinucleotide biosynthesis protein A; KEGG: sjp:SJA_C1-28510 molybdopterin-guanine dinucleotide biosynthesis protein A YP_004553911.1 TIGRFAM: Uroporphyrin-III C-methyltransferase, C-terminal; KEGG: sjp:SJA_C1-28520 uroporphyrin-III C-methyltransferase; PFAM: Tetrapyrrole methylase YP_004553912.1 KEGG: sjp:SJA_C1-28530 ferredoxin-nitrate reductase; PFAM: Molybdopterin oxidoreductase; Molybdopterin oxidoreductase Fe4S4 region; Molydopterin dinucleotide-binding region; BFD-like [2Fe-2S]-binding region YP_004553913.1 KEGG: sjp:SJA_C1-28540 nitrite reductase (NAD(P)H) small subunit; TIGRFAM: Nitrite reductase [NAD(P)H] large subunit, NirD; PFAM: Rieske [2Fe-2S] iron-sulphur domain YP_004553914.1 TIGRFAM: Nitrite reductase [NAD(P)H] large subunit, NirB; KEGG: sjp:SJA_C1-28550 nitrite reductase (NAD(P)H) large subunit; PFAM: Nitrite/sulphite reductase 4Fe-4S region; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; BFD-like [2Fe-2S]-binding region; Nitrite/sulphite reductase, hemoprotein beta-component, ferrodoxin-like YP_004553915.1 PFAM: Major facilitator superfamily MFS-1; KEGG: sjp:SJA_C1-28560 nitrate transporter YP_004553916.1 KEGG: sjp:SJA_C1-28580 ABC-type transport system periplasmic component YP_004553917.1 KEGG: sjp:SJA_C1-28590 response regulator NasT; PFAM: ANTAR; Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region YP_004553918.1 KEGG: sjp:SJA_C1-28600 putative MFS permease; TIGRFAM: Drug resistance transporter EmrB/QacA subfamily; PFAM: Major facilitator superfamily MFS-1 YP_004553919.1 KEGG: sjp:SJA_C1-28610 multidrug resistance protein A; TIGRFAM: Efflux pump membrane protein Emr; PFAM: Secretion protein HlyD YP_004553920.1 KEGG: sjp:SJA_C1-28620 RND-family efflux transporter; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT; PFAM: Outer membrane efflux protein YP_004553921.1 PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: sjp:SJA_C1-28630 TetR-family transcriptional regulator YP_004553922.1 KEGG: sjp:SJA_C1-28640 CheY-like response regulator; PFAM: Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region YP_004553923.1 PFAM: Mg2+ transporter protein, CorA-like; KEGG: sjp:SJA_C1-28650 MIT-family metal ion transporter YP_004553924.1 KEGG: sjp:SJA_C1-28660 siroheme synthase; TIGRFAM: Sirohaem synthase, N-terminal; PFAM: Tetrapyrrole methylase YP_004553925.1 TIGRFAM: Diaminopimelate decarboxylase; KEGG: sjp:SJA_C1-28670 diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2 YP_004553926.1 KEGG: sjp:SJA_C1-28680 hypothetical protein YP_004553927.1 PFAM: Fumarate lyase; TIGRFAM: Argininosuccinate lyase; HAMAP: Argininosuccinate lyase; KEGG: sjp:SJA_C1-28690 argininosuccinate lyase YP_004553928.1 PFAM: Redoxin; KEGG: sjp:SJA_C1-28700 thioredoxin-family protein YP_004553929.1 PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; KEGG: sjp:SJA_C1-28720 TonB-dependent receptor-like protein YP_004553930.1 PFAM: Endoribonuclease L-PSP; KEGG: sjp:SJA_C1-28730 YjgF-family protein YP_004553931.1 TIGRFAM: Glutamine amidotransferase of anthranilate synthase; KEGG: sjp:SJA_C1-08380 anthranilate synthase component II; PFAM: Glutamine amidotransferase class-I, C-terminal YP_004553932.1 PFAM: Glycosyl transferase, family 3; Glycosyl transferase, family 3, N-terminal; TIGRFAM: Anthranilate phosphoribosyl transferase; HAMAP: Anthranilate phosphoribosyl transferase; KEGG: sjp:SJA_C1-08390 anthranilate phosphoribosyltransferase YP_004553933.1 KEGG: sjp:SJA_C1-08400 indole-3-glycerol phosphate synthase; PFAM: Indole-3-glycerol phosphate synthase YP_004553934.1 KEGG: sjp:SJA_C1-08410 molybdenum cofactor biosynthesis protein C; TIGRFAM: Molybdopterin cofactor biosynthesis MoaC region; PFAM: Molybdopterin cofactor biosynthesis MoaC region YP_004553935.1 KEGG: sjp:SJA_C1-08420 molybdopterin biosynthesis protein MoeA; TIGRFAM: Molybdenum cofactor synthesis; PFAM: Molybdopterin binding; MoeA, N-terminal region, domain I/II; MoeA, C-terminal, domain IV YP_004553938.1 TIGRFAM: Peptidase S24, LexA repressor; HAMAP: LexA repressor; KEGG: sjp:SJA_C1-08440 repressor LexA; PFAM: LexA DNA-binding region; Peptidase S24/S26A/S26B, conserved region YP_004553939.1 KEGG: swi:Swit_3214 ComEC/Rec2-related protein; TIGRFAM: ComEC/Rec2-related protein; PFAM: ComEC/Rec2-related protein YP_004553940.1 TIGRFAM: Glutamyl-tRNA synthetase, class Ic, bacterial/mitochondrial; KEGG: sjp:SJA_C1-08940 glutamyl-tRNA synthetase; PFAM: Glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain YP_004553941.1 KEGG: sjp:SJA_C1-08950 citrate synthase I; TIGRFAM: Citrate synthase, type II; PFAM: Citrate synthase-like YP_004553942.1 KEGG: sjp:SJA_C1-32750 hypothetical protein YP_004553943.1 KEGG: sjp:SJA_C1-32760 hypothetical protein YP_004553944.1 PFAM: Phosphatidic acid phosphatase type 2/haloperoxidase; KEGG: reh:H16_B1238 acid phosphatase; SMART: Phosphatidic acid phosphatase type 2/haloperoxidase YP_004553945.1 SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal; TIGRFAM: Excinuclease ABC, B subunit; KEGG: sjp:SJA_C1-32800 excinuclease ABC subunit B; HAMAP: Excinuclease ABC, B subunit; PFAM: DNA/RNA helicase, C-terminal; Restriction endonuclease, type I, R subunit/Type III, Res subunit; UvrB/UvrC protein YP_004553946.1 KEGG: sjp:SJA_C1-23630 putative hydrolase YP_004553947.1 KEGG: sjp:SJA_C1-07370 hypothetical protein YP_004553948.1 KEGG: sjp:SJA_C1-07360 proline iminopeptidase; TIGRFAM: Peptidase S33, proline iminopeptidase 1; PFAM: Alpha/beta hydrolase fold-1 YP_004553949.1 KEGG: sjp:SJA_C1-07350 TonB-dependent receptor-like protein YP_004553950.1 TIGRFAM: Diguanylate cyclase, predicted; PAS; PFAM: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; Type IV pilus assembly PilZ; KEGG: sjp:SJA_C1-09110 putative signal transduction protein; SMART: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; PAS YP_004553951.1 SMART: DNA polymerase III, beta chain; TIGRFAM: DNA polymerase III, beta chain; KEGG: sjp:SJA_C1-09100 DNA polymerase III beta subunit; PFAM: DNA polymerase III, beta chain YP_004553952.1 KEGG: sjp:SJA_C1-09090 hypothetical protein YP_004553953.1 TIGRFAM: Ribosomal RNA large subunit methyltransferase RlmN; HAMAP: Ribosomal RNA large subunit methyltransferase RlmN; KEGG: sjp:SJA_C1-09080 hypothetical protein; PFAM: Radical SAM YP_004553954.1 KEGG: sjp:SJA_C1-09070 hypothetical protein YP_004553955.1 KEGG: sjp:SJA_C1-09060 putative outer membrane protein YP_004553956.1 KEGG: sjp:SJA_C1-09050 putative cytochrome b561 YP_004553957.1 PFAM: Oxidoreductase, molybdopterin binding; KEGG: sjp:SJA_C1-09040 putative oxidoreductase YP_004553958.1 KEGG: sjp:SJA_C1-09030 cyclopropane-fatty-acyl-phospholipid synthase; PFAM: Cyclopropane-fatty-acyl-phospholipid synthase YP_004553959.1 KEGG: sjp:SJA_C1-09020 hypothetical protein YP_004553960.1 KEGG: sjp:SJA_C1-09010 hypothetical protein; manually curated; PFAM: Protein of unknown function DUF350 YP_004553961.1 KEGG: sjp:SJA_C1-09000 putative protease YP_004553962.1 KEGG: sjp:SJA_C1-08990 hypothetical protein YP_004553963.1 PFAM: Cysteine, histidine-dependent amidohydrolase/peptidase; KEGG: sjp:SJA_C1-08980 surface antigen YP_004553964.1 PFAM: Cysteine, histidine-dependent amidohydrolase/peptidase; KEGG: sjp:SJA_C1-08970 surface antigen YP_004553965.1 TIGRFAM: DNA-binding, RecF; HAMAP: DNA replication and repair protein recF; KEGG: sjp:SJA_C1-08960 DNA replication and repair protein RecF; PFAM: RecF/RecN/SMC protein, N-terminal YP_004553966.1 KEGG: sjp:SJA_C1-07760 hypothetical protein YP_004553967.1 PFAM: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; KEGG: sjp:SJA_C1-07750 peroxiredoxin YP_004553968.1 KEGG: sjp:SJA_C1-07740 carboxymethylenebutenolidase; PFAM: Dienelactone hydrolase YP_004553969.1 PFAM: AIG2-like; KEGG: sjp:SJA_C1-07730 hypothetical protein YP_004553971.1 PFAM: PspC; KEGG: sjp:SJA_C1-07720 phage shock protein C YP_004553972.1 PFAM: Protein of unknown function DUF72; KEGG: sjp:SJA_C1-07700 hypothetical protein YP_004553973.1 PFAM: Peptidyl-prolyl cis-trans isomerase, cyclophilin-type; KEGG: sjp:SJA_C1-32740 peptidyl-prolyl cis-trans isomerase A YP_004553974.1 KEGG: sjp:SJA_C1-32130 single-stranded DNA-specific exonuclease; TIGRFAM: Bacterial RecJ exonuclease; PFAM: Phosphoesterase, RecJ-like; Phosphoesterase, DHHA1 YP_004553975.1 PFAM: Bacterial surface antigen (D15); Surface antigen variable number; KEGG: sjp:SJA_C1-32140 putative outer membrane protein YP_004553976.1 PFAM: Protein of unknown function DUF490; KEGG: sjp:SJA_C1-32150 hypothetical protein YP_004553977.1 SMART: ATPase, AAA+ type, core; TIGRFAM: DNA recombination and repair protein RecA; KEGG: sjp:SJA_C1-32810 recombination protein RecA; HAMAP: DNA recombination and repair protein RecA; PFAM: DNA recombination and repair protein RecA YP_004553978.1 SMART: Signal transduction response regulator, receiver region; KEGG: sjp:SJA_C1-32820 CheY-like response regulator YP_004553979.1 KEGG: sjp:SJA_C1-32830 two-component system sensor sporulation kinase A; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; PAS fold-4; Signal transduction response regulator, receiver region; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; Signal transduction response regulator, receiver region YP_004553980.1 PFAM: Protein of unknown function DUF2062; KEGG: sjp:SJA_C1-32840 hypothetical protein YP_004553981.1 TIGRFAM: SsrA-binding protein; HAMAP: SsrA-binding protein; KEGG: sjp:SJA_C1-32850 SsrA-binding protein; PFAM: SsrA-binding protein YP_004553982.1 PFAM: Dihydrodipicolinate synthetase; TIGRFAM: Dihydrodipicolinate synthase subfamily; HAMAP: Dihydrodipicolinate synthase; KEGG: sjp:SJA_C1-32860 dihydrodipicolinate synthase YP_004553983.1 PFAM: Lytic transglycosylase-like, catalytic; KEGG: sjp:SJA_C1-32870 putative lytic transglycosylase YP_004553984.1 TIGRFAM: Transcription elongation factor GreB, prokaryotic; HAMAP: Transcription elongation factor greA; KEGG: sjp:SJA_C1-32880 transcription elongation factor GreB; PFAM: Transcription elongation factor, GreA/GreB region, prokaryotic YP_004553985.1 KEGG: sjp:SJA_C1-32890 hypothetical protein YP_004553986.1 PFAM: Polyphosphate kinase 2; KEGG: sjp:SJA_C1-32900 hypothetical protein YP_004553987.1 TIGRFAM: Aspartyl-tRNA synthetase, class IIb, bacterial/mitochondrial type; KEGG: sjp:SJA_C1-32910 aspartyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class II (D/K/N); Nucleic acid binding, OB-fold, tRNA/helicase-type; GAD domain YP_004553988.1 SMART: 3'-5' exonuclease; TIGRFAM: Ribonuclease D; KEGG: sjp:SJA_C1-32920 ribonuclease D; PFAM: 3'-5' exonuclease; Helicase/RNase D C-terminal, HRDC domain YP_004553989.1 KEGG: sjp:SJA_C1-32930 hypothetical protein YP_004553990.1 PFAM: Protein of unknown function DUF1801; KEGG: pde:Pden_0329 hypothetical protein YP_004553991.1 KEGG: sjp:SJA_C1-32940 hypothetical protein YP_004553992.1 PFAM: Protein of unknown function DUF304, prokaryotic transmembrane adjacent region; KEGG: sjp:SJA_C1-32950 hypothetical protein YP_004553993.1 manually curated; TIGRFAM: Putative addiction module antidote; KEGG: sjp:SJA_C1-32960 AbrB-family transcriptional regulator; PFAM: Transcription regulator AbrB/SpoV, predicted YP_004553994.1 manually curated; TIGRFAM: Death-on-curing protein; KEGG: tin:Tint_3020 death-on-curing family protein; PFAM: Filamentation induced by cAMP/death on curing, related YP_004553995.1 TIGRFAM: GTP-binding protein LepA; Small GTP-binding protein; HAMAP: GTP-binding protein lepA; KEGG: sjp:SJA_C1-32980 GTP-binding protein LepA; PFAM: GTP-binding protein LepA, C-terminal; Protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, domain 2; Translation elongation factor EFG/EF2, C-terminal YP_004553996.1 PFAM: Acyltransferase 3; KEGG: sjp:SJA_C1-06500 putative acyltransferase YP_004553997.1 PFAM: Polyketide cyclase/dehydrase; KEGG: sjp:SJA_C1-06490 hypothetical protein YP_004553998.1 TIGRFAM: Adenylate kinase, subfamily; HAMAP: Adenylate kinase; KEGG: sjp:SJA_C1-06480 adenylate kinase; PFAM: Adenylate kinase; Adenylate kinase, zinc-finger lid region YP_004553999.1 KEGG: sjp:SJA_C1-06470 preprotein translocase SecY subunit; TIGRFAM: SecY protein; PFAM: SecY protein YP_004554000.1 KEGG: sjp:SJA_C1-06460 ribosomal protein L15; TIGRFAM: Ribosomal protein L15, bacterial-type; PFAM: Ribosomal protein L15 YP_004554001.1 KEGG: sjp:SJA_C1-06450 ribosomal protein L30/L7E; TIGRFAM: Ribosomal protein L30, bacterial-type; PFAM: Ribosomal protein L30p/L7e, conserved region YP_004554002.1 KEGG: sjp:SJA_C1-06440 ribosomal protein S5; TIGRFAM: Ribosomal protein S5, bacterial-type; PFAM: Ribosomal protein S5, N-terminal; Ribosomal protein S5, C-terminal YP_004554003.1 KEGG: sjp:SJA_C1-06430 ribosomal protein L18; TIGRFAM: Ribosomal protein L18, bacterial; PFAM: Ribosomal protein L18/L5 YP_004554004.1 KEGG: sjp:SJA_C1-06420 ribosomal protein L6P/L9E; TIGRFAM: Ribosomal protein L6, bacterial-type; PFAM: Ribosomal protein L6, alpha-beta domain YP_004554005.1 PFAM: Ribosomal protein S8; KEGG: sjp:SJA_C1-06410 ribosomal protein S8 YP_004554006.1 KEGG: sjp:SJA_C1-06400 ribosomal protein S14; HAMAP: 30S ribosomal protein S14; PFAM: Ribosomal protein S14 YP_004554007.1 PFAM: Ribosomal protein L5; KEGG: sjp:SJA_C1-06390 ribosomal protein L5 YP_004554008.1 TIGRFAM: Ribosomal protein L24; PFAM: KOW; KEGG: sjp:SJA_C1-06380 ribosomal protein L24; SMART: KOW YP_004554009.1 KEGG: sjp:SJA_C1-06370 ribosomal protein L14; TIGRFAM: Ribosomal protein L14, bacterial-type; PFAM: Ribosomal protein L14b/L23e YP_004554010.1 KEGG: sjp:SJA_C1-06360 ribosomal protein S17; TIGRFAM: Ribosomal protein S17, bacterial-type; PFAM: Ribosomal protein S17 YP_004554011.1 KEGG: sjp:SJA_C1-06350 ribosomal protein L29; TIGRFAM: Ribosomal protein L29; PFAM: Ribosomal protein L29 YP_004554012.1 KEGG: sjp:SJA_C1-06340 ribosomal protein L16/L10E; TIGRFAM: Ribosomal protein L16; PFAM: Ribosomal protein L10e/L16 YP_004554013.1 TIGRFAM: Ribosomal protein S3, bacterial; PFAM: Ribosomal protein S3, C-terminal; Ribosomal protein S3, N-terminal; K Homology, type 2; KEGG: sjp:SJA_C1-06330 ribosomal protein S3; SMART: K Homology YP_004554014.1 KEGG: sjp:SJA_C1-06320 ribosomal protein L22; TIGRFAM: Ribosomal protein L22, bacterial-type; PFAM: Ribosomal protein L22/L17 YP_004554015.1 KEGG: sjp:SJA_C1-06310 ribosomal protein S19; TIGRFAM: Ribosomal protein S19, bacterial-type; PFAM: Ribosomal protein S19/S15 YP_004554016.1 KEGG: sjp:SJA_C1-06300 ribosomal protein L2; TIGRFAM: Ribosomal protein L2, bacterial-type; PFAM: Ribosomal protein L2 YP_004554017.1 PFAM: Ribosomal protein L25/L23; KEGG: sjp:SJA_C1-06290 ribosomal protein L23 YP_004554018.1 PFAM: Ribosomal protein L4/L1e; KEGG: sjp:SJA_C1-06280 ribosomal protein L4 YP_004554019.1 KEGG: sjp:SJA_C1-06270 ribosomal protein L3; TIGRFAM: Ribosomal protein L3, bacterial/organelle-type; PFAM: Ribosomal protein L3 YP_004554020.1 KEGG: sjp:SJA_C1-06260 ribosomal protein S10; TIGRFAM: Ribosomal protein S10, bacterial; PFAM: Ribosomal protein S10 YP_004554021.1 KEGG: sjp:SJA_C1-06250 GTPase - translation elongation factor; TIGRFAM: Translation elongation factor EFTu/EF1A, bacterial/organelle; Small GTP-binding protein; PFAM: Protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, domain 2; Translation elongation factor EFTu/EF1A, C-terminal YP_004554022.1 KEGG: sjp:SJA_C1-06240 translation elongation factor (GTPase); TIGRFAM: Translation elongation factor EFG/EF2; Small GTP-binding protein; PFAM: Protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, domain 2; Translation elongation factor EFG/EF2, domain IV; Translation elongation factor EFG/EF2, C-terminal YP_004554023.1 KEGG: sjp:SJA_C1-06230 ribosomal protein S7; TIGRFAM: Ribosomal protein S7, bacterial-type; PFAM: Ribosomal protein S7 YP_004554024.1 KEGG: sjp:SJA_C1-06220 ribosomal protein S12; TIGRFAM: Ribosomal protein S12, bacterial-type; PFAM: Ribosomal protein S12/S23 YP_004554025.1 PFAM: Peptidase M23; KEGG: sjp:SJA_C1-06210 peptidase M23B YP_004554026.1 KEGG: sal:Sala_0024 hypothetical protein; manually curated; PFAM: Protein of unknown function DUF583 YP_004554027.1 TIGRFAM: Mg chelatase-related protein; PFAM: Magnesium chelatase, ChlI subunit; KEGG: sjp:SJA_C1-05930 magnesium chelatase family protein; SMART: ATPase, AAA+ type, core YP_004554028.1 KEGG: sjp:SJA_C1-05920 cell division protein methyltransferase FtsJ; HAMAP: Ribosomal RNA large subunit methyltransferase E; PFAM: Ribosomal RNA methyltransferase RrmJ/FtsJ YP_004554029.1 PFAM: Ppx/GppA phosphatase; KEGG: sjp:SJA_C1-05910 exopolyphosphatase YP_004554030.1 PFAM: Protein of unknown function DUF498; KEGG: sjp:SJA_C1-05900 hypothetical protein YP_004554031.1 KEGG: sjp:SJA_C1-05890 preprotein translocase SecF subunit; TIGRFAM: SecF protein; SecD/SecF/SecDF export membrane protein; PFAM: SecD/SecF/SecDF export membrane protein YP_004554032.1 KEGG: sjp:SJA_C1-05880 preprotein translocase SecD subunit; TIGRFAM: SecD export membrane protein; SecD/SecF/SecDF export membrane protein; PFAM: SecD/SecF/SecDF export membrane protein YP_004554033.1 KEGG: sjp:SJA_C1-05870 preprotein translocase subunit YajC; TIGRFAM: YajC; PFAM: YajC YP_004554034.1 KEGG: azl:AZL_f00800 transposase YP_004554036.1 KEGG: bsb:Bresu_2833 L-lactate dehydrogenase (cytochrome); PFAM: FMN-dependent dehydrogenase YP_004554037.1 KEGG: swi:Swit_4811 hypothetical protein YP_004554038.1 PFAM: Amidase; KEGG: mlo:mlr0229 amidase YP_004554039.1 PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: swi:Swit_4358 TonB-dependent receptor YP_004554040.1 KEGG: nar:Saro_1693 AMP-binding domain protein; PFAM: AMP-dependent synthetase/ligase YP_004554041.1 PFAM: Monooxygenase, FAD-binding; KEGG: pde:Pden_3457 FAD dependent oxidoreductase YP_004554042.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: mrd:Mrad2831_3225 LysR family transcriptional regulator YP_004554043.1 PFAM: Protein of unknown function DUF1028; KEGG: mrd:Mrad2831_3226 hypothetical protein YP_004554044.1 PFAM: Endoribonuclease L-PSP; KEGG: apb:SAR116_0255 endoribonuclease L-PSP superfamily protein YP_004554045.1 KEGG: aldehyde dehydrogenase; PFAM: Aldehyde dehydrogenase YP_004554046.1 TIGRFAM: Acetylornithine deacetylase (ArgE); KEGG: sno:Snov_2629 acetylornithine deacetylase (ArgE); PFAM: Peptidase M20; Peptidase M20, dimerisation YP_004554047.1 KEGG: tpr:Tpau_0381 NADH:flavin oxidoreductase/NADH oxidase; PFAM: NADH:flavin oxidoreductase/NADH oxidase, N-terminal; Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region YP_004554048.1 PFAM: Protein of unknown function DUF861, cupin-3; KEGG: ppg:PputGB1_3509 protein of unknown function DUF861 cupin_3 YP_004554049.1 PFAM: Major facilitator superfamily MFS-1; KEGG: ppf:Pput_3186 major facilitator transporter YP_004554050.1 KEGG: swi:Swit_1901 TonB-dependent receptor; manually curated; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug YP_004554051.1 PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: cak:Caul_5279 TetR family transcriptional regulator YP_004554052.1 KEGG: ara:Arad_9829 beta-glucosidase protein; PFAM: Glycoside hydrolase, family 3, N-terminal; Glycoside hydrolase, family 3, C-terminal YP_004554053.1 KEGG: apt:APA01_14100 sugar transporter YP_004554054.1 PFAM: Oxidoreductase, N-terminal; KEGG: sme:SMc04253 putative oxidoreductase protein YP_004554055.1 PFAM: Protein of unknown function DUF847; Peptidoglycan binding domain; KEGG: sjp:SJA_C1-05860 hypothetical protein YP_004554056.1 KEGG: sjp:SJA_C1-05850 hypothetical protein YP_004554057.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: sjp:SJA_C1-05840 LysR-family transcriptional regulator YP_004554058.1 TIGRFAM: Succinate CoA transferase; KEGG: sjp:SJA_C1-05830 acetyl-CoA hydrolase; PFAM: Acetyl-CoA hydrolase/transferase YP_004554059.1 KEGG: sjp:SJA_C1-05820 hypothetical protein YP_004554060.1 KEGG: sjp:SJA_C1-05810 ribosomal protein S13; TIGRFAM: Ribosomal protein S13, bacterial-type; PFAM: Ribosomal protein S13 YP_004554061.1 KEGG: sjp:SJA_C1-05800 ribosomal protein S11; TIGRFAM: Ribosomal protein S11, bacterial-type; PFAM: Ribosomal protein S11 YP_004554062.1 SMART: DNA-directed RNA polymerase, RpoA/D/Rpb3-type; TIGRFAM: DNA-directed RNA polymerase, alpha subunit; KEGG: sjp:SJA_C1-05790 DNA-directed RNA polymerase alpha subunit; HAMAP: DNA-directed RNA polymerase, alpha subunit; PFAM: DNA-directed RNA polymerase, insert; DNA-directed RNA polymerase, dimerisation; RNA polymerase, alpha subunit, C-terminal YP_004554063.1 TIGRFAM: Ribosomal protein L17; HAMAP: 50S ribosomal protein L17; KEGG: sjp:SJA_C1-05780 ribosomal protein L17; PFAM: Ribosomal protein L17 YP_004554064.1 KEGG: sjp:SJA_C1-05770 prolyl oligopeptidase; PFAM: Peptidase S9A, oligopeptidase, N-terminal beta-propeller; Peptidase S9, prolyl oligopeptidase, catalytic domain YP_004554065.1 KEGG: sjp:SJA_C1-05760 hypothetical protein YP_004554066.1 PFAM: GMP synthase, C-terminal; Glutamine amidotransferase class-I, C-terminal; tRNA methyl transferase-like; TIGRFAM: GMP synthase, C-terminal; GMP synthase, N-terminal; HAMAP: GMP synthase [glutamine-hydrolyzing]; KEGG: sjp:SJA_C1-05730 GMP synthase (glutamine-hydrolyzing) YP_004554067.1 KEGG: fri:FraEuI1c_2806 hypothetical protein YP_004554068.1 KEGG: cak:Caul_1910 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR YP_004554070.1 PFAM: Aminoglycoside phosphotransferase; KEGG: rop:ROP_46010 hypothetical protein YP_004554071.1 KEGG: fal:FRAAL3374 putative coenzyme F420-dependent N(5), N(10)-methylenetetrahydromethanopterin reductase; TIGRFAM: putative F420-dependent oxidoreductase, MSMEG_2249 family; PFAM: Luciferase-like, subgroup YP_004554072.1 KEGG: eba:p2D4 hypothetical protein YP_004554073.1 KEGG: sjp:SJA_C1-04040 hypothetical protein YP_004554074.1 KEGG: sjp:SJA_C1-04030 putative aminotransferase; PFAM: Aminotransferase, class I/II YP_004554075.1 PFAM: RDD; KEGG: ccs:CCNA_00604 hypothetical protein YP_004554076.1 PFAM: Protein of unknown function DUF95, transmembrane; KEGG: mlo:mll8331 hypothetical protein YP_004554077.1 PFAM: Protein of unknown function DUF58; KEGG: ccs:CCNA_00602 hypothetical protein YP_004554078.1 KEGG: bsb:Bresu_1752 ATPase associated with various cellular activities AAA_3; PFAM: ATPase associated with various cellular activities, AAA-3; SMART: ATPase, AAA+ type, core YP_004554079.1 KEGG: ccs:CCNA_00600 hypothetical protein YP_004554080.1 KEGG: sal:Sala_2963 hypothetical protein YP_004554081.1 KEGG: mlo:mlr8336 hypothetical protein YP_004554082.1 KEGG: sjp:SJA_C1-02390 hypothetical protein YP_004554083.1 KEGG: sjp:SJA_C1-02400 glutamate synthase (NADPH) large chain; PFAM: Glutamate synthase, central-C; Glutamine amidotransferase, class-II; Glutamate synthase, central-N; Glutamate synthase, alpha subunit, C-terminal YP_004554084.1 PFAM: Protein of unknown function DUF2059; KEGG: sal:Sala_2139 hypothetical protein YP_004554085.1 TIGRFAM: Glutamate synthase, NADH/NADPH, small subunit 2; KEGG: sjp:SJA_C1-02420 glutamate synthase (NADPH) small chain; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_004554086.1 TIGRFAM: Bacitracin resistance protein BacA; HAMAP: Undecaprenyl-diphosphatase; KEGG: sjp:SJA_C1-02430 undecaprenyl-diphosphatase; PFAM: Bacitracin resistance protein BacA YP_004554087.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: sjp:SJA_C1-02440 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex 9 YP_004554088.1 PFAM: Uncharacterised protein family UPF0016; KEGG: sjp:SJA_C1-02450 hypothetical protein YP_004554089.1 KEGG: sjp:SJA_C1-28740 hypothetical protein YP_004554090.1 KEGG: sjp:SJA_C1-28750 hypothetical protein YP_004554091.1 KEGG: sjp:SJA_C1-28760 ubiquinone biosynthesis monooxygenase COQ7 YP_004554092.1 PFAM: Disulphide bond formation protein DsbB; KEGG: sjp:SJA_C1-28770 disulfide bond formation protein DsbB YP_004554093.1 TIGRFAM: Peptidase S41A, C-terminal protease; PFAM: Peptidase S41; PDZ/DHR/GLGF; KEGG: sjp:SJA_C1-28780 carboxyl-terminal processing protease; SMART: Peptidase S41; PDZ/DHR/GLGF YP_004554094.1 PFAM: Peptidase M23; KEGG: sjp:SJA_C1-02540 putative metalloendopeptidase YP_004554095.1 KEGG: sjp:SJA_C1-02550 conserved hypothetical protein YbeA; HAMAP: Ribosomal RNA large subunit methyltransferase H; PFAM: SPOUT methyltransferase, predicted YP_004554096.1 KEGG: sjp:SJA_C1-02560 iojap-related protein; TIGRFAM: Iojap-related protein; PFAM: Iojap-related protein YP_004554097.1 HAMAP: nicotinate-nucleotide adenylyltransferase; KEGG: sjp:SJA_C1-02570 nicotinate-nucleotide adenylyltransferase; PFAM: Cytidylyltransferase YP_004554098.1 PFAM: RmuC; KEGG: sjp:SJA_C1-04020 hypothetical protein YP_004554099.1 PFAM: ABC transporter-like; KEGG: sjp:SJA_C1-01990 ABC-type transport system ATPase component; SMART: ATPase, AAA+ type, core YP_004554100.1 KEGG: sjp:SJA_C1-01980 RNA polymerase sigma-54 factor; TIGRFAM: RNA polymerase sigma factor 54; PFAM: RNA polymerase sigma factor 54, DNA-binding; RNA polymerase sigma factor 54, core-binding; RNA polymerase sigma factor 54 YP_004554101.1 KEGG: sjp:SJA_C1-01970 D-alanine transaminase; PFAM: Aminotransferase, class IV YP_004554102.1 PFAM: HTH transcriptional regulator, MarR; KEGG: sjp:SJA_C1-01960 MarR-family transcriptional regulator YP_004554103.1 KEGG: azc:AZC_3857 hypothetical protein YP_004554104.1 KEGG: sal:Sala_2649 hypothetical protein YP_004554105.1 TIGRFAM: DGQHR-containing domain; KEGG: bgf:BC1003_0012 DGQHR domain-containing protein YP_004554106.1 KEGG: sal:Sala_2647 hypothetical protein YP_004554107.1 TIGRFAM: DGQHR-containing domain; KEGG: bgf:BC1003_0010 DGQHR domain-containing protein YP_004554108.1 PFAM: 6-pyruvoyl tetrahydropterin synthase-related; KEGG: sal:Sala_2644 putative 6-pyruvoyl tetrahydropterin synthase YP_004554109.1 KEGG: gox:GOX1542 putative aluminum resistance protein; TIGRFAM: Exoenzyme S synthesis protein B/queuosine synthesis; PFAM: Queuosine synthesis-like YP_004554111.1 PFAM: Haloacid dehalogenase-like hydrolase; KEGG: bgf:BC1003_0007 haloacid dehalogenase domain-containing protein hydrolase YP_004554112.1 KEGG: msi:Msm_0114 hypothetical protein YP_004554113.1 KEGG: msi:Msm_0113 DNA helicase; manually curated; PFAM: DNA helicase, UvrD/REP type YP_004554116.1 KEGG: mea:Mex_1p1609 hypothetical protein YP_004554117.1 KEGG: mea:Mex_1p1610 hypothetical protein YP_004554118.1 KEGG: sjp:SJA_C1-01950 hypothetical protein YP_004554119.1 KEGG: sjp:SJA_C1-01940 hypothetical protein YP_004554120.1 PFAM: Peptidase U62, modulator of DNA gyrase; KEGG: sjp:SJA_C1-01930 putative Zn-dependent protease TldD YP_004554121.1 PFAM: Protein of unknown function DUF924, bacterial; KEGG: sjp:SJA_C1-01920 hypothetical protein YP_004554122.1 PFAM: Nitrogen regulatory protein PII; KEGG: sjp:SJA_C1-01910 nitrogen regulatory protein P-II 1 YP_004554123.1 KEGG: sjp:SJA_C1-01900 Amt-family ammonium transporter; TIGRFAM: Ammonium transporter; PFAM: Ammonium transporter YP_004554124.1 KEGG: sjp:SJA_C1-01890 phytoene/squalene synthetase; PFAM: Squalene/phytoene synthase YP_004554125.1 KEGG: sjp:SJA_C1-01590 putative nucleotide-binding protein; TIGRFAM: Conserved hypothetical protein CHP00730; PFAM: Conserved hypothetical protein CHP00730 YP_004554126.1 KEGG: sjp:SJA_C1-01600 zeta-carotene desaturase; TIGRFAM: Zeta-phytoene desaturase; PFAM: Amine oxidase YP_004554127.1 KEGG: sjp:SJA_C1-01610 putative lycopene beta cyclase; TIGRFAM: Lycopene cyclase; Lycopene cyclase, beta/epsilon; PFAM: Lycopene beta/epsilon cyclase YP_004554128.1 PFAM: Protein of unknown function DUF156; KEGG: sjp:SJA_C1-01630 hypothetical protein YP_004554129.1 KEGG: sjp:SJA_C1-01640 CDF-family cation efflux system protein; TIGRFAM: Cation efflux protein; PFAM: Cation efflux protein YP_004554131.1 KEGG: sjp:SJA_C1-01650 putative flavoprotein; TIGRFAM: HI0933-like protein; PFAM: HI0933-like protein YP_004554132.1 KEGG: sjp:SJA_C1-01660 hypothetical protein; TIGRFAM: Beta-lactamase hydrolase-like; PFAM: Beta-lactamase hydrolase-like YP_004554133.1 TIGRFAM: DNA helicase, ATP-dependent, RecQ type, bacterial; DNA helicase, ATP-dependent, RecQ type, N-terminal; PFAM: Helicase/RNase D C-terminal, HRDC domain; DNA/RNA helicase, DEAD/DEAH box type, N-terminal; DNA/RNA helicase, C-terminal; RQC domain; KEGG: sjp:SJA_C1-01670 ATP-dependent DNA helicase RecQ; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal; Helicase/RNase D C-terminal, HRDC domain YP_004554134.1 KEGG: sjp:SJA_C1-01680 hypothetical protein YP_004554135.1 PFAM: Beta-lactamase-related; KEGG: sjp:SJA_C1-01690 putative beta-lactamase class C YP_004554136.1 KEGG: sjp:SJA_C1-01700 phenazine biosynthesis protein; TIGRFAM: Phenazine biosynthesis PhzC/PhzF protein; PFAM: Phenazine biosynthesis PhzC/PhzF protein YP_004554137.1 TIGRFAM: Chorismate synthase; KEGG: sjp:SJA_C1-01730 chorismate synthase; PFAM: Chorismate synthase YP_004554138.1 KEGG: sjp:SJA_C1-01740 enoyl-[acyl-carrier-protein] reductase (NADH); PFAM: Short-chain dehydrogenase/reductase SDR YP_004554139.1 KEGG: sjp:SJA_C1-01750 putative ribonuclease BN; TIGRFAM: Ribonuclease BN; PFAM: Ribonuclease BN-related YP_004554140.1 KEGG: sjp:SJA_C1-01760 DnaJ-class molecular chaperone; PFAM: Heat shock protein DnaJ, N-terminal; Chaperone DnaJ, C-terminal; SMART: Heat shock protein DnaJ, N-terminal YP_004554141.1 PFAM: Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain; Pyridoxine 5'-phosphate oxidase, dimerisation, C-terminal; TIGRFAM: Pyridoxamine 5'-phosphate oxidase; HAMAP: Pyridoxamine 5'-phosphate oxidase; KEGG: sjp:SJA_C1-01770 pyridoxamine 5'-phosphate oxidase YP_004554142.1 PFAM: Transposase IS3/IS911; KEGG: sme:SM_b20918 transposase of insertion sequence ISRm1 orfA protein YP_004554143.1 KEGG: sme:SMa0444 TRm1b transposase; manually curated; PFAM: Integrase, catalytic core YP_004554144.1 PFAM: Sodium:dicarboxylate symporter; KEGG: sjp:SJA_C1-01780 dicarboxylate/amino acid:cation (Na+ or H+) symporter YP_004554145.1 KEGG: sjp:SJA_C1-01800 hypothetical protein YP_004554146.1 KEGG: sjp:SJA_C1-01810 adenylosuccinate synthase; PFAM: Adenylosuccinate synthetase; TIGRFAM: Adenylosuccinate synthetase; HAMAP: Adenylosuccinate synthetase; SMART: Adenylosuccinate synthetase YP_004554147.1 KEGG: sjp:SJA_C1-01820 hypothetical protein YP_004554148.1 PFAM: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved region; KEGG: sjp:SJA_C1-01830 ATP phosphoribosyltransferase regulatory subunit YP_004554149.1 TIGRFAM: D-3-phosphoglycerate dehydrogenase; KEGG: sjp:SJA_C1-01840 D-3-phosphoglycerate dehydrogenase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; Amino acid-binding ACT YP_004554150.1 TIGRFAM: Phosphoserine aminotransferase, Methanosarcina type; KEGG: sjp:SJA_C1-01850 phosphoserine aminotransferase; PFAM: Aminotransferase, class V/Cysteine desulfurase YP_004554151.1 PFAM: Extensin-like, C-terminal; KEGG: sjp:SJA_C1-01860 extensin-like protein YP_004554152.1 KEGG: sjp:SJA_C1-01870 putative nucleotide-binding protein; TIGRFAM: Conserved hypothetical protein CHP00730; PFAM: Conserved hypothetical protein CHP00730 YP_004554153.1 KEGG: sjp:SJA_C1-01580 putative hydrolase; TIGRFAM: Pyrimidine 5-nucleotidase; HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase-like hydrolase YP_004554154.1 TIGRFAM: 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase; HAMAP: 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase; KEGG: sjp:SJA_C1-01570 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase YP_004554155.1 PFAM: ABC transporter-like; ABC transporter, transmembrane region; KEGG: sjp:SJA_C1-01560 ATP-binding cassette protein; SMART: ATPase, AAA+ type, core YP_004554156.1 KEGG: sjp:SJA_C1-01550 tellurite resistance protein TerC; TIGRFAM: integral membrane protein, TerC family; PFAM: Integral membrane protein TerC YP_004554157.1 KEGG: sjp:SJA_C1-10950 putative MASP YP_004554158.1 PFAM: Thioesterase superfamily; KEGG: sjp:SJA_C1-01540 putative thioesterase YP_004554159.1 KEGG: sjp:SJA_C1-01530 oligopeptidase B; PFAM: Peptidase S9A, oligopeptidase, N-terminal beta-propeller; Peptidase S9, prolyl oligopeptidase, catalytic domain YP_004554160.1 PFAM: Peptidase M24, structural domain; Creatinase; KEGG: sjp:SJA_C1-01520 Xaa-Pro aminopeptidase YP_004554161.1 PFAM: Phasin; KEGG: sjp:SJA_C1-32570 phasin-family protein YP_004554162.1 KEGG: sjp:SJA_C1-32560 polyhydroxyalkanoate synthase; TIGRFAM: Poly(R)-hydroxyalkanoic acid synthase, class I; PFAM: Poly-beta-hydroxybutyrate polymerase, N-terminal; Alpha/beta hydrolase fold-1 YP_004554163.1 KEGG: sjp:SJA_C1-32550 putative aminotransferase; PFAM: Aminotransferase, class I/II YP_004554164.1 KEGG: sjp:SJA_C1-32540 hypothetical protein YP_004554165.1 KEGG: sjp:SJA_C1-32530 putative oxidoreductase; PFAM: [2Fe-2S]-binding; Ferredoxin YP_004554166.1 KEGG: sjp:SJA_C1-32520 catalytic LigB subunit of aromatic ring-opening dioxygenase; manually curated; PFAM: Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B YP_004554167.1 KEGG: sjp:SJA_C1-01510 hypothetical protein YP_004554170.1 TIGRFAM: DNA methylase, C-5 cytosine-specific; KEGG: rlg:Rleg_7069 DNA-cytosine methyltransferase; PFAM: DNA methylase, C-5 cytosine-specific YP_004554171.1 PFAM: Restriction endonuclease, type II, Eco29kI; KEGG: gbr:Gbro_0536 hypothetical protein YP_004554172.1 KEGG: deg:DehalGT_0234 hypothetical protein YP_004554173.1 PFAM: DNA primase/polymerase, bifunctional, N-terminal; KEGG: nha:Nham_2527 hypothetical protein YP_004554174.1 KEGG: nar:Saro_0306 phage integrase; manually curated; PFAM: Integrase, catalytic core, phage YP_004554175.1 KEGG: mlo:mlr0961 glycosyltransferase YP_004554176.1 PFAM: S1/P1 nuclease; KEGG: sjp:SJA_C1-33610 putative endonuclease YP_004554177.1 PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: swi:Swit_5132 TonB-dependent receptor YP_004554178.1 KEGG: sjp:SJA_C1-33640 xanthine dehydrogenase; PFAM: Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding; Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead YP_004554179.1 KEGG: sjp:SJA_C1-33650 xanthine dehydrogenase; PFAM: Molybdopterin dehydrogenase, FAD-binding YP_004554180.1 PFAM: [2Fe-2S]-binding; Ferredoxin; KEGG: sjp:SJA_C1-33660 xanthine dehydrogenase YP_004554181.1 manually curated; TIGRFAM: DNA mismatch endonuclease vsr; KEGG: mno:Mnod_4985 DNA mismatch endonuclease Vsr; PFAM: DNA mismatch endonuclease vsr YP_004554182.1 KEGG: alv:Alvin_1460 hypothetical protein YP_004554183.1 PFAM: Protein of unknown function DUF262; KEGG: alv:Alvin_1459 hypothetical protein YP_004554184.1 manually curated; TIGRFAM: DNA methylase, C-5 cytosine-specific; KEGG: bpl:BURPS1106A_3681 modification methylase HgiDII; PFAM: DNA methylase, C-5 cytosine-specific YP_004554185.1 KEGG: gbm:Gbem_3006 hypothetical protein YP_004554187.1 PFAM: Integrase, catalytic core, phage; KEGG: aba:Acid345_2069 phage integrase YP_004554188.1 TIGRFAM: Thiamine biosynthesis protein ThiC; HAMAP: Thiamine biosynthesis protein ThiC; KEGG: sjp:SJA_C1-33680 thiamine biosynthesis protein ThiC; PFAM: Thiamine biosynthesis protein ThiC YP_004554189.1 KEGG: sjp:SJA_C1-33690 hypothetical protein YP_004554190.1 KEGG: sjp:SJA_C1-33700 hypothetical protein YP_004554191.1 KEGG: sjp:SJA_C1-33850 cytochrome P450; PFAM: Cytochrome P450 YP_004554192.1 KEGG: sjp:SJA_C1-33840 hypothetical protein YP_004554193.1 KEGG: sjp:SJA_C1-33830 hypothetical protein YP_004554194.1 PFAM: DAHP synthetase I/KDSA; TIGRFAM: 3-deoxy-8-phosphooctulonate synthase; HAMAP: 3-deoxy-8-phosphooctulonate synthase; KEGG: sjp:SJA_C1-33820 2-dehydro-3-deoxyphosphooctonate aldolase YP_004554195.1 PFAM: Aldehyde dehydrogenase; TIGRFAM: Gamma-glutamyl phosphate reductase GPR; HAMAP: Glutamate-5-semialdehyde dehydrogenase; KEGG: sjp:SJA_C1-33790 glutamate-5-semialdehyde dehydrogenase YP_004554196.1 PFAM: Methyltransferase type 12; KEGG: sjp:SJA_C1-33780 putative phospholipid N-methyltransferase YP_004554197.1 KEGG: sjp:SJA_C1-33770 putative AAA family ATPase; PFAM: ATPase, AAA-type, core; ATPase, AAA-type, VAT, N-terminal; Cell division protein 48, CDC48, domain 2; manually curated; TIGRFAM: ATPase, AAA-type, CDC48; SMART: ATPase, AAA+ type, core YP_004554198.1 KEGG: sjp:SJA_C1-33760 LysR-family transcriptional regulator; manually curated; PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR YP_004554199.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate cyclase, predicted; KEGG: sjp:SJA_C1-33750 putative diguanylate cyclase; SMART: Diguanylate cyclase, predicted YP_004554200.1 PFAM: Glutathione S-transferase, N-terminal; Glutathione S-transferase, C-terminal; KEGG: sjp:SJA_C1-33740 glutathione S-transferase YP_004554201.1 PFAM: AMP-dependent synthetase/ligase; TIGRFAM: Acetate--CoA ligase; HAMAP: Acetyl-coenzyme A synthetase; KEGG: sjp:SJA_C1-33720 acetyl-CoA synthetase YP_004554202.1 KEGG: sjp:SJA_C1-33860 2-octaprenyl-6-methoxyphenol hydroxylase; TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6; PFAM: Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal YP_004554203.1 TIGRFAM: Branched-chain amino acid aminotransferase II; KEGG: sjp:SJA_C1-33870 branched-chain amino acid aminotransferase; PFAM: Aminotransferase, class IV YP_004554204.1 KEGG: sjp:SJA_C1-33880 threonine aldolase; PFAM: Aromatic amino acid beta-eliminating lyase/threonine aldolase YP_004554205.1 PFAM: Protein of unknown function DUF6, transmembrane; KEGG: sjp:SJA_C1-33890 putative permease YP_004554206.1 KEGG: sjp:SJA_C1-33900 hypothetical protein YP_004554207.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: sjp:SJA_C1-33910 putative NAD-dependent epimerase/dehydratase YP_004554208.1 KEGG: sjp:SJA_C1-33920 hypothetical protein; TIGRFAM: FeS cluster insertion; PFAM: FeS cluster biogenesis YP_004554209.1 KEGG: sjp:SJA_C1-33930 putative metal-sulfur cluster biosynthetic enzyme; TIGRFAM: SUF system FeS cluster assembly associated; PFAM: Protein of unknown function DUF59 YP_004554210.1 TIGRFAM: Cysteine desulfurase, SufS; KEGG: sjp:SJA_C1-33940 putative selenocysteine lyase; PFAM: Aminotransferase, class V/Cysteine desulfurase YP_004554211.1 PFAM: SUF system FeS cluster assembly, SufBD; KEGG: sjp:SJA_C1-33950 Fe-S cluster assembly protein SufD YP_004554212.1 KEGG: sjp:SJA_C1-33960 Fe-S cluster assembly ATP-binding protein SufC; TIGRFAM: ATPase SufC, SUF system FeS cluster assembly; PFAM: ABC transporter-like YP_004554213.1 KEGG: sjp:SJA_C1-33970 hypothetical protein YP_004554214.1 KEGG: sjp:SJA_C1-33990 Fe-S cluster assembly protein SufB; TIGRFAM: SUF system FeS cluster assembly, SufB; PFAM: SUF system FeS cluster assembly, SufBD YP_004554215.1 KEGG: sjp:SJA_C1-34000 BadM/Rrf2-family transcriptional regulator; TIGRFAM: Transcriptional regulator, Rrf2; PFAM: Transcriptional regulator, Rrf2 YP_004554216.1 SMART: Helix-turn-helix, AraC domain; KEGG: sjp:SJA_C1-34010 AraC-family transcriptional regulator YP_004554217.1 PFAM: Dihydroorotate dehydrogenase, class 1/ 2; TIGRFAM: Dihydroorotate dehydrogenase, class 2; HAMAP: Dihydroorotate dehydrogenase; KEGG: sjp:SJA_C1-34030 dihydroorotate oxidase YP_004554218.1 TIGRFAM: Gamma-glutamyltranspeptidase; KEGG: sjp:SJA_C1-34040 gamma-glutamyltranspeptidase; PFAM: Gamma-glutamyltranspeptidase YP_004554219.1 KEGG: sjp:SJA_C1-34050 hypothetical protein YP_004554220.1 PFAM: Fe-S metabolism associated SufE; KEGG: sjp:SJA_C1-34060 Fe-S cluster assembly protein SufE YP_004554221.1 KEGG: sjp:SJA_C1-34070 hypothetical protein YP_004554222.1 KEGG: sjp:SJA_C1-34080 hypothetical protein YP_004554223.1 KEGG: sjp:SJA_C1-34100 phage shock protein C; TIGRFAM: Phage shock protein C; PFAM: PspC YP_004554224.1 TIGRFAM: Phage shock B; KEGG: sjp:SJA_C1-34110 phage shock protein B YP_004554225.1 KEGG: sjp:SJA_C1-34120 phage shock protein A; TIGRFAM: Phage shock protein A; PFAM: PspA/IM30 YP_004554226.1 KEGG: sjp:SJA_C1-34130 hypothetical protein YP_004554227.1 TIGRFAM: Transcription activator PspF; PFAM: RNA polymerase sigma factor 54, interaction; Helix-turn-helix, Fis-type; KEGG: sjp:SJA_C1-34140 psp operon transcriptional activator; SMART: ATPase, AAA+ type, core YP_004554228.1 KEGG: sjp:SJA_C1-34150 3-hydroxybutyryl-CoA dehydrogenase; PFAM: 3-hydroxyacyl-CoA dehydrogenase, NAD binding; 3-hydroxyacyl-CoA dehydrogenase, C-terminal YP_004554229.1 KEGG: sjp:SJA_C1-34160 putative thioesterase; TIGRFAM: 4-hydroxybenzoyl-CoA thioesterase; PFAM: Thioesterase superfamily YP_004554230.1 KEGG: sjp:SJA_C1-34170 biopolymer transport protein TolQ; TIGRFAM: Tol-Pal system, TolQ; PFAM: MotA/TolQ/ExbB proton channel YP_004554231.1 KEGG: sjp:SJA_C1-34180 biopolymer transport protein TolR/ExbD; TIGRFAM: Biopolymer transport, TolR; PFAM: Biopolymer transport protein ExbD/TolR YP_004554232.1 KEGG: sjp:SJA_C1-34190 putative TolA YP_004554233.1 TIGRFAM: Tol-Pal system beta propeller repeat-containing protein, TolB; HAMAP: Tol-Pal system beta propeller repeat-containing protein, TolB; KEGG: sjp:SJA_C1-34200 TolB protein; PFAM: TolB, N-terminal; WD40-like Beta Propeller YP_004554234.1 KEGG: sjp:SJA_C1-34210 peptidoglycan-associated lipoprotein; TIGRFAM: Peptidoglycan-associated lipoprotein; PFAM: Outer membrane protein, OmpA/MotB, C-terminal YP_004554235.1 KEGG: sjp:SJA_C1-00490 hypothetical protein; manually curated; PFAM: Domain of unknown function DUF1993 YP_004554236.1 PFAM: Protein of unknown function DUF161; KEGG: sjp:SJA_C1-00500 hypothetical protein YP_004554237.1 KEGG: sjp:SJA_C1-00520 GntR-family transcriptional regulator; PFAM: HTH transcriptional regulator, GntR; Aminotransferase, class I/II; SMART: HTH transcriptional regulator, GntR YP_004554238.1 KEGG: sjp:SJA_C1-02490 heat shock protein HtpX; HAMAP: protease htpX; PFAM: Peptidase M48, Ste24p YP_004554239.1 PFAM: Protein of unknown function DUF1674; KEGG: sjp:SJA_C1-02480 hypothetical protein YP_004554240.1 KEGG: sjp:SJA_C1-02470 hypothetical protein YP_004554241.1 KEGG: sjp:SJA_C1-02460 UTP-glucose-1-phosphate uridylyltransferase; PFAM: Nucleotidyl transferase YP_004554242.1 PFAM: Protein of unknown function DUF541; KEGG: sjp:SJA_C1-03300 hypothetical protein YP_004554243.1 KEGG: sjp:SJA_C1-03290 lactoylglutathione lyase; manually curated; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase YP_004554244.1 KEGG: sjp:SJA_C1-03280 hydroxyacylglutathione hydrolase; TIGRFAM: Hydroxyacylglutathione hydrolase; HAMAP: Hydroxyacylglutathione hydrolase YP_004554245.1 KEGG: sjp:SJA_C1-03270 hypothetical protein YP_004554246.1 KEGG: sjp:SJA_C1-03260 long-chain fatty-acid-CoA ligase; PFAM: AMP-dependent synthetase/ligase YP_004554247.1 SMART: ATPase, AAA+ type, core; TIGRFAM: DNA helicase, Holliday junction RuvB type; KEGG: sjp:SJA_C1-01010 Holliday junction resolvasome helicase subunit; HAMAP: DNA helicase, Holliday junction RuvB type; PFAM: DNA helicase, Holliday junction RuvB type, C-terminal; ATPase, AAA-type, core; DNA helicase, Holliday junction RuvB type, N-terminal YP_004554248.1 TIGRFAM: Bacterial DNA recombination protein RuvA; HAMAP: Holliday junction ATP-dependent DNA helicase ruvA; KEGG: sjp:SJA_C1-00990 Holliday junction resolvasome DNA-binding subunit; PFAM: DNA helicase, Holliday junction RuvA type, domain I, bacterial; DNA helicase, Holliday junction RuvA type, domain III, C-terminal YP_004554249.1 KEGG: sjp:SJA_C1-00980 hypothetical protein YP_004554250.1 PFAM: Protein of unknown function DUF1345; KEGG: sjp:SJA_C1-00970 hypothetical protein YP_004554251.1 KEGG: sjp:SJA_C1-00960 putative protein-S-isoprenylcysteine methyltransferase YP_004554252.1 TIGRFAM: Glutamate--cysteine ligase, plant; KEGG: sjp:SJA_C1-00950 gamma-glutamylcysteine synthetase; PFAM: Glutamate--cysteine ligase, GCS2 YP_004554253.1 KEGG: sjp:SJA_C1-00940 hypothetical protein; TIGRFAM: Ribosomal RNA small subunit methyltransferase E; PFAM: Ribosomal RNA small subunit methyltransferase E YP_004554254.1 KEGG: sjp:SJA_C1-00930 4-hydroxybenzoate octaprenyltransferase; TIGRFAM: 4-hydroxybenzoate polyprenyl transferase; PFAM: UbiA prenyltransferase YP_004554255.1 KEGG: sjp:SJA_C1-00920 phospholipase D; PFAM: Phospholipase D/Transphosphatidylase; SMART: Phospholipase D/Transphosphatidylase YP_004554256.1 KEGG: sjp:SJA_C1-00910 chromosome segregation protein; TIGRFAM: Chromosome segregation protein SMC; PFAM: RecF/RecN/SMC protein, N-terminal YP_004554257.1 KEGG: sjp:SJA_C1-00900 protein-disulfide isomerase YP_004554258.1 KEGG: sjp:SJA_C1-00890 protein-disulfide isomerase YP_004554259.1 PFAM: Protein of unknown function DUF721; KEGG: sjp:SJA_C1-00870 hypothetical protein YP_004554260.1 KEGG: sjp:SJA_C1-00860 A/G-specific DNA glycosylase; PFAM: HhH-GPD domain; Endonuclease III-like, iron-sulphur cluster loop motif; SMART: HhH-GPD domain; Endonuclease III-like, iron-sulphur cluster loop motif YP_004554261.1 PFAM: NUDIX hydrolase domain; Zinc ribbon, NADH pyrophosphatase; NADH pyrophosphatase-like, N-terminal; KEGG: sjp:SJA_C1-00850 NADH pyrophosphatase YP_004554262.1 PFAM: Peptidase U62, modulator of DNA gyrase; KEGG: sjp:SJA_C1-00840 putative Zn-dependent protease PmbA YP_004554263.1 PFAM: Inositol monophosphatase; KEGG: sjp:SJA_C1-00830 inositol monophosphatase family protein YP_004554264.1 KEGG: sjp:SJA_C1-34480 hypothetical protein YP_004554265.1 PFAM: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; Phosphoribosylglycinamide synthetase, N-domain; Phosphoribosylglycinamide synthetase, C-domain; TIGRFAM: Phosphoribosylglycinamide synthetase; HAMAP: Phosphoribosylglycinamide synthetase; KEGG: sjp:SJA_C1-34470 phosphoribosylamine-glycine ligase YP_004554266.1 PFAM: Exonuclease VII, large subunit, C-terminal; Nucleic acid binding, OB-fold, tRNA/helicase-type; TIGRFAM: Exonuclease VII, large subunit; HAMAP: Exodeoxyribonuclease 7 large subunit; KEGG: sjp:SJA_C1-34460 exodeoxyribonuclease VII large subunit YP_004554267.1 PFAM: Protein of unknown function DUF2093; KEGG: sjp:SJA_C1-34450 hypothetical protein YP_004554268.1 PFAM: Peptidase M23; KEGG: sjp:SJA_C1-34440 putative metalloendopeptidase YP_004554269.1 PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: cak:Caul_3922 TonB-dependent receptor YP_004554270.1 TIGRFAM: Chaperonin ClpB; PFAM: ATPase associated with various cellular activities, AAA-2; ATPase, AAA-type, core; Clp, N-terminal; Clp ATPase, C-terminal; KEGG: sjp:SJA_C1-34400 ATP-dependent Clp protease ATP-binding subunit ClpB; SMART: ATPase, AAA+ type, core YP_004554271.1 PFAM: Peptidase M28; KEGG: sjp:SJA_C1-34390 putative aminopeptidase YP_004554272.1 PFAM: Peptidase M16, C-terminal; Peptidase M16, N-terminal; KEGG: sjp:SJA_C1-34380 putative Zn-dependent peptidase YP_004554273.1 KEGG: sjp:SJA_C1-34370 hypothetical protein YP_004554274.1 KEGG: sjp:SJA_C1-34360 MarR-family transcriptional regulator; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR YP_004554275.1 PFAM: Fusaric acid resistance protein conserved region; KEGG: sjp:SJA_C1-34250 fusaric acid resistance protein FusB/FusC YP_004554276.1 PFAM: Protein of unknown function DUF1656; KEGG: sjp:SJA_C1-34240 hypothetical protein YP_004554277.1 PFAM: Secretion protein HlyD; KEGG: sjp:SJA_C1-34230 HlyD-family secretion protein YP_004554278.1 KEGG: sjp:SJA_C1-34220 RND-family efflux transporter; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT; PFAM: Outer membrane efflux protein YP_004554279.1 KEGG: sjp:SJA_C1-03320 TPR repeat protein YP_004554280.1 PFAM: Alpha/beta hydrolase fold-1; KEGG: sjp:SJA_C1-03330 putative alpha/beta hydrolase YP_004554281.1 PFAM: Transposase, IS116/IS110/IS902; KEGG: smd:Smed_6452 transposase IS116/IS110/IS902 family protein YP_004554282.1 manually curated; KEGG: pzu:PHZ_c3135 oxidoreductase, short-chain dehydrogenase/reductase family; PFAM: Short-chain dehydrogenase/reductase SDR YP_004554283.1 KEGG: hne:HNE_0516 acyl-CoA dehydrogenase; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central region; Acyl-CoA dehydrogenase, N-terminal YP_004554284.1 KEGG: swi:Swit_3600 enoyl-CoA hydratase/isomerase; manually curated; PFAM: Crotonase, core YP_004554285.1 KEGG: sjp:SJA_C1-03950 acetyl-CoA acetyltransferase; TIGRFAM: Thiolase YP_004554286.1 KEGG: syf:Synpcc7942_1801 hypothetical protein; manually curated; PFAM: Alpha/beta hydrolase fold-1 YP_004554287.1 PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: hne:HNE_1466 putative TonB dependent receptor YP_004554288.1 PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA dehydrogenase, N-terminal; KEGG: bxe:Bxe_A1389 acyl-CoA dehydrogenase YP_004554289.1 KEGG: bgf:BC1003_1054 acyl-CoA dehydrogenase domain-containing protein; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central region; Acyl-CoA dehydrogenase, N-terminal YP_004554290.1 KEGG: hoh:Hoch_2339 3-hydroxyacyl-CoA dehydrogenase NAD-binding protein; PFAM: 3-hydroxyacyl-CoA dehydrogenase, NAD binding; Crotonase, core; 3-hydroxyacyl-CoA dehydrogenase, C-terminal YP_004554291.1 PFAM: Cytochrome P450; KEGG: rop:ROP_24420 cytochrome P450 YP_004554292.1 PFAM: Amidohydrolase 3; D-aminoacylase, C-terminal; KEGG: fri:FraEuI1c_3155 D-aminoacylase domain protein YP_004554293.1 PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: swi:Swit_4214 TonB-dependent receptor YP_004554294.1 PFAM: MaoC-like dehydratase; KEGG: vei:Veis_1582 dehydratase YP_004554295.1 PFAM: MaoC-like dehydratase; KEGG: vei:Veis_1584 dehydratase YP_004554296.1 KEGG: cak:Caul_0443 aldehyde dehydrogenase; PFAM: Aldehyde dehydrogenase YP_004554297.1 KEGG: citryl-CoA lyase; PFAM: HpcH/HpaI aldolase YP_004554298.1 KEGG: rme:Rmet_4420 L-carnitine dehydratase/bile acid-inducible protein F; PFAM: CoA-transferase family III YP_004554299.1 KEGG: pzu:PHZ_c3248 acyl-CoA dehydrogenase; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central region; Acyl-CoA dehydrogenase, N-terminal YP_004554300.1 PFAM: Crotonase, core; KEGG: pzu:PHZ_c3249 enoyl-CoA hydratase/isomerase YP_004554301.1 KEGG: mgi:Mflv_1778 molydopterin dinucleotide-binding region; PFAM: Molybdopterin oxidoreductase Fe4S4 region; Molybdopterin oxidoreductase; Molydopterin dinucleotide-binding region YP_004554302.1 KEGG: aba:Acid345_1381 aldehyde dehydrogenase (acceptor); PFAM: Aldehyde dehydrogenase YP_004554303.1 SMART: Pyrrolo-quinoline quinone beta-propeller repeat; TIGRFAM: PQQ-dependent dehydrogenase, methanol/ethanol family; KEGG: sjp:SJA_C2-04000 putative alcohol dehydrogenase; PFAM: PQQ-dependent enzyme, N-terminal; Pyrrolo-quinoline quinone repeat; PQQ-dependent enzyme, C-terminal; Cytochrome c, class I YP_004554304.1 PFAM: Luciferase-like, subgroup; KEGG: srt:Srot_1579 5,10-methylenetetrahydromethanopterin reductase YP_004554305.1 SMART: Elongator protein 3/MiaB/NifB; TIGRFAM: Complex F420, CofH; FO synthase, subunit 1; FO synthase, subunit 2; KEGG: pzu:PHZ_c2536 FO synthase; HAMAP: FO synthase subunit 1; PFAM: Radical SAM; Biotin/thiamin synthesis-associated protein YP_004554306.1 PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: swi:Swit_4214 TonB-dependent receptor YP_004554307.1 PFAM: Glutathione S-transferase, N-terminal; Glutathione S-transferase, C-terminal; KEGG: abb:ABBFA_001379 glutathione S-transferase, N-terminal domain protein YP_004554308.1 PFAM: 2-nitropropane dioxygenase, NPD; KEGG: dac:Daci_1401 2-nitropropane dioxygenase NPD YP_004554309.1 PFAM: Crotonase, core; KEGG: pla:Plav_0811 enoyl-CoA hydratase/isomerase YP_004554310.1 KEGG: acyl-CoA dehydrogenase domain-containing protein; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, central region YP_004554312.1 PFAM: Major facilitator superfamily MFS-1; KEGG: swi:Swit_3077 major facilitator transporter YP_004554313.1 PFAM: MmgE/PrpD; KEGG: vei:Veis_1585 MmgE/PrpD family protein YP_004554314.1 KEGG: swi:Swit_0718 reduced coenzyme F420:NADP oxidoreductase; TIGRFAM: NADPH-dependent F420 reductase; PFAM: NADP oxidoreductase, coenzyme F420-dependent YP_004554315.1 PFAM: F420-0:gamma-glutamyl ligase-related; KEGG: rpb:RPB_4408 hypothetical protein YP_004554316.1 KEGG: pzu:PHZ_c2039 ferredoxin-NADP reductase; PFAM: Oxidoreductase FAD/NAD(P)-binding; Oxidoreductase FAD-binding region YP_004554317.1 KEGG: pzu:PHZ_c0150 citrate lyase beta subunit; PFAM: HpcH/HpaI aldolase YP_004554318.1 KEGG: swi:Swit_2000 acetyl-CoA acetyltransferase; TIGRFAM: Thiolase YP_004554319.1 KEGG: pol:Bpro_3835 acyl-CoA dehydrogenase-like; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, central region YP_004554320.1 PFAM: Transcriptional regulator IclR, N-terminal; Transcriptional regulator IclR, C-terminal; KEGG: regulatory protein IclR YP_004554321.1 KEGG: pna:Pnap_4704 recombinase YP_004554322.1 PFAM: D-aminoacylase, C-terminal; Amidohydrolase 3; KEGG: fri:FraEuI1c_3155 D-aminoacylase domain protein YP_004554323.1 PFAM: Aminoglycoside phosphotransferase; KEGG: sjp:SJA_C2-02820 putative aminoglycoside phosphotransferase YP_004554324.1 KEGG: sal:Sala_0804 transposase, IS111A/IS1328/IS1533 YP_004554325.1 KEGG: sjp:SJA_C1-19510 Fe2+-dicitrate sensor membrane component; manually curated; PFAM: FecR protein YP_004554326.1 manually curated; TIGRFAM: RNA polymerase sigma-70; KEGG: sjp:SJA_C1-19500 ECF-type sigma factor; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2 YP_004554327.1 PFAM: TonB-dependent receptor, plug; Secretin/TonB, short N-terminal; TonB-dependent receptor, beta-barrel; KEGG: sjp:SJA_C2-01790 TonB-dependent receptor-like protein YP_004554328.1 PFAM: Peptidase M20, dimerisation; Peptidase M20; KEGG: dac:Daci_1258 peptidase dimerisation domain-containing protein YP_004554329.1 KEGG: swi:Swit_3265 ferredoxin; PFAM: Ferredoxin; Oxidoreductase FAD-binding region; Oxidoreductase FAD/NAD(P)-binding YP_004554330.1 PFAM: Rieske [2Fe-2S] iron-sulphur domain; KEGG: swi:Swit_3266 Rieske (2Fe-2S) domain-containing protein YP_004554331.1 KEGG: rhi:NGR_b09110 HipA-like protein; TIGRFAM: HipA, N-terminal; PFAM: HipA-like, C-terminal; HipA-like, N-terminal YP_004554332.1 KEGG: rhi:NGR_b09100 putative hth-type transcriptional regulator; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3 YP_004554333.1 PFAM: Protein of unknown function DUF1814; KEGG: cph:Cpha266_1224 hypothetical protein YP_004554334.1 KEGG: cph:Cpha266_1225 hypothetical protein YP_004554335.1 KEGG: sjp:SJA_C1-01250 putative autotransporter YapH; TIGRFAM: Outer membrane autotransporter barrel; Autotransporter-associated beta strand repeat; PFAM: Autotransporter beta-domain YP_004554336.1 KEGG: sjp:SJA_C1-09270 hypothetical protein YP_004554337.1 KEGG: sjp:SJA_C1-09280 hypothetical protein YP_004554338.1 PFAM: Uncharacterised conserved protein UCP033924; KEGG: sjp:SJA_C1-34630 hypothetical protein YP_004554339.1 HAMAP: DNA polymerase IV; KEGG: nar:Saro_2656 DNA polymerase IV; PFAM: DNA-repair protein, UmuC-like YP_004554340.1 PFAM: Protein of unknown function DUF177; KEGG: sjp:SJA_C1-34660 hypothetical protein YP_004554341.1 KEGG: sjp:SJA_C1-34670 putative ubiquinol-cytochrome c chaperone YP_004554342.1 PFAM: SmpA/OmlA; KEGG: sjp:SJA_C1-34680 putative small protein A YP_004554343.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: sjp:SJA_C1-34690 putative NAD-dependent epimerase/dehydratase YP_004554344.1 PFAM: ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type; KEGG: sjp:SJA_C1-34700 putative carbamoyl-phosphate synthase large subunit YP_004554345.1 PFAM: Metallophosphoesterase; KEGG: sjp:SJA_C1-34710 putative metallophosphoesterase YP_004554346.1 PFAM: Glycosyl transferase, group 1; KEGG: sjp:SJA_C1-34720 putative glycosyltransferase YP_004554347.1 PFAM: Sulfotransferase; KEGG: sjp:SJA_C1-34730 putative sulfotransferase protein YP_004554348.1 PFAM: Glycosyl transferase, group 1; KEGG: sjp:SJA_C1-34740 putative glycosyltransferase YP_004554349.1 PFAM: Protein of unknown function DUF2320; KEGG: sjp:SJA_C1-34750 hypothetical protein YP_004554350.1 PFAM: Polysaccharide export protein; Soluble ligand binding domain; KEGG: sjp:SJA_C1-34760 polysaccharide export outer membrane protein YP_004554351.1 PFAM: Sulfotransferase; KEGG: sjp:SJA_C1-34770 putative sulfotransferase protein YP_004554352.1 KEGG: sjp:SJA_C1-34780 putative UDP-bacillosamine synthetase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase YP_004554353.1 PFAM: Polysaccharide biosynthesis protein CapD-like; KEGG: sjp:SJA_C1-34790 putative nucleotide sugar epimerase/dehydratase YP_004554354.1 PFAM: Glycosyl transferase, group 1; KEGG: sjp:SJA_C1-34800 putative glycosyltransferase YP_004554355.1 PFAM: Bacterial sugar transferase; KEGG: sjp:SJA_C1-34810 putative undecaprenyl-phosphate galactosephosphotransferase YP_004554356.1 KEGG: sjp:SJA_C1-34820 putative methionyl-tRNA formyltransferase; PFAM: Formyl transferase, C-terminal; Formyl transferase, N-terminal YP_004554357.1 PFAM: N-acetylglucosaminyl phosphatidylinositol deacetylase; KEGG: sjp:SJA_C1-34830 LmbE-like protein YP_004554358.1 KEGG: sjp:SJA_C1-34840 CheY-like response regulator; PFAM: Transcription regulator LuxR, C-terminal; Signal transduction response regulator, receiver region; SMART: Transcription regulator LuxR, C-terminal YP_004554359.1 PFAM: Polysaccharide biosynthesis protein; KEGG: sjp:SJA_C1-34850 putative polysaccharide transporter YP_004554360.1 KEGG: sjp:SJA_C1-34950 CheY-like response regulator; PFAM: Transcription regulator LuxR, C-terminal; SMART: Transcription regulator LuxR, C-terminal YP_004554361.1 PFAM: Lipopolysaccharide biosynthesis; KEGG: sjp:SJA_C1-34940 putative succinoglycan biosynthesis transport protein ExoP YP_004554362.1 KEGG: sjp:SJA_C1-34930 hypothetical protein YP_004554363.1 KEGG: sjp:SJA_C1-34920 hypothetical protein YP_004554364.1 KEGG: sjp:SJA_C1-34910 putative sulfotransferase protein YP_004554365.1 KEGG: sjp:SJA_C1-34900 putative pectate lyase YP_004554366.1 PFAM: Glycosyl transferase, group 1; KEGG: sjp:SJA_C1-34890 putative glycosyltransferase YP_004554367.1 KEGG: sjp:SJA_C1-34860 putative Ca2+-binding hemolysin; PFAM: Cadherin; Haemolysin-type calcium-binding region; SMART: Cadherin YP_004554368.1 PFAM: Flavin reductase-like, FMN-binding; KEGG: sjp:SJA_C1-34960 flavin reductase-like protein YP_004554369.1 KEGG: sno:Snov_4233 F420-dependent oxidoreductase; TIGRFAM: F420-0:gamma-glutamyl ligase; PFAM: F420-0:gamma-glutamyl ligase-related YP_004554370.1 TIGRFAM: LPPG:Fo 2-phospho-L-lactate transferase; HAMAP: LPPG:FO 2-phospho-L-lactate transferase; KEGG: sno:Snov_4232 LPPG domain protein containing protein; PFAM: LPPG:FO 2-phospho-L-lactate transferase CofD/UPF0052 YP_004554371.1 KEGG: rxy:Rxyl_0959 hypothetical protein; TIGRFAM: Coenzyme F420, CofC; PFAM: Coenzyme F420, CofC YP_004554372.1 PFAM: Malic enzyme, NAD-binding; Malic enzyme, N-terminal; Phosphate acetyl/butaryl transferase; KEGG: sjp:SJA_C1-35000 malate dehydrogenase YP_004554373.1 SMART: DNA mismatch repair protein MutS, C-terminal; DNA mismatch repair protein MutS, core; TIGRFAM: DNA mismatch repair protein MutS, type 1; KEGG: sjp:SJA_C1-35010 DNA mismatch repair protein MutS; HAMAP: DNA mismatch repair protein MutS, type 1; PFAM: DNA mismatch repair protein MutS, C-terminal; DNA mismatch repair protein MutS-like, N-terminal; DNA mismatch repair protein MutS, connector; DNA mismatch repair protein MutS, core; DNA mismatch repair protein MutS, clamp YP_004554374.1 KEGG: sjp:SJA_C1-35020 [protein-PII] uridylyltransferas; PFAM: PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase; Nucleotidyltransferase; Metal-dependent phosphohydrolase, HD region, subdomain; Amino acid-binding ACT; TIGRFAM: Protein-PII uridylyltransferase; HAMAP: Protein-PII uridylyltransferase; SMART: Metal-dependent phosphohydrolase, HD region YP_004554375.1 PFAM: YkuD domain; KEGG: sjp:SJA_C1-35050 hypothetical protein YP_004554376.1 PFAM: GTP cyclohydrolase II; TIGRFAM: GTP cyclohydrolase II; HAMAP: GTP cyclohydrolase-2; KEGG: sjp:SJA_C1-35060 GTP cyclohydrolase II YP_004554377.1 KEGG: sjp:SJA_C1-35070 exodeoxyribonuclease III; TIGRFAM: Exodeoxyribonuclease III xth; PFAM: Endonuclease/exonuclease/phosphatase YP_004554378.1 PFAM: Outer membrane lipoprotein carrier protein LolA; KEGG: sjp:SJA_C1-35090 outer membrane lipoprotein carrier protein LolA YP_004554379.1 PFAM: Cell divisionFtsK/SpoIIIE; DNA translocase ftsK gamma; KEGG: sjp:SJA_C1-35190 DNA segregation ATPase FtsK YP_004554381.1 PFAM: GCN5-related N-acetyltransferase; KEGG: sjp:SJA_C1-35200 diamine N-acetyltransferase YP_004554382.1 PFAM: Protein of unknown function DUF6, transmembrane; KEGG: sjp:SJA_C1-35210 putative permease YP_004554383.1 TIGRFAM: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type; HAMAP: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type; KEGG: sjp:SJA_C1-35220 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; PFAM: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type YP_004554384.1 PFAM: Membrane protein, aromatic hydrocarbon degradation; KEGG: sjp:SJA_C1-35230 long-chain fatty acid transport protein YP_004554385.1 KEGG: sjp:SJA_C1-35240 phosphomannomutase; PFAM: Alpha-D-phosphohexomutase, alpha/beta/alpha domain II; Alpha-D-phosphohexomutase, alpha/beta/alpha domain I; Alpha-D-phosphohexomutase, alpha/beta/alpha domain III; Alpha-D-phosphohexomutase, C-terminal YP_004554386.1 KEGG: sjp:SJA_C1-35250 DnaJ-class molecular chaperone; PFAM: Heat shock protein DnaJ, N-terminal; SMART: Heat shock protein DnaJ, N-terminal YP_004554387.1 KEGG: sjp:SJA_C1-35260 ParA-like protein; manually curated; PFAM: ATPase MipZ YP_004554388.1 TIGRFAM: Pantoate-beta-alanine ligase; HAMAP: Pantoate-beta-alanine ligase; KEGG: sjp:SJA_C1-35270 pantoate-beta-alanine ligase; PFAM: Pantoate-beta-alanine ligase YP_004554389.1 PFAM: Uncharacterised protein family UPF0093; KEGG: sjp:SJA_C1-35280 hypothetical protein YP_004554390.1 PFAM: Uroporphyrinogen decarboxylase (URO-D); TIGRFAM: Uroporphyrinogen decarboxylase HemE; HAMAP: Uroporphyrinogen decarboxylase HemE; KEGG: sjp:SJA_C1-35290 uroporphyrinogen decarboxylase YP_004554391.1 KEGG: sjp:SJA_C1-00010 hypothetical protein; HAMAP: Protein of unknown function DUF299, phosphotransferase, predicted; PFAM: Protein of unknown function DUF299, phosphotransferase, predicted YP_004554392.1 KEGG: sjp:SJA_C1-00020 Maf-like protein; HAMAP: Maf-like protein; PFAM: Maf-like protein YP_004554393.1 TIGRFAM: Quinate/shikimate 5-dehydrogenase; HAMAP: Shikimate dehydrogenase; KEGG: sjp:SJA_C1-00030 shikimate 5-dehydrogenase; PFAM: Shikimate dehydrogenase substrate binding, N-terminal; Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase YP_004554394.1 TIGRFAM: Dephospho-CoA kinase; HAMAP: Dephospho-CoA kinase; KEGG: sjp:SJA_C1-00040 dephospho-CoA kinase YP_004554395.1 SMART: Exonuclease; TIGRFAM: DNA polymerase 3, epsilon subunit; DNA polymerase III, epsilon subunit; KEGG: sjp:SJA_C1-00050 DNA polymerase III epsilon subunit; PFAM: Exonuclease, RNase T/DNA polymerase III YP_004554396.1 KEGG: sjp:SJA_C1-00060 sigma 54; TIGRFAM: Ribosomal protein S30Ae/sigma 54 modulation protein; PFAM: Ribosomal protein S30Ae/sigma 54 modulation protein YP_004554397.1 PFAM: Phosphotransferase system, phosphoenolpyruvate-dependent sugar EIIA 2; KEGG: sjp:SJA_C1-00070 PTS system nitrogen regulatory IIA component YP_004554398.1 manually curated; TIGRFAM: Phenylacetic acid degradation-related protein; KEGG: sjp:SJA_C1-00080 hypothetical protein; PFAM: Thioesterase superfamily YP_004554399.1 PFAM: Protein of unknown function DUF1491; KEGG: sjp:SJA_C1-00090 hypothetical protein YP_004554400.1 PFAM: Cell wall hydrolase, SleB; KEGG: sjp:SJA_C1-00100 N-acetylmuramoyl-L-alanine amidase YP_004554401.1 PFAM: Protein of unknown function DUF1052; KEGG: sjp:SJA_C1-00110 hypothetical protein YP_004554402.1 HAMAP: UPF0176 protein yceA; PFAM: Rhodanese-like; KEGG: sjp:SJA_C1-00160 putative sulfurtransferase; SMART: Rhodanese-like YP_004554403.1 KEGG: sjp:SJA_C1-00150 putative ICC-like phosphoesterase YP_004554404.1 PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: sjp:SJA_C1-00140 TonB-dependent receptor-like protein YP_004554405.1 KEGG: sjp:SJA_C1-00130 hypothetical protein; TIGRFAM: pyridoxal phosphate-dependent enzyme, YBL036C type; PFAM: Alanine racemase, N-terminal YP_004554406.1 PFAM: Thiamine monophosphate synthase; KEGG: sjp:SJA_C1-00120 thiamine monophosphate synthase YP_004554407.1 KEGG: sjp:SJA_C1-00440 hypothetical protein YP_004554408.1 KEGG: sjp:SJA_C1-00430 hypothetical protein YP_004554409.1 TIGRFAM: Leucyl-tRNA synthetase, class Ia, bacterial/mitochondrial; KEGG: sjp:SJA_C1-00420 leucyl-tRNA synthetase YP_004554410.1 PFAM: Protein of unknown function DUF2159, secreted; KEGG: sjp:SJA_C1-00410 hypothetical protein YP_004554411.1 TIGRFAM: DNA polymerase III, delta subunit; KEGG: sjp:SJA_C1-00400 DNA polymerase III delta subunit YP_004554412.1 PFAM: Methionine sulphoxide reductase B; TIGRFAM: Methionine sulphoxide reductase B; HAMAP: Peptide methionine sulfoxide reductase msrB; KEGG: sjp:SJA_C1-00390 peptide-methionine (R)-S-oxide reductase YP_004554413.1 TIGRFAM: Penicillin-binding protein 1A; KEGG: sjp:SJA_C1-00380 penicillin-binding protein; PFAM: Glycosyl transferase, family 51; Penicillin-binding protein, transpeptidase YP_004554414.1 KEGG: sjp:SJA_C1-00370 hypothetical protein YP_004554415.1 TIGRFAM: Transcription termination factor Rho; PFAM: ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain; Rho termination factor, RNA-binding; Rho termination factor, N-terminal; KEGG: sjp:SJA_C1-00360 transcription termination factor; SMART: Cold shock protein; ATPase, AAA+ type, core YP_004554416.1 KEGG: sjp:SJA_C1-00350 tellurite resistance protein TerC; TIGRFAM: integral membrane protein, YjbE family; PFAM: Integral membrane protein TerC YP_004554417.1 PFAM: Phytanoyl-CoA dioxygenase; KEGG: sjp:SJA_C1-00340 hypothetical protein YP_004554418.1 KEGG: sjp:SJA_C1-00330 NADPH2:quinone reductase; PFAM: Alcohol dehydrogenase, zinc-binding; Alcohol dehydrogenase GroES-like YP_004554419.1 KEGG: sjp:SJA_C1-00320 carboxymethylenebutenolidase; PFAM: Dienelactone hydrolase YP_004554420.1 KEGG: sjp:SJA_C1-00310 hypothetical protein YP_004554421.1 TIGRFAM: tRNA modification GTPase TrmE; Small GTP-binding protein; HAMAP: tRNA modification GTPase TrmE; KEGG: sjp:SJA_C1-00300 tRNA modification GTPase; PFAM: GTP-binding protein TrmE, N-terminal; GTP-binding protein, HSR1-related YP_004554422.1 TIGRFAM: Glucose-inhibited division protein A; HAMAP: Glucose-inhibited division protein A; KEGG: sjp:SJA_C1-00290 NAD/FAD-utilizing enzyme apparently involved in cell division; PFAM: Glucose-inhibited division protein A-related YP_004554423.1 TIGRFAM: rRNA small subunit methyltransferase G; HAMAP: rRNA small subunit methyltransferase G; KEGG: sjp:SJA_C1-00280 putative S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division; PFAM: rRNA small subunit methyltransferase G YP_004554424.1 PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: sjp:SJA_C1-00270 chromosome partitioning protein ParA YP_004554425.1 TIGRFAM: ParB-like partition protein; PFAM: ParB-like nuclease; KEGG: sjp:SJA_C1-00260 ParB-like protein; SMART: ParB-like nuclease YP_004554426.1 TIGRFAM: Peptidase M1, alanyl aminopeptidase; KEGG: sjp:SJA_C1-00250 aminopeptidase N; PFAM: Peptidase M1, membrane alanine aminopeptidase, N-terminal YP_004554427.1 PFAM: Protein of unknown function DUF330; KEGG: sjp:SJA_C1-00240 ABC-type transport system auxiliary component (lipoprotein) YP_004554428.1 PFAM: Mammalian cell entry related; KEGG: sjp:SJA_C1-00230 ABC-type transport system periplasmic component LinM YP_004554429.1 PFAM: ABC transporter-like; KEGG: sjp:SJA_C1-00220 ABC-type transport system ATPase component LinL; SMART: ATPase, AAA+ type, core YP_004554430.1 KEGG: sjp:SJA_C1-00210 ABC-type transport system permease component LinK; TIGRFAM: Protein of unknown function DUF140; PFAM: Protein of unknown function DUF140; Sulphate transporter/antisigma-factor antagonist STAS YP_004554431.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IB, PSPase-like, bacterial; HAD-superfamily hydrolase, subfamily IB, PSPase-like; KEGG: sjp:SJA_C1-00200 phosphoserine phosphatase YP_004554432.1 KEGG: sjp:SJA_C1-00190 putative dehydrogenase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region YP_004554433.1 PFAM: Cys/Met metabolism, pyridoxal phosphate-dependent enzyme; KEGG: sjp:SJA_C1-00180 cystathionine beta-lyase/cystathionine gamma-synthase YP_004554434.1 KEGG: sjp:SJA_C1-00170 Lhr-like helicase; PFAM: DEAD/H associated; DNA/RNA helicase, DEAD/DEAH box type, N-terminal; DNA/RNA helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal YP_004554435.1 KEGG: sjp:SJA_C1-00450 hypothetical protein YP_004554436.1 TIGRFAM: DNA-3-methyladenine glycosylase I; KEGG: sjp:SJA_C1-00460 DNA-3-methyladenine glycosylase I; PFAM: Methyladenine glycosylase YP_004554437.1 TIGRFAM: DNA gyrase, subunit B; PFAM: DNA topoisomerase, type IIA, subunit B, region 2; ATP-binding region, ATPase-like; Toprim domain; DNA topoisomerase, type IIA, subunit B, C-terminal; KEGG: sjp:SJA_C1-00470 DNA gyrase subunit B; SMART: DNA topoisomerase, type IIA, subunit B or N-terminal; ATP-binding region, ATPase-like YP_004554438.1 KEGG: sjp:SJA_C1-00480 hypothetical protein YP_004554439.1 PFAM: Heparinase II/III-like; KEGG: sjp:SJA_C1-02500 hypothetical protein YP_004554440.1 TIGRFAM: Ribulose-phosphate 3-epimerase; KEGG: sjp:SJA_C1-02510 ribulose-phosphate 3-epimerase; PFAM: Ribulose-phosphate 3-epimerase YP_004554441.1 KEGG: sjp:SJA_C1-02520 PAS/PAC domain protein YP_004554442.1 PFAM: Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p; NusB/RsmB/TIM44; KEGG: sjp:SJA_C1-02530 tRNA/rRNA cytosine-C5-methylase YP_004554443.1 PFAM: Protein of unknown function DUF482; KEGG: sjp:SJA_C1-00770 hypothetical protein YP_004554444.1 PFAM: Glycerophosphoryl diester phosphodiesterase; KEGG: sjp:SJA_C1-00780 glycerophosphoryl diester phosphodiesterase YP_004554445.1 PFAM: Endoribonuclease L-PSP; KEGG: sjp:SJA_C1-00790 YjgF-family protein YP_004554446.1 KEGG: sjp:SJA_C1-00800 hypothetical protein YP_004554447.1 KEGG: sjp:SJA_C1-00810 hypothetical protein YP_004554448.1 KEGG: sjp:SJA_C1-00820 CheY-like response regulator; PFAM: Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region YP_004554449.1 HAMAP: Inorganic pyrophosphatase; KEGG: sjp:SJA_C1-00600 inorganic pyrophosphatase; PFAM: Inorganic pyrophosphatase YP_004554450.1 PFAM: Peptidase M61; KEGG: sjp:SJA_C1-00610 trypsin-like serine protease YP_004554451.1 PFAM: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved region; TIGRFAM: Histidyl-tRNA synthetase, class IIa, subgroup; HAMAP: Histidyl-tRNA synthetase, class IIa, subgroup; KEGG: sjp:SJA_C1-00620 histidyl-tRNA synthetase YP_004554452.1 TIGRFAM: Peptide chain release factor 1; HAMAP: Peptide chain release factor 1; KEGG: sjp:SJA_C1-00630 peptide chain release factor RF-1; PFAM: Class I peptide chain release factor; Peptide chain release factor YP_004554453.1 KEGG: sjp:SJA_C1-00640 methylase of polypeptide chain release factors; TIGRFAM: Protein-(glutamine-N5) methyltransferase, release factor-specific; Modification methylase HemK; PFAM: Methyltransferase small YP_004554454.1 KEGG: sjp:SJA_C1-00650 hypothetical protein YP_004554455.1 KEGG: sjp:SJA_C1-00660 hypothetical protein YP_004554456.1 PFAM: Thioesterase superfamily; KEGG: sjp:SJA_C1-00670 acyl-CoA hydrolase YP_004554457.1 KEGG: sjp:SJA_C1-00680 hypothetical protein YP_004554458.1 KEGG: sjp:SJA_C1-00690 CBS domain protein; PFAM: Cystathionine beta-synthase, core; SMART: Cystathionine beta-synthase, core YP_004554459.1 PFAM: Polysaccharide biosynthesis protein; KEGG: sjp:SJA_C1-00700 hypothetical protein YP_004554460.1 KEGG: sjp:SJA_C1-00710 hypothetical protein; TIGRFAM: Multi-copper polyphenol oxidoreductase, laccase; PFAM: Multi-copper polyphenol oxidoreductase, laccase YP_004554461.1 PFAM: Amino acid permease-associated region; KEGG: sjp:SJA_C1-00720 putative amino acid transporter YP_004554462.1 manually curated; TIGRFAM: Drug resistance transporter Bcr/CflA subfamily; KEGG: sjp:SJA_C1-00730 putative MFS permease; PFAM: Major facilitator superfamily MFS-1 YP_004554463.1 KEGG: sjp:SJA_C1-00740 Sel1-like TPR repeat protein; PFAM: Sel1-like; SMART: Sel1-like YP_004554464.1 KEGG: sjp:SJA_C1-02950 2,4-dienoyl-CoA reductase (NADPH2); PFAM: NADH:flavin oxidoreductase/NADH oxidase, N-terminal YP_004554465.1 KEGG: sjp:SJA_C1-02960 hypothetical protein; TIGRFAM: Ubiquinone biosynthesis protein COQ9; PFAM: COQ9 YP_004554466.1 PFAM: Ferrous iron transporter, FeoA subunit; KEGG: sjp:SJA_C1-02970 Fe2+ transport system protein A YP_004554467.1 KEGG: sjp:SJA_C1-02980 Fe2+ transport system protein B; TIGRFAM: Ferrous iron transport protein B; Small GTP-binding protein; PFAM: GTP-binding protein, HSR1-related; Ferrous iron transport protein B, N-terminal; Nucleoside recognition; Ferrous iron transport protein B, C-terminal YP_004554468.1 KEGG: sjp:SJA_C1-02990 single-stranded DNA-binding protein; TIGRFAM: Single-strand DNA-binding; PFAM: Primosome PriB/single-strand DNA-binding YP_004554469.1 KEGG: sjp:SJA_C1-32300 hypothetical protein YP_004554470.1 PFAM: Endoribonuclease L-PSP; KEGG: sjp:SJA_C1-32310 YjgF-family protein YP_004554471.1 KEGG: sjp:SJA_C1-32320 ArsC-family protein; TIGRFAM: Conserved hypothetical protein, ArsC related; PFAM: Arsenate reductase-like YP_004554472.1 PFAM: Glycerophosphoryl diester phosphodiesterase; KEGG: sjp:SJA_C1-32330 glycerophosphoryl diester phosphodiesterase YP_004554473.1 KEGG: sjp:SJA_C1-32340 BadM-family transcriptional regulator; TIGRFAM: Transcriptional regulator, Rrf2; PFAM: Transcriptional regulator, Rrf2 YP_004554474.1 KEGG: sjp:SJA_C1-32350 beta-lactamase-like protein YP_004554475.1 KEGG: sjp:SJA_C1-32360 GST-related protein YP_004554476.1 TIGRFAM: Ribosomal protein L32p; HAMAP: Ribosomal protein L32p; KEGG: sal:Sala_1420 50S ribosomal protein L32; PFAM: Ribosomal protein L32p YP_004554477.1 PFAM: Fatty acid synthesis plsX protein; manually curated; KEGG: sjp:SJA_C1-32380 fatty acid/phospholipid synthesis protein; TIGRFAM: Phospholipid biosynthesis protein, PlsX like; HAMAP: Phospholipid biosynthesis protein, PlsX like YP_004554478.1 PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; TIGRFAM: Beta-ketoacyl-acyl carrier protein synthase III (FabH); HAMAP: Beta-ketoacyl-acyl carrier protein synthase III (FabH); KEGG: sjp:SJA_C1-32390 3-oxoacyl-[acyl-carrier-protein] synthase III YP_004554479.1 KEGG: sjp:SJA_C1-03000 phosphoribosylaminoimidazolecarboxamide formyltransferase; PFAM: AICARFT/IMPCHase bienzyme, formylation region; MGS-like; TIGRFAM: AICARFT/IMPCHase bienzyme; HAMAP: Bifunctional purine biosynthesis protein purH; SMART: AICARFT/IMPCHase bienzyme, formylation region YP_004554480.1 KEGG: sjp:SJA_C1-03020 hypothetical protein YP_004554481.1 PFAM: FAD dependent oxidoreductase; KEGG: sjp:SJA_C1-03030 putative oxidase YP_004554482.1 KEGG: sjp:SJA_C1-03040 hypothetical protein YP_004554483.1 KEGG: sjp:SJA_C1-03050 hypothetical protein YP_004554484.1 TIGRFAM: Methionine sulphoxide reductase B; Twin-arginine translocation pathway, signal sequence; KEGG: sjp:SJA_C1-03060 peptide-methionine (R)-S-oxide reductase; PFAM: Methionine sulphoxide reductase B YP_004554485.1 KEGG: sjp:SJA_C1-03070 ABC-type transport system permease component YP_004554486.1 PFAM: ABC transporter-like; KEGG: sjp:SJA_C1-03080 ABC-type transport system ATPase component; SMART: ATPase, AAA+ type, core YP_004554487.1 PFAM: Domain of unknown function DUF1730; KEGG: sjp:SJA_C1-03090 putative Fe-S protein YP_004554488.1 KEGG: sjp:SJA_C1-03100 hypothetical protein YP_004554489.1 KEGG: sjp:SJA_C1-03110 hypothetical protein YP_004554490.1 PFAM: Carbohydrate/purine kinase; KEGG: sjp:SJA_C1-03120 ribokinase family sugar kinase YP_004554491.1 PFAM: Polysaccharide biosynthesis protein; KEGG: sjp:SJA_C1-03130 putative polysaccharide transporter YP_004554492.1 KEGG: sjp:SJA_C1-03140 glycerol-3-phosphate dehydrogenase (NAD(P)+); HAMAP: Glycerol-3-phosphate dehydrogenase [NAD(P)+]; PFAM: NAD-dependent glycerol-3-phosphate dehydrogenase, N-terminal; NAD-dependent glycerol-3-phosphate dehydrogenase, C-terminal YP_004554493.1 PFAM: Peptidase M22, glycoprotease; TIGRFAM: putative glycoprotease GCP; Peptidase M22, glycoprotease, subgroup; HAMAP: O-sialoglycoprotein endopeptidase; KEGG: sjp:SJA_C1-03150 O-sialoglycoprotein endopeptidase YP_004554494.1 TIGRFAM: Tetrapyrrole biosynthesis, hydroxymethylbilane synthase; HAMAP: Porphobilinogen deaminase; KEGG: sjp:SJA_C1-03160 hydroxymethylbilane synthase; PFAM: Tetrapyrrole biosynthesis, hydroxymethylbilane synthase YP_004554495.1 PFAM: Tetrapyrrole biosynthesis, uroporphyrinogen III synthase; KEGG: sjp:SJA_C1-03170 uroporphyrinogen-III synthase YP_004554496.1 KEGG: sjp:SJA_C1-03180 hypothetical protein YP_004554497.1 PFAM: Alpha/beta hydrolase fold-1; KEGG: sjp:SJA_C1-03190 hypothetical protein YP_004554498.1 TIGRFAM: Glutamyl-tRNA synthetase, class Ic, bacterial/mitochondrial; KEGG: sjp:SJA_C1-03200 glutamyl-tRNA synthetase; PFAM: Glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain YP_004554499.1 TIGRFAM: NAD+ synthase; KEGG: sjp:SJA_C1-03210 NAD+ synthase (glutamine-hydrolyzing); PFAM: NAD+ synthase; Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_004554500.1 TIGRFAM: Phosphoribosyl pyrophosphokinase; KEGG: sjp:SJA_C1-03220 ribose-phosphate pyrophosphokinase; PFAM: Phosphoribosyltransferase YP_004554501.1 KEGG: sjp:SJA_C1-03230 hypothetical protein YP_004554502.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sjp:SJA_C1-03240 glyoxalase-family protein YP_004554503.1 KEGG: sjp:SJA_C1-03250 putative fructose-1,6-bisphosphatase; TIGRFAM: Histidinol-phosphate phosphatase, putative, inositol monophosphatase; PFAM: Inositol monophosphatase YP_004554504.1 TIGRFAM: Ribosomal protein L35; HAMAP: Ribosomal protein L35; KEGG: sjp:SJA_C1-34520 ribosomal protein L35; PFAM: Ribosomal protein L35 YP_004554505.1 TIGRFAM: Ribosomal protein L20; HAMAP: Ribosomal protein L20; KEGG: sjp:SJA_C1-34530 ribosomal protein L20; PFAM: Ribosomal protein L20 YP_004554506.1 PFAM: Excinuclease ABC, C subunit, N-terminal; KEGG: sjp:SJA_C1-34550 putative endonuclease YP_004554507.1 TIGRFAM: Phenylalanyl-tRNA synthetase, class IIc, alpha subunit; HAMAP: Phenylalanyl-tRNA synthetase alpha chain; KEGG: sjp:SJA_C1-34560 phenylalanyl-tRNA synthetase alpha chain; PFAM: Phenylalanyl-tRNA synthetase alpha chain; Phenylalanyl-tRNA synthetase, class II, N-terminal YP_004554508.1 TIGRFAM: Phenylalanyl-tRNA synthetase, class IIc, beta subunit, bacterial; HAMAP: Phenylalanyl-tRNA synthetase, class IIc, beta subunit, bacterial; KEGG: sjp:SJA_C1-34570 phenylalanyl-tRNA synthetase beta chain YP_004554509.1 KEGG: sjp:SJA_C1-34580 hypothetical protein YP_004554510.1 KEGG: sjp:SJA_C1-34590 hypothetical protein YP_004554511.1 PFAM: Aldose 1-epimerase; KEGG: sjp:SJA_C1-34600 putative galactose mutarotase YP_004554512.1 KEGG: sjp:SJA_C1-34610 peptide chain release factor RF-3; TIGRFAM: Peptide chain release factor 3; Small GTP-binding protein; PFAM: Protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, domain 2 YP_004554513.1 KEGG: sjp:SJA_C1-01240 SAM-dependent methyltransferase; TIGRFAM: Methionine biosynthesis MetW; PFAM: Methionine biosynthesis MetW YP_004554514.1 PFAM: Alpha/beta hydrolase fold-1; TIGRFAM: Homoserine O-acetyltransferase; HAMAP: Homoserine O-acetyltransferase; KEGG: sjp:SJA_C1-01230 homoserine O-acetyltransferase YP_004554515.1 KEGG: sjp:SJA_C1-01220 putative dehydrogenase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region YP_004554516.1 PFAM: Aminotransferase, class I/II; TIGRFAM: Histidinol-phosphate aminotransferase; HAMAP: Histidinol-phosphate aminotransferase; KEGG: sjp:SJA_C1-01210 histidinol-phosphate aminotransferase YP_004554517.1 KEGG: sjp:SJA_C1-01200 prephenate dehydrogenase; PFAM: Prephenate dehydrogenase YP_004554518.1 KEGG: sjp:SJA_C1-01190 1-acyl-sn-glycerol-3-phosphate acyltransferase; PFAM: Phospholipid/glycerol acyltransferase; SMART: Phospholipid/glycerol acyltransferase YP_004554519.1 PFAM: Protein of unknown function DUF218; KEGG: sjp:SJA_C1-01180 hypothetical protein YP_004554520.1 PFAM: Protein of unknown function DUF214, permase predicted; KEGG: sjp:SJA_C1-01170 cell division protein YP_004554521.1 SMART: ATPase, AAA+ type, core; TIGRFAM: Cell division ATP-binding protein FtsE; KEGG: sjp:SJA_C1-01160 putative ATPase involved in cell division; PFAM: ABC transporter-like YP_004554522.1 TIGRFAM: Zinc finger/thioredoxin putative; KEGG: sjp:SJA_C1-01150 hypothetical protein YP_004554523.1 PFAM: Pirin, N-terminal; Pirin, C-terminal; KEGG: sjp:SJA_C1-01140 pirin-related protein YP_004554524.1 PFAM: BolA-like protein; KEGG: sjp:SJA_C1-01120 BolA-like protein YP_004554525.1 KEGG: sjp:SJA_C1-01110 DnaJ-class molecular chaperone; PFAM: Heat shock protein DnaJ, N-terminal; SMART: Heat shock protein DnaJ, N-terminal YP_004554526.1 TIGRFAM: Cobalt chelatase, pCobS small subunit; KEGG: sjp:SJA_C1-01100 MoxR-like ATPase; PFAM: ATPase associated with various cellular activities, AAA-5 YP_004554527.1 PFAM: Peroxiredoxin, OsmC-like protein; KEGG: sjp:SJA_C1-01090 OsmC-like protein YP_004554528.1 KEGG: sjp:SJA_C1-01080 protein tyrosine/serine phosphatase YP_004554529.1 SMART: von Willebrand factor, type A; TIGRFAM: Cobalt chelatase, CobT subunit; KEGG: sjp:SJA_C1-01070 cobalamin biosynthesis protein; PFAM: Cobalt chelatase, CobT subunit YP_004554530.1 PFAM: Transcription elongation factor, GreA/GreB region, prokaryotic; KEGG: sjp:SJA_C1-01060 transcription elongation factor YP_004554531.1 PFAM: Ferritin/Dps protein; KEGG: sjp:SJA_C1-01050 starvation-inducible DNA-binding protein YP_004554532.1 KEGG: sjp:SJA_C1-01040 hypothetical protein YP_004554533.1 KEGG: sjp:SJA_C1-01030 hypothetical protein YP_004554534.1 KEGG: sjp:SJA_C1-01020 ribosomal protein L33; TIGRFAM: Ribosomal protein L33; PFAM: Ribosomal protein L33 YP_004554535.1 PFAM: 6,7-dimethyl-8-ribityllumazine synthase; TIGRFAM: 6,7-dimethyl-8-ribityllumazine synthase; HAMAP: 6,7-dimethyl-8-ribityllumazine synthase; KEGG: sjp:SJA_C1-02940 riboflavin synthase beta-chain YP_004554536.1 TIGRFAM: DHBP synthase RibB; HAMAP: 3,4-dihydroxy-2-butanone 4-phosphate synthase; KEGG: sjp:SJA_C1-02930 GTP cyclohydrolase II; PFAM: DHBP synthase RibB; GTP cyclohydrolase II YP_004554537.1 TIGRFAM: Lumazine-binding protein; KEGG: sjp:SJA_C1-02920 riboflavin synthase alpha-chain; PFAM: Lumazine-binding protein YP_004554538.1 TIGRFAM: Riboflavin biosynthesis protein RibD; KEGG: sjp:SJA_C1-02910 5-amino-6-(5-phosphoribosylamino)uracil reductase; PFAM: Bacterial bifunctional deaminase-reductase, C-terminal; CMP/dCMP deaminase, zinc-binding YP_004554539.1 KEGG: sjp:SJA_C1-02900 hypothetical protein YP_004554540.1 KEGG: sjp:SJA_C1-02890 TonB-like protein; TIGRFAM: TonB, C-terminal; PFAM: Gram-negative bacterial tonB protein YP_004554541.1 PFAM: Protein of unknown function DUF445, transmembrane; KEGG: sjp:SJA_C1-02880 hypothetical protein YP_004554542.1 PFAM: Acriflavin resistance protein; KEGG: sjp:SJA_C1-02870 hydrophobic/amphiphilic exporter-1 YP_004554543.1 KEGG: sjp:SJA_C1-02860 HlyD-family secretion protein; TIGRFAM: Secretion protein HlyD; PFAM: Biotin/lipoyl attachment YP_004554544.1 PFAM: Transglycosylase-associated protein; KEGG: sjp:SJA_C1-02850 hypothetical protein YP_004554545.1 PFAM: Transglycosylase-associated protein; KEGG: sjp:SJA_C1-02840 hypothetical protein YP_004554546.1 PFAM: Protein of unknown function DUF1153; KEGG: sjp:SJA_C1-02830 hypothetical protein YP_004554547.1 KEGG: sjp:SJA_C1-02820 hypothetical protein YP_004554548.1 TIGRFAM: tRNA-specific 2-thiouridylase; HAMAP: tRNA-specific 2-thiouridylase; KEGG: sjp:SJA_C1-02810 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; PFAM: tRNA methyl transferase-like YP_004554549.1 PFAM: ATP phosphoribosyltransferase, catalytic region; TIGRFAM: ATP phosphoribosyltransferase, catalytic region; HAMAP: ATP phosphoribosyltransferase; KEGG: sjp:SJA_C1-02800 ATP phosphoribosyltransferase YP_004554550.1 PFAM: Histidinol dehydrogenase, prokaryotic-type; TIGRFAM: Histidinol dehydrogenase, prokaryotic-type; HAMAP: Histidinol dehydrogenase, prokaryotic-type; KEGG: sjp:SJA_C1-02790 histidinol dehydrogenase YP_004554551.1 TIGRFAM: NusB antitermination factor; HAMAP: N utilization substance protein B-like protein; KEGG: sjp:SJA_C1-02780 N utilization substance protein B; PFAM: NusB/RsmB/TIM44 YP_004554552.1 TIGRFAM: Thiamine-monophosphate kinase; KEGG: sjp:SJA_C1-02770 thiamine-monophosphate kinase; PFAM: AIR synthase related protein; AIR synthase related protein, C-terminal YP_004554553.1 PFAM: Inorganic H+ pyrophosphatase; TIGRFAM: Inorganic H+ pyrophosphatase; HAMAP: Pyrophosphate-energized proton pump; KEGG: sjp:SJA_C1-02760 inorganic pyrophosphatase YP_004554554.1 PFAM: Protein of unknown function DUF2490; KEGG: sjp:SJA_C1-02740 hypothetical protein YP_004554555.1 KEGG: sjp:SJA_C1-02730 8-amino-7-oxononanoate synthase; PFAM: Aminotransferase, class I/II YP_004554556.1 TIGRFAM: Dethiobiotin synthase; HAMAP: Dethiobiotin synthase; KEGG: sjp:SJA_C1-02720 dethiobiotin synthase YP_004554557.1 KEGG: sjp:SJA_C1-02700 putative endopeptidase/metallopeptidase; PFAM: Peptidase M13; Peptidase M13, neprilysin, C-terminal YP_004554558.1 KEGG: sjp:SJA_C1-02690 hypothetical protein YP_004554559.1 KEGG: sjp:SJA_C1-02680 adenosylmethionine-8-amino-7-oxononanoate aminotransferase; PFAM: Aminotransferase class-III YP_004554560.1 KEGG: swi:Swit_4110 translation initiation factor IF-1; TIGRFAM: Translation initiation factor IF-1; PFAM: S1, IF1 type YP_004554561.1 TIGRFAM: Maf-like protein; HAMAP: Maf-like protein; KEGG: sjp:SJA_C1-02660 septum formation protein; PFAM: Maf-like protein YP_004554562.1 KEGG: sjp:SJA_C1-02650 putative ribonuclease YP_004554563.1 KEGG: apt:APA01_19930 hypothetical protein; manually curated; HAMAP: Uncharacterised protein family, zinc-binding YP_004554564.1 PFAM: Integrase, catalytic core, phage; KEGG: integrase family protein YP_004554565.1 KEGG: mag:amb3643 hypothetical protein YP_004554566.1 KEGG: eli:ELI_10770 IS511, transposase OrfB; manually curated; PFAM: Integrase, catalytic core YP_004554567.1 PFAM: Transposase IS3/IS911; KEGG: rpx:Rpdx1_2459 transposase IS3/IS911 family protein YP_004554568.1 manually curated; KEGG: kpn:KPN_02071 putative enzyme YP_004554570.1 KEGG: esa:ESA_03035 hypothetical protein YP_004554572.1 KEGG: swi:Swit_3674 hypothetical protein YP_004554573.1 KEGG: mch:Mchl_5635 hypothetical protein YP_004554574.1 PFAM: Resolvase, N-terminal; KEGG: ajs:Ajs_1803 resolvase domain-containing protein YP_004554575.1 KEGG: oca:OCAR_6404 hypothetical protein YP_004554576.1 KEGG: mch:Mchl_4088 hypothetical protein YP_004554578.1 manually curated; TIGRFAM: DNA mismatch endonuclease vsr; KEGG: xoo:XOO0606 XorII very-short-patch-repair endonuclease; PFAM: DNA mismatch endonuclease vsr YP_004554579.1 PFAM: Restriction endonuclease, type II, Cfr10I/Bse634I YP_004554580.1 KEGG: DNA-cytosine methyltransferase; TIGRFAM: DNA methylase, C-5 cytosine-specific; PFAM: DNA methylase, C-5 cytosine-specific YP_004554581.1 KEGG: ses:SARI_00228 hypothetical protein; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; DNA/RNA helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal YP_004554582.1 KEGG: bcj:BCAL3078 putative lipoprotein YP_004554584.1 KEGG: rfr:Rfer_1356 hypothetical protein YP_004554586.1 KEGG: sil:SPOA0084 hypothetical protein YP_004554587.1 PFAM: DNA primase/polymerase, bifunctional, N-terminal; Primase, C-terminal 1; KEGG: sil:SPOA0086 hypothetical protein YP_004554588.1 PFAM: Prophage CP4-57 regulatory YP_004554589.1 manually curated YP_004554590.1 PFAM: Protein of unknown function DUF262; Protein of unknown function DUF1524 RloF; KEGG: bcj:BCAL1172 hypothetical protein YP_004554591.1 PFAM: Pirin, N-terminal; KEGG: sjp:SJA_C1-25380 pirin-related protein YP_004554592.1 PFAM: Protein-tyrosine phosphatase, low molecular weight; KEGG: sjp:SJA_C1-33600 protein tyrosine phosphatase; SMART: Protein-tyrosine phosphatase, low molecular weight YP_004554593.1 KEGG: sjp:SJA_C1-33590 putative ATPase YP_004554594.1 HAMAP: Phosphoenolpyruvate carboxylase; KEGG: sjp:SJA_C1-33580 phosphoenolpyruvate carboxylase; PFAM: Phosphoenolpyruvate carboxylase YP_004554595.1 KEGG: sjp:SJA_C1-06510 hypothetical protein YP_004554596.1 KEGG: sjp:SJA_C1-06520 hypothetical protein YP_004554597.1 PFAM: Peptidyl-prolyl cis-trans isomerase, cyclophilin-type; KEGG: sjp:SJA_C1-06530 peptidyl-prolyl cis-trans isomerase B YP_004554598.1 KEGG: sjp:SJA_C1-06540 magnesium transporter; TIGRFAM: Divalent cation transporter; PFAM: Magnesium transporter, MgtE intracellular region; Cystathionine beta-synthase, core; MgtE integral membrane region YP_004554599.1 PFAM: Uncharacterised conserved protein UCP032025; KEGG: sjp:SJA_C1-06550 hypothetical protein YP_004554600.1 KEGG: sjp:SJA_C1-06560 DNA polymerase bacteriophage-type; TIGRFAM: Phage SPO1 DNA polymerase-related protein; PFAM: Uracil-DNA glycosylase-like YP_004554601.1 PFAM: Haemerythrin/HHE cation-binding motif; KEGG: sjp:SJA_C1-06570 hypothetical protein YP_004554602.1 manually curated; KEGG: sjp:SJA_C1-06580 hypothetical protein YP_004554603.1 SMART: Elongator protein 3/MiaB/NifB; KEGG: sjp:SJA_C1-06590 radical SAM protein YP_004554604.1 PFAM: Ankyrin repeat; KEGG: sjp:SJA_C1-00570 ankyrin repeat protein YP_004554605.1 PFAM: Copper chaperone SCO1/SenC; KEGG: sjp:SJA_C1-00560 uncharacterized protein Sco1 YP_004554606.1 KEGG: sjp:SJA_C1-00550 hypothetical protein; HAMAP: Uncharacterised conserved protein UCP006173; PFAM: Uncharacterised protein family UPF0153 YP_004554607.1 PFAM: Protein of unknown function DUF45; KEGG: sjp:SJA_C1-00540 putative metal-dependent hydrolase YP_004554608.1 KEGG: nar:Saro_1581 hypothetical protein YP_004554609.1 PFAM: Class II aldolase/adducin, N-terminal; KEGG: sjp:SJA_C1-06610 putative aldolase YP_004554610.1 TIGRFAM: Ribosomal protein S21; HAMAP: Ribosomal protein S21; KEGG: sjp:SJA_C1-06620 ribosomal protein S21; PFAM: Ribosomal protein S21 YP_004554611.1 PFAM: Peptidyl-prolyl cis-trans isomerase, FKBP-type; Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal; KEGG: sjp:SJA_C1-06630 putative peptidyl-prolyl isomerase YP_004554612.1 PFAM: Uncharacterised protein family UPF0118; KEGG: sjp:SJA_C1-06640 putative permease YP_004554613.1 TIGRFAM: Peptidase S26A, signal peptidase I; KEGG: sjp:SJA_C1-06650 signal peptidase I; PFAM: Peptidase S24/S26A/S26B, conserved region YP_004554614.1 TIGRFAM: Holo-[acyl carrier protein] synthase; Phosphopantethiene-protein transferase; HAMAP: Holo-[acyl-carrier-protein] synthase; KEGG: sjp:SJA_C1-06660 holo-[acyl-carrier-protein] synthase; PFAM: 4'-phosphopantetheinyl transferase YP_004554615.1 PFAM: Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ; TIGRFAM: Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ; HAMAP: Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ; KEGG: sjp:SJA_C1-06670 pyridoxine 5-phosphate synthase YP_004554616.1 PFAM: Phosphoribosyltransferase; TIGRFAM: Orotate phosphoribosyltransferase, Thermus type; HAMAP: Orotate phosphoribosyltransferase; KEGG: sjp:SJA_C1-06680 orotate phosphoribosyltransferase YP_004554617.1 TIGRFAM: Cytochrome c oxidase, subunit II; KEGG: sjp:SJA_C1-06690 cytochrome c oxidase subunit II; PFAM: Cytochrome c oxidase subunit II C-terminal; Cytochrome C oxidase subunit II, transmembrane region YP_004554618.1 KEGG: sjp:SJA_C1-06700 cytochrome c oxidase subunit I; TIGRFAM: Cytochrome c oxidase, subunit I bacterial type; PFAM: Cytochrome c oxidase, subunit I YP_004554619.1 TIGRFAM: Protohaem IX farnesyltransferase; HAMAP: Protohaem IX farnesyltransferase; KEGG: sjp:SJA_C1-06710 protoheme IX farnesyltransferase; PFAM: UbiA prenyltransferase YP_004554620.1 KEGG: sjp:SJA_C1-06720 hypothetical protein YP_004554621.1 KEGG: sjp:SJA_C1-06730 cytochrome c oxidase subunit XI assembly protein; HAMAP: Cytochrome c oxidase assembly protein ctaG; PFAM: Cytochrome c oxidase assembly protein CtaG/Cox11 YP_004554622.1 PFAM: Cytochrome c oxidase, subunit III; KEGG: sjp:SJA_C1-06740 cytochrome c oxidase subunit III YP_004554623.1 PFAM: Protein of unknown function DUF983; KEGG: sjp:SJA_C1-06750 hypothetical protein YP_004554624.1 KEGG: sjp:SJA_C1-06760 hypothetical protein YP_004554625.1 TIGRFAM: Threonine synthase; KEGG: sjp:SJA_C1-06770 threonine synthase; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit YP_004554626.1 PFAM: Protein of unknown function methylase putative; KEGG: sjp:SJA_C1-06780 putative SAM-dependent methyltransferase YP_004554627.1 PFAM: Fatty acid hydroxylase; KEGG: sjp:SJA_C1-06860 beta-carotene hydroxylase YP_004554628.1 KEGG: sjp:SJA_C1-06870 hypothetical protein; TIGRFAM: Conserved hypothetical protein CHP02001; PFAM: Conserved hypothetical protein CHP02001 YP_004554629.1 PFAM: Mechanosensitive ion channel MscS; KEGG: sjp:SJA_C1-06880 small-conductance mechanosensitive channel YP_004554630.1 TIGRFAM: Cystathionine beta-lyase, bacterial; KEGG: sjp:SJA_C1-06890 cystathionine beta-lyase; PFAM: Cys/Met metabolism, pyridoxal phosphate-dependent enzyme YP_004554631.1 PFAM: Rhodanese-like; KEGG: sjp:SJA_C1-06900 thiosulfate sulfurtransferase; SMART: Rhodanese-like YP_004554632.1 KEGG: sjp:SJA_C1-06910 hypothetical protein YP_004554633.1 PFAM: GTP cyclohydrolase I/Nitrile oxidoreductase; TIGRFAM: Nitrile oxidoreductase, NADPH-dependent, QueF; HAMAP: Nitrile oxidoreductase, NADPH-dependent, QueF; KEGG: sjp:SJA_C1-06920 7-cyano-7-deazaguanine reductase YP_004554634.1 KEGG: sjp:SJA_C1-06930 puromycin-sensitive aminopeptidase; PFAM: Peptidase M1, membrane alanine aminopeptidase, N-terminal YP_004554635.1 manually curated; TIGRFAM: Oligopeptide transporter OPT; Oligopeptide transporter OPT superfamily; KEGG: sjp:SJA_C1-06940 oligopeptide transporter OPT; PFAM: Oligopeptide transporter OPT superfamily YP_004554636.1 KEGG: sjp:SJA_C1-06950 putative lipolytic enzyme YP_004554637.1 KEGG: sjp:SJA_C1-06960 hypothetical protein; TIGRFAM: Hemimethylated DNA-binding region; PFAM: Hemimethylated DNA-binding region YP_004554638.1 PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: sjp:SJA_C2-03950 TetR-family transcriptional regulator YP_004554639.1 KEGG: sjp:SJA_C1-07220 cardiolipin synthase; PFAM: Phospholipase D/Transphosphatidylase; SMART: Phospholipase D/Transphosphatidylase YP_004554640.1 TIGRFAM: DNA-directed RNA polymerase, omega subunit; HAMAP: DNA-directed RNA polymerase, omega subunit; KEGG: sjp:SJA_C1-07210 DNA-directed RNA polymerase subunit K/omega; PFAM: RNA polymerase Rpb6 YP_004554641.1 PFAM: Protein of unknown function DUF1275; KEGG: swi:Swit_5273 hypothetical protein YP_004554642.1 KEGG: swi:Swit_4793 hypothetical protein YP_004554643.1 PFAM: Bacterial virulence; KEGG: swi:Swit_4800 virulence factor family protein YP_004554644.1 PFAM: Protein of unknown function DUF2147; KEGG: swi:Swit_4794 hypothetical protein YP_004554645.1 PFAM: Bacterial virulence; KEGG: swi:Swit_5268 type IV secretory pathway VirJ component-like protein YP_004554646.1 PFAM: Nitroreductase-like; KEGG: sjp:SJA_C1-07200 putative nitroreductase YP_004554647.1 TIGRFAM: Chaperonin Cpn60; HAMAP: 60 kDa chaperonin; KEGG: sjp:SJA_C1-21250 chaperonin GroEL; PFAM: Chaperonin Cpn60/TCP-1 YP_004554648.1 KEGG: sjp:SJA_C1-21260 chaperonin GroES; HAMAP: Chaperonin Cpn10, subgroup; PFAM: Chaperonin Cpn10 YP_004554649.1 PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: cak:Caul_2548 TonB-dependent receptor YP_004554650.1 PFAM: Glutathione S-transferase, C-terminal; KEGG: sjp:SJA_C1-21280 glutathione S-transferase YP_004554651.1 PFAM: Polysaccharide deacetylase; Glycosyl transferase, family 2; KEGG: sjp:SJA_C1-07190 putative bi-functional transferase/deacetylase YP_004554652.1 SMART: PDZ/DHR/GLGF; KEGG: sjp:SJA_C1-07180 putative protease YP_004554653.1 KEGG: sjp:SJA_C1-07170 two-component system response regulator CusR; PFAM: Signal transduction response regulator, receiver region; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver region YP_004554654.1 KEGG: sjp:SJA_C1-07160 signal transduction histidine kinase; PFAM: ATP-binding region, ATPase-like; HAMP linker domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SMART: ATP-binding region, ATPase-like; HAMP linker domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region YP_004554655.1 KEGG: sjp:SJA_C1-07150 LacI-family transcriptional regulator; PFAM: HTH transcriptional regulator, LacI; Periplasmic binding protein/LacI transcriptional regulator; SMART: HTH transcriptional regulator, LacI YP_004554656.1 KEGG: sjp:SJA_C1-09620 L-fucose permease; TIGRFAM: Bacterial glucose/galactose transporter; PFAM: Major facilitator superfamily MFS-1 YP_004554658.1 KEGG: gdi:GDI_3718 putative TonB-dependent receptor protein; TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug YP_004554659.1 KEGG: pla:Plav_2066 hypothetical protein YP_004554660.1 PFAM: PepSY-associated TM helix; KEGG: pla:Plav_2065 PepSY-associated TM helix domain-containing protein YP_004554661.1 PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: sjp:SJA_C1-25390 TonB-dependent receptor-like protein YP_004554662.1 KEGG: cse:Cseg_2391 hypothetical protein YP_004554663.1 KEGG: sjp:SJA_C1-25410 hypothetical protein YP_004554664.1 KEGG: rhi:NGR_b18130 RNA polymerase sigma factor SigJ; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2 YP_004554665.1 KEGG: sme:SM_b20029 hypothetical protein; TIGRFAM: Alkylhydroperoxidase AhpD core; PFAM: Carboxymuconolactone decarboxylase YP_004554666.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: mlo:mlr1992 transcriptional regulator YP_004554667.1 PFAM: Flavodoxin/nitric oxide synthase; KEGG: cak:Caul_0456 flavodoxin/nitric oxide synthase YP_004554668.1 PFAM: Isoprenylcysteine carboxyl methyltransferase; KEGG: ara:Arad_0504 hypothetical protein YP_004554669.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: rlt:Rleg2_6531 FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_004554670.1 PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: rec:RHECIAT_PA0000349 probable transcriptional regulator protein, TetR family YP_004554671.1 PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: sno:Snov_2036 short-chain dehydrogenase/reductase SDR YP_004554672.1 manually curated; PFAM: AraC-type transcriptional regulator, N-terminal; Helix-turn-helix, AraC type; KEGG: pla:Plav_3015 AraC-like transcriptional regulator; SMART: Helix-turn-helix, AraC domain YP_004554673.1 PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: vap:Vapar_3938 transcriptional regulator, TetR family YP_004554674.1 KEGG: sml:Smlt2081 putative ThiJ/PfpI family protein YP_004554675.1 KEGG: mpo:Mpop_3087 conjugal transfer protein TrbC YP_004554676.1 PFAM: Isoprenylcysteine carboxyl methyltransferase; KEGG: ara:Arad_0504 hypothetical protein YP_004554677.1 PFAM: Antibiotic biosynthesis monooxygenase; KEGG: sno:Snov_1222 antibiotic biosynthesis monooxygenase YP_004554678.1 KEGG: cak:Caul_5103 RND efflux system outer membrane lipoprotein; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT; PFAM: Outer membrane efflux protein YP_004554679.1 PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: bac:BamMC406_6291 TetR family transcriptional regulator YP_004554680.1 KEGG: ccs:CCNA_01865 periplasmic multidrug efflux lipoprotein precursor; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD YP_004554681.1 PFAM: Acriflavin resistance protein; KEGG: spe:Spro_3139 acriflavin resistance protein YP_004554682.1 KEGG: ara:Arad_7159 dioxygenase; PFAM: Intradiol ring-cleavage dioxygenase, C-terminal; Catechol dioxygenase, N-terminal YP_004554683.1 KEGG: azl:AZL_a08920 maleylacetate reductase; PFAM: Alcohol dehydrogenase, iron-type YP_004554684.1 PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: prw:PsycPRwf_0894 TetR family transcriptional regulator YP_004554685.1 KEGG: sjp:SJA_C2-03770 putative FAD-monooxygenase; PFAM: Monooxygenase, FAD-binding YP_004554686.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: bac:BamMC406_5282 glyoxalase/bleomycin resistance protein/dioxygenase YP_004554687.1 PFAM: Fumarylacetoacetase, C-terminal-like; KEGG: srt:Srot_2420 fumarylacetoacetate (FAA) hydrolase YP_004554688.1 KEGG: dsh:Dshi_2983 hypothetical protein; PFAM: Alcohol dehydrogenase, zinc-binding YP_004554689.1 PFAM: Protein of unknown function DUF849, prokaryotic; KEGG: mlo:mll0106 hypothetical protein YP_004554690.1 KEGG: sme:SMa0339 short chain alcohol dehydrogenase-related dehydrogenase; PFAM: Short-chain dehydrogenase/reductase SDR YP_004554691.1 KEGG: swi:Swit_1447 alpha/beta hydrolase domain-containing protein YP_004554692.1 KEGG: azo:azo3066 AMP-binding domain protein; PFAM: AMP-dependent synthetase/ligase YP_004554693.1 PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: prw:PsycPRwf_0894 TetR family transcriptional regulator YP_004554694.1 PFAM: Luciferase-like, subgroup; KEGG: mlo:mlr5787 hypothetical protein YP_004554696.1 KEGG: acyl-CoA dehydrogenase type 2 domain; manually curated; PFAM: Acyl-CoA dehydrogenase, type 2, C-terminal YP_004554697.1 KEGG: rmr:Rmar_2389 2-deoxy-D-gluconate 3-dehydrogenase; PFAM: Short-chain dehydrogenase/reductase SDR YP_004554698.1 PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: swi:Swit_3048 TonB-dependent receptor YP_004554699.1 KEGG: swi:Swit_3025 cytochrome P450; PFAM: Cytochrome P450 YP_004554701.1 KEGG: lch:Lcho_0853 flavin reductase domain-containing protein; manually curated; PFAM: Flavin reductase-like, FMN-binding YP_004554704.1 manually curated; KEGG: pzu:PHZ_c3399 hypothetical protein YP_004554705.1 PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; KEGG: azl:AZL_028160 TonB-dependent receptor YP_004554706.1 KEGG: bph:Bphy_4529 multi-sensor hybrid histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; HAMP linker domain; Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region; ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region YP_004554707.1 TIGRFAM: Diguanylate cyclase, predicted; PAS; PFAM: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; Signal transduction response regulator, receiver region; PAS fold; KEGG: hch:HCH_03647 signal transduction protein; SMART: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; Signal transduction response regulator, receiver region; PAS YP_004554708.1 KEGG: integrase family protein YP_004554709.1 TIGRFAM: Alanine dehydrogenase/pyridine nucleotide transhydrogenase; KEGG: sjp:SJA_C1-31490 alanine dehydrogenase; PFAM: Alanine dehydrogenase/PNT, C-terminal; Alanine dehydrogenase/PNT, N-terminal YP_004554710.1 KEGG: sjp:SJA_C1-31330 putative NAD-dependent epimerase/dehydratase; PFAM: NAD-dependent epimerase/dehydratase YP_004554711.1 TIGRFAM: KpsF/GutQ; KEGG: sjp:SJA_C1-31310 arabinose-5-phosphate isomerase; PFAM: Sugar isomerase (SIS); Cystathionine beta-synthase, core YP_004554712.1 KEGG: sjp:SJA_C1-31300 3-deoxy-manno-octulosonate cytidylyltransferase; PFAM: Acylneuraminate cytidylyltransferase YP_004554713.1 PFAM: Phosphoglycerate mutase; KEGG: sjp:SJA_C1-31290 putative phosphoglycerate mutase YP_004554714.1 PFAM: OstA-like protein; KEGG: sjp:SJA_C1-31280 OstA-like protein YP_004554715.1 PFAM: Protein of unknown function DUF1239; KEGG: sjp:SJA_C1-31270 hypothetical protein YP_004554716.1 KEGG: sjp:SJA_C1-31260 ribonuclease D; PFAM: 3'-5' exonuclease; SMART: 3'-5' exonuclease YP_004554717.1 KEGG: sjp:SJA_C1-31240 cold shock protein CspA; PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein YP_004554718.1 PFAM: MT-A70; KEGG: ace:Acel_2063 MT-A70 family protein YP_004554719.1 PFAM: Restriction endonuclease, type II, BglII; KEGG: nmu:Nmul_A2609 hypothetical protein YP_004554720.1 KEGG: sjp:SJA_C1-31210 Xre-family transcriptional regulator; PFAM: Protein of unknown function DUF2083,transcriptional regulator; Protein of unknown function DUF955; Helix-turn-helix type 3; SMART: Helix-turn-helix type 3 YP_004554721.1 KEGG: sjp:SJA_C1-31200 hypothetical protein YP_004554722.1 PFAM: Phosphate transporter; KEGG: sjp:SJA_C1-31190 PiT-family inorganic phosphate transporter YP_004554723.1 PFAM: Putitive phosphate transport regulator; NUDIX hydrolase domain; KEGG: sjp:SJA_C1-31180 hypothetical protein YP_004554724.1 PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: sjp:SJA_C1-31170 TonB-dependent receptor-like protein YP_004554725.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: sjp:SJA_C1-31160 LysR-family transcriptional regulator YP_004554726.1 manually curated; KEGG: dol:Dole_2706 hypothetical protein YP_004554727.1 KEGG: pla:Plav_0324 hypothetical protein YP_004554728.1 PFAM: Integrase, catalytic core, phage; KEGG: oan:Oant_4322 phage integrase family protein YP_004554733.1 PFAM: Peptidase C14, caspase catalytic; KEGG: caa:Caka_0985 peptidase C14 caspase catalytic subunit P20 YP_004554734.1 KEGG: caa:Caka_0984 hypothetical protein YP_004554735.1 PFAM: Major facilitator superfamily MFS-1; KEGG: cak:Caul_5276 major facilitator transporter YP_004554736.1 PFAM: Beta-lactamase-related; KEGG: sro:Sros_4403 carboxylesterase YP_004554737.1 KEGG: mva:Mvan_2672 alpha/beta hydrolase domain-containing protein YP_004554738.1 manually curated; PFAM: HTH transcriptional regulator, LacI; Periplasmic binding protein/LacI transcriptional regulator; KEGG: bsb:Bresu_1681 transcriptional regulator, LacI family; SMART: HTH transcriptional regulator, LacI YP_004554739.1 KEGG: eli:ELI_04230 fructokinase; PFAM: ROK YP_004554740.1 KEGG: nar:Saro_1879 levansucrase; PFAM: Glycoside hydrolase, family 68 YP_004554741.1 PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: cse:Cseg_0475 TonB-dependent receptor YP_004554743.1 KEGG: nar:Saro_1693 AMP-binding domain protein; PFAM: AMP-dependent synthetase/ligase YP_004554744.1 PFAM: Putative thiol-disulphide oxidoreductase DCC; KEGG: xcv:XCV3339 hypothetical protein YP_004554745.1 PFAM: Amine oxidase; KEGG: azc:AZC_3559 putative FAD-dependent monooxygenase YP_004554747.1 KEGG: nml:Namu_1943 hypothetical protein YP_004554749.1 PFAM: Integrase, catalytic core, phage; KEGG: nar:Saro_0306 phage integrase YP_004554750.1 KEGG: sjp:SJA_C1-31150 hypothetical protein YP_004554751.1 KEGG: sjp:SJA_C1-31140 hypothetical protein YP_004554752.1 PFAM: Argininosuccinate synthase; TIGRFAM: Argininosuccinate synthase; HAMAP: Argininosuccinate synthase; KEGG: sjp:SJA_C1-31130 argininosuccinate synthase YP_004554753.1 PFAM: EF-Hand domain; KEGG: sjp:SJA_C1-31120 calcium-binding EF-hand protein YP_004554754.1 KEGG: sjp:SJA_C1-31110 CheY-like response regulator; PFAM: Signal transduction response regulator, receiver region; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver region YP_004554755.1 KEGG: sjp:SJA_C1-31100 signal transduction histidine kinase; PFAM: ATP-binding region, ATPase-like; HAMP linker domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; HAMP linker domain YP_004554756.1 PFAM: Protein of unknown function DUF81; KEGG: sjp:SJA_C1-31470 putative permease YP_004554757.1 PFAM: Sulfotransferase; Tetratricopeptide TPR-4; Tetratricopeptide TPR-1; KEGG: sal:Sala_3169 tetratricopeptide TPR_2 YP_004554758.1 PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: ccs:CCNA_03227 TonB-dependent receptor YP_004554759.1 KEGG: sjp:SJA_C1-31450 transglutaminase-like enzyme; PFAM: Transglutaminase-like; Bacterial transglutaminase-like, N-terminal; SMART: Transglutaminase-like YP_004554760.1 PFAM: Protein of unknown function DUF404, bacteria N-terminal; Protein of unknown function DUF407; Protein of unknown function DUF403, bacteria; KEGG: sjp:SJA_C1-31440 hypothetical protein YP_004554761.1 KEGG: sjp:SJA_C1-31430 hypothetical protein; PFAM: Protein of unknown function DUF2126; Bacterial transglutaminase-like, N-terminal; Transglutaminase-like; SMART: Transglutaminase-like YP_004554762.1 KEGG: sjp:SJA_C1-31410 hypothetical protein YP_004554763.1 KEGG: sjp:SJA_C1-31400 hypothetical protein YP_004554764.1 TIGRFAM: Uracil-DNA glycosylase; HAMAP: Uracil-DNA glycosylase; KEGG: sjp:SJA_C1-31390 uracil-DNA glycosylase; PFAM: Uracil-DNA glycosylase-like YP_004554765.1 KEGG: sjp:SJA_C1-31380 beta-lactamase class A; PFAM: Beta-lactamase-related YP_004554766.1 PFAM: Protein of unknown function DUF2253, membrane; KEGG: sjp:SJA_C1-31370 hypothetical protein YP_004554767.1 KEGG: sjp:SJA_C1-31360 CelD-like protein YP_004554768.1 SMART: Transcription factor jumonji/aspartyl beta-hydroxylase; KEGG: sjp:SJA_C1-31350 transcription factor JmjC YP_004554769.1 KEGG: sjp:SJA_C1-31340 CelD-like protein YP_004554770.1 PFAM: Outer membrane protein, OmpA/MotB, C-terminal; KEGG: sjp:SJA_C1-31090 chemotaxis MotB protein YP_004554771.1 TIGRFAM: flagellar motor stator protein MotA; KEGG: sjp:SJA_C1-31080 chemotaxis MotA protein YP_004554772.1 PFAM: Flagellin, N-terminal; KEGG: sjp:SJA_C1-31070 flagellar hook-associated protein 3 FlgL YP_004554773.1 KEGG: sjp:SJA_C1-31060 flagellar hook-associated protein 1 FlgK; TIGRFAM: Flagellar hook-associated protein, FlgK; PFAM: Protein of unknown function DUF1078, C-terminal; Flagellar basal body rod protein, N-terminal YP_004554774.1 PFAM: Flagellar protein FlgJ, N-terminal; KEGG: sjp:SJA_C1-31050 flagellar protein FlgJ YP_004554775.1 KEGG: sjp:SJA_C1-31040 flagellar P-ring protein precursor FlgI; HAMAP: Flagellar P-ring protein; PFAM: Flagellar P-ring protein YP_004554776.1 KEGG: sjp:SJA_C1-31030 flagellar L-ring protein precursor FlgH; HAMAP: Flagellar L-ring protein; PFAM: Flagellar L-ring protein YP_004554777.1 KEGG: sjp:SJA_C1-31020 flagellar basal-body rod protein FlgG; TIGRFAM: Flagellar basal-body rod FlgG; Fagellar hook-basal body protein, FlgE/F/G; PFAM: Protein of unknown function DUF1078, C-terminal; Flagellar basal body rod protein, N-terminal YP_004554778.1 KEGG: sjp:SJA_C1-31010 flagellar basal-body rod protein FlgF; TIGRFAM: Flagellar basal-body rod FlgF; Fagellar hook-basal body protein, FlgE/F/G; PFAM: Flagellar basal body rod protein, N-terminal; Protein of unknown function DUF1078, C-terminal YP_004554779.1 KEGG: sjp:SJA_C1-31000 flagellar hook protein FlgE; TIGRFAM: Fagellar hook-basal body protein, FlgE/F/G; PFAM: Protein of unknown function DUF1078, C-terminal; Flagellar basal body rod protein, N-terminal YP_004554780.1 PFAM: Flagellar hook capping protein; KEGG: sjp:SJA_C1-30990 flagellar basal-body rod modification protein FlgD YP_004554781.1 KEGG: sjp:SJA_C1-30980 flagellar basal-body rod protein FlgC; TIGRFAM: Flagellar basal-body rod protein FlgC; PFAM: Protein of unknown function DUF1078, C-terminal YP_004554782.1 KEGG: sjp:SJA_C1-30970 flagellar basal-body rod protein FlgB; TIGRFAM: Flagellar basal-body rod protein FlgB; PFAM: Flagellar basal body rod protein, N-terminal YP_004554783.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: sjp:SJA_C1-30960 chemotaxis MotA protein YP_004554784.1 KEGG: sjp:SJA_C1-30950 flagellar motor protein YP_004554785.1 KEGG: sjp:SJA_C1-30940 flagellar protein YP_004554786.1 KEGG: sjp:SJA_C1-30930 negative regulator of flagellin synthesis FlgM; TIGRFAM: flagellar biosynthesis anti-sigma factor protein FlgM; PFAM: Anti-sigma-28 factor, FlgM YP_004554787.1 KEGG: sjp:SJA_C1-30920 hypothetical protein YP_004554788.1 manually curated; KEGG: sjp:SJA_C1-30910 hypothetical protein YP_004554789.1 KEGG: sjp:SJA_C1-30900 flagellar biosynthesis protein FlhA; TIGRFAM: Flagellar biosynthesis protein FlhA; PFAM: Type III secretion system FHIPEP YP_004554790.1 KEGG: sjp:SJA_C1-30890 RNA polymerase sigma factor for flagellar operon FliA; TIGRFAM: RNA polymerase sigma factor, FliA/WhiG; RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 4; RNA polymerase sigma-70 region 2 YP_004554791.1 PFAM: Glycosyl transferase, family 2; KEGG: sjp:SJA_C1-30880 membrane glycosyltransferase YP_004554792.1 PFAM: Glucan biosynthesis, periplasmic, MdoG C-terminal; KEGG: sjp:SJA_C1-30870 putative periplasmic glucans biosynthesis protein YP_004554793.1 PFAM: Flagellin, N-terminal; Flagellin, C-terminal; KEGG: sjp:SJA_C1-30860 flagellin YP_004554794.1 KEGG: sjp:SJA_C1-30850 CheY-like response regulator; PFAM: RNA polymerase sigma factor 54, interaction; Helix-turn-helix, Fis-type; SMART: ATPase, AAA+ type, core YP_004554795.1 TIGRFAM: Flagellar hook-basal body complex protein FliE; HAMAP: Flagellar hook-basal body complex protein FliE; KEGG: sjp:SJA_C1-30840 flagellar hook-basal body protein FliE; PFAM: Flagellar hook-basal body complex protein FliE YP_004554796.1 KEGG: sjp:SJA_C1-30830 flagellar M-ring protein FliF; TIGRFAM: Flagellar FliF M-ring protein; PFAM: Secretory protein YscJ/FliF; Flagellar M-ring C-terminal YP_004554797.1 KEGG: sjp:SJA_C1-30820 flagellar motor switch protein FliG; TIGRFAM: Flagellar motor switch protein FliG; PFAM: Flagellar motor switch protein FliG; Magnesium transporter, MgtE intracellular region YP_004554798.1 KEGG: sjp:SJA_C1-30810 flagellar biosynthetic protein FliH YP_004554799.1 TIGRFAM: ATPase, type III secretion system, FliI/YscN; PFAM: ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain; KEGG: sjp:SJA_C1-30800 flagellum-specific ATP synthase FliI; SMART: ATPase, AAA+ type, core YP_004554800.1 KEGG: sjp:SJA_C1-30790 hypothetical protein YP_004554801.1 KEGG: sjp:SJA_C1-30780 hypothetical protein YP_004554802.1 PFAM: Flagellar basal body-associated protein FliL; KEGG: sjp:SJA_C1-30770 flagellar basal body-associated protein FliL YP_004554803.1 PFAM: Surface presentation of antigen (SpoA); Flagellar motor switch protein FliM; KEGG: sjp:SJA_C1-30760 flagellar motor switch protein FliM YP_004554804.1 KEGG: sjp:SJA_C1-30750 flagellar motor switch protein FliN/FliY; TIGRFAM: Flagellar motor switch FliN; PFAM: Surface presentation of antigen (SpoA) YP_004554805.1 KEGG: sjp:SJA_C1-30740 flagellar biogenesis protein FliO YP_004554806.1 KEGG: sjp:SJA_C1-30730 flagellar biosynthetic protein FliP; TIGRFAM: Flagellar transport protein FliP; PFAM: Type III secretion system inner membrane P protein YP_004554807.1 KEGG: sjp:SJA_C1-30720 flagellar biosynthesis pathway component FliQ; TIGRFAM: Flagellar biosynthesis protein FliQ; PFAM: Bacterial export protein FliQ, family 3 YP_004554808.1 KEGG: sjp:SJA_C1-30710 flagellar biosynthetic protein FliR; TIGRFAM: Flagellar biosynthesis protein FliR; PFAM: Type III secretion system inner membrane R protein YP_004554809.1 PFAM: Type III secretion exporter; KEGG: sjp:SJA_C1-30700 flagellar biosynthetic protein FlhB YP_004554810.1 KEGG: sjp:SJA_C1-30690 hypothetical protein YP_004554811.1 PFAM: Flagellar hook-associated 2, C-terminal; Flagellar hook-associated protein 2, N-terminal; Flagellin hook, IN motif; KEGG: sjp:SJA_C1-30680 flagellar hook-associated protein 2 YP_004554812.1 PFAM: Flagellar protein FliS; KEGG: sjp:SJA_C1-30670 flagellin-specific chaperone FliS YP_004554813.1 PFAM: Aminotransferase class-III; TIGRFAM: Acetylornithine/succinylornithine aminotransferase; HAMAP: Acetylornithine/succinyldiaminopimelate aminotransferase; KEGG: sjp:SJA_C1-30660 acetylornithine aminotransferase YP_004554814.1 PFAM: Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding region; Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding; TIGRFAM: Ornithine carbamoyltransferase; HAMAP: Ornithine carbamoyltransferase; KEGG: sjp:SJA_C1-30650 ornithine carbamoyltransferase YP_004554815.1 PFAM: Heat shock protein Hsp33 protein; KEGG: sjp:SJA_C1-30640 molecular chaperone HSP33 YP_004554816.1 KEGG: sjp:SJA_C1-30630 hypothetical protein YP_004554817.1 KEGG: sjp:SJA_C1-30620 probable transcription regulator ExsB; TIGRFAM: Exoenzyme S synthesis protein B/queuosine synthesis; PFAM: Queuosine synthesis-like YP_004554818.1 PFAM: Radical SAM; KEGG: sjp:SJA_C1-30610 putative organic radical activating enzyme YP_004554819.1 KEGG: sjp:SJA_C1-30600 hypothetical protein YP_004554820.1 KEGG: sjp:SJA_C1-30590 hypothetical protein YP_004554821.1 KEGG: sjp:SJA_C1-30580 lipoyl(octanoyl) transferase; manually curated; TIGRFAM: Octanoyltransferase; PFAM: Biotin/lipoate A/B protein ligase; HAMAP: Octanoyltransferase YP_004554822.1 KEGG: sjp:SJA_C1-30570 putative conserved transmembrane protein YP_004554823.1 PFAM: GCN5-related N-acetyltransferase; KEGG: sjp:SJA_C1-30560 putative acetyltransferase YP_004554824.1 KEGG: sjp:SJA_C1-30550 coproporphyrinogen III oxidase; PFAM: Coproporphyrinogen III oxidase YP_004554825.1 PFAM: tRNA/rRNA methyltransferase, SpoU; KEGG: sjp:SJA_C1-30540 RNA methyltransferase CspR YP_004554826.1 TIGRFAM: Ubiquinol-cytochrome c reductase, iron-sulphur subunit; KEGG: sjp:SJA_C1-30530 ubiquinol-cytochrome c reductase iron-sulfur subunit; PFAM: Ubiquitinol-cytochrome C reductase, Fe-S subunit, TAT signal; Rieske [2Fe-2S] iron-sulphur domain YP_004554827.1 PFAM: Cytochrome b/b6, N-terminal; Cytochrome b/b6, C-terminal; KEGG: sjp:SJA_C1-30520 ubiquinol-cytochrome c reductase cytochrome b subunit YP_004554828.1 PFAM: Cytochrome c1; KEGG: sjp:SJA_C1-30510 ubiquinol-cytochrome c reductase cytochrome c1 subunit YP_004554829.1 TIGRFAM: Adenine phosphoribosyl transferase; HAMAP: Adenine phosphoribosyl transferase; KEGG: sjp:SJA_C1-30500 adenine phosphoribosyltransferase; PFAM: Phosphoribosyltransferase YP_004554830.1 KEGG: sjp:SJA_C1-30490 putative nucleosidase; TIGRFAM: 5-methylthioadenosine/S-adenosylhomocysteine nucleosidase, putative; PFAM: Nucleoside phosphorylase YP_004554832.1 KEGG: azc:AZC_3233 putative outer membrane autotransporter barrel; TIGRFAM: Outer membrane autotransporter barrel; PFAM: Autotransporter beta-domain YP_004554833.1 PFAM: Integrase, catalytic core, phage; KEGG: sjp:SJA_C1-29390 putative integrase YP_004554834.1 PFAM: Prophage CP4-57 regulatory; KEGG: sjp:SJA_C1-31900 phage transcriptional regulator AlpA YP_004554835.1 KEGG: swi:Swit_3491 glycosyl transferase, group 1; manually curated; PFAM: Glycosyl transferase, group 1 YP_004554836.1 PFAM: Glycosyl transferase, group 1; KEGG: swi:Swit_3492 glycosyl transferase, group 1 YP_004554837.1 PFAM: ABC transporter-like; KEGG: swi:Swit_3493 ABC transporter related; SMART: ATPase, AAA+ type, core YP_004554838.1 TIGRFAM: Glucose-1-phosphate thymidylyltransferase, long form; KEGG: nar:Saro_3238 glucose-1-phosphate thymidylyltransferase; PFAM: Nucleotidyl transferase YP_004554839.1 TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase related; KEGG: nar:Saro_3237 dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 3,5-epimerase related YP_004554840.1 TIGRFAM: dTDP-4-dehydrorhamnose reductase; KEGG: nar:Saro_3236 dTDP-4-dehydrorhamnose reductase; PFAM: dTDP-4-dehydrorhamnose reductase YP_004554841.1 TIGRFAM: dTDP-glucose 4,6-dehydratase; KEGG: nar:Saro_3235 dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase YP_004554842.1 PFAM: Glycosyl transferase, family 2; KEGG: mdi:METDI2711 putative glycosyl transferase YP_004554843.1 KEGG: mpo:Mpop_0289 hypothetical protein YP_004554845.1 PFAM: Polysaccharide export protein; KEGG: swi:Swit_3494 polysaccharide export protein YP_004554846.1 KEGG: cak:Caul_2076 FkbM family methyltransferase; manually curated; TIGRFAM: Methyltransferase FkbM YP_004554847.1 KEGG: swi:Swit_3962 hypothetical protein YP_004554848.1 KEGG: mch:Mchl_4005 glycosyl transferase family 2; PFAM: Glycosyl transferase, family 2; Tetratricopeptide TPR-1; Protein of unknown function DUF23; SMART: Tetratricopeptide repeat YP_004554849.1 PFAM: ABC-2 type transporter; KEGG: swi:Swit_4015 ABC-2 type transporter YP_004554850.1 KEGG: swi:Swit_4014 capsule polysaccharide export-like protein YP_004554851.1 PFAM: Phytanoyl-CoA dioxygenase; KEGG: cja:CJA_3546 phytanoyl-CoA dioxygenase (PhyH) family YP_004554852.1 manually curated; KEGG: met:M446_3119 hypothetical protein YP_004554853.1 PFAM: GSCFA; KEGG: swi:Swit_3997 GSCFA YP_004554854.1 KEGG: ter:Tery_1481 sulfotransferase YP_004554855.1 KEGG: aex:Astex_2290 mannose-6-phosphate isomerase; PFAM: N-acylglucosamine 2-epimerase YP_004554856.1 KEGG: mrd:Mrad2831_1224 HAD superfamily hydrolase; TIGRFAM: HAD-superfamily hydrolase, subfamily IIIA; Histidinol-phosphate phosphatase; PFAM: Nucleotidyl transferase YP_004554857.1 PFAM: GHMP kinase; GHMP kinase, C-terminal; KEGG: cse:Cseg_1877 GHMP kinase YP_004554858.1 PFAM: Methyltransferase type 11; KEGG: nde:NIDE3426 hypothetical protein YP_004554859.1 PFAM: Glycosyl transferase, group 1; KEGG: azl:AZL_f01770 hypothetical protein YP_004554860.1 KEGG: pzu:PHZ_c2394 RNA polymerase sigma-70 factor, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2 YP_004554861.1 PFAM: FecR protein; KEGG: pzu:PHZ_c2172 probable FecR, iron siderophore sensor protein YP_004554862.1 PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; Secretin/TonB, short N-terminal; KEGG: pzu:PHZ_c2173 TonB-dependent receptor YP_004554863.1 KEGG: pzu:PHZ_c2174 hypothetical protein YP_004554864.1 PFAM: Asparagine synthase; KEGG: ccs:CCNA_02794 asparagine synthetase YP_004554865.1 KEGG: cse:Cseg_2565 hypothetical protein YP_004554867.1 KEGG: pzu:PHZ_c2177 transcriptional regulator, GntR family; PFAM: HTH transcriptional regulator, GntR; SMART: HTH transcriptional regulator, GntR YP_004554868.1 KEGG: pzu:PHZ_c2346 transcriptional regulator, Cro/CI family YP_004554869.1 PFAM: Protein of unknown function DUF2285; KEGG: aex:Astex_2431 hypothetical protein YP_004554870.1 PFAM: Domain of unknown function DUF1738; KEGG: mes:Meso_0539 hypothetical protein YP_004554871.1 KEGG: mlo:mlr6157 partitioning protein; PFAM: ParB-like nuclease; SMART: ParB-like nuclease YP_004554872.1 PFAM: PilT protein, N-terminal; KEGG: cak:Caul_0838 PilT domain-containing protein YP_004554873.1 PFAM: Protein of unknown function DUF2191; KEGG: cak:Caul_0837 hypothetical protein YP_004554874.1 PFAM: Protein of unknown function DUF736; KEGG: sjp:SJA_C1-29820 hypothetical protein YP_004554875.1 KEGG: mlo:msr6186 hypothetical protein YP_004554876.1 PFAM: Peptidase S26, conserved region; KEGG: cak:Caul_2015 conjugal transfer protein TraF YP_004554877.1 PFAM: Lytic transglycosylase-like, catalytic; KEGG: cak:Caul_2016 lytic transglycosylase catalytic YP_004554879.1 KEGG: mlo:mlr6191 hypothetical protein YP_004554880.1 PFAM: TRAG protein; KEGG: cak:Caul_2025 conjugal transfer coupling protein TraG YP_004554881.1 KEGG: cak:Caul_2026 CopG/DNA-binding domain-containing protein YP_004554882.1 KEGG: pla:Plav_1835 P-type conjugative transfer ATPase TrbB; TIGRFAM: ATPase, P-type conjugative transfer, TrbB; PFAM: Type II secretion system protein E YP_004554883.1 PFAM: Conjugal transfer,TrbC; KEGG: cak:Caul_2028 conjugal transfer protein TrbC YP_004554884.1 KEGG: cak:Caul_2029 putative conjugal transfer TrbD transmembrane protein YP_004554885.1 KEGG: mlo:mlr6400 conjugal transfer ATPase TrbE; PFAM: CagE, TrbE, VirB component of type IV transporter system, conserved region; SMART: ATPase, AAA+ type, core YP_004554886.1 TIGRFAM: P-type conjugative transfer protein TrbJ; KEGG: mlo:mlr6401 conjugal transfer protein TrbJ YP_004554887.1 KEGG: cak:Caul_2032 conjugal transfer protein TrbL; TIGRFAM: Conjugal transfer, TrbL; PFAM: Conjugal transfer, TrbL/VirB6 YP_004554888.1 KEGG: conjugal transfer protein TrbF YP_004554889.1 KEGG: ccs:CCNA_02768 conjugal transfer protein TrbG; TIGRFAM: P-type conjugative transfer protein TrbG; PFAM: Conjugal transfer, TrbG/VirB9/CagX YP_004554890.1 PFAM: Bacterial conjugation TrbI-like protein; KEGG: cak:Caul_2035 conjugation TrbI family protein YP_004554891.1 PFAM: Protein of unknown function DUF2274; KEGG: mlo:msr6406 hypothetical protein YP_004554892.1 PFAM: Protein of unknown function DUF736; KEGG: ccs:CCNA_02765 hypothetical protein YP_004554893.1 TIGRFAM: Excisionase/Xis, DNA-binding; KEGG: sjp:SJA_C1-03480 hypothetical protein YP_004554896.1 KEGG: sjp:SJA_C1-03520 putative nucleotidyltransferase; PFAM: Plasmid stabilisation system; SMART: HEPN YP_004554897.1 PFAM: CopG-like DNA-binding; KEGG: pmy:Pmen_3761 hypothetical protein YP_004554898.1 KEGG: mgm:Mmc1_2865 glycosyl transferase family protein YP_004554900.1 PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: rsq:Rsph17025_3976 short chain dehydrogenase YP_004554901.1 PFAM: FAD linked oxidase, N-terminal; KEGG: sfu:Sfum_0142 FAD linked oxidase domain-containing protein YP_004554902.1 PFAM: UbiA prenyltransferase; KEGG: tra:Trad_2705 UbiA prenyltransferase YP_004554903.1 PFAM: GtrA-like protein; KEGG: gbe:GbCGDNIH1_2276 hypothetical protein YP_004554904.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: gbe:GbCGDNIH1_2278 NADH-ubiquinone oxidoreductase 39-40 kDa subunit-like protein YP_004554905.1 PFAM: Amine oxidase; KEGG: gbe:GbCGDNIH1_2277 hypothetical protein YP_004554906.1 PFAM: Glycosyl transferase, family 2; KEGG: aca:ACP_0693 glycosyl transferase, group 2 family YP_004554907.1 PFAM: Glycosyl transferase, family 2; KEGG: mar:MAE_59510 glycosyl transferase YP_004554908.1 PFAM: Methyltransferase type 11; KEGG: srm:SRM_01193 3-demethylubiquinone-9 3-methyltransferase YP_004554909.1 KEGG: met:M446_2760 hypothetical protein YP_004554910.1 PFAM: Filamentation induced by cAMP/death on curing, related; KEGG: gox:GOX1386 hypothetical protein YP_004554911.1 KEGG: xau:Xaut_0218 putative addiction module antidote; manually curated; TIGRFAM: Putative addiction module antidote YP_004554912.1 KEGG: lch:Lcho_1579 death-on-curing family protein; TIGRFAM: Death-on-curing protein; PFAM: Filamentation induced by cAMP/death on curing, related YP_004554913.1 PFAM: HipA-like, C-terminal; HipA-like, N-terminal; KEGG: sjp:SJA_C1-29420 hypothetical protein YP_004554914.1 PFAM: Plasmid stabilisation system; KEGG: sal:Sala_2662 plasmid stabilization system protein YP_004554915.1 KEGG: sal:Sala_2661 hypothetical protein YP_004554916.1 KEGG: sal:Sala_2093 CopG/Arc/MetJ family transcriptional regulator; TIGRFAM: Putative addiction module antidote protein, CC2985; PFAM: Putative addiction module antidote protein, CC2985 YP_004554917.1 PFAM: Plasmid stabilisation system; KEGG: sno:Snov_0768 plasmid stabilization system YP_004554918.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: cps:CPS_2548 hypothetical protein YP_004554919.1 KEGG: sal:Sala_1395 glucose/galactose transporter; TIGRFAM: Bacterial glucose/galactose transporter; PFAM: Major facilitator superfamily MFS-1 YP_004554920.1 KEGG: nar:Saro_1729 beta-glucosidase; PFAM: Glycoside hydrolase, family 3, N-terminal; Glycoside hydrolase, family 3, C-terminal YP_004554921.1 PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; KEGG: hne:HNE_2180 outer membrane receptor (OMR) family protein YP_004554922.1 PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: hne:HNE_2447 TetR family transcriptional regulator YP_004554923.1 PFAM: Sulfatase; KEGG: cps:CPS_2368 putative N-acetylglucosamine-6-sulfatase YP_004554924.1 KEGG: axy:AXYL_03924 TonB-dependent siderophore receptor family protein 13; TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel YP_004554925.1 PFAM: Integrase, catalytic core, phage; KEGG: sjp:SJA_C1-29390 putative integrase YP_004554926.1 KEGG: sjp:SJA_C1-29370 dicarboxylate/amino acid:cation (Na+ or H+) symporter; HAMAP: C4-dicarboxylate transport protein; PFAM: Sodium:dicarboxylate symporter YP_004554927.1 manually curated; PFAM: Signal transduction response regulator, receiver region; KEGG: sjp:SJA_C1-29360 CheY-like response regulator; SMART: Signal transduction response regulator, receiver region YP_004554928.1 PFAM: N-formylglutamate amidohydrolase; KEGG: sjp:SJA_C1-29350 N-formylglutamate amidohydrolase YP_004554929.1 PFAM: Phosphate-selective porin O/P; KEGG: swi:Swit_2230 phosphate-selective porin O and P YP_004554930.1 KEGG: sjp:SJA_C1-25660 hypothetical protein YP_004554931.1 KEGG: sjp:SJA_C1-25650 two-component system response regulator HydG; PFAM: RNA polymerase sigma factor 54, interaction; Signal transduction response regulator, receiver region; Helix-turn-helix, Fis-type; SMART: Signal transduction response regulator, receiver region; ATPase, AAA+ type, core YP_004554932.1 KEGG: sjp:SJA_C1-25640 hypothetical protein YP_004554933.1 KEGG: sjp:SJA_C1-25630 NAD(P) transhydrogenase alpha subunit YP_004554934.1 PFAM: NAD(P) transhydrogenase, beta subunit; KEGG: sjp:SJA_C1-25620 NAD(P) transhydrogenase beta subunit YP_004554935.1 KEGG: sjp:SJA_C1-25610 aspartate racemase; TIGRFAM: Aspartate racemase; PFAM: Asp/Glu/hydantoin racemase YP_004554936.1 TIGRFAM: Ribosomal protein L7/L12; HAMAP: Ribosomal protein L7/L12; KEGG: sjp:SJA_C1-29340 ribosomal protein L7/L12; PFAM: Ribosomal protein L7/L12, C-terminal YP_004554937.1 KEGG: sjp:SJA_C1-29330 ribosomal protein L10; HAMAP: 50S ribosomal protein L10; PFAM: Ribosomal protein L10 YP_004554938.1 SMART: Metal-dependent phosphohydrolase, HD region; TIGRFAM: RelA/SpoT protein; KEGG: sjp:SJA_C1-29300 guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase; PFAM: RelA/SpoT; Metal-dependent phosphohydrolase, HD region, subdomain; TGS; Amino acid-binding ACT YP_004554939.1 PFAM: Helix-turn-helix, HxlR type; KEGG: sjp:SJA_C1-29290 HxlR-family transcriptional regulator YP_004554940.1 KEGG: sjp:SJA_C1-29280 two-component system sensor histidine kinase YesM; PFAM: Signal transduction histidine kinase, internal region; ATP-binding region, ATPase-like; SMART: ATP-binding region, ATPase-like YP_004554941.1 KEGG: sjp:SJA_C1-29270 two-component system response regulator LytT; PFAM: LytTr DNA-binding region; Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region YP_004554942.1 PFAM: GtrA-like protein; KEGG: sjp:SJA_C1-29250 GtrA-family membrane protein YP_004554943.1 KEGG: sjp:SJA_C1-29240 hypothetical protein YP_004554944.1 PFAM: CMP/dCMP deaminase, zinc-binding; KEGG: sjp:SJA_C1-29230 putative deaminase YP_004554945.1 KEGG: sjp:SJA_C1-29220 hypothetical protein YP_004554946.1 TIGRFAM: Ribosomal protein L28; HAMAP: Ribosomal protein L28; KEGG: sjp:SJA_C1-29210 ribosomal protein L28; PFAM: Ribosomal protein L28 YP_004554947.1 KEGG: sjp:SJA_C1-29200 hypothetical protein YP_004554948.1 PFAM: Rickettsia 17kDa surface antigen; KEGG: sjp:SJA_C1-29190 hypothetical protein YP_004554949.1 KEGG: sjp:SJA_C1-29180 circumsporozoite protein YP_004554950.1 KEGG: sjp:SJA_C1-29170 ArsR-family transcriptional regulator; PFAM: Methyltransferase type 11; HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR YP_004554951.1 TIGRFAM: 5,10-methylenetetrahydrofolate reductase; KEGG: sjp:SJA_C1-29160 methylenetetrahydrofolate reductase (NADPH); PFAM: Methylenetetrahydrofolate reductase YP_004554952.1 KEGG: sjp:SJA_C1-29150 homocysteine S-methyltransferase; PFAM: Homocysteine S-methyltransferase YP_004554953.1 TIGRFAM: 5-methyltetrahydrofolate--homocysteine methyltransferase; KEGG: sjp:SJA_C1-29140 5-methyltetrahydrofolate-homocysteine methyltransferase; PFAM: Dihydropteroate synthase, DHPS; Methionine synthase, cobalamin (vitamin B12)-binding module, cap; Cobalamin (vitamin B12)-binding; Vitamin B12 dependent methionine synthase, activation region YP_004554954.1 KEGG: sjp:SJA_C1-29130 putative beta-lactamase class A; PFAM: Beta-lactamase-related YP_004554955.1 KEGG: sjp:SJA_C1-29120 putative alpha/beta hydrolase YP_004554956.1 TIGRFAM: L-aspartate oxidase; KEGG: sjp:SJA_C1-29110 L-aspartate oxidase; PFAM: Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal; Fumarate reductase/succinate dehydrogenase flavoprotein, C-terminal YP_004554957.1 PFAM: ABC transporter-like; KEGG: sjp:SJA_C1-29090 ABC-type transport system ATPase component; SMART: ATPase, AAA+ type, core YP_004554958.1 TIGRFAM: Phosphoribosylglycinamide formyltransferase; KEGG: sjp:SJA_C1-29080 phosphoribosylglycinamide formyltransferase; PFAM: Formyl transferase, N-terminal YP_004554959.1 TIGRFAM: Phosphoribosylformylglycinamidine cyclo-ligase; KEGG: sjp:SJA_C1-29070 phosphoribosylformylglycinamidine cyclo-ligase; PFAM: AIR synthase related protein, C-terminal; AIR synthase related protein YP_004554960.1 KEGG: sjp:SJA_C1-29060 hypothetical protein YP_004554961.1 KEGG: sjp:SJA_C1-29050 putative ATPase YP_004554962.1 PFAM: Polyphosphate kinase; TIGRFAM: polyphosphate kinase 1; HAMAP: Polyphosphate kinase; KEGG: sjp:SJA_C1-29040 polyphosphate kinase YP_004554963.1 PFAM: Ppx/GppA phosphatase; KEGG: sjp:SJA_C1-29020 exopolyphosphatase YP_004554964.1 KEGG: sjp:SJA_C1-06850 hypothetical protein; TIGRFAM: Protein of unknown function DUF165; PFAM: Protein of unknown function DUF165 YP_004554965.1 TIGRFAM: Acetylglutamate kinase; KEGG: sjp:SJA_C1-06840 acetylglutamate kinase; PFAM: Aspartate/glutamate/uridylate kinase YP_004554966.1 PFAM: Protein of unknown function YGGT; KEGG: sjp:SJA_C1-06830 hypothetical protein YP_004554967.1 KEGG: sjp:SJA_C1-06820 hypothetical protein; HAMAP: Protein of unknown function DUF167; PFAM: Protein of unknown function DUF167 YP_004554968.1 HAMAP: Tetrahydrofolate dehydrogenase/cyclohydrolase; KEGG: sjp:SJA_C1-06810 methylenetetrahydrofolate dehydrogenase (NADP+); PFAM: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain YP_004554969.1 KEGG: sjp:SJA_C1-06800 hypothetical protein YP_004554970.1 KEGG: sjp:SJA_C1-06790 MarC-family membrane protein; TIGRFAM: Multiple antibiotic resistance (MarC)-related; PFAM: Multiple antibiotic resistance (MarC)-related YP_004554971.1 PFAM: Protein of unknown function DUF559; KEGG: rpe:RPE_0439 hypothetical protein YP_004554972.1 PFAM: Outer membrane protein, OmpA/MotB, C-terminal; Rickettsia 17kDa surface antigen; KEGG: sjp:SJA_C1-29010 OmpA-family protein YP_004554973.1 PFAM: Protein of unknown function DUF21; Cystathionine beta-synthase, core; Transporter-associated region; KEGG: sjp:SJA_C1-29000 putative hemolysin YP_004554974.1 KEGG: sjp:SJA_C1-28990 putative kinase YP_004554975.1 PFAM: Cytochrome c, class I; KEGG: sjp:SJA_C1-28980 cytochrome c YP_004554976.1 KEGG: sjp:SJA_C1-28970 prephenate dehydratase; PFAM: Prephenate dehydratase YP_004554977.1 PFAM: Fatty acid hydroxylase; KEGG: sjp:SJA_C1-28960 sterol desaturase YP_004554978.1 PFAM: Protein of unknown function DUF2141; KEGG: sjp:SJA_C1-28950 hypothetical protein YP_004554979.1 PFAM: Thioredoxin domain; KEGG: sjp:SJA_C1-28940 putative thioredoxin YP_004554980.1 KEGG: sjp:SJA_C1-28930 Lon-like peptidase; PFAM: Peptidase S16, lon N-terminal; SMART: Peptidase S16, lon N-terminal YP_004554981.1 KEGG: sjp:SJA_C1-28320 Xre-family transcriptional regulator; PFAM: Protein of unknown function DUF2083,transcriptional regulator; Protein of unknown function DUF955; Helix-turn-helix type 3; SMART: Helix-turn-helix type 3 YP_004554982.1 KEGG: sjp:SJA_C1-28310 isocitrate lyase; PFAM: Isocitrate lyase/phosphorylmutase YP_004554983.1 PFAM: Glutathione S-transferase, N-terminal; KEGG: sjp:SJA_C1-28300 glutathione S-transferase YP_004554984.1 TIGRFAM: 3-isopropylmalate dehydratase, large subunit region; HAMAP: 3-isopropylmalate dehydratase, large subunit region; KEGG: sjp:SJA_C1-28290 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit; PFAM: Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha YP_004554985.1 KEGG: sjp:SJA_C1-28280 hypothetical protein YP_004554986.1 TIGRFAM: 3-isopropylmalate dehydratase, small subunit region; HAMAP: 3-isopropylmalate dehydratase, small subunit region; KEGG: sjp:SJA_C1-28270 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit; PFAM: Aconitase A/isopropylmalate dehydratase small subunit, swivel YP_004554987.1 PFAM: Protein of unknown function DUF1476; KEGG: sjp:SJA_C1-28260 hypothetical protein YP_004554988.1 PFAM: BolA-like protein; KEGG: sjp:SJA_C1-28250 BolA-like protein YP_004554989.1 KEGG: sjp:SJA_C1-28240 monothiol glutaredoxin; TIGRFAM: Glutaredoxin-related protein; PFAM: Glutaredoxin YP_004554990.1 PFAM: Penicillinase repressor; KEGG: sjp:SJA_C1-28230 BlaI-family transcriptional regulator YP_004554991.1 PFAM: Peptidase M56, BlaR1; KEGG: sjp:SJA_C1-28220 TonB-like protein YP_004554992.1 TIGRFAM: Putative oxygen-independent coproporphyrinogen III oxidase; PFAM: HemN, C-terminal; Radical SAM; KEGG: sjp:SJA_C1-28210 oxygen-independent coproporphyrinogen III oxidase; SMART: Elongator protein 3/MiaB/NifB YP_004554993.1 KEGG: sjp:SJA_C1-28200 pathogenesis-related protein; PFAM: SCP-like extracellular; SMART: Allergen V5/Tpx-1 related YP_004554994.1 HAMAP: Nucleoside-triphosphatase rdgB; KEGG: sjp:SJA_C1-10650 putative deoxyribonucleotide triphosphate pyrophosphatase; PFAM: Ham1-like protein YP_004554995.1 PFAM: Exoribonuclease, phosphorolytic domain 1; Exoribonuclease, phosphorolytic domain 2; TIGRFAM: Ribonuclease phosphorolytic, bacterial-type; HAMAP: Ribonuclease phosphorolytic, bacterial-type; KEGG: sjp:SJA_C1-10660 ribonuclease PH YP_004554996.1 KEGG: sjp:SJA_C1-10670 hypothetical protein YP_004554997.1 TIGRFAM: Negative regulator of class I heat shock protein; HAMAP: Negative regulator of class I heat shock protein; KEGG: sjp:SJA_C1-10680 heat-inducible transcriptional repressor; PFAM: Negative regulator of class I heat shock protein YP_004554998.1 KEGG: sjp:SJA_C1-10690 molecular chaperone GrpE; HAMAP: GrpE nucleotide exchange factor; PFAM: GrpE nucleotide exchange factor YP_004554999.1 PFAM: Transcriptional regulator PadR N-terminal-like; KEGG: rpc:RPC_0529 PadR-like family transcriptional regulator YP_004555000.1 PFAM: Uncharacterised conserved protein UCP028291; KEGG: nar:Saro_0672 hypothetical protein YP_004555001.1 PFAM: Crossover junction endodeoxyribonuclease RuvC; TIGRFAM: Crossover junction endodeoxyribonuclease RuvC; HAMAP: Crossover junction endodeoxyribonuclease RuvC; KEGG: sjp:SJA_C1-33570 crossover junction endodeoxyribonuclease YP_004555002.1 TIGRFAM: Protein of unknown function DUF28; HAMAP: Protein of unknown function DUF28; KEGG: sjp:SJA_C1-33560 hypothetical protein; PFAM: Protein of unknown function DUF28 YP_004555003.1 KEGG: sjp:SJA_C1-33550 hypothetical protein; HAMAP: UPF0145 protein ybjQ; PFAM: Uncharacterised protein family UPF0145 YP_004555004.1 KEGG: sjp:SJA_C1-33540 hypothetical protein; HAMAP: UPF0335 protein; PFAM: Protein of unknown function DUF2312 YP_004555005.1 PFAM: Protein of unknown function DUF1244; KEGG: sjp:SJA_C1-33530 hypothetical protein YP_004555006.1 TIGRFAM: Pyruvate kinase; KEGG: sjp:SJA_C1-33520 pyruvate kinase; PFAM: Pyruvate kinase, barrel; Pyruvate kinase, alpha/beta YP_004555007.1 KEGG: sjp:SJA_C1-33510 putative hydrolase; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase-like hydrolase YP_004555008.1 PFAM: Ribosomal protein L36; KEGG: sjp:SJA_C1-33500 ribosomal protein L36 YP_004555009.1 KEGG: sjp:SJA_C1-33490 hypothetical protein YP_004555010.1 PFAM: Peptidase M14, carboxypeptidase A; KEGG: sjp:SJA_C1-33480 putative carboxypeptidase YP_004555011.1 KEGG: sjp:SJA_C1-28360 hypothetical protein YP_004555012.1 PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: sjp:SJA_C1-28350 ABC-type transport system periplasmic component YP_004555013.1 KEGG: sjp:SJA_C1-28340 hypothetical protein YP_004555014.1 KEGG: sjp:SJA_C1-32580 ATP-dependent Clp protease adaptor protein ClpS; HAMAP: ATP-dependent Clp protease adapter protein clpS; PFAM: Adaptor protein ClpS, core YP_004555015.1 KEGG: sjp:SJA_C1-07230 glycerol-3-phosphate dehydrogenase; PFAM: FAD dependent oxidoreductase YP_004555016.1 KEGG: sjp:SJA_C1-07240 glycerol kinase; PFAM: Carbohydrate kinase, FGGY, N-terminal; Carbohydrate kinase, FGGY, C-terminal YP_004555017.1 TIGRFAM: Diguanylate cyclase, predicted; PAS; PFAM: Diguanylate cyclase, predicted; MASE1; PAS fold; KEGG: sjp:SJA_C1-07250 putative diguanylate cyclase; SMART: Diguanylate cyclase, predicted; PAS YP_004555018.1 KEGG: sjp:SJA_C1-07260 hypothetical protein YP_004555019.1 TIGRFAM: GlpX; KEGG: sjp:SJA_C1-07270 fructose-1,6-bisphosphatase II; PFAM: GlpX YP_004555020.1 PFAM: Homoserine dehydrogenase, catalytic; Aspartate/homoserine dehydrogenase, NAD-binding; Amino acid-binding ACT; KEGG: sjp:SJA_C1-07280 homoserine dehydrogenase YP_004555021.1 KEGG: sjp:SJA_C1-07290 hypothetical protein YP_004555022.1 TIGRFAM: TonB, C-terminal; KEGG: sjp:SJA_C1-07300 TonB-like protein YP_004555023.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: sjp:SJA_C1-07310 biopolymer transport protein ExbB YP_004555024.1 PFAM: Biopolymer transport protein ExbD/TolR; KEGG: sjp:SJA_C1-07320 biopolymer transport protein ExbD YP_004555025.1 PFAM: Biopolymer transport protein ExbD/TolR; KEGG: sjp:SJA_C1-07330 biopolymer transport protein ExbD YP_004555027.1 PFAM: Type IV pilus assembly PilZ; KEGG: sjp:SJA_C1-07340 hypothetical protein YP_004555028.1 PFAM: ABC transporter-like; ABC transporter, transmembrane region; KEGG: sjp:SJA_C1-07380 ATP-binding cassette protein; SMART: ATPase, AAA+ type, core YP_004555029.1 KEGG: sjp:SJA_C1-07390 hypothetical protein YP_004555030.1 PFAM: Mandelate racemase/muconate lactonizing enzyme, C-terminal; Mandelate racemase/muconate lactonizing enzyme, N-terminal; KEGG: sjp:SJA_C1-07400 mandelate racemase/muconate lactonizing enzyme-like protein YP_004555031.1 KEGG: sjp:SJA_C1-07410 hypothetical protein YP_004555032.1 PFAM: Mechanosensitive ion channel MscS; KEGG: sjp:SJA_C1-07420 putative mechanosensitive ion channel YP_004555033.1 KEGG: sjp:SJA_C1-07440 hypothetical protein YP_004555034.1 KEGG: sjp:SJA_C1-07450 O-antigen polymerase; TIGRFAM: Conserved hypothetical protein CHP03097, O-antigen ligase-related; PFAM: O-antigen ligase-related YP_004555035.1 PFAM: Glycosyl transferase, group 1; KEGG: sjp:SJA_C1-07480 putative glycosyltransferase YP_004555036.1 KEGG: sjp:SJA_C1-07490 hypothetical protein YP_004555037.1 KEGG: sjp:SJA_C1-07500 hypothetical protein YP_004555038.1 KEGG: sjp:SJA_C1-07510 hypothetical protein YP_004555039.1 PFAM: Peptidase S24/S26A/S26B, conserved region; KEGG: sjp:SJA_C1-07520 LexA-family protein YP_004555040.1 PFAM: XdhC- CoxI; KEGG: sjp:SJA_C1-07530 xanthine dehydrogenase accessory factor YP_004555041.1 PFAM: Protein of unknown function DUF466; KEGG: sjp:SJA_C1-07540 hypothetical protein YP_004555042.1 PFAM: Carbon starvation protein CstA; KEGG: sjp:SJA_C1-07550 carbon starvation protein CstA YP_004555043.1 KEGG: sjp:SJA_C1-07560 2'-5' RNA ligase YP_004555044.1 PFAM: PhnA protein, C-terminal; KEGG: sjp:SJA_C1-07570 putative phosphonate metabolizing protein YP_004555045.1 TIGRFAM: GTP-binding protein, ribosome biogenesis, YsxC; HAMAP: GTP-binding protein, ribosome biogenesis, YsxC; KEGG: sjp:SJA_C1-07580 GTP-binding protein; PFAM: GTP-binding protein, HSR1-related YP_004555046.1 TIGRFAM: Membrane insertion protein, OxaA/YidC, core; Membrane insertion protein, OxoA/YidC, N-terminal; HAMAP: Membrane protein oxaA; KEGG: sjp:SJA_C1-07590 preprotein translocase YidC subunit; PFAM: Membrane insertion protein, OxaA/YidC YP_004555047.1 TIGRFAM: Protein of unknown function DUF37; HAMAP: Protein of unknown function DUF37; KEGG: sjp:SJA_C1-07600 hypothetical protein; PFAM: Protein of unknown function DUF37 YP_004555048.1 KEGG: sjp:SJA_C1-07610 RNase P protein component; TIGRFAM: Ribonuclease P; PFAM: Ribonuclease P YP_004555049.1 TIGRFAM: Ribosomal protein L34; HAMAP: 50S ribosomal protein L34; KEGG: sjp:SJA_C1-07620 ribosomal protein L34; PFAM: Ribosomal protein L34 YP_004555050.1 PFAM: DSBA oxidoreductase; KEGG: sjp:SJA_C1-07630 DsbA oxidoreductase YP_004555051.1 PFAM: Peptidase M48, Ste24p; KEGG: sjp:SJA_C1-07640 putative Zn-dependent protease YP_004555052.1 KEGG: sjp:SJA_C1-08190 ubiquinone biosynthesis protein; TIGRFAM: 2-polyprenylphenol 6-hydroxylase; PFAM: ABC-1 YP_004555053.1 TIGRFAM: UbiE/COQ5 methyltransferase; HAMAP: UbiE/COQ5 methyltransferase; KEGG: sjp:SJA_C1-08200 ubiquinone biosynthesis methyltransferase; PFAM: UbiE/COQ5 methyltransferase YP_004555054.1 PFAM: DNA glycosylase/AP lyase, catalytic domain; DNA glycosylase/AP lyase, H2TH DNA-binding; TIGRFAM: DNA glycosylase/AP lyase; HAMAP: Formamidopyrimidine-DNA glycosylase; KEGG: sjp:SJA_C1-08210 formamidopyrimidine-DNA glycosylase YP_004555055.1 TIGRFAM: Ribosomal protein S20; HAMAP: Ribosomal protein S20; KEGG: sjp:SJA_C1-08220 ribosomal protein S20; PFAM: Ribosomal protein S20 YP_004555056.1 PFAM: Major facilitator superfamily MFS-1; KEGG: bch:Bcen2424_3228 major facilitator transporter YP_004555057.1 PFAM: Protein of unknown function DUF849, prokaryotic; KEGG: bmj:BMULJ_01555 hypothetical protein YP_004555058.1 PFAM: Thioesterase superfamily; KEGG: pla:Plav_2975 thioesterase superfamily protein YP_004555059.1 PFAM: Amidohydrolase 2; KEGG: cak:Caul_3775 amidohydrolase 2 YP_004555060.1 PFAM: Amidohydrolase 2; KEGG: cak:Caul_3770 amidohydrolase 2 YP_004555061.1 KEGG: vap:Vapar_4942 alpha/beta hydrolase fold-3 domain protein YP_004555062.1 PFAM: Major facilitator superfamily MFS-1; KEGG: hse:Hsero_1283 major facilitator superfamily permease YP_004555063.1 KEGG: hvo:HVO_A0546 short-chain family oxidoreductase; PFAM: Short-chain dehydrogenase/reductase SDR YP_004555064.1 PFAM: Carboxymuconolactone decarboxylase; KEGG: bja:blr2255 hypothetical protein YP_004555065.1 PFAM: MmgE/PrpD; KEGG: bpt:Bpet0850 hypothetical protein YP_004555066.1 KEGG: bph:Bphy_5791 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR YP_004555067.1 KEGG: bpt:Bpet2258 putative beta-hydroxyacid dehydrogenase; PFAM: 6-phosphogluconate dehydrogenase, NAD-binding YP_004555068.1 KEGG: bxe:Bxe_B0967 putative Zn-dependent hydrolase YP_004555069.1 KEGG: bsb:Bresu_2044 hypothetical protein YP_004555070.1 PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: swi:Swit_2291 TonB-dependent receptor YP_004555071.1 PFAM: Protein of unknown function DUF2189, transmembrane; KEGG: sjp:SJA_C2-02680 putative integral membrane protein YP_004555072.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: sjp:SJA_C2-02670 LysR-family transcriptional regulator YP_004555073.1 PFAM: Dihydroxy-acid/6-phosphogluconate dehydratase; TIGRFAM: Dihydroxy-acid dehydratase; HAMAP: Dihydroxy-acid dehydratase; KEGG: sjp:SJA_C2-02660 dihydroxy-acid dehydratase YP_004555074.1 KEGG: sjp:SJA_C2-02650 hypothetical protein YP_004555075.1 KEGG: sjp:SJA_C2-02640 MarR-family transcriptional regulator; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR YP_004555076.1 PFAM: Secretion protein HlyD; KEGG: sjp:SJA_C2-02630 multidrug resistance efflux pump YP_004555077.1 KEGG: sjp:SJA_C2-02620 putative MFS permease; TIGRFAM: Drug resistance transporter EmrB/QacA subfamily; PFAM: Major facilitator superfamily MFS-1 YP_004555078.1 KEGG: sjp:SJA_C2-02610 outer membrane protein OprN; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT; PFAM: Outer membrane efflux protein YP_004555079.1 KEGG: cja:CJA_3357 HD domain protein; TIGRFAM: HDIG; PFAM: Metal-dependent phosphohydrolase, HD region, subdomain YP_004555080.1 KEGG: sjp:SJA_C1-09640 hypothetical protein YP_004555081.1 PFAM: DR1885-like metal-binding protein; KEGG: sjp:SJA_C1-09650 hypothetical protein YP_004555082.1 TIGRFAM: Chaperone DnaK; HAMAP: Chaperone DnaK; KEGG: sjp:SJA_C1-09660 molecular chaperone DnaK; PFAM: Heat shock protein 70 YP_004555083.1 SMART: Heat shock protein DnaJ, N-terminal; TIGRFAM: Chaperone DnaJ; KEGG: sjp:SJA_C1-09670 molecular chaperone DnaJ; HAMAP: Chaperone protein dnaJ; PFAM: Chaperone DnaJ, C-terminal; Heat shock protein DnaJ, N-terminal; Heat shock protein DnaJ, cysteine-rich region YP_004555084.1 PFAM: Amino acid permease-associated region; KEGG: sal:Sala_3167 amino acid permease-associated region YP_004555085.1 PFAM: Methyltransferase type 11; KEGG: sjp:SJA_C2-02600 putative SAM-dependent methyltransferase YP_004555086.1 PFAM: Monooxygenase, FAD-binding; KEGG: sjp:SJA_C2-02590 putative oxidoreductase YP_004555087.1 KEGG: sjp:SJA_C2-02580 putative naringenin-chalcone synthase; PFAM: Chalcone/stilbene synthase, N-terminal; Chalcone/stilbene synthase, C-terminal YP_004555088.1 KEGG: sjp:SJA_C2-02570 KUP system potassium uptake protein; HAMAP: Low affinity potassium transport system protein kup; PFAM: K+ potassium transporter YP_004555089.1 KEGG: xau:Xaut_1569 GntR family transcriptional regulator; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: HTH transcriptional regulator, GntR YP_004555090.1 PFAM: Luciferase-like, subgroup; KEGG: ara:Arad_7171 luciferase protein YP_004555091.1 KEGG: hmu:Hmuk_2611 alpha/beta hydrolase fold-3 domain protein YP_004555092.1 PFAM: Major facilitator superfamily MFS-1; KEGG: pst:PSPTO_3052 major facilitator family transporter YP_004555093.1 PFAM: Flavin reductase-like, FMN-binding; KEGG: swi:Swit_4109 flavin reductase domain-containing protein YP_004555094.1 PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; KEGG: bsb:Bresu_2103 TonB-dependent receptor YP_004555095.1 KEGG: rce:RC1_2696 AMP-dependent synthetase and ligase, putative; PFAM: AMP-dependent synthetase/ligase YP_004555096.1 SMART: HTH transcriptional regulator, Crp; KEGG: sjp:SJA_C1-11020 Crp/Fnr-family transcriptional regulator YP_004555097.1 TIGRFAM: PAS; PFAM: PAS fold; Signal transduction histidine kinase, HWE region; KEGG: sjp:SJA_C1-10930 putative sensor histidine kinase; SMART: PAS; PAC motif YP_004555098.1 KEGG: sjp:SJA_C1-07970 cyclic nucleotide-binding domain protein; PFAM: Cyclic nucleotide-binding; HTH transcriptional regulator, Crp; SMART: HTH transcriptional regulator, Crp; Cyclic nucleotide-binding YP_004555099.1 KEGG: sjp:SJA_C2-05320 hypothetical protein YP_004555101.1 KEGG: sjp:SJA_C1-11260 Crp/Fnr-family transcriptional regulator; PFAM: Cyclic nucleotide-binding; HTH transcriptional regulator, Crp; SMART: HTH transcriptional regulator, Crp YP_004555102.1 PFAM: Signal transduction histidine kinase, HWE region; KEGG: sjp:SJA_C1-11280 putative signal transduction histidine kinase YP_004555103.1 PFAM: Haemerythrin/HHE cation-binding motif; KEGG: swi:Swit_4096 hemerythrin HHE cation binding domain-containing protein YP_004555104.1 manually curated; KEGG: sjp:SJA_C1-10970 hypothetical protein YP_004555105.1 KEGG: sjp:SJA_C1-10980 CheY-like response regulator YP_004555107.1 PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: sjp:SJA_C1-26480 SDR-family protein YP_004555108.1 KEGG: sjp:SJA_C1-11250 hypothetical protein YP_004555109.1 PFAM: Alcohol dehydrogenase GroES-like; Alcohol dehydrogenase, zinc-binding; KEGG: sjp:SJA_C1-26490 putative dehydrogenase YP_004555110.1 PFAM: Streptomyces cyclase/dehydrase; KEGG: sjp:SJA_C1-26500 putative cyclase/dehydrase YP_004555111.1 KEGG: bmr:BMI_II1154 outer membrane autotransporter; TIGRFAM: Outer membrane autotransporter barrel; Autotransporter-associated beta strand repeat; PFAM: Autotransporter beta-domain; Filamentous haemagglutinin, bacterial YP_004555112.1 KEGG: nar:Saro_3035 sulfotransferase; PFAM: Tetratricopeptide TPR2; Sulfotransferase; SMART: Tetratricopeptide repeat YP_004555113.1 KEGG: sjp:SJA_C1-27050 putative permease; manually curated; PFAM: Protein of unknown function DUF6, transmembrane YP_004555114.1 PFAM: Crotonase, core; KEGG: sjp:SJA_C1-27060 putative enoyl-CoA hydratase YP_004555115.1 PFAM: Bile acid:sodium symporter; KEGG: sjp:SJA_C1-27070 putative sodium/bile acid symporter YP_004555116.1 PFAM: FAD dependent oxidoreductase; KEGG: sjp:SJA_C1-27090 putative dehydrogenase/oxidoreductase YP_004555117.1 PFAM: Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding; Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding region; TIGRFAM: Aspartate carbamoyltransferase, eukaryotic; HAMAP: Aspartate carbamoyltransferase; KEGG: sjp:SJA_C1-27100 aspartate carbamoyltransferase catalytic chain YP_004555119.1 PFAM: Amidohydrolase 1; KEGG: sjp:SJA_C1-27110 dihydroorotase YP_004555120.1 KEGG: sjp:SJA_C1-27120 preprotein translocase subunit SecE; TIGRFAM: SecE subunit of protein translocation complex; PFAM: Protein secE/sec61-gamma protein YP_004555121.1 TIGRFAM: Transcription antitermination protein, NusG; PFAM: Transcription antitermination protein, NusG, N-terminal; KOW; KEGG: sjp:SJA_C1-27130 transcriptional antiterminator NusG; SMART: Transcription antitermination protein, NusG, N-terminal; KOW YP_004555122.1 TIGRFAM: Ribosomal protein L11, bacterial-type; PFAM: Ribosomal protein L11, N-terminal; Ribosomal protein L11, C-terminal; KEGG: sjp:SJA_C1-27140 ribosomal protein L11; SMART: Ribosomal protein L11 YP_004555123.1 KEGG: sjp:SJA_C1-27150 ribosomal protein L1; TIGRFAM: Ribosomal protein L1, bacterial-type; PFAM: Ribosomal protein L1 YP_004555124.1 KEGG: sjp:SJA_C1-27170 putative helicase; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; DNA/RNA helicase, C-terminal; DbpA, RNA-binding; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal YP_004555125.1 PFAM: Cation/H+ exchanger; Regulator of K+ conductance, N-terminal; KEGG: sjp:SJA_C1-27180 putative potassium-efflux system protein YP_004555126.1 KEGG: sjp:SJA_C1-27190 hypothetical protein YP_004555128.1 TIGRFAM: Ribosomal protein L21; HAMAP: Ribosomal protein L21; KEGG: sjp:SJA_C1-27210 ribosomal protein L21; PFAM: Ribosomal protein L21 YP_004555129.1 TIGRFAM: Ribosomal protein L27; HAMAP: Ribosomal protein L27; KEGG: sjp:SJA_C1-27220 ribosomal protein L27; PFAM: Ribosomal protein L27 YP_004555130.1 PFAM: GCN5-related N-acetyltransferase; KEGG: sjp:SJA_C1-27230 putative acetyltransferase YP_004555131.1 TIGRFAM: GTP-binding protein Obg/CgtA; Small GTP-binding protein; HAMAP: GTPase obg; KEGG: sjp:SJA_C1-27240 putative GTP-binding protein; PFAM: GTP1/OBG subdomain; GTP-binding protein, HSR1-related YP_004555132.1 SMART: Pseudouridine synthase/archaeosine transglycosylase; TIGRFAM: Glutamate 5-kinase, ProB-related; KEGG: sjp:SJA_C1-27250 glutamate 5-kinase; HAMAP: Glutamate 5-kinase; PFAM: Aspartate/glutamate/uridylate kinase; Pseudouridine synthase/archaeosine transglycosylase YP_004555133.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: sjp:SJA_C1-27260 putative epimerase YP_004555134.1 PFAM: Haemerythrin/HHE cation-binding motif; KEGG: sjp:SJA_C1-26530 hypothetical protein YP_004555135.1 KEGG: eli:ELI_04125 hypothetical protein; TIGRFAM: DNA ligase D; DNA polymerase LigD, ligase region; DNA ligase D, 3'-phosphoesterase domain; DNA polymerase LigD, polymerase domain; PFAM: ATP dependent DNA ligase, central; ATP dependent DNA ligase, C-terminal; DNA primase, small subunit YP_004555136.1 SMART: DNA helicase, ATP-dependent, Ku type; TIGRFAM: Ku, prokaryotic type; KEGG: nar:Saro_1694 Ku protein; HAMAP: DNA repair protein; PFAM: DNA helicase, ATP-dependent, Ku type YP_004555137.1 PFAM: PRC-barrel; KEGG: mno:Mnod_5672 PRC-barrel domain protein YP_004555138.1 KEGG: sjp:SJA_C2-05530 SDR-family protein; PFAM: Short-chain dehydrogenase/reductase SDR YP_004555139.1 KEGG: swi:Swit_5285 putative DNA topoisomerase I YP_004555140.1 PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: cak:Caul_2663 TonB-dependent receptor YP_004555141.1 KEGG: eli:ELI_11850 hypothetical protein YP_004555142.1 PFAM: Protein of unknown function DUF2157, membrane; KEGG: eli:ELI_11855 hypothetical protein YP_004555143.1 PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: cse:Cseg_3483 TonB-dependent receptor YP_004555144.1 KEGG: sjp:SJA_C2-02510 hypothetical protein YP_004555146.1 KEGG: sjp:SJA_C2-00250 hypothetical protein YP_004555147.1 KEGG: swi:Swit_5248 catalase; PFAM: Catalase related subgroup; Catalase-related immune responsive YP_004555148.1 PFAM: Protein of unknown function DUF519; KEGG: nar:Saro_2915 hypothetical protein YP_004555150.1 PFAM: Integrase, catalytic core, phage; KEGG: sal:Sala_0048 phage integrase YP_004555152.1 KEGG: azc:AZC_0618 regulatory protein; PFAM: Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region YP_004555153.1 PFAM: Peptidase M23; KEGG: nar:Saro_3157 peptidase M23B YP_004555154.1 TIGRFAM: VCBS repeat domain; KEGG: ddd:Dda3937_01477 putative hemagglutinin/hemolysin-related protein YP_004555155.1 KEGG: cvi:CV_1736 secretion protein; TIGRFAM: Type I secretion membrane fusion protein, HlyD; PFAM: Secretion protein HlyD YP_004555156.1 PFAM: ABC transporter-like; ABC transporter, transmembrane region; KEGG: cvi:CV_1735 ATP-binding/permease fusion ABC transporter; SMART: ATPase, AAA+ type, core YP_004555157.1 PFAM: Outer membrane efflux protein; KEGG: cvi:CV_1734 outer membrane protein YP_004555160.1 KEGG: ade:Adeh_2705 response regulator receiver YP_004555162.1 PFAM: 3'-5' exonuclease, PolB-like; KEGG: mch:Mchl_5668 hypothetical protein YP_004555165.1 KEGG: sal:Sala_0142 hypothetical protein YP_004555166.1 KEGG: nar:Saro_3911 hypothetical protein YP_004555167.1 KEGG: sme:SMa0444 TRm1b transposase; manually curated; PFAM: Integrase, catalytic core YP_004555168.1 PFAM: Transposase IS3/IS911; KEGG: sme:SM_b20918 transposase of insertion sequence ISRm1 orfA protein YP_004555169.1 KEGG: sjp:SJA_C1-27030 MarR-family transcriptional regulator; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR YP_004555170.1 KEGG: sjp:SJA_C2-01660 NAD(P) transhydrogenase subunit beta; PFAM: NAD(P) transhydrogenase, beta subunit YP_004555171.1 KEGG: sjp:SJA_C2-01670 NAD(P) transhydrogenase subunit alpha YP_004555172.1 KEGG: sjp:SJA_C2-01680 alanine dehydrogenase; PFAM: Alanine dehydrogenase/PNT, C-terminal; Alanine dehydrogenase/PNT, N-terminal YP_004555173.1 KEGG: sjp:SJA_C2-01690 GntR-family transcriptional regulator YP_004555174.1 KEGG: bja:bll2682 maleylacetate reductase; PFAM: Alcohol dehydrogenase, iron-type YP_004555175.1 PFAM: Monooxygenase, FAD-binding; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: bcj:BCAL1339 3-(3-hydroxyphenyl)propionate hydroxylase YP_004555176.1 KEGG: reh:H16_B0972 dipeptidyl aminopeptidase/acylaminoacyl-peptidase related protein YP_004555177.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: bph:Bphy_4455 LysR family transcriptional regulator YP_004555178.1 KEGG: rpx:Rpdx1_4171 thioesterase superfamily protein; TIGRFAM: Phenylacetic acid degradation-related protein; PFAM: Thioesterase superfamily YP_004555179.1 KEGG: azl:AZL_b02890 hypothetical protein YP_004555180.1 KEGG: sjp:SJA_C1-26140 hypothetical protein YP_004555181.1 KEGG: nar:Saro_0809 beta-ketothiolase; TIGRFAM: Thiolase YP_004555182.1 PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: nar:Saro_0521 TetR family transcriptional regulator YP_004555183.1 PFAM: Luciferase-like, subgroup; KEGG: nar:Saro_0522 luciferase-like YP_004555184.1 PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: nar:Saro_0516 TetR family transcriptional regulator YP_004555185.1 PFAM: SMP-30/Gluconolaconase/LRE-like region; KEGG: nar:Saro_0517 gluconolactonase YP_004555186.1 PFAM: Crotonase, core; KEGG: bcm:Bcenmc03_6879 enoyl-CoA hydratase YP_004555187.1 KEGG: fri:FraEuI1c_5454 luciferase-like, subgroup; PFAM: Luciferase-like, subgroup YP_004555188.1 KEGG: nar:Saro_0519 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase YP_004555189.1 TIGRFAM: DHBP synthase RibB; HAMAP: 3,4-dihydroxy-2-butanone 4-phosphate synthase; KEGG: nar:Saro_0520 GTP cyclohydrolase II; PFAM: DHBP synthase RibB; GTP cyclohydrolase II YP_004555190.1 PFAM: Ferredoxin; KEGG: nar:Saro_1115 ferredoxin YP_004555191.1 PFAM: Flavin reductase-like, FMN-binding; KEGG: sjp:SJA_C2-03670 flavin reductase-like protein YP_004555192.1 KEGG: nar:Saro_0514 cytochrome P450 YP_004555194.1 KEGG: nar:Saro_0512 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR YP_004555195.1 PFAM: Crotonase, core; KEGG: nar:Saro_0511 enoyl-CoA hydratase/isomerase YP_004555196.1 KEGG: mpa:MAP1739c FabG3_1; PFAM: Short-chain dehydrogenase/reductase SDR YP_004555197.1 KEGG: nar:Saro_0510 cyclohexanone monooxygenase YP_004555198.1 PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: nar:Saro_0523 TonB-dependent receptor YP_004555199.1 PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: swi:Swit_4282 TonB-dependent receptor, plug YP_004555200.1 PFAM: Sulfatase; KEGG: nar:Saro_2470 sulfatase YP_004555201.1 PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: nar:Saro_0521 TetR family transcriptional regulator YP_004555202.1 KEGG: sjp:SJA_C1-26310 hypothetical protein YP_004555203.1 PFAM: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; KEGG: sjp:SJA_C2-01490 peroxiredoxin YP_004555204.1 KEGG: sal:Sala_2116 succinate-semialdehyde dehydrogenase (NAD(P)+); PFAM: Aldehyde dehydrogenase YP_004555205.1 PFAM: Major facilitator superfamily MFS-1; KEGG: nar:Saro_3510 major facilitator transporter YP_004555206.1 KEGG: nar:Saro_3511 2-keto-4-pentenoate hydratase-like protein YP_004555207.1 KEGG: nar:Saro_3512 D-altronate dehydratase; PFAM: D-galactarate dehydratase/Altronate hydrolase, C-terminal; SAF domain YP_004555208.1 KEGG: nar:Saro_3513 LacI family transcription regulator; PFAM: HTH transcriptional regulator, LacI; Periplasmic binding protein/LacI transcriptional regulator; SMART: HTH transcriptional regulator, LacI YP_004555209.1 HAMAP: 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; KEGG: pzu:PHZ_c2451 5-keto-4-deoxyuronate isomerase; PFAM: 5-keto 4-deoxyuronate isomerase YP_004555210.1 TIGRFAM: 2-deoxy-D-gluconate 3-dehydrogenase; KEGG: sal:Sala_3035 2-deoxy-D-gluconate 3-dehydrogenase; PFAM: Short-chain dehydrogenase/reductase SDR YP_004555211.1 PFAM: Carbohydrate/purine kinase; KEGG: nar:Saro_3516 ribokinase-like domain-containing protein YP_004555212.1 PFAM: Cupin 2, conserved barrel; KEGG: nar:Saro_3518 cupin 2 domain-containing protein YP_004555213.1 KEGG: nar:Saro_3519 hypothetical protein YP_004555214.1 PFAM: Dienelactone hydrolase; KEGG: nar:Saro_3521 esterase/lipase-like protein YP_004555215.1 HAMAP: Uronate isomerase; KEGG: nar:Saro_3677 glucuronate isomerase; PFAM: Uronate isomerase YP_004555216.1 KEGG: nar:Saro_3678 mannitol dehydrogenase domain-containing protein; PFAM: Mannitol dehydrogenase, C-terminal; Mannitol dehydrogenase, N-terminal YP_004555217.1 PFAM: Dihydrodipicolinate synthetase; TIGRFAM: 5-dehydro-4-deoxyglucarate dehydratase; HAMAP: 5-dehydro-4-deoxyglucarate dehydratase; KEGG: bja:blr5871 5-dehydro-4-deoxyglucarate dehydratase YP_004555218.1 PFAM: Glycoside hydrolase, family 28; KEGG: pzu:PHZ_c2461 exo-poly-alpha-D-galacturonosidase YP_004555219.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: aex:Astex_3674 transcriptional regulator, LysR family YP_004555220.1 KEGG: aex:Astex_3671 hypothetical protein YP_004555221.1 KEGG: hba:Hbal_2506 D-galactonate transporter; TIGRFAM: D-galactonate transporter; PFAM: Major facilitator superfamily MFS-1 YP_004555222.1 KEGG: aex:Astex_3675 TonB-dependent receptor; TIGRFAM: Bacterial TonB-dependent receptor; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel YP_004555223.1 PFAM: Pectinesterase, catalytic; KEGG: aex:Astex_3420 pectinesterase YP_004555224.1 PFAM: Glycoside hydrolase, family 43; KEGG: ote:Oter_3109 glycoside hydrolase family protein YP_004555226.1 KEGG: clj:CLJU_c36540 hypothetical protein YP_004555227.1 KEGG: sjp:SJA_C1-09230 hypothetical protein YP_004555228.1 PFAM: Resolvase, N-terminal; Resolvase, helix-turn-helix region; KEGG: cak:Caul_1326 resolvase domain-containing protein YP_004555230.1 KEGG: sit:TM1040_3547 hypothetical protein YP_004555232.1 PFAM: Integrase, catalytic core, phage; KEGG: rpt:Rpal_1030 integrase family protein YP_004555233.1 KEGG: sjp:SJA_C1-09210 hypothetical protein YP_004555234.1 PFAM: Bacterial NAD-glutamate dehydrogenase; KEGG: sjp:SJA_C1-09190 NAD-specific glutamate dehydrogenase YP_004555235.1 PFAM: VacJ-like lipoprotein; KEGG: sjp:SJA_C1-09180 surface lipoprotein YP_004555236.1 PFAM: PepSY-associated TM helix; KEGG: sjp:SJA_C1-09170 hypothetical protein YP_004555237.1 PFAM: Uncharacterised conserved protein UCP014995; KEGG: sjp:SJA_C1-09160 hypothetical protein YP_004555238.1 PFAM: Nickel transport complex, NikM subunit, transmembrane; KEGG: sjp:SJA_C1-09150 hypothetical protein YP_004555239.1 KEGG: sjp:SJA_C1-09140 thiamine biosynthesis lipoprotein; manually curated; PFAM: ApbE-like lipoprotein YP_004555240.1 HAMAP: PKHD-type hydroxylase ybiX; PFAM: Oxoglutarate/iron-dependent oxygenase; KEGG: sjp:SJA_C1-10340 putative hydroxylase; SMART: Prolyl 4-hydroxylase, alpha subunit YP_004555241.1 KEGG: sjp:SJA_C1-10330 TonB-like protein; TIGRFAM: TonB, C-terminal; PFAM: Gram-negative bacterial tonB protein YP_004555242.1 PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; KEGG: sjp:SJA_C1-10320 iron complex outermembrane receptor protein YP_004555243.1 KEGG: sjp:SJA_C1-10310 arylsulfate sulfotransferase-like protein YP_004555244.1 TIGRFAM: Acetoacetyl-CoA reductase; KEGG: sjp:SJA_C1-10300 acetoacetyl-CoA reductase; PFAM: Short-chain dehydrogenase/reductase SDR YP_004555245.1 PFAM: Ferrochelatase; TIGRFAM: Ferrochelatase; HAMAP: Ferrochelatase; KEGG: sjp:SJA_C1-10290 protoheme ferro-lyase YP_004555246.1 KEGG: sjp:SJA_C1-10280 isoquinoline 1-oxidoreductase beta subunit YP_004555247.1 PFAM: CoA-binding; KEGG: sjp:SJA_C1-10270 putative CoA-binding protein YP_004555248.1 PFAM: ATPase-like, ParA/MinD; KEGG: sjp:SJA_C1-10260 ATP-binding protein involved in chromosome partitioning YP_004555249.1 TIGRFAM: HflK; PFAM: Band 7 protein; KEGG: sjp:SJA_C1-10250 membrane protease subunit HflK; SMART: Band 7 protein YP_004555250.1 KEGG: sjp:SJA_C1-10240 membrane protease subunit HflC; PFAM: Band 7 protein; SMART: Band 7 protein YP_004555251.1 SMART: PDZ/DHR/GLGF; TIGRFAM: Peptidase S1C, Do; KEGG: sjp:SJA_C1-10230 putative serine protease; PFAM: Peptidase S1/S6, chymotrypsin/Hap; PDZ/DHR/GLGF YP_004555252.1 PFAM: Protein of unknown function DUF853, nucleotide triphosphate hydrolase, putative; KEGG: sjp:SJA_C1-10220 putative ATPase YP_004555253.1 KEGG: sjp:SJA_C1-10210 hypothetical protein YP_004555254.1 KEGG: sjp:SJA_C1-10170 LuxR-family transcriptional regulator; PFAM: Transcription regulator LuxR, C-terminal; SMART: Transcription regulator LuxR, C-terminal YP_004555255.1 PFAM: Major facilitator superfamily MFS-1; KEGG: sjp:SJA_C1-10160 putative MFS permease YP_004555256.1 KEGG: sjp:SJA_C1-10150 TonB-dependent receptor-like protein; manually curated; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug YP_004555257.1 TIGRFAM: DNA-directed RNA polymerase, beta subunit, bacterial-type; HAMAP: DNA-directed RNA polymerase subunit beta; KEGG: sjp:SJA_C1-10140 DNA-directed RNA polymerase subunit beta; PFAM: DNA-directed RNA polymerase, subunit 2, domain 6; RNA polymerase Rpb2, domain 3; RNA polymerase, beta subunit, protrusion; RNA polymerase Rpb2, domain 2; DNA-directed RNA polymerase, beta subunit, external 1 domain; RNA polymerase Rpb2, domain 7 YP_004555258.1 SMART: RNA polymerase, N-terminal; TIGRFAM: DNA-directed RNA polymerase, subunit beta-prime; KEGG: sjp:SJA_C1-10130 DNA-directed RNA polymerase subunit beta'; HAMAP: DNA-directed RNA polymerase subunit beta'; PFAM: RNA polymerase Rpb1, domain 1; RNA polymerase, alpha subunit; RNA polymerase Rpb1, domain 3; RNA polymerase Rpb1, domain 4; RNA polymerase Rpb1, domain 5 YP_004555260.1 manually curated YP_004555261.1 manually curated; KEGG: sjp:SJA_C1-10040 hypothetical protein YP_004555262.1 KEGG: sjp:SJA_C1-10030 hypothetical protein YP_004555263.1 PFAM: Uncharacterised protein family UPF0150; CopG-like DNA-binding; KEGG: swi:Swit_0046 hypothetical protein YP_004555264.1 manually curated; KEGG: nar:Saro_2732 hypothetical protein YP_004555265.1 KEGG: nar:Saro_2731 XRE family transcriptional regulator; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3 YP_004555266.1 manually curated YP_004555267.1 manually curated YP_004555268.1 KEGG: sjp:SJA_C1-09990 hypothetical protein YP_004555269.1 KEGG: sjp:SJA_C1-09980 membrane protein involved in colicin uptake YP_004555270.1 KEGG: sjp:SJA_C1-09970 hypothetical protein YP_004555271.1 manually curated YP_004555272.1 manually curated; TIGRFAM: Excisionase/Xis, DNA-binding YP_004555275.1 KEGG: sjp:SJA_C1-09920 hypothetical protein YP_004555276.1 KEGG: sjp:SJA_C1-09920 hypothetical protein YP_004555279.1 manually curated YP_004555280.1 KEGG: sjp:SJA_C1-09890 hypothetical protein YP_004555282.1 PFAM: Integrase, catalytic core, phage; KEGG: sjp:SJA_C1-09870 putative integrase YP_004555283.1 PFAM: Filamentation induced by cAMP/death on curing, related; KEGG: mei:Msip34_2359 filamentation induced by cAMP protein Fic YP_004555284.1 KEGG: nar:Saro_3911 hypothetical protein YP_004555285.1 KEGG: sjp:SJA_C1-09810 Abi-like protein; manually curated; PFAM: Abortive infection bacteriophage resistance related YP_004555286.1 PFAM: Staphylococcal nuclease (SNase-like); KEGG: sjp:SJA_C1-09790 putative nuclease YP_004555287.1 KEGG: sjp:SJA_C1-09760 hypothetical protein YP_004555288.1 PFAM: FAD dependent oxidoreductase; KEGG: sjp:SJA_C1-09740 putative dehydrogenase YP_004555289.1 KEGG: sjp:SJA_C1-09730 hypothetical protein; manually curated; PFAM: PepSY-associated TM helix YP_004555290.1 PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: sjp:SJA_C1-09720 TonB-dependent receptor-like protein YP_004555291.1 KEGG: sjp:SJA_C1-09710 hypothetical protein YP_004555292.1 KEGG: sjp:SJA_C1-09700 MerR-family transcriptional regulator; PFAM: Transcription regulator MerR, DNA binding; HTH transcriptional regulator, MerR; SMART: HTH transcriptional regulator, MerR YP_004555293.1 KEGG: sjp:SJA_C1-09690 acyl-CoA dehydrogenase; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central region; Acyl-CoA dehydrogenase, N-terminal YP_004555294.1 KEGG: sjp:SJA_C1-32160 putative methyl-accepting chemotaxis protein; PFAM: Chemotaxis methyl-accepting receptor, signalling; SMART: Chemotaxis methyl-accepting receptor, signalling YP_004555295.1 PFAM: Protein of unknown function DUF6, transmembrane; KEGG: sjp:SJA_C1-32170 putative permease YP_004555296.1 PFAM: Protein of unknown function DUF559; KEGG: sjp:SJA_C1-32180 hypothetical protein YP_004555297.1 TIGRFAM: Fe-S type hydro-lyases tartrate/fumarate alpha region; Fe-S type hydro-lyases tartrate/fumarate beta region; KEGG: sjp:SJA_C1-32190 fumarate hydratase FumA/FumB; PFAM: Fe-S type hydro-lyases tartrate/fumarate beta region; Fe-S type hydro-lyases tartrate/fumarate alpha region YP_004555298.1 KEGG: kvu:EIO_1344 hypothetical protein YP_004555299.1 PFAM: Glutathione S-transferase, C-terminal; Glutathione S-transferase, N-terminal; KEGG: sjp:SJA_C1-32210 glutathione S-transferase YP_004555300.1 KEGG: sjp:SJA_C1-32220 ribonucleoside-diphosphate reductase alpha chain; TIGRFAM: Ribonucleoside-diphosphate reductase, alpha subunit; PFAM: Ribonucleotide reductase large subunit, C-terminal; Ribonucleotide reductase large subunit, N-terminal YP_004555301.1 PFAM: Protein of unknown function DUF559; KEGG: sal:Sala_1774 hypothetical protein YP_004555302.1 KEGG: sjp:SJA_C1-32240 ribonucleoside-diphosphate reductase beta chain; PFAM: Ribonucleotide reductase YP_004555303.1 KEGG: dsh:Dshi_0810 hypothetical protein YP_004555304.1 KEGG: sal:Sala_1777 hypothetical protein YP_004555305.1 PFAM: Rickettsia 17kDa surface antigen; KEGG: sjp:SJA_C1-32270 putative surface antigen YP_004555307.1 KEGG: sjp:SJA_C1-32280 putative nuclease; PFAM: Staphylococcal nuclease (SNase-like); SMART: Staphylococcal nuclease (SNase-like) YP_004555308.1 PFAM: Globin, truncated bacterial-like; KEGG: sjp:SJA_C1-32290 putative globin YP_004555309.1 KEGG: sjp:SJA_C2-05780 hypothetical protein YP_004555310.1 PFAM: Glycoside hydrolase, family 16; KEGG: sjp:SJA_C2-05870 putative glycoside hydrolase YP_004555311.1 TIGRFAM: Deoxyguanosinetriphosphate triphosphohydrolase; PFAM: Metal-dependent phosphohydrolase, HD region, subdomain; KEGG: mpo:Mpop_4057 deoxyguanosinetriphosphate triphosphohydrolase-like protein; SMART: Metal-dependent phosphohydrolase, HD region YP_004555312.1 PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: sjp:SJA_C2-05880 chromosome partitioning protein ParA YP_004555313.1 TIGRFAM: ParB-like partition protein; PFAM: ParB-like nuclease; KEGG: sjp:SJA_C2-05890 ParB-like protein; SMART: ParB-like nuclease YP_004555314.1 PFAM: Replication initiator protein A; KEGG: sjp:SJA_C2-00010 plasmid replication initiator protein YP_004555315.1 KEGG: sjp:SJA_C2-00020 hypothetical protein YP_004555317.1 PFAM: ROSMUCR transcriptional regulator; KEGG: sjp:SJA_C2-00060 AlgP-family transcriptional regulator YP_004555318.1 KEGG: sjp:SJA_C2-00090 histone-like DNA-binding protein; PFAM: Histone-like bacterial DNA-binding protein; SMART: Histone-like bacterial DNA-binding protein YP_004555319.1 PFAM: Bacterial surface antigen (D15); Polypeptide-transport-associated, ShlB-type; KEGG: sjp:SJA_C2-00110 putative hemolysin activation/secretion protein YP_004555320.1 KEGG: sjp:SJA_C2-00120 putative oxygenase; PFAM: Oxoglutarate/iron-dependent oxygenase; SMART: Prolyl 4-hydroxylase, alpha subunit YP_004555321.1 PFAM: Collagen triple helix repeat; KEGG: swi:Swit_3498 triple helix repeat-containing collagen YP_004555322.1 TIGRFAM: ParB-like partition protein; PFAM: ParB-like nuclease; KEGG: sjp:SJA_C2-00170 ParB-like protein; SMART: ParB-like nuclease YP_004555324.1 PFAM: TadE-like; KEGG: sjp:SJA_C2-00260 TadE-like protein YP_004555325.1 PFAM: Flp/Fap pilin component; KEGG: sjp:SJA_C2-00270 putative pilus assembly protein YP_004555326.1 PFAM: Protein of unknown function DUF2134, membrane; KEGG: sjp:SJA_C2-00280 hypothetical protein YP_004555327.1 KEGG: sjp:SJA_C2-00300 Flp pilus assembly protein TadD YP_004555328.1 PFAM: Type II secretion system F domain; KEGG: sjp:SJA_C2-00310 Flp pilus assembly protein TadC YP_004555329.1 PFAM: Type II secretion system F domain; KEGG: sjp:SJA_C2-00320 Flp pilus assembly protein TadB YP_004555330.1 PFAM: Type II secretion system protein E; KEGG: sjp:SJA_C2-00330 pilus assembly protein CpaF YP_004555331.1 KEGG: sjp:SJA_C2-00340 pilus assembly protein CpaE YP_004555332.1 PFAM: Type II/III secretion system; KEGG: sjp:SJA_C2-00350 Flp pilus assembly protein secretin CpaC YP_004555333.1 KEGG: sjp:SJA_C2-00360 Flp pilus assembly protein CpaB; TIGRFAM: Pilus assembly, Flp-type CpaB; PFAM: SAF domain YP_004555334.1 TIGRFAM: 4-hydroxyphenylpyruvate dioxygenase; KEGG: sjp:SJA_C2-00370 putative 4-hydroxyphenylpyruvate dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase YP_004555335.1 TIGRFAM: Phenylalanine-4-hydroxylase, monomeric form; KEGG: sjp:SJA_C2-00380 putative phenylalanine-4-hydroxylase; PFAM: Aromatic amino acid hydroxylase, C-terminal YP_004555336.1 KEGG: swi:Swit_1995 cytochrome P450; PFAM: Cytochrome P450 YP_004555337.1 KEGG: bpt:Bpet4197 GntR family transcriptional regulator; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: HTH transcriptional regulator, GntR YP_004555338.1 KEGG: swi:Swit_2030 hypothetical protein YP_004555339.1 KEGG: swi:Swit_2029 hypothetical protein YP_004555340.1 PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: swi:Swit_1985 TonB-dependent receptor, plug YP_004555341.1 KEGG: swi:Swit_2022 indolepyruvate ferredoxin oxidoreductase; PFAM: Pyruvate/ketoisovalerate oxidoreductase YP_004555342.1 KEGG: swi:Swit_0822 acyl-CoA dehydrogenase domain-containing protein; PFAM: Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, central region; Acyl-CoA oxidase/dehydrogenase, type 1 YP_004555344.1 PFAM: Major facilitator superfamily MFS-1; KEGG: swi:Swit_2014 major facilitator transporter YP_004555345.1 KEGG: swi:Swit_1974 L-carnitine dehydratase/bile acid-inducible protein F; PFAM: CoA-transferase family III YP_004555346.1 PFAM: Nitroreductase-like; KEGG: swi:Swit_1973 nitroreductase YP_004555347.1 PFAM: Protein of unknown function DUF35; KEGG: swi:Swit_1972 nucleic-acid-binding protein containing a Zn-ribbon-like protein YP_004555348.1 KEGG: swi:Swit_1971 acetyl-CoA acetyltransferase-like protein YP_004555349.1 KEGG: swi:Swit_1970 L-carnitine dehydratase/bile acid-inducible protein F; PFAM: CoA-transferase family III YP_004555350.1 PFAM: Amidohydrolase 2; KEGG: swi:Swit_1969 amidohydrolase 2 YP_004555351.1 PFAM: HTH transcriptional regulator, LysR; LysR, substrate-binding; KEGG: swi:Swit_1962 LysR family transcriptional regulator YP_004555352.1 PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: swi:Swit_2028 short-chain dehydrogenase/reductase SDR YP_004555353.1 KEGG: sal:Sala_0885 hypothetical protein YP_004555354.1 PFAM: Protein of unknown function DUF894, DitE; KEGG: swi:Swit_2025 protein of unknown function DUF894, DitE YP_004555355.1 manually curated; PFAM: Transcription regulator LuxR, C-terminal; KEGG: swi:Swit_1997 regulatory protein, LuxR; SMART: Transcription regulator LuxR, C-terminal YP_004555356.1 KEGG: swi:Swit_1998 acyl-CoA dehydrogenase domain-containing protein; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, central region YP_004555357.1 PFAM: Crotonase, core; KEGG: swi:Swit_2032 short chain enoyl-CoA hydratase YP_004555358.1 KEGG: reh:H16_B1749 acyl-CoA transferase/carnitine dehydratase; PFAM: CoA-transferase family III YP_004555359.1 KEGG: swi:Swit_2000 acetyl-CoA acetyltransferase; TIGRFAM: Thiolase YP_004555360.1 KEGG: swi:Swit_2001 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR YP_004555361.1 KEGG: swi:Swit_1975 AraC family transcriptional regulator; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain YP_004555362.1 PFAM: Flavin reductase-like, FMN-binding; KEGG: azl:AZL_a11160 flavin reductase domain protein YP_004555363.1 PFAM: Crotonase, core; KEGG: swi:Swit_1999 enoyl-CoA hydratase/isomerase YP_004555364.1 KEGG: sro:Sros_8290 acetyl-coenzyme A synthetase YP_004555365.1 KEGG: swi:Swit_1979 aldehyde dehydrogenase; PFAM: Aldehyde dehydrogenase YP_004555366.1 KEGG: swi:Swit_1978 hypothetical protein YP_004555367.1 KEGG: rsl:RPSI07_mp1491 hypothetical protein YP_004555368.1 PFAM: Crotonase, core; KEGG: swi:Swit_1977 enoyl-CoA hydratase YP_004555369.1 PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: swi:Swit_2019 short-chain dehydrogenase/reductase SDR YP_004555370.1 PFAM: Acyl-CoA oxidase/dehydrogenase, central region; Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, type 1; KEGG: swi:Swit_1993 acyl-CoA dehydrogenase domain-containing protein YP_004555371.1 PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA dehydrogenase, N-terminal; KEGG: swi:Swit_1992 acyl-CoA dehydrogenase domain-containing protein YP_004555372.1 PFAM: Crotonase, core; KEGG: swi:Swit_1991 enoyl-CoA hydratase/isomerase YP_004555373.1 TIGRFAM: Glyoxalase I; KEGG: swi:Swit_1990 lactoylglutathione lyase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase YP_004555374.1 KEGG: swi:Swit_1989 FAD linked oxidase domain-containing protein; PFAM: FAD-linked oxidase, C-terminal; FAD linked oxidase, N-terminal YP_004555375.1 KEGG: mes:Meso_2493 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR YP_004555376.1 PFAM: Rieske [2Fe-2S] iron-sulphur domain; KEGG: swi:Swit_1988 Rieske (2Fe-2S) domain-containing protein YP_004555377.1 KEGG: swi:Swit_2009 ethyl tert-butyl ether degradation EthD; TIGRFAM: Ethyl tert-butyl ether degradation EthD; PFAM: Ethyl tert-butyl ether degradation EthD YP_004555378.1 KEGG: swi:Swit_1984 hypothetical protein YP_004555379.1 KEGG: pzu:PHZ_c1832 putative monooxygenase; PFAM: FAD dependent oxidoreductase YP_004555380.1 KEGG: bxe:Bxe_C0619 putative short-chain dehydrogenase/reductase; PFAM: Short-chain dehydrogenase/reductase SDR YP_004555381.1 SMART: Pyrrolo-quinoline quinone beta-propeller repeat; TIGRFAM: PQQ-dependent membrane bound dehydrogenase, glucose/quinate/shikimate related; KEGG: swi:Swit_2024 quinoprotein glucose dehydrogenase; PFAM: PQQ-dependent enzyme, N-terminal; Pyrrolo-quinoline quinone repeat; PQQ-dependent enzyme, C-terminal YP_004555382.1 KEGG: sse:Ssed_2584 ketoreductase; PFAM: Short-chain dehydrogenase/reductase SDR YP_004555383.1 PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: nfa:nfa33770 putative short chain dehydrogenase YP_004555384.1 KEGG: ccs:CCNA_02392 cytosolic protein YP_004555385.1 KEGG: cak:Caul_1910 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR YP_004555387.1 PFAM: Aminoglycoside phosphotransferase; KEGG: rop:ROP_24750 hypothetical protein YP_004555388.1 KEGG: mav:MAV_5057 hypothetical protein YP_004555389.1 KEGG: cse:Cseg_0090 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR YP_004555390.1 KEGG: mag:amb3305 NADH:flavin oxidoreductase; PFAM: NADH:flavin oxidoreductase/NADH oxidase, N-terminal YP_004555391.1 PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: cak:Caul_0516 TonB-dependent receptor YP_004555392.1 SMART: Pyrrolo-quinoline quinone beta-propeller repeat; TIGRFAM: PQQ-dependent membrane bound dehydrogenase, glucose/quinate/shikimate related; KEGG: kpe:KPK_2398 quinate dehydrogenase (pyrroloquinoline-quinone); PFAM: PQQ-dependent enzyme, N-terminal; Pyrrolo-quinoline quinone repeat; PQQ-dependent enzyme, C-terminal YP_004555393.1 KEGG: swi:Swit_5015 IS4 family transposase YP_004555394.1 PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: swi:Swit_1656 TonB-dependent receptor YP_004555395.1 manually curated; KEGG: cak:Caul_1870 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring); PFAM: Dehydrogenase, E1 component YP_004555396.1 KEGG: cak:Caul_1871 transketolase central region; PFAM: Transketolase-like, pyrimidine-binding domain; Transketolase, C-terminal YP_004555397.1 KEGG: swi:Swit_0780 branched-chain alpha-keto acid dehydrogenase E2 component; PFAM: 2-oxoacid dehydrogenase acyltransferase, catalytic domain; Biotin/lipoyl attachment; E3 binding YP_004555398.1 TIGRFAM: Dihydrolipoamide dehydrogenase; KEGG: cak:Caul_1873 dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation YP_004555399.1 TIGRFAM: 3-isopropylmalate dehydratase, small subunit region; HAMAP: 3-isopropylmalate dehydratase, small subunit region; KEGG: swi:Swit_4709 isopropylmalate isomerase small subunit; PFAM: Aconitase A/isopropylmalate dehydratase small subunit, swivel YP_004555400.1 TIGRFAM: 3-isopropylmalate dehydratase, large subunit region; HAMAP: 3-isopropylmalate dehydratase, large subunit region; KEGG: swi:Swit_4707 isopropylmalate isomerase large subunit; PFAM: Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha YP_004555401.1 PFAM: Cytochrome P450; KEGG: bja:blr1048 cytochrome P450 YP_004555402.1 KEGG: xcv:XCV0912 GntR family transcriptional regulator; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: HTH transcriptional regulator, GntR YP_004555403.1 KEGG: amd:AMED_6096 hypothetical protein YP_004555405.1 PFAM: Integrase, catalytic core; KEGG: met:M446_6913 integrase catalytic region YP_004555406.1 KEGG: axy:AXYL_00529 short chain dehydrogenase family protein 8; PFAM: Short-chain dehydrogenase/reductase SDR YP_004555407.1 KEGG: reu:Reut_A2185 propionyl-CoA synthetase; PFAM: AMP-dependent synthetase/ligase YP_004555408.1 KEGG: pla:Plav_1660 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase YP_004555409.1 KEGG: pbr:PB2503_01202 hypothetical protein YP_004555410.1 KEGG: homogentisate 1,2-dioxygenase; PFAM: Homogentisate 1,2-dioxygenase YP_004555411.1 PFAM: Isocitrate/isopropylmalate dehydrogenase; TIGRFAM: Isopropylmalate dehydrogenase; HAMAP: Isopropylmalate dehydrogenase; KEGG: ccs:CCNA_00193 3-isopropylmalate dehydrogenase YP_004555413.1 KEGG: rec:RHECIAT_CH0001164 hypothetical protein YP_004555414.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase YP_004555415.1 KEGG: eba:p2D4 hypothetical protein YP_004555416.1 SMART: Pyrrolo-quinoline quinone beta-propeller repeat; TIGRFAM: PQQ-dependent membrane bound dehydrogenase, glucose/quinate/shikimate related; KEGG: swi:Swit_2024 quinoprotein glucose dehydrogenase; PFAM: PQQ-dependent enzyme, N-terminal; Pyrrolo-quinoline quinone repeat; PQQ-dependent enzyme, C-terminal YP_004555417.1 KEGG: gme:Gmet_2794 IS111A/IS1328/IS1533/IS116/IS110/IS902 transposase YP_004555418.1 PFAM: Major facilitator superfamily MFS-1; KEGG: cak:Caul_3250 major facilitator transporter YP_004555419.1 KEGG: pla:Plav_1020 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR YP_004555420.1 KEGG: vei:Veis_4652 hypothetical protein YP_004555421.1 PFAM: Crotonase, core; KEGG: fri:FraEuI1c_2831 enoyl-CoA hydratase/isomerase YP_004555422.1 PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: nar:Saro_2469 TonB-dependent receptor YP_004555423.1 KEGG: bxe:Bxe_B1094 hypothetical protein YP_004555424.1 KEGG: swi:Swit_3355 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR YP_004555425.1 PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: rer:RER_02320 TetR family transcriptional regulator YP_004555426.1 PFAM: Sulfatase; KEGG: ava:Ava_0111 sulfatase YP_004555427.1 KEGG: met:M446_1197 hypothetical protein; manually curated; PFAM: Sulphatase-modifying factor YP_004555428.1 PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: swi:Swit_1985 TonB-dependent receptor, plug YP_004555429.1 KEGG: oan:Oant_4628 transposase IS116/IS110/IS902 family protein YP_004555430.1 PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; KEGG: nar:Saro_3562 TonB-dependent receptor, plug YP_004555432.1 PFAM: Sulfatase; KEGG: bbt:BBta_3535 putative arylsulfatase YP_004555433.1 PFAM: Sulfatase; KEGG: pap:PSPA7_2626 sulfatase YP_004555434.1 PFAM: Sulphatase-modifying factor; KEGG: nar:Saro_2474 hypothetical protein YP_004555435.1 KEGG: rmr:Rmar_1738 glucose-methanol-choline oxidoreductase; PFAM: FAD dependent oxidoreductase; Glucose-methanol-choline oxidoreductase, N-terminal YP_004555436.1 KEGG: rmr:Rmar_1736 hypothetical protein YP_004555437.1 KEGG: swi:Swit_1637 LacI family transcription regulator; PFAM: Periplasmic binding protein/LacI transcriptional regulator; HTH transcriptional regulator, LacI; SMART: HTH transcriptional regulator, LacI YP_004555438.1 PFAM: Xylose isomerase, TIM barrel domain; KEGG: nar:Saro_3167 twin-arginine translocation pathway signal YP_004555439.1 PFAM: Xylose isomerase, TIM barrel domain; AP endonuclease, family 2, C-terminal; KEGG: sml:Smlt1196 putative xylose isomerase/endonuclease family protein YP_004555440.1 PFAM: Oxidoreductase, N-terminal; Oxidoreductase, C-terminal; KEGG: cak:Caul_4610 oxidoreductase domain-containing protein YP_004555441.1 PFAM: Nucleoside:H+ symporter; KEGG: nar:Saro_3166 nucleoside:H+ symporter YP_004555442.1 KEGG: tau:Tola_3107 carboxylesterase; PFAM: Carboxylesterase, type B YP_004555443.1 KEGG: swi:Swit_0783 AsnC family transcriptional regulator; PFAM: Transcription regulator, AsnC-type, C-terminal; SMART: Transcription regulator, AsnC-type YP_004555445.1 KEGG: pla:Plav_1648 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR YP_004555446.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region; KEGG: rha:RHA1_ro05696 dimethylaniline monooxygenase (N-oxide-forming) YP_004555447.1 PFAM: Limonene-1,2-epoxide hydrolase; KEGG: bge:BC1002_6572 limonene-12-epoxide hydrolase YP_004555448.1 KEGG: tnp:Tnap_0941 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR YP_004555449.1 PFAM: Alpha/beta hydrolase fold-1; KEGG: mva:Mvan_4238 alpha/beta hydrolase fold YP_004555450.1 KEGG: ara:Arad_12317 short-chain alcohol dehydrogenase; PFAM: Short-chain dehydrogenase/reductase SDR YP_004555451.1 KEGG: swi:Swit_2257 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR YP_004555452.1 PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: swi:Swit_1539 TonB-dependent receptor YP_004555453.1 KEGG: fal:FRAAL2506 putative short-chain dehydrogenase; putative signal peptide; PFAM: Short-chain dehydrogenase/reductase SDR YP_004555454.1 PFAM: Xylose isomerase, TIM barrel domain; KEGG: swi:Swit_0284 xylose isomerase domain-containing protein YP_004555455.1 KEGG: swi:Swit_4242 glucose-methanol-choline oxidoreductase; PFAM: Glucose-methanol-choline oxidoreductase, N-terminal; Glucose-methanol-choline oxidoreductase, C-terminal YP_004555456.1 KEGG: shi:Shel_01970 acetolactate synthase, large subunit; PFAM: Thiamine pyrophosphate enzyme, central region; Thiamine pyrophosphate enzyme, N-terminal TPP binding region; Thiamine pyrophosphate enzyme, C-terminal TPP-binding YP_004555457.1 KEGG: sal:Sala_1768 MarR family transcriptional regulator; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR YP_004555458.1 KEGG: hoh:Hoch_4741 cytochrome P450; PFAM: Cytochrome P450 YP_004555459.1 KEGG: azl:AZL_a09180 gentisate 1,2-dioxygenase; TIGRFAM: Gentisate 1,2-dioxygenase; PFAM: Cupin 2, conserved barrel YP_004555460.1 PFAM: Fumarylacetoacetase, C-terminal-like; KEGG: hba:Hbal_2639 fumarylacetoacetate (FAA) hydrolase YP_004555461.1 TIGRFAM: Maleylacetoacetate isomerase; KEGG: nar:Saro_3441 maleylacetoacetate isomerase; PFAM: Glutathione S-transferase, N-terminal YP_004555462.1 PFAM: UbiC transcription regulator-associated; KEGG: swi:Swit_4635 GntR family transcriptional regulator YP_004555463.1 PFAM: Protein of unknown function DUF1326; KEGG: sjp:SJA_C2-00440 hypothetical protein YP_004555464.1 PFAM: Protein of unknown function DUF2182, transmembrane, metal-binding; KEGG: sjp:SJA_C2-00450 hypothetical protein YP_004555465.1 KEGG: dia:Dtpsy_0223 transcriptional regulator, GntR family; PFAM: HTH transcriptional regulator, GntR; GntR, C-terminal; SMART: HTH transcriptional regulator, GntR YP_004555466.1 KEGG: nar:Saro_0875 short chain dehydrogenase; PFAM: Short-chain dehydrogenase/reductase SDR YP_004555467.1 KEGG: rpx:Rpdx1_3288 acyl-CoA dehydrogenase domain-containing protein; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central region; Acyl-CoA dehydrogenase, N-terminal YP_004555468.1 KEGG: sjp:SJA_C2-00460 NarL-family response regulator; PFAM: Signal transduction response regulator, receiver region; Transcription regulator LuxR, C-terminal; SMART: Signal transduction response regulator, receiver region; Transcription regulator LuxR, C-terminal YP_004555469.1 TIGRFAM: PAS; PFAM: ATP-binding region, ATPase-like; PAS fold; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; KEGG: sjp:SJA_C2-00470 signal transduction histidine kinase; SMART: ATP-binding region, ATPase-like; PAS; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region YP_004555470.1 PFAM: UspA; KEGG: sjp:SJA_C2-00480 universal stress protein UspA YP_004555471.1 KEGG: sjp:SJA_C2-00490 hypothetical protein YP_004555472.1 KEGG: nar:Saro_1277 elongation factor G; TIGRFAM: Small GTP-binding protein; PFAM: Translation elongation factor EFG/EF2, domain IV; Protein synthesis factor, GTP-binding; Translation elongation factor EFG/EF2, C-terminal YP_004555473.1 KEGG: ebi:EbC_43450 conserved uncharacterized protein YP_004555474.1 PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: sjp:SJA_C2-00500 TonB-dependent receptor-like protein YP_004555475.1 PFAM: PepSY-associated TM helix; KEGG: sjp:SJA_C2-00510 iron-uptake factor YP_004555476.1 TIGRFAM: Methylmalonate-semialdehyde dehydrogenase; KEGG: sjp:SJA_C2-00540 methylmalonate-semialdehyde dehydrogenase; PFAM: Aldehyde dehydrogenase YP_004555477.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: sjp:SJA_C2-00550 LysR-family transcriptional regulator YP_004555478.1 PFAM: Methyltransferase type 12; KEGG: sjp:SJA_C2-00560 putative methyltransferase YP_004555479.1 PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; KEGG: aex:Astex_3350 TonB-dependent receptor plug YP_004555481.1 PFAM: Inositol monophosphatase; KEGG: sjp:SJA_C2-00570 putative phosphatase YP_004555482.1 PFAM: Adenylylsulphate kinase, C-terminal; Protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, domain 2; TIGRFAM: Sulphate adenylyltransferase, large subunit; Adenylylsulphate kinase, C-terminal; HAMAP: Sulfate adenylyltransferase subunit 1; KEGG: sjp:SJA_C2-00580 adenylylsulfate kinase YP_004555483.1 PFAM: Phosphoadenosine phosphosulphate reductase; TIGRFAM: Sulphate adenylyltransferase, small subunit; HAMAP: Sulfate adenylyltransferase subunit 2; KEGG: sjp:SJA_C2-00590 sulfate adenylyltransferase subunit 2 YP_004555484.1 SMART: Transcription regulator LuxR, C-terminal; KEGG: sjp:SJA_C2-00600 LuxR-family transcriptional regulator YP_004555485.1 KEGG: sjp:SJA_C2-00610 hypothetical protein YP_004555486.1 SMART: Elongator protein 3/MiaB/NifB; TIGRFAM: Oxygen-independent coproporphyrinogen III oxidase HemN; KEGG: sjp:SJA_C2-00620 oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM; HemN, C-terminal YP_004555487.1 KEGG: ccs:CCNA_00993 long-chain-fatty-acid--CoA ligase; PFAM: AMP-dependent synthetase/ligase YP_004555488.1 KEGG: sjp:SJA_C1-03950 acetyl-CoA acetyltransferase; TIGRFAM: Thiolase YP_004555489.1 PFAM: Aldehyde dehydrogenase; KEGG: avi:Avi_7686 NAD-dependent succinate aldehyde dehydrogenase YP_004555490.1 PFAM: Crotonase, core; KEGG: bra:BRADO2915 enoyl-CoA hydratase YP_004555491.1 KEGG: reu:Reut_A3281 short chain dehydrogenase; PFAM: Short-chain dehydrogenase/reductase SDR YP_004555492.1 KEGG: sjp:SJA_C1-03820 3-hydroxyacyl-CoA dehydrogenase; PFAM: 3-hydroxyacyl-CoA dehydrogenase, NAD binding; Crotonase, core; 3-hydroxyacyl-CoA dehydrogenase, C-terminal YP_004555493.1 KEGG: bbt:BBta_7865 cytochrome P450-terp; PFAM: Cytochrome P450 YP_004555494.1 PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: rpc:RPC_2195 TetR family transcriptional regulator YP_004555495.1 KEGG: pzu:PHZ_c0388 long-chain acyl-CoA dehydrogenase; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, central region YP_004555496.1 KEGG: sjp:SJA_C2-01230 hypothetical protein YP_004555497.1 KEGG: sjp:SJA_C2-01250 signal transduction histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; HAMP linker domain; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; HAMP linker domain YP_004555498.1 KEGG: azc:AZC_2885 outer membrane autotransporter barrel protein; TIGRFAM: Outer membrane autotransporter barrel; PFAM: Autotransporter beta-domain YP_004555499.1 KEGG: sjp:SJA_C1-09610 putative amidohydrolase; TIGRFAM: Peptidase M20D, amidohydrolase; PFAM: Peptidase M20, dimerisation YP_004555500.1 PFAM: Outer membrane protein, OmpW; KEGG: sjp:SJA_C2-00650 outer membrane protein W YP_004555501.1 KEGG: sjp:SJA_C2-00660 Crp/Fnr-family transcriptional regulator; PFAM: Cyclic nucleotide-binding; HTH transcriptional regulator, Crp; SMART: Cyclic nucleotide-binding; HTH transcriptional regulator, Crp YP_004555502.1 TIGRFAM: Cytochrome c oxidase cbb3-type, subunit I; KEGG: sjp:SJA_C2-00670 cb-type cytochrome c oxidase subunit I; PFAM: Cytochrome c oxidase, subunit I YP_004555503.1 KEGG: sjp:SJA_C2-00680 cb-type cytochrome c oxidase subunit II; TIGRFAM: Cytochrome C oxidase, monohaem subunit/FixO; PFAM: Cytochrome C oxidase, monohaem subunit/FixO YP_004555504.1 KEGG: sjp:SJA_C2-00690 Cbb3-type cytochrome oxidase subunit 3 YP_004555505.1 KEGG: sjp:SJA_C2-00700 cb-type cytochrome c oxidase subunit III; TIGRFAM: Cytochrome c oxidase cbb3-type, subunit III; PFAM: Cytochrome c, class I YP_004555506.1 KEGG: sjp:SJA_C2-00710 nitrogen fixation protein FixG; TIGRFAM: Cytochrome c oxidase cbb3 type, accessory protein FixG; PFAM: 4Fe-4S ferredoxin, iron-sulphur binding, subgroup YP_004555507.1 PFAM: FixH; KEGG: sjp:SJA_C2-00720 nitrogen fixation protein FixH YP_004555508.1 TIGRFAM: ATPase, P-type, heavy metal translocating; ATPase, P type, cation/copper-transporter; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; KEGG: sjp:SJA_C2-00730 nitrogen fixation protein FixI; PFAM: ATPase, P-type, ATPase-associated region; Heavy metal transport/detoxification protein; Haloacid dehalogenase-like hydrolase YP_004555509.1 KEGG: sjp:SJA_C2-00740 nitrogen fixation protein FixS; TIGRFAM: Cytochrome oxidase maturation protein cbb3-type; PFAM: Cytochrome oxidase maturation protein cbb3-type YP_004555510.1 PFAM: Lipase, GDSL; KEGG: sjp:SJA_C2-00760 lysophospholipase YP_004555511.1 PFAM: ABC transporter-like; KEGG: sjp:SJA_C2-00770 ABC-type transport system ATPase component; SMART: ATPase, AAA+ type, core YP_004555512.1 PFAM: Protein of unknown function DUF214, permase predicted; KEGG: sjp:SJA_C2-00780 ABC-type transport system permease component YP_004555513.1 KEGG: sjp:SJA_C2-02530 hypothetical protein YP_004555514.1 KEGG: nca:Noca_1748 response regulator receiver; PFAM: Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region YP_004555515.1 KEGG: mlo:mlr6692 O-linked GlcNAc transferase YP_004555516.1 PFAM: PBS lyase HEAT-like repeat; KEGG: ttr:Tter_2190 PBS lyase heat domain protein repeat-containing protein YP_004555517.1 PFAM: Glycosyl transferase, family 2; KEGG: glycosyl transferase family 2 YP_004555519.1 TIGRFAM: PAS; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; PAS fold-3; GAF; Signal transduction response regulator, receiver region; KEGG: mgm:Mmc1_3189 PAS/PAC sensor hybrid histidine kinase; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; PAC motif; GAF; PAS; Signal transduction response regulator, receiver region YP_004555520.1 PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: sjp:SJA_C2-02550 TonB-dependent receptor-like protein YP_004555521.1 PFAM: Transposase IS3/IS911; Integrase, catalytic core; KEGG: rde:RD1_3380 integrase catalytic subunit YP_004555522.1 PFAM: Cytochrome c oxidase, subunit I; KEGG: rlt:Rleg2_5243 cytochrome c oxidase subunit I YP_004555523.1 KEGG: rlt:Rleg2_5242 cytochrome c oxidase subunit III YP_004555524.1 PFAM: Cytochrome c, class I; KEGG: sus:Acid_6904 cytochrome c, class I YP_004555525.1 TIGRFAM: Cyanophycin synthetase; KEGG: cyanophycin synthetase; PFAM: Mur ligase, central; ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type; Mur ligase, C-terminal YP_004555526.1 KEGG: asparaginase; PFAM: Peptidase T2, asparaginase 2 YP_004555527.1 TIGRFAM: Cyanophycinase; KEGG: cyanophycinase; PFAM: Peptidase S51, dipeptidase E YP_004555528.1 PFAM: Methyltransferase small; KEGG: pau:PA14_36390 hypothetical protein YP_004555529.1 KEGG: sjp:SJA_C2-00230 dTDP-4-dehydrorhamnose reductase; PFAM: dTDP-4-dehydrorhamnose reductase YP_004555530.1 TIGRFAM: UDP-galactopyranose mutase; KEGG: sjp:SJA_C2-00240 UDP-galactopyranose mutase; PFAM: UDP-galactopyranose mutase, C-terminal; FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_004555531.1 KEGG: sjp:SJA_C1-10910 hypothetical protein YP_004555532.1 KEGG: sjp:SJA_C1-10920 putative outer membrane protein YP_004555533.1 KEGG: avn:Avin_21900 NADH:flavin oxidoreductase/NADH oxidase; PFAM: NADH:flavin oxidoreductase/NADH oxidase, N-terminal YP_004555534.1 PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: bxe:Bxe_A4300 TetR family transcriptional regulator YP_004555535.1 KEGG: cwo:Cwoe_0435 aromatic-ring-hydroxylating dioxygenase, alpha subunit-like protein; PFAM: Aromatic-ring-hydroxylating dioxygenase, alpha subunit, C-terminal; Rieske [2Fe-2S] iron-sulphur domain YP_004555536.1 KEGG: dar:Daro_3245 3-phenylpropionate dioxygenase subunit beta; PFAM: Aromatic-ring-hydroxylating dioxygenase, beta subunit YP_004555537.1 KEGG: cwo:Cwoe_0437 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR YP_004555538.1 KEGG: cse:Cseg_3072 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase YP_004555539.1 KEGG: dar:Daro_3250 alpha/beta hydrolase fold; PFAM: Alpha/beta hydrolase fold-1 YP_004555540.1 KEGG: tpr:Tpau_3843 biphenyl-2,3-diol 1,2-dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase YP_004555541.1 KEGG: avn:Avin_42160 2-nitropropane dioxygenase-like dioxygenase; manually curated; PFAM: 2-nitropropane dioxygenase, NPD YP_004555542.1 manually curated; KEGG: azl:AZL_a06860 carboxylesterase type B; PFAM: Carboxylesterase, type B YP_004555543.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: vap:Vapar_5661 transcriptional regulator, LysR family YP_004555544.1 KEGG: nar:Saro_1946 dihydrolipoamide acetyltransferase, long form; PFAM: 2-oxoacid dehydrogenase acyltransferase, catalytic domain; Biotin/lipoyl attachment; E3 binding YP_004555545.1 KEGG: swi:Swit_1166 transketolase, central region; PFAM: Transketolase-like, pyrimidine-binding domain YP_004555546.1 KEGG: swi:Swit_1165 AsnC family transcriptional regulator; PFAM: Transcription regulator, AsnC-type, C-terminal; SMART: Transcription regulator, AsnC-type YP_004555547.1 PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: rlt:Rleg2_0110 transcriptional regulator, TetR family YP_004555548.1 KEGG: pla:Plav_2497 alpha/beta hydrolase fold; PFAM: Alpha/beta hydrolase fold-1 YP_004555549.1 KEGG: bid:Bind_2167 glutathione S-transferase domain-containing protein; manually curated; PFAM: Glutathione S-transferase, C-terminal; Glutathione S-transferase, N-terminal YP_004555550.1 KEGG: cak:Caul_0587 dehydrogenase E1 component; PFAM: Dehydrogenase, E1 component; Transketolase-like, pyrimidine-binding domain; Transketolase, C-terminal YP_004555551.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: xau:Xaut_1570 glyoxalase/bleomycin resistance protein/dioxygenase YP_004555552.1 KEGG: nar:Saro_0129 L-sorbosone dehydrogenase YP_004555553.1 PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: sjp:SJA_C2-03610 TonB-dependent receptor-like protein YP_004555554.1 PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: sjp:SJA_C2-01140 TonB-dependent receptor-like protein YP_004555556.1 PFAM: HTH transcriptional regulator, LysR; LysR, substrate-binding; KEGG: sjp:SJA_C2-01120 LysR-family transcriptional regulator YP_004555557.1 KEGG: reu:Reut_B4797 ferredoxin:oxidoreductase FAD/NAD(P)-binding:oxidoreductase FAD-binding region; PFAM: Ferredoxin; Oxidoreductase FAD/NAD(P)-binding; Oxidoreductase FAD-binding region YP_004555558.1 KEGG: scl:sce0066 pentachlorophenol monooxygenase; PFAM: Monooxygenase, FAD-binding YP_004555559.1 KEGG: sjp:SJA_C2-05180 hypothetical protein YP_004555560.1 KEGG: sjp:SJA_C2-05170 putative dehydrogenase/oxidoreductase; PFAM: Alcohol dehydrogenase, zinc-binding YP_004555561.1 PFAM: Helix-turn-helix, HxlR type; KEGG: sjp:SJA_C2-05160 HxlR-family transcriptional regulator YP_004555562.1 PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; KEGG: sjp:SJA_C2-05120 TonB-dependent receptor-like protein YP_004555563.1 KEGG: sjp:SJA_C2-05110 SDR-family protein; PFAM: Short-chain dehydrogenase/reductase SDR YP_004555564.1 KEGG: sjp:SJA_C2-05100 putative alcohol dehydrogenase; PFAM: Alcohol dehydrogenase GroES-like; Alcohol dehydrogenase, zinc-binding YP_004555565.1 KEGG: sjp:SJA_C2-05090 putative flavin-containing monooxygenase; PFAM: FAD dependent oxidoreductase YP_004555566.1 KEGG: sjp:SJA_C2-05080 SDR-family protein; PFAM: Short-chain dehydrogenase/reductase SDR YP_004555567.1 KEGG: sjp:SJA_C2-05070 esterase/lipase YP_004555568.1 KEGG: sjp:SJA_C2-05060 succinate-semialdehyde dehydrogenase (NADP+); PFAM: Aldehyde dehydrogenase YP_004555569.1 PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: sjp:SJA_C1-11810 SDR-family protein YP_004555570.1 KEGG: sjp:SJA_C2-04920 putative oxidoreductase; PFAM: NADH:flavin oxidoreductase/NADH oxidase, N-terminal YP_004555571.1 PFAM: Protein of unknown function DUF1330; KEGG: sjp:SJA_C2-04910 hypothetical protein YP_004555572.1 manually curated; PFAM: HTH transcriptional regulator, MarR; KEGG: sjp:SJA_C2-04900 MarR-family transcriptional regulator; SMART: HTH transcriptional regulator, MarR YP_004555573.1 PFAM: DSBA oxidoreductase; KEGG: cak:Caul_5257 DsbA oxidoreductase YP_004555574.1 PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: cak:Caul_5258 short-chain dehydrogenase/reductase SDR YP_004555576.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: sus:Acid_1431 NAD-dependent epimerase/dehydratase YP_004555577.1 PFAM: Major facilitator superfamily MFS-1; KEGG: hne:HNE_0948 major facilitator family transporter YP_004555578.1 PFAM: Peptidase M19, renal dipeptidase; KEGG: ppf:Pput_1643 peptidase M19, renal dipeptidase YP_004555579.1 PFAM: TonB-dependent receptor, plug; KEGG: mea:Mex_1p1076 hypothetical protein YP_004555580.1 TIGRFAM: Delta-1-pyrroline-5-carboxylate dehydrogenase 3; KEGG: sjp:SJA_C2-00750 1-pyrroline-5-carboxylate dehydrogenase; PFAM: Proline dehydrogenase; Aldehyde dehydrogenase YP_004555581.1 KEGG: sjp:SJA_C1-12960 Lrp/AsnC-family transcriptional regulator; PFAM: Transcription regulator, AsnC-type, C-terminal; SMART: Transcription regulator, AsnC-type YP_004555582.1 TIGRFAM: S-formylglutathione hydrolase; KEGG: sjp:SJA_C2-02870 putative esterase; PFAM: Putative esterase YP_004555583.1 KEGG: rpt:Rpal_2166 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase; TIGRFAM: Alcohol dehydrogenase class III/S-(hydroxymethyl)glutathione dehydrogenase; PFAM: Alcohol dehydrogenase, zinc-binding; Alcohol dehydrogenase GroES-like YP_004555584.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: sjp:SJA_C2-02890 LysR-family transcriptional regulator YP_004555585.1 KEGG: sjp:SJA_C1-17090 glutathione reductase (NADPH); PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation YP_004555586.1 KEGG: swi:Swit_4336 beta-ketoadipyl CoA thiolase; TIGRFAM: Beta-ketoadipyl CoA thiolase; Thiolase YP_004555587.1 TIGRFAM: 3-oxoacid CoA-transferase, subunit B; KEGG: swi:Swit_4337 butyryl-CoA:acetate CoA transferase; PFAM: Coenzyme A transferase YP_004555588.1 TIGRFAM: 3-oxoacid CoA-transferase, subunit A; KEGG: swi:Swit_4338 3-oxoacid CoA-transferase, A subunit; PFAM: Coenzyme A transferase YP_004555589.1 TIGRFAM: Beta-ketoadipate transcriptional regulator, PcaR/PcaU/PobR; PFAM: Transcriptional regulator IclR, C-terminal; Transcriptional regulator IclR, N-terminal; KEGG: swi:Swit_4339 beta-ketoadipate pathway transcription regulator; SMART: Transcriptional regulator IclR, N-terminal YP_004555590.1 PFAM: Pyruvate carboxyltransferase; DmpG-like communication; TIGRFAM: 4-hydroxy-2-oxovalerate aldolase; HAMAP: 4-hydroxy-2-oxovalerate aldolase; KEGG: swi:Swit_4923 4-hydroxy-2-ketovalerate aldolase YP_004555591.1 PFAM: Acetaldehyde dehydrogenase, C-terminal; Semialdehyde dehydrogenase, NAD-binding; TIGRFAM: Acetaldehyde dehydrogenase; HAMAP: Acetaldehyde dehydrogenase; KEGG: swi:Swit_4924 acetaldehyde dehydrogenase YP_004555592.1 KEGG: swi:Swit_2110 transcriptional regulator IclR-like protein; PFAM: Transcriptional regulator IclR, C-terminal; Transcriptional regulator IclR, N-terminal; SMART: Transcriptional regulator IclR, N-terminal YP_004555593.1 KEGG: sjp:SJA_C2-00870 HAD-superfamily hydrolase; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase-like hydrolase YP_004555594.1 KEGG: met:M446_6598 acetyl-CoA acetyltransferase; PFAM: Beta-ketoacyl synthase, N-terminal YP_004555595.1 KEGG: fre:Franean1_3686 hypothetical protein YP_004555596.1 KEGG: req:REQ_45140 short chain dehydrogenase; PFAM: Short-chain dehydrogenase/reductase SDR YP_004555597.1 KEGG: cak:Caul_5271 ethyl tert-butyl ether degradation EthD; TIGRFAM: Ethyl tert-butyl ether degradation EthD; PFAM: Ethyl tert-butyl ether degradation EthD YP_004555598.1 KEGG: tpr:Tpau_3804 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR YP_004555599.1 KEGG: rpx:Rpdx1_2139 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase YP_004555600.1 PFAM: Crotonase, core; KEGG: bph:Bphy_2691 enoyl-CoA hydratase YP_004555601.1 PFAM: Haem peroxidase, plant/fungal/bacterial; TIGRFAM: Catalase-peroxidase haem; HAMAP: Catalase-peroxidase haem; KEGG: sjp:SJA_C2-05770 catalase/peroxidase YP_004555602.1 PFAM: YbaK/aminoacyl-tRNA synthetase associated region; KEGG: sjp:SJA_C2-05760 hypothetical protein YP_004555603.1 KEGG: swi:Swit_3602 acetyl-CoA acetyltransferase; TIGRFAM: Thiolase YP_004555604.1 PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: nar:Saro_3449 TetR family transcriptional regulator YP_004555605.1 KEGG: nar:Saro_3448 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR YP_004555606.1 KEGG: aci:ACIAD1566 putative acyl-CoA dehydrogenase family protein; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central region; Acyl-CoA dehydrogenase, N-terminal YP_004555607.1 PFAM: Aminoglycoside phosphotransferase; KEGG: nar:Saro_1706 aminoglycoside phosphotransferase YP_004555608.1 PFAM: Polysaccharide deacetylase; KEGG: cak:Caul_1846 polysaccharide deacetylase YP_004555609.1 PFAM: Acyltransferase 3; KEGG: pla:Plav_1946 acyltransferase 3 YP_004555610.1 PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: sjp:SJA_C2-02840 TetR-family transcriptional regulator YP_004555611.1 PFAM: Major facilitator superfamily MFS-1; KEGG: sjp:SJA_C1-10200 putative MFS permease YP_004555612.1 TIGRFAM: Cysteine synthase A; Cysteine synthase K/M; KEGG: sjp:SJA_C1-10190 cysteine synthase; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit YP_004555613.1 PFAM: Cell wall hydrolase, SleB; KEGG: sjp:SJA_C1-10180 SleB-like protein YP_004555614.1 KEGG: sjp:SJA_C2-05620 signal transduction histidine kinase; PFAM: ATP-binding region, ATPase-like; GAF; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; Signal transduction response regulator, receiver region; SMART: ATP-binding region, ATPase-like; GAF; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; Signal transduction response regulator, receiver region YP_004555615.1 PFAM: Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal; Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation region; Signal transduction response regulator, receiver region; KEGG: bid:Bind_1961 response regulator receiver protein; SMART: Signal transduction response regulator, receiver region YP_004555616.1 PFAM: Signal transduction histidine kinase, phosphotransfer (Hpt) region; KEGG: bid:Bind_1958 multi-sensor hybrid histidine kinase YP_004555617.1 KEGG: rhi:NGR_b14580 putative sensor-regulator protein; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; CHASE; Signal transduction response regulator, receiver region; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; Signal transduction response regulator, receiver region YP_004555618.1 KEGG: gca:Galf_1830 Sel1 domain-containing protein repeat-containing protein; PFAM: Sel1-like; SMART: Sel1-like YP_004555619.1 TIGRFAM: 3-oxoacid CoA-transferase, subunit B; KEGG: sjp:SJA_C1-33150 3-oxoacid CoA-transferase subunit B; PFAM: Coenzyme A transferase YP_004555620.1 TIGRFAM: 3-oxoacid CoA-transferase, subunit A; KEGG: sjp:SJA_C1-33160 3-oxoacid CoA-transferase subunit A; PFAM: Coenzyme A transferase YP_004555621.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: sal:Sala_2122 LysR family transcriptional regulator YP_004555622.1 KEGG: sjp:SJA_C2-05610 hypothetical protein YP_004555623.1 KEGG: sjp:SJA_C2-05600 putative nonribosomal peptide synthetase; PFAM: AMP-dependent synthetase/ligase YP_004555624.1 KEGG: sjp:SJA_C2-05590 putative cyclopropane fatty acid synthase; PFAM: Cyclopropane-fatty-acyl-phospholipid synthase YP_004555625.1 PFAM: Phosphopantetheine-binding; KEGG: sjp:SJA_C2-05580 putative polyketide synthase module YP_004555626.1 PFAM: Autoinducer synthesis protein; KEGG: sjp:SJA_C2-05570 putative autoinducer synthesis protein TraI YP_004555627.1 KEGG: sjp:SJA_C2-05560 hypothetical protein YP_004555628.1 PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: sjp:SJA_C2-05550 TonB-dependent receptor-like protein YP_004555629.1 TIGRFAM: Diguanylate cyclase, predicted; PAS; PFAM: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; PAS fold-3; PAS fold; KEGG: sjp:SJA_C2-05540 putative sensor protein; SMART: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; PAS YP_004555630.1 PFAM: Major facilitator superfamily MFS-1; KEGG: sjp:SJA_C2-05520 putative MFS permease YP_004555631.1 KEGG: sjp:SJA_C2-05510 gluconate 5-dehydrogenase; PFAM: Short-chain dehydrogenase/reductase SDR YP_004555632.1 KEGG: sjp:SJA_C2-05500 oligopeptidase A; PFAM: Peptidase M3A/M3B, thimet/oligopeptidase F YP_004555633.1 KEGG: sjp:SJA_C2-05490 hypothetical protein YP_004555634.1 PFAM: FAD dependent oxidoreductase; KEGG: swi:Swit_2506 hypothetical protein YP_004555635.1 KEGG: sjp:SJA_C2-04380 hypothetical protein YP_004555636.1 SMART: Extracellular solute-binding protein, family 3; KEGG: sjp:SJA_C2-04370 ABC-type transport system periplasmic component YP_004555637.1 PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central region; Acyl-CoA dehydrogenase, N-terminal; KEGG: sjp:SJA_C2-04360 putative acyl-CoA dehydrogenase YP_004555638.1 KEGG: sjp:SJA_C2-04350 putative dehydrogenase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding YP_004555639.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: sjp:SJA_C2-04340 LysR-family transcriptional regulator YP_004555640.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: sjp:SJA_C2-04330 ABC-type transport system permease component YP_004555641.1 PFAM: ABC transporter-like; KEGG: sjp:SJA_C2-04320 ABC-type transport system ATPase component; SMART: ATPase, AAA+ type, core YP_004555642.1 PFAM: Cysteine dioxygenase type I; KEGG: sjp:SJA_C2-04310 putative cysteine dioxygenase type I YP_004555643.1 KEGG: sjp:SJA_C2-04300 rhodanese-like protein; PFAM: Rhodanese-like; SMART: Rhodanese-like YP_004555644.1 KEGG: bid:Bind_2692 alkanesulfonate monooxygenase; PFAM: Luciferase-like, subgroup YP_004555645.1 KEGG: sjp:SJA_C2-04290 ABC-type transport system periplasmic component; TIGRFAM: ABC transporter, substrate-binding protein, aliphatic sulphonates; SMART: Extracellular solute-binding protein, family 3 YP_004555646.1 PFAM: Class II aldolase/adducin, N-terminal; KEGG: sjp:SJA_C2-04280 putative aldolase class II YP_004555647.1 PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: azl:AZL_b01500 transcriptional regulator YP_004555648.1 PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: nar:Saro_3870 TonB-dependent receptor YP_004555649.1 PFAM: Taurine catabolism dioxygenase TauD/TfdA; KEGG: swi:Swit_0370 taurine catabolism dioxygenase TauD/TfdA YP_004555650.1 KEGG: swi:Swit_0369 NADH:flavin oxidoreductase/NADH oxidase; PFAM: NADH:flavin oxidoreductase/NADH oxidase, N-terminal; Amine oxidase; Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region YP_004555651.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: swi:Swit_0354 transcriptional regulator YP_004555652.1 KEGG: swi:Swit_0372 hypothetical protein YP_004555653.1 PFAM: TonB-dependent receptor, beta-barrel; KEGG: swi:Swit_3653 TonB-dependent receptor YP_004555654.1 KEGG: bcm:Bcenmc03_6821 AraC family transcriptional regulator; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain YP_004555655.1 KEGG: swi:Swit_0328 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR YP_004555656.1 PFAM: Carboxymuconolactone decarboxylase; KEGG: swi:Swit_0311 carboxymuconolactone decarboxylase YP_004555657.1 PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: swi:Swit_0277 TonB-dependent receptor YP_004555658.1 PFAM: Phytanoyl-CoA dioxygenase; KEGG: swi:Swit_0327 phytanoyl-CoA dioxygenase YP_004555659.1 KEGG: cse:Cseg_1291 SMP-30/gluconolaconase/LRE domain-containing protein; PFAM: SMP-30/Gluconolaconase/LRE-like region; SMART: Low-density lipoprotein receptor, YWTD repeat YP_004555660.1 PFAM: Taurine catabolism dioxygenase TauD/TfdA; KEGG: swi:Swit_4839 taurine catabolism dioxygenase TauD/TfdA YP_004555661.1 PFAM: Aminoglycoside phosphotransferase; KEGG: swi:Swit_0329 hypothetical protein YP_004555662.1 KEGG: swi:Swit_0331 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR YP_004555663.1 KEGG: swi:Swit_0350 alcohol dehydrogenase; PFAM: Alcohol dehydrogenase GroES-like; Alcohol dehydrogenase, zinc-binding YP_004555664.1 PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: swi:Swit_0337 short-chain dehydrogenase/reductase SDR YP_004555665.1 PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: azl:AZL_b01500 transcriptional regulator YP_004555666.1 TIGRFAM: Ethyl tert-butyl ether degradation EthD; PFAM: Ethyl tert-butyl ether degradation EthD YP_004555667.1 KEGG: swi:Swit_0300 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR YP_004555668.1 KEGG: swi:Swit_0362 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR YP_004555669.1 KEGG: swi:Swit_0360 MarR family transcriptional regulator; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR YP_004555670.1 KEGG: swi:Swit_0361 cytochrome P450; PFAM: Cytochrome P450 YP_004555671.1 PFAM: Ferredoxin; KEGG: swi:Swit_0363 ferredoxin YP_004555672.1 PFAM: Cytochrome P450; KEGG: swi:Swit_0364 cytochrome P450 YP_004555673.1 PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: swi:Swit_0365 TetR family transcriptional regulator YP_004555674.1 KEGG: swi:Swit_0366 glucose-methanol-choline oxidoreductase; PFAM: Glucose-methanol-choline oxidoreductase, N-terminal; Glucose-methanol-choline oxidoreductase, C-terminal YP_004555675.1 PFAM: Beta-lactamase-related; KEGG: swi:Swit_0367 beta-lactamase YP_004555676.1 PFAM: Crotonase, core; KEGG: swi:Swit_0368 enoyl-CoA hydratase/isomerase YP_004555677.1 KEGG: swi:Swit_0276 hypothetical protein YP_004555679.1 KEGG: swi:Swit_0278 GntR family transcriptional regulator; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: HTH transcriptional regulator, GntR YP_004555680.1 KEGG: swi:Swit_0333 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR YP_004555681.1 KEGG: fal:FRAAL3539 oxidoreductase NAD(P)-binding subunit; PFAM: Short-chain dehydrogenase/reductase SDR YP_004555682.1 PFAM: SMP-30/Gluconolaconase/LRE-like region; KEGG: swi:Swit_0279 gluconolactonase YP_004555683.1 KEGG: swi:Swit_0280 hypothetical protein YP_004555684.1 KEGG: swi:Swit_0281 hypothetical protein YP_004555685.1 KEGG: swi:Swit_0282 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase YP_004555687.1 KEGG: swi:Swit_0283 L-carnitine dehydratase/bile acid-inducible protein F; PFAM: CoA-transferase family III YP_004555688.1 PFAM: Xylose isomerase, TIM barrel domain; KEGG: swi:Swit_0284 xylose isomerase domain-containing protein YP_004555689.1 PFAM: Ferredoxin; KEGG: swi:Swit_0285 ferredoxin YP_004555690.1 KEGG: swi:Swit_0286 alcohol dehydrogenase; PFAM: Alcohol dehydrogenase GroES-like; Alcohol dehydrogenase, zinc-binding YP_004555691.1 KEGG: swi:Swit_0287 hypothetical protein YP_004555692.1 KEGG: swi:Swit_0289 L-carnitine dehydratase/bile acid-inducible protein F; PFAM: CoA-transferase family III YP_004555693.1 PFAM: Crotonase, core; KEGG: swi:Swit_0290 enoyl-CoA hydratase YP_004555694.1 KEGG: swi:Swit_0291 NADH:flavin oxidoreductase/NADH oxidase; PFAM: NADH:flavin oxidoreductase/NADH oxidase, N-terminal YP_004555695.1 KEGG: swi:Swit_0292 hypothetical protein YP_004555696.1 KEGG: swi:Swit_0293 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR YP_004555697.1 KEGG: swi:Swit_0353 hypothetical protein YP_004555698.1 KEGG: swi:Swit_0371 hypothetical protein YP_004555699.1 PFAM: Oxidoreductase, N-terminal; KEGG: swi:Swit_0294 oxidoreductase domain-containing protein YP_004555700.1 PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: gbe:GbCGDNIH1_1457 TetR family transcriptional regulator YP_004555701.1 PFAM: Amidohydrolase 3; D-aminoacylase, C-terminal; KEGG: swi:Swit_0356 amidohydrolase 3 YP_004555702.1 PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: swi:Swit_0365 TetR family transcriptional regulator YP_004555703.1 KEGG: swi:Swit_0295 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR YP_004555704.1 KEGG: swi:Swit_0296 palmitoyl-CoA hydrolase; PFAM: Acyl-CoA thioesterase YP_004555705.1 PFAM: Major facilitator superfamily MFS-1; KEGG: swi:Swit_0298 major facilitator transporter YP_004555706.1 PFAM: Crotonase, core; KEGG: swi:Swit_0299 enoyl-CoA hydratase YP_004555707.1 PFAM: Taurine catabolism dioxygenase TauD/TfdA; KEGG: swi:Swit_0370 taurine catabolism dioxygenase TauD/TfdA YP_004555708.1 PFAM: Amidohydrolase 2; KEGG: swi:Swit_0386 amidohydrolase 2 YP_004555709.1 PFAM: Crotonase, core; KEGG: swi:Swit_0385 enoyl-CoA hydratase/isomerase YP_004555710.1 KEGG: swi:Swit_0357 epocide hydrolase domain-containing protein; PFAM: Epoxide hydrolase, N-terminal YP_004555711.1 PFAM: Uncharacterised conserved protein UCP07580; KEGG: swi:Swit_0358 metal-dependent hydrolase-like protein YP_004555712.1 KEGG: rcu:RCOM_1834840 hypothetical protein YP_004555713.1 KEGG: swi:Swit_0384 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase YP_004555714.1 PFAM: Major facilitator superfamily MFS-1; KEGG: swi:Swit_0383 major facilitator transporter YP_004555715.1 KEGG: swi:Swit_0382 aldehyde dehydrogenase; PFAM: Aldehyde dehydrogenase YP_004555716.1 KEGG: swi:Swit_0380 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR YP_004555717.1 KEGG: swi:Swit_0379 glucose-methanol-choline oxidoreductase; PFAM: Glucose-methanol-choline oxidoreductase, N-terminal; Glucose-methanol-choline oxidoreductase, C-terminal YP_004555718.1 PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: kfl:Kfla_6871 short-chain dehydrogenase/reductase SDR YP_004555719.1 PFAM: Acyl-CoA oxidase/dehydrogenase, central region; Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, type 1; KEGG: swi:Swit_0376 acyl-CoA dehydrogenase domain-containing protein YP_004555720.1 PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA dehydrogenase, N-terminal; KEGG: swi:Swit_0375 acyl-CoA dehydrogenase domain-containing protein YP_004555721.1 KEGG: swi:Swit_0374 MarR family transcriptional regulator; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR YP_004555722.1 KEGG: swi:Swit_0373 hypothetical protein YP_004555723.1 KEGG: swi:Swit_0372 hypothetical protein YP_004555724.1 PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: swi:Swit_0302 TonB-dependent receptor YP_004555725.1 PFAM: Protein of unknown function DUF227; KEGG: swi:Swit_0303 hypothetical protein YP_004555726.1 KEGG: swi:Swit_0306 hypothetical protein YP_004555727.1 KEGG: swi:Swit_0310 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase YP_004555728.1 PFAM: Carboxymuconolactone decarboxylase; KEGG: swi:Swit_0311 carboxymuconolactone decarboxylase YP_004555729.1 PFAM: Amidohydrolase 2; KEGG: swi:Swit_0313 amidohydrolase 2 YP_004555730.1 KEGG: swi:Swit_0314 transcriptional regulator IclR-like protein; PFAM: Transcriptional regulator IclR, C-terminal; Transcriptional regulator IclR, N-terminal; SMART: Transcriptional regulator IclR, N-terminal YP_004555731.1 PFAM: Transcriptional regulator IclR, N-terminal; KEGG: swi:Swit_0315 regulatory protein, IclR YP_004555732.1 PFAM: Alcohol dehydrogenase GroES-like; Alcohol dehydrogenase, zinc-binding; KEGG: swi:Swit_0316 alcohol dehydrogenase YP_004555733.1 KEGG: swi:Swit_0317 acyl-CoA dehydrogenase domain-containing protein; PFAM: Acyl-CoA oxidase/dehydrogenase, central region; Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, type 1 YP_004555734.1 KEGG: swi:Swit_0318 acyl-CoA dehydrogenase domain-containing protein; PFAM: Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, type 1 YP_004555735.1 PFAM: Phytanoyl-CoA dioxygenase; KEGG: swi:Swit_0319 phytanoyl-CoA dioxygenase YP_004555736.1 KEGG: swi:Swit_0320 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; PFAM: 3-hydroxyacyl-CoA dehydrogenase, NAD binding; 3-hydroxyacyl-CoA dehydrogenase, C-terminal YP_004555737.1 PFAM: Crotonase, core; KEGG: swi:Swit_0321 1,4-dihydroxy-2-naphthoate synthase YP_004555738.1 KEGG: swi:Swit_0322 3-hydroxyacyl-CoA dehydrogenase / short chain enoyl-CoA hydratase; PFAM: 3-hydroxyacyl-CoA dehydrogenase, NAD binding; Crotonase, core; 3-hydroxyacyl-CoA dehydrogenase, C-terminal YP_004555739.1 KEGG: swi:Swit_0323 acyl-CoA dehydrogenase domain-containing protein; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, central region YP_004555740.1 PFAM: Rieske [2Fe-2S] iron-sulphur domain; KEGG: swi:Swit_0324 Rieske (2Fe-2S) domain-containing protein YP_004555741.1 PFAM: Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal; KEGG: swi:Swit_0325 3-ketosteroid-delta-1-dehydrogenase YP_004555742.1 KEGG: swi:Swit_0326 transcriptional regulator; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain YP_004555743.1 KEGG: swi:Swit_0328 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR YP_004555744.1 PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: swi:Swit_0330 TonB-dependent receptor YP_004555745.1 KEGG: cse:Cseg_0089 hypothetical protein; manually curated; PFAM: Protein of unknown function DUF6, transmembrane YP_004555746.1 KEGG: swi:Swit_0333 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR YP_004555747.1 KEGG: swi:Swit_0334 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR YP_004555748.1 KEGG: swi:Swit_0335 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR YP_004555749.1 PFAM: Rieske [2Fe-2S] iron-sulphur domain; KEGG: swi:Swit_0336 Rieske (2Fe-2S) domain-containing protein YP_004555750.1 KEGG: swi:Swit_0340 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR YP_004555751.1 PFAM: Crotonase, core; KEGG: swi:Swit_0341 enoyl-CoA hydratase YP_004555752.1 KEGG: swi:Swit_0346 pyruvate dehydrogenase (acetyl-transferring); PFAM: Dehydrogenase, E1 component YP_004555753.1 KEGG: swi:Swit_0347 transketolase, central region; PFAM: Transketolase-like, pyrimidine-binding domain; Transketolase, C-terminal YP_004555754.1 PFAM: Biotin/lipoyl attachment; KEGG: swi:Swit_0348 biotin/lipoyl attachment domain-containing protein YP_004555755.1 KEGG: swi:Swit_0349 hypothetical protein YP_004555756.1 KEGG: bcm:Bcenmc03_6877 dihydrolipoyllysine-residue succinyltransferase; PFAM: 2-oxoacid dehydrogenase acyltransferase, catalytic domain YP_004555757.1 KEGG: swi:Swit_0351 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase YP_004555758.1 PFAM: Glutathione S-transferase, N-terminal; KEGG: rce:RC1_2324 glutathione S-transferase YP_004555759.1 PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: swi:Swit_0352 short-chain dehydrogenase/reductase SDR YP_004555760.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: swi:Swit_0354 transcriptional regulator YP_004555761.1 PFAM: Taurine catabolism dioxygenase TauD/TfdA; KEGG: swi:Swit_0297 taurine catabolism dioxygenase TauD/TfdA YP_004555762.1 KEGG: ami:Amir_2891 transcriptional regulator, TetR family YP_004555763.1 KEGG: swi:Swit_0342 thiolase YP_004555764.1 PFAM: Protein of unknown function DUF35; KEGG: swi:Swit_0343 hypothetical protein YP_004555765.1 PFAM: Crotonase, core; KEGG: swi:Swit_0344 enoyl-CoA hydratase YP_004555766.1 KEGG: swi:Swit_0345 acetyl-CoA acetyltransferase; TIGRFAM: Thiolase YP_004555767.1 PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: nar:Saro_3719 short-chain dehydrogenase/reductase SDR YP_004555768.1 KEGG: swi:Swit_0355 hypothetical protein YP_004555769.1 PFAM: Amidohydrolase 3; D-aminoacylase, C-terminal; KEGG: swi:Swit_0356 amidohydrolase 3 YP_004555770.1 PFAM: Major facilitator superfamily MFS-1; KEGG: swi:Swit_0298 major facilitator transporter YP_004555771.1 PFAM: Cytochrome P450; KEGG: swi:Swit_0359 cytochrome P450 YP_004555772.1 KEGG: azl:AZL_b06200 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR YP_004555773.1 TIGRFAM: FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family; KEGG: bid:Bind_1224 NtaA/SnaA/SoxA family monooxygenase YP_004555774.1 TIGRFAM: FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family; KEGG: sjp:SJA_C2-01500 putative monooxygenase YP_004555775.1 KEGG: cak:Caul_0963 alpha/beta hydrolase domain-containing protein YP_004555776.1 PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; KEGG: pzu:PHZ_c2139 TonB-dependent receptor YP_004555777.1 PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: hne:HNE_2447 TetR family transcriptional regulator YP_004555778.1 KEGG: nar:Saro_1725 hypothetical protein YP_004555779.1 PFAM: Cation/H+ exchanger; KEGG: bsb:Bresu_2066 sodium/hydrogen exchanger YP_004555780.1 KEGG: swi:Swit_0129 hypothetical protein YP_004555781.1 PFAM: MgtC/SapB transporter; KEGG: cse:Cseg_0678 MgtC/SapB transporter YP_004555782.1 PFAM: Peroxiredoxin, OsmC-like protein; KEGG: swi:Swit_0982 OsmC family protein YP_004555783.1 PFAM: Pirin, N-terminal; KEGG: sjp:SJA_C1-25380 pirin-related protein YP_004555784.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: sjp:SJA_C1-25370 LysR-family transcriptional regulator YP_004555785.1 PFAM: Protein of unknown function DUF1211 YP_004555787.1 PFAM: Protein of unknown function DUF1275; KEGG: sjp:SJA_C1-25350 hypothetical protein YP_004555788.1 KEGG: sjp:SJA_C1-25340 hypothetical protein YP_004555789.1 PFAM: DoxX; KEGG: sjp:SJA_C1-25330 hypothetical protein YP_004555791.1 PFAM: Amidohydrolase 3; KEGG: sjp:SJA_C1-25310 putative hydrolase YP_004555792.1 KEGG: sjp:SJA_C1-25300 hypothetical protein; TIGRFAM: XapX domain; PFAM: Protein of unknown function DUF1427 YP_004555793.1 PFAM: Isochorismatase-like; KEGG: sjp:SJA_C1-25280 putative alpha/beta hydrolase YP_004555794.1 KEGG: cpi:Cpin_6040 hypothetical protein YP_004555795.1 PFAM: Transposase IS3/IS911; Integrase, catalytic core; KEGG: rde:RD1_3380 integrase catalytic subunit YP_004555797.1 PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: acr:Acry_3038 TetR family transcriptional regulator YP_004555798.1 KEGG: sjp:SJA_C2-01510 RND-family efflux transporter; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT; PFAM: Outer membrane efflux protein YP_004555799.1 KEGG: sjp:SJA_C2-01520 putative multidrug efflux pump; TIGRFAM: Hydrophobe/amphiphile efflux-1 HAE1; PFAM: Acriflavin resistance protein YP_004555800.1 KEGG: sjp:SJA_C2-01530 HlyD-family secretion protein; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD YP_004555801.1 KEGG: sjp:SJA_C2-01540 hypothetical protein YP_004555802.1 PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: sjp:SJA_C2-01550 TetR-family transcriptional regulator YP_004555803.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: sjp:SJA_C2-01560 LysR-family transcriptional regulator YP_004555804.1 KEGG: sjp:SJA_C2-01570 MarR-family transcriptional regulator; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR YP_004555805.1 PFAM: Homogentisate 1,2-dioxygenase; TIGRFAM: Homogentisate 1,2-dioxygenase; HAMAP: Homogentisate 1,2-dioxygenase; KEGG: sjp:SJA_C2-01580 homogentisate 1,2-dioxygenase YP_004555806.1 TIGRFAM: Fumarylacetoacetase; KEGG: sjp:SJA_C2-01590 fumarylacetoacetase; PFAM: Fumarylacetoacetase, N-terminal; Fumarylacetoacetase, C-terminal-like YP_004555807.1 TIGRFAM: Maleylacetoacetate isomerase; KEGG: sjp:SJA_C2-01600 maleylacetoacetate isomerase; PFAM: Glutathione S-transferase, N-terminal; Glutathione S-transferase, C-terminal YP_004555808.1 PFAM: NADH:ubiquinone oxidoreductase, 24kDa subunit; KEGG: sjp:SJA_C2-01610 NAD-dependent formate dehydrogenase gamma subunit YP_004555809.1 KEGG: sjp:SJA_C2-01620 NAD-dependent formate dehydrogenase beta subunit; PFAM: NADH:ubiquinone oxidoreductase, 51kDa subunit; Soluble ligand binding domain; NADH ubiquinone oxidoreductase, F subunit, iron sulphur binding YP_004555810.1 KEGG: sjp:SJA_C2-01630 NAD-dependent formate dehydrogenase alpha subunit; TIGRFAM: Formate dehydrogenase, alpha subunit; PFAM: Molybdopterin oxidoreductase; NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding; Ferredoxin; 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; Molybdopterin oxidoreductase Fe4S4 region; Molydopterin dinucleotide-binding region YP_004555811.1 KEGG: sjp:SJA_C2-01640 NAD-dependent formate dehydrogenase delta subunit YP_004555812.1 KEGG: sjp:SJA_C2-01650 formate dehydrogenase accessory protein FdhD; TIGRFAM: Formate dehydrogenase, subunit FdhD; PFAM: Formate dehydrogenase, subunit FdhD YP_004555813.1 PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: sjp:SJA_C2-01700 TetR-family transcriptional regulator YP_004555814.1 PFAM: General substrate transporter; KEGG: nar:Saro_2623 general substrate transporter YP_004555815.1 KEGG: nar:Saro_2624 hypothetical protein YP_004555816.1 PFAM: AMP-dependent synthetase/ligase; TIGRFAM: Acetate--CoA ligase; HAMAP: Acetyl-coenzyme A synthetase; KEGG: nar:Saro_2625 acetyl-coenzyme A synthetase YP_004555817.1 KEGG: nar:Saro_2626 two component LuxR family transcriptional regulator; PFAM: Transcription regulator LuxR, C-terminal; Signal transduction response regulator, receiver region; SMART: Transcription regulator LuxR, C-terminal; Signal transduction response regulator, receiver region YP_004555818.1 TIGRFAM: PAS; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; PAS fold-4; Signal transduction response regulator, receiver region; KEGG: nar:Saro_2627 multi-sensor hybrid histidine kinase; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; PAS; Signal transduction response regulator, receiver region YP_004555819.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: swi:Swit_5155 LysR family transcriptional regulator YP_004555820.1 TIGRFAM: Pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit, subgroup y; KEGG: sjp:SJA_C1-14490 pyruvate dehydrogenase E1 component alpha subunit; PFAM: Dehydrogenase, E1 component YP_004555821.1 PFAM: Transketolase-like, pyrimidine-binding domain; Biotin/lipoyl attachment; Transketolase, C-terminal; KEGG: sjp:SJA_C1-14500 pyruvate dehydrogenase E1 component beta subunit YP_004555822.1 PFAM: Blue (type 1) copper domain; KEGG: gur:Gura_2109 hypothetical protein YP_004555823.1 KEGG: sjp:SJA_C2-03490 MarR-family transcriptional regulator; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR YP_004555824.1 KEGG: swi:Swit_3261 taurine dioxygenase; PFAM: Taurine catabolism dioxygenase TauD/TfdA YP_004555825.1 TIGRFAM: ABC transporter, substrate-binding protein, aliphatic sulphonates; PFAM: Extracellular solute-binding protein, family 3; KEGG: cse:Cseg_2022 aliphatic sulfonates family ABC transporter periplasmic ligand-binding protein; SMART: Extracellular solute-binding protein, family 3 YP_004555826.1 PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: swi:Swit_2507 TonB-dependent receptor YP_004555828.1 PFAM: Protein of unknown function DUF1636; KEGG: sjp:SJA_C2-03350 hypothetical protein YP_004555829.1 PFAM: Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase-like, core; TIGRFAM: Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase, core, prokaryotic; HAMAP: Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase, core, prokaryotic; KEGG: sjp:SJA_C2-03340 nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase YP_004555830.1 PFAM: Phosphoglycerate mutase; KEGG: sjp:SJA_C2-03330 phosphoglycerate/bisphosphoglycerate mutase family protein YP_004555831.1 KEGG: sjp:SJA_C2-03320 cobalamin-5-phosphate synthase CobS; HAMAP: Cobalamin (vitamin B12) biosynthesis CobS, cobalamin-5-phosphate synthase; PFAM: Cobalamin (vitamin B12) biosynthesis CobS, cobalamin-5-phosphate synthase YP_004555832.1 KEGG: sjp:SJA_C2-03310 cobalamin biosynthesis CobC; TIGRFAM: L-threonine-O-3-phosphate decarboxylase; PFAM: Aminotransferase, class I/II YP_004555833.1 TIGRFAM: Cobalamin (vitamin B12) biosynthesis CbiB; HAMAP: Cobalamin biosynthesis protein cbiB; KEGG: sjp:SJA_C2-03300 cobalamin biosynthesis CobD/CbiB; PFAM: Cobalamin (vitamin B12) biosynthesis CbiB YP_004555834.1 KEGG: sjp:SJA_C2-03290 cobalamin biosynthesis enzyme; PFAM: Cobinamide kinase/cobinamide phosphate guanyltransferase YP_004555835.1 KEGG: sjp:SJA_C2-03280 RND-family efflux transporter; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT; PFAM: Outer membrane efflux protein YP_004555836.1 KEGG: sjp:SJA_C2-03270 HAE1-family efflux protein; TIGRFAM: Hydrophobe/amphiphile efflux-1 HAE1; PFAM: Acriflavin resistance protein YP_004555837.1 KEGG: sjp:SJA_C2-03260 HlyD-family secretion protein; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD YP_004555839.1 KEGG: sjp:SJA_C2-03250 response regulator; PFAM: Signal transduction response regulator, receiver region; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver region YP_004555840.1 KEGG: sjp:SJA_C2-03240 signal transduction histidine kinase; PFAM: ATP-binding region, ATPase-like; HAMP linker domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; HAMP linker domain YP_004555841.1 KEGG: sjp:SJA_C2-03230 serine protein kinase; PFAM: PrkA AAA; PrkA serine kinase; SMART: PrkA AAA YP_004555842.1 KEGG: sjp:SJA_C2-03220 hypothetical protein; HAMAP: UPF0229 protein yeaH; PFAM: Protein of unknown function DUF444 YP_004555843.1 PFAM: Sporulation stage V, protein R; KEGG: sjp:SJA_C2-03210 SpoVR-family protein YP_004555844.1 KEGG: sjp:SJA_C2-03200 hypothetical protein YP_004555845.1 TIGRFAM: Cobalamin (vitamin B12) biosynthesis CobF, precorrin-6A synthase; KEGG: sjp:SJA_C2-03190 precorrin-6A synthase deacetylating; PFAM: Tetrapyrrole methylase YP_004555846.1 TIGRFAM: Cobyrinic acid a,c-diamide synthase CbiA; HAMAP: Cobyrinic acid A,C-diamide synthase; KEGG: sjp:SJA_C2-03180 cobyrinic acid a,c-diamide synthase; PFAM: CobB/CobQ-like glutamine amidotransferase; Cobyrinic acid a,c-diamide synthase YP_004555847.1 TIGRFAM: Cobalamin (vitamin B12) biosynthesis CobM/CbiF, precorrin-4 C11-methyltransferase, core; KEGG: sjp:SJA_C2-03170 precorrin-4 methyltransferase; PFAM: Tetrapyrrole methylase YP_004555848.1 PFAM: Cobalamin (vitamin B12) biosynthesis CbiG, core; KEGG: sjp:SJA_C2-03160 cobalamin biosynthesis protein G YP_004555849.1 TIGRFAM: Cobalamin (vitamin B12) biosynthesis CbiE, precorrin-6Y methyltransferase, core; Cobalamin (vitamin B12) biosynthesis CbiT, precorrin-6Y methyltransferase-core; KEGG: sjp:SJA_C2-03150 precorrin-6Y C5,15-methyltransferase; PFAM: Tetrapyrrole methylase YP_004555850.1 TIGRFAM: Cobalamin (vitamin B12) biosynthesis CobK/CbiJ, precorrin-6x reductase; KEGG: sjp:SJA_C2-03140 precorrin-6X reductase; PFAM: Cobalamin (vitamin B12) biosynthesis CobK/CbiJ, precorrin-6x reductase YP_004555851.1 TIGRFAM: Cobalamin (vitamin B12) biosynthesis CobJ/CibH, precorrin-3B C17-methyltransferase, core; KEGG: sjp:SJA_C2-03130 precorrin-3B C17-methyltransferase; PFAM: Tetrapyrrole methylase YP_004555852.1 TIGRFAM: Cobalamin (vitamin B12) biosynthesis CobI/CbiL, precorrin-2 C20-methyltransferase, core; KEGG: sjp:SJA_C2-03120 precorrin-2 C20-methyltransferase; PFAM: Tetrapyrrole methylase YP_004555853.1 KEGG: sjp:SJA_C2-03110 precorrin-8X methylmutase; PFAM: Cobalamin (vitamin B12) biosynthesis CobH/CbiC, precorrin-8X methylmutase, core YP_004555854.1 manually curated; TIGRFAM: Cobalamin (vitamin B12) biosynthesis CobG-like; KEGG: sjp:SJA_C2-03100 cobalamin synthesis protein CobG; PFAM: Nitrite/sulphite reductase, hemoprotein beta-component, ferrodoxin-like YP_004555855.1 TIGRFAM: Cob(II)yrinic acid a,c-diamide reductase; KEGG: sjp:SJA_C2-03090 cob(II)yrinic acid a,c-diamide reductase; PFAM: Nitroreductase-like YP_004555856.1 TIGRFAM: Adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR; KEGG: sjp:SJA_C2-03080 cob(I)alamin adenosyltransferase; PFAM: Adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR YP_004555857.1 TIGRFAM: Cobaltochelatase, CobN subunit; KEGG: sjp:SJA_C2-03070 cobaltochelatase; PFAM: CobN/magnesium chelatase YP_004555858.1 KEGG: sjp:SJA_C2-03060 cobalamin biosynthesis protein CobW; TIGRFAM: Cobalamin (vitamin B12) biosynthesis CobW; PFAM: Cobalamin (vitamin B12) biosynthesis CobW-like; Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal YP_004555859.1 KEGG: sjp:SJA_C2-03050 high-affinity nickel-transport protein; TIGRFAM: Nickel/cobalt transporter, high-affinity, bacteria; PFAM: Nickel/cobalt transporter, high-affinity YP_004555860.1 PFAM: Sulphatase-modifying factor; KEGG: sjp:SJA_C2-03040 hypothetical protein YP_004555861.1 PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: nar:Saro_2580 TonB-dependent receptor YP_004555862.1 KEGG: sjp:SJA_C2-03030 hypothetical protein YP_004555863.1 KEGG: sjp:SJA_C2-03020 putative adenylate cyclase; PFAM: CHASE2; Adenylyl cyclase class-3/4/guanylyl cyclase; SMART: Adenylyl cyclase class-3/4/guanylyl cyclase YP_004555864.1 KEGG: sjp:SJA_C2-03010 hypothetical protein YP_004555865.1 PFAM: Polypeptide-transport-associated, ShlB-type; KEGG: sjp:SJA_C2-03000 putative hemolysin activation/secretion protein YP_004555866.1 TIGRFAM: Adhesin HecA 20-residue repeat x2; KEGG: sjp:SJA_C2-02990 putative outer membrane autotransporter YP_004555867.1 KEGG: sjp:SJA_C2-02980 hypothetical protein YP_004555868.1 PFAM: Protein of unknown function DUF336; KEGG: sjp:SJA_C2-02970 hypothetical protein YP_004555869.1 KEGG: sjp:SJA_C2-02960 hypothetical protein YP_004555870.1 PFAM: LVIVD; KEGG: sjp:SJA_C2-02950 LVIVD repeat protein precursor YP_004555871.1 PFAM: Metallophosphoesterase; KEGG: sjp:SJA_C2-02900 putative metallophosphoesterase YP_004555872.1 TIGRFAM: Doubled CXXCH motif; KEGG: sjp:SJA_C2-02910 hypothetical protein YP_004555873.1 KEGG: sjp:SJA_C2-02920 hypothetical protein YP_004555874.1 KEGG: sjp:SJA_C2-02930 iron-sulfur protein; PFAM: Cyclic nucleotide-binding; Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal; 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; SMART: Cyclic nucleotide-binding YP_004555875.1 KEGG: sjp:SJA_C2-02940 TPR repeat protein; PFAM: Tetratricopeptide TPR2; Tetratricopeptide TPR-1; SMART: Tetratricopeptide repeat YP_004555876.1 PFAM: Integrase, catalytic core; KEGG: sjp:SJA_C1-04450 putative transposase YP_004555877.1 PFAM: TonB-dependent receptor, plug; KEGG: mea:Mex_1p1076 hypothetical protein YP_004555878.1 PFAM: Peptidase M19, renal dipeptidase; KEGG: ppf:Pput_1643 peptidase M19, renal dipeptidase YP_004555879.1 PFAM: Major facilitator superfamily MFS-1; KEGG: hne:HNE_0948 major facilitator family transporter YP_004555880.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: sus:Acid_1431 NAD-dependent epimerase/dehydratase YP_004555882.1 KEGG: sjp:SJA_C2-04900 MarR-family transcriptional regulator; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR YP_004555883.1 PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: sjp:SJA_C2-04940 TetR-family transcriptional regulator YP_004555884.1 PFAM: Ferredoxin soy-like; KEGG: sjp:SJA_C2-04950 putative ferredoxin YP_004555885.1 KEGG: sjp:SJA_C2-04960 putative aryl-alcohol dehydrogenase; PFAM: Alcohol dehydrogenase, zinc-binding; Alcohol dehydrogenase GroES-like YP_004555886.1 KEGG: sjp:SJA_C2-04970 putative cytochrome P450; PFAM: Cytochrome P450 YP_004555887.1 KEGG: sjp:SJA_C2-04980 hypothetical protein YP_004555888.1 PFAM: MaoC-like dehydratase; KEGG: sjp:SJA_C2-04990 MaoC-like dehydratase YP_004555889.1 PFAM: CoA-transferase family III; KEGG: sjp:SJA_C2-05000 putative formyl-CoA transferase YP_004555890.1 PFAM: Aldehyde dehydrogenase; KEGG: sjp:SJA_C2-05010 putative betaine-aldehyde dehydrogenase YP_004555891.1 KEGG: sjp:SJA_C2-05020 SDR-family protein; PFAM: Short-chain dehydrogenase/reductase SDR YP_004555892.1 PFAM: Protein of unknown function DUF35; KEGG: sjp:SJA_C2-05030 hypothetical protein YP_004555893.1 KEGG: sjp:SJA_C2-05040 acetyl-CoA C-acetyltransferase YP_004555894.1 PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: sjp:SJA_C2-05050 TonB-dependent receptor-like protein YP_004555895.1 PFAM: 2-nitropropane dioxygenase, NPD; KEGG: sjp:SJA_C2-05140 2-nitropropane dioxygenase family protein YP_004555896.1 PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: sjp:SJA_C2-05150 TetR-family transcriptional regulator YP_004555898.1 PFAM: Cation/H+ exchanger; KEGG: sjp:SJA_C2-05230 putative Na+/H+ antiporter YP_004555900.1 PFAM: MltA-interacting MipA; KEGG: sjp:SJA_C2-05270 MltA-interacting MipA YP_004555901.1 PFAM: LytTr DNA-binding region; KEGG: sjp:SJA_C2-05280 LytR/AlgR-family transcriptional regulator YP_004555902.1 PFAM: Metallophosphoesterase; KEGG: sjp:SJA_C2-04410 putative secreted phosphoesterase YP_004555903.1 PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: sjp:SJA_C2-04420 TonB-dependent receptor-like protein YP_004555904.1 PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: pla:Plav_1647 TetR family transcriptional regulator YP_004555905.1 KEGG: swi:Swit_3751 hypothetical protein YP_004555906.1 KEGG: vap:Vapar_2064 TonB-dependent siderophore receptor; TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug YP_004555907.1 KEGG: reh:H16_A3217 hypothetical protein YP_004555908.1 PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: TetR family transcriptional regulator YP_004555909.1 PFAM: Aminoglycoside phosphotransferase; KEGG: swi:Swit_1478 aminoglycoside phosphotransferase YP_004555910.1 KEGG: swi:Swit_1479 acyl-CoA dehydrogenase domain-containing protein; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central region; Acyl-CoA dehydrogenase, N-terminal YP_004555911.1 KEGG: swi:Swit_1480 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR YP_004555912.1 KEGG: nar:Saro_1225 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR YP_004555913.1 PFAM: Crotonase, core; KEGG: pla:Plav_0849 enoyl-CoA hydratase YP_004555914.1 KEGG: rce:RC1_2696 AMP-dependent synthetase and ligase, putative; PFAM: AMP-dependent synthetase/ligase YP_004555915.1 KEGG: ccs:CCNA_01917 alpha-methylacyl-CoA racemase; PFAM: CoA-transferase family III YP_004555916.1 KEGG: ccs:CCNA_01017 long-chain-fatty-acid--CoA ligase; PFAM: AMP-dependent synthetase/ligase YP_004555917.1 KEGG: pzu:PHZ_c2524 acyl-CoA dehydrogenase; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, central region YP_004555918.1 KEGG: pzu:PHZ_c2525 acetyl-CoA acetyltransferase YP_004555919.1 PFAM: Protein of unknown function DUF35; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal; KEGG: pzu:PHZ_c2526 hypothetical protein YP_004555920.1 KEGG: pzu:PHZ_c2527 acyl dehydratase; PFAM: MaoC-like dehydratase YP_004555921.1 KEGG: bxe:Bxe_C0866 IclR family transcriptional regulator; PFAM: Transcriptional regulator IclR, N-terminal; Transcriptional regulator IclR, C-terminal; SMART: Transcriptional regulator IclR, N-terminal YP_004555922.1 KEGG: ccs:CCNA_00266 acetyl-CoA acetyltransferase; TIGRFAM: Thiolase YP_004555923.1 KEGG: short-chain dehydrogenase/reductase sdr; PFAM: Short-chain dehydrogenase/reductase SDR YP_004555924.1 KEGG: tcu:Tcur_2187 molybdopterin oxidoreductase; PFAM: Molybdopterin oxidoreductase; Molybdopterin oxidoreductase Fe4S4 region; Molydopterin dinucleotide-binding region YP_004555925.1 KEGG: tcu:Tcur_1030 hypothetical protein YP_004555926.1 PFAM: Polyketide cyclase/dehydrase; KEGG: pla:Plav_2087 hypothetical protein YP_004555927.1 KEGG: pzu:PHZ_c0733 long-chain-fatty-acid--CoA ligase; PFAM: AMP-dependent synthetase/ligase YP_004555928.1 PFAM: Alcohol dehydrogenase GroES-like; Alcohol dehydrogenase, zinc-binding; KEGG: pzu:PHZ_c0845 alcohol dehydrogenase class III YP_004555929.1 KEGG: amt:Amet_4539 glyoxalase/bleomycin resistance protein/dioxygenase YP_004555930.1 KEGG: pla:Plav_0804 long-chain-fatty-acid--CoA ligase; PFAM: AMP-dependent synthetase/ligase YP_004555931.1 PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: stp:Strop_4323 regulatory protein, TetR YP_004555932.1 KEGG: sjp:SJA_C1-23770 putative phosphohydrolase YP_004555933.1 PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: sjp:SJA_C1-23780 TonB-dependent receptor-like protein YP_004555934.1 PFAM: Major facilitator superfamily MFS-1; KEGG: sal:Sala_0508 major facilitator transporter YP_004555935.1 PFAM: Aldehyde dehydrogenase; KEGG: nar:Saro_2503 aldehyde dehydrogenase YP_004555936.1 KEGG: nar:Saro_2504 alcohol dehydrogenase, zinc-containing; PFAM: Alcohol dehydrogenase, zinc-binding; Alcohol dehydrogenase GroES-like YP_004555937.1 KEGG: swi:Swit_1447 alpha/beta hydrolase domain-containing protein YP_004555939.1 KEGG: acr:Acry_2361 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase YP_004555940.1 SMART: Helix-turn-helix, AraC domain; KEGG: nar:Saro_2508 AraC family transcriptional regulator YP_004555941.1 KEGG: pzu:PHZ_c2590 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR YP_004555942.1 KEGG: pzu:PHZ_c1832 putative monooxygenase; PFAM: Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal YP_004555943.1 KEGG: tcu:Tcur_1030 hypothetical protein YP_004555944.1 PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: swi:Swit_4214 TonB-dependent receptor YP_004555945.1 KEGG: cse:Cseg_0373 zinc metallohydrolase, glyoxalase II family YP_004555946.1 PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: mno:Mnod_1232 short-chain dehydrogenase/reductase SDR YP_004555947.1 PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: ebi:EbC_05560 transcriptional regulator, TetR family YP_004555948.1 KEGG: xca:xccb100_0451 outer membrane exporter; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT; PFAM: Outer membrane efflux protein YP_004555949.1 KEGG: pfl:PFL_0259 Bcr/CflA subfamily drug resistance transporter; TIGRFAM: Drug resistance transporter EmrB/QacA subfamily; PFAM: Major facilitator superfamily MFS-1 YP_004555950.1 PFAM: Secretion protein HlyD; KEGG: pfl:PFL_0258 HlyD family secretion protein YP_004555951.1 PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: pmy:Pmen_1100 short-chain dehydrogenase/reductase SDR YP_004555952.1 PFAM: Glutathione S-transferase, C-terminal; Glutathione S-transferase, N-terminal; KEGG: gvi:glr4372 glutathione S-transferase YP_004555953.1 PFAM: Major facilitator superfamily MFS-1; KEGG: hne:HNE_2215 major facilitator family transporter YP_004555954.1 KEGG: cst:CLOST_0195 2-deoxy-D-gluconate 3-dehydrogenase; PFAM: Short-chain dehydrogenase/reductase SDR YP_004555955.1 KEGG: sjp:SJA_C2-04070 hypothetical protein YP_004555956.1 PFAM: Rieske [2Fe-2S] iron-sulphur domain; KEGG: sjp:SJA_C2-03710 putative dioxygenase YP_004555957.1 KEGG: tcu:Tcur_2725 hypothetical protein YP_004555958.1 TIGRFAM: 3-isopropylmalate dehydratase, small subunit region; HAMAP: 3-isopropylmalate dehydratase, small subunit region; KEGG: swi:Swit_2315 3-isopropylmalate dehydratase, small subunit; PFAM: Aconitase A/isopropylmalate dehydratase small subunit, swivel YP_004555959.1 TIGRFAM: 3-isopropylmalate dehydratase, large subunit region; HAMAP: 3-isopropylmalate dehydratase, large subunit region; KEGG: swi:Swit_2316 3-isopropylmalate dehydratase, large subunit; PFAM: Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha YP_004555960.1 KEGG: swi:Swit_2317 pyruvate carboxyltransferase; PFAM: Pyruvate carboxyltransferase YP_004555961.1 KEGG: swi:Swit_2318 L-carnitine dehydratase/bile acid-inducible protein F; PFAM: CoA-transferase family III YP_004555962.1 PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: cak:Caul_3243 TonB-dependent receptor YP_004555963.1 KEGG: cag:Cagg_2751 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR YP_004555964.1 KEGG: mjl:Mjls_4793 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase YP_004555965.1 KEGG: vei:Veis_4652 hypothetical protein YP_004555966.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: fal:FRAAL5283 glyoxalase/bleomycin resistance protein YP_004555967.1 KEGG: pla:Plav_1807 acyl-CoA dehydrogenase domain-containing protein; PFAM: Acyl-CoA oxidase/dehydrogenase, central region; Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, type 1 YP_004555968.1 PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA dehydrogenase, N-terminal; KEGG: cse:Cseg_1598 acyl-CoA dehydrogenase domain-containing protein YP_004555969.1 KEGG: dbr:Deba_3134 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR YP_004555970.1 PFAM: MaoC-like dehydratase; KEGG: bpt:Bpet0378 acyl dehydratase YP_004555971.1 KEGG: reh:H16_A1297 acetyl-CoA acetyltransferase YP_004555972.1 PFAM: Protein of unknown function DUF35; KEGG: reh:H16_B0405 hypothetical protein YP_004555973.1 KEGG: sjp:SJA_C1-14090 acetyl-CoA C-acetyltransferase; TIGRFAM: Thiolase YP_004555974.1 PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central region; Acyl-CoA dehydrogenase, N-terminal; KEGG: sjp:SJA_C2-01720 acyl-CoA dehydrogenase YP_004555975.1 KEGG: scl:sce2609 3-oxoacyl-[acyl-carrier-protein] reductase; PFAM: Short-chain dehydrogenase/reductase SDR YP_004555976.1 PFAM: 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; KEGG: sjp:SJA_C2-04400 putative iron-sulfur cluster binding protein YP_004555977.1 PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: sjp:SJA_C2-02430 SDR-family protein YP_004555978.1 KEGG: sjp:SJA_C2-02420 AraC-family transcriptional regulator; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain YP_004555979.1 KEGG: nar:Saro_2818 methylitaconate delta2-delta3-isomerase; manually curated; PFAM: PrpF protein YP_004555980.1 KEGG: nar:Saro_2817 hypothetical protein; TIGRFAM: 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase; PFAM: Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase YP_004555981.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: nar:Saro_2816 LysR family transcriptional regulator YP_004555982.1 PFAM: Phosphogluconate dehydrogenase, NAD-binding, putative, C-terminal; 6-phosphogluconate dehydrogenase, NAD-binding; KEGG: nar:Saro_2815 6-phosphogluconate dehydrogenase, NAD-binding YP_004555983.1 PFAM: Amidohydrolase 2; KEGG: nar:Saro_2814 amidohydrolase 2 YP_004555984.1 PFAM: Amidohydrolase 2; KEGG: ara:Arad_8733 metal-dependent hydrolase of the TIM-barrel fold family YP_004555985.1 TIGRFAM: Protocatechuate 4,5-dioxygenase, alpha subunit; KEGG: bsb:Bresu_2115 protocatechuate 4,5-dioxygenase, alpha subunit; PFAM: Extradiol ring-cleavage dioxygenase LigAB, LigA subunit YP_004555986.1 KEGG: bsb:Bresu_2114 extradiol ring-cleavage dioxygenase class III protein subunit B; PFAM: Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B YP_004555987.1 PFAM: Oxidoreductase, N-terminal; KEGG: nar:Saro_2811 oxidoreductase-like YP_004555988.1 KEGG: azl:AZL_b03690 aldehyde dehydrogenase; PFAM: Aldehyde dehydrogenase YP_004555989.1 KEGG: azl:AZL_b03670 fatty-acyl-CoA synthase; PFAM: AMP-dependent synthetase/ligase YP_004555990.1 PFAM: Crotonase, core; KEGG: mlo:mlr1841 p-hydroxycinnamoyl CoA hydratase/lyase YP_004555991.1 PFAM: Major facilitator superfamily MFS-1; KEGG: vap:Vapar_4300 major facilitator superfamily MFS_1 YP_004555992.1 PFAM: Putative cyclase; KEGG: sal:Sala_1225 putative cyclase YP_004555993.1 PFAM: Fumarylacetoacetase, C-terminal-like; KEGG: jan:Jann_2039 fumarylacetoacetate (FAA) hydrolase YP_004555994.1 PFAM: DoxX; KEGG: pna:Pnap_2930 DoxX family protein YP_004555995.1 PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: cse:Cseg_2367 TonB-dependent receptor YP_004555996.1 KEGG: rpt:Rpal_3933 transcriptional regulator, GntR family; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: HTH transcriptional regulator, GntR YP_004555997.1 PFAM: Glycosyl transferase, family 2; Type IV pilus assembly PilZ; KEGG: bja:bll6705 putative cellulose synthase catalytic subunit protein YP_004555998.1 KEGG: bja:bll6706 hypothetical protein YP_004555999.1 PFAM: Membrane protein, aromatic hydrocarbon degradation; KEGG: sjp:SJA_C2-00640 putative fatty acid/hydrocarbon transporter YP_004556000.1 PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; Transcriptional regulator, YbiH, C-terminal; KEGG: sjp:SJA_C2-01270 TetR-family transcriptional regulator YP_004556001.1 KEGG: sjp:SJA_C2-01260 hypothetical protein YP_004556002.1 PFAM: Fatty acid desaturase, type 1; KEGG: sjp:SJA_C2-03530 fatty acid desaturase family protein YP_004556003.1 KEGG: sjp:SJA_C2-04230 putative FAA hydrolase; manually curated; PFAM: Fumarylacetoacetase, C-terminal-like YP_004556004.1 KEGG: sjp:SJA_C2-01100 hypothetical protein YP_004556005.1 KEGG: sjp:SJA_C2-01090 hypothetical protein YP_004556006.1 KEGG: sal:Sala_2710 hypothetical protein YP_004556007.1 KEGG: nar:Saro_2690 hypothetical protein YP_004556008.1 TIGRFAM: 4-hydroxybenzoate 3-monooxygenase; KEGG: bsb:Bresu_2414 4-hydroxybenzoate 3-monooxygenase; PFAM: Monooxygenase, FAD-binding YP_004556009.1 KEGG: met:M446_6221 AraC family transcriptional regulator; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain YP_004556010.1 manually curated; HAMAP: UPF0246 protein yaaA; KEGG: sjp:SJA_C2-05400 hypothetical protein; PFAM: Protein of unknown function DUF328 YP_004556011.1 KEGG: swi:Swit_2806 hypothetical protein; HAMAP: Protein of unknown function DUF188; PFAM: Protein of unknown function DUF188 YP_004556012.1 KEGG: pzu:PHZ_c0285 short chain dehydrogenase; PFAM: Short-chain dehydrogenase/reductase SDR YP_004556013.1 PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: rpc:RPC_2195 TetR family transcriptional regulator YP_004556014.1 KEGG: pla:Plav_1544 cytochrome P450; PFAM: Cytochrome P450 YP_004556015.1 KEGG: bra:BRADO0596 AMP-binding domain protein; PFAM: AMP-dependent synthetase/ligase YP_004556016.1 KEGG: pla:Plav_1334 L-carnitine dehydratase/bile acid-inducible protein F; PFAM: CoA-transferase family III YP_004556017.1 KEGG: rpe:RPE_1701 acetyl-CoA acetyltransferase YP_004556018.1 PFAM: Crotonase, core; KEGG: hne:HNE_1182 enoyl-CoA hydratase/isomerase family protein YP_004556019.1 KEGG: amd:AMED_6468 LuxR family transcriptional regulator; PFAM: Transcription regulator LuxR, C-terminal; SMART: Transcription regulator LuxR, C-terminal YP_004556020.1 PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: bra:BRADO0930 TetR family transcriptional regulator YP_004556021.1 KEGG: sal:Sala_2021 cytochrome P450; PFAM: Cytochrome P450 YP_004556022.1 KEGG: pla:Plav_1165 cyclohexanone monooxygenase; PFAM: Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal YP_004556023.1 KEGG: nar:Saro_2508 AraC family transcriptional regulator YP_004556024.1 KEGG: swi:Swit_1447 alpha/beta hydrolase domain-containing protein YP_004556025.1 PFAM: Aldehyde dehydrogenase; KEGG: nar:Saro_2503 aldehyde dehydrogenase YP_004556026.1 KEGG: sjp:SJA_C1-23770 putative phosphohydrolase YP_004556027.1 PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: swi:Swit_0999 TonB-dependent receptor YP_004556028.1 KEGG: rlg:Rleg_5760 putative circadian clock protein, KaiC; SMART: ATPase, AAA+ type, core YP_004556029.1 TIGRFAM: PAS; PFAM: ATP-binding region, ATPase-like; PAS fold-3; GAF; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; Signal transduction response regulator, receiver region; KEGG: pas sensor protein; SMART: ATP-binding region, ATPase-like; GAF; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; Signal transduction response regulator, receiver region YP_004556030.1 manually curated; KEGG: pol:Bpro_5300 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_004556031.1 TIGRFAM: TonB, C-terminal; KEGG: azl:AZL_d01940 TonB protein YP_004556032.1 KEGG: ccs:CCNA_02274 EF-Hand domain-containing protein YP_004556033.1 KEGG: bur:Bcep18194_A5451 TonB-dependent siderophore receptor; TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor, plug; Secretin/TonB, short N-terminal; TonB-dependent receptor, beta-barrel YP_004556034.1 PFAM: FecR protein; KEGG: pae:PA3409 transmembrane sensor YP_004556035.1 KEGG: sml:Smlt3900 putative RNA polymerase ECF sigma factor; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2 YP_004556036.1 KEGG: sjp:SJA_C1-21220 hypothetical protein YP_004556037.1 PFAM: Initiation factor 2B related; TIGRFAM: Putative translation initiation factor, aIF-2BI/5-methylthioribose-1-phosphate isomerase; Initiation factor 2B alpha/beta/delta; HAMAP: Methylthioribose-1-phosphate isomerase; KEGG: sme:SM_b20624 methylthioribose-1-phosphate isomerase YP_004556038.1 TIGRFAM: Methylthioribose kinase; KEGG: bbt:BBta_4543 methylthioribose kinase; PFAM: Aminoglycoside phosphotransferase YP_004556039.1 PFAM: Haloacid dehalogenase-like hydrolase; TIGRFAM: 2,3-diketo-5-methylthio-1-phosphopentane phosphatase; HAD-superfamily hydrolase, subfamily IA, variant 1; HAMAP: Enolase-phosphatase E1; KEGG: mca:MCA0797 HAD superfamily hydrolase YP_004556040.1 HAMAP: Acireductone dioxygenase; KEGG: pla:Plav_1853 acireductone dioxygenase ARD; PFAM: Acireductone dioxygenase, ARD YP_004556041.1 PFAM: Class II aldolase/adducin, N-terminal; TIGRFAM: Methylthioribulose-1-phosphate dehydratase; HAMAP: Methylthioribulose-1-phosphate dehydratase; KEGG: gdj:Gdia_1415 methylthioribulose-1-phosphate dehydratase YP_004556042.1 KEGG: sjp:SJA_C2-00190 putative oxidoreductase; PFAM: Oxidoreductase, molybdopterin binding; Moybdenum cofactor oxidoreductase, dimerisation YP_004556043.1 KEGG: sjp:SJA_C2-00180 putative cytochrome c YP_004556044.1 PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; KEGG: sjp:SJA_C1-10610 TonB-dependent receptor-like protein YP_004556045.1 KEGG: pfl:PFL_1384 amine oxidase, flavin-containing; PFAM: Amine oxidase YP_004556046.1 PFAM: Endoribonuclease L-PSP; KEGG: ctt:CtCNB1_4357 endoribonuclease L-PSP YP_004556047.1 PFAM: Aldo/keto reductase; KEGG: bam:Bamb_1484 aldo/keto reductase YP_004556048.1 PFAM: Carboxylesterase, type B; KEGG: sus:Acid_2915 carboxylesterase, type B YP_004556049.1 KEGG: sjp:SJA_C1-16320 ArsR-family transcriptional regulator; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR YP_004556050.1 KEGG: sjp:SJA_C1-16310 ArsC-family protein; TIGRFAM: Arsenate reductase; PFAM: Arsenate reductase-like YP_004556051.1 PFAM: Major intrinsic protein; KEGG: sjp:SJA_C1-16300 putative MIP family permease YP_004556052.1 PFAM: Cytochrome c, class I; KEGG: sjp:SJA_C2-01840 putative cytochrome c YP_004556053.1 KEGG: sjp:SJA_C2-01830 putative amine oxidase; PFAM: Amine oxidase YP_004556054.1 PFAM: Endoribonuclease L-PSP; KEGG: sjp:SJA_C2-01820 endonuclease L-PSP (mRNA) endoribonuclease YP_004556055.1 PFAM: Amidohydrolase 1; WD40-like Beta Propeller; KEGG: sjp:SJA_C2-01810 putative amidohydrolase YP_004556056.1 KEGG: sjp:SJA_C2-01800 gamma-glutamyltranspeptidase; PFAM: Gamma-glutamyltranspeptidase YP_004556057.1 PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: sjp:SJA_C2-01790 TonB-dependent receptor-like protein YP_004556058.1 TIGRFAM: Succinic semialdehyde dehydrogenase; KEGG: cak:Caul_0580 succinic semialdehyde dehydrogenase; PFAM: Aldehyde dehydrogenase YP_004556059.1 KEGG: cak:Caul_0582 dehydrogenase E1 component; PFAM: Dehydrogenase, E1 component; Transketolase-like, pyrimidine-binding domain; Transketolase, C-terminal YP_004556060.1 KEGG: xtr:100495300 3-oxoacyl-[acyl-carrier-protein] reductase-like; PFAM: Short-chain dehydrogenase/reductase SDR YP_004556061.1 PFAM: Mandelate racemase/muconate lactonizing enzyme, N-terminal; KEGG: mno:Mnod_5664 mandelate racemase/muconate lactonizing protein YP_004556062.1 KEGG: axy:AXYL_05931 short chain dehydrogenase family protein 60; PFAM: Short-chain dehydrogenase/reductase SDR YP_004556063.1 PFAM: Crotonase, core; KEGG: rpf:Rpic12D_0367 enoyl-CoA hydratase YP_004556064.1 KEGG: cak:Caul_5261 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase YP_004556065.1 KEGG: cak:Caul_5262 acyl-CoA dehydrogenase domain-containing protein; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, central region YP_004556066.1 PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: cak:Caul_5258 short-chain dehydrogenase/reductase SDR YP_004556067.1 PFAM: DSBA oxidoreductase; KEGG: cak:Caul_5257 DsbA oxidoreductase YP_004556068.1 KEGG: vap:Vapar_5357 acetyl-CoA acetyltransferase; TIGRFAM: Thiolase YP_004556069.1 PFAM: Peptidyl-prolyl cis-trans isomerase, cyclophilin-type; KEGG: cak:Caul_3453 peptidyl-prolyl cis-trans isomerase cyclophilin type YP_004556070.1 KEGG: aav:Aave_1578 tannase and feruloyl esterase; PFAM: Tannase/feruloyl esterase YP_004556071.1 PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: swi:Swit_0478 TonB-dependent receptor YP_004556072.1 PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: avn:Avin_42260 TetR family regulatory protein YP_004556073.1 PFAM: Crotonase, core; KEGG: hne:HNE_2443 enoyl-CoA hydratase/isomerase family protein YP_004556074.1 KEGG: hne:HNE_0595 oxidoreductase, short chain dehydrogenase/reductase family protein; PFAM: Short-chain dehydrogenase/reductase SDR YP_004556075.1 PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: sjp:SJA_C2-03950 TetR-family transcriptional regulator YP_004556076.1 manually curated; KEGG: cse:Cseg_2142 enoyl-CoA hydratase/isomerase; PFAM: Crotonase, core YP_004556077.1 KEGG: cse:Cseg_0074 acyl-CoA dehydrogenase domain-containing protein; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, central region YP_004556078.1 KEGG: pzu:PHZ_c2522 hypothetical protein; TIGRFAM: Ethyl tert-butyl ether degradation EthD; PFAM: Ethyl tert-butyl ether degradation EthD YP_004556079.1 KEGG: htu:Htur_3816 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR YP_004556080.1 KEGG: sjp:SJA_C2-03790 hypothetical protein YP_004556081.1 PFAM: Crotonase, core; KEGG: sjp:SJA_C2-03910 enoyl-CoA hydratase/isomerase family protein YP_004556082.1 KEGG: swi:Swit_1006 acetyl-CoA acetyltransferase; TIGRFAM: Thiolase YP_004556083.1 TIGRFAM: Acetoacetyl-CoA synthase; KEGG: bur:Bcep18194_B1209 acetoacetyl-CoA synthetase; PFAM: AMP-dependent synthetase/ligase YP_004556084.1 KEGG: sjp:SJA_C2-04230 putative FAA hydrolase; PFAM: Fumarylacetoacetase, C-terminal-like YP_004556085.1 PFAM: Crotonase, core; KEGG: pla:Plav_0566 enoyl-CoA hydratase YP_004556086.1 KEGG: sal:Sala_1242 L-carnitine dehydratase/bile acid-inducible protein F; PFAM: CoA-transferase family III YP_004556087.1 PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: swi:Swit_1443 TonB-dependent receptor YP_004556088.1 PFAM: Rieske [2Fe-2S] iron-sulphur domain; KEGG: sjp:SJA_C2-04080 putative dioxygenase YP_004556089.1 KEGG: sjp:SJA_C2-04070 hypothetical protein YP_004556090.1 KEGG: sjp:SJA_C2-04130 SDR-family protein; PFAM: Short-chain dehydrogenase/reductase SDR YP_004556091.1 PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: sjp:SJA_C2-03880 TetR-family transcriptional regulator YP_004556092.1 KEGG: sjp:SJA_C2-04220 BphC-like dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase YP_004556093.1 PFAM: Protein of unknown function DUF1486; KEGG: sjp:SJA_C2-03990 hypothetical protein YP_004556094.1 KEGG: sjp:SJA_C2-04180 putative aromatic ring hydroxylating dioxygenase beta subunit YP_004556095.1 KEGG: sjp:SJA_C2-04190 putative FAD-monooxygenase; PFAM: Monooxygenase, FAD-binding YP_004556096.1 KEGG: rhi:NGR_b04260 hypothetical protein YP_004556097.1 PFAM: Nitroreductase-like; KEGG: dat:HRM2_32980 putative nitroreductase YP_004556098.1 PFAM: Helix-turn-helix, HxlR type; KEGG: rpc:RPC_2243 putative transcriptional regulator YP_004556099.1 KEGG: mno:Mnod_6637 NAD(P)H dehydrogenase (quinone); HAMAP: FMN-dependent NADH-azoreductase; PFAM: Flavodoxin-like fold YP_004556100.1 TIGRFAM: Para-aminobenzoate synthase, component I; KEGG: nar:Saro_0445 para-aminobenzoate synthase, component I; PFAM: Chorismate binding, C-terminal YP_004556101.1 KEGG: sjp:SJA_C2-01220 hypothetical protein YP_004556102.1 PFAM: Glutathione S-transferase, N-terminal; Glutathione S-transferase, C-terminal; KEGG: sjp:SJA_C2-04780 glutathione S-transferase YP_004556103.1 PFAM: TonB-dependent receptor, plug; KEGG: sjp:SJA_C2-01170 TonB-dependent receptor-like protein YP_004556104.1 PFAM: Phospholipase/carboxylesterase; KEGG: sjp:SJA_C2-04810 putative esterase YP_004556105.1 KEGG: sjp:SJA_C2-04820 maleylacetate reductase LinF; PFAM: Alcohol dehydrogenase, iron-type YP_004556106.1 TIGRFAM: Formyltetrahydrofolate deformylase; KEGG: sjp:SJA_C2-01160 formyltetrahydrofolate deformylase; PFAM: Formyl transferase, N-terminal; Amino acid-binding ACT YP_004556107.1 HAMAP: Tetrahydrofolate dehydrogenase/cyclohydrolase; KEGG: nar:Saro_3791 methenyltetrahydrofolate cyclohydrolase; PFAM: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain YP_004556108.1 PFAM: HTH transcriptional regulator, LysR; LysR, substrate-binding; KEGG: sjp:SJA_C2-04840 LysR-family transcriptional regulator YP_004556109.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sjp:SJA_C2-04850 2,6-dichloro-p-hydroquinone 1,2-dioxygenase LinEb YP_004556110.1 PFAM: Cation/H+ exchanger; KEGG: sjp:SJA_C2-04870 putative Na+/H+ antiporter YP_004556111.1 KEGG: sjp:SJA_C2-04880 putative hydrolase; SMART: Beta-lactamase-like YP_004556112.1 PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: cse:Cseg_2367 TonB-dependent receptor YP_004556113.1 PFAM: Glutathione S-transferase, C-terminal; Glutathione S-transferase, N-terminal; KEGG: cps:CPS_1668 glutathione S-transferase family protein YP_004556114.1 KEGG: sjp:SJA_C2-04890 putative glutathione S-transferase; PFAM: Glutathione S-transferase, C-terminal YP_004556115.1 PFAM: HTH transcriptional regulator, LysR; LysR, substrate-binding; KEGG: sjp:SJA_C2-01190 LysR-family transcriptional regulator YP_004556116.1 PFAM: Methylenetetrahydrofolate reductase; KEGG: sjp:SJA_C2-01200 5,10-methylenetetrahydrofolate reductase YP_004556117.1 PFAM: Glycine cleavage T-protein, N-terminal; KEGG: sjp:SJA_C2-01210 putative aminomethyltransferase YP_004556120.1 KEGG: swi:Swit_1446 response regulator receiver protein; PFAM: Transcription regulator LuxR, C-terminal; SMART: Transcription regulator LuxR, C-terminal YP_004556121.1 PFAM: Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal; KEGG: ppf:Pput_3118 fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein YP_004556122.1 PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: sjp:SJA_C2-05850 TetR-family transcriptional regulator YP_004556123.1 KEGG: cak:Caul_5088 acetyl-CoA acetyltransferase; TIGRFAM: Thiolase YP_004556124.1 PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; KEGG: sjp:SJA_C2-00810 TonB-dependent receptor-like protein YP_004556125.1 KEGG: sjp:SJA_C2-00800 putative transmembrane protein YP_004556126.1 KEGG: sjp:SJA_C2-00790 signal transduction histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; Signal transduction response regulator, receiver region; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; Signal transduction response regulator, receiver region YP_004556127.1 KEGG: sjp:SJA_C2-01710 Xre-family transcriptional regulator; PFAM: Helix-turn-helix type 3; Type IV pilus assembly PilZ; SMART: Helix-turn-helix type 3 YP_004556128.1 PFAM: YCII-related; KEGG: sjp:SJA_C1-09560 YCII-related protein YP_004556129.1 KEGG: sjp:SJA_C1-09550 AraC-family transcriptional regulator; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain YP_004556130.1 KEGG: sjp:SJA_C1-09540 putative intradiol ring-cleavage dioxygenase; PFAM: Intradiol ring-cleavage dioxygenase, C-terminal; Catechol dioxygenase, N-terminal YP_004556131.1 PFAM: YCII-related; KEGG: reu:Reut_A1484 YCII-related YP_004556132.1 PFAM: Glutathione S-transferase, N-terminal; Glutathione S-transferase, C-terminal; KEGG: bpt:Bpet1519 putative glutathione transferase YP_004556133.1 PFAM: Glutathione S-transferase, N-terminal; Glutathione S-transferase, C-terminal; KEGG: reu:Reut_A1487 glutathione S-transferase YP_004556134.1 KEGG: xau:Xaut_0299 hypothetical protein; HAMAP: NADH dehydrogenase/NAD(P)H nitroreductase rutE; PFAM: Nitroreductase-like YP_004556135.1 PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: swi:Swit_4894 TonB-dependent receptor YP_004556136.1 PFAM: Nitroreductase-like; KEGG: rpd:RPD_3154 nitroreductase YP_004556137.1 PFAM: Peptidase M20; Peptidase M20, dimerisation; KEGG: nar:Saro_3309 hypothetical protein YP_004556138.1 KEGG: hba:Hbal_2560 betaine-aldehyde dehydrogenase; PFAM: Aldehyde dehydrogenase YP_004556139.1 PFAM: MmgE/PrpD; KEGG: rxy:Rxyl_0368 MmgE/PrpD YP_004556140.1 PFAM: MmgE/PrpD; KEGG: aco:Amico_1705 MmgE/PrpD family protein YP_004556141.1 KEGG: rsk:RSKD131_4248 tricarballylate dehydrogenase; PFAM: Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal YP_004556142.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: alv:Alvin_2445 LysR family transcriptional regulator YP_004556143.1 KEGG: bld:BLi01398 YkfB; PFAM: Mandelate racemase/muconate lactonizing enzyme, C-terminal; Mandelate racemase/muconate lactonizing enzyme, N-terminal YP_004556144.1 KEGG: sjp:SJA_C1-23740 choline dehydrogenase; PFAM: Glucose-methanol-choline oxidoreductase, N-terminal; Glucose-methanol-choline oxidoreductase, C-terminal YP_004556145.1 PFAM: Strictosidine synthase, conserved region; KEGG: bbr:BB0722 hypothetical protein YP_004556146.1 KEGG: mav:MAV_1897 betaine-aldehyde dehydrogenase; PFAM: Aldehyde dehydrogenase YP_004556147.1 PFAM: Putative cyclase; KEGG: cpc:Cpar_2028 cyclase family protein YP_004556148.1 PFAM: Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region; KEGG: pna:Pnap_0619 putative potassium transport flavoprotein YP_004556149.1 KEGG: bsb:Bresu_2050 hypothetical protein YP_004556150.1 TIGRFAM: Succinic semialdehyde dehydrogenase; KEGG: swi:Swit_4306 succinate semialdehyde dehydrogenase; PFAM: Aldehyde dehydrogenase YP_004556151.1 PFAM: Taurine catabolism dioxygenase TauD/TfdA; KEGG: bbt:BBta_6965 alpha-ketoglutarate-dependent 2,4-dichlorophenoxyacetate dioxygenase YP_004556152.1 KEGG: axy:AXYL_05508 thiamine pyrophosphate enzyme, C-terminal TPP binding domain-containing protein 10; PFAM: Thiamine pyrophosphate enzyme, C-terminal TPP-binding; Thiamine pyrophosphate enzyme, central region; Thiamine pyrophosphate enzyme, N-terminal TPP binding region YP_004556153.1 KEGG: bbr:BB2701 putative dehydrogenase; PFAM: Short-chain dehydrogenase/reductase SDR YP_004556154.1 PFAM: Carboxymuconolactone decarboxylase; KEGG: pfo:Pfl01_3235 4-carboxymuconolactone decarboxylase YP_004556155.1 KEGG: bxe:Bxe_B0968 LacI family transcription regulator; PFAM: Periplasmic binding protein/LacI transcriptional regulator; HTH transcriptional regulator, LacI; SMART: HTH transcriptional regulator, LacI YP_004556156.1 KEGG: pol:Bpro_3857 hypothetical protein YP_004556157.1 KEGG: mpt:Mpe_A0189 2-dehydro-3-deoxyglucarate aldolase; PFAM: HpcH/HpaI aldolase YP_004556158.1 KEGG: pde:Pden_3486 hypothetical protein YP_004556159.1 PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; KEGG: cak:Caul_3783 TonB-dependent receptor plug YP_004556160.1 KEGG: sjp:SJA_C1-05090 hypothetical protein YP_004556161.1 KEGG: sjp:SJA_C1-05120 ferredoxin YP_004556162.1 PFAM: Protein of unknown function DUF1622; KEGG: sjp:SJA_C1-05130 hypothetical protein YP_004556163.1 KEGG: sjp:SJA_C1-05140 cytochrome c family protein YP_004556164.1 KEGG: sjp:SJA_C1-05150 hypothetical protein YP_004556165.1 KEGG: sjp:SJA_C1-05160 putative flavodoxin reductase; PFAM: Oxidoreductase FAD-binding region; Oxidoreductase FAD/NAD(P)-binding; Ferredoxin YP_004556166.1 KEGG: sjp:SJA_C1-05170 hypothetical protein YP_004556167.1 KEGG: sjp:SJA_C1-05180 hypothetical protein YP_004556168.1 KEGG: sjp:SJA_C1-05190 MerR-family transcriptional regulator; PFAM: Transcription regulator MerR, DNA binding; HTH transcriptional regulator, MerR; SMART: HTH transcriptional regulator, MerR YP_004556169.1 KEGG: sjp:SJA_C1-05200 hypothetical protein YP_004556170.1 manually curated; KEGG: sjp:SJA_C1-05210 hypothetical protein YP_004556171.1 KEGG: sjp:SJA_C1-05220 hypothetical protein YP_004556172.1 PFAM: Outer membrane efflux protein; KEGG: sjp:SJA_C1-05230 cation resistance protein CzcC YP_004556173.1 TIGRFAM: Secretion protein HlyD; KEGG: sjp:SJA_C1-05240 copper efflux system membrane protein CusB YP_004556174.1 KEGG: sjp:SJA_C1-05250 copper/silver efflux system membrane protein CusA/CzcA; TIGRFAM: Heavy metal efflux pump CzcA; PFAM: Acriflavin resistance protein YP_004556175.1 KEGG: sjp:SJA_C1-05260 copper efflux system periplasmic protein CusF YP_004556176.1 manually curated; KEGG: sjp:SJA_C1-05270 hypothetical protein YP_004556177.1 PFAM: GCN5-related N-acetyltransferase; KEGG: sjp:SJA_C1-05280 putative acetyltransferase YP_004556178.1 KEGG: sjp:SJA_C1-05290 resolvase; PFAM: Resolvase, N-terminal; SMART: Resolvase, N-terminal YP_004556179.1 PFAM: Transposase, Tn3; KEGG: sjp:SJA_C1-05300 Tn3-family transposase YP_004556180.1 KEGG: sjp:SJA_C1-05310 phosphomannomutase; TIGRFAM: HAD-superfamily hydrolase, subfamily IIB; PFAM: HAD superfamily hydrolase-like, type 3 YP_004556181.1 TIGRFAM: ATPase, P-type, heavy metal translocating; ATPase, P-type, heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; KEGG: sjp:SJA_C1-05320 cation transport ATPase; PFAM: ATPase, P-type, ATPase-associated region; Haloacid dehalogenase-like hydrolase YP_004556182.1 PFAM: Cation efflux protein; KEGG: sjp:SJA_C1-05330 CDF-family cation efflux system protein YP_004556183.1 KEGG: sjp:SJA_C1-05340 ZIP-family zinc transporter YP_004556184.1 KEGG: sjp:SJA_C1-05350 hypothetical protein YP_004556185.1 KEGG: sjp:SJA_C1-05360 hypothetical protein YP_004556186.1 PFAM: Polyketide cyclase/dehydrase; KEGG: sjp:SJA_C1-05370 hypothetical protein YP_004556187.1 KEGG: sjp:SJA_C1-05380 copper/silver efflux system membrane protein CusA/CzcA; TIGRFAM: Heavy metal efflux pump CzcA; PFAM: Acriflavin resistance protein YP_004556188.1 KEGG: sjp:SJA_C1-05390 metal ion efflux membrane fusion protein family; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD YP_004556189.1 PFAM: Outer membrane efflux protein; KEGG: sjp:SJA_C1-05400 cation resistance protein CzcC YP_004556190.1 KEGG: sjp:SJA_C1-05410 hypothetical protein YP_004556191.1 PFAM: Iron permease FTR1; KEGG: sjp:SJA_C1-05420 high-affinity iron transporter YP_004556192.1 PFAM: Cation efflux protein; KEGG: sjp:SJA_C1-05430 CDF-family cation efflux system protein YP_004556193.1 KEGG: sjp:SJA_C1-05440 MerR-family transcriptional regulator; PFAM: Transcription regulator MerR, DNA binding; HTH transcriptional regulator, MerR; SMART: HTH transcriptional regulator, MerR YP_004556194.1 SMART: PDZ/DHR/GLGF; KEGG: sjp:SJA_C1-05450 hypothetical protein YP_004556195.1 PFAM: Transposase, Tn3; KEGG: oan:Oant_4776 transposase Tn3 family protein YP_004556196.1 PFAM: Resolvase, N-terminal; Helix-turn-helix, Fis-type; KEGG: oan:Oant_4668 resolvase domain-containing protein YP_004556197.1 KEGG: swi:Swit_5094 hypothetical protein YP_004556198.1 PFAM: Integrase, N-terminal SAM-like, phage; KEGG: sjp:SJA_C1-05490 putative integrase YP_004556199.1 manually curated; KEGG: sjp:SJA_P1-00070 hypothetical protein YP_004556200.1 KEGG: sjp:SJA_P1-00060 hypothetical protein YP_004556201.1 PFAM: RES; KEGG: sjp:SJA_P1-00050 hypothetical protein YP_004556202.1 KEGG: sjp:SJA_P1-00040 hypothetical protein YP_004556203.1 TIGRFAM: ParB-like partition protein; PFAM: ParB-like nuclease; KEGG: sjp:SJA_P1-00030 chromosome partitioning protein ParB; SMART: ParB-like nuclease YP_004556204.1 PFAM: Cobyrinic acid a,c-diamide synthase; HTH transcriptional regulator, MerR; KEGG: sjp:SJA_P1-00020 chromosome partitioning protein ParA YP_004556205.1 PFAM: Initiator Rep protein; KEGG: sjp:SJA_P1-00010 replication initiator RepA YP_004556206.1 PFAM: Primosome PriB/single-strand DNA-binding; KEGG: sjp:SJA_P1-02230 single-stranded DNA-binding protein YP_004556207.1 KEGG: sjp:SJA_P1-02220 hypothetical protein YP_004556208.1 KEGG: sjp:SJA_P1-02210 putative methylase/helicase YP_004556209.1 TIGRFAM: ParB-like partition protein; PFAM: ParB-like nuclease; KEGG: sjp:SJA_P1-02200 ParB-like protein; SMART: ParB-like nuclease YP_004556210.1 PFAM: Domain of unknown function DUF1738; KEGG: sjp:SJA_P1-02190 antirestriction protein ArdC YP_004556211.1 SMART: HTH transcriptional regulator, ArsR; KEGG: sjp:SJA_C1-04230 ArsR-family transcriptional regulator YP_004556212.1 KEGG: sjp:SJA_C1-04240 arsenate reductase; PFAM: Protein-tyrosine phosphatase, low molecular weight; SMART: Protein-tyrosine phosphatase, low molecular weight YP_004556213.1 TIGRFAM: Arsenate reductase; KEGG: sjp:SJA_C1-04250 arsenate reductase; PFAM: Arsenate reductase-like YP_004556214.1 KEGG: sjp:SJA_C1-04260 arsenite transporter; TIGRFAM: Arsenical-resistance protein ACR3; PFAM: Bile acid:sodium symporter YP_004556215.1 PFAM: GCN5-related N-acetyltransferase; KEGG: sjp:SJA_C1-04270 putative acetyltransferase YP_004556216.1 manually curated; TIGRFAM: Arsenate resistance ArsH; KEGG: sjp:SJA_C1-04280 arylsulfatase-family protein; PFAM: NADPH-dependent FMN reductase YP_004556217.1 PFAM: Protein of unknown function DUF2493; KEGG: sjp:SJA_C1-04290 hypothetical protein YP_004556218.1 KEGG: sjp:SJA_C1-04300 hypothetical protein YP_004556219.1 KEGG: sjp:SJA_C1-04320 single-stranded DNA-binding protein; TIGRFAM: Single-strand DNA-binding; PFAM: Primosome PriB/single-strand DNA-binding YP_004556220.1 KEGG: sjp:SJA_C1-04330 hypothetical protein YP_004556221.1 KEGG: sjp:SJA_C1-04340 hypothetical protein YP_004556222.1 KEGG: sjp:SJA_C1-04350 hypothetical protein YP_004556223.1 KEGG: sjp:SJA_C1-04360 hypothetical protein YP_004556224.1 KEGG: sjp:SJA_C1-04370 hypothetical protein YP_004556225.1 KEGG: sjp:SJA_C1-04380 hypothetical protein YP_004556226.1 PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: sjp:SJA_C1-04390 ParA-like protein YP_004556227.1 TIGRFAM: ParB-like partition protein; PFAM: KorB; ParB-like nuclease; KEGG: sjp:SJA_C1-04400 ParB-like protein; SMART: ParB-like nuclease YP_004556228.1 PFAM: Protein of unknown function DUF1778; KEGG: sjp:SJA_C1-04410 putative mobilization protein YP_004556229.1 PFAM: Endonuclease relaxase, MobA/VirD2; KEGG: sjp:SJA_C1-04420 type IV secretory pathway VirD2 component YP_004556230.1 KEGG: sjp:SJA_C1-04430 hypothetical protein YP_004556231.1 PFAM: Protein of unknown function DUF1814; KEGG: sjp:SJA_C1-04440 hypothetical protein YP_004556232.1 KEGG: sjp:SJA_C1-04470 hypothetical protein YP_004556233.1 TIGRFAM: Addiction module antidote protein, HigA; PFAM: Helix-turn-helix type 3; KEGG: oca:OCAR_4160 XRE family plasmid maintenance system antidote protein; SMART: Helix-turn-helix type 3 YP_004556234.1 KEGG: oca:OCAR_4159 restriction methylase YP_004556235.1 PFAM: Restriction endonuclease, type II, BsuBI/PstI, C-terminal; KEGG: oca:OCAR_4158 BsuBIPstI restriction endonuclease domain protein YP_004556236.1 KEGG: rpf:Rpic12D_3111 hypothetical protein YP_004556237.1 KEGG: sjp:SJA_C1-04560 DNA transfer TraO-like protein YP_004556238.1 PFAM: TRAG protein; KEGG: sjp:SJA_C1-04570 type IV secretory pathway VirD4 component YP_004556239.1 TIGRFAM: ATPase, P-type DNA transfer, VirB11; PFAM: Type II secretion system protein E; KEGG: sjp:SJA_C1-04580 type IV secretory pathway VirB11 component; SMART: ATPase, AAA+ type, core YP_004556240.1 PFAM: Bacterial conjugation TrbI-like protein; KEGG: sjp:SJA_C1-04590 type IV secretory pathway VirB10 component YP_004556241.1 KEGG: sjp:SJA_C1-04600 type IV secretory pathway VirB9 component; TIGRFAM: P-type conjugative transfer protein VirB9; PFAM: Conjugal transfer, TrbG/VirB9/CagX YP_004556242.1 PFAM: VirB8; KEGG: sjp:SJA_C1-04610 type IV secretory pathway VirB8 component YP_004556243.1 PFAM: Conjugal transfer, TrbL/VirB6; KEGG: sjp:SJA_C1-04630 type IV secretory pathway VirB6 component YP_004556244.1 PFAM: Type IV secretion system; KEGG: sjp:SJA_C1-04640 type IV secretory pathway VirB5 component YP_004556245.1 KEGG: sjp:SJA_C1-04650 type IV secretory pathway VirB4 component; TIGRFAM: CagE, TrbE, VirB component of type IV transporter system; PFAM: CagE, TrbE, VirB component of type IV transporter system, conserved region YP_004556246.1 PFAM: Type IV secretory pathway, VirB3-like; KEGG: sjp:SJA_C1-04660 type IV secretory pathway VirB3 component YP_004556247.1 PFAM: Conjugal transfer,TrbC; KEGG: sjp:SJA_C1-04670 type IV secretory pathway VirB2 component YP_004556248.1 PFAM: Lytic transglycosylase-like, catalytic; KEGG: sjp:SJA_C1-04680 type IV secretion system protein VirB1 YP_004556249.1 KEGG: sjp:SJA_C1-04690 hypothetical protein YP_004556250.1 PFAM: Phytanoyl-CoA dioxygenase; KEGG: sjp:SJA_C1-04700 hypothetical protein YP_004556251.1 PFAM: Autoinducer synthesis protein; KEGG: sjp:SJA_C1-04710 N-acyl-L-homoserine lactone synthetase YP_004556252.1 manually curated; PFAM: Autoinducer-binding; Transcription regulator LuxR, C-terminal; KEGG: sjp:SJA_C1-04720 LuxR-family transcriptional regulator; SMART: Transcription regulator LuxR, C-terminal YP_004556253.1 KEGG: sjp:SJA_C1-04730 LuxR-family transcriptional regulator; PFAM: Autoinducer-binding; Transcription regulator LuxR, C-terminal; SMART: Transcription regulator LuxR, C-terminal YP_004556254.1 KEGG: sjp:SJA_C1-04740 hypothetical protein YP_004556255.1 PFAM: Isoprenylcysteine carboxyl methyltransferase; KEGG: sjp:SJA_C1-04750 putative protein-S-isoprenylcysteine methyltransferase YP_004556256.1 KEGG: sjp:SJA_C1-04760 hypothetical protein YP_004556257.1 PFAM: RNA-metabolising metallo-beta-lactamase; KEGG: sjp:SJA_C1-04770 putative exonuclease YP_004556258.1 PFAM: Pyrimidine nucleoside phosphorylase, C-terminal; Glycosyl transferase, family 3; TIGRFAM: Thymidine phosphorylase related; HAMAP: Thymidine phosphorylase related; KEGG: sjp:SJA_C1-04780 putative thymidine phosphorylase YP_004556259.1 KEGG: sjp:SJA_C1-04790 ribose-phosphate pyrophosphokinase; TIGRFAM: Phosphoribosyl pyrophosphokinase YP_004556260.1 KEGG: sjp:SJA_C1-04810 CheY-like response regulator; PFAM: Signal transduction response regulator, receiver region; Transcription regulator LuxR, C-terminal; SMART: Signal transduction response regulator, receiver region; Transcription regulator LuxR, C-terminal YP_004556261.1 TIGRFAM: Cu(I)-responsive transcriptional regulator; PFAM: Transcription regulator MerR, DNA binding; HTH transcriptional regulator, MerR; KEGG: sjp:SJA_C1-04820 MerR-family transcriptional regulator; SMART: HTH transcriptional regulator, MerR YP_004556262.1 SMART: TRASH; TIGRFAM: ATPase, P type, cation/copper-transporter; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; ATPase, P-type, heavy metal translocating; KEGG: sjp:SJA_C1-04830 cation transport ATPase; PFAM: ATPase, P-type, ATPase-associated region; YHS; Haloacid dehalogenase-like hydrolase YP_004556263.1 PFAM: Copper resistance D; KEGG: sjp:SJA_C1-04850 copper resistance protein CopD YP_004556264.1 PFAM: Copper resistance protein CopC, core; KEGG: sjp:SJA_C1-04860 copper resistance protein CopC YP_004556265.1 KEGG: sjp:SJA_C1-04870 hypothetical protein YP_004556266.1 KEGG: sjp:SJA_C1-04880 hypothetical protein YP_004556267.1 KEGG: sjp:SJA_C1-04890 ECF-type sigma factor; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2 YP_004556268.1 KEGG: sjp:SJA_C1-04900 putative multicopper oxidase; TIGRFAM: Copper-resistance protein CopA; Twin-arginine translocation pathway, signal sequence; PFAM: Multicopper oxidase, type 3; Multicopper oxidase, type 2; Twin-arginine translocation pathway, signal sequence, subgroup; Multicopper oxidase, type 1 YP_004556269.1 PFAM: Copper resistance B precursor; KEGG: sjp:SJA_C1-04910 copper resistance protein CopB YP_004556270.1 PFAM: Protein of unknown function DUF305; KEGG: sjp:SJA_C1-04920 hypothetical protein YP_004556271.1 TIGRFAM: PAS; PFAM: ATP-binding region, ATPase-like; PAS fold; PAS fold-4; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; KEGG: sjp:SJA_C1-04930 signal transduction histidine kinase; SMART: ATP-binding region, ATPase-like; PAS; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region YP_004556272.1 KEGG: sjp:SJA_C1-04940 response regulator UhpA; PFAM: Signal transduction response regulator, receiver region; Transcription regulator LuxR, C-terminal; SMART: Signal transduction response regulator, receiver region; Transcription regulator LuxR, C-terminal YP_004556273.1 KEGG: sjp:SJA_C1-04950 CheY-like response regulator; PFAM: Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region YP_004556274.1 KEGG: sjp:SJA_C1-05010 StbE/RelE-family protein; TIGRFAM: Addiction module toxin, RelE/StbE; PFAM: Plasmid stabilisation system YP_004556275.1 KEGG: sjp:SJA_C1-05020 RelB antitoxin; TIGRFAM: RelB antitoxin; PFAM: RelB antitoxin YP_004556276.1 PFAM: Protein of unknown function DUF411; KEGG: sjp:SJA_C1-05030 putative metal-binding protein YP_004556277.1 PFAM: Major facilitator superfamily MFS-1; KEGG: sjp:SJA_C1-05040 putative MFS permease YP_004556278.1 PFAM: Copper resistance B precursor; KEGG: sjp:SJA_C1-05050 copper resistance protein CopB YP_004556279.1 KEGG: sjp:SJA_C1-05060 copper resistance protein CopA; TIGRFAM: Copper-resistance protein CopA; Twin-arginine translocation pathway, signal sequence; PFAM: Multicopper oxidase, type 3; Multicopper oxidase, type 2; Multicopper oxidase, type 1 YP_004556280.1 PFAM: Alcohol dehydrogenase GroES-like; Alcohol dehydrogenase, zinc-binding; KEGG: sjp:SJA_C1-05070 Zn-dependent alcohol dehydrogenase YP_004556281.1 PFAM: Aldehyde dehydrogenase; KEGG: sjp:SJA_C1-05080 NAD-dependent aldehyde dehydrogenase