-- dump date   	20140620_070554
-- class       	Genbank::CDS
-- table       	cds_note
-- id	note
YP_005712196.1	SMART: Chromosomal replication initiator, DnaA C-terminal; ATPase, AAA+ type, core; TIGRFAM: Chromosomal replication control, initiator DnaA; KEGG: smd:Smed_0002 chromosomal replication initiation protein; HAMAP: Chromosomal replication control, initiator DnaA; PFAM: Chromosomal replication control, initiator (DnaA)/regulator (Hda); Chromosomal replication initiator, DnaA C-terminal
YP_005712197.1	PFAM: YCII-related; KEGG: smd:Smed_0003 DGPFAETKE family protein
YP_005712198.1	KEGG: smd:Smed_0004 RNA polymerase ECF-subfamily sigma factor; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2
YP_005712199.1	PFAM: Activator of Hsp90 ATPase homologue 1-like; KEGG: smd:Smed_0005 activator of HSP90 ATPase 1 family protein
YP_005712200.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: smd:Smed_0006 glyoxalase/bleomycin resistance protein/dioxygenase
YP_005712201.1	TIGRFAM: Putative oxygen-independent coproporphyrinogen III oxidase; PFAM: HemN, C-terminal; Radical SAM; KEGG: smd:Smed_0007 coproporphyrinogen III oxidase; SMART: Elongator protein 3/MiaB/NifB
YP_005712202.1	HAMAP: Nucleoside-triphosphatase; KEGG: smd:Smed_0008 putative deoxyribonucleotide triphosphate pyrophosphatase; PFAM: Ham1-like protein
YP_005712203.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: smd:Smed_0009 glyoxalase/bleomycin resistance protein/dioxygenase
YP_005712204.1	PFAM: Exoribonuclease, phosphorolytic domain 1; Exoribonuclease, phosphorolytic domain 2; TIGRFAM: Ribonuclease phosphorolytic, bacterial-type; HAMAP: Ribonuclease phosphorolytic, bacterial-type; KEGG: smd:Smed_0010 ribonuclease PH
YP_005712205.1	TIGRFAM: Winged helix-turn-helix transcription repressor, HrcA; HAMAP: Winged helix-turn-helix transcription repressor, HrcA; KEGG: smd:Smed_0011 heat-inducible transcription repressor; PFAM: Winged helix-turn-helix transcription repressor, HrcA, C-terminal
YP_005712206.1	KEGG: smd:Smed_0012 heat shock protein GrpE; HAMAP: GrpE nucleotide exchange factor; PFAM: GrpE nucleotide exchange factor
YP_005712207.1	KEGG: smd:Smed_0013 PTS IIA-like nitrogen-regulatory protein PtsN; TIGRFAM: Phosphotransferase system, IIA-like nitrogen-regulatory protein PtsN; PFAM: Phosphotransferase system, phosphoenolpyruvate-dependent sugar EIIA 2
YP_005712208.1	KEGG: smd:Smed_0014 sigma 54 modulation protein/ribosomal protein S30EA; TIGRFAM: Ribosomal protein S30Ae/sigma 54 modulation protein; PFAM: Ribosomal protein S30Ae/sigma 54 modulation protein
YP_005712209.1	KEGG: smd:Smed_0015 RNA polymerase factor sigma-54; TIGRFAM: RNA polymerase sigma factor 54; PFAM: RNA polymerase sigma factor 54, core-binding; RNA polymerase sigma factor 54; RNA polymerase sigma factor 54, DNA-binding
YP_005712210.1	PFAM: ABC transporter-like; KEGG: smd:Smed_0016 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_005712211.1	PFAM: Organic solvent tolerance-like, N-terminal; KEGG: smd:Smed_0017 OstA family protein
YP_005712212.1	PFAM: Lipopolysccharide assembly, LptC-related; KEGG: smd:Smed_0018 hypothetical protein
YP_005712213.1	KEGG: smd:Smed_0020 signal peptide peptidase SppA, 36K type; TIGRFAM: Peptidase S49, SppA; PFAM: Peptidase S49
YP_005712214.1	SMART: Histone-like bacterial DNA-binding protein; TIGRFAM: Integration host factor, beta subunit; KEGG: smd:Smed_0021 integration host factor subunit beta; HAMAP: Integration host factor, beta subunit; PFAM: Histone-like bacterial DNA-binding protein
YP_005712215.1	KEGG: smd:Smed_0022 hypothetical protein
YP_005712216.1	PFAM: Carbon monoxide dehydrogenase subunit G; KEGG: smd:Smed_0023 carbon monoxide dehydrogenase subunit G
YP_005712217.1	KEGG: smd:Smed_0024 hypothetical protein
YP_005712218.1	KEGG: smd:Smed_0025 tRNA/rRNA methyltransferase (SpoU); PFAM: tRNA/rRNA methyltransferase, SpoU; RNA 2-O ribose methyltransferase, substrate binding; SMART: RNA 2-O ribose methyltransferase, substrate binding
YP_005712219.1	KEGG: smd:Smed_0026 lipoprotein signal peptidase; TIGRFAM: Peptidase A8, signal peptidase II; PFAM: Peptidase A8, signal peptidase II
YP_005712220.1	KEGG: smd:Smed_0027 integral membrane sensor hybrid histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; PAS fold; Signal transduction response regulator, receiver domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; Signal transduction response regulator, receiver domain
YP_005712221.1	KEGG: smd:Smed_0028 hypothetical protein
YP_005712222.1	KEGG: smd:Smed_0029 malic enzyme; PFAM: Malic enzyme, NAD-binding; Malic enzyme, N-terminal; Phosphate acetyl/butaryl transferase; SMART: Malic enzyme, NAD-binding
YP_005712223.1	SMART: DNA mismatch repair protein MutS, C-terminal; DNA mismatch repair protein MutS, core; TIGRFAM: DNA mismatch repair protein MutS, type 1; KEGG: smd:Smed_0030 DNA mismatch repair protein MutS; HAMAP: DNA mismatch repair protein MutS, type 1; PFAM: DNA mismatch repair protein MutS, C-terminal; DNA mismatch repair protein MutS, core; DNA mismatch repair protein MutS-like, N-terminal; DNA mismatch repair protein MutS, connector; DNA mismatch repair protein MutS, clamp
YP_005712224.1	KEGG: smd:Smed_0031 PII uridylyl-transferase; PFAM: PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase; Nucleotidyl transferase domain; Metal-dependent phosphohydrolase, HD subdomain; Amino acid-binding ACT; TIGRFAM: Protein-PII uridylyltransferase; HAMAP: Protein-PII uridylyltransferase; SMART: Metal-dependent phosphohydrolase, HD domain
YP_005712225.1	KEGG: smd:Smed_0032 integral membrane protein MviN; TIGRFAM: Flagellin assembly, membrane protein MviN; PFAM: Flagellin assembly, membrane protein MviN
YP_005712226.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: rhi:NGR_c00340 predicted glyoxalase/bleomycin resistance protein/dioxygenase
YP_005712227.1	TIGRFAM: Tryptophanyl-tRNA synthetase, class Ib; KEGG: smd:Smed_0034 tryptophanyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class Ib
YP_005712228.1	KEGG: smd:Smed_0035 UspA domain-containing protein; manually curated; PFAM: UspA
YP_005712229.1	KEGG: smd:Smed_0036 scaffold protein Nfu/NifU; PFAM: NIF system FeS cluster assembly, NifU-like scaffold, N-terminal; NIF system FeS cluster assembly, NifU, C-terminal; SMART: NIF system FeS cluster assembly, NifU-like scaffold, N-terminal
YP_005712230.1	KEGG: smd:Smed_0037 peptidase M22 glycoprotease; TIGRFAM: Conserved hypothetical protein CHP03725, YeaZ; PFAM: Peptidase M22, glycoprotease
YP_005712231.1	PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: smd:Smed_0038 GCN5-related N-acetyltransferase
YP_005712232.1	KEGG: smd:Smed_0039 phospholipid/glycerol acyltransferase; PFAM: Phospholipid/glycerol acyltransferase; SMART: Phospholipid/glycerol acyltransferase
YP_005712233.1	SMART: Elongator protein 3/MiaB/NifB; TIGRFAM: Methylthiotransferase; tRNA-i(6)A37 modification enzyme MiaB; KEGG: smd:Smed_0040 (dimethylallyl)adenosine tRNA methylthiotransferase; HAMAP: tRNA-i(6)A37 modification enzyme MiaB; PFAM: Methylthiotransferase, N-terminal; Radical SAM; Deoxyribonuclease/rho motif-related TRAM
YP_005712234.1	PFAM: PhoH-like protein; KEGG: smd:Smed_0041 PhoH family protein
YP_005712235.1	TIGRFAM: Uncharacterised protein family UPF0054, metalloprotease YbeY, predicted; HAMAP: Uncharacterised protein family UPF0054, metalloprotease YbeY, predicted; KEGG: smd:Smed_0042 hypothetical protein; PFAM: Uncharacterised protein family UPF0054, metalloprotease YbeY, predicted
YP_005712236.1	PFAM: Cystathionine beta-synthase, core; Transporter-associated domain; KEGG: smd:Smed_0043 CBS domain-containing protein
YP_005712237.1	TIGRFAM: Apolipoprotein N-acyltransferase; HAMAP: Apolipoprotein N-acyltransferase; KEGG: smd:Smed_0044 apolipoprotein N-acyltransferase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
YP_005712238.1	KEGG: smd:Smed_0045 XRE family transcriptional regulator; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3
YP_005712239.1	TIGRFAM: S-adenosylmethionine synthetase; KEGG: smd:Smed_0046 S-adenosylmethionine synthetase; PFAM: S-adenosylmethionine synthetase, C-terminal; S-adenosylmethionine synthetase, central domain; S-adenosylmethionine synthetase, N-terminal
YP_005712240.1	PFAM: tRNA (guanine-N-7) methyltransferase; KEGG: smd:Smed_0047 tRNA (guanine-N(7)-)-methyltransferase
YP_005712241.1	PFAM: Protein of unknown function DUF1150; KEGG: smd:Smed_0048 hypothetical protein
YP_005712242.1	PFAM: Heat shock protein Hsp20; KEGG: smd:Smed_0049 heat shock protein HSP20
YP_005712243.1	KEGG: smd:Smed_0050 inosine/uridine-preferring nucleoside hydrolase; PFAM: Inosine/uridine-preferring nucleoside hydrolase domain
YP_005712244.1	KEGG: smd:Smed_0051 methyl-accepting chemotaxis sensory transducer; PFAM: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain; Cache; SMART: Chemotaxis methyl-accepting receptor, signalling; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; HAMP linker domain
YP_005712245.1	KEGG: smd:Smed_0052 ribokinase-like domain-containing protein; PFAM: Carbohydrate/purine kinase
YP_005712246.1	PFAM: DNA recombination RmuC; KEGG: smd:Smed_0053 hypothetical protein
YP_005712247.1	TIGRFAM: Formylmethionine deformylase; HAMAP: Formylmethionine deformylase; KEGG: smd:Smed_0054 peptide deformylase; PFAM: Formylmethionine deformylase
YP_005712248.1	PFAM: Formyl transferase, N-terminal; Formyl transferase, C-terminal; TIGRFAM: Methionyl-tRNA formyltransferase; HAMAP: Methionyl-tRNA formyltransferase; KEGG: smd:Smed_0055 methionyl-tRNA formyltransferase
YP_005712249.1	PFAM: Pseudouridine synthase I, TruA, alpha/beta domain; TIGRFAM: Pseudouridine synthase I, TruA; HAMAP: Pseudouridine synthase I, TruA; KEGG: rhi:NGR_c00590 tRNA pseudouridine synthase A
YP_005712250.1	KEGG: smd:Smed_0060 hypothetical protein
YP_005712251.1	TIGRFAM: Succinyl-diaminopimelate desuccinylase, proteobacteria; HAMAP: Succinyl-diaminopimelate desuccinylase, proteobacteria; KEGG: smd:Smed_0061 succinyl-diaminopimelate desuccinylase; PFAM: Peptidase M20; Peptidase M20, dimerisation
YP_005712252.1	KEGG: smd:Smed_0062 hydrophobe/amphiphile efflux-1 (HAE1) family protein; TIGRFAM: Hydrophobe/amphiphile efflux-1 HAE1; PFAM: Acriflavin resistance protein
YP_005712253.1	KEGG: smd:Smed_0063 RND family efflux transporter MFP subunit; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD
YP_005712254.1	KEGG: smd:Smed_0064 alpha/beta hydrolase domain-containing protein
YP_005712255.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: smd:Smed_0065 LysR family transcriptional regulator
YP_005712256.1	KEGG: smd:Smed_0067 DEAD/DEAH box helicase domain-containing protein; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Helicase, C-terminal; DbpA, RNA-binding; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal
YP_005712258.1	PFAM: Protein of unknown function DUF805; KEGG: smd:Smed_0068 hypothetical protein
YP_005712259.1	TIGRFAM: 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase; HAMAP: 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase; KEGG: smd:Smed_0069 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase
YP_005712260.1	PFAM: Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG; KEGG: smd:Smed_0070 hypothetical protein
YP_005712261.1	manually curated; TIGRFAM: Pyrimidine 5-nucleotidase; HAD-superfamily hydrolase, subfamily IA, variant 3; KEGG: smd:Smed_0071 pyrimidine 5'-nucleotidase; PFAM: Haloacid dehalogenase-like hydrolase
YP_005712262.1	PFAM: Drug/metabolite transporter; KEGG: smd:Smed_0072 hypothetical protein
YP_005712263.1	TIGRFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding; PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding; Ada DNA repair, metal-binding; KEGG: smd:Smed_0073 methylated-DNA--protein-cysteine methyltransferase; SMART: Helix-turn-helix, AraC type, DNA binding domain
YP_005712264.1	KEGG: smd:Smed_0074 hypothetical protein
YP_005712265.1	TIGRFAM: Acetylglutamate kinase; KEGG: smd:Smed_0075 acetylglutamate kinase; PFAM: Aspartate/glutamate/uridylate kinase
YP_005712266.1	PFAM: Anti-sigma K factor RskA; KEGG: smd:Smed_0076 hypothetical protein
YP_005712267.1	TIGRFAM: Methionine sulphoxide reductase B; Twin-arginine translocation pathway, signal sequence; KEGG: rhi:NGR_c00780 putative methionine sulphoxide reductase B; PFAM: Methionine sulphoxide reductase B
YP_005712268.1	PFAM: Uncharacterised conserved protein UCP014873, membrane associated; KEGG: smd:Smed_0077 hypothetical protein
YP_005712269.1	TIGRFAM: GTP-binding protein, ribosome biogenesis, YsxC; HAMAP: GTP-binding protein, ribosome biogenesis, YsxC; KEGG: smd:Smed_0078 ribosome biogenesis GTP-binding protein YsxC; PFAM: GTP-binding protein, HSR1-related
YP_005712270.1	TIGRFAM: Membrane insertion protein, OxaA/YidC, bacterial; Membrane insertion protein, OxaA/YidC; HAMAP: Membrane insertion protein, OxaA/YidC, bacterial; KEGG: smd:Smed_0079 putative inner membrane protein translocase component YidC; PFAM: Membrane insertion protein, OxaA/YidC
YP_005712271.1	TIGRFAM: Ribonuclease P; HAMAP: Ribonuclease P; KEGG: smd:Smed_0080 ribonuclease P; PFAM: Ribonuclease P
YP_005712272.1	PFAM: Ribosomal protein L34; manually curated; TIGRFAM: Ribosomal protein L34; KEGG: smd:Smed_0081 50S ribosomal protein L34; HAMAP: Ribosomal protein L34
YP_005712273.1	KEGG: smd:Smed_0082 methyl-accepting chemotaxis sensory transducer; PFAM: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain; SMART: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain
YP_005712274.1	PFAM: SNARE associated Golgi protein; KEGG: smd:Smed_0083 SNARE associated Golgi protein
YP_005712275.1	KEGG: smd:Smed_0084 pyridine nucleotide-disulphide oxidoreductase dimerisation region; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation
YP_005712276.1	KEGG: smd:Smed_0085 integral membrane sensor signal transduction histidine kinase; PFAM: ATPase-like, ATP-binding domain; HAMP linker domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; HAMP linker domain
YP_005712277.1	PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; Tetracycline transcriptional regulator, TetR, C-terminal; KEGG: rle:RL1054 TetR family transcriptional regulator
YP_005712278.1	PFAM: Endoribonuclease L-PSP; KEGG: rlt:Rleg2_0717 endoribonuclease L-PSP
YP_005712280.1	KEGG: ret:RHE_CH00425 L-lactate dehydrogenase (cytochrome) protein; PFAM: FMN-dependent dehydrogenase
YP_005712281.1	KEGG: mes:Meso_1513 hypothetical protein; TIGRFAM: Domain of unknown function DUF11; PFAM: Domain of unknown function DUF11
YP_005712282.1	KEGG: mes:Meso_1515 hypothetical protein; TIGRFAM: Domain of unknown function DUF11; PFAM: Domain of unknown function DUF11
YP_005712283.1	PFAM: Invasion associated locus B; KEGG: smd:Smed_0087 invasion associated locus B family protein
YP_005712284.1	KEGG: smd:Smed_0088 putative signal peptide protein
YP_005712285.1	PFAM: YbaK/aminoacyl-tRNA synthetase-associated domain; KEGG: smd:Smed_0089 YbaK/prolyl-tRNA synthetase associated region
YP_005712286.1	PFAM: Isoprenylcysteine carboxyl methyltransferase; KEGG: rhi:NGR_c00940 hypothetical protein contains isoprenylcysteine carboxyl methyltransferase domain
YP_005712288.1	PFAM: Protein of unknown function DUF1810; KEGG: smd:Smed_0090 hypothetical protein
YP_005712289.1	PFAM: NADP-dependent oxidoreductase domain; KEGG: rhi:NGR_c00960 aldo/keto reductase
YP_005712290.1	PFAM: Uncharacterised protein family UPF0029, Impact, N-terminal; Uncharacterised protein family UPF0029, Impact, C-terminal; KEGG: smd:Smed_0091 hypothetical protein
YP_005712291.1	TIGRFAM: Delta-1-pyrroline-5-carboxylate dehydrogenase 3; KEGG: smd:Smed_0092 bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; PFAM: Proline dehydrogenase; Aldehyde dehydrogenase domain
YP_005712292.1	PFAM: Uncharacterised protein family UPF0153; KEGG: smd:Smed_0093 hypothetical protein
YP_005712293.1	PFAM: Metallo-dependent phosphatase; KEGG: smd:Smed_0094 metallophosphoesterase
YP_005712294.1	KEGG: smd:Smed_0095 Sel1 domain-containing protein
YP_005712295.1	KEGG: smd:Smed_0096 hypothetical protein
YP_005712296.1	KEGG: smd:Smed_0098 CRP/FNR family transcriptional regulator; PFAM: Cyclic nucleotide-binding domain; SMART: Cyclic nucleotide-binding domain
YP_005712297.1	PFAM: Uncharacterised protein family YphA; KEGG: smd:Smed_0099 DoxX family protein
YP_005712298.1	PFAM: D-ribose pyranase RbsD/L-fucose mutarotase FucU; KEGG: smd:Smed_0100 RbsD or FucU transport
YP_005712299.1	PFAM: ROK; KEGG: smd:Smed_0101 ROK family protein
YP_005712300.1	PFAM: Periplasmic binding protein/LacI transcriptional regulator; KEGG: smd:Smed_0102 periplasmic binding protein/LacI transcriptional regulator
YP_005712301.1	PFAM: ABC transporter permease; KEGG: smd:Smed_0103 monosaccharide-transporting ATPase
YP_005712302.1	PFAM: ABC transporter-like; KEGG: smd:Smed_0104 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_005712303.1	KEGG: smd:Smed_0105 putative fructose transport system kinase
YP_005712304.1	PFAM: Amidohydrolase 2; TIGRFAM: Dihydroorotase homodimeric type; HAMAP: Dihydroorotase homodimeric type; KEGG: smd:Smed_0106 dihydroorotase
YP_005712305.1	TIGRFAM: Orotate phosphoribosyl transferase, clade 1; KEGG: rhi:NGR_c01150 orotate phosphoribosyltransferase; PFAM: Phosphoribosyltransferase
YP_005712306.1	KEGG: smd:Smed_0108 ribokinase-like domain-containing protein; PFAM: Carbohydrate/purine kinase
YP_005712307.1	KEGG: smd:Smed_0109 glucose-6-phosphate isomerase; PFAM: Phosphoglucose isomerase (PGI)
YP_005712308.1	KEGG: smd:Smed_0110 long-chain-fatty-acid--CoA ligase; PFAM: AMP-dependent synthetase/ligase
YP_005712309.1	PFAM: Major facilitator superfamily MFS-1; KEGG: bid:Bind_2119 major facilitator transporter
YP_005712310.1	PFAM: Uncharacterised protein family UPF0118; KEGG: smd:Smed_0111 hypothetical protein
YP_005712311.1	PFAM: CDP-alcohol phosphatidyltransferase; KEGG: smd:Smed_0112 CDP-alcohol phosphatidyltransferase
YP_005712312.1	KEGG: smd:Smed_0113 phospholipid/glycerol acyltransferase; PFAM: Phospholipid/glycerol acyltransferase; SMART: Phospholipid/glycerol acyltransferase
YP_005712313.1	PFAM: Phosphatidate cytidylyltransferase; KEGG: smd:Smed_0114 phosphatidate cytidylyltransferase
YP_005712314.1	PFAM: Bacterial extracellular solute-binding, family 1; KEGG: bvi:Bcep1808_3765 hypothetical protein
YP_005712315.1	PFAM: 2-nitropropane dioxygenase, NPD; KEGG: smd:Smed_0115 2-nitropropane dioxygenase NPD
YP_005712316.1	KEGG: smd:Smed_0116 hypothetical protein
YP_005712317.1	KEGG: smd:Smed_0117 hypothetical protein; TIGRFAM: Polyphosphate kinase 2, PA0141; PFAM: Polyphosphate kinase-2-related
YP_005712318.1	TIGRFAM: Signal transduction histidine kinase, phosphate regulon sensor PhoR; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; PAS fold-4; KEGG: smd:Smed_0118 PAS/PAC sensor signal transduction histidine kinase; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain
YP_005712319.1	KEGG: smd:Smed_0119 putative phosphate-binding periplasmic protein
YP_005712320.1	KEGG: smd:Smed_0120 phosphate ABC transporter, inner membrane subunit PstC; TIGRFAM: Phosphate ABC transporter, permease protein PstC; PFAM: ABC transporter, phosphate permease, PstC; Binding-protein-dependent transport systems inner membrane component
YP_005712321.1	KEGG: smd:Smed_0121 phosphate ABC transporter, inner membrane subunit PstA; TIGRFAM: Phosphate transport system permease protein 2; PFAM: Binding-protein-dependent transport systems inner membrane component
YP_005712322.1	SMART: ATPase, AAA+ type, core; TIGRFAM: Phosphate transport system permease protein 1; KEGG: rhi:NGR_c01470 phosphate transporter ATP-binding protein; PFAM: ABC transporter-like
YP_005712323.1	KEGG: smd:Smed_0123 phosphate uptake regulator, PhoU; TIGRFAM: PhoU; PFAM: PhoU
YP_005712324.1	TIGRFAM: Signal transduction response regulator, phosphate regulon transcriptional regulatory protein PhoB; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; KEGG: smd:Smed_0124 two component transcriptional regulator; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal
YP_005712325.1	PFAM: GcrA cell cycle regulator; KEGG: smd:Smed_0126 GcrA cell cycle regulator
YP_005712326.1	PFAM: Aminotransferase class-III; TIGRFAM: Acetylornithine/succinylornithine aminotransferase; HAMAP: Acetylornithine/succinyldiaminopimelate aminotransferase; KEGG: smd:Smed_0127 acetylornithine transaminase protein
YP_005712327.1	PFAM: Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding; Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain; TIGRFAM: Ornithine carbamoyltransferase; HAMAP: Ornithine carbamoyltransferase; KEGG: smd:Smed_0128 ornithine carbamoyltransferase
YP_005712328.1	PFAM: Heat shock protein Hsp33 protein; KEGG: smd:Smed_0129 HSP33-like chaperonin
YP_005712329.1	KEGG: smd:Smed_0130 ApaG; HAMAP: Uncharacterised protein family ApaG; PFAM: ApaG domain
YP_005712330.1	PFAM: CDP-alcohol phosphatidyltransferase; KEGG: smd:Smed_0132 CDP-alcohol phosphatidyltransferase
YP_005712331.1	KEGG: smd:Smed_0133 O-succinylhomoserine sulfhydrylase; TIGRFAM: O-succinylhomoserine sulfhydrylase; PFAM: Cys/Met metabolism, pyridoxal phosphate-dependent enzyme
YP_005712332.1	KEGG: smd:Smed_0134 2'-deoxycytidine 5'-triphosphate deaminase
YP_005712333.1	PFAM: Fatty acid hydroxylase; KEGG: smd:Smed_0136 hypothetical protein
YP_005712334.1	KEGG: smd:Smed_0137 hypothetical protein
YP_005712335.1	KEGG: smd:Smed_0138 hypothetical protein
YP_005712336.1	PFAM: Peptidase S24/S26A/S26B, conserved region; KEGG: smd:Smed_0139 putative phage repressor
YP_005712337.1	PFAM: Sodium/calcium exchanger membrane region; KEGG: smd:Smed_0140 sodium/calcium exchanger membrane region
YP_005712338.1	PFAM: Helix-turn-helix, HxlR type; KEGG: smd:Smed_0141 HxlR family transcriptional regulator
YP_005712339.1	PFAM: Activator of Hsp90 ATPase homologue 1-like; KEGG: smd:Smed_0142 activator of HSP90 ATPase 1 family protein
YP_005712340.1	KEGG: smd:Smed_0144 3-hydroxyacyl-CoA dehydrogenase NAD-binding; PFAM: 3-hydroxyacyl-CoA dehydrogenase, NAD binding; Crotonase, core; 3-hydroxyacyl-CoA dehydrogenase, C-terminal
YP_005712341.1	TIGRFAM: Thiolase; KEGG: smd:Smed_0145 acetyl-CoA acetyltransferase; PFAM: Thiolase, C-terminal; Thiolase, N-terminal
YP_005712342.1	KEGG: smd:Smed_0146 acyl-CoA dehydrogenase domain-containing protein; PFAM: Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA oxidase/dehydrogenase, type 1
YP_005712343.1	KEGG: smd:Smed_0147 peptidoglycan binding domain-containing protein; PFAM: Peptidoglycan binding-like; Sel1-like; SMART: Sel1-like
YP_005712344.1	PFAM: Protein of unknown function DUF81; KEGG: rhi:NGR_c01710 putative transmembrane protein
YP_005712345.1	KEGG: smd:Smed_0149 hypothetical protein; TIGRFAM: Conserved hypothetical protein CHP02186-related, transmembrane; PFAM: Conserved hypothetical protein CHP02186-related, transmembrane
YP_005712346.1	PFAM: Transcription regulator AsnC-type, C-terminal; KEGG: smd:Smed_0151 AsnC family transcriptional regulator
YP_005712347.1	PFAM: Metallo-dependent phosphatase; KEGG: smd:Smed_0152 metallophosphoesterase
YP_005712348.1	KEGG: smd:Smed_0153 DEAD/DEAH box helicase domain-containing protein; PFAM: DEAD/H associated; DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal
YP_005712349.1	KEGG: smd:Smed_0154 BadM/Rrf2 family transcriptional regulator; TIGRFAM: Transcription regulator Rrf2; PFAM: Transcription regulator Rrf2
YP_005712350.1	KEGG: smd:Smed_0155 alkylhydroperoxidase; TIGRFAM: Alkylhydroperoxidase AhpD core; PFAM: Carboxymuconolactone decarboxylase
YP_005712351.1	PFAM: Protein of unknown function DUF161; KEGG: smd:Smed_0156 hypothetical protein
YP_005712352.1	PFAM: Methyltransferase type 11; KEGG: smd:Smed_0157 methyltransferase type 12
YP_005712353.1	KEGG: smd:Smed_0158 hypothetical protein
YP_005712354.1	PFAM: CAP domain; KEGG: smd:Smed_0159 SCP-like extracellular
YP_005712355.1	KEGG: smd:Smed_0160 MATE efflux family protein; TIGRFAM: Multi antimicrobial extrusion protein; PFAM: Multi antimicrobial extrusion protein
YP_005712356.1	TIGRFAM: Dihydroorotate dehydrogenase, class 2; KEGG: smd:Smed_0161 dihydroorotate dehydrogenase 2; PFAM: Dihydroorotate dehydrogenase, class 1/ 2
YP_005712357.1	PFAM: Protein of unknown function DUF952; KEGG: rhi:NGR_c01820 hypothetical protein
YP_005712358.1	KEGG: smd:Smed_0163 putative signal peptide protein
YP_005712359.1	KEGG: rhi:NGR_c01840 predicted two-component transcriptional regulator, LuxR family; PFAM: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal; SMART: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal
YP_005712360.1	KEGG: smd:Smed_0165 integral membrane sensor hybrid histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction response regulator, receiver domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; Signal transduction response regulator, receiver domain; PAS
YP_005712361.1	TIGRFAM: Large-conductance mechanosensitive channel; HAMAP: Large-conductance mechanosensitive channel; KEGG: smd:Smed_0166 large-conductance mechanosensitive channel; PFAM: Large-conductance mechanosensitive channel
YP_005712362.1	KEGG: smd:Smed_0167 aspartate aminotransferase; PFAM: Aminotransferase, class I/classII
YP_005712363.1	TIGRFAM: UDP-glucose 4-epimerase; KEGG: smd:Smed_0168 UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase
YP_005712364.1	TIGRFAM: Isochorismate pyruvate-lyase, salicylic acid biosynthesis; PFAM: Chorismate mutase, type II; KEGG: smd:Smed_0169 chorismate mutase-related enzyme; SMART: Chorismate mutase
YP_005712365.1	manually curated
YP_005712366.1	KEGG: smd:Smed_0170 cytochrome d ubiquinol oxidase, subunit II; TIGRFAM: Cytochrome d ubiquinol oxidase, subunit II; PFAM: Cytochrome d ubiquinol oxidase, subunit II
YP_005712367.1	PFAM: Cytochrome d ubiquinol oxidase, subunit I; KEGG: smd:Smed_0171 cytochrome bd ubiquinol oxidase subunit I
YP_005712368.1	TIGRFAM: Peptidase M20D, amidohydrolase; KEGG: smd:Smed_0172 amidohydrolase; PFAM: Peptidase M20; Peptidase M20, dimerisation
YP_005712369.1	KEGG: smd:Smed_0173 polar amino acid ABC transporter, inner membrane subunit; TIGRFAM: Amino acid ABC transporter, permease protein, 3-TM domain, His/Glu/Gln/Arg/opine family; PFAM: Binding-protein-dependent transport systems inner membrane component
YP_005712370.1	KEGG: smd:Smed_0174 polar amino acid ABC transporter, inner membrane subunit; TIGRFAM: Amino acid ABC transporter, permease protein, 3-TM domain, His/Glu/Gln/Arg/opine family; PFAM: Binding-protein-dependent transport systems inner membrane component
YP_005712371.1	KEGG: smd:Smed_0175 extracellular solute-binding protein; PFAM: Extracellular solute-binding protein, family 3; SMART: Extracellular solute-binding protein, family 3
YP_005712372.1	PFAM: ABC transporter-like; KEGG: rhi:NGR_c01960 amino acid ABC transporter, ATP-binding protein; SMART: ATPase, AAA+ type, core
YP_005712373.1	PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: rhi:NGR_c01970 putative HTH-type transcriptional regulator, TetR family
YP_005712374.1	KEGG: smd:Smed_0178 aminotransferase class I and II; PFAM: Aminotransferase, class I/classII
YP_005712375.1	KEGG: smd:Smed_0179 hypothetical protein; PFAM: Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain; Thiamine pyrophosphate enzyme, central domain; Thiamine pyrophosphate enzyme, C-terminal TPP-binding
YP_005712376.1	KEGG: smd:Smed_0180 hypothetical protein
YP_005712377.1	KEGG: smd:Smed_0181 bifunctional preprotein translocase subunit SecD/SecF; TIGRFAM: SecD export membrane protein; SecD/SecF/SecDF export membrane protein, bacteria; SecF protein; PFAM: Preprotein translocase, SecD/SecF/SecDF; SecD/SecF/SecDF export membrane protein, GG motif, N-terminal
YP_005712378.1	KEGG: smd:Smed_0182 hypothetical protein
YP_005712379.1	KEGG: smd:Smed_0191 BadM/Rrf2 family transcriptional regulator; TIGRFAM: Transcription regulator Rrf2; PFAM: Transcription regulator Rrf2
YP_005712380.1	SMART: Cystathionine beta-synthase, core; TIGRFAM: KpsF/GutQ; KEGG: smd:Smed_0192 KpsF/GutQ family protein; PFAM: Sugar isomerase (SIS); Cystathionine beta-synthase, core
YP_005712381.1	PFAM: Capsule polysaccharide biosynthesis; KEGG: smd:Smed_0193 capsule polysaccharide biosynthesis protein
YP_005712382.1	PFAM: Sulfatase; KEGG: smd:Smed_0194 sulfatase
YP_005712383.1	KEGG: smd:Smed_0195 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR
YP_005712384.1	KEGG: smd:Smed_0196 8-amino-7-oxononanoate synthase; PFAM: Aminotransferase, class I/classII
YP_005712385.1	PFAM: Beta-ketoacyl synthase, N-terminal; Polyketide synthase, KR; Beta-ketoacyl synthase, C-terminal; Alcohol dehydrogenase, C-terminal; Phosphopantetheine-binding; Acyl transferase; Alcohol dehydrogenase GroES-like; KEGG: smd:Smed_0197 beta-ketoacyl synthase; SMART: Polyketide synthase, enoylreductase; Polyketide synthase, acyl transferase domain; Polyketide synthase, dehydratase domain; Polyketide synthase/Fatty acid synthase, KR
YP_005712386.1	PFAM: Polysaccharide export protein; Soluble ligand binding domain; KEGG: smd:Smed_0198 polysaccharide export protein
YP_005712387.1	KEGG: smd:Smed_0199 nicotinamidase; PFAM: Isochorismatase-like
YP_005712388.1	PFAM: Nicotinate phosphoribosyltransferase-like; TIGRFAM: Nicotinate phosphoribosyltransferase; HAMAP: Nicotinate phosphoribosyltransferase; KEGG: smd:Smed_0200 nicotinate phosphoribosyltransferase
YP_005712389.1	KEGG: smd:Smed_0201 hypothetical protein
YP_005712390.1	KEGG: smd:Smed_0202 hypothetical protein
YP_005712391.1	KEGG: rhi:NGR_b07180 hypothetical protein
YP_005712392.1	KEGG: rhi:NGR_b08290 hypothetical protein
YP_005712393.1	KEGG: rhi:NGR_b07160 putative copper resistance-related lipoprotein
YP_005712394.1	PFAM: Multicopper oxidase, type 3; Multicopper oxidase, type 2; KEGG: rhi:NGR_b07150 putative copper-containing oxidase
YP_005712395.1	PFAM: Blue (type 1) copper domain; KEGG: rhi:NGR_b08260 putative copper oxidase, possibly exported
YP_005712396.1	KEGG: rhi:NGR_b08250 hypothetical protein
YP_005712397.1	KEGG: rhi:NGR_b08240 probable membrane-bound adenylate class-3/4/guanylyl cyclase; PFAM: Adenylyl cyclase class-3/4/guanylyl cyclase; SMART: Adenylyl cyclase class-3/4/guanylyl cyclase
YP_005712398.1	manually curated; KEGG: smd:Smed_0205 hypothetical protein
YP_005712399.1	PFAM: Enolpyruvate transferase domain; TIGRFAM: UDP-N-acetylglucosamine 1-carboxyvinyltransferase; HAMAP: UDP-N-acetylglucosamine 1-carboxyvinyltransferase; KEGG: smd:Smed_0206 UDP-N-acetylglucosamine 1-carboxyvinyltransferase
YP_005712400.1	KEGG: smd:Smed_0207 hypothetical protein
YP_005712401.1	PFAM: Histidinol dehydrogenase, prokaryotic-type; TIGRFAM: Histidinol dehydrogenase, prokaryotic-type; HAMAP: Histidinol dehydrogenase, prokaryotic-type; KEGG: smd:Smed_0208 histidinol dehydrogenase
YP_005712402.1	KEGG: smd:Smed_0209 hypothetical protein; HAMAP: Uncharacterised conserved protein UCP032146; PFAM: Uncharacterised conserved protein UCP032146
YP_005712403.1	KEGG: smd:Smed_0210 protein tyrosine phosphatase; PFAM: Protein-tyrosine phosphatase, low molecular weight; SMART: Protein-tyrosine phosphatase, low molecular weight
YP_005712404.1	TIGRFAM: Translation initiation factor IF-1; HAMAP: Translation initiation factor IF-1; KEGG: avi:Avi_0640 translation initiation factor IF-1; PFAM: RNA-binding domain, S1, IF1 type
YP_005712405.1	TIGRFAM: Maf-like protein; HAMAP: Maf-like protein; KEGG: smd:Smed_0212 Maf-like protein; PFAM: Maf-like protein
YP_005712406.1	KEGG: smd:Smed_0213 zinc-binding protein; HAMAP: Uncharacterised protein family, zinc-binding; PFAM: Uncharacterised protein family, zinc-binding
YP_005712407.1	KEGG: btr:Btr_0524 hypothetical protein; manually curated; PFAM: Protein of unknown function DUF497
YP_005712408.1	KEGG: btr:Btr_0525 hypothetical protein
YP_005712409.1	PFAM: Uncharacterised protein family UPF0150; KEGG: rlt:Rleg2_4060 protein of unknown function UPF0150
YP_005712411.1	KEGG: smd:Smed_0215 HPr kinase
YP_005712412.1	KEGG: smd:Smed_0216 hypothetical protein
YP_005712413.1	KEGG: smd:Smed_0217 hypothetical protein
YP_005712415.1	PFAM: Protein of unknown function DUF930; KEGG: smd:Smed_0218 hypothetical protein
YP_005712416.1	PFAM: YbaK/aminoacyl-tRNA synthetase-associated domain; KEGG: smd:Smed_0219 YbaK/prolyl-tRNA synthetase associated region
YP_005712417.1	KEGG: smd:Smed_0220 hypothetical protein
YP_005712418.1	PFAM: Transglycosylase-associated protein; KEGG: smd:Smed_0221 transglycosylase-associated protein
YP_005712419.1	KEGG: smd:Smed_0222 L-rhamnose catabolism isomerase; TIGRFAM: L-rhamnose catabolism isomerase; PFAM: Xylose isomerase, TIM barrel domain
YP_005712420.1	TIGRFAM: Bifunctional rhamnulose-1-phosphate aldolase/alcohol dehydrogenase; KEGG: smd:Smed_0223 short chain dehydrogenase; PFAM: Short-chain dehydrogenase/reductase SDR; Class II aldolase/adducin, N-terminal
YP_005712421.1	KEGG: smd:Smed_0224 DeoR family transcriptional regulator; PFAM: HTH transcriptional regulator, DeoR; HTH transcriptional regulator, DeoR N-terminal; SMART: HTH transcriptional regulator, DeoR N-terminal
YP_005712422.1	TIGRFAM: Rhamnose ABC transporter, rhamnose-binding; KEGG: rhi:NGR_c02450 rhamnose ABC transporter, periplasmic rhamnose-binding protein
YP_005712423.1	PFAM: ABC transporter-like; KEGG: smd:Smed_0226 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_005712424.1	PFAM: ABC transporter permease; KEGG: smd:Smed_0227 monosaccharide-transporting ATPase
YP_005712425.1	PFAM: ABC transporter permease; KEGG: smd:Smed_0228 monosaccharide-transporting ATPase
YP_005712426.1	TIGRFAM: L-rhamnose 1-epimerase; HAMAP: L-rhamnose 1-epimerase; KEGG: smd:Smed_0229 L-rhamnose 1-epimerase; PFAM: Rhamnose mutarotase
YP_005712427.1	PFAM: Carbohydrate kinase, FGGY, N-terminal; KEGG: smd:Smed_0230 carbohydrate kinase FGGY
YP_005712428.1	KEGG: smd:Smed_0231 hypothetical protein
YP_005712429.1	KEGG: smd:Smed_0232 methyl-accepting chemotaxis sensory transducer; PFAM: Chemotaxis methyl-accepting receptor, signalling; SMART: Chemotaxis methyl-accepting receptor, signalling
YP_005712430.1	KEGG: smd:Smed_0233 putative chemotaxis protein CheX
YP_005712431.1	KEGG: smd:Smed_0234 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain
YP_005712432.1	KEGG: smd:Smed_0235 CheA signal transduction histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup, homodimeric; Signal transduction histidine kinase, phosphotransfer (Hpt) domain; CheW-like protein; SMART: CheW-like protein; Signal transduction histidine kinase, phosphotransfer (Hpt) domain; ATPase-like, ATP-binding domain
YP_005712433.1	KEGG: smd:Smed_0236 putative CheW protein; PFAM: CheW-like protein; SMART: CheW-like protein
YP_005712434.1	PFAM: MCP methyltransferase, CheR-type, SAM-binding domain, C-terminal; MCP methyltransferase, CheR-type, all-alpha domain, N-terminal; KEGG: rhi:NGR_c02560 chemotaxis protein methyltransferase, CheR-type; SMART: MCP methyltransferase, CheR-type
YP_005712435.1	SMART: Signal transduction response regulator, receiver domain; HAMAP: Signal transduction response regulator, chemotaxis, CheB; KEGG: smd:Smed_0238 chemotaxis-specific methylesterase; PFAM: Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase; Signal transduction response regulator, receiver domain
YP_005712436.1	KEGG: smd:Smed_0239 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain
YP_005712437.1	HAMAP: Chemoreceptor glutamine deamidase CheD; KEGG: smd:Smed_0240 chemoreceptor glutamine deamidase CheD; PFAM: Chemoreceptor glutamine deamidase CheD
YP_005712438.1	KEGG: smd:Smed_0241 hypothetical protein
YP_005712439.1	PFAM: Transposase, IS4-like; KEGG: rhi:NGR_b15530 putative transposase Y4zB-like protein
YP_005712440.1	KEGG: smd:Smed_0242 flagellar MS-ring protein; TIGRFAM: Flagellar FliF M-ring protein; PFAM: Secretory protein YscJ/FliF; Flagellar M-ring C-terminal
YP_005712441.1	manually curated; PFAM: Transcription regulator LuxR, C-terminal; KEGG: smd:Smed_0243 regulatory protein LuxR; SMART: Transcription regulator LuxR, C-terminal
YP_005712442.1	KEGG: smd:Smed_0244 response regulator receiver protein; PFAM: Transcription regulator LuxR, C-terminal; SMART: Transcription regulator LuxR, C-terminal
YP_005712443.1	KEGG: smd:Smed_0245 hypothetical protein
YP_005712444.1	KEGG: smd:Smed_0246 flagellar biosynthesis protein FlhB; TIGRFAM: Flagellar biosynthetic protein FlhB; PFAM: Type III secretion exporter
YP_005712445.1	PFAM: Flagellar motor switch protein FliG, C-terminal; KEGG: smd:Smed_0247 flagellar motor switch protein G
YP_005712446.1	KEGG: smd:Smed_0248 flagellar motor switch protein FliN; TIGRFAM: Flagellar motor switch FliN; PFAM: Surface presentation of antigen (SpoA)
YP_005712447.1	PFAM: Surface presentation of antigen (SpoA); KEGG: smd:Smed_0249 surface presentation of antigens (SpoA) protein
YP_005712448.1	TIGRFAM: Flagellar motor stator, MotA; KEGG: smd:Smed_0250 flagellar motor protein MotA
YP_005712449.1	PFAM: Protein of unknown function DUF1217; KEGG: smd:Smed_0251 hypothetical protein
YP_005712450.1	KEGG: smd:Smed_0252 flagellar basal body rod protein FlgF; TIGRFAM: Flagellar basal-body rod FlgF; Fagellar hook-basal body protein, FlgE/F/G; PFAM: Flagellar basal body rod protein, N-terminal
YP_005712451.1	TIGRFAM: Flagellar export ATPase, FliI, clade 3; ATPase, type III secretion system, FliI/YscN; PFAM: ATPase, alpha/beta subunit, nucleotide-binding domain; KEGG: smd:Smed_0253 flagellum-specific ATP synthase; SMART: ATPase, AAA+ type, core
YP_005712452.1	KEGG: smd:Smed_0254 hypothetical protein
YP_005712453.1	KEGG: smd:Smed_0255 flagellar basal body rod protein FlgB
YP_005712454.1	KEGG: smd:Smed_0256 flagellar basal body rod protein FlgC; TIGRFAM: Flagellar basal-body rod protein FlgC; PFAM: Domain of unknown function DUF1078, C-terminal; Flagellar basal body rod protein, N-terminal
YP_005712455.1	KEGG: smd:Smed_0257 flagellar hook-basal body protein FliE; HAMAP: Flagellar hook-basal body complex protein FliE; PFAM: Flagellar hook-basal body complex protein FliE
YP_005712456.1	KEGG: smd:Smed_0258 flagellar basal body rod protein FlgG; TIGRFAM: Flagellar basal-body rod FlgG; Fagellar hook-basal body protein, FlgE/F/G; PFAM: Domain of unknown function DUF1078, C-terminal; Flagellar basal body rod protein, N-terminal
YP_005712457.1	TIGRFAM: Flagella basal body P-ring formation protein FlgA; PFAM: SAF domain; KEGG: smd:Smed_0259 flagellar basal body P-ring biosynthesis protein FlgA; SMART: SAF domain
YP_005712458.1	KEGG: smd:Smed_0260 flagellar basal body P-ring protein; HAMAP: Flagellar P-ring protein; PFAM: Flagellar P-ring protein
YP_005712459.1	KEGG: smd:Smed_0261 hypothetical protein
YP_005712460.1	KEGG: smd:Smed_0262 flagellar basal body L-ring protein; HAMAP: Flagellar L-ring protein; PFAM: Flagellar L-ring protein
YP_005712461.1	PFAM: Flagellar basal body-associated protein FliL; KEGG: smd:Smed_0263 flagellar basal body-associated protein FliL
YP_005712462.1	KEGG: smd:Smed_0264 flagellar biosynthesis protein FliP; TIGRFAM: Flagellar transport protein FliP; PFAM: Type III secretion system inner membrane P protein
YP_005712463.1	PFAM: Flagellin, D0/D1 domain; KEGG: smd:Smed_0265 flagellin domain-containing protein
YP_005712464.1	PFAM: Flagellin, D0/D1 domain; KEGG: smd:Smed_0266 flagellin domain-containing protein
YP_005712465.1	PFAM: Flagellin, D0/D1 domain; KEGG: smd:Smed_0267 flagellin domain-containing protein
YP_005712466.1	PFAM: Flagellin, D0/D1 domain; KEGG: smd:Smed_0268 flagellin domain-containing protein
YP_005712467.1	KEGG: smd:Smed_0270 hypothetical protein
YP_005712468.1	PFAM: Outer membrane protein, OmpA/MotB, C-terminal; KEGG: smd:Smed_0271 flagellar motor protein MotB
YP_005712469.1	KEGG: smd:Smed_0272 chemotaxis protein
YP_005712470.1	PFAM: Flagellar hook-length control protein-like, C-terminal domain; KEGG: smd:Smed_0273 chemotaxis protein (motility protein D)
YP_005712471.1	PFAM: Lytic transglycosylase-like, catalytic; KEGG: rhi:NGR_c02920 putative lytic transglycosylase-like protein, catalytic
YP_005712472.1	KEGG: smd:Smed_0275 two component transcriptional regulator; PFAM: Signal transduction response regulator, C-terminal; Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, C-terminal
YP_005712473.1	KEGG: smd:Smed_0276 flagellar hook protein FlgE; TIGRFAM: Fagellar hook-basal body protein, FlgE/F/G; PFAM: Flagellar basal body FlaE; Flagellar basal body rod protein, N-terminal; Domain of unknown function DUF1078, C-terminal
YP_005712474.1	KEGG: smd:Smed_0277 flagellar hook-associated protein FlgK; TIGRFAM: Flagellar hook-associated protein, FlgK; PFAM: Domain of unknown function DUF1078, C-terminal
YP_005712475.1	KEGG: smd:Smed_0278 flagellar hook-associated protein FlgL
YP_005712476.1	PFAM: Flagellar FlaF; KEGG: smd:Smed_0279 flagellar biosynthesis regulatory protein FlaF
YP_005712477.1	KEGG: smd:Smed_0280 flagellar biosynthesis repressor FlbT; HAMAP: flagellum biosynthesis repressor protein flbT; PFAM: Flagellar FlbT
YP_005712478.1	PFAM: Flagellar hook capping protein; KEGG: smd:Smed_0281 flagellar basal body rod modification protein
YP_005712479.1	KEGG: smd:Smed_0282 flagellar biosynthesis protein FliQ; TIGRFAM: Flagellar biosynthesis protein FliQ; PFAM: Bacterial export protein FliQ, family 3
YP_005712480.1	KEGG: smd:Smed_0283 flagellar biosynthesis protein FlhA; TIGRFAM: Flagellar biosynthesis protein FlhA; PFAM: Type III secretion system FHIPEP
YP_005712481.1	KEGG: smd:Smed_0284 flagellar biosynthesis protein FliR; TIGRFAM: Flagellar biosynthesis protein FliR; PFAM: Type III secretion system inner membrane R protein
YP_005712482.1	KEGG: smd:Smed_0285 hypothetical protein
YP_005712483.1	PFAM: Flagellar protein FlgJ, N-terminal; KEGG: smd:Smed_0286 hypothetical protein
YP_005712484.1	KEGG: smd:Smed_0287 hypothetical protein
YP_005712485.1	KEGG: smd:Smed_0288 hypothetical protein
YP_005712486.1	PFAM: Glycosyl transferase, family 2; KEGG: smd:Smed_0289 glycosyl transferase family protein
YP_005712487.1	HAMAP: Tetrahydrofolate dehydrogenase/cyclohydrolase; KEGG: smd:Smed_0290 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/5,10-methylene-tetrahydrofolate cyclohydrolase; PFAM: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
YP_005712488.1	KEGG: smd:Smed_0291 alanine racemase; PFAM: Periplasmic binding protein/LacI transcriptional regulator; HTH transcriptional regulator, LacI; SMART: HTH transcriptional regulator, LacI
YP_005712489.1	PFAM: Bacterial extracellular solute-binding, family 1; KEGG: smd:Smed_0292 extracellular solute-binding protein
YP_005712490.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_0293 binding-protein-dependent transport systems inner membrane component
YP_005712491.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_0294 binding-protein-dependent transport systems inner membrane component
YP_005712492.1	KEGG: smd:Smed_0295 alpha amylase catalytic region; PFAM: Glycosyl hydrolase, family 13, catalytic domain; SMART: Glycosyl hydrolase, family 13, subfamily, catalytic domain
YP_005712493.1	PFAM: ABC transporter-like; Transport-associated OB, type 2; KEGG: smd:Smed_0296 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_005712494.1	KEGG: smd:Smed_0297 hypothetical protein
YP_005712495.1	PFAM: Transposase, IS4-like; KEGG: rhi:NGR_b15530 putative transposase Y4zB-like protein
YP_005712496.1	TIGRFAM: 6-phosphogluconate dehydratase; KEGG: smd:Smed_0298 phosphogluconate dehydratase; PFAM: Dihydroxy-acid/6-phosphogluconate dehydratase
YP_005712497.1	KEGG: smd:Smed_0299 6-phosphogluconolactonase; TIGRFAM: 6-phosphogluconolactonase, DevB-type
YP_005712498.1	TIGRFAM: Glucose-6-phosphate dehydrogenase; KEGG: smd:Smed_0300 glucose-6-phosphate 1-dehydrogenase; PFAM: Glucose-6-phosphate dehydrogenase, C-terminal; Glucose-6-phosphate dehydrogenase, NAD-binding
YP_005712499.1	PFAM: FAD dependent oxidoreductase; KEGG: smd:Smed_0301 FAD dependent oxidoreductase
YP_005712500.1	KEGG: smd:Smed_0302 glutamate--putrescine ligase; PFAM: Glutamine synthetase, catalytic domain; Glutamine synthetase, beta-Grasp
YP_005712501.1	KEGG: smd:Smed_0303 hypothetical protein; TIGRFAM: Conserved hypothetical protein CHP00275, flavoprotein HI0933-like; PFAM: Conserved hypothetical protein CHP00275, flavoprotein HI0933-like
YP_005712502.1	KEGG: smd:Smed_0304 hypothetical protein
YP_005712503.1	KEGG: smd:Smed_0305 methyl-accepting chemotaxis sensory transducer; PFAM: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain; SMART: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain
YP_005712505.1	PFAM: HTH transcriptional regulator, LysR; KEGG: smd:Smed_0306 LysR family transcriptional regulator
YP_005712506.1	KEGG: smd:Smed_0307 hypothetical protein
YP_005712507.1	TIGRFAM: Isocitrate lyase; KEGG: smd:Smed_0308 isocitrate lyase; PFAM: Isocitrate lyase/phosphorylmutase
YP_005712508.1	KEGG: smd:Smed_0309 hypothetical protein; PFAM: Protein of unknown function DUF2083,transcriptional regulator; Protein of unknown function DUF955; Helix-turn-helix type 3; SMART: Helix-turn-helix type 3
YP_005712509.1	PFAM: Bacterial extracellular solute-binding, family 1; KEGG: smd:Smed_0310 extracellular solute-binding protein
YP_005712510.1	SMART: ATPase, AAA+ type, core; TIGRFAM: Spermidine/putrescine ABC transporter ATP-binding subunit; KEGG: smd:Smed_0311 spermidine/putrescine ABC transporter ATPase subunit; PFAM: ABC transporter-like; Transport-associated OB, type 2
YP_005712511.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_0312 binding-protein-dependent transport systems inner membrane component
YP_005712512.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: rhi:NGR_c03310 putrescine ABC transporter system permease protein PotI
YP_005712513.1	KEGG: smd:Smed_0314 AsmA family protein
YP_005712514.1	TIGRFAM: Acetoacetyl-CoA synthase; KEGG: smd:Smed_0315 acetoacetyl-CoA synthetase; PFAM: AMP-dependent synthetase/ligase
YP_005712515.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_0317 binding-protein-dependent transport systems inner membrane component
YP_005712516.1	TIGRFAM: PAS; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; PAS fold; KEGG: smd:Smed_0318 PAS/PAC sensor signal transduction histidine kinase; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; PAS
YP_005712517.1	KEGG: smd:Smed_0319 phasin; TIGRFAM: Phasin, subfamily 2; PFAM: Phasin
YP_005712518.1	KEGG: smd:Smed_0321 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR
YP_005712519.1	TIGRFAM: FAD-linked oxidoreductase; KEGG: smd:Smed_0322 FAD-linked oxidoreductase; PFAM: FAD linked oxidase, N-terminal; D-arabinono-1,4-lactone oxidase
YP_005712520.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: rhi:NGR_c03380 putative LysR family transcription regulator protein
YP_005712521.1	TIGRFAM: Methylmalonate-semialdehyde dehydrogenase; KEGG: smd:Smed_0324 methylmalonate-semialdehyde dehydrogenase; PFAM: Aldehyde dehydrogenase domain
YP_005712522.1	PFAM: Protein of unknown function DUF898; KEGG: smd:Smed_0325 hypothetical protein
YP_005712523.1	PFAM: Peptidase M48; KEGG: smd:Smed_0326 peptidase M48 Ste24p
YP_005712524.1	PFAM: Bacterial extracellular solute-binding, family 1; KEGG: smd:Smed_0327 extracellular solute-binding protein
YP_005712525.1	KEGG: smd:Smed_0328 iron-responsive transcriptional regulator; TIGRFAM: Transcription regulator Rrf2; PFAM: Transcription regulator Rrf2
YP_005712526.1	PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: smd:Smed_0329 extracellular solute-binding protein
YP_005712527.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: rhi:NGR_c03470 dipeptide ABC transport system permease protein DppB
YP_005712528.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_0331 binding-protein-dependent transport systems inner membrane component
YP_005712529.1	PFAM: ABC transporter-like; Oligopeptide/dipeptide ABC transporter, C-terminal; KEGG: smd:Smed_0332 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_005712530.1	PFAM: ABC transporter-like; Oligopeptide/dipeptide ABC transporter, C-terminal; KEGG: smd:Smed_0333 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_005712531.1	PFAM: Endoribonuclease L-PSP; KEGG: rhi:NGR_c03510 putative endoribonuclease L-PSP family protein
YP_005712532.1	KEGG: smd:Smed_0335 hypothetical protein
YP_005712533.1	PFAM: Uncharacterised protein family UPF0118; KEGG: smd:Smed_0336 hypothetical protein
YP_005712534.1	KEGG: smd:Smed_0337 two-component response regulator; PFAM: Signal transduction response regulator, receiver domain; RNA polymerase sigma factor 70, region 4 type 2; SMART: Signal transduction response regulator, receiver domain
YP_005712535.1	KEGG: smd:Smed_0338 hypothetical protein
YP_005712536.1	PFAM: Rickettsia 17kDa surface antigen; KEGG: smd:Smed_0339 17 kDa surface antigen
YP_005712537.1	KEGG: rhi:NGR_c03570 hypothetical protein
YP_005712538.1	KEGG: smd:Smed_0341 hypothetical protein; HAMAP: Protein of unknown function DUF1328; PFAM: Protein of unknown function DUF1328
YP_005712539.1	KEGG: smd:Smed_0342 FAD dependent oxidoreductase; PFAM: FAD dependent oxidoreductase
YP_005712540.1	KEGG: smd:Smed_0347 hypothetical protein
YP_005712541.1	PFAM: MgtC/SapB transporter; KEGG: smd:Smed_0348 MgtC/SapB transporter
YP_005712542.1	KEGG: smd:Smed_0349 hypothetical protein
YP_005712543.1	KEGG: smd:Smed_0350 hypothetical protein
YP_005712544.1	KEGG: smd:Smed_0351 hypothetical protein
YP_005712545.1	KEGG: smd:Smed_0352 putative transmembrane protein
YP_005712546.1	PFAM: Protein of unknown function DUF899, thioredoxin-like; KEGG: smd:Smed_0353 protein of unknown function DUF899 thioredoxin family protein
YP_005712547.1	KEGG: smd:Smed_0354 hypothetical protein
YP_005712548.1	PFAM: SMP-30/Gluconolaconase/LRE-like region; KEGG: smd:Smed_0355 hypothetical protein
YP_005712549.1	PFAM: Protein of unknown function DUF1236; KEGG: smd:Smed_0356 hypothetical protein
YP_005712550.1	KEGG: rhi:NGR_c14230 hypothetical protein
YP_005712551.1	PFAM: Major facilitator superfamily MFS-1; KEGG: ret:RHE_PE00231 putative ABC transporter, permease protein
YP_005712552.1	manually curated; TIGRFAM: Chromate transporter, long chain; KEGG: bid:Bind_2523 chromate transporter; PFAM: Chromate transporter
YP_005712553.1	KEGG: smd:Smed_1377 putative signal peptide protein
YP_005712554.1	manually curated; KEGG: smd:Smed_0357 hypothetical protein
YP_005712555.1	PFAM: Ppx/GppA phosphatase; KEGG: smd:Smed_0372 Ppx/GppA phosphatase
YP_005712556.1	KEGG: smd:Smed_0373 ribosomal RNA methyltransferase RrmJ/FtsJ; HAMAP: Ribosomal RNA large subunit methyltransferase E; PFAM: Ribosomal RNA methyltransferase RrmJ/FtsJ
YP_005712557.1	KEGG: smd:Smed_0374 glyoxalase/bleomycin resistance protein/dioxygenase; manually curated; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase
YP_005712558.1	KEGG: smd:Smed_0377 EmrB/QacA family drug resistance transporter; TIGRFAM: Drug resistance transporter EmrB/QacA subfamily; PFAM: Major facilitator superfamily MFS-1
YP_005712559.1	KEGG: smd:Smed_0378 beta-lactamase domain-containing protein; PFAM: Beta-lactamase-like; SMART: Beta-lactamase-like
YP_005712560.1	SMART: Cystathionine beta-synthase, core; TIGRFAM: IMP dehydrogenase; KEGG: smd:Smed_0379 inosine 5'-monophosphate dehydrogenase; PFAM: IMP dehydrogenase/GMP reductase; Cystathionine beta-synthase, core
YP_005712561.1	KEGG: smd:Smed_0380 hypothetical protein
YP_005712562.1	KEGG: smd:Smed_0381 carboxymethylenebutenolidase; PFAM: Dienelactone hydrolase
YP_005712563.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: smd:Smed_0382 LysR family transcriptional regulator
YP_005712564.1	KEGG: smd:Smed_0383 catalase; PFAM: Catalase-related subgroup; Catalase-related immune responsive
YP_005712565.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: smd:Smed_0384 LysR family transcriptional regulator
YP_005712566.1	KEGG: rhi:NGR_c03830 hypothetical protein
YP_005712567.1	PFAM: Protein of unknown function DUF2136; KEGG: pde:Pden_0264 hypothetical protein
YP_005712568.1	KEGG: pde:Pden_0265 XRE family transcriptional regulator
YP_005712569.1	KEGG: smd:Smed_0386 hypothetical protein
YP_005712570.1	TIGRFAM: Glutamate--cysteine ligase, plant; KEGG: smd:Smed_0387 glutamate--cysteine ligase; PFAM: Glutamate--cysteine ligase, GCS2
YP_005712571.1	KEGG: smd:Smed_0388 16S ribosomal RNA methyltransferase RsmE; TIGRFAM: Ribosomal RNA small subunit methyltransferase E; PFAM: Ribosomal RNA small subunit methyltransferase E
YP_005712572.1	PFAM: Phosphate transporter; KEGG: smd:Smed_0389 phosphate transporter
YP_005712573.1	PFAM: NUDIX hydrolase domain; KEGG: smd:Smed_0390 NUDIX hydrolase
YP_005712574.1	KEGG: smd:Smed_0391 GntR domain-containing protein; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: HTH transcriptional regulator, GntR; GntR, C-terminal
YP_005712575.1	KEGG: smd:Smed_0392 hypothetical protein
YP_005712576.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: smd:Smed_0393 LysR family transcriptional regulator
YP_005712577.1	KEGG: smd:Smed_0394 D-lactate dehydrogenase (cytochrome); PFAM: FAD-linked oxidase, C-terminal; FAD linked oxidase, N-terminal
YP_005712578.1	PFAM: FAD linked oxidase, N-terminal; FAD-linked oxidase, C-terminal; KEGG: smd:Smed_0395 FAD linked oxidase domain-containing protein
YP_005712579.1	PFAM: Cysteine-rich domain; 4Fe-4S binding domain; KEGG: smd:Smed_0396 hypothetical protein
YP_005712580.1	PFAM: YkuD domain; KEGG: smd:Smed_0397 ErfK/YbiS/YcfS/YnhG family protein
YP_005712581.1	PFAM: YkuD domain; KEGG: smd:Smed_0398 ErfK/YbiS/YcfS/YnhG family protein
YP_005712582.1	KEGG: smd:Smed_0399 DNA-3-methyladenine glycosylase I; PFAM: Methyladenine glycosylase
YP_005712583.1	PFAM: Permease, cytosine/purines, uracil, thiamine, allantoin; KEGG: smd:Smed_0400 permease for cytosine/purines uracil thiamine allantoin
YP_005712584.1	PFAM: Domain of unknown function DUF305; KEGG: smd:Smed_0401 hypothetical protein
YP_005712585.1	KEGG: smd:Smed_0402 hypothetical protein
YP_005712586.1	PFAM: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain; Anticodon-binding; TIGRFAM: Histidyl-tRNA synthetase, class IIa, subgroup; HAMAP: Histidyl-tRNA synthetase, class IIa, subgroup; KEGG: smd:Smed_0403 histidyl-tRNA synthetase
YP_005712587.1	KEGG: smd:Smed_0404 ATP phosphoribosyltransferase regulatory subunit; HAMAP: ATP phosphoribosyltransferase regulatory subunit; PFAM: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain
YP_005712588.1	TIGRFAM: ATP phosphoribosyltransferase, catalytic domain; KEGG: rhi:NGR_c04030 ATP phosphoribosyltransferase catalytic subunit; PFAM: ATP phosphoribosyltransferase, catalytic domain
YP_005712589.1	PFAM: Glutathione S-transferase, N-terminal; Glutathione S-transferase, C-terminal; KEGG: smd:Smed_0406 glutathione S-transferase domain-containing protein
YP_005712590.1	KEGG: smd:Smed_0407 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase
YP_005712591.1	TIGRFAM: Chaperonin Cpn60; HAMAP: Chaperonin Cpn60; KEGG: smd:Smed_0408 chaperonin GroEL; PFAM: Chaperonin Cpn60/TCP-1
YP_005712592.1	HAMAP: Chaperonin Cpn10; PFAM: Chaperonin Cpn10; KEGG: rhi:NGR_c04090 co-chaperonin GroES; SMART: Chaperonin Cpn10
YP_005712593.1	KEGG: rhi:NGR_c04100 rhodanese domain protein; PFAM: Chromate resistance exported protein; SMART: Rhodanese-like
YP_005712594.1	KEGG: smd:Smed_0410 HAD family hydrolase; TIGRFAM: HAD-superfamily hydrolase, subfamily IIA; HAD-superfamily hydrolase, subfamily IIA, hypothetical 3; PFAM: Haloacid dehalogenase-like hydrolase
YP_005712595.1	SMART: Riboflavin kinase; TIGRFAM: Riboflavin kinase/FAD synthetase; KEGG: smd:Smed_0411 bifunctional riboflavin kinase/FMN adenylyltransferase; PFAM: FAD synthetase; Riboflavin kinase
YP_005712596.1	TIGRFAM: Isoleucyl-tRNA synthetase, class Ia; HAMAP: Isoleucyl-tRNA synthetase, class Ia; KEGG: smd:Smed_0412 isoleucyl-tRNA synthetase
YP_005712597.1	KEGG: smd:Smed_0413 hypothetical protein
YP_005712598.1	PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: smd:Smed_0414 GCN5-related N-acetyltransferase
YP_005712599.1	PFAM: CMP/dCMP deaminase, zinc-binding; KEGG: rhi:NGR_c04170 putative cytidine and deoxycytidylate deaminase
YP_005712600.1	KEGG: smd:Smed_0416 pseudouridine synthase; PFAM: RNA-binding S4; Pseudouridine synthase, RsuA and RluB/C/D/E/F; SMART: RNA-binding S4
YP_005712601.1	KEGG: smd:Smed_0417 putative methyltransferase; TIGRFAM: RNA methyltransferase, RsmD; PFAM: RNA methyltransferase, RsmD
YP_005712602.1	PFAM: Patatin/Phospholipase A2-related; KEGG: smd:Smed_0418 patatin
YP_005712603.1	PFAM: PilT protein, N-terminal; KEGG: nha:Nham_4577 PilT protein-like
YP_005712604.1	PFAM: Rv0623-like transcription factor; KEGG: nha:Nham_4578 Rv0623-like transcription factor
YP_005712605.1	KEGG: smd:Smed_0420 potassium efflux system protein; TIGRFAM: K+/H+ exchanger; PFAM: Cation/H+ exchanger; Regulator of K+ conductance, N-terminal
YP_005712606.1	PFAM: Peptidase U62, modulator of DNA gyrase; KEGG: smd:Smed_0421 peptidase U62 modulator of DNA gyrase
YP_005712607.1	PFAM: Inositol monophosphatase; KEGG: smd:Smed_0422 inositol monophosphatase
YP_005712608.1	KEGG: smd:Smed_0423 hypothetical protein
YP_005712609.1	PFAM: Three-deoxy-D-manno-octulosonic-acid transferase, N-terminal; Glycosyl transferase, group 1; KEGG: smd:Smed_0424 3-deoxy-D-manno-octulosonic-acid transferase
YP_005712610.1	KEGG: smd:Smed_0425 HAD family hydrolase; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase-like hydrolase
YP_005712611.1	PFAM: Tetraacyldisaccharide 4'-kinase; TIGRFAM: Tetraacyldisaccharide 4'-kinase; HAMAP: Tetraacyldisaccharide 4'-kinase; KEGG: smd:Smed_0426 tetraacyldisaccharide 4'-kinase
YP_005712612.1	manually curated; KEGG: smd:Smed_6023 transposase
YP_005712613.1	PFAM: Protein of unknown function DUF2093; KEGG: smd:Smed_0427 hypothetical protein
YP_005712614.1	SMART: MutL, C-terminal, dimerisation; TIGRFAM: DNA mismatch repair protein, N-terminal; KEGG: smd:Smed_0428 DNA mismatch repair protein; HAMAP: DNA mismatch repair protein, MutL; PFAM: MutL, C-terminal, dimerisation; DNA mismatch repair protein, C-terminal; ATPase-like, ATP-binding domain
YP_005712615.1	TIGRFAM: PAS; PFAM: Signal transduction response regulator, receiver domain; PAS fold-4; KEGG: smd:Smed_0429 putative PAS/PAC sensor protein; SMART: Signal transduction response regulator, receiver domain; PAS
YP_005712616.1	TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; KEGG: smd:Smed_0430 diguanylate cyclase/phosphodiesterase; SMART: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted
YP_005712617.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: smd:Smed_0431 LysR family transcriptional regulator
YP_005712618.1	PFAM: Trimethylamine methyltransferase; KEGG: smd:Smed_0432 trimethylamine methyltransferase
YP_005712619.1	PFAM: PRC-barrel; KEGG: smd:Smed_0433 PRC-barrel domain-containing protein
YP_005712620.1	KEGG: rhi:NGR_c04330 dihydroxy-acid dehydratase; PFAM: Dihydroxy-acid/6-phosphogluconate dehydratase
YP_005712621.1	PFAM: SMP-30/Gluconolaconase/LRE-like region; KEGG: smd:Smed_0435 SMP-30/gluconolaconase/LRE domain-containing protein
YP_005712622.1	KEGG: smd:Smed_0436 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; PFAM: KDPG/KHG aldolase
YP_005712623.1	KEGG: smd:Smed_0437 2-keto-3-deoxy-galactonokinase; PFAM: 2-keto-3-deoxy-galactonokinase
YP_005712624.1	PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: smd:Smed_0438 short-chain dehydrogenase/reductase SDR; SMART: Polyketide synthase/Fatty acid synthase, KR
YP_005712625.1	KEGG: smd:Smed_0439 transcriptional regulator IclR; PFAM: Transcription regulator IclR, C-terminal; Transcription regulator IclR, N-terminal; SMART: Transcription regulator IclR, N-terminal
YP_005712626.1	KEGG: smd:Smed_0440 regulatory protein LuxR; PFAM: Transcription factor LuxR-like, autoinducer-binding domain; Transcription regulator LuxR, C-terminal; SMART: Transcription regulator LuxR, C-terminal
YP_005712627.1	KEGG: smd:Smed_0441 regulatory protein LuxR; PFAM: Transcription factor LuxR-like, autoinducer-binding domain; Transcription regulator LuxR, C-terminal; SMART: Transcription regulator LuxR, C-terminal
YP_005712628.1	PFAM: ATPase-like, ParA/MinD; Domain of unknown function DUF59; KEGG: smd:Smed_0442 hypothetical protein
YP_005712629.1	PFAM: Mg2+ transporter protein, CorA-like; KEGG: smd:Smed_0443 magnesium and cobalt transport protein CorA
YP_005712630.1	KEGG: smd:Smed_0444 K potassium transporter; HAMAP: Potassium uptake protein, low affinity, Kup; PFAM: K+ potassium transporter
YP_005712631.1	PFAM: Cell wall hydrolase, SleB; KEGG: smd:Smed_0445 cell wall hydrolase SleB
YP_005712632.1	KEGG: smd:Smed_0446 putative FOF1 ATP synthase, subunit I transmembrane protein
YP_005712633.1	TIGRFAM: ATPase, F0 complex, subunit A; HAMAP: ATPase, F0 complex, subunit A; KEGG: smd:Smed_0447 F0F1 ATP synthase subunit A; PFAM: ATPase, F0 complex, subunit A
YP_005712634.1	KEGG: smd:Smed_0448 F0F1 ATP synthase subunit C; HAMAP: ATPase, F0 complex, subunit C; PFAM: ATPase, F0/V0 complex, subunit C
YP_005712635.1	KEGG: smd:Smed_0449 F0F1 ATP synthase subunit B'; HAMAP: ATPase, F0 complex, subunit B/B', bacterial/chloroplast; PFAM: ATPase, F0 complex, subunit B/B', bacterial/chloroplast
YP_005712636.1	TIGRFAM: ATPase, F0 complex, subunit B, bacterial; HAMAP: ATPase, F0 complex, subunit B/B', bacterial/chloroplast; KEGG: smd:Smed_0450 F0F1 ATP synthase subunit B; PFAM: ATPase, F0 complex, subunit B/B', bacterial/chloroplast
YP_005712637.1	KEGG: smd:Smed_0451 ribonuclease HII; PFAM: Ribonuclease HII/HIII
YP_005712638.1	KEGG: smd:Smed_0452 radical SAM domain-containing protein; PFAM: Radical SAM; SMART: Elongator protein 3/MiaB/NifB
YP_005712639.1	KEGG: smd:Smed_0453 hypothetical protein
YP_005712640.1	KEGG: smd:Smed_0454 hypothetical protein
YP_005712641.1	TIGRFAM: Molybdenum cofactor biosynthesis protein B, proteobacteria; Molybdenum cofactor synthesis; PFAM: Molybdopterin binding; KEGG: rhi:NGR_c04550 putative molybdenum cofactor biosynthesis protein; SMART: Molybdopterin binding
YP_005712642.1	TIGRFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; KEGG: smd:Smed_0456 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; PFAM: GHMP kinase; GHMP kinase, C-terminal
YP_005712643.1	PFAM: Tetratricopeptide TPR-1; KEGG: smd:Smed_0457 TPR repeat-containing protein
YP_005712644.1	PFAM: Polyprenyl synthetase; KEGG: smd:Smed_0458 polyprenyl synthetase
YP_005712645.1	PFAM: Protein of unknown function DUF2007; KEGG: smd:Smed_0459 hypothetical protein
YP_005712646.1	PFAM: Methyltransferase small; KEGG: smd:Smed_0460 methyltransferase small
YP_005712647.1	PFAM: Peptidase S49; KEGG: smd:Smed_0461 peptidase S49
YP_005712648.1	KEGG: smd:Smed_0462 hypothetical protein
YP_005712649.1	PFAM: Glycyl-tRNA synthetase, class IIc, alpha subunit; TIGRFAM: Glycyl-tRNA synthetase, class IIc, alpha subunit; HAMAP: Glycyl-tRNA synthetase, class IIc, alpha subunit; KEGG: smd:Smed_0463 glycyl-tRNA synthetase subunit alpha
YP_005712651.1	PFAM: LemA; KEGG: rhi:NGR_c04650 LemA family protein
YP_005712652.1	PFAM: Protein of unknown function DUF2207, membrane; KEGG: smd:Smed_0465 putative transmembrane signal peptide protein
YP_005712653.1	TIGRFAM: Glycyl-tRNA synthetase, class IIc, beta subunit; HAMAP: Glycyl-tRNA synthetase, class IIc, beta subunit; KEGG: smd:Smed_0466 glycyl-tRNA synthetase subunit beta
YP_005712654.1	PFAM: Domain of unknown function DUF523; KEGG: smd:Smed_0467 hypothetical protein
YP_005712655.1	KEGG: smd:Smed_0470 hypothetical protein
YP_005712656.1	TIGRFAM: Phosphoribosylglycinamide synthetase; KEGG: smd:Smed_0471 phosphoribosylamine--glycine ligase; PFAM: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; Phosphoribosylglycinamide synthetase, N-domain; Phosphoribosylglycinamide synthetase, C-domain
YP_005712657.1	TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; KEGG: smd:Smed_0472 diguanylate cyclase/phosphodiesterase; SMART: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted
YP_005712658.1	PFAM: Bacterial extracellular solute-binding, family 1; KEGG: smd:Smed_0473 extracellular solute-binding protein
YP_005712659.1	PFAM: Major facilitator superfamily MFS-1; KEGG: smd:Smed_0474 major facilitator transporter
YP_005712660.1	KEGG: smd:Smed_0475 AraC family transcriptional regulator; PFAM: HTH transcriptional regulator, AraC, arabinose-binding/dimerisation; HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain
YP_005712661.1	PFAM: MltA-interacting MipA; KEGG: smd:Smed_0476 MltA-interacting MipA family protein
YP_005712662.1	KEGG: smd:Smed_0477 4-hydroxybenzoate polyprenyltransferase; TIGRFAM: 4-hydroxybenzoate polyprenyl transferase; PFAM: UbiA prenyltransferase
YP_005712663.1	KEGG: smd:Smed_0478 hypothetical protein
YP_005712664.1	PFAM: Protein of unknown function DUF1217; KEGG: smd:Smed_0479 hypothetical protein
YP_005712665.1	KEGG: smd:Smed_0480 FAD linked oxidase domain-containing protein; PFAM: FAD-linked oxidase, C-terminal; FAD linked oxidase, N-terminal
YP_005712666.1	KEGG: smd:Smed_0481 SUA5/YciO/YrdC/YwlC family protein; TIGRFAM: Sua5/YciO/YrdC/YwlC; PFAM: Sua5/YciO/YrdC, N-terminal; SUA5
YP_005712667.1	KEGG: smd:Smed_0482 hypothetical protein
YP_005712668.1	PFAM: Rieske [2Fe-2S] iron-sulphur domain; KEGG: smd:Smed_0483 Rieske (2Fe-2S) domain-containing protein
YP_005712669.1	PFAM: Oxidoreductase FAD/NAD(P)-binding; Oxidoreductase, FAD-binding domain; Ferredoxin; KEGG: smd:Smed_0484 ferredoxin
YP_005712670.1	PFAM: Glycoside hydrolase, family 25; KEGG: smd:Smed_0485 glycoside hydrolase family protein
YP_005712671.1	PFAM: BA14K-like; KEGG: smd:Smed_0486 BA14K family protein
YP_005712672.1	PFAM: Mg2+ transporter protein, CorA-like; KEGG: rhi:NGR_c04890 putative cationic transport protein
YP_005712673.1	KEGG: smd:Smed_0487 acyl-CoA dehydrogenase domain-containing protein; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, central domain
YP_005712674.1	PFAM: Crotonase, core; KEGG: smd:Smed_0488 enoyl-CoA hydratase
YP_005712675.1	KEGG: smd:Smed_0489 methyl-accepting chemotaxis sensory transducer; PFAM: Chemotaxis methyl-accepting receptor, signalling; Cache; Chemotaxis methyl-accepting receptor, ligand-binding; HAMP linker domain; SMART: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain
YP_005712676.1	PFAM: (Uracil-5)-methyltransferase; KEGG: smd:Smed_0490 (uracil-5)-methyltransferase
YP_005712677.1	TIGRFAM: Haemolysin A; PFAM: RNA-binding S4; Ribosomal RNA methyltransferase RrmJ/FtsJ; KEGG: smd:Smed_0491 hemolysin A; SMART: RNA-binding S4
YP_005712678.1	KEGG: smd:Smed_0492 1-deoxy-D-xylulose-5-phosphate synthase; PFAM: Transketolase-like, pyrimidine-binding domain; Transketolase, C-terminal; TIGRFAM: Deoxyxylulose-5-phosphate synthase; HAMAP: Deoxyxylulose-5-phosphate synthase; SMART: Transketolase-like, pyrimidine-binding domain
YP_005712679.1	PFAM: Pirin, N-terminal; Pirin, C-terminal; KEGG: smd:Smed_0493 pirin domain-containing protein
YP_005712680.1	TIGRFAM: Exonuclease VII, small subunit; HAMAP: Exonuclease VII, small subunit; KEGG: smd:Smed_0495 exodeoxyribonuclease VII small subunit; PFAM: Exonuclease VII, small subunit
YP_005712681.1	PFAM: Histone deacetylase superfamily; KEGG: smd:Smed_0496 histone deacetylase superfamily protein
YP_005712682.1	KEGG: smd:Smed_0497 alcohol dehydrogenase; PFAM: Alcohol dehydrogenase GroES-like; SMART: Polyketide synthase, enoylreductase
YP_005712683.1	PFAM: Thioesterase superfamily; KEGG: smd:Smed_0498 thioesterase superfamily protein
YP_005712684.1	TIGRFAM: Thiolase; KEGG: smd:Smed_0499 acetyl-CoA acetyltransferase; PFAM: Thiolase, N-terminal; Thiolase, C-terminal
YP_005712685.1	KEGG: smd:Smed_0500 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase
YP_005712686.1	PFAM: BioY protein; KEGG: smd:Smed_0501 BioY protein
YP_005712687.1	PFAM: Cobalt transport protein; KEGG: smd:Smed_0502 cobalt transport protein
YP_005712688.1	PFAM: ABC transporter-like; KEGG: smd:Smed_0503 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_005712689.1	PFAM: Protein of unknown function DUF1006; KEGG: smd:Smed_0504 hypothetical protein
YP_005712690.1	PFAM: Peptidase U62, modulator of DNA gyrase; KEGG: smd:Smed_0505 peptidase U62 modulator of DNA gyrase
YP_005712691.1	KEGG: smd:Smed_0506 serine-type D-Ala-D-Ala carboxypeptidase; PFAM: Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal; Sporulation-related domain
YP_005712692.1	PFAM: Polysaccharide deacetylase; KEGG: smd:Smed_0507 polysaccharide deacetylase
YP_005712693.1	PFAM: Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain; Pyridoxine 5'-phosphate oxidase, dimerisation, C-terminal; TIGRFAM: Pyridoxamine 5'-phosphate oxidase; HAMAP: Pyridoxamine 5'-phosphate oxidase; KEGG: smd:Smed_0509 pyridoxamine 5'-phosphate oxidase
YP_005712694.1	KEGG: smd:Smed_0510 hypothetical protein
YP_005712695.1	KEGG: smd:Smed_0511 heat shock protein DnaJ domain-containing protein; PFAM: Heat shock protein DnaJ, N-terminal; Chaperone DnaJ, C-terminal; SMART: Heat shock protein DnaJ, N-terminal
YP_005712696.1	KEGG: smd:Smed_0512 enoyl-(acyl carrier protein) reductase; PFAM: Short-chain dehydrogenase/reductase SDR
YP_005712697.1	KEGG: smd:Smed_0513 phosphoglycerate mutase; PFAM: Histidine phosphatase superfamily, clade-1; SMART: Histidine phosphatase superfamily, clade-1
YP_005712698.1	PFAM: Protein of unknown function DUF1344; KEGG: smd:Smed_0514 hypothetical protein
YP_005712699.1	TIGRFAM: Chorismate synthase; KEGG: smd:Smed_0515 chorismate synthase; PFAM: Chorismate synthase
YP_005712700.1	TIGRFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB; HAMAP: 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB; KEGG: smd:Smed_0516 3,4-dihydroxy-2-butanone 4-phosphate synthase; PFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB; GTP cyclohydrolase II, RibA
YP_005712701.1	PFAM: Invasion associated locus B; KEGG: smd:Smed_0517 invasion associated locus B family protein
YP_005712702.1	TIGRFAM: Cytochrome c oxidase, subunit II; KEGG: smd:Smed_0518 cytochrome c oxidase subunit II; PFAM: Cytochrome c oxidase subunit II C-terminal; Cytochrome C oxidase subunit II, transmembrane domain
YP_005712703.1	KEGG: smd:Smed_0519 cytochrome c oxidase subunit I type; TIGRFAM: Cytochrome c oxidase, subunit I bacterial type; PFAM: Cytochrome c oxidase, subunit I
YP_005712704.1	TIGRFAM: Protohaem IX farnesyltransferase; HAMAP: Protohaem IX farnesyltransferase; KEGG: smd:Smed_0520 protoheme IX farnesyltransferase; PFAM: UbiA prenyltransferase
YP_005712705.1	KEGG: smd:Smed_0521 hypothetical protein
YP_005712706.1	KEGG: smd:Smed_0522 cytochrome c oxidase assembly protein; HAMAP: Cytochrome c oxidase assembly protein ctaG; PFAM: Cytochrome c oxidase assembly protein CtaG/Cox11
YP_005712707.1	PFAM: Cytochrome c oxidase, subunit III; KEGG: smd:Smed_0523 cytochrome c oxidase subunit III
YP_005712708.1	PFAM: Protein of unknown function DUF983; KEGG: smd:Smed_0525 hypothetical protein
YP_005712709.1	PFAM: Surfeit locus 1; KEGG: smd:Smed_0526 surfeit locus 1 family protein
YP_005712710.1	PFAM: LytB protein; TIGRFAM: LytB protein; HAMAP: LytB protein; KEGG: smd:Smed_0527 4-hydroxy-3-methylbut-2-enyl diphosphate reductase
YP_005712711.1	PFAM: Aminoglycoside phosphotransferase; TIGRFAM: Homoserine kinase ThrB; HAMAP: Homoserine kinase; KEGG: smd:Smed_0528 homoserine kinase
YP_005712712.1	KEGG: smd:Smed_0529 ribonuclease H; HAMAP: Ribonuclease H; PFAM: Ribonuclease H domain
YP_005712713.1	PFAM: Redoxin; KEGG: smd:Smed_0530 redoxin domain-containing protein
YP_005712714.1	KEGG: smd:Smed_0531 hypothetical protein
YP_005712715.1	KEGG: smd:Smed_0532 hypothetical protein; HAMAP: Protein of unknown function DUF179; PFAM: Protein of unknown function DUF179
YP_005712716.1	TIGRFAM: Diguanylate cyclase, predicted; PAS; PFAM: Diguanylate phosphodiesterase, EAL domain; 7TM-DISM receptor, extracellular domain, type 1; 7TM-DISM receptor, extracellular domain, type 2; PAS fold-3; Diguanylate cyclase, predicted; KEGG: smd:Smed_0533 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); SMART: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; PAC motif
YP_005712717.1	KEGG: smd:Smed_0534 GCN5-related N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase (GNAT) domain
YP_005712718.1	KEGG: smd:Smed_0535 processing peptidase; PFAM: Peptidase M16, N-terminal; Peptidase M16, C-terminal
YP_005712719.1	TIGRFAM: Threonine synthase; KEGG: smd:Smed_0536 threonine synthase; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit
YP_005712720.1	KEGG: smd:Smed_0537 hypothetical protein
YP_005712721.1	PFAM: Extracellular ligand-binding receptor; KEGG: smd:Smed_0538 extracellular ligand-binding receptor
YP_005712722.1	KEGG: smd:Smed_0539 HAD family hydrolase; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase-like hydrolase
YP_005712723.1	KEGG: smd:Smed_0540 regulatory protein ArsR; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR
YP_005712724.1	PFAM: DNA methylase N-4/N-6; KEGG: smd:Smed_0541 DNA methylase N-4/N-6 domain-containing protein
YP_005712725.1	KEGG: smd:Smed_0542 HAD family hydrolase; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase-like hydrolase
YP_005712726.1	TIGRFAM: A/G-specific adenine glycosylase MutY, bacterial form; PFAM: HhH-GPD domain; Endonuclease III-like, iron-sulphur cluster loop motif; KEGG: smd:Smed_0543 A/G-specific adenine glycosylase; SMART: HhH-GPD domain
YP_005712727.1	PFAM: Protein of unknown function DUF721/UPF0232; KEGG: smd:Smed_0544 hypothetical protein
YP_005712728.1	PFAM: DSBA-like thioredoxin domain; KEGG: smd:Smed_0545 DsbA oxidoreductase
YP_005712729.1	TIGRFAM: Chromosome segregation protein SMC; PFAM: RecF/RecN/SMC; SMCs flexible hinge; KEGG: smd:Smed_0547 chromosome segregation protein SMC; SMART: SMCs flexible hinge
YP_005712730.1	TIGRFAM: Pyruvate, phosphate dikinase; KEGG: smd:Smed_0548 pyruvate phosphate dikinase; PFAM: Pyruvate phosphate dikinase, PEP/pyruvate-binding; PEP-utilising enzyme, mobile domain; PEP-utilising enzyme
YP_005712731.1	KEGG: smd:Smed_0549 hypothetical protein
YP_005712732.1	KEGG: smd:Smed_0550 hypothetical protein
YP_005712733.1	KEGG: smd:Smed_0551 hypothetical protein
YP_005712734.1	KEGG: smd:Smed_0552 beta-lactamase domain-containing protein; PFAM: Beta-lactamase-like; SMART: Beta-lactamase-like
YP_005712735.1	PFAM: Mechanosensitive ion channel MscS; KEGG: smd:Smed_0553 MscS mechanosensitive ion channel
YP_005712736.1	KEGG: smd:Smed_0554 hypothetical protein
YP_005712737.1	KEGG: smd:Smed_0555 hypothetical protein
YP_005712738.1	PFAM: Protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, domain 2; TIGRFAM: Sulphate adenylyltransferase, large subunit; Small GTP-binding protein; HAMAP: Sulphate adenylyltransferase, large subunit; KEGG: smd:Smed_0557 sulfate adenylyltransferase subunit 1
YP_005712739.1	PFAM: Phosphoadenosine phosphosulphate reductase; TIGRFAM: Sulphate adenylyltransferase, small subunit; HAMAP: Sulphate adenylyltransferase, small subunit; KEGG: rhi:NGR_c06950 sulfate adenylyltransferase subunit 2
YP_005712740.1	PFAM: Phosphoadenosine phosphosulphate reductase; TIGRFAM: Adenylylsulphate reductase, thioredoxin dependent; HAMAP: Phosphoadenosine phosphosulphate reductase CysH-type; KEGG: smd:Smed_0559 adenylylsulfate reductase, thioredoxin dependent
YP_005712741.1	KEGG: smd:Smed_0560 hypothetical protein
YP_005712742.1	KEGG: smd:Smed_0561 hypothetical protein
YP_005712743.1	PFAM: Glucose-methanol-choline oxidoreductase, N-terminal; Glucose-methanol-choline oxidoreductase, C-terminal; TIGRFAM: Choline dehydrogenase; HAMAP: Choline dehydrogenase; KEGG: smd:Smed_0562 choline dehydrogenase
YP_005712744.1	PFAM: Aldehyde dehydrogenase domain; TIGRFAM: Betaine aldehyde dehydrogenase; HAMAP: Betaine aldehyde dehydrogenase; KEGG: smd:Smed_0563 betaine aldehyde dehydrogenase
YP_005712745.1	TIGRFAM: Choline-sulfatase; KEGG: smd:Smed_0564 sulfatase; PFAM: Sulfatase
YP_005712746.1	KEGG: smd:Smed_0565 transcriptional regulator BetI; TIGRFAM: Transcriptional repressor BetI; PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal
YP_005712747.1	KEGG: smd:Smed_0566 hypothetical protein
YP_005712748.1	KEGG: smd:Smed_0567 diguanylate cyclase/phosphodiesterase; PFAM: Diguanylate phosphodiesterase, EAL domain; Cystathionine beta-synthase, core; Diguanylate cyclase, predicted; SMART: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted
YP_005712749.1	SMART: Polyketide synthase, enoylreductase; TIGRFAM: Quinone oxidoreductase putative, PIG3; KEGG: smd:Smed_0568 quinone oxidoreductase putative PIG3; PFAM: Alcohol dehydrogenase, C-terminal; Alcohol dehydrogenase GroES-like
YP_005712750.1	PFAM: Protein of unknown function DUF3750; KEGG: smd:Smed_0569 hypothetical protein
YP_005712751.1	PFAM: L-asparaginase II; KEGG: smd:Smed_0570 L-asparaginase II
YP_005712752.1	PFAM: Glutathione S-transferase, N-terminal; Glutathione S-transferase, C-terminal; KEGG: smd:Smed_0571 glutathione S-transferase domain-containing protein
YP_005712753.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: smd:Smed_0572 LysR family transcriptional regulator
YP_005712754.1	PFAM: Glutathione S-transferase, C-terminal; Glutathione S-transferase, N-terminal; KEGG: smd:Smed_0573 glutathione S-transferase domain-containing protein
YP_005712755.1	TIGRFAM: Diguanylate cyclase, predicted; PAS; PFAM: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; PAS fold-4; GAF; KEGG: smd:Smed_0574 diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s); SMART: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; GAF
YP_005712756.1	PFAM: YkuD domain; KEGG: smd:Smed_0575 ErfK/YbiS/YcfS/YnhG family protein
YP_005712757.1	KEGG: smd:Smed_0576 transcriptional regulator, TrmB; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR
YP_005712758.1	KEGG: smd:Smed_0577 OsmC family protein; TIGRFAM: Peroxiredoxin, organic hydroperoxide resistance-related; PFAM: Peroxiredoxin, OsmC-like protein
YP_005712759.1	PFAM: PhnA protein, C-terminal; KEGG: rhi:NGR_c07170 PhnA-like protein
YP_005712760.1	PFAM: Protein of unknown function DUF853, nucleotide triphosphate hydrolase, putative; KEGG: smd:Smed_0578 protein of unknown function DUF853 NPT hydrolase putative
YP_005712761.1	KEGG: smd:Smed_0579 hypothetical protein
YP_005712762.1	KEGG: smd:Smed_0580 aldo/keto reductase; PFAM: NADP-dependent oxidoreductase domain
YP_005712763.1	HAMAP: Trans-aconitate 2-methyltransferase; KEGG: smd:Smed_0581 trans-aconitate 2-methyltransferase; PFAM: Methyltransferase type 11
YP_005712764.1	TIGRFAM: Haloacid dehalogenase, type II; HAD-superfamily hydrolase, subfamily IA, variant 2; KEGG: smd:Smed_0582 haloacid dehalogenase, type II; PFAM: Haloacid dehalogenase-like hydrolase
YP_005712765.1	KEGG: smd:Smed_0583 hypothetical protein
YP_005712766.1	PFAM: Alcohol dehydrogenase, C-terminal; Alcohol dehydrogenase GroES-like; KEGG: smd:Smed_0584 alcohol dehydrogenase; SMART: Polyketide synthase, enoylreductase
YP_005712767.1	PFAM: Aminotransferase, class IV; KEGG: smd:Smed_0585 aminotransferase
YP_005712768.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: smd:Smed_0586 glyoxalase/bleomycin resistance protein/dioxygenase
YP_005712769.1	PFAM: Manganese/iron superoxide dismutase, C-terminal; Manganese/iron superoxide dismutase, N-terminal; KEGG: smd:Smed_0587 superoxide dismutase
YP_005712770.1	KEGG: smd:Smed_0588 helix-turn-helix type 11 domain-containing protein
YP_005712771.1	PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: smd:Smed_0589 lysine exporter protein LysE/YggA
YP_005712772.1	PFAM: Cytochrome c, class II; KEGG: smd:Smed_0590 cytochrome c class II
YP_005712773.1	KEGG: smd:Smed_0591 gluconate 2-dehydrogenase (acceptor)
YP_005712774.1	PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: smd:Smed_0592 GCN5-related N-acetyltransferase
YP_005712775.1	KEGG: smd:Smed_0593 MerR family transcriptional regulator; PFAM: Transcription regulator MerR, DNA binding; HTH transcriptional regulator, MerR; SMART: HTH transcriptional regulator, MerR
YP_005712776.1	KEGG: smd:Smed_0594 beta-lactamase; PFAM: Beta-lactamase-related
YP_005712777.1	SMART: Pyrrolo-quinoline quinone beta-propeller repeat; TIGRFAM: PQQ-dependent membrane bound dehydrogenase, glucose/quinate/shikimate-related; KEGG: smd:Smed_0595 quinoprotein glucose dehydrogenase; PFAM: PQQ-dependent enzyme, N-terminal; Pyrrolo-quinoline quinone repeat; PQQ-dependent enzyme, C-terminal
YP_005712778.1	PFAM: Uncharacterised protein family UPF0061; KEGG: smd:Smed_0596 hypothetical protein
YP_005712779.1	PFAM: Protein of unknown function DUF1697; KEGG: smd:Smed_0598 hypothetical protein
YP_005712780.1	KEGG: smd:Smed_0599 oligopeptidase B
YP_005712781.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: smd:Smed_0602 glyoxalase/bleomycin resistance protein/dioxygenase
YP_005712782.1	PFAM: UspA; KEGG: rhi:NGR_c07450 hypothetical protein
YP_005712783.1	KEGG: smd:Smed_0604 TraR/DksA family transcriptional regulator
YP_005712784.1	PFAM: Hly-III-related; KEGG: smd:Smed_0605 Hly-III family protein
YP_005712785.1	KEGG: smd:Smed_0606 hypothetical protein
YP_005712786.1	PFAM: Methionine sulphoxide reductase B; TIGRFAM: Methionine sulphoxide reductase B; HAMAP: Methionine sulphoxide reductase B; KEGG: rhi:NGR_c07490 peptide methionine sulfoxide reductase MsrB 3
YP_005712787.1	KEGG: smd:Smed_0607 putative monovalent cation/H+ antiporter subunit A; PFAM: NADH:ubiquinone/plastoquinone oxidoreductase; NADH:ubiquinone oxidoreductase, chain 5/L, N-terminal
YP_005712788.1	PFAM: Na+/H+ antiporter MnhB subunit-related protein; KEGG: smd:Smed_0608 putative monovalent cation/H+ antiporter subunit B
YP_005712789.1	PFAM: NADH-ubiquinone oxidoreductase chain 4L/K; KEGG: smd:Smed_0609 putative monovalent cation/H+ antiporter subunit C
YP_005712790.1	KEGG: smd:Smed_0610 putative monovalent cation/H+ antiporter subunit D; PFAM: NADH:ubiquinone/plastoquinone oxidoreductase
YP_005712791.1	PFAM: cation antiporter; KEGG: smd:Smed_0611 putative monovalent cation/H+ antiporter subunit E
YP_005712792.1	PFAM: Multiple resistance and pH regulation protein F; KEGG: smd:Smed_0612 putative monovalent cation/H+ antiporter subunit F
YP_005712793.1	KEGG: smd:Smed_0613 putative monovalent cation/H+ antiporter subunit G; TIGRFAM: Na+/H+ antiporter subunit; PFAM: Na+/H+ antiporter subunit
YP_005712794.1	PFAM: ROSMUCR transcriptional regulator; KEGG: smd:Smed_0614 MucR family transcriptional regulator
YP_005712795.1	PFAM: Fe-S metabolism associated SufE; KEGG: smd:Smed_0615 Fe-S metabolism associated SufE
YP_005712796.1	KEGG: smd:Smed_0616 hypothetical protein
YP_005712797.1	KEGG: smd:Smed_0617 histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; PAS fold-4; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain
YP_005712798.1	PFAM: Peptidoglycan binding-like; KEGG: smd:Smed_0618 peptidoglycan binding domain-containing protein
YP_005712799.1	PFAM: Protein of unknown function DUF1491; KEGG: smd:Smed_0619 hypothetical protein
YP_005712800.1	PFAM: Protein of unknown function DUF2336; KEGG: smd:Smed_0620 hypothetical protein
YP_005712801.1	KEGG: smd:Smed_0621 SH3 type 3 domain-containing protein; PFAM: SH3, type 3; SMART: SH3-like domain, bacterial
YP_005712802.1	KEGG: smd:Smed_0622 hypothetical protein
YP_005712804.1	KEGG: smd:Smed_0623 hypothetical protein
YP_005712805.1	KEGG: smd:Smed_0624 hypothetical protein
YP_005712806.1	PFAM: Domain of unknown function DUF1214; KEGG: smd:Smed_0625 hypothetical protein
YP_005712807.1	TIGRFAM: Penicillin-binding protein 1A; KEGG: smd:Smed_0626 1A family penicillin-binding protein; PFAM: Glycosyl transferase, family 51; Penicillin-binding protein, transpeptidase
YP_005712808.1	KEGG: smd:Smed_0627 hypothetical protein; HAMAP: Uncharacterised conserved protein UCP006173; PFAM: Uncharacterised protein family UPF0153
YP_005712809.1	PFAM: Reverse transcriptase; Group II intron, maturase-specific; KEGG: rhi:NGR_b07990 putative reverse transcriptase/maturase
YP_005712810.1	KEGG: smd:Smed_6023 transposase
YP_005712811.1	KEGG: rhi:NGR_c07720 hypothetical protein
YP_005712814.1	KEGG: smd:Smed_0629 putative signal peptide protein
YP_005712815.1	KEGG: smd:Smed_0630 two component transcriptional regulator; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal
YP_005712816.1	KEGG: smd:Smed_0631 integral membrane sensor signal transduction histidine kinase; PFAM: ATPase-like, ATP-binding domain; HAMP linker domain; SMART: ATPase-like, ATP-binding domain
YP_005712817.1	KEGG: smd:Smed_0632 putative outer-membranne lipoprotein
YP_005712818.1	TIGRFAM: Cytochrome c-type biogenesis protein CcmI; KEGG: smd:Smed_0633 cytochrome c-type biogenesis transmembrane protein
YP_005712819.1	KEGG: smd:Smed_0634 cytochrome c-type biogenesis protein CcmE; HAMAP: CcmE/CycJ protein; PFAM: CcmE/CycJ protein
YP_005712820.1	KEGG: smd:Smed_0635 cytochrome c-type biogenesis protein CcmF; TIGRFAM: Cytochrome c-type biogenesis protein CcmF; PFAM: Cytochrome c assembly protein
YP_005712821.1	PFAM: Cytochrome C biogenesis protein CcmH; KEGG: smd:Smed_0636 cytochrome c biogenesis protein
YP_005712822.1	SMART: PDZ/DHR/GLGF; TIGRFAM: Peptidase S1C, Do; KEGG: smd:Smed_0637 protease Do; PFAM: Peptidase S1/S6, chymotrypsin/Hap; PDZ/DHR/GLGF
YP_005712823.1	KEGG: smd:Smed_0638 two component transcriptional regulator; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal
YP_005712824.1	KEGG: smd:Smed_0639 integral membrane sensor signal transduction histidine kinase; PFAM: ATPase-like, ATP-binding domain; HAMP linker domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; HAMP linker domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain
YP_005712825.1	HAMAP: Glutamate-ammonia-ligase adenylyltransferase; KEGG: smd:Smed_0640 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase; PFAM: Glutamate-ammonia ligase adenylyltransferase, repeated domain; PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase
YP_005712826.1	TIGRFAM: PAS; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; PAS fold-3; KEGG: smd:Smed_0641 multi-sensor signal transduction histidine kinase; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; PAC motif
YP_005712827.1	TIGRFAM: Peptidase M1, alanyl aminopeptidase; KEGG: smd:Smed_0642 aminopeptidase N; PFAM: Peptidase M1, membrane alanine aminopeptidase, N-terminal
YP_005712828.1	PFAM: Drug/metabolite transporter; KEGG: smd:Smed_0643 hypothetical protein
YP_005712829.1	PFAM: Major facilitator superfamily MFS-1; KEGG: smd:Smed_0644 major facilitator transporter
YP_005712831.1	KEGG: smd:Smed_0645 hypothetical protein
YP_005712832.1	KEGG: rhi:NGR_c07910 hypothetical protein
YP_005712833.1	KEGG: smd:Smed_0647 phage SPO1 DNA polymerase-related protein; TIGRFAM: Phage SPO1 DNA polymerase-related protein; PFAM: Uracil-DNA glycosylase-like
YP_005712834.1	KEGG: smd:Smed_0648 putative heat shock protein
YP_005712835.1	KEGG: smd:Smed_0649 electron-transferring-flavoprotein dehydrogenase; PFAM: Electron transfer flavoprotein-ubiquinone oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase
YP_005712836.1	PFAM: ABC-type glycine betaine transport system, substrate-binding domain; KEGG: smd:Smed_0650 substrate-binding region of ABC-type glycine betaine transport system
YP_005712837.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_0651 binding-protein-dependent transport systems inner membrane component
YP_005712838.1	SMART: Polyketide synthase, enoylreductase; TIGRFAM: Alcohol dehydrogenase, zinc-binding type 1; KEGG: smd:Smed_0652 zinc-binding alcohol dehydrogenase; PFAM: Alcohol dehydrogenase, C-terminal; Alcohol dehydrogenase GroES-like
YP_005712839.1	PFAM: Helix-turn-helix, HxlR type; KEGG: smd:Smed_0653 HxlR family transcriptional regulator
YP_005712840.1	PFAM: Diacylglycerol kinase, catalytic domain; KEGG: smd:Smed_0654 diacylglycerol kinase catalytic region
YP_005712841.1	KEGG: smd:Smed_0655 glycosyl transferase family protein
YP_005712842.1	PFAM: Glycosyl transferase, family 2; KEGG: smd:Smed_0656 glycosyl transferase family protein
YP_005712843.1	KEGG: smd:Smed_0657 hypothetical protein
YP_005712844.1	TIGRFAM: AMP nucleosidase; KEGG: smd:Smed_0658 AMP nucleosidase; PFAM: AMP nucleoside phosphorylase, N-terminal; Nucleoside phosphorylase domain
YP_005712845.1	KEGG: smd:Smed_0659 hypothetical protein; HAMAP: Uncharacterised protein family UPF0060; PFAM: Uncharacterised protein family UPF0060
YP_005712846.1	KEGG: smd:Smed_0660 hypothetical protein
YP_005712847.1	KEGG: smd:Smed_0661 hypothetical protein
YP_005712848.1	PFAM: Glutathione S-transferase, N-terminal; Glutathione S-transferase, C-terminal; KEGG: smd:Smed_0662 glutathione S-transferase domain-containing protein
YP_005712849.1	PFAM: Protein of unknown function DUF2147; KEGG: smd:Smed_0663 hypothetical protein
YP_005712850.1	PFAM: Sel1-like; KEGG: smd:Smed_0664 Sel1 domain-containing protein
YP_005712851.1	KEGG: smd:Smed_0665 histidinol-phosphate aminotransferase; PFAM: Aminotransferase, class I/classII
YP_005712852.1	TIGRFAM: Addiction module antidote protein, HigA; PFAM: Helix-turn-helix type 3; KEGG: xau:Xaut_2649 XRE family plasmid maintenance system antidote protein; SMART: Helix-turn-helix type 3
YP_005712853.1	PFAM: Plasmid maintenance system killer; KEGG: xau:Xaut_2650 plasmid maintenance system killer
YP_005712855.1	PFAM: Porin, alpha proteobacteria type; KEGG: smd:Smed_0668 porin
YP_005712856.1	PFAM: Integrase, catalytic core, phage; KEGG: smd:Smed_0669 phage integrase family protein
YP_005712857.1	PFAM: Porin, alpha proteobacteria type; KEGG: smd:Smed_0670 porin
YP_005712858.1	PFAM: BA14K-like; KEGG: smd:Smed_0671 BA14K family protein
YP_005712859.1	PFAM: Lytic transglycosylase-like, catalytic; KEGG: smd:Smed_0672 lytic transglycosylase catalytic
YP_005712860.1	PFAM: Dihydrodipicolinate synthetase; TIGRFAM: Dihydrodipicolinate synthase subfamily; HAMAP: Dihydrodipicolinate synthase; KEGG: smd:Smed_0673 dihydrodipicolinate synthase
YP_005712861.1	TIGRFAM: SsrA-binding protein; HAMAP: SsrA-binding protein; KEGG: smd:Smed_0674 SsrA-binding protein; PFAM: SsrA-binding protein
YP_005712863.1	PFAM: Domain of unknown function DUF88; KEGG: rhi:NGR_c08220 hypothetical protein
YP_005712864.1	TIGRFAM: DNA-directed RNA polymerase, omega subunit; HAMAP: DNA-directed RNA polymerase, omega subunit; KEGG: smd:Smed_0676 DNA-directed RNA polymerase subunit omega; PFAM: RNA polymerase, subunit omega/K/RPABC2
YP_005712865.1	SMART: RelA/SpoT; Metal-dependent phosphohydrolase, HD domain; TIGRFAM: RelA/SpoT protein; KEGG: smd:Smed_0677 (p)ppGpp synthetase I, SpoT/RelA; PFAM: RelA/SpoT; Metal-dependent phosphohydrolase, HD subdomain; TGS; Amino acid-binding ACT
YP_005712866.1	TIGRFAM: Transcription regulator AbrB; PFAM: Transcription regulator AbrB/SpoV, predicted; KEGG: rhi:NGR_b23590 hypothetical protein; SMART: Transcription regulator AbrB/SpoV, predicted
YP_005712867.1	KEGG: rhi:NGR_b23580 putative nucleic acid-binding protein
YP_005712868.1	KEGG: smd:Smed_0678 hypothetical protein
YP_005712869.1	PFAM: Protein of unknown function DUF2062; KEGG: smd:Smed_0679 hypothetical protein
YP_005712870.1	TIGRFAM: Phosphopantethiene-protein transferase; Holo-[acyl carrier protein] synthase; HAMAP: Holo-[acyl carrier protein] synthase; KEGG: rhi:NGR_c08270 4'-phosphopantetheinyl transferase; PFAM: 4'-phosphopantetheinyl transferase
YP_005712871.1	TIGRFAM: Peptidase S26A, signal peptidase I; KEGG: smd:Smed_0681 signal peptidase I; PFAM: Peptidase S24/S26A/S26B, conserved region
YP_005712872.1	KEGG: smd:Smed_0682 ribonuclease III; PFAM: Ribonuclease III; Double-stranded RNA-binding; TIGRFAM: Ribonuclease III, bacterial; HAMAP: Ribonuclease III, bacterial; SMART: Ribonuclease III; Double-stranded RNA-binding
YP_005712873.1	TIGRFAM: GTP-binding protein Era; Small GTP-binding protein; HAMAP: GTP-binding protein Era; KEGG: smd:Smed_0683 GTP-binding protein Era; PFAM: GTP-binding protein, HSR1-related; K Homology, type 2
YP_005712874.1	KEGG: atu:Atu5322 hypothetical protein; TIGRFAM: Arsenate resistance ArsH; PFAM: NADPH-dependent FMN reductase
YP_005712875.1	KEGG: rhi:NGR_b21790 arsenate reductase; TIGRFAM: Arsenate reductase; PFAM: Arsenate reductase-like
YP_005712876.1	PFAM: Major intrinsic protein; KEGG: rhi:NGR_b21800 putative glycerol uptake transporter protein, MIP family
YP_005712877.1	KEGG: mes:Meso_4198 ArsR family transcriptional regulator; PFAM: Transcription regulator Rrf2; SMART: HTH transcriptional regulator, ArsR
YP_005712878.1	PFAM: Glycerophosphoryl diester phosphodiesterase; KEGG: smd:Smed_0684 glycerophosphoryl diester phosphodiesterase
YP_005712879.1	KEGG: smd:Smed_0685 cyclopropane-fatty-acyl-phospholipid synthase; PFAM: Cyclopropane-fatty-acyl-phospholipid/mycolic acid synthase
YP_005712880.1	KEGG: smd:Smed_0686 RNA-binding S1 domain-containing protein; PFAM: Tex-like protein, N-terminal; Ribosomal protein S1, RNA-binding domain; SMART: Resolvase, RNase H-like fold; RNA-binding domain, S1
YP_005712881.1	KEGG: smd:Smed_0687 putative signal peptide protein
YP_005712882.1	TIGRFAM: Nucleotide sugar dehydrogenase; KEGG: smd:Smed_0688 UDP-glucose 6-dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase, N-terminal; UDP-glucose/GDP-mannose dehydrogenase, dimerisation; UDP-glucose/GDP-mannose dehydrogenase, C-terminal
YP_005712883.1	KEGG: smd:Smed_0689 NAD-dependent epimerase/dehydratase; PFAM: NAD-dependent epimerase/dehydratase
YP_005712884.1	SMART: HTH transcriptional regulator, ArsR; KEGG: smd:Smed_0690 regulatory protein ArsR
YP_005712885.1	PFAM: Activator of Hsp90 ATPase homologue 1-like; KEGG: smd:Smed_0691 activator of HSP90 ATPase 1 family protein
YP_005712886.1	KEGG: smd:Smed_0692 hypothetical protein
YP_005712887.1	PFAM: YkuD domain; KEGG: rhi:NGR_c08420 hypothetical protein
YP_005712888.1	TIGRFAM: Recombination protein O, RecO; HAMAP: Recombination protein O, RecO; KEGG: smd:Smed_0693 DNA repair protein RecO; PFAM: Recombination protein O, RecO
YP_005712889.1	PFAM: Protein of unknown function DUF839; KEGG: smd:Smed_0694 hypothetical protein
YP_005712890.1	PFAM: Protein of unknown function DUF2339, transmembrane; KEGG: smd:Smed_0695 hypothetical protein
YP_005712891.1	KEGG: smd:Smed_0696 metal dependent phosphohydrolase; PFAM: Metal-dependent phosphohydrolase, HD subdomain; SMART: Metal-dependent phosphohydrolase, HD domain
YP_005712892.1	PFAM: Molybdenum cofactor sulfurase, C-terminal; MOSC, N-terminal beta barrel; KEGG: smd:Smed_0697 MOSC domain-containing protein
YP_005712893.1	PFAM: Major facilitator superfamily MFS-1; KEGG: smd:Smed_0698 major facilitator transporter
YP_005712894.1	PFAM: Quinolinate synthetase A; TIGRFAM: Quinolinate synthetase A; HAMAP: Quinolinate synthase A, type 2; KEGG: smd:Smed_0699 quinolinate synthetase
YP_005712895.1	TIGRFAM: L-aspartate oxidase; KEGG: smd:Smed_0700 L-aspartate oxidase; PFAM: Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal; Fumarate reductase/succinate dehydrogenase flavoprotein, C-terminal
YP_005712896.1	TIGRFAM: Nicotinate-nucleotide pyrophosphorylase; KEGG: smd:Smed_0701 nicotinate-nucleotide pyrophosphorylase; PFAM: Quinolinate phosphoribosyl transferase, C-terminal domain; Quinolinate phosphoribosyl transferase, N-terminal
YP_005712897.1	PFAM: Superoxide dismutase, copper/zinc binding; KEGG: smd:Smed_0702 superoxide dismutase copper/zinc binding
YP_005712899.1	SMART: ATPase, AAA+ type, core; manually curated; KEGG: btr:Btr_0688 ABC transporter, ATP-binding protein; PFAM: ABC transporter-like; ABC transporter, transmembrane domain
YP_005712900.1	KEGG: btr:Btr_0687 putative transporter; TIGRFAM: Type I secretion membrane fusion protein, HlyD; PFAM: Secretion protein HlyD
YP_005712901.1	PFAM: RTX toxin-activating protein C, bacteria; KEGG: bgr:Bgr_05000 RTX toxin-activating protein
YP_005712902.1	KEGG: smd:Smed_0703 hypothetical protein
YP_005712903.1	KEGG: smd:Smed_0704 hypothetical protein
YP_005712904.1	KEGG: smd:Smed_0705 hypothetical protein
YP_005712905.1	KEGG: smd:Smed_0706 glycine cleavage T protein (aminomethyl transferase); TIGRFAM: Folate-binding, YgfZ; PFAM: Glycine cleavage T-protein, N-terminal; Glycine cleavage T-protein, C-terminal barrel
YP_005712906.1	KEGG: smd:Smed_0707 hypothetical protein
YP_005712907.1	KEGG: smd:Smed_0708 hypothetical protein
YP_005712908.1	KEGG: smd:Smed_0709 putative signal peptide protein; TIGRFAM: Conserved hypothetical protein CHP02301; PFAM: Conserved hypothetical protein CHP02301
YP_005712909.1	PFAM: NUDIX hydrolase domain; KEGG: smd:Smed_0710 NUDIX hydrolase
YP_005712910.1	PFAM: Protein of unknown function DUF159; KEGG: smd:Smed_0711 hypothetical protein
YP_005712911.1	KEGG: smd:Smed_0712 hypothetical protein
YP_005712912.1	SMART: Cysteinyl-tRNA synthetase, class Ia, DALR; TIGRFAM: Cysteinyl-tRNA synthetase, class Ia; KEGG: smd:Smed_0713 cysteinyl-tRNA synthetase; PFAM: Cysteinyl-tRNA synthetase, class Ia
YP_005712913.1	PFAM: Glutathione-dependent formaldehyde-activating, GFA; KEGG: smd:Smed_0714 glutathione-dependent formaldehyde-activating GFA
YP_005712914.1	PFAM: Glutathione-dependent formaldehyde-activating, GFA; KEGG: smd:Smed_0715 glutathione-dependent formaldehyde-activating GFA
YP_005712915.1	PFAM: Glutathione-dependent formaldehyde-activating, GFA; KEGG: smd:Smed_0716 glutathione-dependent formaldehyde-activating GFA
YP_005712916.1	KEGG: smd:Smed_0717 proline iminopeptidase; TIGRFAM: Peptidase S33, proline iminopeptidase 1; PFAM: Alpha/beta hydrolase fold-1
YP_005712917.1	SMART: 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain; TIGRFAM: 2-isopropylmalate synthase/homocitrate synthase-related; KEGG: smd:Smed_0718 putative alpha-isopropylmalate/homocitrate synthase family transferase; PFAM: 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain; Pyruvate carboxyltransferase
YP_005712918.1	KEGG: smd:Smed_0719 transporter DMT superfamily protein; TIGRFAM: RarD protein; PFAM: Drug/metabolite transporter
YP_005712919.1	KEGG: smd:Smed_0720 hypothetical protein; TIGRFAM: Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG; PFAM: Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG
YP_005712920.1	KEGG: smd:Smed_0721 peptidoglycan-binding LysM; PFAM: Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding Lysin subgroup
YP_005712921.1	PFAM: ABC transporter-like; ABC transporter, transmembrane domain; KEGG: smd:Smed_0722 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_005712922.1	PFAM: Phosphatidylserine decarboxylase-related; TIGRFAM: Phosphatidylserine decarboxylase-related protein; HAMAP: Phosphatidylserine decarboxylase-related protein; KEGG: smd:Smed_0723 phosphatidylserine decarboxylase
YP_005712923.1	KEGG: smd:Smed_0724 CDP-diacylglycerol--serine O-phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol--serine O-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase
YP_005712924.1	PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: smd:Smed_0726 short-chain dehydrogenase/reductase SDR
YP_005712925.1	TIGRFAM: Amidophosphoribosyl transferase; KEGG: rhi:NGR_c08750 amidophosphoribosyltransferase; PFAM: Glutamine amidotransferase, class-II; Phosphoribosyltransferase
YP_005712926.1	PFAM: Colicin V production, CvpA; KEGG: smd:Smed_0728 colicin V production protein
YP_005712927.1	KEGG: smd:Smed_0729 DNA repair protein RadA; TIGRFAM: DNA repair protein RadA; SMART: ATPase, AAA+ type, core
YP_005712928.1	PFAM: Alanine racemase, N-terminal; Alanine racemase, C-terminal; TIGRFAM: Alanine racemase; HAMAP: Alanine racemase; KEGG: smd:Smed_0730 alanine racemase
YP_005712929.1	KEGG: smd:Smed_0731 AraC family transcriptional regulator; PFAM: HTH transcriptional regulator, AraC, arabinose-binding/dimerisation; HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain
YP_005712930.1	KEGG: smd:Smed_0732 AzlC family protein; manually curated; PFAM: Branched-chain amino acid transport, permease
YP_005712931.1	PFAM: Branched-chain amino acid transport, AzlD; KEGG: smd:Smed_0733 branched-chain amino acid transport
YP_005712932.1	TIGRFAM: DNA helicase, DnaB type; PFAM: DNA helicase, DnaB-like, C-terminal; DNA helicase, DnaB-like, N-terminal; KEGG: smd:Smed_0734 replicative DNA helicase; SMART: ATPase, AAA+ type, core
YP_005712933.1	KEGG: smd:Smed_0735 MarR family transcriptional regulator; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR
YP_005712934.1	PFAM: Major facilitator superfamily MFS-1; KEGG: smd:Smed_0736 major facilitator transporter
YP_005712935.1	PFAM: Secretion protein HlyD; KEGG: smd:Smed_0737 secretion protein HlyD family protein
YP_005712936.1	TIGRFAM: Ribosomal protein L9, bacteria/chloroplast; HAMAP: Ribosomal protein L9, bacteria/chloroplast; KEGG: smd:Smed_0738 50S ribosomal protein L9; PFAM: Ribosomal protein L9, C-terminal; Ribosomal protein L9, N-terminal
YP_005712937.1	KEGG: smd:Smed_0739 hypothetical protein
YP_005712938.1	TIGRFAM: Ribosomal protein S18; HAMAP: Ribosomal protein S18; KEGG: smd:Smed_0740 30S ribosomal protein S18; PFAM: Ribosomal protein S18
YP_005712939.1	TIGRFAM: Ribosomal protein S6; HAMAP: Ribosomal protein S6, plastid/chloroplast; KEGG: rhi:NGR_c08870 30S ribosomal protein S6; PFAM: Ribosomal protein S6
YP_005712940.1	KEGG: smd:Smed_0742 hypothetical protein
YP_005712941.1	PFAM: NADP-dependent oxidoreductase domain; KEGG: smd:Smed_0743 aldo/keto reductase
YP_005712942.1	TIGRFAM: Malonyl CoA-acyl carrier protein transacylase; KEGG: rhi:NGR_c08900 malonyl-CoA:acyl carrier protein transacylase; PFAM: Acyl transferase
YP_005712943.1	TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: smd:Smed_0745 3-ketoacyl-(acyl-carrier-protein) reductase NodG; SMART: Polyketide synthase/Fatty acid synthase, KR
YP_005712944.1	TIGRFAM: Acyl carrier protein (ACP); HAMAP: Acyl carrier protein (ACP); KEGG: rhi:NGR_c08920 acyl carrier protein; PFAM: Phosphopantetheine-binding
YP_005712945.1	TIGRFAM: 3-oxoacyl-[acyl-carrier-protein] synthase 2; KEGG: smd:Smed_0747 3-oxoacyl-(acyl carrier protein) synthase II; PFAM: Beta-ketoacyl synthase, N-terminal; Beta-ketoacyl synthase, C-terminal
YP_005712946.1	KEGG: smd:Smed_0748 aminodeoxychorismate lyase; TIGRFAM: Uncharacterised protein family UPF0755; PFAM: Uncharacterised protein family UPF0755
YP_005712947.1	KEGG: smd:Smed_0758 hypothetical protein; TIGRFAM: Conserved hypothetical protein CHP00255; PFAM: YicC-like, N-terminal; Domain of unknown function DUF1732
YP_005712948.1	KEGG: smd:Smed_0759 guanylate kinase; PFAM: Guanylate kinase; TIGRFAM: Guanylate kinase, sub-group; HAMAP: Guanylate kinase, sub-group; SMART: Guanylate kinase/L-type calcium channel
YP_005712949.1	SMART: Ribosomal RNA adenine methylase transferase, N-terminal; TIGRFAM: Ribosomal RNA adenine dimethylase; KEGG: smd:Smed_0760 dimethyladenosine transferase; HAMAP: Ribosomal RNA adenine dimethylase; PFAM: Ribosomal RNA adenine methylase transferase
YP_005712950.1	PFAM: Pyridoxal phosphate (active vitamin B6) biosynthesis PdxA; TIGRFAM: Pyridoxal phosphate (active vitamin B6) biosynthesis PdxA; HAMAP: Pyridoxal phosphate (active vitamin B6) biosynthesis PdxA; KEGG: smd:Smed_0761 4-hydroxythreonine-4-phosphate dehydrogenase
YP_005712951.1	PFAM: SurA N-terminal; KEGG: smd:Smed_0762 SurA domain-containing protein
YP_005712952.1	PFAM: Organic solvent tolerance protein, C-terminal; KEGG: smd:Smed_0763 organic solvent tolerance protein
YP_005712953.1	PFAM: Permease YjgP/YjgQ, predicted; KEGG: smd:Smed_0764 permease YjgP/YjgQ family protein
YP_005712954.1	PFAM: Permease YjgP/YjgQ, predicted; KEGG: smd:Smed_0765 permease YjgP/YjgQ family protein
YP_005712955.1	HAMAP: Peptidase, M17, probable cytosol aminopeptidase; KEGG: smd:Smed_0766 leucyl aminopeptidase; PFAM: Peptidase M17, leucyl aminopeptidase, C-terminal; Peptidase M17, leucyl aminopeptidase, N-terminal
YP_005712956.1	PFAM: DNA polymerase III chi subunit, HolC; KEGG: smd:Smed_0767 DNA polymerase III subunit chi
YP_005712957.1	KEGG: smd:Smed_0768 galactose 1-dehydrogenase; PFAM: Oxidoreductase, N-terminal; Oxidoreductase, C-terminal
YP_005712958.1	PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: smd:Smed_0769 GCN5-related N-acetyltransferase
YP_005712959.1	KEGG: smd:Smed_0770 ABC transporter related; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core
YP_005712960.1	KEGG: smd:Smed_0771 hypothetical protein
YP_005712961.1	PFAM: AMP-dependent synthetase/ligase; KEGG: smd:Smed_0772 AMP-dependent synthetase and ligase
YP_005712962.1	PFAM: DinB; KEGG: smd:Smed_0773 DinB family protein
YP_005712963.1	PFAM: Glutathione S-transferase, C-terminal; Glutathione S-transferase, N-terminal; KEGG: rhi:NGR_c09120 putative lignin beta-ether hydrolase
YP_005712964.1	SMART: Nucleoside diphosphate kinase; HAMAP: Nucleoside diphosphate kinase; KEGG: smd:Smed_0775 nucleoside diphosphate kinase; PFAM: Nucleoside diphosphate kinase
YP_005712965.1	KEGG: smd:Smed_0776 hypothetical protein
YP_005712966.1	PFAM: Protein of unknown function DUF1470; KEGG: smd:Smed_0777 hypothetical protein
YP_005712967.1	PFAM: ABC transporter permease; KEGG: smd:Smed_0778 inner-membrane translocator
YP_005712968.1	PFAM: Molybdopterin biosynthesis MoaE; KEGG: smd:Smed_0779 molybdopterin biosynthesis MoaE protein
YP_005712969.1	KEGG: smd:Smed_0780 molybdopterin converting factor, subunit 1; TIGRFAM: Molybdopterin converting factor, subunit 1; PFAM: ThiamineS
YP_005712970.1	TIGRFAM: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; KEGG: rhi:NGR_c09190 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase
YP_005712971.1	TIGRFAM: Excinuclease ABC, C subunit; PFAM: Excinuclease ABC, C subunit, C-terminal; Excinuclease ABC, C subunit, N-terminal; UvrB/UvrC protein; KEGG: smd:Smed_0782 excinuclease ABC subunit C; SMART: Excinuclease ABC, C subunit, N-terminal; Helix-hairpin-helix DNA-binding motif, class 1
YP_005712972.1	PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: smd:Smed_0783 short chain dehydrogenase
YP_005712973.1	PFAM: Porin, alpha proteobacteria type; KEGG: smd:Smed_0784 porin
YP_005712974.1	PFAM: Glutathione S-transferase, N-terminal; KEGG: rhi:NGR_c09230 glutathione S-transferase-like protein
YP_005712975.1	PFAM: Ribonuclease T2; KEGG: smd:Smed_0786 ribonuclease T2
YP_005712976.1	KEGG: smd:Smed_0787 putative signal peptide protein
YP_005712977.1	PFAM: Protein of unknown function DUF519; KEGG: smd:Smed_0788 hypothetical protein
YP_005712978.1	PFAM: Molybdopterin oxidoreductase; Molydopterin dinucleotide-binding domain; Molybdopterin oxidoreductase, Fe4S4 domain; KEGG: smd:Smed_0789 nitrate reductase; SMART: Molybdopterin oxidoreductase, Fe4S4 domain
YP_005712979.1	KEGG: smd:Smed_0790 NUDIX hydrolase; TIGRFAM: Nucleoside diphosphate pyrophosphatase; PFAM: NUDIX hydrolase domain
YP_005712980.1	PFAM: Lysylphosphatidylglycerol synthetase/UPF0104; KEGG: rhi:NGR_c09290 lysyl-tRNA synthetase 2
YP_005712981.1	PFAM: Bacterial virulence; KEGG: rhi:NGR_c09300 putative acid tolerance protein
YP_005712982.1	TIGRFAM: Phosphoribosylglycinamide formyltransferase; KEGG: smd:Smed_0791 phosphoribosylglycinamide formyltransferase; PFAM: Formyl transferase, N-terminal
YP_005712983.1	TIGRFAM: Phosphoribosylformylglycinamidine cyclo-ligase; KEGG: rhi:NGR_c09330 phosphoribosylaminoimidazole synthetase; PFAM: AIR synthase-related protein, C-terminal; AIR synthase-related protein
YP_005712984.1	PFAM: Uncharacterised protein family UPF0118; KEGG: smd:Smed_0793 hypothetical protein
YP_005712985.1	KEGG: smd:Smed_0794 hypothetical protein
YP_005712986.1	PFAM: Polyphosphate kinase; TIGRFAM: Polyphosphate kinase; HAMAP: Polyphosphate kinase; KEGG: smd:Smed_0795 polyphosphate kinase
YP_005712987.1	KEGG: smd:Smed_0796 Ppx/GppA phosphatase; TIGRFAM: Exopolyphosphatase; PFAM: Ppx/GppA phosphatase
YP_005712988.1	KEGG: smd:Smed_0797 putative signal peptide protein
YP_005712989.1	PFAM: Adenylyl cyclase class-3/4/guanylyl cyclase; KEGG: smd:Smed_0798 putative adenylate/guanylate cyclase; SMART: Adenylyl cyclase class-3/4/guanylyl cyclase
YP_005712990.1	SMART: 3'-5' exonuclease; TIGRFAM: Ribonuclease D; KEGG: smd:Smed_0799 ribonuclease D; PFAM: 3'-5' exonuclease; Helicase/RNase D C-terminal, HRDC domain
YP_005712991.1	PFAM: Multicopper oxidase, type 3; Multicopper oxidase, type 2; Multicopper oxidase, type 1; KEGG: smd:Smed_0800 multicopper oxidase type 3
YP_005712992.1	PFAM: Major facilitator superfamily MFS-1; KEGG: smd:Smed_0801 major facilitator transporter
YP_005712994.1	TIGRFAM: Aspartyl-tRNA synthetase, class IIb, bacterial/mitochondrial type; KEGG: smd:Smed_0802 aspartyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class II (D/K/N); Nucleic acid binding, OB-fold, tRNA/helicase-type; GAD domain
YP_005712995.1	KEGG: bbt:BBta_6071 putative rhodanese-related sulfurtransferase; PFAM: Rhodanese-like; SMART: Rhodanese-like
YP_005712996.1	TIGRFAM: Chaperonin Cpn60; HAMAP: Chaperonin Cpn60; KEGG: smd:Smed_0804 chaperonin GroEL; PFAM: Chaperonin Cpn60/TCP-1
YP_005712997.1	KEGG: smd:Smed_0805 hypothetical protein
YP_005712998.1	KEGG: smd:Smed_0806 hypothetical protein
YP_005712999.1	SMART: DNA topoisomerase, type IIA, subunit A/C-terminal; TIGRFAM: DNA topoisomerase IV, subunit A, Gram-negative; KEGG: smd:Smed_0807 DNA topoisomerase IV subunit A; PFAM: DNA topoisomerase, type IIA, subunit A/C-terminal; DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel
YP_005713000.1	SMART: HTH transcriptional regulator, ArsR; KEGG: smd:Smed_0808 regulatory protein ArsR
YP_005713001.1	KEGG: smd:Smed_0809 hypothetical protein
YP_005713002.1	HAMAP: Arginine-tRNA-protein transferase, predicted, prokaryotic; KEGG: smd:Smed_0810 arginyl-tRNA-protein transferase; PFAM: Arginine-tRNA-protein transferase, C-terminal; Arginine-tRNA-protein transferase, N-terminal
YP_005713003.1	PFAM: RDD; KEGG: smd:Smed_0811 RDD domain-containing protein
YP_005713004.1	KEGG: smd:Smed_0812 delta-aminolevulinic acid dehydratase; PFAM: Tetrapyrrole biosynthesis, porphobilinogen synthase
YP_005713005.1	KEGG: smd:Smed_0813 hypothetical protein
YP_005713006.1	SMART: HTH transcriptional regulator, MarR; KEGG: smd:Smed_0814 MarR family transcriptional regulator
YP_005713007.1	PFAM: YkuD domain; Peptidoglycan binding-like; KEGG: smd:Smed_0815 peptidoglycan binding domain-containing protein
YP_005713008.1	KEGG: rhi:NGR_c09570 serine hydroxymethyltransferase; PFAM: Serine hydroxymethyltransferase
YP_005713009.1	TIGRFAM: Ribonucleotide reductase regulator NrdR-like; HAMAP: Ribonucleotide reductase regulator NrdR-like; KEGG: smd:Smed_0817 transcriptional regulator NrdR; PFAM: ATP-cone
YP_005713010.1	TIGRFAM: Riboflavin biosynthesis protein RibD; KEGG: smd:Smed_0818 riboflavin biosynthesis protein RibD; PFAM: CMP/dCMP deaminase, zinc-binding; Bacterial bifunctional deaminase-reductase, C-terminal
YP_005713011.1	TIGRFAM: Lumazine-binding protein; KEGG: smd:Smed_0819 riboflavin synthase subunit alpha; PFAM: Lumazine-binding protein
YP_005713012.1	KEGG: rhi:NGR_c09610 hypothetical protein
YP_005713013.1	PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: smd:Smed_0820 GCN5-related N-acetyltransferase
YP_005713014.1	PFAM: Cupin 2, conserved barrel; KEGG: rhi:NGR_c09630 hypothetical protein
YP_005713015.1	PFAM: 6,7-dimethyl-8-ribityllumazine synthase; TIGRFAM: 6,7-dimethyl-8-ribityllumazine synthase; HAMAP: 6,7-dimethyl-8-ribityllumazine synthase; KEGG: smd:Smed_0821 6,7-dimethyl-8-ribityllumazine synthase
YP_005713016.1	TIGRFAM: NusB antitermination factor; HAMAP: NusB antitermination factor; KEGG: smd:Smed_0822 transcription antitermination protein NusB; PFAM: NusB/RsmB/TIM44
YP_005713017.1	PFAM: Major facilitator superfamily MFS-1; KEGG: smd:Smed_0823 major facilitator transporter
YP_005713018.1	PFAM: Pyrophosphate-energised proton pump; TIGRFAM: Pyrophosphate-energised proton pump; HAMAP: Pyrophosphate-energised proton pump; KEGG: smd:Smed_0824 membrane-bound proton-translocating pyrophosphatase
YP_005713019.1	PFAM: Lipoprotein SmpA/OmlA; KEGG: smd:Smed_0825 SmpA/OmlA domain-containing protein
YP_005713020.1	PFAM: Ubiquinol-cytochrome c chaperone/UPF0174; KEGG: smd:Smed_0826 ubiquinol-cytochrome c chaperone
YP_005713021.1	PFAM: Protein of unknown function DUF177; KEGG: smd:Smed_0827 hypothetical protein
YP_005713022.1	TIGRFAM: Phospholipid biosynthesis protein, PlsX-like; HAMAP: Phospholipid biosynthesis protein, PlsX-like; KEGG: smd:Smed_0828 putative glycerol-3-phosphate acyltransferase PlsX; PFAM: Fatty acid synthesis PlsX protein
YP_005713023.1	PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; TIGRFAM: Beta-ketoacyl-acyl carrier protein synthase III (FabH); HAMAP: Beta-ketoacyl-acyl carrier protein synthase III (FabH); KEGG: smd:Smed_0829 3-oxoacyl-(acyl carrier protein) synthase III
YP_005713024.1	SMART: Histone-like bacterial DNA-binding protein; TIGRFAM: Integration host factor, alpha subunit; KEGG: smd:Smed_0830 integration host factor subunit alpha; HAMAP: Integration host factor, alpha subunit; PFAM: Histone-like bacterial DNA-binding protein
YP_005713025.1	KEGG: smd:Smed_0831 MerR family transcriptional regulator; PFAM: HTH transcriptional regulator, MerR; SMART: HTH transcriptional regulator, MerR
YP_005713026.1	KEGG: smd:Smed_0832 hypothetical protein
YP_005713027.1	KEGG: smd:Smed_4828 hypothetical protein
YP_005713028.1	KEGG: smd:Smed_1377 putative signal peptide protein
YP_005713030.1	PFAM: Glycosyl transferase, group 1; KEGG: ara:Arad_1791 glycosyltransferase protein
YP_005713031.1	KEGG: smd:Smed_0850 hypothetical protein
YP_005713032.1	TIGRFAM: Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; Undecaprenyl-phosphate glucose phosphotransferase, WcaJ; KEGG: smd:Smed_0851 undecaprenyl-phosphate galactose phosphotransferase; PFAM: Bacterial sugar transferase
YP_005713033.1	PFAM: Glycosyl transferase, group 1; KEGG: smd:Smed_0852 glycosyl transferase group 1
YP_005713034.1	PFAM: Polysaccharide export protein; Soluble ligand binding domain; KEGG: smd:Smed_0853 polysaccharide export protein
YP_005713035.1	PFAM: Lipopolysaccharide biosynthesis; Cobyrinic acid a,c-diamide synthase; KEGG: smd:Smed_0854 exopolysaccharide transport protein family
YP_005713036.1	KEGG: smd:Smed_0855 hypothetical protein
YP_005713037.1	KEGG: rhi:NGR_c10150 streptogramin A acetyl transferase; PFAM: Bacterial transferase hexapeptide repeat
YP_005713038.1	PFAM: Metallo-dependent phosphatase; KEGG: smd:Smed_0856 metallophosphoesterase
YP_005713039.1	KEGG: smd:Smed_0857 putative signal peptide protein
YP_005713040.1	KEGG: smd:Smed_0858 cytochrome oxidase assembly; HAMAP: Heme A synthase/Protoheme IX farnesyltransferase; PFAM: Heme A synthase/Protoheme IX farnesyltransferase
YP_005713041.1	KEGG: smd:Smed_0859 N-acetyl-gamma-glutamyl-phosphate reductase; PFAM: Semialdehyde dehydrogenase, NAD-binding; TIGRFAM: N-acetyl-gamma-glutamyl-phosphate reductase, type 2; HAMAP: N-acetyl-gamma-glutamyl-phosphate reductase, type 2; SMART: Semialdehyde dehydrogenase, NAD-binding
YP_005713042.1	TIGRFAM: Putative agmatinase; KEGG: rhi:NGR_c10200 agmatinase; PFAM: Ureohydrolase
YP_005713043.1	PFAM: Ribosomal protein S9; KEGG: smd:Smed_0861 30S ribosomal protein S9
YP_005713044.1	KEGG: smd:Smed_0862 50S ribosomal protein L13; TIGRFAM: Ribosomal protein L13, bacterial-type; PFAM: Ribosomal protein L13
YP_005713045.1	KEGG: smd:Smed_0863 thioesterase superfamily protein; TIGRFAM: Phenylacetic acid degradation-related protein; PFAM: Thioesterase superfamily
YP_005713046.1	PFAM: Crotonase, core; KEGG: smd:Smed_0864 enoyl-CoA hydratase
YP_005713048.1	PFAM: Drug/metabolite transporter; KEGG: smd:Smed_0865 hypothetical protein
YP_005713049.1	KEGG: smd:Smed_0866 CoA-binding domain-containing protein; PFAM: CoA-binding; SMART: CoA-binding
YP_005713050.1	TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; KEGG: smd:Smed_0867 O-acetylhomoserine aminocarboxypropyltransferase; PFAM: Cys/Met metabolism, pyridoxal phosphate-dependent enzyme
YP_005713051.1	PFAM: Domain of unknown function DUF861, cupin-3; KEGG: smd:Smed_0868 protein of unknown function DUF861 cupin_3
YP_005713052.1	PFAM: Cytochrome P450; KEGG: smd:Smed_0869 cytochrome P450
YP_005713053.1	PFAM: Endonuclease/exonuclease/phosphatase; KEGG: smd:Smed_0870 endonuclease/exonuclease/phosphatase
YP_005713054.1	KEGG: smd:Smed_0871 phospholipase D/transphosphatidylase; PFAM: Phospholipase D/Transphosphatidylase; SMART: Phospholipase D/Transphosphatidylase
YP_005713055.1	PFAM: Peptidase S14, ClpP; TIGRFAM: Peptidase S14, ClpP; HAMAP: Peptidase S14, ClpP; KEGG: smd:Smed_0872 ATP-dependent Clp protease proteolytic subunit
YP_005713056.1	SMART: ATPase, AAA+ type, core; TIGRFAM: Clp protease, ATP-binding subunit ClpX; KEGG: smd:Smed_0873 ATP-dependent protease ATP-binding subunit ClpX; HAMAP: Clp protease, ATP-binding subunit ClpX; PFAM: ATPase, AAA-2; Zinc finger, C4-type; Clp ATPase, C-terminal
YP_005713057.1	SMART: Peptidase S16, lon N-terminal; ATPase, AAA+ type, core; TIGRFAM: Peptidase S16, ATP-dependent protease La; KEGG: smd:Smed_0874 ATP-dependent protease La; PFAM: Peptidase S16, Lon C-terminal; Peptidase S16, lon N-terminal; ATPase, AAA-type, core
YP_005713058.1	KEGG: smd:Smed_0875 histone family protein DNA-binding protein; PFAM: Histone-like bacterial DNA-binding protein; SMART: Histone-like bacterial DNA-binding protein
YP_005713059.1	KEGG: smd:Smed_0876 hypothetical protein
YP_005713060.1	KEGG: smd:Smed_0877 MarR family transcriptional regulator; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR
YP_005713061.1	PFAM: Metallo-dependent phosphatase; KEGG: smd:Smed_0878 metallophosphoesterase
YP_005713062.1	KEGG: smd:Smed_0879 hypothetical protein
YP_005713063.1	PFAM: Cupin 2, conserved barrel; KEGG: smd:Smed_0880 cupin 2 domain-containing protein
YP_005713064.1	KEGG: smd:Smed_0888 NADH dehydrogenase subunit A; HAMAP: NAD(P)H-quinone oxidoreductase subunit 3, bacterial/plastid; PFAM: NADH:ubiquinone/plastoquinone oxidoreductase, chain 3
YP_005713065.1	PFAM: NADH:ubiquinone oxidoreductase-like, 20kDa subunit; TIGRFAM: NADH-ubiquinone oxidoreductase, 20 Kd subunit; HAMAP: NADH-ubiquinone oxidoreductase, 20 Kd subunit; KEGG: rhi:NGR_c10490 NADH dehydrogenase subunit B
YP_005713066.1	PFAM: NADH:ubiquinone oxidoreductase, 30kDa subunit; TIGRFAM: NADH dehydrogenase, subunit C; HAMAP: NADH dehydrogenase, subunit C; KEGG: smd:Smed_0890 NADH dehydrogenase subunit C
YP_005713067.1	PFAM: NADH-quinone oxidoreductase, subunit D; TIGRFAM: NADH dehydrogenase I, subunit D; HAMAP: NAD(P)H-quinone oxidoreductase subunit D/H; KEGG: smd:Smed_0891 NADH dehydrogenase subunit D
YP_005713068.1	KEGG: smd:Smed_0892 putative signal peptide protein
YP_005713069.1	TIGRFAM: NADH:ubiquinone oxidoreductase, 24kDa subunit; KEGG: smd:Smed_0893 NADH dehydrogenase subunit E; PFAM: NADH:ubiquinone oxidoreductase, 24kDa subunit
YP_005713070.1	SMART: NADH ubiquinone oxidoreductase, F subunit, iron sulphur binding; TIGRFAM: NADH ubiquinone oxidoreductase, F subunit; KEGG: smd:Smed_0894 NADH dehydrogenase I subunit F; PFAM: NADH:ubiquinone oxidoreductase, 51kDa subunit; Soluble ligand binding domain; NADH ubiquinone oxidoreductase, F subunit, iron sulphur binding
YP_005713071.1	KEGG: smd:Smed_0895 putative NADH dehydrogenase I chain E
YP_005713072.1	SMART: NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding; TIGRFAM: NADH:ubiquinone oxidoreductase, subunit G; KEGG: smd:Smed_0896 NADH dehydrogenase subunit G; PFAM: Molybdopterin oxidoreductase; NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding; Ferredoxin; NADH-quinone oxidoreductase, chain G, C-terminal
YP_005713073.1	KEGG: smd:Smed_0897 NADH dehydrogenase subunit H; PFAM: NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H
YP_005713074.1	PFAM: 4Fe-4S binding domain; TIGRFAM: NADH-quinone oxidoreductase, chain I; HAMAP: NADH-quinone oxidoreductase, chain I; KEGG: smd:Smed_0898 NADH dehydrogenase subunit I
YP_005713075.1	PFAM: NADH:ubiquinone/plastoquinone oxidoreductase, chain 6; KEGG: smd:Smed_0899 NADH dehydrogenase subunit J
YP_005713076.1	KEGG: rhi:NGR_c10600 NADH dehydrogenase subunit K; HAMAP: NADH-ubiquinone oxidoreductase chain 4L/K; PFAM: NADH-ubiquinone oxidoreductase chain 4L/K
YP_005713077.1	TIGRFAM: NADH-plastoquinone oxidoreductase, chain 5; KEGG: smd:Smed_0901 NADH dehydrogenase subunit L; PFAM: NADH:ubiquinone/plastoquinone oxidoreductase; NADH:ubiquinone oxidoreductase, chain 5/L, N-terminal; NADH dehydrogenase subunit 5, C-terminal
YP_005713078.1	TIGRFAM: NADH-quinone oxidoreductase, chain M/4; KEGG: smd:Smed_0902 NADH dehydrogenase subunit M; PFAM: NADH:ubiquinone/plastoquinone oxidoreductase
YP_005713079.1	TIGRFAM: NAD(P)H-quinone oxidoreductase, subunit N/subunit 2; KEGG: smd:Smed_0903 NADH dehydrogenase subunit N; PFAM: NADH:ubiquinone/plastoquinone oxidoreductase
YP_005713080.1	KEGG: smd:Smed_0904 biotin--acetyl-CoA-carboxylase ligase; TIGRFAM: Biotin--acetyl-CoA-carboxylase ligase; PFAM: Biotin/lipoate A/B protein ligase; Biotin protein ligase, C-terminal
YP_005713081.1	KEGG: smd:Smed_0905 beta-lactamase domain-containing protein; PFAM: Beta-lactamase-like; RNA-metabolising metallo-beta-lactamase; SMART: Beta-lactamase-like
YP_005713082.1	TIGRFAM: Methylmalonyl-CoA epimerase; KEGG: smd:Smed_0906 methylmalonyl-CoA epimerase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase
YP_005713083.1	PFAM: Protein of unknown function DUF1467; KEGG: smd:Smed_0907 hypothetical protein
YP_005713084.1	PFAM: PilT protein, N-terminal; KEGG: rru:Rru_A1062 PilT protein-like
YP_005713085.1	KEGG: rru:Rru_A1061 helix-turn-helix protein, CopG
YP_005713086.1	TIGRFAM: Prolyl-tRNA synthetase, class IIa, bacterial; HAMAP: Prolyl-tRNA synthetase; KEGG: smd:Smed_0918 prolyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain; Anticodon-binding
YP_005713087.1	KEGG: smd:Smed_0919 LolC/E family lipoprotein releasing system, transmembrane protein; TIGRFAM: Lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: Domain of unknown function DUF214, ABC transporter permease
YP_005713088.1	PFAM: ABC transporter-like; KEGG: smd:Smed_0920 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_005713089.1	SMART: Polymerase/histidinol phosphatase, N-terminal; TIGRFAM: DNA polymerase III, alpha subunit; KEGG: smd:Smed_0921 DNA polymerase III subunit alpha; PFAM: Bacterial DNA polymerase III, alpha subunit; PHP, C-terminal; Nucleic acid binding, OB-fold, tRNA/helicase-type
YP_005713090.1	PFAM: YkuD domain; Peptidoglycan binding-like; KEGG: smd:Smed_0922 hypothetical protein
YP_005713091.1	HAMAP: DNA polymerase IV; KEGG: smd:Smed_0923 DNA polymerase IV; PFAM: DNA-repair protein, UmuC-like
YP_005713092.1	KEGG: smd:Smed_0924 hypothetical protein
YP_005713093.1	KEGG: rhi:NGR_c10790 putative response regulator in two-component regulatory system; PFAM: Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain
YP_005713094.1	TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate cyclase, predicted; Signal transduction response regulator, receiver domain; KEGG: smd:Smed_0926 response regulator PleD; SMART: Diguanylate cyclase, predicted; Signal transduction response regulator, receiver domain
YP_005713095.1	TIGRFAM: Ribosomal protein L33; HAMAP: Ribosomal protein L33; KEGG: smd:Smed_0927 50S ribosomal protein L33; PFAM: Ribosomal protein L33
YP_005713096.1	PFAM: Major facilitator superfamily MFS-1; KEGG: smd:Smed_0928 major facilitator transporter
YP_005713097.1	PFAM: NUDIX hydrolase domain; KEGG: smd:Smed_0929 NUDIX hydrolase
YP_005713098.1	PFAM: Protein of unknown function DUF983; KEGG: smd:Smed_0930 hypothetical protein
YP_005713099.1	SMART: Ribonuclease II/R; RNA-binding domain, S1; TIGRFAM: Ribonuclease R, bacterial; Ribonuclease II/ribonuclease R, bacteria; KEGG: smd:Smed_0931 ribonuclease R; PFAM: Ribonuclease II/R; Ribosomal protein S1, RNA-binding domain
YP_005713100.1	SMART: DNA topoisomerase, type IA, DNA-binding; DNA topoisomerase, type IA, domain 2; Toprim domain; TIGRFAM: DNA topoisomerase I, bacterial-type; KEGG: smd:Smed_0932 DNA topoisomerase I; PFAM: DNA topoisomerase, type IA, central; Toprim domain; DNA topoisomerase, type IA, zn finger
YP_005713101.1	KEGG: smd:Smed_0933 DNA protecting protein DprA; TIGRFAM: DNA recombination-mediator protein A; PFAM: DNA recombination-mediator protein A
YP_005713102.1	KEGG: smd:Smed_0934 putative glycerol-3-phosphate acyltransferase PlsY; TIGRFAM: Glycerol-3-phosphate acyltransferase, bacteria; PFAM: Glycerol-3-phosphate acyltransferase, bacteria
YP_005713103.1	KEGG: smd:Smed_0935 dihydroorotase; TIGRFAM: Dihydroorotase; PFAM: Amidohydrolase 1
YP_005713104.1	PFAM: Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding; Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain; TIGRFAM: Aspartate carbamoyltransferase, eukaryotic; HAMAP: Aspartate carbamoyltransferase, eukaryotic; KEGG: smd:Smed_0936 aspartate carbamoyltransferase catalytic subunit
YP_005713105.1	PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central domain; KEGG: smd:Smed_0937 acyl-CoA dehydrogenase domain-containing protein
YP_005713106.1	PFAM: Auxin efflux carrier; KEGG: smd:Smed_0938 auxin efflux carrier
YP_005713107.1	KEGG: smd:Smed_0940 hypothetical protein
YP_005713108.1	SMART: Resolvase, RNase H-like fold; TIGRFAM: Resolvase, holliday junction-type, YqgF-like; KEGG: smd:Smed_0941 Holliday junction resolvase-like protein; HAMAP: Resolvase, holliday junction-type, YqgF-like; PFAM: Resolvase, holliday junction-type, YqgF-like
YP_005713109.1	HAMAP: Uncharacterised protein family UPF0173, metal-dependent hydrolase; PFAM: Beta-lactamase-like; KEGG: smd:Smed_0942 metal-dependent hydrolase; SMART: Beta-lactamase-like
YP_005713110.1	TIGRFAM: Glu-tRNAGln amidotransferase, C subunit; HAMAP: Glu-tRNAGln amidotransferase, C subunit; KEGG: rhi:NGR_c10950 aspartyl/glutamyl-tRNA amidotransferase subunit C; PFAM: Glu-tRNAGln amidotransferase, C subunit
YP_005713111.1	KEGG: smd:Smed_0944 aspartyl/glutamyl-tRNA amidotransferase subunit A; TIGRFAM: Glutamyl-tRNA(Gln) amidotransferase A subunit; PFAM: Amidase
YP_005713112.1	KEGG: rhi:NGR_c10980 hypothetical protein; HAMAP: Protein of unknown function DUF2084; PFAM: Protein of unknown function DUF2084
YP_005713113.1	SMART: Asn/Gln amidotransferase; TIGRFAM: Glutamyl-tRNA(Gln) amidotransferase, B subunit; KEGG: smd:Smed_0946 aspartyl/glutamyl-tRNA amidotransferase subunit B; HAMAP: Glutamyl-tRNA(Gln) amidotransferase, B subunit; PFAM: Glutamyl-tRNA(Gln) amidotransferase, subunit B/E, N-terminal; Asn/Gln amidotransferase
YP_005713114.1	PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: smd:Smed_0947 GCN5-related N-acetyltransferase
YP_005713115.1	PFAM: NADH:ubiquinone oxidoreductase, 17.2kDa subunit; KEGG: smd:Smed_0948 NADH dehydrogenase
YP_005713116.1	PFAM: Protein of unknown function DUF2155; KEGG: smd:Smed_0949 hypothetical protein
YP_005713117.1	PFAM: Leucyl/phenylalanyl-tRNA-protein transferase; TIGRFAM: Leucyl/phenylalanyl-tRNA-protein transferase; HAMAP: Leucyl/phenylalanyl-tRNA-protein transferase; KEGG: smd:Smed_0951 leucyl/phenylalanyl-tRNA--protein transferase
YP_005713118.1	SMART: Biotin carboxylase, C-terminal; TIGRFAM: Acetyl-CoA carboxylase, biotin carboxylase; KEGG: smd:Smed_0952 acetyl-CoA carboxylase biotin carboxylase subunit; PFAM: Carbamoyl-phosphate synthetase, large subunit, ATP-binding; Carbamoyl-phosphate synthase, large subunit, N-terminal; Biotin carboxylase, C-terminal
YP_005713119.1	KEGG: smd:Smed_0953 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; TIGRFAM: Acetyl-CoA biotin carboxyl carrier; PFAM: Biotin/lipoyl attachment
YP_005713120.1	PFAM: Dehydroquinase, class II; TIGRFAM: Dehydroquinase, class II; HAMAP: Dehydroquinase, class II; KEGG: smd:Smed_0954 3-dehydroquinate dehydratase
YP_005713121.1	PFAM: DSBA-like thioredoxin domain; KEGG: smd:Smed_0955 DsbA oxidoreductase
YP_005713122.1	KEGG: rhi:NGR_c11110 aspartate transaminase protein; PFAM: Aminotransferase, class I/classII
YP_005713123.1	PFAM: Reverse transcriptase; Group II intron, maturase-specific; KEGG: rhi:NGR_b07990 putative reverse transcriptase/maturase
YP_005713124.1	KEGG: smd:Smed_6023 transposase
YP_005713125.1	KEGG: rhi:NGR_b15470 hypothetical protein
YP_005713126.1	KEGG: smd:Smed_0957 ribonuclease; TIGRFAM: Ribonuclease E/G; PFAM: RNA-binding protein AU-1/Ribonuclease E/G; Ribosomal protein S1, RNA-binding domain
YP_005713127.1	PFAM: Cell wall hydrolase/autolysin, catalytic; Localisation of periplasmic protein complexes; KEGG: smd:Smed_0959 N-acetylmuramoyl-L-alanine amidase; SMART: Cell wall hydrolase/autolysin, catalytic
YP_005713128.1	TIGRFAM: Penicillin-binding protein 1A; KEGG: smd:Smed_0960 1A family penicillin-binding protein; PFAM: Glycosyl transferase, family 51; Penicillin-binding protein, transpeptidase
YP_005713129.1	manually curated; KEGG: bpm:BURPS1710b_3602 hypothetical protein
YP_005713130.1	KEGG: smd:Smed_0962 hypothetical protein
YP_005713131.1	HAMAP: Inorganic polyphosphate/ATP-NAD kinase, predicted; KEGG: smd:Smed_0963 inorganic polyphosphate/ATP-NAD kinase; PFAM: Inorganic polyphosphate/ATP-NAD kinase, predicted
YP_005713132.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: avi:Avi_1035 hypothetical protein
YP_005713133.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: smd:Smed_0965 LysR family transcriptional regulator
YP_005713134.1	KEGG: smd:Smed_0966 NAD(P)H dehydrogenase (quinone); HAMAP: NADH-azoreductase, FMN-dependent; PFAM: Flavodoxin-like fold
YP_005713135.1	KEGG: smd:Smed_0967 hypothetical protein
YP_005713136.1	TIGRFAM: RNA methyltransferase TrmH, group 3; PFAM: tRNA/rRNA methyltransferase, SpoU; RNA 2-O ribose methyltransferase, substrate binding; KEGG: smd:Smed_0968 RNA methyltransferase; SMART: RNA 2-O ribose methyltransferase, substrate binding
YP_005713137.1	KEGG: smd:Smed_0984 elongation factor Tu; TIGRFAM: Translation elongation factor EFTu/EF1A, bacterial/organelle; Small GTP-binding protein; PFAM: Protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, domain 2; Translation elongation factor EFTu/EF1A, C-terminal
YP_005713138.1	KEGG: smd:Smed_0970 hypothetical protein
YP_005713139.1	PFAM: NAD-dependent epimerase/dehydratase; KEGG: smd:Smed_0971 NAD-dependent epimerase/dehydratase
YP_005713140.1	KEGG: smd:Smed_0972 preprotein translocase subunit SecE; TIGRFAM: SecE subunit of protein translocation complex; PFAM: Protein SecE/Sec61-gamma protein
YP_005713141.1	TIGRFAM: Transcription antitermination protein, NusG; PFAM: Transcription antitermination protein, NusG, N-terminal; KOW; KEGG: smd:Smed_0973 transcription antitermination protein NusG; SMART: Transcription antitermination protein, NusG, N-terminal; KOW
YP_005713142.1	TIGRFAM: Ribosomal protein L11, bacterial-type; PFAM: Ribosomal protein L11, N-terminal domain; Ribosomal protein L11, C-terminal domain; KEGG: rhi:NGR_c11780 50S ribosomal protein L11; SMART: Ribosomal protein L11
YP_005713143.1	KEGG: smd:Smed_0975 50S ribosomal protein L1; TIGRFAM: Ribosomal protein L1, bacterial-type; PFAM: Ribosomal protein L1
YP_005713144.1	KEGG: smd:Smed_0976 50S ribosomal protein L10; HAMAP: Ribosomal protein L10; PFAM: Ribosomal protein L10/acidic P0
YP_005713145.1	TIGRFAM: Ribosomal protein L7/L12; HAMAP: Ribosomal protein L7/L12; KEGG: smd:Smed_0977 50S ribosomal protein L7/L12; PFAM: Ribosomal protein L7/L12, C-terminal
YP_005713146.1	TIGRFAM: DNA-directed RNA polymerase, beta subunit, bacterial-type; HAMAP: DNA-directed RNA polymerase, beta subunit, bacterial-type; KEGG: smd:Smed_0978 DNA-directed RNA polymerase subunit beta; PFAM: DNA-directed RNA polymerase, subunit 2, domain 6; RNA polymerase Rpb2, domain 3; RNA polymerase, beta subunit, protrusion; RNA polymerase Rpb2, domain 2; DNA-directed RNA polymerase, beta subunit, external 1 domain; RNA polymerase Rpb2, domain 7
YP_005713147.1	SMART: RNA polymerase, N-terminal; TIGRFAM: DNA-directed RNA polymerase, subunit beta-prime; KEGG: smd:Smed_0979 DNA-directed RNA polymerase subunit beta'; HAMAP: DNA-directed RNA polymerase, subunit beta-prime; PFAM: RNA polymerase Rpb1, domain 1; RNA polymerase, alpha subunit; RNA polymerase Rpb1, domain 3; RNA polymerase Rpb1, domain 4; RNA polymerase Rpb1, domain 5
YP_005713148.1	KEGG: smd:Smed_0980 hypothetical protein
YP_005713150.1	KEGG: avi:Avi_1833 30S ribosomal protein S12; TIGRFAM: Ribosomal protein S12, bacteria; PFAM: Ribosomal protein S12/S23
YP_005713151.1	KEGG: smd:Smed_0982 30S ribosomal protein S7; TIGRFAM: Ribosomal protein S7, bacterial-type; PFAM: Ribosomal protein S7
YP_005713152.1	TIGRFAM: Translation elongation factor EFG/EF2; Small GTP-binding protein; PFAM: Protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, domain 2; Translation elongation factor EFG/EF2, domain IV; Translation elongation factor EFG/EF2, C-terminal; KEGG: rhi:NGR_c11880 elongation factor G; SMART: Translation elongation factor EFG/EF2, domain IV; Translation elongation factor EFG/EF2, C-terminal
YP_005713153.1	KEGG: smd:Smed_0984 elongation factor Tu; TIGRFAM: Translation elongation factor EFTu/EF1A, bacterial/organelle; Small GTP-binding protein; PFAM: Protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, domain 2; Translation elongation factor EFTu/EF1A, C-terminal
YP_005713154.1	TIGRFAM: Ribosomal protein S10 subgroup; HAMAP: Ribosomal protein S10 subgroup; KEGG: rhi:NGR_c11900 30S ribosomal protein S10; PFAM: Ribosomal protein S10
YP_005713155.1	KEGG: smd:Smed_0986 50S ribosomal protein L3; TIGRFAM: Ribosomal protein L3, bacterial/organelle-type; PFAM: Ribosomal protein L3
YP_005713156.1	PFAM: Ribosomal protein L4/L1e; KEGG: smd:Smed_0987 50S ribosomal protein L4
YP_005713157.1	PFAM: Ribosomal protein L25/L23; KEGG: smd:Smed_0988 50S ribosomal protein L23
YP_005713158.1	KEGG: smd:Smed_0989 50S ribosomal protein L2; TIGRFAM: Ribosomal protein L2, bacterial-type; PFAM: Ribosomal protein L2, C-terminal; Ribosomal Proteins L2, RNA binding domain
YP_005713159.1	KEGG: bmr:BMI_I1240 30S ribosomal protein S19; TIGRFAM: Ribosomal protein S19, bacterial-type; PFAM: Ribosomal protein S19/S15
YP_005713160.1	KEGG: smd:Smed_0991 50S ribosomal protein L22; TIGRFAM: Ribosomal protein L22, bacterial-type; PFAM: Ribosomal protein L22/L17
YP_005713161.1	TIGRFAM: Ribosomal protein S3, bacterial; PFAM: Ribosomal protein S3, C-terminal; Ribosomal protein S3, N-terminal; K Homology, type 2; KEGG: smd:Smed_0992 30S ribosomal protein S3; SMART: K Homology
YP_005713162.1	TIGRFAM: Ribosomal protein L16; HAMAP: Ribosomal protein L16; KEGG: rhi:NGR_c11980 50S ribosomal protein L16; PFAM: Ribosomal protein L10e/L16
YP_005713163.1	KEGG: ara:Arad_1982 50S ribosomal protein L29; TIGRFAM: Ribosomal protein L29; PFAM: Ribosomal protein L29
YP_005713164.1	KEGG: smd:Smed_0995 30S ribosomal protein S17; TIGRFAM: Ribosomal protein S17, bacterial-type; PFAM: Ribosomal protein S17
YP_005713165.1	KEGG: smd:Smed_0996 50S ribosomal protein L14; TIGRFAM: Ribosomal protein L14, bacterial-type; PFAM: Ribosomal protein L14b/L23e
YP_005713166.1	TIGRFAM: Ribosomal protein L24; PFAM: KOW; KEGG: smd:Smed_0997 50S ribosomal protein L24; SMART: KOW
YP_005713167.1	PFAM: Ribosomal protein L5; KEGG: smd:Smed_0998 50S ribosomal protein L5
YP_005713168.1	KEGG: smd:Smed_0999 30S ribosomal protein S14; HAMAP: Ribosomal protein S14, bacterial/plastid; PFAM: Ribosomal protein S14
YP_005713169.1	PFAM: Ribosomal protein S8; KEGG: rhi:NGR_c12050 30S ribosomal protein S8
YP_005713170.1	KEGG: smd:Smed_1001 50S ribosomal protein L6; TIGRFAM: Ribosomal protein L6, bacterial-type; PFAM: Ribosomal protein L6, alpha-beta domain
YP_005713171.1	KEGG: smd:Smed_1002 50S ribosomal protein L18; TIGRFAM: Ribosomal protein L18, bacterial; PFAM: Ribosomal protein L18/L5
YP_005713172.1	KEGG: smd:Smed_1003 30S ribosomal protein S5; TIGRFAM: Ribosomal protein S5, bacterial-type; PFAM: Ribosomal protein S5, C-terminal; Ribosomal protein S5, N-terminal
YP_005713173.1	KEGG: smd:Smed_1004 50S ribosomal protein L30; TIGRFAM: Ribosomal protein L30, bacterial-type; PFAM: Ribosomal protein L30, ferredoxin-like fold domain
YP_005713174.1	TIGRFAM: Ribosomal protein L15, bacterial-type; KEGG: smd:Smed_1005 50S ribosomal protein L15
YP_005713175.1	KEGG: smd:Smed_1006 preprotein translocase subunit SecY; TIGRFAM: SecY protein; PFAM: SecY protein
YP_005713176.1	TIGRFAM: Adenylate kinase, subfamily; HAMAP: Adenylate kinase; KEGG: smd:Smed_1007 adenylate kinase; PFAM: Adenylate kinase
YP_005713177.1	KEGG: smd:Smed_1008 30S ribosomal protein S13; TIGRFAM: Ribosomal protein S13, bacterial-type; PFAM: Ribosomal protein S13
YP_005713178.1	KEGG: rhi:NGR_c12130 30S ribosomal protein S11; TIGRFAM: Ribosomal protein S11, bacterial-type; PFAM: Ribosomal protein S11
YP_005713179.1	SMART: DNA-directed RNA polymerase, RpoA/D/Rpb3-type; TIGRFAM: DNA-directed RNA polymerase, alpha subunit; KEGG: smd:Smed_1010 DNA-directed RNA polymerase subunit alpha; HAMAP: DNA-directed RNA polymerase, alpha subunit; PFAM: DNA-directed RNA polymerase, insert domain; DNA-directed RNA polymerase, dimerisation; RNA polymerase, alpha subunit, C-terminal
YP_005713180.1	TIGRFAM: Ribosomal protein L17; HAMAP: Ribosomal protein L17; KEGG: rhi:NGR_c12150 50S ribosomal protein L17; PFAM: Ribosomal protein L17
YP_005713181.1	KEGG: smd:Smed_1012 putative sulfite oxidase subunit YedZ; HAMAP: Sulphoxide reductase heme-binding subunit YedZ; PFAM: Flavoprotein transmembrane component
YP_005713182.1	KEGG: smd:Smed_1013 putative sulfite oxidase subunit YedY; HAMAP: Sulphoxide reductase catalytic subunit YedY; PFAM: Oxidoreductase, molybdopterin-binding domain
YP_005713183.1	SMART: PDZ/DHR/GLGF; TIGRFAM: Peptidase S1C, Do; KEGG: smd:Smed_1014 protease Do; PFAM: Peptidase S1/S6, chymotrypsin/Hap; PDZ/DHR/GLGF
YP_005713184.1	KEGG: smd:Smed_1015 recombination factor protein RarA; PFAM: MgsA AAA+ ATPase C-terminal; ATPase, AAA-type, core; SMART: ATPase, AAA+ type, core
YP_005713185.1	PFAM: Small multidrug resistance protein; KEGG: smd:Smed_1016 small multidrug resistance protein
YP_005713186.1	PFAM: ATP12, ATPase F1F0-assembly protein; KEGG: smd:Smed_1017 ATP12 ATPase
YP_005713187.1	KEGG: smd:Smed_1018 HAD family hydrolase; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase-like hydrolase
YP_005713188.1	KEGG: smd:Smed_1019 RluA family pseudouridine synthase; TIGRFAM: Pseudouridine synthase, RluC/RluD; PFAM: Pseudouridine synthase, RsuA and RluB/C/D/E/F; Peptidoglycan-binding lysin domain
YP_005713189.1	TIGRFAM: Camphor resistance CrcB protein; HAMAP: Camphor resistance CrcB protein; KEGG: smd:Smed_1020 camphor resistance protein CrcB; PFAM: Camphor resistance CrcB protein
YP_005713190.1	TIGRFAM: S-formylglutathione hydrolase; KEGG: smd:Smed_1021 S-formylglutathione hydrolase; PFAM: Putative esterase
YP_005713191.1	PFAM: Protein of unknown function DUF1345; KEGG: smd:Smed_1022 hypothetical protein
YP_005713192.1	KEGG: smd:Smed_1023 hypothetical protein; HAMAP: Protein of unknown function DUF188; PFAM: Protein of unknown function DUF188
YP_005713193.1	KEGG: smd:Smed_1024 S-(hydroxymethyl)glutathione dehydrogenase; TIGRFAM: Alcohol dehydrogenase class III/S-(hydroxymethyl)glutathione dehydrogenase; PFAM: Alcohol dehydrogenase GroES-like; Alcohol dehydrogenase, C-terminal
YP_005713194.1	KEGG: smd:Smed_1025 helix-turn-helix domain-containing protein; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3
YP_005713195.1	PFAM: Biotin/lipoate A/B protein ligase; TIGRFAM: Octanoyltransferase; HAMAP: Octanoyltransferase; KEGG: smd:Smed_1026 lipoate-protein ligase B
YP_005713196.1	KEGG: smd:Smed_1027 putative serine protein kinase, PrkA; PFAM: PrkA AAA; PrkA serine kinase; SMART: PrkA AAA
YP_005713197.1	KEGG: smd:Smed_1028 hypothetical protein; HAMAP: Uncharacterised protein family UPF0229; PFAM: Uncharacterised protein family UPF0229
YP_005713198.1	PFAM: Sporulation stage V, protein R; KEGG: smd:Smed_1029 SpoVR family protein
YP_005713199.1	KEGG: smd:Smed_1030 hypothetical protein
YP_005713200.1	KEGG: smd:Smed_1031 hypothetical protein
YP_005713201.1	PFAM: Formylmethionine deformylase; TIGRFAM: Formylmethionine deformylase; HAMAP: Formylmethionine deformylase; KEGG: smd:Smed_1032 peptide deformylase
YP_005713202.1	TIGRFAM: Divalent cation transporter; PFAM: Magnesium transporter, MgtE intracellular domain; Cystathionine beta-synthase, core; MgtE magnesium transporter, integral membrane; KEGG: smd:Smed_1033 magnesium transporter; SMART: Magnesium transporter, MgtE intracellular domain; Cystathionine beta-synthase, core
YP_005713203.1	KEGG: smd:Smed_1034 MerR family transcriptional regulator; PFAM: Transcription regulator MerR, DNA binding; HTH transcriptional regulator, MerR; SMART: HTH transcriptional regulator, MerR
YP_005713204.1	PFAM: Isoprenylcysteine carboxyl methyltransferase; KEGG: rhi:NGR_c12410 hypothetical protein
YP_005713205.1	PFAM: Protein of unknown function DUF1624; KEGG: smd:Smed_1035 hypothetical protein
YP_005713206.1	PFAM: Protein of unknown function DUF599; KEGG: smd:Smed_1036 hypothetical protein
YP_005713208.1	TIGRFAM: Iron-sulphur-dependent L-serine dehydratase single chain form; KEGG: rhi:NGR_c12440 L-serine dehydratase; PFAM: Serine dehydratase-like, alpha subunit; Serine dehydratase beta chain
YP_005713209.1	PFAM: Uncharacterised conserved protein UCP032025; KEGG: rhi:NGR_c12450 hypothetical protein
YP_005713210.1	KEGG: smd:Smed_1039 hypothetical protein
YP_005713211.1	KEGG: smd:Smed_1040 serine-type D-Ala-D-Ala carboxypeptidase; PFAM: Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal; Sporulation-related domain
YP_005713212.1	KEGG: smd:Smed_1041 hypothetical protein
YP_005713213.1	PFAM: Transglutaminase-like cysteine peptidase, predicted; KEGG: smd:Smed_1042 transglutaminase family protein cysteine peptidase BTLCP
YP_005713215.1	PFAM: Type IV pilus assembly PilZ; KEGG: smd:Smed_1043 type IV pilus assembly PilZ
YP_005713216.1	PFAM: Protein of unknown function DUF1457; KEGG: smd:Smed_1044 hypothetical protein
YP_005713217.1	PFAM: Peptidase S54, rhomboid domain; KEGG: smd:Smed_1045 rhomboid family protein
YP_005713218.1	KEGG: smd:Smed_1046 signal-transduction protein; PFAM: Cystathionine beta-synthase, core; SMART: Cystathionine beta-synthase, core
YP_005713219.1	PFAM: Patatin/Phospholipase A2-related; KEGG: smd:Smed_1047 patatin
YP_005713220.1	HAMAP: Phosphoribosyl-AMP cyclohydrolase; KEGG: rhi:NGR_c12560 phosphoribosyl-AMP cyclohydrolase; PFAM: Phosphoribosyl-AMP cyclohydrolase
YP_005713221.1	PFAM: GTP cyclohydrolase I/Nitrile oxidoreductase; TIGRFAM: GTP cyclohydrolase I; HAMAP: GTP cyclohydrolase I; KEGG: smd:Smed_1049 GTP cyclohydrolase I
YP_005713222.1	PFAM: NIF system FeS cluster assembly, NifU, N-terminal; KEGG: rhi:NGR_c12580 possible nitrogen-fixing NifU-like protein
YP_005713223.1	PFAM: Protein of unknown function DUF37; manually curated; TIGRFAM: Protein of unknown function DUF37; KEGG: smd:Smed_1051 hypothetical protein; HAMAP: Protein of unknown function DUF37
YP_005713224.1	KEGG: rhi:NGR_c12590 hypothetical protein
YP_005713225.1	PFAM: Protein of unknown function DUF1697; KEGG: smd:Smed_1053 hypothetical protein
YP_005713226.1	TIGRFAM: Threonyl-tRNA synthetase, class IIa; PFAM: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain; Threonyl/alanyl tRNA synthetase, SAD; TGS; Anticodon-binding; KEGG: smd:Smed_1054 threonyl-tRNA synthetase; SMART: Threonyl/alanyl tRNA synthetase, SAD
YP_005713227.1	KEGG: smd:Smed_1055 hypothetical protein
YP_005713228.1	PFAM: Nitroreductase-like; KEGG: smd:Smed_1056 nitroreductase
YP_005713229.1	KEGG: smd:Smed_1057 hypothetical protein; PFAM: Flavin reductase-like, FMN-binding; SMART: Flavin reductase-like, FMN-binding
YP_005713230.1	PFAM: Aldehyde-lyase domain; KEGG: smd:Smed_1058 HpcH/HpaI aldolase
YP_005713231.1	KEGG: smd:Smed_1059 hypothetical protein; manually curated; PFAM: Protein of unknown function DUF2336
YP_005713232.1	KEGG: smd:Smed_1060 hypothetical protein
YP_005713233.1	PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: smd:Smed_1061 GCN5-related N-acetyltransferase
YP_005713234.1	SMART: DNA topoisomerase, type IIA, subunit B/N-terminal; ATPase-like, ATP-binding domain; TIGRFAM: DNA topoisomerase IV, subunit B, Gram-negative; KEGG: smd:Smed_1062 DNA topoisomerase IV subunit B; PFAM: DNA topoisomerase, type IIA, subunit B, domain 2; ATPase-like, ATP-binding domain; DNA topoisomerase, type IIA, subunit B, C-terminal
YP_005713235.1	KEGG: smd:Smed_1063 hypothetical protein; manually curated; PFAM: Phospholipase/carboxylesterase
YP_005713236.1	KEGG: smd:Smed_1064 FAD linked oxidase domain-containing protein; manually curated; PFAM: FAD linked oxidase, N-terminal
YP_005713237.1	KEGG: smd:Smed_1065 YceI family protein; PFAM: Lipid/polyisoprenoid-binding, YceI-like; SMART: Lipid/polyisoprenoid-binding, YceI-like
YP_005713238.1	KEGG: smd:Smed_1066 cytochrome b561
YP_005713239.1	TIGRFAM: Triosephosphate isomerase; KEGG: smd:Smed_1067 triosephosphate isomerase; PFAM: Triosephosphate isomerase
YP_005713240.1	KEGG: smd:Smed_1068 preprotein translocase subunit SecG; TIGRFAM: Preprotein translocase SecG subunit; PFAM: Preprotein translocase SecG subunit
YP_005713241.1	PFAM: CTP synthase, N-terminal; Glutamine amidotransferase class-I, C-terminal; TIGRFAM: CTP synthase; HAMAP: CTP synthase; KEGG: smd:Smed_1069 CTP synthetase
YP_005713242.1	KEGG: smd:Smed_1070 hypothetical protein
YP_005713243.1	PFAM: DAHP synthetase I/KDSA; TIGRFAM: 3-deoxy-8-phosphooctulonate synthase; HAMAP: 3-deoxy-8-phosphooctulonate synthase; KEGG: smd:Smed_1071 2-dehydro-3-deoxyphosphooctonate aldolase
YP_005713244.1	PFAM: Enolase, C-terminal; Enolase, N-terminal; TIGRFAM: Enolase; HAMAP: Enolase; KEGG: smd:Smed_1072 phosphopyruvate hydratase
YP_005713245.1	PFAM: Septum formation initiator; KEGG: smd:Smed_1075 septum formation initiator
YP_005713246.1	TIGRFAM: Pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit, subgroup y; KEGG: smd:Smed_1076 dehydrogenase E1 component; PFAM: Dehydrogenase, E1 component
YP_005713247.1	KEGG: smd:Smed_1077 pyruvate dehydrogenase subunit beta; PFAM: Transketolase-like, pyrimidine-binding domain; Biotin/lipoyl attachment; Transketolase, C-terminal; SMART: Transketolase-like, pyrimidine-binding domain
YP_005713248.1	TIGRFAM: Dihydrolipoamide acetyltransferase, long form; KEGG: smd:Smed_1078 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase; PFAM: 2-oxoacid dehydrogenase acyltransferase, catalytic domain; Biotin/lipoyl attachment; E3 binding
YP_005713249.1	PFAM: Lipase, GDSL; KEGG: smd:Smed_1079 GDSL family lipase
YP_005713250.1	PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: smd:Smed_1080 GCN5-related N-acetyltransferase
YP_005713251.1	TIGRFAM: Dihydrolipoamide dehydrogenase; KEGG: smd:Smed_1081 dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation
YP_005713252.1	PFAM: Transglycosylase-associated protein; KEGG: rhi:NGR_c12890 putative transmembrane protein
YP_005713253.1	KEGG: smd:Smed_1083 lipoyl synthase; PFAM: Radical SAM; TIGRFAM: Lipoate synthase; HAMAP: Lipoate synthase; SMART: Elongator protein 3/MiaB/NifB
YP_005713255.1	PFAM: Streptomyces cyclase/dehydrase; KEGG: smd:Smed_1085 cyclase/dehydrase
YP_005713256.1	KEGG: smd:Smed_1086 CinA domain-containing protein; TIGRFAM: CinA, C-terminal; PFAM: CinA, C-terminal
YP_005713257.1	KEGG: smd:Smed_1087 bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; TIGRFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, core; PFAM: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, core; 4-diphosphocytidyl-2C-methyl-D-erythritol synthase
YP_005713258.1	KEGG: smd:Smed_1088 nifR3 family TIM-barrel protein; TIGRFAM: tRNA-dihydrouridine synthase, TIM-barrel, NifR3; PFAM: tRNA-dihydrouridine synthase
YP_005713259.1	KEGG: smd:Smed_1089 signal transduction histidine kinase, nitrogen specific, NtrB; PFAM: ATPase-like, ATP-binding domain; PAS fold; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; PAS
YP_005713260.1	TIGRFAM: Signal transduction response regulator, nitrogen regulation NR(I); PFAM: RNA polymerase sigma factor 54, interaction; Signal transduction response regulator, receiver domain; Helix-turn-helix, Fis-type; KEGG: smd:Smed_1090 nitrogen metabolism transcriptional regulator, NtrC, fis family; SMART: Signal transduction response regulator, receiver domain; ATPase, AAA+ type, core
YP_005713261.1	TIGRFAM: PAS; PFAM: ATPase-like, ATP-binding domain; HAMP linker domain; PAS fold; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; KEGG: smd:Smed_1091 multi-sensor signal transduction histidine kinase; SMART: ATPase-like, ATP-binding domain; HAMP linker domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain
YP_005713262.1	KEGG: smd:Smed_1092 two component, sigma54 specific, fis family transcriptional regulator; PFAM: RNA polymerase sigma factor 54, interaction; Signal transduction response regulator, receiver domain; Helix-turn-helix, Fis-type; SMART: Signal transduction response regulator, receiver domain; ATPase, AAA+ type, core
YP_005713263.1	PFAM: Regulator of K+ conductance, N-terminal; Regulator of K+ conductance, C-terminal; KEGG: smd:Smed_1093 potassium transporter peripheral membrane component
YP_005713264.1	TIGRFAM: Host factor Hfq; HAMAP: Host factor Hfq; KEGG: rhi:NGR_c13010 RNA-binding protein Hfq; PFAM: Like-Sm ribonucleoprotein (LSM) domain
YP_005713265.1	KEGG: smd:Smed_1096 GTP-binding protein HSR1-related; TIGRFAM: GTP-binding protein, HflX; PFAM: GTP-binding protein, HSR1-related
YP_005713266.1	PFAM: Integrase, catalytic core; KEGG: rpt:Rpal_4342 integrase catalytic region
YP_005713267.1	KEGG: smd:Smed_1097 nucleoside triphosphate pyrophosphohydrolase; TIGRFAM: NTP pyrophosphohydrolase MazG, bacterial; PFAM: NTP pyrophosphohydrolase MazG, putative catalytic core
YP_005713268.1	PFAM: CMP/dCMP deaminase, zinc-binding; KEGG: smd:Smed_1098 CMP/dCMP deaminase zinc-binding
YP_005713269.1	KEGG: smd:Smed_1099 uroporphyrin-III C-methyltransferase; TIGRFAM: Uroporphyrin-III C-methyltransferase, C-terminal; Sirohaem synthase, N-terminal; PFAM: Tetrapyrrole methylase; Sirohaem synthase, dimerisation domain
YP_005713270.1	KEGG: smd:Smed_1100 hypothetical protein
YP_005713271.1	KEGG: smd:Smed_1101 nitrite/sulfite reductase hemoprotein beta subunit; PFAM: Nitrite/sulphite reductase 4Fe-4S domain; Nitrite/sulphite reductase, hemoprotein beta-component, ferrodoxin-like
YP_005713272.1	PFAM: Uncharacterised conserved protein UCP030820; KEGG: smd:Smed_1102 hypothetical protein
YP_005713273.1	KEGG: rhi:NGR_c13090 putative NADPH:ferredoxin reductase; PFAM: Oxidoreductase, FAD-binding domain; Oxidoreductase FAD/NAD(P)-binding
YP_005713275.1	manually curated; TIGRFAM: Addiction module toxin, RelE/StbE; KEGG: oan:Oant_4546 addiction module antitoxin; PFAM: Plasmid stabilisation system
YP_005713276.1	PFAM: ABC transporter-like; KEGG: rhi:NGR_c13140 putative ATP-binding component of a transport system; SMART: ATPase, AAA+ type, core
YP_005713277.1	KEGG: smd:Smed_1106 polar amino acid ABC transporter, inner membrane subunit; TIGRFAM: Amino acid ABC transporter, permease protein, 3-TM domain, His/Glu/Gln/Arg/opine family; PFAM: Binding-protein-dependent transport systems inner membrane component
YP_005713278.1	KEGG: smd:Smed_6438 polar amino acid ABC transporter, inner membrane subunit; TIGRFAM: Amino acid ABC transporter, permease protein, 3-TM domain, His/Glu/Gln/Arg/opine family; PFAM: Binding-protein-dependent transport systems inner membrane component
YP_005713279.1	TIGRFAM: Lysine-arginine-ornithine-binding periplasmic protein; PFAM: Extracellular solute-binding protein, family 3; KEGG: smd:Smed_1108 cationic amino acid ABC transporter, periplasmic binding protein; SMART: Extracellular solute-binding protein, family 3
YP_005713280.1	TIGRFAM: Cystathionine beta-lyase, bacterial; KEGG: smd:Smed_1109 cystathionine beta-lyase; PFAM: Cys/Met metabolism, pyridoxal phosphate-dependent enzyme
YP_005713281.1	PFAM: FAD dependent oxidoreductase; KEGG: smd:Smed_1110 monooxygenase FAD-binding
YP_005713282.1	KEGG: smd:Smed_1111 hypothetical protein
YP_005713283.1	PFAM: Alpha/beta hydrolase fold-1; KEGG: smd:Smed_1112 alpha/beta hydrolase fold
YP_005713284.1	SMART: Serine acetyltransferase, N-terminal; TIGRFAM: Serine O-acetyltransferase; KEGG: smd:Smed_1113 serine O-acetyltransferase; PFAM: Serine acetyltransferase, N-terminal; Bacterial transferase hexapeptide repeat
YP_005713285.1	KEGG: smd:Smed_1114 hypothetical protein
YP_005713286.1	KEGG: smd:Smed_1115 phasin family protein; TIGRFAM: Phasin, subfamily 1; PFAM: Phasin
YP_005713287.1	KEGG: rhi:NGR_c13250 ATP-dependent Clp protease adaptor protein ClpS; HAMAP: ATP-dependent Clp protease adaptor protein ClpS; PFAM: Adaptor protein ClpS, core
YP_005713288.1	TIGRFAM: ATP-dependent Clp protease ATP-binding subunit ClpA; PFAM: ATPase, AAA-2; Clp, N-terminal; ATPase, AAA-type, core; Clp ATPase, C-terminal; KEGG: smd:Smed_1117 ATP-dependent Clp protease, ATP-binding subunit ClpA; SMART: ATPase, AAA+ type, core
YP_005713289.1	PFAM: Branched-chain amino acid transport, permease; KEGG: smd:Smed_1118 AzlC family protein
YP_005713290.1	PFAM: Branched-chain amino acid transport, AzlD; KEGG: smd:Smed_1119 hypothetical protein
YP_005713291.1	PFAM: Histidine triad (HIT) protein; KEGG: rhi:NGR_c13290 HIT family protein
YP_005713292.1	PFAM: Protein of unknown function DUF482; KEGG: smd:Smed_1121 hypothetical protein
YP_005713293.1	PFAM: Glycerophosphoryl diester phosphodiesterase; KEGG: smd:Smed_1122 glycerophosphoryl diester phosphodiesterase
YP_005713294.1	PFAM: Endoribonuclease L-PSP; KEGG: smd:Smed_1123 endoribonuclease L-PSP
YP_005713295.1	PFAM: Protein of unknown function DUF1849; KEGG: smd:Smed_1124 hypothetical protein
YP_005713296.1	KEGG: smd:Smed_1131 30S ribosomal protein S2; TIGRFAM: Ribosomal protein S2, bacteria/mitochondria/plastid; PFAM: Ribosomal protein S2
YP_005713297.1	TIGRFAM: Translation elongation factor EFTs/EF1B; HAMAP: Translation elongation factor EFTs/EF1B; KEGG: smd:Smed_1132 elongation factor Ts; PFAM: Translation elongation factor EFTs/EF1B, dimerisation; Ubiquitin-associated/translation elongation factor EF1B, N-terminal
YP_005713298.1	TIGRFAM: Uridylate kinase, bacteria; KEGG: smd:Smed_1133 uridylate kinase; PFAM: Aspartate/glutamate/uridylate kinase
YP_005713299.1	TIGRFAM: Ribosome recycling factor; HAMAP: Ribosome recycling factor, bacterial-like; KEGG: smd:Smed_1134 ribosome recycling factor; PFAM: Ribosome recycling factor
YP_005713300.1	PFAM: Di-trans-poly-cis-decaprenylcistransferase-like; TIGRFAM: Di-trans-poly-cis-decaprenylcistransferase-like; HAMAP: Di-trans-poly-cis-decaprenylcistransferase-like; KEGG: smd:Smed_1135 undecaprenyl pyrophosphate synthase
YP_005713301.1	PFAM: Phosphatidate cytidylyltransferase; KEGG: smd:Smed_1136 phosphatidate cytidylyltransferase
YP_005713302.1	TIGRFAM: Peptidase M50, putative membrane-associated zinc metallopeptidase; PFAM: Peptidase M50; PDZ/DHR/GLGF; KEGG: smd:Smed_1137 putative membrane-associated zinc metalloprotease; SMART: PDZ/DHR/GLGF
YP_005713303.1	KEGG: smd:Smed_1138 surface antigen (D15); TIGRFAM: Outer membrane assembly protein, YaeT; PFAM: Bacterial surface antigen (D15); Surface antigen variable number
YP_005713304.1	TIGRFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; HAMAP: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; KEGG: smd:Smed_1139 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; PFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, non-repeat region; Bacterial transferase hexapeptide repeat
YP_005713305.1	TIGRFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ; HAMAP: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ; KEGG: rhi:NGR_c13430 (3R)-hydroxymyristoyl-ACP dehydratase; PFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ
YP_005713306.1	PFAM: Bacterial transferase hexapeptide repeat; TIGRFAM: Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase; HAMAP: Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase; KEGG: smd:Smed_1141 UDP-N-acetylglucosamine acyltransferase
YP_005713307.1	PFAM: Protein of unknown function DUF1009; KEGG: smd:Smed_1142 hypothetical protein
YP_005713308.1	TIGRFAM: Glycosyl transferase, family 19; KEGG: smd:Smed_1143 lipid-A-disaccharide synthase; PFAM: Glycosyl transferase, family 19
YP_005713309.1	KEGG: rhi:NGR_c36020 putative excinuclease ABC, C subunit; PFAM: Excinuclease ABC, C subunit, N-terminal; SMART: Excinuclease ABC, C subunit, N-terminal
YP_005713310.1	KEGG: smd:Smed_1144 type II citrate synthase; TIGRFAM: Citrate synthase, type II; PFAM: Citrate synthase-like
YP_005713311.1	KEGG: smd:Smed_1145 ComEC/Rec2-related protein; TIGRFAM: ComEC/Rec2-related protein; PFAM: ComEC/Rec2-related protein
YP_005713312.1	KEGG: smd:Smed_1146 TonB-system energizer ExbB type-1; TIGRFAM: TonB-system energizer ExbB type-1; PFAM: MotA/TolQ/ExbB proton channel
YP_005713313.1	KEGG: smd:Smed_1147 TonB system transport protein ExbD type-1; TIGRFAM: TonB system transport protein ExbD type-1; PFAM: Biopolymer transport protein ExbD/TolR
YP_005713314.1	KEGG: smd:Smed_1148 protein-L-isoaspartate(D-aspartate) O-methyltransferase; PFAM: Protein-L-isoaspartate(D-aspartate) O-methyltransferase
YP_005713315.1	KEGG: smd:Smed_1149 TolC family type I secretion outer membrane protein; TIGRFAM: Type I secretion outer membrane protein, TolC; PFAM: Outer membrane efflux protein
YP_005713316.1	PFAM: Protein of unknown function DUF2497; KEGG: smd:Smed_1150 hypothetical protein
YP_005713317.1	TIGRFAM: Valyl-tRNA synthetase; HAMAP: Valyl-tRNA synthetase; KEGG: smd:Smed_1151 valyl-tRNA synthetase
YP_005713318.1	PFAM: Membrane protein, aromatic hydrocarbon degradation; KEGG: smd:Smed_1152 aromatic hydrocarbon degradation membrane protein
YP_005713319.1	PFAM: Sel1-like; KEGG: smd:Smed_1153 Sel1 domain-containing protein
YP_005713320.1	TIGRFAM: Exodeoxyribonuclease III xth; AP endonuclease, family 1; KEGG: smd:Smed_1154 exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase
YP_005713321.1	PFAM: Phospholipase D/Transphosphatidylase; KEGG: smd:Smed_1155 phospholipase D/transphosphatidylase
YP_005713322.1	KEGG: smd:Smed_1156 iron-sulfur cluster assembly accessory protein; TIGRFAM: FeS cluster insertion; PFAM: FeS cluster biogenesis
YP_005713323.1	SMART: Metal-dependent phosphohydrolase, HD domain; TIGRFAM: Deoxyguanosinetriphosphate triphosphohydrolase; Uncharacterised protein family HDIG; KEGG: smd:Smed_1157 deoxyguanosinetriphosphate triphosphohydrolase-like protein; HAMAP: Deoxyguanosinetriphosphate triphosphohydrolase, type 2; PFAM: Metal-dependent phosphohydrolase, HD subdomain
YP_005713324.1	KEGG: smd:Smed_1158 arginyl-tRNA synthetase; TIGRFAM: Arginyl-tRNA synthetase, class Ic; HAMAP: Arginyl-tRNA synthetase, class Ic
YP_005713325.1	PFAM: Sporulation-related domain; KEGG: smd:Smed_1159 sporulation domain-containing protein
YP_005713326.1	PFAM: Glycoside hydrolase, family 3, N-terminal; KEGG: smd:Smed_1160 beta-N-acetylhexosaminidase
YP_005713327.1	PFAM: Prokaryotic chromosome segregation/condensation protein ScpA; KEGG: smd:Smed_1161 chromosome segregation and condensation protein ScpA
YP_005713328.1	KEGG: smd:Smed_1162 putative transcriptional regulator; TIGRFAM: Chromosome segregation/condensation protein ScpB, prokaryote; PFAM: Chromosome segregation/condensation protein ScpB, prokaryote
YP_005713329.1	PFAM: ABC transporter-like; KEGG: smd:Smed_1163 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_005713330.1	TIGRFAM: Twin-arginine translocation protein TatA/E; HAMAP: Twin-arginine translocation protein TatA/E; KEGG: smd:Smed_1164 twin arginine translocase protein A; PFAM: Bacterial sec-independent translocation protein MttA/Hcf106
YP_005713331.1	TIGRFAM: Twin-arginine translocation protein TatB; HAMAP: Twin-arginine translocation protein TatB; KEGG: smd:Smed_1165 sec-independent translocase; PFAM: Bacterial sec-independent translocation protein MttA/Hcf106
YP_005713332.1	KEGG: smd:Smed_1166 sec-independent protein translocase, TatC subunit; TIGRFAM: Twin arginine-targeting protein translocase, TatC; PFAM: Sec-independent periplasmic protein translocase
YP_005713333.1	PFAM: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain; Seryl-tRNA synthetase, class IIa, N-terminal; TIGRFAM: Seryl-tRNA synthetase, class IIa; HAMAP: Seryl-tRNA synthetase, class IIa; KEGG: smd:Smed_1167 seryl-tRNA synthetase
YP_005713334.1	TIGRFAM: Survival protein SurE-like phosphatase/nucleotidase; HAMAP: Survival protein SurE-like phosphatase/nucleotidase; KEGG: smd:Smed_1168 stationary phase survival protein SurE; PFAM: Survival protein SurE-like phosphatase/nucleotidase
YP_005713335.1	manually curated; KEGG: smd:Smed_1169 protein-L-isoaspartate O-methyltransferase; PFAM: Protein-L-isoaspartate(D-aspartate) O-methyltransferase
YP_005713336.1	KEGG: smd:Smed_1170 biotin-regulated protein
YP_005713337.1	KEGG: smd:Smed_1171 peptidase M23B; PFAM: Peptidase M23; Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding Lysin subgroup
YP_005713338.1	PFAM: Domain of unknown function DUF815; KEGG: smd:Smed_1172 hypothetical protein
YP_005713339.1	KEGG: smd:Smed_1173 preprotein translocase, YajC subunit; TIGRFAM: Preprotein translocase YajC; PFAM: Preprotein translocase YajC
YP_005713340.1	KEGG: smd:Smed_1174 bifunctional preprotein translocase subunit SecD/SecF; TIGRFAM: SecD export membrane protein; SecD/SecF/SecDF export membrane protein, bacteria; SecF protein; PFAM: Preprotein translocase, SecD/SecF/SecDF; SecD/SecF/SecDF export membrane protein, GG motif, N-terminal
YP_005713341.1	KEGG: smd:Smed_1175 hypothetical protein; manually curated; PFAM: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3
YP_005713342.1	PFAM: Squalene/phytoene synthase; KEGG: smd:Smed_1176 putative phytoene synthase protein
YP_005713343.1	KEGG: smd:Smed_1177 hypothetical protein
YP_005713344.1	PFAM: Glucose-inhibited division protein A-related; TIGRFAM: Folate-dependent ribothymidyl synthase; HAMAP: Folate-dependent ribothymidyl synthase; KEGG: smd:Smed_1178 tRNA (uracil-5-)-methyltransferase Gid
YP_005713345.1	PFAM: Protein of unknown function DUF1127; KEGG: smd:Smed_1179 hypothetical protein
YP_005713346.1	PFAM: Protein of unknown function DUF1127; KEGG: smd:Smed_1180 hypothetical protein
YP_005713347.1	TIGRFAM: Trigger factor; HAMAP: Trigger factor; KEGG: smd:Smed_1181 trigger factor; PFAM: Trigger factor, C-terminal, bacterial; Trigger factor, ribosome-binding, bacterial; Peptidyl-prolyl cis-trans isomerase, FKBP-type
YP_005713348.1	KEGG: smd:Smed_1182 glycine dehydrogenase; TIGRFAM: Glycine cleavage system P protein, homodimeric; PFAM: Glycine cleavage system P-protein, N-terminal
YP_005713349.1	TIGRFAM: Glycine cleavage H-protein, subgroup; HAMAP: Glycine cleavage H-protein; KEGG: smd:Smed_1183 glycine cleavage system protein H; PFAM: Glycine cleavage H-protein
YP_005713350.1	TIGRFAM: Glycine cleavage system T protein; KEGG: smd:Smed_1184 glycine cleavage system aminomethyltransferase T; PFAM: Glycine cleavage T-protein, N-terminal; Glycine cleavage T-protein, C-terminal barrel
YP_005713351.1	KEGG: smd:Smed_1185 hypothetical protein
YP_005713352.1	PFAM: DR1885-like metal-binding protein; GLE1, N-terminal, bacteria; KEGG: smd:Smed_1186 hypothetical protein
YP_005713353.1	KEGG: smd:Smed_1187 hypothetical protein
YP_005713356.1	KEGG: smd:Smed_1188 hypothetical protein
YP_005713357.1	PFAM: Glutathione S-transferase, N-terminal; Glutathione S-transferase, C-terminal; KEGG: ara:Arad_12012 glutathione S-transferase protein
YP_005713358.1	KEGG: rec:RHECIAT_CH0003351 hypothetical protein
YP_005713359.1	KEGG: rec:RHECIAT_CH0003350 hypothetical protein
YP_005713360.1	PFAM: Integrase, catalytic core; KEGG: rpe:RPE_2430 integrase catalytic subunit
YP_005713361.1	KEGG: rec:RHECIAT_CH0003348 hypothetical protein
YP_005713363.1	PFAM: PilT protein, N-terminal; KEGG: smd:Smed_1197 PilT domain-containing protein
YP_005713365.1	KEGG: smd:Smed_1201 hypothetical protein
YP_005713366.1	KEGG: smd:Smed_1202 ATPase central domain-containing protein; PFAM: ATPase, AAA-type, core; Peptidase M41; SMART: ATPase, AAA+ type, core
YP_005713367.1	KEGG: rlg:Rleg_6294 hypothetical protein
YP_005713368.1	TIGRFAM: DNA helicase, ATP-dependent, RecQ type; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Helicase, C-terminal; KEGG: rec:RHECIAT_CH0003318 putative DNA helicase protein; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal
YP_005713369.1	KEGG: ara:Arad_1660 hypothetical protein; PFAM: Protein of unknown function DUF1058; SMART: SH3-like domain, bacterial
YP_005713370.1	KEGG: ami:Amir_0301 Excalibur domain protein; PFAM: Excalibur calcium-binding domain; SMART: Excalibur calcium-binding domain
YP_005713371.1	manually curated; KEGG: rhi:NGR_b09910 succinoglycan biosynthesis protein ExoI
YP_005713372.1	PFAM: Outer membrane protein, OmpA/MotB, C-terminal; KEGG: rlg:Rleg_6821 OmpA/MotB domain protein
YP_005713373.1	KEGG: rlg:Rleg_6822 hypothetical protein
YP_005713374.1	KEGG: ara:Arad_2034 hypothetical protein
YP_005713375.1	KEGG: ara:Arad_2033 hypothetical protein
YP_005713376.1	manually curated; PFAM: Staphylococcal nuclease (SNase-like); KEGG: rlg:Rleg_6820 nuclease (SNase domain protein); SMART: Staphylococcal nuclease (SNase-like)
YP_005713378.1	KEGG: hip:CGSHiEE_05400 hypothetical protein
YP_005713379.1	KEGG: rec:RHECIAT_CH0003319 hypothetical protein
YP_005713380.1	KEGG: rle:pRL80097 hypothetical protein
YP_005713381.1	PFAM: DNA methylase, adenine-specific; KEGG: ara:Arad_4102 DNA methylase
YP_005713382.1	KEGG: ara:Arad_4099 hypothetical protein
YP_005713383.1	PFAM: Helicase, C-terminal; KEGG: ara:Arad_4098 helicase-like protein
YP_005713384.1	KEGG: ara:Arad_4097 hypothetical protein
YP_005713385.1	KEGG: rpb:RPB_2530 hypothetical protein
YP_005713387.1	PFAM: Mov34/MPN/PAD-1; KEGG: mxa:MXAN_7284 hypothetical protein
YP_005713388.1	PFAM: UBA/THIF-type NAD/FAD binding fold; KEGG: rsp:RSP_2047 ThiF family protein
YP_005713389.1	KEGG: rsp:RSP_2046 hypothetical protein
YP_005713390.1	KEGG: rsp:RSP_2045 hypothetical protein
YP_005713391.1	TIGRFAM: Ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent; KEGG: smd:Smed_1233 ribonucleotide-diphosphate reductase subunit alpha; PFAM: Ribonucleotide reductase class II vitamin B12-dependent; Ribonucleotide reductase large subunit, C-terminal
YP_005713392.1	PFAM: Protein of unknown function DUF72; KEGG: smd:Smed_1234 hypothetical protein
YP_005713393.1	TIGRFAM: Excinuclease ABC, A subunit; HAMAP: Excinuclease ABC, A subunit; KEGG: smd:Smed_1235 excinuclease ABC subunit A; PFAM: ABC transporter-like
YP_005713394.1	KEGG: smd:Smed_1236 single-stranded DNA-binding protein; TIGRFAM: Single-strand DNA-binding; PFAM: Primosome PriB/single-strand DNA-binding
YP_005713395.1	KEGG: smd:Smed_1240 multiple antibiotic resistance (MarC)-related protein; TIGRFAM: Multiple antibiotic resistance (MarC)-related; PFAM: Multiple antibiotic resistance (MarC)-related
YP_005713396.1	SMART: DNA topoisomerase, type IIA, subunit A/C-terminal; TIGRFAM: DNA gyrase, subunit A; KEGG: smd:Smed_1241 DNA gyrase subunit A; PFAM: DNA topoisomerase, type IIA, subunit A/C-terminal; DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel
YP_005713397.1	PFAM: Lytic transglycosylase-like, catalytic; KEGG: smd:Smed_1242 lytic transglycosylase catalytic
YP_005713398.1	KEGG: smd:Smed_1243 GCN5-related N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase (GNAT) domain
YP_005713399.1	KEGG: smd:Smed_1244 aminoglycoside/hydroxyurea antibiotic resistance kinase; PFAM: Aminoglycoside/hydroxyurea antibiotic resistance kinase
YP_005713400.1	KEGG: smd:Smed_1245 NADH:flavin oxidoreductase/NADH oxidase; PFAM: NADH:flavin oxidoreductase/NADH oxidase, N-terminal
YP_005713401.1	KEGG: smd:Smed_1246 regulatory protein ArsR; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR
YP_005713402.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: smd:Smed_1247 LysR family transcriptional regulator
YP_005713403.1	TIGRFAM: Thioredoxin reductase; KEGG: smd:Smed_1248 thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase
YP_005713404.1	KEGG: smd:Smed_1249 AsnC family transcriptional regulator; PFAM: Transcription regulator AsnC-type, C-terminal; SMART: Transcription regulator AsnC-type
YP_005713405.1	PFAM: Glycosyl transferase, family 2; KEGG: smd:Smed_1250 glycosyl transferase family protein
YP_005713406.1	PFAM: Glycosyl transferase, group 1; KEGG: smd:Smed_1251 phosphatidylserine decarboxylase
YP_005713407.1	PFAM: Glycosyl transferase, group 1; KEGG: smd:Smed_1252 phosphatidylserine decarboxylase
YP_005713408.1	PFAM: Glycosyl transferase, group 1; KEGG: smd:Smed_1253 glycosyl transferase group 1
YP_005713409.1	TIGRFAM: Transcription elongation factor GreA; HAMAP: Transcription elongation factor greA; KEGG: smd:Smed_1254 transcription elongation factor GreA; PFAM: Transcription elongation factor, GreA/GreB, C-terminal; Transcription elongation factor, GreA/GreB, N-terminal
YP_005713410.1	PFAM: Major facilitator superfamily MFS-1; KEGG: smd:Smed_1255 major facilitator transporter
YP_005713411.1	KEGG: smd:Smed_1256 hypothetical protein
YP_005713412.1	SMART: Methylglyoxal synthase-like domain; TIGRFAM: Carbamoyl-phosphate synthase, large subunit; KEGG: smd:Smed_1257 carbamoyl phosphate synthase large subunit; PFAM: Carbamoyl-phosphate synthetase, large subunit, ATP-binding; Carbamoyl-phosphate synthase, large subunit, N-terminal; Carbamoyl-phosphate synthetase, large subunit, oligomerisation; Methylglyoxal synthase-like domain
YP_005713413.1	PFAM: Alcohol dehydrogenase GroES-like; Alcohol dehydrogenase, C-terminal; KEGG: smd:Smed_1258 alcohol dehydrogenase; SMART: Polyketide synthase, enoylreductase
YP_005713414.1	PFAM: Uncharacterised protein family, zinc metallopeptidase putative; KEGG: smd:Smed_1259 protein of unknown function zinc metallopeptidase putative
YP_005713415.1	PFAM: Major facilitator superfamily MFS-1; KEGG: smd:Smed_1262 major facilitator transporter
YP_005713416.1	KEGG: smd:Smed_1263 MATE efflux family protein; TIGRFAM: Multi antimicrobial extrusion protein; PFAM: Multi antimicrobial extrusion protein
YP_005713417.1	manually curated; KEGG: smd:Smed_6023 transposase
YP_005713419.1	PFAM: Cytidylyltransferase; TIGRFAM: Coenzyme A biosynthesis protein; Cytidyltransferase-related; HAMAP: Coenzyme A biosynthesis protein; KEGG: smd:Smed_1264 phosphopantetheine adenylyltransferase
YP_005713420.1	PFAM: Peptidyl-prolyl cis-trans isomerase, cyclophilin-type; KEGG: smd:Smed_1265 peptidyl-prolyl cis-trans isomerase cyclophilin type
YP_005713421.1	PFAM: Peptidyl-prolyl cis-trans isomerase, cyclophilin-type; KEGG: smd:Smed_1266 peptidyl-prolyl cis-trans isomerase cyclophilin type
YP_005713422.1	KEGG: smd:Smed_1267 S-adenosylmethionine:tRNA ribosyltransferase-isomerase; TIGRFAM: Queuosine biosynthesis protein; PFAM: Queuosine biosynthesis protein
YP_005713423.1	PFAM: Queuine/other tRNA-ribosyltransferase; TIGRFAM: Queuine tRNA-ribosyltransferase; Queuine/other tRNA-ribosyltransferase; HAMAP: Queuine tRNA-ribosyltransferase; KEGG: smd:Smed_1268 queuine tRNA-ribosyltransferase
YP_005713424.1	KEGG: oan:Oant_3265 extracellular solute-binding protein; PFAM: Extracellular solute-binding protein, family 3; SMART: Extracellular solute-binding protein, family 3
YP_005713425.1	PFAM: Short-chain dehydrogenase/reductase SDR; SEC-C motif; KEGG: smd:Smed_1269 short-chain dehydrogenase/reductase SDR
YP_005713426.1	KEGG: smd:Smed_1270 hypothetical protein
YP_005713427.1	PFAM: Isoprenylcysteine carboxyl methyltransferase; KEGG: smd:Smed_1271 isoprenylcysteine carboxyl methyltransferase
YP_005713428.1	KEGG: smd:Smed_1272 putative lipoprotein
YP_005713430.1	PFAM: YkuD domain; KEGG: smd:Smed_1273 ErfK/YbiS/YcfS/YnhG family protein
YP_005713431.1	KEGG: smd:Smed_1274 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR
YP_005713432.1	PFAM: Major facilitator superfamily MFS-1; KEGG: smd:Smed_1275 major facilitator transporter
YP_005713433.1	KEGG: rhi:NGR_c15940 hypothetical protein
YP_005713434.1	PFAM: Signal transduction response regulator, C-terminal; Tetratricopeptide TPR-4; KEGG: mlo:mll4655 adenylate cyclase cya3; SMART: Signal transduction response regulator, C-terminal; Tetratricopeptide repeat
YP_005713435.1	PFAM: Glutathione-dependent formaldehyde-activating, GFA; KEGG: mes:Meso_1327 glutathione-dependent formaldehyde-activating, GFA
YP_005713436.1	KEGG: smd:Smed_6421 hypothetical protein
YP_005713438.1	KEGG: rhi:NGR_b15050 putative transposase
YP_005713439.1	KEGG: smd:Smed_1288 beta-lactamase domain-containing protein; PFAM: Beta-lactamase-like; SMART: Beta-lactamase-like
YP_005713440.1	KEGG: smd:Smed_1289 TatD family hydrolase; TIGRFAM: Deoxyribonuclease, TatD Mg-dependent, prokaryote; PFAM: Deoxyribonuclease, TatD-related
YP_005713441.1	PFAM: Aminoacyl-tRNA synthetase, class I (M); TIGRFAM: Methionyl-tRNA synthetase, class Ia; HAMAP: Methionyl-tRNA synthetase, class Ia; KEGG: smd:Smed_1290 methionyl-tRNA synthetase
YP_005713442.1	KEGG: rlg:Rleg_0637 hypothetical protein
YP_005713443.1	KEGG: smd:Smed_1291 DNA polymerase III subunit delta'
YP_005713444.1	PFAM: Thymidylate kinase; TIGRFAM: Thymidylate kinase; HAMAP: Thymidylate kinase; KEGG: smd:Smed_1292 thymidylate kinase
YP_005713445.1	PFAM: Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal; Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal; KEGG: smd:Smed_1293 serine-type D-Ala-D-Ala carboxypeptidase; SMART: Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal
YP_005713446.1	KEGG: smd:Smed_1294 rare lipoprotein A; TIGRFAM: Rare lipoprotein A, bacterial; PFAM: Barwin-related endoglucanase
YP_005713447.1	KEGG: smd:Smed_4829 hypothetical protein
YP_005713448.1	KEGG: rhi:NGR_b12560 hypothetical protein
YP_005713449.1	PFAM: Domain of unknown function DUF1254; Domain of unknown function DUF1214; KEGG: ppg:PputGB1_3030 hypothetical protein
YP_005713450.1	PFAM: Domain of unknown function DUF1254; Twin-arginine translocation pathway, signal sequence, bacterial/archaeal; Domain of unknown function DUF1214; KEGG: rme:Rmet_5000 hypothetical protein
YP_005713451.1	KEGG: smd:Smed_1352 hypothetical protein
YP_005713452.1	PFAM: Peptidase S24/S26A/S26B, conserved region; LexA, DNA-binding domain; TIGRFAM: Peptidase S24, LexA repressor; HAMAP: Peptidase S24, LexA repressor; KEGG: smd:Smed_1353 LexA repressor
YP_005713453.1	KEGG: smd:Smed_1354 hypothetical protein
YP_005713454.1	KEGG: smd:Smed_1355 putative transmembrane protein
YP_005713455.1	KEGG: smd:Smed_1356 hypothetical protein
YP_005713456.1	PFAM: Integrase, catalytic core, phage; KEGG: avi:Avi_3428 phage integrase protein
YP_005713457.1	PFAM: Protein of unknown function DUF2971; KEGG: mdi:METDI2606 hypothetical protein
YP_005713458.1	KEGG: bpy:Bphyt_3854 hypothetical protein
YP_005713459.1	KEGG: smd:Smed_6514 hypothetical protein
YP_005713460.1	PFAM: Transposase, IS66; KEGG: smd:Smed_6513 transposase IS66
YP_005713461.1	PFAM: Transposase (putative), IS66 Orf2-like; KEGG: smd:Smed_6512 IS66 Orf2 family protein
YP_005713462.1	PFAM: Transposase IS3/IS911family; KEGG: smd:Smed_6511 transposase IS3/IS911 family protein
YP_005713463.1	KEGG: smd:Smed_4834 hypothetical protein
YP_005713464.1	KEGG: smd:Smed_1307 hypothetical protein
YP_005713465.1	KEGG: rec:RHECIAT_CH0001887 hypothetical protein
YP_005713466.1	PFAM: Protein of unknown function DUF159; KEGG: xau:Xaut_0811 hypothetical protein
YP_005713467.1	PFAM: Protein of unknown function DUF3606; KEGG: smd:Smed_1687 hypothetical protein
YP_005713468.1	KEGG: rhi:NGR_b12560 hypothetical protein
YP_005713469.1	KEGG: smd:Smed_1634 hypothetical protein
YP_005713470.1	KEGG: rhi:NGR_c18810 hypothetical protein
YP_005713471.1	KEGG: smd:Smed_1636 putative transmembrane protein
YP_005713472.1	KEGG: smd:Smed_1639 hypothetical protein
YP_005713473.1	KEGG: smd:Smed_1873 hypothetical protein
YP_005713474.1	PFAM: Domain of unknown function DUF1983; KEGG: smd:Smed_1641 hypothetical protein
YP_005713475.1	KEGG: smd:Smed_1642 hypothetical protein
YP_005713476.1	PFAM: Protein of unknown function DUF2806; KEGG: spl:Spea_4100 membrane-fusion protein
YP_005713477.1	KEGG: smd:Smed_1644 hypothetical protein
YP_005713478.1	KEGG: smd:Smed_1645 hypothetical protein
YP_005713479.1	PFAM: Phage tail tape measure protein TP901, core region; KEGG: smd:Smed_1646 hypothetical protein
YP_005713480.1	KEGG: smd:Smed_1881 hypothetical protein
YP_005713482.1	KEGG: smd:Smed_1648 hypothetical protein
YP_005713483.1	PFAM: Phage major tail protein TP901-1; KEGG: smd:Smed_1649 phage major tail protein, TP901-1
YP_005713484.1	KEGG: smd:Smed_1650 hypothetical protein
YP_005713485.1	KEGG: smd:Smed_1651 hypothetical protein
YP_005713486.1	KEGG: smd:Smed_1652 hypothetical protein
YP_005713487.1	KEGG: smd:Smed_1653 hypothetical protein
YP_005713488.1	PFAM: Phage major capsid protein E; KEGG: smd:Smed_1654 phage major capsid protein E
YP_005713489.1	KEGG: smd:Smed_1655 hypothetical protein
YP_005713490.1	KEGG: smd:Smed_1656 hypothetical protein
YP_005713491.1	PFAM: Peptidase S49; KEGG: smd:Smed_1657 peptidase S49
YP_005713492.1	KEGG: smd:Smed_1658 lambda family phage portal protein; TIGRFAM: Phage portal protein, lambda; PFAM: Phage portal protein, lambda
YP_005713493.1	PFAM: Head-to-tail joining protein W, gpW; KEGG: smd:Smed_1659 hypothetical protein
YP_005713494.1	PFAM: Phage terminase GpA; KEGG: smd:Smed_1660 phage terminase GpA
YP_005713495.1	KEGG: smd:Smed_1661 hypothetical protein
YP_005713496.1	KEGG: smd:Smed_1662 hypothetical protein
YP_005713497.1	KEGG: smd:Smed_1663 NusG antitermination factor; PFAM: Transcription antitermination protein, NusG, N-terminal; SMART: Transcription antitermination protein, NusG, N-terminal
YP_005713498.1	KEGG: smd:Smed_1664 hypothetical protein
YP_005713499.1	PFAM: C-5 cytosine methyltransferase; KEGG: sit:TM1040_1691 C-5 cytosine-specific DNA methylase
YP_005713500.1	KEGG: smd:Smed_1666 hypothetical protein
YP_005713501.1	PFAM: DNA N-6-adenine-methyltransferase; KEGG: bmj:BMULJ_04682 bacteriophage DNA methylase
YP_005713502.1	PFAM: MT-A70; KEGG: smd:Smed_1667 MT-A70 family protein
YP_005713503.1	KEGG: smd:Smed_1668 hypothetical protein
YP_005713504.1	KEGG: oan:Oant_2320 hypothetical protein
YP_005713505.1	KEGG: rlt:Rleg2_2457 peptidase S24 and S26 domain protein; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3
YP_005713506.1	KEGG: rlt:Rleg2_2459 hypothetical protein
YP_005713507.1	KEGG: rlt:Rleg2_2460 hypothetical protein
YP_005713508.1	KEGG: smd:Smed_1674 hypothetical protein
YP_005713509.1	KEGG: smd:Smed_1675 hypothetical protein
YP_005713510.1	KEGG: smd:Smed_1676 hypothetical protein
YP_005713512.1	KEGG: xau:Xaut_3671 hypothetical protein
YP_005713513.1	PFAM: Protein of unknown function DUF1643; KEGG: smd:Smed_1928 hypothetical protein
YP_005713515.1	KEGG: smd:Smed_1677 hypothetical protein
YP_005713516.1	KEGG: smd:Smed_1678 hypothetical protein
YP_005713517.1	KEGG: smd:Smed_1679 hypothetical protein
YP_005713519.1	KEGG: rva:Rvan_3280 hypothetical protein
YP_005713520.1	KEGG: rlt:Rleg2_0707 ethyl tert-butyl ether degradation EthD; TIGRFAM: Ethyl tert-butyl ether degradation EthD; PFAM: Ethyl tert-butyl ether degradation EthD
YP_005713521.1	PFAM: Small multidrug resistance protein; KEGG: smd:Smed_1360 small multidrug resistance protein
YP_005713522.1	PFAM: Small multidrug resistance protein; KEGG: smd:Smed_1361 small multidrug resistance protein
YP_005713523.1	KEGG: pde:Pden_3176 hypothetical protein
YP_005713524.1	TIGRFAM: Transcription regulator AbrB; PFAM: Transcription regulator AbrB/SpoV, predicted; KEGG: pde:Pden_3177 AbrB family transcriptional regulator; SMART: Transcription regulator AbrB/SpoV, predicted
YP_005713525.1	KEGG: smd:Smed_1362 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR
YP_005713526.1	KEGG: smd:Smed_1363 cysteine synthase A; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit
YP_005713527.1	KEGG: smd:Smed_1364 threonyl/alanyl tRNA synthetase SAD; PFAM: Threonyl/alanyl tRNA synthetase, SAD; Alanyl-tRNA synthetase, class IIc, N-terminal; SMART: Threonyl/alanyl tRNA synthetase, SAD
YP_005713528.1	PFAM: Rhodanese-like; KEGG: smd:Smed_1365 rhodanese domain-containing protein; SMART: Rhodanese-like
YP_005713529.1	PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: smd:Smed_1366 GCN5-related N-acetyltransferase
YP_005713530.1	PFAM: Protein of unknown function DUF1203; KEGG: smd:Smed_1367 hypothetical protein
YP_005713531.1	TIGRFAM: Alanine dehydrogenase/pyridine nucleotide transhydrogenase; KEGG: smd:Smed_1368 alanine dehydrogenase; PFAM: Alanine dehydrogenase/PNT, C-terminal; Alanine dehydrogenase/PNT, N-terminal
YP_005713532.1	KEGG: smd:Smed_1369 AsnC family transcriptional regulator; PFAM: Transcription regulator AsnC-type, C-terminal; HTH transcriptional regulator, MarR; SMART: Transcription regulator AsnC-type
YP_005713533.1	KEGG: rhi:NGR_c14900 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein; PFAM: 5'-Nucleotidase, C-terminal; Metallo-dependent phosphatase
YP_005713534.1	PFAM: Transcription activator HlyU; KEGG: smd:Smed_1372 hypothetical protein
YP_005713535.1	KEGG: smd:Smed_1373 threonine dehydratase; TIGRFAM: Threonine dehydratase; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit; Threonine dehydratase, C-terminal
YP_005713536.1	PFAM: Cation transporter; KEGG: smd:Smed_1374 cation transporter
YP_005713537.1	KEGG: smd:Smed_1375 hypothetical protein
YP_005713538.1	PFAM: YCII-related; KEGG: smd:Smed_1379 DGPFAETKE family protein
YP_005713539.1	KEGG: smd:Smed_1380 hypothetical protein
YP_005713540.1	KEGG: smd:Smed_1381 hypothetical protein
YP_005713541.1	KEGG: smd:Smed_1382 hypothetical protein
YP_005713542.1	KEGG: smd:Smed_1383 hypothetical protein
YP_005713543.1	TIGRFAM: Flavoprotein WrbA; HAMAP: Flavoprotein WrbA; KEGG: smd:Smed_1384 TrpR binding protein WrbA; PFAM: Flavodoxin/nitric oxide synthase
YP_005713544.1	KEGG: smd:Smed_1385 molybdopterin binding domain-containing protein; PFAM: Molybdopterin binding; SMART: Molybdopterin binding
YP_005713545.1	HAMAP: Xanthine phosphoribosyltransferase; KEGG: smd:Smed_1386 xanthine-guanine phosphoribosyltransferase; PFAM: Phosphoribosyltransferase
YP_005713546.1	KEGG: smd:Smed_1387 carbohydrate kinase, YjeF related protein; TIGRFAM: Uncharacterised protein family, carbohydrate kinase-related; YjeF-related protein, N-terminal; PFAM: YjeF-related protein, N-terminal; Uncharacterised protein family, carbohydrate kinase-related
YP_005713547.1	KEGG: rhi:NGR_c14750 nitrogen regulatory protein P-II; PFAM: Nitrogen regulatory protein PII; SMART: Nitrogen regulatory protein PII
YP_005713548.1	KEGG: smd:Smed_1389 glutamine synthetase, type I; TIGRFAM: Glutamine synthetase type I; PFAM: Glutamine synthetase, catalytic domain; Glutamine synthetase, beta-Grasp
YP_005713549.1	KEGG: smd:Smed_1390 hemimethylated DNA binding protein; TIGRFAM: Hemimethylated DNA-binding domain; PFAM: Hemimethylated DNA-binding domain
YP_005713550.1	PFAM: Invasion associated locus B; KEGG: smd:Smed_1396 invasion associated locus B family protein
YP_005713551.1	PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: smd:Smed_1397 extracellular solute-binding protein
YP_005713552.1	PFAM: DSBA-like thioredoxin domain; KEGG: smd:Smed_1398 DsbA oxidoreductase
YP_005713553.1	KEGG: pfl:PFL_0323 AraC family transcriptional regulator; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain
YP_005713554.1	PFAM: Sulfatase; KEGG: req:REQ_11530 sulfatase
YP_005713555.1	PFAM: Protein of unknown function DUF900, hydrolase-like; KEGG: rhi:NGR_b05050 hypothetical protein
YP_005713556.1	KEGG: atu:Atu8099 hypothetical protein
YP_005713557.1	TIGRFAM: Exodeoxyribonuclease III xth; AP endonuclease, family 1; KEGG: atu:Atu5048 exodeoxyribonuclease III; PFAM: Endonuclease/exonuclease/phosphatase
YP_005713558.1	KEGG: smd:Smed_4884 hypothetical protein
YP_005713560.1	TIGRFAM: Transcription-repair coupling factor; PFAM: Transcription factor CarD; DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Helicase, C-terminal; Transcription-repair-coupling factor domain; KEGG: smd:Smed_1399 transcription-repair coupling factor; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal
YP_005713561.1	PFAM: Protein of unknown function DUF339; KEGG: smd:Smed_1400 hypothetical protein
YP_005713562.1	TIGRFAM: DNA helicase, ATP-dependent, RecG; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Nucleic acid binding, OB-fold, tRNA/helicase-type; Helicase, C-terminal; KEGG: smd:Smed_1401 ATP-dependent DNA helicase RecG; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal
YP_005713563.1	PFAM: Protein of unknown function DUF502; KEGG: smd:Smed_1402 hypothetical protein
YP_005713564.1	PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: smd:Smed_1403 GCN5-related N-acetyltransferase
YP_005713565.1	PFAM: Glutamine amidotransferase, class-II; Sugar isomerase (SIS); TIGRFAM: Glucosamine-fructose-6-phosphate aminotransferase, isomerising; HAMAP: Glucosamine-fructose-6-phosphate aminotransferase, isomerising; KEGG: smd:Smed_1404 glucosamine--fructose-6-phosphate aminotransferase
YP_005713566.1	PFAM: Nucleotidyl transferase; Bacterial transferase hexapeptide repeat; TIGRFAM: Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase; HAMAP: Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase; KEGG: smd:Smed_1405 bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase
YP_005713567.1	KEGG: smd:Smed_1406 sodium-dependent inorganic phosphate (Pi) transporter; TIGRFAM: Na/Pi-cotransporter; PFAM: Na/Pi-cotransporter; PhoU
YP_005713568.1	KEGG: smd:Smed_1407 putative peptidyl-prolyl cis-trans isomerase protein
YP_005713569.1	TIGRFAM: Anthranilate phosphoribosyl transferase; KEGG: smd:Smed_1408 anthranilate phosphoribosyltransferase; PFAM: Glycosyl transferase, family 3; Glycosyl transferase, family 3, N-terminal
YP_005713570.1	KEGG: smd:Smed_1409 indole-3-glycerol-phosphate synthase; PFAM: Indole-3-glycerol phosphate synthase
YP_005713571.1	KEGG: smd:Smed_1410 molybdenum cofactor biosynthesis protein MoaC; TIGRFAM: Molybdenum cofactor biosynthesis C; PFAM: Molybdopterin cofactor biosynthesis C (MoaC) domain
YP_005713572.1	TIGRFAM: Molybdenum cofactor synthesis; PFAM: MoeA, N-terminal and linker domain; MoeA, C-terminal, domain IV; Molybdopterin binding; KEGG: smd:Smed_1411 molybdenum cofactor synthesis domain-containing protein; SMART: Molybdopterin binding
YP_005713573.1	KEGG: smd:Smed_1412 hypothetical protein
YP_005713574.1	KEGG: smd:Smed_1413 hypothetical protein; PFAM: Domain of unknown function DUF21; Cystathionine beta-synthase, core; Transporter-associated domain; SMART: Cystathionine beta-synthase, core
YP_005713575.1	KEGG: smd:Smed_1414 GntR domain-containing protein; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: GntR, C-terminal; HTH transcriptional regulator, GntR
YP_005713576.1	PFAM: Basic membrane lipoprotein; KEGG: smd:Smed_1415 basic membrane lipoprotein
YP_005713577.1	PFAM: ABC transporter permease; KEGG: smd:Smed_1416 inner-membrane translocator
YP_005713578.1	PFAM: ABC transporter permease; KEGG: smd:Smed_1417 inner-membrane translocator
YP_005713579.1	PFAM: ABC transporter-like; KEGG: smd:Smed_1418 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_005713580.1	KEGG: smd:Smed_1419 alcohol dehydrogenase; PFAM: Alcohol dehydrogenase, C-terminal; Alcohol dehydrogenase GroES-like
YP_005713581.1	KEGG: smd:Smed_1420 phosphatidylcholine synthase; PFAM: CDP-alcohol phosphatidyltransferase
YP_005713582.1	KEGG: smd:Smed_1421 2-octaprenyl-6-methoxyphenyl hydroxylase; TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6; PFAM: FAD dependent oxidoreductase
YP_005713583.1	PFAM: Auxin efflux carrier; KEGG: smd:Smed_1422 auxin efflux carrier
YP_005713584.1	PFAM: Cytochrome c assembly protein, transmembrane domain; KEGG: smd:Smed_1423 cytochrome c biogenesis protein transmembrane region
YP_005713586.1	KEGG: smd:Smed_1445 hypothetical protein
YP_005713587.1	manually curated; KEGG: smd:Smed_2877 putative transmembrane protein
YP_005713589.1	KEGG: smd:Smed_1425 hypothetical protein
YP_005713590.1	KEGG: smd:Smed_4773 hypothetical protein
YP_005713591.1	KEGG: smd:Smed_1429 putative signal peptide protein
YP_005713592.1	PFAM: Protein of unknown function DUF1236; KEGG: smd:Smed_1430 hypothetical protein
YP_005713593.1	PFAM: Protein of unknown function DUF1236; KEGG: smd:Smed_1431 hypothetical protein
YP_005713594.1	KEGG: smd:Smed_1432 hypothetical protein
YP_005713595.1	KEGG: smd:Smed_1433 AraC family transcriptional regulator; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain
YP_005713596.1	PFAM: Porin, alpha proteobacteria type; KEGG: smd:Smed_1434 porin
YP_005713597.1	KEGG: smd:Smed_1435 putative signal peptide protein
YP_005713598.1	KEGG: smd:Smed_1436 hypothetical protein
YP_005713599.1	PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: smd:Smed_1437 short-chain dehydrogenase/reductase SDR; SMART: Polyketide synthase/Fatty acid synthase, KR
YP_005713600.1	KEGG: smd:Smed_1438 acyl-CoA synthetase; PFAM: AMP-dependent synthetase/ligase
YP_005713601.1	KEGG: smd:Smed_1439 acetyl-CoA acetyltransferase; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; Thiolase, C-terminal
YP_005713602.1	KEGG: smd:Smed_1440 regulatory protein IclR; PFAM: Transcription regulator IclR, N-terminal; Transcription regulator IclR, C-terminal; SMART: Transcription regulator IclR, N-terminal
YP_005713603.1	KEGG: smd:Smed_1441 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR
YP_005713604.1	KEGG: smd:Smed_1442 TRAP dicarboxylate transporter, DctP subunit; TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: Extracellular solute-binding protein, family 7, bacteria
YP_005713605.1	PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: smd:Smed_1443 TRAP C4-dicarboxylate transport system permease DctM subunit
YP_005713606.1	PFAM: Xylose isomerase, TIM barrel domain; KEGG: pjd:Pjdr2_3667 xylose isomerase domain protein TIM barrel
YP_005713607.1	KEGG: mrd:Mrad2831_3001 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR
YP_005713608.1	PFAM: Transketolase-like, pyrimidine-binding domain; Transketolase, C-terminal; KEGG: ppf:Pput_5275 transketolase, central region; SMART: Transketolase-like, pyrimidine-binding domain
YP_005713609.1	KEGG: mlo:mll5765 transketolase; PFAM: Transketolase, N-terminal
YP_005713610.1	KEGG: lch:Lcho_0405 TRAP dicarboxylate transporter, DctP subunit; TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: Extracellular solute-binding protein, family 7, bacteria
YP_005713611.1	KEGG: lch:Lcho_4273 TRAP dicarboxylate transporter, DctM subunit; TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit
YP_005713612.1	KEGG: mno:Mnod_4384 6-phosphogluconate dehydrogenase NAD-binding; PFAM: 6-phosphogluconate dehydrogenase, NAD-binding
YP_005713613.1	PFAM: Transposase, mutator type; KEGG: sjp:SJA_P2-00250 putative transposase
YP_005713614.1	KEGG: xfn:XfasM23_1995 hypothetical protein; PFAM: Beta-lactamase-like; SMART: Beta-lactamase-like
YP_005713615.1	KEGG: ret:RHE_PE00221 hypothetical protein; PFAM: Aminotransferase, class V/Cysteine desulfurase
YP_005713616.1	KEGG: ret:RHE_PE00222 AsnC family transcriptional regulator; PFAM: Transcription regulator AsnC-type, C-terminal; SMART: Transcription regulator AsnC-type
YP_005713617.1	KEGG: pmy:Pmen_4404 choline-glycine betaine transporter-like protein
YP_005713618.1	KEGG: smd:Smed_4461 putative signal peptide protein
YP_005713619.1	PFAM: Protein of unknown function DUF924; KEGG: bbr:BB2250 hypothetical protein
YP_005713620.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: rlg:Rleg_2547 transcriptional regulator, LysR family
YP_005713621.1	KEGG: smd:Smed_5213 hypothetical protein
YP_005713623.1	KEGG: rhi:NGR_c05540 hypothetical protein
YP_005713624.1	PFAM: NADH dehydrogenase ubiquinone Fe-S protein 4, mitochondrial; KEGG: smd:Smed_1447 ETC complex I subunit region
YP_005713625.1	PFAM: Protein of unknown function DUF192; KEGG: smd:Smed_1448 hypothetical protein
YP_005713626.1	KEGG: smd:Smed_1449 cold-shock DNA-binding domain-containing protein; PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein
YP_005713627.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: smd:Smed_1450 glyoxalase/bleomycin resistance protein/dioxygenase
YP_005713628.1	PFAM: Peptidase M15A, C-terminal; KEGG: smd:Smed_1451 peptidase M15A
YP_005713629.1	KEGG: smd:Smed_1452 single-stranded-DNA-specific exonuclease RecJ; TIGRFAM: Bacterial RecJ exonuclease; PFAM: Phosphoesterase, RecJ-like; Phosphoesterase, DHHA1
YP_005713630.1	PFAM: Homoserine dehydrogenase, catalytic; Aspartate/homoserine dehydrogenase, NAD-binding; Amino acid-binding ACT; KEGG: smd:Smed_1453 homoserine dehydrogenase
YP_005713631.1	KEGG: smd:Smed_1454 aminotransferase; PFAM: Aminotransferase, class I/classII
YP_005713632.1	KEGG: smd:Smed_1455 hypothetical protein
YP_005713633.1	KEGG: smd:Smed_1456 poly(R)-hydroxyalkanoic acid synthase, class I; TIGRFAM: Poly(R)-hydroxyalkanoic acid synthase, class I; PFAM: Poly-beta-hydroxybutyrate polymerase, N-terminal; Alpha/beta hydrolase fold-1
YP_005713634.1	TIGRFAM: Sugar fermentation stimulation protein; HAMAP: Sugar fermentation stimulation protein; KEGG: smd:Smed_1457 sugar fermentation stimulation protein A; PFAM: Sugar fermentation stimulation protein
YP_005713635.1	TIGRFAM: Peptidase M24A, methionine aminopeptidase, subfamily 1; KEGG: smd:Smed_1458 methionine aminopeptidase; PFAM: Peptidase M24, structural domain
YP_005713636.1	KEGG: smd:Smed_1459 DNA repair protein RadC; TIGRFAM: Uncharacterised protein family UPF0758; PFAM: Uncharacterised protein family UPF0758
YP_005713637.1	KEGG: smd:Smed_1462 soluble pyridine nucleotide transhydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation
YP_005713638.1	KEGG: smd:Smed_1463 FeS assembly scaffold SufA; TIGRFAM: SUF system FeS cluster assembly, SufA scaffold; FeS cluster insertion; PFAM: FeS cluster biogenesis
YP_005713639.1	KEGG: smd:Smed_1464 FeS assembly SUF system protein; TIGRFAM: SUF system FeS cluster assembly associated; PFAM: Domain of unknown function DUF59
YP_005713640.1	TIGRFAM: Cysteine desulfurase, SufS; KEGG: smd:Smed_1465 SufS subfamily cysteine desulfurase; PFAM: Aminotransferase, class V/Cysteine desulfurase
YP_005713641.1	KEGG: smd:Smed_1466 FeS assembly protein SufD; TIGRFAM: SUF system FeS cluster assembly, SufD; PFAM: SUF system FeS cluster assembly, SufBD
YP_005713642.1	TIGRFAM: ATPase SufC, SUF system FeS cluster assembly; PFAM: ABC transporter-like; KEGG: smd:Smed_1467 FeS assembly ATPase SufC; SMART: ATPase, AAA+ type, core
YP_005713643.1	KEGG: smd:Smed_1468 cysteine desulfurase activator complex subunit SufB; TIGRFAM: SUF system FeS cluster assembly, SufB; PFAM: SUF system FeS cluster assembly, SufBD
YP_005713644.1	KEGG: smd:Smed_1469 aminotransferase class V; PFAM: Aminotransferase, class V/Cysteine desulfurase
YP_005713645.1	KEGG: smd:Smed_1470 hypothetical protein
YP_005713646.1	KEGG: smd:Smed_1472 anhydro-N-acetylmuramic acid kinase; HAMAP: Anhydro-N-acetylmuramic acid kinase; PFAM: Anhydro-N-acetylmuramic acid kinase
YP_005713647.1	PFAM: Aminoacyl-tRNA synthetase, class Ib; RNA-binding S4; TIGRFAM: Tyrosyl-tRNA synthetase, class Ib; HAMAP: Tyrosyl-tRNA synthetase, class Ib; KEGG: smd:Smed_1473 tyrosyl-tRNA synthetase
YP_005713648.1	KEGG: smd:Smed_1474 hypothetical protein
YP_005713649.1	PFAM: Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant; KEGG: smd:Smed_1475 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen
YP_005713650.1	PFAM: Protein of unknown function DUF455; KEGG: smd:Smed_1476 hypothetical protein
YP_005713651.1	PFAM: Peptidase M23; KEGG: smd:Smed_1477 peptidase M23B
YP_005713652.1	KEGG: smd:Smed_1478 DEAD/DEAH box helicase domain-containing protein; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal
YP_005713653.1	PFAM: NUDIX hydrolase domain; KEGG: smd:Smed_1479 NUDIX hydrolase
YP_005713654.1	PFAM: TfoX, N-terminal; KEGG: smd:Smed_1480 TfoX domain-containing protein
YP_005713655.1	KEGG: smd:Smed_1481 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; PFAM: Molybdopterin binding; 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; SMART: Molybdopterin binding
YP_005713656.1	KEGG: smd:Smed_1482 xanthine dehydrogenase accessory factor
YP_005713657.1	PFAM: XdhC- CoxI; KEGG: smd:Smed_1483 hypothetical protein
YP_005713658.1	PFAM: vWA containing CoxE-like; KEGG: smd:Smed_1484 VWA containing CoxE family protein
YP_005713659.1	PFAM: ATPase, AAA-5; KEGG: smd:Smed_1485 ATPase
YP_005713660.1	KEGG: smd:Smed_1486 flavin reductase domain-containing protein; PFAM: Flavin reductase-like, FMN-binding; SMART: Flavin reductase-like, FMN-binding
YP_005713661.1	PFAM: Extracellular ligand-binding receptor; KEGG: smd:Smed_1487 extracellular ligand-binding receptor
YP_005713662.1	PFAM: Peptidase S58, DmpA; KEGG: smd:Smed_1488 peptidase S58 DmpA
YP_005713663.1	TIGRFAM: Ribulose-phosphate 3-epimerase; KEGG: smd:Smed_1489 ribulose-phosphate 3-epimerase; PFAM: Ribulose-phosphate 3-epimerase
YP_005713664.1	PFAM: Protein of unknown function DUF2259, secreted; KEGG: smd:Smed_1490 hypothetical protein
YP_005713665.1	KEGG: smd:Smed_1491 hypothetical protein
YP_005713666.1	KEGG: rhi:NGR_c15170 adenylosuccinate lyase; TIGRFAM: Adenylosuccinate lyase; PFAM: Lyase 1, N-terminal; Adenylosuccinate lyase C-terminal metazoa/fungi
YP_005713667.1	PFAM: Type IV pilus assembly PilZ; KEGG: smd:Smed_1493 type IV pilus assembly PilZ
YP_005713668.1	PFAM: Protein of unknown function DUF2189, transmembrane; KEGG: smd:Smed_1494 hypothetical protein
YP_005713669.1	PFAM: Protein of unknown function DUF1234; KEGG: smd:Smed_1495 hypothetical protein
YP_005713670.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: aex:Astex_2405 transcriptional regulator, LysR family
YP_005713671.1	PFAM: N-acetylglucosaminyl phosphatidylinositol deacetylase; KEGG: bpt:Bpet3606 hypothetical protein
YP_005713672.1	KEGG: ara:Arad_2915 hypothetical protein; TIGRFAM: 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase; PFAM: Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase
YP_005713673.1	PFAM: Phosphogluconate dehydrogenase, NAD-binding, putative, C-terminal; 6-phosphogluconate dehydrogenase, NAD-binding; KEGG: mes:Meso_1079 6-phosphogluconate dehydrogenase, NAD-binding
YP_005713674.1	PFAM: Protein of unknown function DUF112, transmembrane; KEGG: aco:Amico_0145 protein of unknown function DUF112 transmembrane
YP_005713675.1	KEGG: ipo:Ilyop_2142 hypothetical protein
YP_005713677.1	PFAM: PrpF protein; KEGG: bsb:Bresu_2120 protein of unknown function DUF453
YP_005713678.1	PFAM: Protein of unknown function DUF1476; KEGG: smd:Smed_1497 hypothetical protein
YP_005713679.1	PFAM: SAICAR synthetase; TIGRFAM: SAICAR synthetase; HAMAP: SAICAR synthetase; KEGG: rhi:NGR_c16190 phosphoribosylaminoimidazole-succinocarboxamide synthase
YP_005713680.1	KEGG: rhi:NGR_c16200 phosphoribosylformylglycinamidine synthase subunit PurS; TIGRFAM: Phosphoribosylformylglycinamidine synthetase, PurS subunit; PFAM: Phosphoribosylformylglycinamidine synthetase, PurS subunit
YP_005713681.1	PFAM: CobB/CobQ-like glutamine amidotransferase; TIGRFAM: Phosphoribosylformylglycinamidine synthase I; HAMAP: Phosphoribosylformylglycinamidine synthase I; KEGG: smd:Smed_1500 phosphoribosylformylglycinamidine synthase I
YP_005713682.1	KEGG: smd:Smed_1501 hypothetical protein
YP_005713683.1	manually curated; KEGG: smd:Smed_1502 hypothetical protein
YP_005713684.1	KEGG: smd:Smed_1503 GntR family transcriptional regulator; PFAM: Aminotransferase, class I/classII; HTH transcriptional regulator, GntR; SMART: HTH transcriptional regulator, GntR
YP_005713685.1	PFAM: Lipid A 3-O-deacylase-related; KEGG: smd:Smed_1504 hypothetical protein
YP_005713686.1	PFAM: AIR synthase-related protein, C-terminal; AIR synthase-related protein; TIGRFAM: Phosphoribosylformylglycinamidine synthase II; HAMAP: Phosphoribosylformylglycinamidine synthase II; KEGG: smd:Smed_1505 phosphoribosylformylglycinamidine synthase II
YP_005713687.1	PFAM: BolA protein; KEGG: smd:Smed_1506 BolA family protein
YP_005713688.1	KEGG: rhi:NGR_c16280 hypothetical protein
YP_005713689.1	KEGG: smd:Smed_1508 glutaredoxin-like protein; TIGRFAM: Monothiol glutaredoxin-related; PFAM: Glutaredoxin
YP_005713690.1	KEGG: smd:Smed_1509 Bcr/CflA subfamily drug resistance transporter; TIGRFAM: Drug resistance transporter Bcr/CflA subfamily; PFAM: Major facilitator superfamily MFS-1
YP_005713691.1	PFAM: Major facilitator superfamily MFS-1; KEGG: smd:Smed_1510 major facilitator transporter
YP_005713692.1	PFAM: Inositol monophosphatase; KEGG: smd:Smed_1511 inositol monophosphatase
YP_005713693.1	KEGG: smd:Smed_1512 C32 tRNA thiolase; HAMAP: 2-thiocytidine tRNA biosynthesis protein, TtcA; PFAM: tRNA(Ile)-lysidine/2-thiocytidine synthase
YP_005713694.1	PFAM: Glutaminase; TIGRFAM: Glutaminase; HAMAP: Glutaminase; KEGG: smd:Smed_1513 glutaminase
YP_005713695.1	TIGRFAM: Ribosomal protein S4, bacterial-type; PFAM: RNA-binding S4; Ribosomal protein S4/S9, N-terminal; KEGG: smd:Smed_1514 30S ribosomal protein S4; SMART: RNA-binding S4
YP_005713696.1	SMART: ATPase, AAA+ type, core; KEGG: smd:Smed_1515 AAA ATPase
YP_005713697.1	PFAM: Asp/Glu/hydantoin racemase; TIGRFAM: Glutamate racemase; HAMAP: Glutamate racemase; KEGG: smd:Smed_1516 glutamate racemase
YP_005713698.1	KEGG: smd:Smed_1517 RNA methyltransferase; TIGRFAM: RNA methyltransferase TrmH, group 1; PFAM: tRNA/rRNA methyltransferase, SpoU
YP_005713699.1	KEGG: smd:Smed_1518 hypothetical protein
YP_005713700.1	TIGRFAM: Isocitrate dehydrogenase NADP-dependent, eukaryotic; KEGG: smd:Smed_1519 isocitrate dehydrogenase; PFAM: Isocitrate/isopropylmalate dehydrogenase
YP_005713701.1	KEGG: mlo:mll6710 transcriptional regulator; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain
YP_005713702.1	KEGG: pct:PC1_3491 hypothetical protein; PFAM: Cell wall assembly/cell proliferation coordinating protein, KNR4-like; SMART: Cell wall assembly/cell proliferation coordinating protein, KNR4-like
YP_005713703.1	PFAM: Domain of unknown function DUF1254; Domain of unknown function DUF1214; KEGG: bpy:Bphyt_6665 protein of unknown function DUF1214
YP_005713704.1	PFAM: Domain of unknown function DUF1254; Domain of unknown function DUF1214; KEGG: vpa:VPA0735 hypothetical protein
YP_005713705.1	PFAM: Sulphate transporter; Sulphate transporter/antisigma-factor antagonist STAS; KEGG: rhi:NGR_c16450 sulfate transporter family protein
YP_005713706.1	TIGRFAM: Alanyl-tRNA synthetase, class IIc; PFAM: Alanyl-tRNA synthetase, class IIc, N-terminal; Threonyl/alanyl tRNA synthetase, SAD; Phosphoesterase, DHHA1; KEGG: smd:Smed_1521 alanyl-tRNA synthetase; SMART: Threonyl/alanyl tRNA synthetase, SAD
YP_005713707.1	SMART: ATPase, AAA+ type, core; TIGRFAM: DNA recombination and repair protein RecA; KEGG: smd:Smed_1522 recombinase A; HAMAP: DNA recombination and repair protein RecA; PFAM: DNA recombination and repair protein RecA
YP_005713708.1	PFAM: Carbohydrate/purine kinase; KEGG: rhi:NGR_c16480 possible sugar kinase, ribokinase family
YP_005713709.1	KEGG: smd:Smed_1524 indigoidine synthase A family protein; HAMAP: Pseudouridine-5'-phosphate glycosidase; PFAM: Pseudouridine-5'-phosphate glycosidase
YP_005713710.1	TIGRFAM: PAS; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; PAS fold; PAS fold-4; Signal transduction response regulator, receiver domain; KEGG: smd:Smed_1525 multi-sensor hybrid histidine kinase; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; PAS; Signal transduction response regulator, receiver domain
YP_005713711.1	KEGG: smd:Smed_1526 putative CheA signal transduction histidine kinase
YP_005713712.1	TIGRFAM: RNA polymerase-binding, DksA; KEGG: smd:Smed_1527 TraR/DksA family transcriptional regulator
YP_005713713.1	KEGG: smd:Smed_1528 putative phosphohistidine phosphatase, SixA; PFAM: Histidine phosphatase superfamily, clade-1; SMART: Histidine phosphatase superfamily, clade-1
YP_005713714.1	PFAM: Protein of unknown function DUF463, YcjX-like protein; KEGG: smd:Smed_1529 protein of unknown function DUF463 YcjX family protein
YP_005713715.1	KEGG: smd:Smed_1530 hypothetical protein; TIGRFAM: Uncharacterised protein family UPF0283; PFAM: Protein of unknown function DUF697
YP_005713716.1	KEGG: smd:Smed_1531 putative signal peptide protein
YP_005713717.1	TIGRFAM: 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK; KEGG: smd:Smed_1532 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK
YP_005713718.1	TIGRFAM: Dihydroneopterin aldolase subgroup; Dihydroneopterin aldolase; PFAM: Dihydroneopterin aldolase; KEGG: smd:Smed_1533 dihydroneopterin aldolase; SMART: Dihydroneopterin aldolase
YP_005713719.1	TIGRFAM: Dihydropteroate synthase; KEGG: smd:Smed_1534 dihydropteroate synthase; PFAM: Pterin-binding
YP_005713720.1	PFAM: Protein of unknown function DUF922; KEGG: smd:Smed_1535 hypothetical protein
YP_005713722.1	PFAM: Ferredoxin; KEGG: smd:Smed_1536 ferredoxin
YP_005713723.1	PFAM: Signal transduction histidine kinase, phosphotransfer (Hpt) domain; KEGG: smd:Smed_1537 Hpt domain-containing protein
YP_005713724.1	PFAM: Apolipoprotein A1/A4/E; KEGG: smd:Smed_1538 chemotaxis sensory transducer
YP_005713725.1	PFAM: Cytochrome c1; KEGG: smd:Smed_1539 cytochrome c1
YP_005713726.1	PFAM: Cytochrome b/b6, N-terminal; Cytochrome b/b6, C-terminal; KEGG: smd:Smed_1540 cytochrome b/b6 domain-containing protein
YP_005713727.1	TIGRFAM: Ubiquinol-cytochrome c reductase, iron-sulphur subunit; Twin-arginine translocation pathway, signal sequence; KEGG: smd:Smed_1541 ubiquinol-cytochrome c reductase, iron-sulfur subunit; PFAM: Ubiquitinol-cytochrome C reductase, Fe-S subunit, TAT signal; Rieske [2Fe-2S] iron-sulphur domain
YP_005713728.1	PFAM: ABC transporter-like; KEGG: smd:Smed_1542 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_005713729.1	PFAM: ABC transporter-like; KEGG: smd:Smed_1543 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_005713730.1	PFAM: tRNA/rRNA methyltransferase, SpoU; KEGG: rhi:NGR_c16760 putative aminotransferase/methyltransferase
YP_005713731.1	PFAM: NADPH-dependent FMN reductase; KEGG: smd:Smed_1545 NADPH-dependent FMN reductase
YP_005713732.1	TIGRFAM: Redox-sensitive transcriptional activator SoxR; PFAM: Transcription regulator MerR, DNA binding; HTH transcriptional regulator, MerR; KEGG: smd:Smed_1546 MerR family transcriptional regulator; SMART: HTH transcriptional regulator, MerR
YP_005713733.1	PFAM: Major facilitator superfamily MFS-1; KEGG: smd:Smed_1547 major facilitator transporter
YP_005713734.1	KEGG: smd:Smed_1548 hypothetical protein
YP_005713735.1	HAMAP: Coproporphyrinogen III oxidase; KEGG: rhi:NGR_c16790 coproporphyrinogen III oxidase; PFAM: Coproporphyrinogen III oxidase
YP_005713736.1	PFAM: Transport-associated; KEGG: smd:Smed_1550 transport-associated
YP_005713737.1	manually curated; TIGRFAM: Addiction module antidote protein, HI1420; Addiction module killer protein, HI1419; KEGG: mno:Mnod_8269 addiction module killer protein; PFAM: Protein of unknown function DUF891
YP_005713738.1	PFAM: Protein of unknown function DUF330; KEGG: smd:Smed_1551 hypothetical protein
YP_005713739.1	PFAM: Mammalian cell entry-related; KEGG: smd:Smed_1552 hypothetical protein
YP_005713740.1	PFAM: ABC transporter-like; KEGG: smd:Smed_1553 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_005713741.1	PFAM: Domain of unknown function DUF140; KEGG: smd:Smed_1554 hypothetical protein
YP_005713742.1	KEGG: smd:Smed_1555 mandelate racemase/muconate lactonizing protein; PFAM: Mandelate racemase/muconate lactonizing enzyme, C-terminal; Mandelate racemase/muconate lactonizing enzyme, N-terminal; SMART: Mandelate racemase/muconate lactonizing enzyme, C-terminal
YP_005713743.1	PFAM: Major facilitator superfamily MFS-1; KEGG: smd:Smed_1556 major facilitator transporter
YP_005713744.1	PFAM: Metallo-dependent phosphatase; KEGG: smd:Smed_1557 metallophosphoesterase
YP_005713745.1	KEGG: smd:Smed_1558 malic enzyme; PFAM: Phosphate acetyl/butaryl transferase; Malic enzyme, NAD-binding; Malic enzyme, N-terminal; SMART: Malic enzyme, NAD-binding
YP_005713746.1	KEGG: smd:Smed_1559 regulatory protein LuxR; PFAM: Transcription regulator LuxR, C-terminal; Transcription factor LuxR-like, autoinducer-binding domain; SMART: Transcription regulator LuxR, C-terminal
YP_005713747.1	KEGG: smd:Smed_1560 autoinducer synthesis protein; PFAM: Autoinducer synthesis protein
YP_005713748.1	KEGG: smd:Smed_1561 putative signal peptide protein
YP_005713749.1	TIGRFAM: Cob(II)yrinic acid a,c-diamide reductase; KEGG: smd:Smed_1562 cob(II)yrinic acid a,c-diamide reductase; PFAM: Nitroreductase-like
YP_005713750.1	PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: smd:Smed_1563 short chain dehydrogenase; SMART: Polyketide synthase/Fatty acid synthase, KR
YP_005713751.1	PFAM: Phytanoyl-CoA dioxygenase; KEGG: rle:RL4238 hypothetical protein
YP_005713752.1	KEGG: rlg:Rleg_3771 transcriptional regulator, LacI family; PFAM: HTH transcriptional regulator, LacI; SMART: HTH transcriptional regulator, LacI
YP_005713753.1	KEGG: rhi:NGR_c16940 putative TolB-like protein
YP_005713754.1	KEGG: smd:Smed_1566 NAD synthetase; TIGRFAM: NAD synthase; PFAM: NAD/GMP synthase; Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
YP_005713755.1	PFAM: Sulfatase; KEGG: smd:Smed_1567 sulfatase
YP_005713756.1	PFAM: TadE-like; KEGG: atu:Atu1608 hypothetical protein
YP_005713757.1	PFAM: Protein of unknown function DUF2134, membrane; KEGG: atu:Atu1609 hypothetical protein
YP_005713758.1	KEGG: smd:Smed_1568 hypothetical protein
YP_005713759.1	PFAM: Glutathione-dependent formaldehyde-activating, GFA; KEGG: smd:Smed_1569 glutathione-dependent formaldehyde-activating GFA
YP_005713760.1	TIGRFAM: DAHP synthetase, class II; KEGG: smd:Smed_1570 phospho-2-dehydro-3-deoxyheptonate aldolase; PFAM: DAHP synthetase, class II
YP_005713761.1	TIGRFAM: Glutathione-disulphide reductase; KEGG: smd:Smed_1571 glutathione reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation
YP_005713762.1	PFAM: Protein of unknown function DUF2059; KEGG: smd:Smed_1572 hypothetical protein
YP_005713763.1	PFAM: Ribose 5-phosphate isomerase, type A; HTH transcriptional regulator, DeoR; TIGRFAM: Ribose 5-phosphate isomerase, type A; HAMAP: Ribose-5-phosphate isomerase, type A, subgroup; KEGG: smd:Smed_1573 ribose-5-phosphate isomerase A
YP_005713764.1	TIGRFAM: 2-phosphoglycolate phosphatase, prokaryotic; HAD-superfamily hydrolase, subfamily IA, variant 1; HAD-superfamily hydrolase, subfamily IA, variant 3; KEGG: smd:Smed_1574 phosphoglycolate phosphatase; PFAM: Haloacid dehalogenase-like hydrolase
YP_005713765.1	PFAM: YkuD domain; KEGG: smd:Smed_1575 hypothetical protein
YP_005713766.1	TIGRFAM: Fumarate hydratase, class II; KEGG: smd:Smed_1576 fumarate hydratase; PFAM: Lyase 1, N-terminal; Fumarase C, C-terminal
YP_005713767.1	PFAM: Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain; KEGG: smd:Smed_1577 pyridoxamine 5'-phosphate oxidase-related FMN-binding
YP_005713768.1	KEGG: smd:Smed_1578 hypothetical protein
YP_005713769.1	KEGG: smd:Smed_1579 MarR family transcriptional regulator; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR
YP_005713770.1	PFAM: Gamma-butyrobetaine dioxygenase/Trimethyllysine dioxygenase, N-terminal; KEGG: rhi:NGR_c17100 hypothetical protein
YP_005713771.1	TIGRFAM: Molybdenum cofactor biosynthesis protein A; PFAM: Molybdenum cofactor synthesis C-terminal; Radical SAM; KEGG: rhi:NGR_c17110 molybdenum cofactor biosynthesis protein A; SMART: Elongator protein 3/MiaB/NifB
YP_005713772.1	PFAM: Drug/metabolite transporter; KEGG: smd:Smed_1583 hypothetical protein
YP_005713773.1	KEGG: smd:Smed_1584 molybdopterin-guanine dinucleotide biosynthesis protein MobA; TIGRFAM: Molybdopterin-guanine dinucleotide biosynthesis protein A; HAMAP: Molybdopterin-guanine dinucleotide biosynthesis protein A
YP_005713774.1	TIGRFAM: Molybdopterin-guanine dinucleotide biosynthesis protein B (MobB), conserved domain; KEGG: smd:Smed_1585 molybdopterin-guanine dinucleotide biosynthesis protein B
YP_005713775.1	PFAM: Outer membrane protein, OmpA/MotB, C-terminal; KEGG: smd:Smed_1587 OmpA/MotB domain-containing protein
YP_005713776.1	KEGG: smd:Smed_1588 extracellular solute-binding protein; PFAM: Extracellular solute-binding protein, family 3; SMART: Extracellular solute-binding protein, family 3; Ionotropic glutamate receptor
YP_005713777.1	KEGG: smd:Smed_1589 polar amino acid ABC transporter, inner membrane subunit; TIGRFAM: Amino acid ABC transporter, permease protein, 3-TM domain, His/Glu/Gln/Arg/opine family; PFAM: Binding-protein-dependent transport systems inner membrane component
YP_005713778.1	KEGG: smd:Smed_1590 polar amino acid ABC transporter, inner membrane subunit; TIGRFAM: Amino acid ABC transporter, permease protein, 3-TM domain, His/Glu/Gln/Arg/opine family; PFAM: Binding-protein-dependent transport systems inner membrane component
YP_005713779.1	PFAM: Usg-like; KEGG: smd:Smed_1591 Usg family protein
YP_005713780.1	KEGG: smd:Smed_1592 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR
YP_005713781.1	PFAM: Uncharacterised conserved protein UCP01500; KEGG: smd:Smed_1593 hypothetical protein
YP_005713782.1	KEGG: smd:Smed_1594 methyltransferase type 12; PFAM: Methyltransferase type 12; Tetratricopeptide TPR-1; SMART: Tetratricopeptide repeat
YP_005713783.1	KEGG: smd:Smed_1595 6-phosphogluconate dehydrogenase NAD-binding; PFAM: 6-phosphogluconate dehydrogenase, NAD-binding
YP_005713784.1	KEGG: smd:Smed_1596 hypothetical protein
YP_005713785.1	KEGG: smd:Smed_1597 AsnC family transcriptional regulator; PFAM: Transcription regulator AsnC-type, C-terminal; SMART: Transcription regulator AsnC-type
YP_005713786.1	PFAM: Uracil-DNA glycosylase-like; KEGG: smd:Smed_1598 uracil-DNA glycosylase superfamily protein
YP_005713787.1	KEGG: rhi:NGR_c17290 putative exopolysaccharide biosynthesis protein; PFAM: Staphylococcal nuclease (SNase-like); SMART: Staphylococcal nuclease (SNase-like)
YP_005713788.1	KEGG: smd:Smed_1600 integral membrane sensor signal transduction histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain
YP_005713789.1	KEGG: rhi:NGR_c17320 diacylglycerol kinase; PFAM: Diacylglycerol kinase, prokaryotic
YP_005713790.1	PFAM: Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase-like; TIGRFAM: Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase, prokaryotic; HAMAP: Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase, prokaryotic; KEGG: smd:Smed_1603 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase
YP_005713791.1	KEGG: smd:Smed_1604 cobalamin synthase; HAMAP: Cobalamin (vitamin B12) biosynthesis CobS, cobalamin-5-phosphate synthase; PFAM: Cobalamin (vitamin B12) biosynthesis CobS, cobalamin-5-phosphate synthase
YP_005713792.1	PFAM: Protein of unknown function DUF1289; KEGG: smd:Smed_1605 hypothetical protein
YP_005713793.1	KEGG: smd:Smed_1606 putative transmembrane signal peptide protein
YP_005713794.1	PFAM: ABC-2 type transporter; KEGG: smd:Smed_1607 ABC-2 type transporter
YP_005713795.1	PFAM: ABC transporter-like; KEGG: smd:Smed_1608 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_005713796.1	KEGG: smd:Smed_1609 regulatory protein ArsR; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR
YP_005713797.1	PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: gpb:HDN1F_31380 GCN5-related N-acetyltransferase
YP_005713798.1	PFAM: Protein of unknown function DUF1778; KEGG: pmr:PMI1092 hypothetical protein
YP_005713799.1	PFAM: NADP oxidoreductase, coenzyme F420-dependent; KEGG: rru:Rru_A0460 NADP oxidoreductase, coenzyme F420-dependent
YP_005713800.1	PFAM: Extensin-like, C-terminal; KEGG: smd:Smed_1611 extensin family protein
YP_005713801.1	manually curated; PFAM: Protease inhibitor, Kazal-type; KEGG: smd:Smed_1612 protease inhibitor Kazal-type; SMART: Proteinase inhibitor I1, Kazal
YP_005713802.1	KEGG: smd:Smed_1613 methyl-accepting chemotaxis sensory transducer; PFAM: Chemotaxis methyl-accepting receptor, signalling; Cache, type 2; HAMP linker domain; SMART: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain
YP_005713803.1	PFAM: Thioesterase superfamily; KEGG: rhi:NGR_c17470 predicted acyl-CoA hydrolase protein
YP_005713804.1	KEGG: smd:Smed_1615 hypothetical protein
YP_005713805.1	PFAM: Protein of unknown function DUF486; KEGG: smd:Smed_1616 hypothetical protein
YP_005713806.1	SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal; TIGRFAM: Excinuclease ABC, B subunit; KEGG: smd:Smed_1617 excinuclease ABC subunit B; HAMAP: Excinuclease ABC, B subunit; PFAM: Helicase, C-terminal; Restriction endonuclease, type I, R subunit/Type III, Res subunit; UvrB/UvrC protein
YP_005713807.1	KEGG: smd:Smed_1618 glycine rich transmembrane protein
YP_005713808.1	KEGG: smd:Smed_1619 heat shock protein DnaJ domain-containing protein; PFAM: Heat shock protein DnaJ, N-terminal; SMART: Heat shock protein DnaJ, N-terminal
YP_005713809.1	KEGG: smd:Smed_1620 cold-shock DNA-binding domain-containing protein; PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein
YP_005713810.1	PFAM: tRNA-dihydrouridine synthase; KEGG: smd:Smed_1621 tRNA-dihydrouridine synthase A
YP_005713811.1	KEGG: smd:Smed_1622 phage integrase family protein; manually curated; PFAM: Integrase, catalytic core, phage
YP_005713812.1	PFAM: DNA methylase N-4/N-6; KEGG: rme:Rmet_2670 DNA methylase N-4/N-6
YP_005713813.1	KEGG: rme:Rmet_2669 hypothetical protein
YP_005713814.1	KEGG: rme:Rmet_2668 ATPase; PFAM: ATPase, AAA-5; SMART: ATPase, AAA+ type, core
YP_005713815.1	PFAM: 5-methylcytosine restriction system component; KEGG: rme:Rmet_2667 McrBC 5-methylcytosine restriction system component-like protein
YP_005713816.1	manually curated; TIGRFAM: DNA polymerase LigD, ligase domain; KEGG: smd:Smed_1305 DNA polymerase LigD ligase region; PFAM: DNA ligase, ATP-dependent, central; DNA ligase, ATP-dependent, C-terminal
YP_005713817.1	manually curated; KEGG: rec:RHECIAT_CH0001887 hypothetical protein
YP_005713818.1	PFAM: Protein of unknown function DUF3606; KEGG: smd:Smed_6347 hypothetical protein
YP_005713819.1	KEGG: smd:Smed_1865 hypothetical protein
YP_005713820.1	KEGG: smd:Smed_4778 hypothetical protein
YP_005713821.1	PFAM: Peptidoglycan binding-like; KEGG: smd:Smed_1867 chitinase-like protein
YP_005713823.1	KEGG: smd:Smed_6361 hypothetical protein
YP_005713824.1	KEGG: smd:Smed_5213 hypothetical protein
YP_005713825.1	KEGG: smd:Smed_1639 hypothetical protein
YP_005713826.1	KEGG: smd:Smed_1873 hypothetical protein
YP_005713827.1	PFAM: Domain of unknown function DUF1983; KEGG: smd:Smed_1641 hypothetical protein
YP_005713828.1	KEGG: smd:Smed_1642 hypothetical protein
YP_005713829.1	KEGG: smd:Smed_1644 hypothetical protein
YP_005713830.1	KEGG: smd:Smed_1645 hypothetical protein
YP_005713831.1	PFAM: Phage tail tape measure protein TP901, core region; KEGG: smd:Smed_1646 hypothetical protein
YP_005713833.1	PFAM: Protein of unknown function DUF2376, phage; KEGG: smd:Smed_1647 hypothetical protein
YP_005713834.1	KEGG: smd:Smed_1648 hypothetical protein
YP_005713835.1	KEGG: smd:Smed_1649 phage major tail protein, TP901-1
YP_005713836.1	KEGG: smd:Smed_1650 hypothetical protein
YP_005713837.1	KEGG: smd:Smed_1651 hypothetical protein
YP_005713838.1	KEGG: smd:Smed_1652 hypothetical protein
YP_005713839.1	KEGG: smd:Smed_1653 hypothetical protein
YP_005713840.1	PFAM: Phage major capsid protein E; KEGG: smd:Smed_1654 phage major capsid protein E
YP_005713841.1	KEGG: smd:Smed_1655 hypothetical protein
YP_005713842.1	KEGG: smd:Smed_1656 hypothetical protein
YP_005713843.1	PFAM: Peptidase S49; KEGG: smd:Smed_1657 peptidase S49
YP_005713844.1	KEGG: smd:Smed_1658 lambda family phage portal protein; TIGRFAM: Phage portal protein, lambda; PFAM: Phage portal protein, lambda
YP_005713845.1	PFAM: Head-to-tail joining protein W, gpW; KEGG: smd:Smed_1659 hypothetical protein
YP_005713846.1	PFAM: Phage terminase GpA; KEGG: smd:Smed_1660 phage terminase GpA
YP_005713847.1	KEGG: smd:Smed_1661 hypothetical protein
YP_005713848.1	KEGG: smd:Smed_1662 hypothetical protein
YP_005713849.1	PFAM: Transcription antitermination protein, NusG, N-terminal; KEGG: smd:Smed_1663 NusG antitermination factor
YP_005713850.1	KEGG: smd:Smed_1664 hypothetical protein
YP_005713851.1	KEGG: smd:Smed_1666 hypothetical protein
YP_005713852.1	PFAM: MT-A70; KEGG: smd:Smed_1667 MT-A70 family protein
YP_005713853.1	KEGG: smd:Smed_1668 hypothetical protein
YP_005713854.1	KEGG: smd:Smed_1669 hypothetical protein
YP_005713855.1	KEGG: smd:Smed_1670 hypothetical protein
YP_005713856.1	KEGG: smd:Smed_1671 hypothetical protein
YP_005713857.1	KEGG: smd:Smed_1672 hypothetical protein
YP_005713858.1	PFAM: Peptidase S24/S26A/S26B, conserved region; KEGG: smd:Smed_1673 putative phage repressor
YP_005713859.1	KEGG: smd:Smed_1674 hypothetical protein
YP_005713860.1	KEGG: smd:Smed_1675 hypothetical protein
YP_005713861.1	KEGG: smd:Smed_1676 hypothetical protein
YP_005713862.1	KEGG: smd:Smed_1676 hypothetical protein
YP_005713864.1	KEGG: smd:Smed_1677 hypothetical protein
YP_005713865.1	KEGG: smd:Smed_1678 hypothetical protein
YP_005713866.1	KEGG: smd:Smed_1679 hypothetical protein
YP_005713867.1	KEGG: smd:Smed_1680 hypothetical protein
YP_005713868.1	KEGG: smd:Smed_1681 alpha/beta hydrolase fold; PFAM: Alpha/beta hydrolase fold-1
YP_005713869.1	KEGG: smd:Smed_1683 sterile alpha motif-containing protein; PFAM: Adenylyl cyclase class-3/4/guanylyl cyclase; Sterile alpha motif, type 1; SMART: Adenylyl cyclase class-3/4/guanylyl cyclase; Cyclic nucleotide-binding domain; Sterile alpha motif domain
YP_005713871.1	KEGG: smd:Smed_1688 putative glycine-rich cell wall structural transmembrane protein
YP_005713872.1	KEGG: smd:Smed_1689 hypothetical protein
YP_005713873.1	PFAM: Protein of unknown function DUF982; KEGG: smd:Smed_1690 hypothetical protein
YP_005713874.1	KEGG: smd:Smed_1691 hypothetical protein
YP_005713875.1	PFAM: Fumarylacetoacetase, C-terminal-like; KEGG: smd:Smed_1692 fumarylacetoacetate (FAA) hydrolase
YP_005713876.1	KEGG: smd:Smed_1693 hexapaptide repeat-containing transferase
YP_005713877.1	PFAM: Ferric-uptake regulator; KEGG: rhi:NGR_c17620 zinc uptake transcriptional regulator protein, Fur family
YP_005713878.1	PFAM: ABC-3; KEGG: smd:Smed_1695 ABC-3 protein
YP_005713879.1	KEGG: rhi:NGR_c17640 ABC transporter, zinc containing nucleotide binding/ATPase protein; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core
YP_005713880.1	PFAM: ABC transporter metal-binding lipoprotein; KEGG: smd:Smed_1697 periplasmic solute binding protein
YP_005713881.1	KEGG: smd:Smed_1709 putative transmembrane signal peptide protein
YP_005713882.1	KEGG: smd:Smed_1710 alpha-N-arabinofuranosidase; PFAM: Glycoside hydrolase, family 43
YP_005713883.1	PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: smd:Smed_1711 tripartite ATP-independent periplasmic transporter DctQ
YP_005713884.1	KEGG: smd:Smed_1712 TRAP dicarboxylate transporter, DctM subunit; TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit
YP_005713885.1	PFAM: Integrase, catalytic core; KEGG: rpt:Rpal_4342 integrase catalytic region
YP_005713886.1	PFAM: Extracellular solute-binding protein, family 7, bacteria; KEGG: smd:Smed_1719 TRAP dicarboxylate transporter-DctP subunit
YP_005713887.1	PFAM: NADP-dependent oxidoreductase domain; KEGG: smd:Smed_1721 aldo/keto reductase
YP_005713888.1	PFAM: Oxidoreductase, N-terminal; KEGG: smd:Smed_1722 oxidoreductase domain-containing protein
YP_005713889.1	PFAM: Xylose isomerase, TIM barrel domain; KEGG: smd:Smed_1723 xylose isomerase domain-containing protein
YP_005713890.1	KEGG: smd:Smed_1724 beta-mannosidase; PFAM: Glycoside hydrolase, family 2, carbohydrate-binding
YP_005713891.1	PFAM: ABC transporter-like; Transport-associated OB, type 2; KEGG: smd:Smed_1725 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_005713892.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_1726 binding-protein-dependent transport systems inner membrane component
YP_005713893.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_1727 binding-protein-dependent transport systems inner membrane component
YP_005713894.1	PFAM: Bacterial extracellular solute-binding, family 1; KEGG: smd:Smed_1728 extracellular solute-binding protein
YP_005713895.1	KEGG: smd:Smed_1730 periplasmic binding protein/LacI transcriptional regulator; PFAM: Periplasmic binding protein/LacI transcriptional regulator; HTH transcriptional regulator, LacI; SMART: HTH transcriptional regulator, LacI
YP_005713896.1	KEGG: smd:Smed_1731 hypothetical protein
YP_005713897.1	TIGRFAM: 6-phosphogluconate dehydrogenase, decarboxylating; KEGG: smd:Smed_1732 6-phosphogluconate dehydrogenase; PFAM: 6-phosphogluconate dehydrogenase, C-terminal; 6-phosphogluconate dehydrogenase, NAD-binding
YP_005713898.1	KEGG: smd:Smed_6060 amino acid carrier protein; TIGRFAM: Sodium:alanine symporter; PFAM: Sodium:alanine symporter
YP_005713899.1	SMART: Helix-turn-helix, AraC type, DNA binding domain; KEGG: smd:Smed_1733 helix-turn-helix domain-containing protein
YP_005713900.1	KEGG: smd:Smed_1734 hypothetical protein
YP_005713901.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: smd:Smed_1735 glyoxalase/bleomycin resistance protein/dioxygenase
YP_005713902.1	PFAM: Bacterial lipid A biosynthesis acyltransferase; KEGG: smd:Smed_1736 lipid A biosynthesis lauroyl acyltransferase
YP_005713903.1	PFAM: Alcohol dehydrogenase, C-terminal; Alcohol dehydrogenase GroES-like; KEGG: smd:Smed_1737 alcohol dehydrogenase; SMART: Polyketide synthase, enoylreductase
YP_005713904.1	PFAM: Beta-ketoacyl synthase, C-terminal; Beta-ketoacyl synthase, N-terminal; KEGG: smd:Smed_1738 3-oxoacyl-(acyl carrier protein) synthase II; SMART: Polyketide synthase, beta-ketoacyl synthase domain
YP_005713905.1	PFAM: Beta-ketoacyl synthase, N-terminal; KEGG: smd:Smed_1739 3-oxoacyl-(acyl carrier protein) synthase II
YP_005713906.1	PFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ; KEGG: smd:Smed_1740 beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ
YP_005713907.1	PFAM: Phosphopantetheine-binding; KEGG: smd:Smed_1741 acyl carrier protein
YP_005713908.1	TIGRFAM: Cobalamin biosynthesis CobD/CbiB; HAMAP: Cobalamin biosynthesis CobD/CbiB; KEGG: smd:Smed_1743 cobalamin biosynthesis protein; PFAM: Cobalamin biosynthesis CobD/CbiB
YP_005713909.1	KEGG: smd:Smed_1744 aminotransferase class I and II; TIGRFAM: L-threonine-O-3-phosphate decarboxylase; PFAM: Aminotransferase, class I/classII
YP_005713910.1	TIGRFAM: Cobyrinic acid a,c-diamide synthase CbiA; HAMAP: Cobyrinic acid a,c-diamide synthase CbiA; KEGG: smd:Smed_1745 cobyrinic acid a,c-diamide synthase; PFAM: Cobyrinic acid a,c-diamide synthase; CobB/CobQ-like glutamine amidotransferase
YP_005713911.1	TIGRFAM: Uroporphyrin-III C-methyltransferase, C-terminal; KEGG: smd:Smed_1746 uroporphyrin-III C-methyltransferase; PFAM: Tetrapyrrole methylase
YP_005713912.1	PFAM: Cobalamin (vitamin B12) biosynthesis CbiG, core; KEGG: smd:Smed_1747 putative cobalamin biosynthesis protein
YP_005713913.1	PFAM: Protein of unknown function DUF81; KEGG: smd:Smed_1748 hypothetical protein
YP_005713914.1	KEGG: smd:Smed_1749 ABC transporter related; PFAM: ABC transporter-like; Oligopeptide/dipeptide ABC transporter, C-terminal; SMART: ATPase, AAA+ type, core
YP_005713915.1	PFAM: Acetamidase/Formamidase; KEGG: smd:Smed_1750 acetamidase/formamidase
YP_005713916.1	PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: smd:Smed_1751 extracellular solute-binding protein
YP_005713917.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_1752 binding-protein-dependent transport systems inner membrane component
YP_005713918.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_1753 binding-protein-dependent transport systems inner membrane component
YP_005713919.1	PFAM: ANTAR; KEGG: smd:Smed_1754 response regulator receiver/ANTAR domain-containing protein
YP_005713920.1	KEGG: smd:Smed_1755 putative regulator protein
YP_005713922.1	TIGRFAM: Adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR; KEGG: smd:Smed_1758 cob(I)yrinic acid a,c-diamide adenosyltransferase; PFAM: Adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR
YP_005713923.1	TIGRFAM: Cobaltochelatase, CobN subunit; KEGG: smd:Smed_1759 cobaltochelatase subunit CobN; PFAM: CobN/magnesium chelatase
YP_005713924.1	TIGRFAM: Cobalamin (vitamin B12) biosynthesis CobW; PFAM: Cobalamin (vitamin B12) biosynthesis CobW-like; Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal; KEGG: smd:Smed_1760 cobalamin biosynthesis protein CobW; SMART: Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal
YP_005713925.1	KEGG: smd:Smed_1761 adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; PFAM: Cobinamide kinase/cobinamide phosphate guanyltransferase
YP_005713926.1	PFAM: FecR protein; KEGG: smd:Smed_1762 hypothetical protein
YP_005713927.1	KEGG: smd:Smed_1763 putative CHASE2 sensor protein; PFAM: CHASE2; Adenylyl cyclase class-3/4/guanylyl cyclase; SMART: Adenylyl cyclase class-3/4/guanylyl cyclase
YP_005713928.1	PFAM: Alpha/beta hydrolase fold-1; KEGG: smd:Smed_1764 alpha/beta hydrolase fold
YP_005713929.1	TIGRFAM: Cobyric acid synthase CobQ; HAMAP: Cobyric acid synthase CobQ; KEGG: smd:Smed_1765 cobyric acid synthase; PFAM: CobB/CobQ-like glutamine amidotransferase; Cobyrinic acid a,c-diamide synthase
YP_005713930.1	KEGG: smd:Smed_1766 hypothetical protein
YP_005713931.1	PFAM: ABC-type glycine betaine transport system, substrate-binding domain; KEGG: smd:Smed_1767 substrate-binding region of ABC-type glycine betaine transport system
YP_005713932.1	SMART: ATPase, AAA+ type, core; TIGRFAM: Glycine betaine/L-proline transport ATP-binding subunit; KEGG: smd:Smed_1768 glycine betaine/L-proline ABC transporter, ATPase subunit; PFAM: ABC transporter-like
YP_005713933.1	KEGG: rce:RC1_0082 transcriptional regulators (CopG/Arc/MetJ DNA-binding domain), putative; TIGRFAM: Putative addiction module antidote protein, CC2985; PFAM: Uncharacterised protein family UPF0156/MetJ /Arc repressor
YP_005713934.1	PFAM: 4-oxalocrotonate tautomerase; KEGG: smd:Smed_1769 4-oxalocrotonate tautomerase
YP_005713935.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: smd:Smed_1770 LysR family transcriptional regulator
YP_005713936.1	KEGG: smd:Smed_1771 methionine synthase I; PFAM: Homocysteine S-methyltransferase
YP_005713937.1	KEGG: dat:HRM2_38890 AspC4; PFAM: Aminotransferase, class I/classII
YP_005713938.1	PFAM: YheO-like; KEGG: nml:Namu_0520 YheO domain-containing protein
YP_005713939.1	PFAM: Phosphodiester alpha-GlcNAcase; KEGG: smd:Smed_1773 lipoprotein signal peptide
YP_005713940.1	KEGG: smd:Smed_1774 hypothetical protein
YP_005713941.1	PFAM: Trimethylamine methyltransferase; KEGG: smd:Smed_1775 trimethylamine methyltransferase
YP_005713942.1	KEGG: smd:Smed_1776 methionine synthase; PFAM: Cobalamin (vitamin B12)-binding; Methionine synthase, cobalamin (vitamin B12)-binding module, cap
YP_005713943.1	KEGG: rhi:NGR_c18390 hypothetical protein; manually curated; PFAM: Entericidin EcnAB
YP_005713944.1	KEGG: smd:Smed_1777 hypothetical protein
YP_005713945.1	PFAM: Formyl transferase, N-terminal; KEGG: rhi:NGR_c18410 formyl transferase domain protein
YP_005713946.1	PFAM: Entericidin EcnAB; KEGG: smd:Smed_1778 entericidin EcnAB
YP_005713947.1	KEGG: smd:Smed_1779 lipoprotein transmembrane
YP_005713948.1	PFAM: BA14K-like; KEGG: smd:Smed_1780 BA14K family protein
YP_005713949.1	KEGG: rhi:NGR_c18440 hypothetical protein
YP_005713950.1	KEGG: smd:Smed_1782 hypothetical protein
YP_005713951.1	PFAM: Methylenetetrahydrofolate reductase; KEGG: smd:Smed_1783 methylenetetrahydrofolate reductase
YP_005713952.1	KEGG: smd:Smed_1784 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; PFAM: Pterin-binding
YP_005713953.1	KEGG: smd:Smed_1785 hypothetical protein
YP_005713954.1	PFAM: Ferredoxin; KEGG: smd:Smed_1786 ferredoxin
YP_005713955.1	PFAM: Chloramphenicol phosphotransferase-like; KEGG: smd:Smed_1787 chloramphenicol phosphotransferase family protein
YP_005713956.1	PFAM: Activator of Hsp90 ATPase homologue 1-like; KEGG: rhi:NGR_c18550 hypothetical protein
YP_005713957.1	KEGG: rpx:Rpdx1_0881 regulatory protein ArsR; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR
YP_005713958.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: smd:Smed_1788 LysR family transcriptional regulator
YP_005713959.1	KEGG: rhi:NGR_c18570 hypothetical protein
YP_005713960.1	KEGG: smd:Smed_1789 hypothetical protein
YP_005713961.1	PFAM: Alpha/beta hydrolase fold-1; KEGG: smd:Smed_1790 alpha/beta hydrolase fold
YP_005713962.1	KEGG: smd:Smed_1791 hypothetical protein
YP_005713963.1	KEGG: smd:Smed_1792 cation diffusion facilitator family transporter; TIGRFAM: Cation efflux protein; PFAM: Cation efflux protein
YP_005713964.1	KEGG: smd:Smed_1793 hypothetical protein; manually curated; PFAM: Protein of unknown function DUF156
YP_005713965.1	KEGG: smd:Smed_1794 AraC family transcriptional regulator; PFAM: HTH transcriptional regulator, AraC; ThiJ/PfpI; SMART: Helix-turn-helix, AraC type, DNA binding domain
YP_005713966.1	KEGG: rhi:NGR_c18610 putative two component response regulator transcriptional regulatory protein; PFAM: Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain
YP_005713967.1	PFAM: Haemolysin-type calcium-binding repeat; KEGG: smd:Smed_1796 hemolysin-type calcium-binding region
YP_005713968.1	KEGG: rhi:NGR_c18620 putative guanylate/adenylate cyclase; PFAM: Adenylyl cyclase class-3/4/guanylyl cyclase; SMART: Adenylyl cyclase class-3/4/guanylyl cyclase
YP_005713969.1	PFAM: Bacterial bifunctional deaminase-reductase, C-terminal; KEGG: smd:Smed_1797 deaminase-reductase domain-containing protein
YP_005713970.1	KEGG: rhi:NGR_c18660 hypothetical protein
YP_005713971.1	KEGG: smd:Smed_1799 integral membrane protein TerC; TIGRFAM: Integral membrane protein YjbE; PFAM: Integral membrane protein TerC
YP_005713972.1	PFAM: Mechanosensitive ion channel MscS; KEGG: smd:Smed_1800 MscS mechanosensitive ion channel
YP_005713973.1	PFAM: Glutathione-dependent formaldehyde-activating, GFA; KEGG: smd:Smed_1801 glutathione-dependent formaldehyde-activating GFA
YP_005713974.1	PFAM: Protein of unknown function DUF924; KEGG: smd:Smed_1802 hypothetical protein
YP_005713975.1	PFAM: Regulator of K+ conductance, C-terminal; Divalent ion symporter; KEGG: smd:Smed_1803 TrkA domain-containing protein
YP_005713976.1	KEGG: smd:Smed_1804 putative transmembrane protein
YP_005713977.1	KEGG: smd:Smed_1805 putative transmembrane protein
YP_005713978.1	PFAM: Protein of unknown function DUF1515; KEGG: smd:Smed_1806 hypothetical protein
YP_005713979.1	KEGG: smd:Smed_1807 hypothetical protein
YP_005713980.1	KEGG: smd:Smed_1808 putative transmembrane protein
YP_005713981.1	PFAM: Glycosyl transferase, family 2; KEGG: rhi:NGR_c18850 hypothetical protein
YP_005713982.1	KEGG: rhi:NGR_c18860 hypothetical protein
YP_005713983.1	KEGG: smd:Smed_1839 hypothetical protein
YP_005713984.1	PFAM: Glutathione-dependent formaldehyde-activating, GFA; KEGG: smd:Smed_1840 glutathione-dependent formaldehyde-activating GFA
YP_005713985.1	KEGG: smd:Smed_1841 hypothetical protein
YP_005713986.1	KEGG: smd:Smed_1842 putative signal peptide protein
YP_005713987.1	PFAM: Transposase, IS4-like; KEGG: ret:RHE_PD00041 insertion sequence transposase protein
YP_005713988.1	KEGG: smd:Smed_1843 hypothetical protein
YP_005713989.1	KEGG: smd:Smed_1844 hypothetical protein
YP_005713990.1	KEGG: rhi:NGR_c19100 hypothetical protein
YP_005713991.1	KEGG: smd:Smed_1849 putative transmembrane protein
YP_005713992.1	KEGG: rhi:NGR_c19120 hypothetical protein
YP_005713993.1	KEGG: smd:Smed_1851 BA14K family protein; manually curated; PFAM: BA14K-like
YP_005713994.1	KEGG: smd:Smed_1852 hypothetical protein
YP_005713995.1	KEGG: smd:Smed_1853 chromosomal replication initiator DnaA domain-containing protein; PFAM: Chromosomal replication initiator, DnaA C-terminal; SMART: Chromosomal replication initiator, DnaA C-terminal
YP_005713996.1	PFAM: Peptidase S24/S26A/S26B, conserved region; KEGG: smd:Smed_1854 putative phage repressor
YP_005713997.1	KEGG: smd:Smed_1855 hypothetical protein
YP_005713998.1	KEGG: smd:Smed_1856 putative signal peptide protein
YP_005713999.1	PFAM: Pentapeptide repeat; KEGG: smd:Smed_1857 pentapeptide repeat-containing protein
YP_005714000.1	KEGG: smd:Smed_1858 import inner membrane translocase subunit Tim44; PFAM: Membrane transporter, Tim44-related/Ribosomal protein L45; SMART: Membrane transporter, Tim44-related/Ribosomal protein L45
YP_005714001.1	KEGG: pfl:PFL_3610 RNA polymerase sigma-70 family protein; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2
YP_005714002.1	PFAM: FecR protein; KEGG: atu:Atu3386 two component sensor kinase
YP_005714003.1	TIGRFAM: TonB-dependent haem/haemoglobin receptor; TonB-dependent haemoglobin/transferrin/lactoferrin receptor; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; Secretin/TonB, short N-terminal; KEGG: atu:Atu3385 heme receptor; SMART: Secretin/TonB, short N-terminal
YP_005714004.1	KEGG: bsb:Bresu_2411 hypothetical protein
YP_005714005.1	SMART: ATPase, AAA+ type, core; TIGRFAM: ATPase, type I secretion system, PrtD; KEGG: atu:Atu3383 rhizobicin secretion; PFAM: ABC transporter-like; ABC transporter, transmembrane domain
YP_005714006.1	KEGG: atu:Atu3382 HlyD family secretion protein; TIGRFAM: Type I secretion membrane fusion protein, HlyD; PFAM: Secretion protein HlyD
YP_005714007.1	KEGG: smd:Smed_1859 hypothetical protein
YP_005714008.1	KEGG: rhi:NGR_c19240 hypothetical protein
YP_005714009.1	KEGG: mlo:msr2149 hypothetical protein; manually curated; PFAM: Uncharacterised protein family UPF0395
YP_005714010.1	PFAM: Uncharacterised protein family UPF0150; CopG-like DNA-binding; KEGG: mlo:mlr2150 hypothetical protein
YP_005714011.1	KEGG: smd:Smed_1932 PhzF family phenazine biosynthesis protein; TIGRFAM: Phenazine biosynthesis PhzC/PhzF protein; PFAM: Phenazine biosynthesis PhzC/PhzF protein
YP_005714012.1	PFAM: NUDIX hydrolase domain; KEGG: smd:Smed_1933 NUDIX hydrolase
YP_005714013.1	PFAM: Endonuclease/exonuclease/phosphatase; KEGG: smd:Smed_1934 endonuclease/exonuclease/phosphatase
YP_005714014.1	TIGRFAM: Conserved hypothetical protein CHP02594; KEGG: smd:Smed_1935 putative signal peptide protein
YP_005714015.1	KEGG: rhi:NGR_b02140 hypothetical protein
YP_005714016.1	PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: smd:Smed_1939 TRAP C4-dicarboxylate transport system permease DctM subunit
YP_005714017.1	PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: smd:Smed_1940 tripartite ATP-independent periplasmic transporter DctQ
YP_005714018.1	PFAM: Extracellular solute-binding protein, family 7, bacteria; KEGG: smd:Smed_1941 TRAP dicarboxylate transporter-DctP subunit
YP_005714019.1	PFAM: NHL repeat; KEGG: rhi:NGR_c19450 L-sorbosone dehydrogenase
YP_005714020.1	KEGG: smd:Smed_1942 TPR repeat-containing protein
YP_005714021.1	TIGRFAM: Cell division protein FtsZ, N-terminal; PFAM: Tubulin/FtsZ, GTPase domain; Tubulin/FtsZ, 2-layer sandwich domain; KEGG: smd:Smed_1943 cell division protein FtsZ; SMART: Tubulin/FtsZ, GTPase domain; Tubulin/FtsZ, 2-layer sandwich domain
YP_005714022.1	KEGG: smd:Smed_1944 hypothetical protein
YP_005714023.1	TIGRFAM: HAD-superfamily hydrolase, subfamily IIB; PFAM: HAD superfamily hydrolase-like, type 3; KEGG: rhi:NGR_c19510 putative phosphoglycolate phosphatase; SMART: ATPase, AAA+ type, core
YP_005714024.1	PFAM: ABC transporter-like; KEGG: smd:Smed_1946 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_005714025.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_1947 binding-protein-dependent transport systems inner membrane component
YP_005714026.1	PFAM: Bacterial extracellular solute-binding, family 1; KEGG: smd:Smed_1948 extracellular solute-binding protein
YP_005714027.1	KEGG: smd:Smed_1949 cold-shock DNA-binding domain-containing protein; PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein
YP_005714028.1	KEGG: smd:Smed_1950 hypothetical protein
YP_005714029.1	TIGRFAM: Ribosomal protein S21; HAMAP: Ribosomal protein S21; KEGG: smd:Smed_1951 30S ribosomal protein S21; PFAM: Ribosomal protein S21
YP_005714030.1	PFAM: Glutathione S-transferase, C-terminal; Glutathione S-transferase, N-terminal; KEGG: smd:Smed_1953 glutathione S-transferase domain-containing protein
YP_005714031.1	KEGG: smd:Smed_1954 aldo/keto reductase; PFAM: NADP-dependent oxidoreductase domain
YP_005714032.1	PFAM: Transposase, IS4-like; KEGG: ret:RHE_PD00041 insertion sequence transposase protein
YP_005714033.1	PFAM: Aminotransferase, class I/classII; KEGG: smd:Smed_1955 GntR family transcriptional regulator
YP_005714035.1	manually curated; KEGG: smd:Smed_1957 hypothetical protein
YP_005714036.1	PFAM: YkuD domain; KEGG: smd:Smed_1958 ErfK/YbiS/YcfS/YnhG family protein
YP_005714037.1	PFAM: ABC-type glycine betaine transport system, substrate-binding domain; KEGG: smd:Smed_1959 substrate-binding region of ABC-type glycine betaine transport system
YP_005714038.1	KEGG: smd:Smed_1960 putative adenylate/guanylate cyclase
YP_005714039.1	KEGG: smd:Smed_1961 putative signal peptide protein
YP_005714040.1	PFAM: Acetohydroxy acid isomeroreductase, catalytic; Acetohydroxy acid isomeroreductase C-terminal; TIGRFAM: Acetohydroxy acid isomeroreductase; HAMAP: Acetohydroxy acid isomeroreductase; KEGG: smd:Smed_1962 ketol-acid reductoisomerase
YP_005714041.1	PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: smd:Smed_1963 TetR family transcriptional regulator
YP_005714042.1	KEGG: rhi:NGR_c19780 macrolide-specific efflux protein MacA precursor; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD
YP_005714043.1	PFAM: Domain of unknown function DUF214, ABC transporter permease; ABC transporter-like; KEGG: rhi:NGR_c19790 macrolide export ATP-binding/permease protein MacB; SMART: ATPase, AAA+ type, core
YP_005714044.1	PFAM: Transglutaminase-like cysteine peptidase, predicted; KEGG: smd:Smed_1964 transglutaminase family protein cysteine peptidase BTLCP
YP_005714045.1	KEGG: smd:Smed_1965 putative glycine-rich protein
YP_005714046.1	KEGG: smd:Smed_1966 putative transmembrane protein
YP_005714047.1	PFAM: Aminoglycoside phosphotransferase; KEGG: smd:Smed_1967 aminoglycoside phosphotransferase
YP_005714048.1	PFAM: Asp/Glu/hydantoin racemase; KEGG: oan:Oant_1409 Asp/Glu racemase
YP_005714049.1	PFAM: Major facilitator superfamily MFS-1; KEGG: oan:Oant_1408 major facilitator transporter
YP_005714051.1	PFAM: Sugar isomerase (SIS); Helix-turn-helix protein RpiR; KEGG: ara:Arad_7133 hypothetical protein
YP_005714052.1	KEGG: smd:Smed_1968 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase
YP_005714053.1	KEGG: smd:Smed_1969 AsnC family transcriptional regulator; PFAM: Transcription regulator AsnC-type, C-terminal; SMART: Transcription regulator AsnC-type
YP_005714054.1	KEGG: smd:Smed_1970 aspartate racemase; TIGRFAM: Aspartate racemase; PFAM: Asp/Glu/hydantoin racemase
YP_005714055.1	PFAM: Helix-turn-helix, HxlR type; KEGG: rhi:NGR_c19870 putative transcriptional regulator protein
YP_005714056.1	KEGG: smd:Smed_1972 NmrA family protein
YP_005714057.1	PFAM: Protein of unknown function DUF983; KEGG: smd:Smed_1973 hypothetical protein
YP_005714058.1	KEGG: smd:Smed_1974 GntR family transcriptional regulator; PFAM: HTH transcriptional regulator, GntR; Aminotransferase, class I/classII; SMART: HTH transcriptional regulator, GntR
YP_005714059.1	TIGRFAM: Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ; KEGG: smd:Smed_1982 pyridoxine 5'-phosphate synthase; PFAM: Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ
YP_005714060.1	PFAM: Protein of unknown function DUF899, thioredoxin-like; KEGG: smd:Smed_1983 protein of unknown function DUF899 thioredoxin family protein
YP_005714061.1	KEGG: smd:Smed_1984 hypothetical protein
YP_005714062.1	PFAM: Rickettsia 17kDa surface antigen; KEGG: smd:Smed_1985 17 kDa surface antigen
YP_005714063.1	KEGG: smd:Smed_1986 putative signal peptide protein
YP_005714064.1	KEGG: smd:Smed_1987 hypothetical protein
YP_005714065.1	KEGG: smd:Smed_1988 hypothetical protein
YP_005714066.1	PFAM: TfuA-like, core; KEGG: smd:Smed_1989 TfuA domain-containing protein
YP_005714067.1	KEGG: smd:Smed_1990 hypothetical protein; TIGRFAM: YcaO-like; PFAM: YcaO-like
YP_005714068.1	KEGG: smd:Smed_1991 adenylyl cyclase class-3/4/guanylyl cyclase; PFAM: Adenylyl cyclase class-3/4/guanylyl cyclase; ATPase domain, prokaryote; SMART: Adenylyl cyclase class-3/4/guanylyl cyclase
YP_005714069.1	PFAM: Patatin/Phospholipase A2-related; KEGG: smd:Smed_1993 putative suppressor
YP_005714070.1	KEGG: smd:Smed_1994 exodeoxyribonuclease V
YP_005714071.1	KEGG: smd:Smed_1995 putative ammonia monooxygenase; TIGRFAM: AbrB duplication, membrane protein; PFAM: Putative ammonia monooxygenase
YP_005714072.1	KEGG: pla:Plav_2046 hypothetical protein
YP_005714073.1	KEGG: gme:Gmet_2969 hypothetical protein
YP_005714074.1	KEGG: rhi:NGR_c20070 conserved hypothetical secreted protein
YP_005714075.1	KEGG: smd:Smed_1997 ECF subfamily RNA polymerase sigma-24 factor; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2
YP_005714076.1	KEGG: smd:Smed_1998 putative transmembrane anti-sigma factor
YP_005714077.1	KEGG: rhi:NGR_c20100 hypothetical protein
YP_005714078.1	KEGG: rhi:NGR_c20110 putative low-molecular weight cobalt-containing nitrile hydratase subunit beta
YP_005714079.1	TIGRFAM: Nitrile hydratase, alpha subunit; KEGG: smd:Smed_2001 nitrile hydratase, alpha subunit; PFAM: Nitrile hydratase, alpha subunit/Thiocyanate hydrolase, gamma subunit
YP_005714080.1	PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: smd:Smed_2002 lysine exporter protein LysE/YggA
YP_005714081.1	PFAM: Methyltransferase type 11; KEGG: smd:Smed_2003 methyltransferase type 11
YP_005714082.1	KEGG: smd:Smed_2004 hypothetical protein
YP_005714083.1	KEGG: smd:Smed_2005 cold-shock DNA-binding domain-containing protein; PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein
YP_005714084.1	KEGG: smd:Smed_2006 aldo/keto reductase; PFAM: NADP-dependent oxidoreductase domain
YP_005714085.1	KEGG: smd:Smed_2007 acetolactate synthase 3 regulatory subunit; TIGRFAM: Acetolactate synthase, small subunit; PFAM: Acetolactate synthase, small subunit, C-terminal; Amino acid-binding ACT
YP_005714086.1	TIGRFAM: Acetolactate synthase, large subunit, biosynthetic; KEGG: smd:Smed_2008 acetolactate synthase 3 catalytic subunit; PFAM: Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain; Thiamine pyrophosphate enzyme, central domain; Thiamine pyrophosphate enzyme, C-terminal TPP-binding
YP_005714087.1	PFAM: Domain of unknown function DUF87; HerA-ATP synthase, barrel domain; KEGG: smd:Smed_2009 hypothetical protein
YP_005714088.1	KEGG: smd:Smed_2010 hypothetical protein
YP_005714089.1	KEGG: rhi:NGR_c20200 hypothetical protein
YP_005714090.1	PFAM: tRNA isopentenyltransferase; Isopentenyl transferase; TIGRFAM: tRNA delta(2)-isopentenylpyrophosphate transferase; KEGG: smd:Smed_2011 tRNA delta(2)-isopentenylpyrophosphate transferase; HAMAP: tRNA delta(2)-isopentenylpyrophosphate transferase
YP_005714091.1	TIGRFAM: Phosphoserine phosphatase SerB; HAD-superfamily hydrolase, subfamily IB, PSPase-like; KEGG: smd:Smed_2012 phosphoserine phosphatase SerB; PFAM: Haloacid dehalogenase-like hydrolase
YP_005714092.1	PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: smd:Smed_2013 GCN5-related N-acetyltransferase
YP_005714093.1	TIGRFAM: Peptidase S1C, Do; PFAM: Peptidase S1/S6, chymotrypsin/Hap; PDZ/DHR/GLGF; KEGG: smd:Smed_2014 protease Do; SMART: PDZ/DHR/GLGF
YP_005714094.1	KEGG: smd:Smed_2015 amino acid-binding ACT domain-containing protein
YP_005714095.1	PFAM: Protein of unknown function DUF2065; KEGG: smd:Smed_2016 hypothetical protein
YP_005714096.1	TIGRFAM: HflC; PFAM: Band 7 protein; KEGG: smd:Smed_2017 HflC protein; SMART: Band 7 protein
YP_005714097.1	TIGRFAM: HflK; PFAM: Band 7 protein; KEGG: smd:Smed_2018 HflK protein; SMART: Band 7 protein
YP_005714098.1	KEGG: smd:Smed_2019 dihydrofolate reductase; PFAM: Dihydrofolate reductase domain
YP_005714099.1	PFAM: Glutathione S-transferase, N-terminal; KEGG: smd:Smed_2020 glutathione S-transferase domain-containing protein
YP_005714100.1	PFAM: Thymidylate synthase; TIGRFAM: Thymidylate synthase; HAMAP: Thymidylate synthase; KEGG: smd:Smed_2021 thymidylate synthase
YP_005714101.1	KEGG: smd:Smed_2022 hypothetical protein
YP_005714102.1	KEGG: smd:Smed_2023 hypothetical protein
YP_005714103.1	KEGG: smd:Smed_2024 hypothetical protein
YP_005714104.1	KEGG: smd:Smed_2026 hypothetical protein
YP_005714105.1	KEGG: smd:Smed_2027 hypothetical protein
YP_005714106.1	KEGG: smd:Smed_2028 hypothetical protein
YP_005714107.1	KEGG: smd:Smed_2029 hypothetical protein
YP_005714108.1	PFAM: Transposase, IS4-like; KEGG: rhi:NGR_b15530 putative transposase Y4zB-like protein
YP_005714109.1	KEGG: smd:Smed_2030 hypothetical protein
YP_005714110.1	KEGG: smd:Smed_2031 D-lactate dehydrogenase (cytochrome); PFAM: FAD-linked oxidase, C-terminal; FAD linked oxidase, N-terminal
YP_005714111.1	PFAM: Protein of unknown function DUF1772; KEGG: smd:Smed_2032 hypothetical protein
YP_005714112.1	PFAM: Acriflavin resistance protein; KEGG: smd:Smed_2033 acriflavin resistance protein
YP_005714113.1	KEGG: smd:Smed_2034 RND family efflux transporter MFP subunit; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD
YP_005714114.1	PFAM: Putative cyclase; KEGG: smd:Smed_2035 cyclase family protein
YP_005714115.1	KEGG: smd:Smed_2036 alkylhydroperoxidase; TIGRFAM: Alkylhydroperoxidase AhpD core; PFAM: Carboxymuconolactone decarboxylase
YP_005714116.1	PFAM: DNA helicase, UvrD/REP type; KEGG: rhi:NGR_c20770 DNA helicase II
YP_005714117.1	PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: smd:Smed_2044 GCN5-related N-acetyltransferase
YP_005714118.1	PFAM: Phosphoribosyltransferase; KEGG: smd:Smed_2045 phosphoribosyltransferase
YP_005714119.1	TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate cyclase, predicted; KEGG: smd:Smed_2046 diguanylate cyclase; SMART: Diguanylate cyclase, predicted
YP_005714120.1	PFAM: Uncharacterised protein family CreA; KEGG: smd:Smed_2047 CreA family protein
YP_005714121.1	KEGG: smd:Smed_2048 putative signal peptide protein
YP_005714122.1	KEGG: smd:Smed_2049 putative signal peptide protein
YP_005714123.1	KEGG: smd:Smed_2050 putative CheW protein; PFAM: CheW-like protein; SMART: CheW-like protein
YP_005714124.1	KEGG: smd:Smed_2051 methyl-accepting chemotaxis sensory transducer; PFAM: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain; SMART: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain
YP_005714125.1	KEGG: smd:Smed_2052 putative signal peptide protein
YP_005714126.1	PFAM: Copper chaperone SCO1/SenC; KEGG: smd:Smed_2053 electron transport protein SCO1/SenC
YP_005714127.1	KEGG: smd:Smed_2054 ribosomal protein L11 methyltransferase; HAMAP: Ribosomal protein L11 methyltransferase; PFAM: Ribosomal L11 methyltransferase, PrmA
YP_005714128.1	KEGG: rlt:Rleg2_4631 hypothetical protein
YP_005714129.1	PFAM: Peptidase M24, structural domain; Creatinase; KEGG: smd:Smed_2055 peptidase M24
YP_005714130.1	KEGG: smd:Smed_2056 putative signal peptide protein
YP_005714131.1	PFAM: Branched-chain amino acid transport, AzlD; KEGG: smd:Smed_2057 branched-chain amino acid transport
YP_005714132.1	PFAM: Branched-chain amino acid transport, permease; KEGG: smd:Smed_2058 AzlC family protein
YP_005714133.1	PFAM: Ketopantoate hydroxymethyltransferase; TIGRFAM: Ketopantoate hydroxymethyltransferase; HAMAP: Ketopantoate hydroxymethyltransferase; KEGG: smd:Smed_2059 3-methyl-2-oxobutanoate hydroxymethyltransferase
YP_005714134.1	TIGRFAM: Pantoate-beta-alanine ligase; HAMAP: Pantoate-beta-alanine ligase; KEGG: smd:Smed_2060 pantoate--beta-alanine ligase; PFAM: Pantoate-beta-alanine ligase
YP_005714135.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: smd:Smed_2061 glyoxalase/bleomycin resistance protein/dioxygenase
YP_005714136.1	SMART: NAD-dependent DNA ligase, N-terminal; Helix-hairpin-helix DNA-binding motif, class 1; BRCT; TIGRFAM: NAD-dependent DNA ligase; KEGG: smd:Smed_2070 NAD-dependent DNA ligase LigA; HAMAP: NAD-dependent DNA ligase; PFAM: NAD-dependent DNA ligase, adenylation; NAD-dependent DNA ligase, OB-fold; BRCT
YP_005714137.1	KEGG: smd:Smed_2071 DNA repair protein RecN; TIGRFAM: DNA recombination/repair protein RecN; PFAM: RecF/RecN/SMC
YP_005714138.1	TIGRFAM: Outer membrane assembly lipoprotein YfiO; KEGG: smd:Smed_2072 hypothetical protein
YP_005714139.1	TIGRFAM: UDP-3-O-acyl N-acetylglucosamine deacetylase; HAMAP: UDP-3-O-acyl N-acetylglucosamine deacetylase; KEGG: smd:Smed_2073 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; PFAM: UDP-3-O-acyl N-acetylglucosamine deacetylase
YP_005714140.1	TIGRFAM: Cell division protein FtsZ, N-terminal; Cell division protein FtsZ, C-terminal extension; PFAM: Tubulin/FtsZ, GTPase domain; Tubulin/FtsZ, 2-layer sandwich domain; KEGG: smd:Smed_2074 cell division protein FtsZ; SMART: Tubulin/FtsZ, GTPase domain; Tubulin/FtsZ, 2-layer sandwich domain
YP_005714141.1	TIGRFAM: Cell division protein family FtsA; PFAM: Cell division protein FtsA domain; KEGG: smd:Smed_2075 cell division protein FtsA; SMART: Cell division protein FtsA domain
YP_005714142.1	PFAM: Cell division protein FtsQ; Polypeptide-transport-associated, FtsQ-type; KEGG: smd:Smed_2076 cell division protein FtsQ
YP_005714143.1	PFAM: D-alanine--D-alanine ligase, C-terminal; D-alanine--D-alanine ligase, N-terminal; TIGRFAM: D-alanine--D-alanine ligase; HAMAP: D-alanine--D-alanine ligase; KEGG: smd:Smed_2077 D-alanine--D-alanine ligase
YP_005714144.1	TIGRFAM: Aquaporin; HAMAP: Aquaporin Z; KEGG: smd:Smed_2078 aquaporin Z; PFAM: Major intrinsic protein
YP_005714145.1	KEGG: smd:Smed_2079 major facilitator superfamily metabolite/H(+) symporter; TIGRFAM: Citrate-proton symport; PFAM: General substrate transporter
YP_005714146.1	PFAM: UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal; FAD linked oxidase, N-terminal; TIGRFAM: UDP-N-acetylenolpyruvoylglucosamine reductase; HAMAP: UDP-N-acetylenolpyruvoylglucosamine reductase; KEGG: smd:Smed_2080 UDP-N-acetylenolpyruvoylglucosamine reductase
YP_005714147.1	PFAM: Mur ligase, N-terminal; Mur ligase, central; Mur ligase, C-terminal; TIGRFAM: UDP-N-acetylmuramate-alanine ligase; HAMAP: UDP-N-acetylmuramate-alanine ligase; KEGG: smd:Smed_2081 UDP-N-acetylmuramate--L-alanine ligase
YP_005714148.1	TIGRFAM: N-acetylglucosaminyltransferase, MurG; HAMAP: N-acetylglucosaminyltransferase, MurG; KEGG: smd:Smed_2082 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; PFAM: Glycosyl transferase, family 28, C-terminal; Glycosyl transferase, family 28
YP_005714149.1	KEGG: smd:Smed_2083 cell division protein FtsW; TIGRFAM: Cell division protein FtsW; PFAM: Cell cycle protein
YP_005714150.1	PFAM: Mur ligase, central; Mur ligase, C-terminal; TIGRFAM: UDP-N-acetylmuramoylalanine-D-glutamate ligase; HAMAP: UDP-N-acetylmuramoylalanine-D-glutamate ligase; KEGG: smd:Smed_2084 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
YP_005714151.1	TIGRFAM: Phospho-N-acetylmuramoyl-pentapeptide transferase; HAMAP: Phospho-N-acetylmuramoyl-pentapeptide transferase; KEGG: smd:Smed_2085 phospho-N-acetylmuramoyl-pentapeptide-transferase; PFAM: Glycosyl transferase, family 4; Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site
YP_005714152.1	TIGRFAM: UDP-MurNAc-pentapeptide synthetase; KEGG: smd:Smed_2086 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl- D-alanyl ligase; PFAM: Mur ligase, central; Mur ligase, N-terminal; Mur ligase, C-terminal
YP_005714153.1	PFAM: Mur ligase, central; Mur ligase, N-terminal; Mur ligase, C-terminal; TIGRFAM: UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase; HAMAP: UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase; KEGG: smd:Smed_2087 UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
YP_005714154.1	KEGG: smd:Smed_2088 peptidoglycan glycosyltransferase; PFAM: Penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain
YP_005714155.1	KEGG: smd:Smed_2089 hypothetical protein
YP_005714156.1	TIGRFAM: S-adenosyl-L-methionine-dependent methyltransferase, MraW; HAMAP: S-adenosyl-L-methionine-dependent methyltransferase, MraW; KEGG: smd:Smed_2090 S-adenosyl-methyltransferase MraW; PFAM: S-adenosyl-L-methionine-dependent methyltransferase, MraW
YP_005714157.1	KEGG: rhi:NGR_c21160 cell division protein MraZ; HAMAP: MraZ; PFAM: MraZ domain
YP_005714158.1	PFAM: FAD dependent oxidoreductase; KEGG: smd:Smed_2102 FAD dependent oxidoreductase
YP_005714159.1	PFAM: Lytic transglycosylase-like, catalytic; KEGG: smd:Smed_2103 lytic transglycosylase catalytic
YP_005714160.1	KEGG: smd:Smed_2104 N-acetylmuramoyl-L-alanine amidase; PFAM: N-acetylmuramoyl-L-alanine amidase, family 2; Peptidoglycan binding-like; SMART: N-acetylmuramoyl-L-alanine amidase, family 2
YP_005714161.1	KEGG: smd:Smed_2105 heat shock protein DnaJ domain-containing protein; PFAM: Heat shock protein DnaJ, N-terminal; SMART: Heat shock protein DnaJ, N-terminal
YP_005714162.1	KEGG: smd:Smed_2106 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; PFAM: Phosphofructokinase domain
YP_005714163.1	PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: smd:Smed_2107 lysine exporter protein LysE/YggA
YP_005714164.1	PFAM: Lytic transglycosylase-like, catalytic; KEGG: smd:Smed_2108 lytic transglycosylase catalytic
YP_005714165.1	PFAM: Beta-lactamase-related; KEGG: smd:Smed_2109 beta-lactamase
YP_005714166.1	KEGG: smd:Smed_2110 hypothetical protein
YP_005714167.1	PFAM: Methyltransferase type 11; KEGG: smd:Smed_2111 methyltransferase type 11
YP_005714168.1	PFAM: Glycoside hydrolase, family 25; KEGG: smd:Smed_2112 glycoside hydrolase family protein; SMART: Glycoside hydrolase, family 25 subgroup
YP_005714169.1	KEGG: smd:Smed_2113 lytic murein transglycosylase; TIGRFAM: Lytic murein transglycosylase; PFAM: Peptidoglycan binding-like
YP_005714170.1	PFAM: Drug/metabolite transporter; KEGG: smd:Smed_2114 hypothetical protein
YP_005714171.1	TIGRFAM: 5,10-methylenetetrahydrofolate reductase; KEGG: smd:Smed_2115 5,10-methylenetetrahydrofolate reductase; PFAM: Methylenetetrahydrofolate reductase
YP_005714172.1	KEGG: smd:Smed_2116 methyltransferase type 11; PFAM: Methyltransferase type 11; HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR
YP_005714173.1	SMART: ATPase, AAA+ type, core; TIGRFAM: ABC transporter ATP-binding protein, ChvD; KEGG: smd:Smed_2117 putative ABC transporter ATP-binding protein; PFAM: ABC transporter-like
YP_005714174.1	PFAM: Ribonuclease T2; KEGG: smd:Smed_2118 putative ribonuclease protein
YP_005714175.1	PFAM: Alpha/beta hydrolase fold-1; KEGG: smd:Smed_2119 hypothetical protein
YP_005714176.1	PFAM: Drug/metabolite transporter; KEGG: smd:Smed_2120 hypothetical protein
YP_005714177.1	KEGG: smd:Smed_2121 thiamine pyrophosphate protein; PFAM: Thiamine pyrophosphate enzyme, C-terminal TPP-binding; Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain; Thiamine pyrophosphate enzyme, central domain
YP_005714178.1	KEGG: smd:Smed_2123 hypothetical protein; TIGRFAM: Beta-lactamase hydrolase-like; PFAM: Beta-lactamase hydrolase-like
YP_005714179.1	KEGG: smd:Smed_2124 hypothetical protein
YP_005714180.1	PFAM: YkuD domain; Peptidoglycan binding-like; KEGG: smd:Smed_2125 ErfK/YbiS/YcfS/YnhG family protein
YP_005714181.1	PFAM: FAD dependent oxidoreductase; KEGG: smd:Smed_2126 FAD dependent oxidoreductase
YP_005714182.1	PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: smd:Smed_2127 cobyrinic acid ac-diamide synthase
YP_005714183.1	KEGG: smd:Smed_2128 iron-containing alcohol dehydrogenase; PFAM: Alcohol dehydrogenase, iron-type
YP_005714184.1	PFAM: Aldehyde dehydrogenase domain; KEGG: rhi:NGR_c21440 aldehyde dehydrogenase
YP_005714185.1	KEGG: smd:Smed_2130 glutamine synthetase catalytic region; PFAM: Glutamine synthetase, catalytic domain; Glutamine synthetase, beta-Grasp
YP_005714186.1	PFAM: Amino acid permease domain; KEGG: smd:Smed_2131 amino acid permease-associated region
YP_005714187.1	PFAM: N-formylglutamate amidohydrolase; KEGG: smd:Smed_2132 N-formylglutamate amidohydrolase
YP_005714188.1	PFAM: Sugar isomerase (SIS); Helix-turn-helix protein RpiR; KEGG: smd:Smed_2133 RpiR family transcriptional regulator
YP_005714189.1	PFAM: Bacterial extracellular solute-binding, family 1; KEGG: smd:Smed_2134 extracellular solute-binding protein
YP_005714190.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_2135 binding-protein-dependent transport systems inner membrane component
YP_005714191.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_2136 binding-protein-dependent transport systems inner membrane component
YP_005714192.1	PFAM: ABC transporter-like; Transport-associated OB, type 2; KEGG: smd:Smed_2137 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_005714193.1	HAMAP: 6,7-dimethyl-8-ribityllumazine synthase; KEGG: smd:Smed_2138 riboflavin synthase subunit beta; PFAM: 6,7-dimethyl-8-ribityllumazine synthase
YP_005714194.1	KEGG: smd:Smed_2139 helix-turn-helix domain-containing protein; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain
YP_005714195.1	KEGG: smd:Smed_2140 ferrichrome receptor precursor protein; TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel
YP_005714196.1	PFAM: Transposase, mutator type; KEGG: sjp:SJA_P2-00250 putative transposase
YP_005714197.1	KEGG: smd:Smed_2149 ribose-5-phosphate isomerase B; TIGRFAM: Ribose/galactose isomerase; PFAM: Ribose/galactose isomerase
YP_005714198.1	TIGRFAM: Triosephosphate isomerase; KEGG: smd:Smed_2150 triosephosphate isomerase; PFAM: Triosephosphate isomerase
YP_005714199.1	KEGG: smd:Smed_2151 DeoR family transcriptional regulator; PFAM: HTH transcriptional regulator, DeoR; HTH transcriptional regulator, DeoR N-terminal; SMART: HTH transcriptional regulator, DeoR N-terminal
YP_005714200.1	PFAM: Xylose isomerase, TIM barrel domain; KEGG: smd:Smed_2152 xylose isomerase domain-containing protein
YP_005714201.1	KEGG: smd:Smed_2153 HAD family hydrolase; TIGRFAM: HAD-superfamily hydrolase, subfamily IIA, hypothetical 3; HAD-superfamily hydrolase, subfamily IIA; PFAM: Haloacid dehalogenase-like hydrolase
YP_005714202.1	PFAM: Carbohydrate kinase, FGGY, N-terminal; Carbohydrate kinase, FGGY, C-terminal; KEGG: smd:Smed_2154 carbohydrate kinase FGGY
YP_005714203.1	PFAM: Class II aldolase/adducin, N-terminal; KEGG: smd:Smed_2155 class II aldolase/adducin family protein
YP_005714204.1	KEGG: smd:Smed_2156 glycerol-3-phosphate dehydrogenase; PFAM: FAD dependent oxidoreductase
YP_005714205.1	KEGG: smd:Smed_2157 class II aldolase/adducin family protein; PFAM: Class II aldolase/adducin, N-terminal
YP_005714206.1	KEGG: smd:Smed_2158 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
YP_005714207.1	KEGG: smd:Smed_2159 carbohydrate kinase FGGY; PFAM: Carbohydrate kinase, FGGY, N-terminal; Carbohydrate kinase, FGGY, C-terminal
YP_005714208.1	PFAM: ABC transporter-like; Transport-associated OB, type 2; KEGG: smd:Smed_2160 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_005714209.1	PFAM: ABC transporter-like; Transport-associated OB, type 2; KEGG: smd:Smed_2161 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_005714210.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_2162 binding-protein-dependent transport systems inner membrane component
YP_005714211.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_2163 binding-protein-dependent transport systems inner membrane component
YP_005714212.1	PFAM: Bacterial extracellular solute-binding, family 1; Twin-arginine translocation pathway, signal sequence, bacterial/archaeal; KEGG: smd:Smed_2164 extracellular solute-binding protein
YP_005714213.1	PFAM: Sugar-binding domain, putative; KEGG: smd:Smed_2165 DeoR family transcriptional regulator
YP_005714214.1	KEGG: rhi:NGR_b03650 putative transcriptional regulator, LuxR family; PFAM: Transcription regulator LuxR, C-terminal; SMART: Transcription regulator LuxR, C-terminal
YP_005714215.1	SMART: ATPase, AAA+ type, core; TIGRFAM: Spermidine/putrescine ABC transporter ATP-binding subunit; KEGG: smd:Smed_2167 spermidine/putrescine ABC transporter ATPase subunit; PFAM: ABC transporter-like; Transport-associated OB, type 2
YP_005714216.1	PFAM: Bacterial extracellular solute-binding, family 1; KEGG: smd:Smed_2168 putative periplasmic binding ABC transporter protein
YP_005714217.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_2169 binding-protein-dependent transport systems inner membrane component
YP_005714218.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_2170 binding-protein-dependent transport systems inner membrane component
YP_005714219.1	KEGG: smd:Smed_2171 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR
YP_005714220.1	KEGG: smd:Smed_2172 helix-turn-helix domain-containing protein; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain
YP_005714221.1	PFAM: Protein of unknown function DUF849, prokaryotic; KEGG: smd:Smed_2173 hypothetical protein
YP_005714222.1	KEGG: smd:Smed_2174 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; PFAM: 3-hydroxyacyl-CoA dehydrogenase, NAD binding; 3-hydroxyacyl-CoA dehydrogenase, C-terminal
YP_005714223.1	KEGG: rhi:NGR_c21590 putative acyl-CoA dehydrogenase; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, central domain
YP_005714224.1	KEGG: smd:Smed_2176 CoA-binding domain-containing protein; PFAM: CoA-binding; SMART: CoA-binding
YP_005714225.1	PFAM: Crotonase, core; KEGG: smd:Smed_2177 carnitinyl-CoA dehydratase
YP_005714226.1	PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: smd:Smed_2178 extracellular solute-binding protein
YP_005714227.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_2179 binding-protein-dependent transport systems inner membrane component
YP_005714228.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_2180 binding-protein-dependent transport systems inner membrane component
YP_005714229.1	KEGG: rhi:NGR_c21650 putative ATP-binding component of ABC transporter; PFAM: ABC transporter-like; Oligopeptide/dipeptide ABC transporter, C-terminal; SMART: ATPase, AAA+ type, core
YP_005714230.1	KEGG: smd:Smed_2182 putative transcriptional regulator; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3
YP_005714231.1	PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: smd:Smed_2183 extracellular solute-binding protein
YP_005714232.1	KEGG: smd:Smed_2184 peptidase S15; TIGRFAM: CocE/NonD hydrolase; SMART: Peptidase S15/CocE/NonD, C-terminal
YP_005714233.1	PFAM: Protein of unknown function DUF2241; KEGG: ppg:PputGB1_3028 hypothetical protein
YP_005714234.1	KEGG: smd:Smed_2185 alpha/beta hydrolase domain-containing protein
YP_005714235.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: rhi:NGR_c21680 putative transcriptional regulator, LysR family
YP_005714236.1	PFAM: Bacterial extracellular solute-binding, family 1; KEGG: smd:Smed_2187 extracellular solute-binding protein
YP_005714237.1	PFAM: ABC transporter-like; Transport-associated OB, type 2; KEGG: smd:Smed_2188 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_005714238.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_2189 binding-protein-dependent transport systems inner membrane component
YP_005714239.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_2190 binding-protein-dependent transport systems inner membrane component
YP_005714240.1	KEGG: smd:Smed_2191 gamma-aminobutyraldehyde dehydrogenase; PFAM: Aldehyde dehydrogenase domain
YP_005714241.1	PFAM: FhuF/siderophore biosynthesis protein; KEGG: smd:Smed_2193 ferric iron reductase
YP_005714242.1	PFAM: Periplasmic binding protein; KEGG: smd:Smed_2194 ferrichrome/ferrioxamine B periplasmic transporter
YP_005714243.1	KEGG: smd:Smed_2195 hypothetical protein
YP_005714244.1	PFAM: Trimethylamine methyltransferase; KEGG: smd:Smed_2196 trimethylamine methyltransferase
YP_005714245.1	KEGG: smd:Smed_2197 FAD dependent oxidoreductase; PFAM: FAD dependent oxidoreductase; Glycine cleavage T-protein, N-terminal; Glycine cleavage T-protein, C-terminal barrel
YP_005714246.1	KEGG: smd:Smed_2198 FAD dependent oxidoreductase; PFAM: FAD dependent oxidoreductase; Glycine cleavage T-protein, N-terminal; Glycine cleavage T-protein, C-terminal barrel
YP_005714247.1	PFAM: HTH transcriptional regulator, LysR; LysR, substrate-binding; KEGG: smd:Smed_2199 LysR family transcriptional regulator
YP_005714248.1	PFAM: Uncharacterised conserved protein UCP007542; KEGG: smd:Smed_2200 hypothetical protein
YP_005714249.1	PFAM: Cys/Met metabolism, pyridoxal phosphate-dependent enzyme; KEGG: smd:Smed_2201 methionine gamma-lyase
YP_005714250.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: smd:Smed_2204 glyoxalase/bleomycin resistance protein/dioxygenase
YP_005714251.1	PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: smd:Smed_2205 TetR family transcriptional regulator
YP_005714252.1	PFAM: Crotonase, core; KEGG: smd:Smed_2206 enoyl-CoA hydratase
YP_005714253.1	PFAM: Protein of unknown function DUF1772; KEGG: smd:Smed_2207 hypothetical protein
YP_005714254.1	PFAM: Protein of unknown function DUF2329; KEGG: smd:Smed_2208 hypothetical protein
YP_005714255.1	KEGG: smd:Smed_2209 hypothetical protein; PFAM: Protein of unknown function DUF1194; SMART: von Willebrand factor, type A
YP_005714256.1	KEGG: smd:Smed_2210 hypothetical protein
YP_005714257.1	KEGG: smd:Smed_2211 hypothetical protein; TIGRFAM: YcaO-like; PFAM: YcaO-like
YP_005714258.1	KEGG: smd:Smed_2212 hypothetical protein
YP_005714259.1	KEGG: smd:Smed_2213 SARP family transcriptional regulator
YP_005714261.1	KEGG: smd:Smed_2214 aminoglycoside N(3')-acetyltransferase; PFAM: Aminoglycoside 3-N-acetyltransferase
YP_005714262.1	KEGG: smd:Smed_2279 GCN5-related N-acetyltransferase; manually curated; PFAM: GCN5-related N-acetyltransferase (GNAT) domain
YP_005714263.1	KEGG: smd:Smed_4456 hypothetical protein
YP_005714264.1	KEGG: rlg:Rleg_6080 hypothetical protein
YP_005714265.1	KEGG: bbt:BBta_4489 putative FMN-dependent alpha-hydroxy acid dehydrogenase family protein; PFAM: FMN-dependent dehydrogenase
YP_005714266.1	KEGG: ara:Arad_7004 hypothetical protein
YP_005714267.1	KEGG: avi:Avi_2125 hypothetical protein
YP_005714268.1	KEGG: rec:RHECIAT_CH0000287 putative haloacid dehydrogenase hydrolase protein; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase-like hydrolase
YP_005714269.1	PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: pap:PSPA7_2638 putative acetyltransferase
YP_005714270.1	KEGG: smd:Smed_5251 hypothetical protein
YP_005714271.1	KEGG: avi:Avi_3258 hypothetical protein
YP_005714272.1	KEGG: smd:Smed_5723 hypothetical protein
YP_005714273.1	KEGG: atu:Atu4427 replicative DNA helicase; manually curated; PFAM: DNA helicase, DnaB-like, C-terminal
YP_005714274.1	KEGG: ran:Riean_0743 lactoylglutathione lyase
YP_005714275.1	PFAM: Membrane bound O-acyl transferase, MBOAT; KEGG: gvi:gll0947 alginate O-acetylation protein
YP_005714276.1	KEGG: bpb:bpr_I0539 hypothetical protein
YP_005714277.1	KEGG: scl:sce8222 hypothetical protein
YP_005714278.1	TIGRFAM: FkbH domain; HAD-superfamily phosphatase, subfamily IIIC; KEGG: xau:Xaut_0884 FkbH like protein
YP_005714279.1	KEGG: mmw:Mmwyl1_1514 hypothetical protein
YP_005714280.1	KEGG: rlt:Rleg2_2435 hypothetical protein
YP_005714281.1	PFAM: Protein of unknown function DUF541; KEGG: smd:Smed_2216 hypothetical protein
YP_005714282.1	KEGG: smd:Smed_2217 putative signal peptide protein
YP_005714283.1	KEGG: smd:Smed_2218 hypothetical protein; TIGRFAM: Conserved hypothetical protein CHP02096; PFAM: Protein of unknown function DUF1486
YP_005714284.1	KEGG: smd:Smed_2219 hypothetical protein; TIGRFAM: Uncharacterised protein family UPF0047; PFAM: Uncharacterised protein family UPF0047
YP_005714285.1	PFAM: Protein of unknown function DUF1428; KEGG: smd:Smed_2220 hypothetical protein
YP_005714286.1	KEGG: smd:Smed_2221 putative transmembrane protein
YP_005714287.1	PFAM: GYD; KEGG: smd:Smed_2222 GYD family protein
YP_005714288.1	KEGG: smd:Smed_2223 RNA polymerase sigma factor RpoD; TIGRFAM: RNA polymerase sigma factor RpoD, C-terminal; RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 3; RNA polymerase sigma factor 70, region 1.1; RNA polymerase sigma-70 region 1.2; RNA polymerase sigma factor 70, non-essential domain; RNA polymerase sigma-70 region 2; RNA polymerase sigma-70 region 4
YP_005714289.1	KEGG: smd:Smed_2224 L-threonine 3-dehydrogenase; PFAM: Alcohol dehydrogenase GroES-like; Alcohol dehydrogenase, C-terminal; TIGRFAM: L-threonine 3-dehydrogenase; HAMAP: L-threonine 3-dehydrogenase; SMART: Polyketide synthase, enoylreductase
YP_005714290.1	TIGRFAM: 2-amino-3-ketobutyrate coenzyme A ligase; KEGG: smd:Smed_2225 2-amino-3-ketobutyrate coenzyme A ligase; PFAM: Aminotransferase, class I/classII
YP_005714291.1	TIGRFAM: DNA helicase, ATP-dependent, RecQ type, bacterial; DNA helicase, ATP-dependent, RecQ type; PFAM: RQC domain; DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Helicase, C-terminal; Helicase/RNase D C-terminal, HRDC domain; KEGG: smd:Smed_2226 ATP-dependent DNA helicase RecQ; SMART: RQC domain; DEAD-like helicase, N-terminal; Helicase, C-terminal; Helicase/RNase D C-terminal, HRDC domain
YP_005714292.1	KEGG: smd:Smed_2227 DNA primase; TIGRFAM: DNA primase, DnaG; PFAM: DNA primase, catalytic core, N-terminal; Zinc finger, CHC2-type; Toprim domain; DNA primase, DnaB-helicase binding domain
YP_005714293.1	KEGG: smd:Smed_2228 GatB/YqeY domain-containing protein
YP_005714294.1	TIGRFAM: Carbamoyl-phosphate synthase, small subunit; KEGG: smd:Smed_2229 carbamoyl phosphate synthase small subunit; PFAM: Glutamine amidotransferase class-I, C-terminal; Carbamoyl-phosphate synthase, small subunit, N-terminal
YP_005714295.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: smd:Smed_2230 LysR family transcriptional regulator
YP_005714296.1	PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: smd:Smed_2231 short-chain dehydrogenase/reductase SDR; SMART: Polyketide synthase/Fatty acid synthase, KR
YP_005714297.1	PFAM: 6-phosphogluconate dehydrogenase, NAD-binding; KEGG: smd:Smed_2232 6-phosphogluconate dehydrogenase NAD-binding
YP_005714298.1	KEGG: smd:Smed_2233 aspartate aminotransferase; PFAM: Aminotransferase, class I/classII
YP_005714299.1	KEGG: smd:Smed_2234 hypothetical protein
YP_005714300.1	KEGG: smd:Smed_2235 hypothetical protein
YP_005714301.1	KEGG: smd:Smed_2236 glucose sorbosone dehydrogenase
YP_005714302.1	PFAM: Drug/metabolite transporter; KEGG: smd:Smed_2237 hypothetical protein
YP_005714303.1	KEGG: smd:Smed_2238 cold-shock DNA-binding domain-containing protein; PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein
YP_005714304.1	PFAM: BA14K-like; KEGG: smd:Smed_2239 hypothetical protein
YP_005714305.1	KEGG: smd:Smed_2240 beta-lactamase domain-containing protein; PFAM: Beta-lactamase-like; SMART: Beta-lactamase-like
YP_005714306.1	KEGG: smd:Smed_2241 hypothetical protein
YP_005714307.1	PFAM: Protein of unknown function DUF1236; SH3, type 3; KEGG: smd:Smed_2242 hypothetical protein
YP_005714308.1	KEGG: smd:Smed_2243 hypothetical protein
YP_005714309.1	KEGG: smd:Smed_2244 MarR family transcriptional regulator; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR
YP_005714310.1	KEGG: smd:Smed_2245 two component transcriptional regulator; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal
YP_005714311.1	KEGG: smd:Smed_2246 integral membrane sensor signal transduction histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; HAMP linker domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; HAMP linker domain
YP_005714312.1	KEGG: smd:Smed_2247 export-related chaperone CsaA; TIGRFAM: Secretion chaperone CsaA; PFAM: tRNA-binding domain
YP_005714313.1	TIGRFAM: Pyrroline-5-carboxylate reductase; KEGG: smd:Smed_2249 pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase, coenzyme F420-dependent
YP_005714314.1	PFAM: Protein of unknown function DUF1790; KEGG: smd:Smed_2250 hypothetical protein
YP_005714315.1	PFAM: Protein of unknown function DUF526; KEGG: smd:Smed_2251 hypothetical protein
YP_005714316.1	TIGRFAM: Prolipoprotein diacylglyceryl transferase; HAMAP: Prolipoprotein diacylglyceryl transferase; KEGG: smd:Smed_2252 prolipoprotein diacylglyceryl transferase; PFAM: Prolipoprotein diacylglyceryl transferase
YP_005714317.1	PFAM: Protein of unknown function DUF185; KEGG: smd:Smed_2253 hypothetical protein
YP_005714318.1	KEGG: smd:Smed_2254 hypothetical protein; TIGRFAM: Multi-copper polyphenol oxidoreductase, laccase; PFAM: Multi-copper polyphenol oxidoreductase, laccase
YP_005714319.1	PFAM: Peptidase M24, structural domain; Creatinase; KEGG: smd:Smed_2255 peptidase M24
YP_005714320.1	KEGG: smd:Smed_2256 hypothetical protein
YP_005714321.1	TIGRFAM: Phosphoribosyl pyrophosphokinase; KEGG: smd:Smed_2257 ribose-phosphate pyrophosphokinase; PFAM: Phosphoribosyltransferase
YP_005714322.1	KEGG: smd:Smed_2258 hypothetical protein
YP_005714323.1	PFAM: Protein of unknown function DUF779; KEGG: rhi:NGR_c23140 hypothetical protein
YP_005714324.1	PFAM: Aldehyde dehydrogenase domain; KEGG: smd:Smed_2260 aldehyde dehydrogenase
YP_005714325.1	PFAM: GAF; Helix-turn-helix, Fis-type; KEGG: smd:Smed_2261 fis family transcriptional regulator
YP_005714326.1	KEGG: smd:Smed_2262 benzoate transporter; TIGRFAM: Benzoate membrane transport protein; PFAM: Benzoate membrane transport protein
YP_005714327.1	TIGRFAM: Ribosomal protein L25, long-form; HAMAP: Ribosomal protein L25, long-form; KEGG: smd:Smed_2263 50S ribosomal protein L25/general stress protein Ctc; PFAM: Ribosomal protein L25, short-form
YP_005714328.1	PFAM: Peptidyl-tRNA hydrolase; TIGRFAM: Peptidyl-tRNA hydrolase; HAMAP: Peptidyl-tRNA hydrolase; KEGG: smd:Smed_2264 peptidyl-tRNA hydrolase
YP_005714329.1	KEGG: smd:Smed_2265 ATP-dependent Clp protease adaptor; HAMAP: ATP-dependent Clp protease adaptor protein ClpS; PFAM: Adaptor protein ClpS, core
YP_005714330.1	KEGG: smd:Smed_2266 GTP-dependent nucleic acid-binding protein EngD; TIGRFAM: Conserved hypothetical protein CHP00092; PFAM: Domain of unknown function DUF933; GTP-binding protein, HSR1-related
YP_005714332.1	PFAM: MaoC-like dehydratase; KEGG: smd:Smed_2268 dehydratase
YP_005714333.1	PFAM: MaoC-like dehydratase; KEGG: smd:Smed_2269 dehydratase
YP_005714334.1	TIGRFAM: Adenine phosphoribosyl transferase; HAMAP: Adenine phosphoribosyl transferase; KEGG: smd:Smed_2270 adenine phosphoribosyltransferase; PFAM: Phosphoribosyltransferase
YP_005714335.1	KEGG: smd:Smed_2271 hypothetical protein
YP_005714336.1	PFAM: Poly A polymerase, head domain; KEGG: smd:Smed_2272 polynucleotide adenylyltransferase region
YP_005714337.1	PFAM: NUDIX hydrolase domain; KEGG: smd:Smed_2273 NUDIX hydrolase
YP_005714338.1	PFAM: Protein of unknown function DUF1285; KEGG: rhi:NGR_c23340 hypothetical protein
YP_005714339.1	PFAM: ATPase, AAA-3; KEGG: smd:Smed_2275 ATPase
YP_005714340.1	PFAM: Domain of unknown function DUF58; KEGG: smd:Smed_2276 hypothetical protein
YP_005714341.1	TIGRFAM: Double transmembrane domain; KEGG: smd:Smed_2277 hypothetical protein
YP_005714342.1	PFAM: Domain of unknown function DUF1355; KEGG: smd:Smed_2278 hypothetical protein
YP_005714343.1	PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: smd:Smed_2280 GCN5-related N-acetyltransferase
YP_005714344.1	KEGG: smd:Smed_2281 putative glutathione S-transferase; PFAM: Glutathione S-transferase, C-terminal
YP_005714345.1	KEGG: oan:Oant_4542 hypothetical protein
YP_005714346.1	PFAM: Filamentation induced by cAMP/death on curing-related; KEGG: avi:Avi_9907 cell filamentation protein
YP_005714347.1	PFAM: NUDIX hydrolase domain; KEGG: smd:Smed_2282 NUDIX hydrolase
YP_005714348.1	PFAM: Metallo-dependent phosphatase; KEGG: smd:Smed_2283 metallophosphoesterase
YP_005714349.1	KEGG: smd:Smed_2284 ECF subfamily RNA polymerase sigma-24 factor; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2
YP_005714350.1	KEGG: smd:Smed_2285 putative transmembrane anti-sigma factor
YP_005714351.1	PFAM: PilT protein, N-terminal; KEGG: ara:Arad_1786 hypothetical protein
YP_005714352.1	PFAM: Rv0623-like transcription factor; KEGG: smd:Smed_2286 transcription factor
YP_005714353.1	SMART: 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain; TIGRFAM: Yeast 2-isopropylmalate synthase; KEGG: smd:Smed_2287 2-isopropylmalate synthase; PFAM: Pyruvate carboxyltransferase; 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain
YP_005714354.1	HAMAP: Peptidase S14, ClpP; KEGG: smd:Smed_2289 ATP-dependent Clp protease proteolytic subunit; PFAM: Peptidase S14, ClpP
YP_005714355.1	KEGG: smd:Smed_2293 7-cyano-7-deazaguanine reductase; manually curated; TIGRFAM: Nitrile oxidoreductase, NADPH-dependent, QueF; PFAM: GTP cyclohydrolase I/Nitrile oxidoreductase; HAMAP: Nitrile oxidoreductase, NADPH-dependent, QueF
YP_005714356.1	KEGG: smd:Smed_2294 cation diffusion facilitator family transporter; TIGRFAM: Cation efflux protein; PFAM: Cation efflux protein
YP_005714357.1	TIGRFAM: Anthranilate synthase, clad 3; Anthranilate synthase, glutamine amidotransferase domain; KEGG: smd:Smed_2295 anthranilate synthase; PFAM: Chorismate binding, C-terminal; Anthranilate synthase component I, N-terminal; Glutamine amidotransferase class-I, C-terminal
YP_005714358.1	KEGG: rlg:Rleg_3079 TonB-dependent hemoglobin/transferrin/lactoferrin family receptor; TIGRFAM: TonB-dependent haemoglobin/transferrin/lactoferrin receptor; TonB-dependent haem/haemoglobin receptor; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug
YP_005714359.1	PFAM: Extensin-like, C-terminal; KEGG: smd:Smed_2297 extensin family protein
YP_005714360.1	HAMAP: Formate-tetrahydrofolate ligase, FTHFS; KEGG: rhi:NGR_c23560 formate--tetrahydrofolate ligase; PFAM: Formate-tetrahydrofolate ligase, FTHFS
YP_005714361.1	KEGG: smd:Smed_2299 hypothetical protein
YP_005714362.1	KEGG: smd:Smed_2300 hypothetical protein
YP_005714363.1	PFAM: Transposase, IS4-like; KEGG: rhi:NGR_b15530 putative transposase Y4zB-like protein
YP_005714364.1	PFAM: Domain of unknown function DUF559; KEGG: smd:Smed_2301 hypothetical protein
YP_005714365.1	KEGG: smd:Smed_2302 hypothetical protein
YP_005714366.1	KEGG: rhi:NGR_c23600 hypothetical protein
YP_005714367.1	KEGG: smd:Smed_2304 hypothetical protein
YP_005714368.1	KEGG: rhi:NGR_c23630 thymidine kinase; PFAM: Thymidine kinase
YP_005714369.1	KEGG: smd:Smed_2305 substrate-binding region of ABC-type glycine betaine transport system; TIGRFAM: ABC transporter, choline, substrate-binding protein; PFAM: ABC-type glycine betaine transport system, substrate-binding domain
YP_005714370.1	KEGG: smd:Smed_2306 binding-protein-dependent transport systems inner membrane component; TIGRFAM: ABC transporter, choline, permease protein; PFAM: Binding-protein-dependent transport systems inner membrane component
YP_005714371.1	SMART: ATPase, AAA+ type, core; TIGRFAM: ABC transporter, Choline, ATP-binding subunit; KEGG: smd:Smed_2307 ABC transporter related; PFAM: ABC transporter-like
YP_005714372.1	PFAM: Protein of unknown function DUF2470; Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain; KEGG: smd:Smed_2308 pyridoxamine 5'-phosphate oxidase-related FMN-binding
YP_005714373.1	KEGG: smd:Smed_2309 regulatory protein ArsR; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR
YP_005714374.1	PFAM: ATPase, AAA-type, core; KEGG: smd:Smed_2310 hypothetical protein
YP_005714375.1	KEGG: smd:Smed_2317 omega amino acid--pyruvate transaminase; PFAM: Aminotransferase class-III
YP_005714376.1	PFAM: Amidohydrolase 1; TIGRFAM: Adenine deaminase; HAMAP: Adenine deaminase; KEGG: smd:Smed_2318 adenine deaminase
YP_005714377.1	KEGG: smd:Smed_2320 alpha amylase catalytic region; PFAM: Glycosyl hydrolase, family 13, catalytic domain; SMART: Glycosyl hydrolase, family 13, subfamily, catalytic domain
YP_005714378.1	KEGG: smd:Smed_2321 ribokinase-like domain-containing protein; PFAM: Carbohydrate/purine kinase
YP_005714379.1	PFAM: ABC transporter-like; KEGG: smd:Smed_2322 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_005714380.1	PFAM: ABC transporter-like; Oligopeptide/dipeptide ABC transporter, C-terminal; KEGG: smd:Smed_2323 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_005714381.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_2324 binding-protein-dependent transport systems inner membrane component
YP_005714382.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_2325 binding-protein-dependent transport systems inner membrane component
YP_005714383.1	PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: smd:Smed_2326 extracellular solute-binding protein
YP_005714384.1	PFAM: Peptidase M19, renal dipeptidase; KEGG: smd:Smed_2327 peptidase M19 renal dipeptidase
YP_005714385.1	PFAM: Small multidrug resistance protein; KEGG: smd:Smed_2328 small multidrug resistance protein
YP_005714386.1	PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: smd:Smed_2329 TetR family transcriptional regulator
YP_005714387.1	KEGG: gpb:HDN1F_31070 nitrogen regulatory protein; PFAM: Transcription regulator AbrB/SpoV, predicted; SMART: Transcription regulator AbrB/SpoV, predicted
YP_005714388.1	KEGG: vei:Veis_4147 PilT domain-containing protein; PFAM: PilT protein, N-terminal; SMART: Nucleotide binding protein, PINc
YP_005714389.1	PFAM: Globin, truncated bacterial-like; KEGG: rhi:NGR_c24500 putative globin family protein
YP_005714390.1	PFAM: Protein of unknown function DUF423; KEGG: smd:Smed_2331 hypothetical protein
YP_005714391.1	PFAM: Prevent-host-death protein; KEGG: rlg:Rleg_2910 prevent-host-death family protein
YP_005714392.1	PFAM: Antibiotic biosynthesis monooxygenase; KEGG: smd:Smed_2332 antibiotic biosynthesis monooxygenase
YP_005714393.1	KEGG: smd:Smed_2333 hypothetical protein
YP_005714394.1	KEGG: smd:Smed_2334 hypothetical protein
YP_005714395.1	TIGRFAM: TonB, C-terminal; KEGG: smd:Smed_2335 TonB family protein
YP_005714396.1	KEGG: smd:Smed_2336 hypothetical protein
YP_005714397.1	KEGG: smd:Smed_2337 hemin uptake protein-like protein; manually curated; PFAM: Hemin uptake protein HemP
YP_005714398.1	PFAM: Haemin-degrading HemS; KEGG: smd:Smed_2338 hemin-degrading family protein
YP_005714399.1	PFAM: Periplasmic binding protein; KEGG: smd:Smed_2339 periplasmic binding protein
YP_005714400.1	PFAM: ABC transporter permease protein; KEGG: smd:Smed_2340 transport system permease protein
YP_005714401.1	PFAM: ABC transporter-like; KEGG: smd:Smed_2341 hemin importer ATP-binding subunit; SMART: ATPase, AAA+ type, core
YP_005714402.1	PFAM: Protein of unknown function DUF883, ElaB; KEGG: smd:Smed_2342 hypothetical protein
YP_005714403.1	KEGG: smd:Smed_2343 hypothetical protein
YP_005714404.1	TIGRFAM: PAS; PFAM: Signal transduction histidine kinase, HWE region; PAS fold-3; GAF; KEGG: smd:Smed_2344 signal transduction histidine kinase; SMART: Signal transduction histidine kinase, HWE region; PAS
YP_005714405.1	KEGG: smd:Smed_2345 RNA polymerase sigma factor; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2
YP_005714406.1	KEGG: smd:Smed_2346 hypothetical protein
YP_005714407.1	KEGG: smd:Smed_2347 two-component response regulator; PFAM: Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain
YP_005714409.1	TIGRFAM: Carbohydrate kinase, FGGY-related; KEGG: smd:Smed_2351 FGGY-family pentulose kinase; PFAM: Carbohydrate kinase, FGGY, N-terminal; Carbohydrate kinase, FGGY, C-terminal
YP_005714410.1	KEGG: smd:Smed_2352 HAD family hydrolase; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase-like hydrolase
YP_005714411.1	KEGG: smd:Smed_2353 mannitol dehydrogenase domain-containing protein; PFAM: Mannitol dehydrogenase, C-terminal; Mannitol dehydrogenase, N-terminal
YP_005714412.1	PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: smd:Smed_2354 sorbitol dehydrogenase; SMART: Polyketide synthase/Fatty acid synthase, KR
YP_005714413.1	PFAM: ABC transporter-like; Transport-associated OB, type 2; KEGG: smd:Smed_2355 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_005714414.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_2356 binding-protein-dependent transport systems inner membrane component
YP_005714415.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_2357 binding-protein-dependent transport systems inner membrane component
YP_005714416.1	PFAM: Bacterial extracellular solute-binding, family 1; KEGG: smd:Smed_2358 extracellular solute-binding protein
YP_005714417.1	PFAM: Sugar-binding domain, putative; KEGG: smd:Smed_2359 DeoR family transcriptional regulator
YP_005714418.1	KEGG: smd:Smed_2360 putative oxidoreductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase
YP_005714419.1	TIGRFAM: Dihydroorotate dehydrogenase, class 1; KEGG: smd:Smed_2361 dihydropyrimidine dehydrogenase; PFAM: Dihydroorotate dehydrogenase, class 1/ 2; tRNA-dihydrouridine synthase; 4Fe-4S binding domain
YP_005714420.1	PFAM: Alcohol dehydrogenase, C-terminal; Alcohol dehydrogenase GroES-like; KEGG: smd:Smed_2362 alcohol dehydrogenase; SMART: Polyketide synthase, enoylreductase
YP_005714421.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: smd:Smed_2363 LysR family transcriptional regulator
YP_005714422.1	KEGG: smd:Smed_2364 putative adenylate/guanylate cyclase; PFAM: Adenylyl cyclase class-3/4/guanylyl cyclase; Ferredoxin; SMART: Adenylyl cyclase class-3/4/guanylyl cyclase
YP_005714423.1	PFAM: Transcription regulator YcdC, C-terminal; Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: smd:Smed_2365 TetR family transcriptional regulator
YP_005714424.1	TIGRFAM: Amidase, hydantoinase/carbamoylase; KEGG: smd:Smed_2366 allantoate amidohydrolase; PFAM: Peptidase M20; Peptidase M20, dimerisation
YP_005714425.1	TIGRFAM: D-hydantoinase; KEGG: smd:Smed_2367 phenylhydantoinase; PFAM: Amidohydrolase 1
YP_005714426.1	PFAM: Cupin 2, conserved barrel; KEGG: smd:Smed_2368 cupin 2 domain-containing protein
YP_005714427.1	PFAM: ABC transporter-like; KEGG: smd:Smed_2369 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_005714428.1	PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: smd:Smed_2370 GCN5-related N-acetyltransferase
YP_005714429.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_2371 binding-protein-dependent transport systems inner membrane component
YP_005714430.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_2372 binding-protein-dependent transport systems inner membrane component
YP_005714431.1	KEGG: rhi:NGR_c24890 ABC-type nitrate/sulfonate/bicarbonate transportsystems periplasmic components-like protein
YP_005714432.1	KEGG: smd:Smed_2374 RND family efflux transporter MFP subunit; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD
YP_005714433.1	PFAM: Acriflavin resistance protein; KEGG: smd:Smed_2375 acriflavin resistance protein
YP_005714434.1	TIGRFAM: Urease accessory protein UreG; HAMAP: Urease accessory protein UreG; KEGG: rhi:NGR_c24930 urease accessory protein UreG; PFAM: Cobalamin (vitamin B12) biosynthesis CobW-like
YP_005714435.1	KEGG: smd:Smed_2378 urease accessory protein UreF; HAMAP: Urease accessory protein UreF; PFAM: Urease accessory protein UreF
YP_005714436.1	KEGG: smd:Smed_2379 urease accessory protein UreE; HAMAP: Urease accessory protein UreE; PFAM: UreE urease accessory, C-terminal; UreE urease accessory, N-terminal
YP_005714437.1	PFAM: Antibiotic biosynthesis monooxygenase; KEGG: smd:Smed_2380 antibiotic biosynthesis monooxygenase
YP_005714438.1	PFAM: Redoxin; KEGG: smd:Smed_2381 peroxiredoxin
YP_005714439.1	KEGG: gpb:HDN1F_36150 protein of unknown function DUF1044
YP_005714440.1	KEGG: alv:Alvin_3149 transcriptional regulator, XRE family; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3
YP_005714441.1	PFAM: Amidohydrolase 1; Urease alpha-subunit, N-terminal; TIGRFAM: Urease, alpha subunit; HAMAP: Urease, alpha subunit; KEGG: rhi:NGR_c25000 urease subunit alpha
YP_005714442.1	KEGG: smd:Smed_2384 putative urease accessory protein
YP_005714443.1	PFAM: Protein of unknown function DUF1311; KEGG: smd:Smed_2385 hypothetical protein
YP_005714444.1	PFAM: Urease, beta subunit; TIGRFAM: Urease, beta subunit; HAMAP: Urease, beta subunit; KEGG: smd:Smed_2386 urease subunit beta
YP_005714445.1	PFAM: Protein of unknown function DUF1272; KEGG: smd:Smed_2387 hypothetical protein
YP_005714446.1	PFAM: Urease, alpha/gamma subunit; TIGRFAM: Urease, alpha/gamma subunit; HAMAP: Urease, gamma subunit; KEGG: rhi:NGR_c25050 urease subunit gamma
YP_005714447.1	KEGG: smd:Smed_2389 urease accessory protein UreD; HAMAP: Urease accessory protein UreD; PFAM: Urease accessory protein UreD
YP_005714448.1	KEGG: smd:Smed_2390 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
YP_005714449.1	KEGG: bpy:Bphyt_6690 alpha/beta hydrolase fold; PFAM: Alpha/beta hydrolase fold-1
YP_005714450.1	KEGG: rhi:NGR_c25090 putative transcriptional regulator protein, MarR family; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR
YP_005714451.1	PFAM: Extracellular ligand-binding receptor; KEGG: smd:Smed_2392 extracellular ligand-binding receptor
YP_005714452.1	KEGG: smd:Smed_2393 hypothetical protein
YP_005714453.1	PFAM: ABC transporter-like; KEGG: smd:Smed_2394 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_005714454.1	PFAM: ABC transporter-like; KEGG: smd:Smed_2395 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_005714455.1	PFAM: ABC transporter permease; KEGG: rhi:NGR_c25190 putative transmembrane component of ABC transporter
YP_005714456.1	PFAM: ABC transporter permease; KEGG: rhi:NGR_c25200 putative transmembrane component of ABC transporter
YP_005714457.1	KEGG: smd:Smed_2398 3'(2'),5'-bisphosphate nucleotidase; TIGRFAM: 3(2),5 -bisphosphate nucleotidase, bacterial; PFAM: Inositol monophosphatase
YP_005714458.1	KEGG: smd:Smed_2399 response regulator receiver protein
YP_005714459.1	PFAM: Cyclic nucleotide-binding domain; HTH transcriptional regulator, Crp; KEGG: smd:Smed_2400 CRP/FNR family transcriptional regulator
YP_005714460.1	PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: smd:Smed_2401 short-chain dehydrogenase/reductase SDR
YP_005714461.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; Phospholipase/carboxylesterase; KEGG: smd:Smed_2402 glyoxalase/bleomycin resistance protein/dioxygenase
YP_005714462.1	KEGG: cak:Caul_4973 hypothetical protein
YP_005714463.1	manually curated; KEGG: smd:Smed_6023 transposase
YP_005714464.1	PFAM: NADPH-dependent FMN reductase; KEGG: smd:Smed_2403 NADPH-dependent FMN reductase
YP_005714465.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: smd:Smed_2404 glyoxalase/bleomycin resistance protein/dioxygenase
YP_005714466.1	PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: smd:Smed_2405 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
YP_005714467.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_2406 binding-protein-dependent transport systems inner membrane component
YP_005714468.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_2407 binding-protein-dependent transport systems inner membrane component
YP_005714469.1	SMART: ATPase, AAA+ type, core; TIGRFAM: Spermidine/putrescine ABC transporter ATP-binding subunit; KEGG: smd:Smed_2408 spermidine/putrescine ABC transporter ATPase subunit; PFAM: ABC transporter-like; Transport-associated OB, type 2
YP_005714470.1	PFAM: Bacterial extracellular solute-binding, family 1; KEGG: smd:Smed_2409 extracellular solute-binding protein
YP_005714471.1	TIGRFAM: Putative agmatinase; KEGG: rhi:NGR_c25370 agmatinase SpeB; PFAM: Ureohydrolase
YP_005714472.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: smd:Smed_2411 LysR family transcriptional regulator
YP_005714473.1	KEGG: smd:Smed_2412 hypothetical protein; PFAM: Aminotransferase, class I/classII
YP_005714474.1	PFAM: Drug/metabolite transporter; KEGG: smd:Smed_2413 hypothetical protein
YP_005714475.1	KEGG: smd:Smed_2414 aldehyde dehydrogenase; PFAM: Aldehyde dehydrogenase domain
YP_005714476.1	KEGG: rhi:NGR_c25420 hypothetical protein
YP_005714477.1	PFAM: FAD dependent oxidoreductase; KEGG: smd:Smed_2415 FAD dependent oxidoreductase
YP_005714478.1	KEGG: smd:Smed_2416 glutamine synthetase catalytic region; PFAM: Glutamine synthetase, catalytic domain
YP_005714479.1	KEGG: smd:Smed_2417 GntR family transcriptional regulator; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: GntR, C-terminal; HTH transcriptional regulator, GntR
YP_005714480.1	KEGG: smd:Smed_2418 GntR domain-containing protein; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: GntR, C-terminal; HTH transcriptional regulator, GntR
YP_005714481.1	KEGG: smd:Smed_2419 hypothetical protein; PFAM: Cys/Met metabolism, pyridoxal phosphate-dependent enzyme
YP_005714482.1	PFAM: Bacterial extracellular solute-binding, family 1; KEGG: smd:Smed_2420 extracellular solute-binding protein
YP_005714483.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_2421 binding-protein-dependent transport systems inner membrane component
YP_005714484.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_2422 binding-protein-dependent transport systems inner membrane component
YP_005714485.1	PFAM: ABC transporter-like; Transport-associated OB, type 2; KEGG: smd:Smed_2423 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_005714486.1	PFAM: Cytochrome c, class I; KEGG: rhi:NGR_c25510 cytochrome c family protein
YP_005714487.1	PFAM: Cytochrome c oxidase subunit II C-terminal; KEGG: smd:Smed_2425 cytochrome c oxidase subunit II
YP_005714488.1	KEGG: smd:Smed_2426 cytochrome c oxidase subunit I type; TIGRFAM: Cytochrome c oxidase, subunit I bacterial type; PFAM: Cytochrome c oxidase, subunit I
YP_005714489.1	PFAM: Cytochrome c oxidase, subunit III; KEGG: smd:Smed_2427 cytochrome c oxidase subunit III
YP_005714490.1	PFAM: Cytochrome c oxidase, subunit III; KEGG: smd:Smed_2428 cytochrome c oxidase subunit III
YP_005714491.1	KEGG: smd:Smed_2429 hypothetical protein
YP_005714492.1	KEGG: rhi:NGR_c25660 putative dehydrogenase; PFAM: Glycine cleavage T-protein, N-terminal; FAD dependent oxidoreductase; Glycine cleavage T-protein, C-terminal barrel
YP_005714493.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: smd:Smed_4700 glyoxalase/bleomycin resistance protein/dioxygenase
YP_005714494.1	KEGG: smd:Smed_0908 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase
YP_005714495.1	KEGG: pde:Pden_2155 short chain dehydrogenase; PFAM: Short-chain dehydrogenase/reductase SDR
YP_005714496.1	PFAM: Alcohol dehydrogenase GroES-like; Alcohol dehydrogenase, C-terminal; KEGG: pde:Pden_2163 alcohol dehydrogenase; SMART: Polyketide synthase, enoylreductase
YP_005714497.1	KEGG: smd:Smed_0909 Rieske (2Fe-2S) domain-containing protein; TIGRFAM: MocE Rieske [2Fe-2S]; PFAM: Rieske [2Fe-2S] iron-sulphur domain
YP_005714498.1	KEGG: smd:Smed_0910 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase
YP_005714499.1	PFAM: Fatty acid hydroxylase; KEGG: smd:Smed_0911 sterol desaturase
YP_005714500.1	KEGG: smd:Smed_0913 xylose isomerase domain-containing protein
YP_005714501.1	PFAM: ABC transporter permease; KEGG: smd:Smed_0914 monosaccharide-transporting ATPase
YP_005714502.1	PFAM: ABC transporter-like; KEGG: smd:Smed_0915 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_005714503.1	KEGG: smd:Smed_0916 putative periplasmic binding ABC transporter protein
YP_005714504.1	KEGG: smd:Smed_0917 regulatory protein LacI; PFAM: HTH transcriptional regulator, LacI; SMART: HTH transcriptional regulator, LacI
YP_005714505.1	KEGG: smd:Smed_2434 hypothetical protein
YP_005714506.1	KEGG: smd:Smed_2435 amidohydrolase; TIGRFAM: Peptidase M20D, amidohydrolase; PFAM: Peptidase M20
YP_005714507.1	PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: smd:Smed_2436 extracellular solute-binding protein
YP_005714508.1	KEGG: smd:Smed_2437 putative beta-lactamase precursor protein
YP_005714509.1	PFAM: ABC transporter-like; Oligopeptide/dipeptide ABC transporter, C-terminal; KEGG: smd:Smed_2438 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_005714510.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_2439 binding-protein-dependent transport systems inner membrane component
YP_005714511.1	KEGG: smd:Smed_2440 binding-protein-dependent transport systems inner membrane component; manually curated; PFAM: Binding-protein-dependent transport systems inner membrane component
YP_005714512.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: smd:Smed_2441 LysR family transcriptional regulator
YP_005714513.1	PFAM: ABC transporter permease; KEGG: smd:Smed_2442 monosaccharide-transporting ATPase
YP_005714514.1	PFAM: ABC transporter-like; KEGG: smd:Smed_2443 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_005714515.1	KEGG: smd:Smed_2444 putative periplasmic binding protein
YP_005714517.1	KEGG: smd:Smed_2445 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR
YP_005714519.1	KEGG: smd:Smed_2457 malate/L-lactate dehydrogenase; PFAM: Malate/L-lactate dehydrogenase
YP_005714520.1	KEGG: smd:Smed_2458 GntR family transcriptional regulator; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: HTH transcriptional regulator, GntR; GntR, C-terminal
YP_005714521.1	KEGG: smd:Smed_2459 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR
YP_005714522.1	KEGG: smd:Smed_2460 glycerol dehydrogenase; PFAM: Alcohol dehydrogenase, iron-type
YP_005714523.1	PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: smd:Smed_2461 short-chain dehydrogenase/reductase SDR
YP_005714524.1	PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: smd:Smed_2462 short chain dehydrogenase; SMART: Polyketide synthase/Fatty acid synthase, KR
YP_005714525.1	PFAM: Glucose-6-phosphate isomerase, prokaryote; manually curated; KEGG: smd:Smed_2463 glucose-6-phosphate isomerase; HAMAP: Glucose-6-phosphate isomerase, subgroup
YP_005714526.1	TIGRFAM: KDPG/KHG aldolase; KEGG: smd:Smed_2464 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; PFAM: KDPG/KHG aldolase
YP_005714527.1	KEGG: smd:Smed_2465 hypothetical protein
YP_005714528.1	KEGG: smd:Smed_2466 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
YP_005714529.1	KEGG: smd:Smed_2467 hypothetical protein; PFAM: Beta-lactamase-like; SMART: Beta-lactamase-like
YP_005714530.1	PFAM: Helix-turn-helix protein RpiR; Sugar isomerase (SIS); KEGG: smd:Smed_2468 RpiR family transcriptional regulator
YP_005714531.1	PFAM: Deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase; TIGRFAM: Deoxyribose-phosphate aldolase; HAMAP: Deoxyribose-phosphate aldolase, type 1; KEGG: smd:Smed_2469 deoxyribose-phosphate aldolase
YP_005714532.1	KEGG: smd:Smed_2470 carbohydrate kinase FGGY; PFAM: Carbohydrate kinase, FGGY, N-terminal; Carbohydrate kinase, FGGY, C-terminal
YP_005714533.1	KEGG: smd:Smed_2471 carbohydrate kinase FGGY; PFAM: Carbohydrate kinase, FGGY, N-terminal; Carbohydrate kinase, FGGY, C-terminal
YP_005714534.1	KEGG: smd:Smed_2472 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR
YP_005714535.1	PFAM: ABC transporter permease; KEGG: smd:Smed_2473 monosaccharide-transporting ATPase
YP_005714536.1	PFAM: ABC transporter-like; KEGG: smd:Smed_2474 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_005714537.1	PFAM: Periplasmic binding protein/LacI transcriptional regulator; KEGG: smd:Smed_2475 monosaccharide-transporting ATPase
YP_005714538.1	KEGG: smd:Smed_2476 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR
YP_005714539.1	KEGG: smd:Smed_2477 GntR family transcriptional regulator; PFAM: UbiC transcription regulator-associated; HTH transcriptional regulator, GntR; SMART: UbiC transcription regulator-associated; HTH transcriptional regulator, GntR
YP_005714540.1	KEGG: smd:Smed_2478 carbohydrate kinase FGGY; PFAM: Carbohydrate kinase, FGGY, N-terminal; Carbohydrate kinase, FGGY, C-terminal
YP_005714541.1	SMART: Transketolase-like, pyrimidine-binding domain; TIGRFAM: Transketolase, bacterial-like; KEGG: smd:Smed_2479 transketolase; PFAM: Transketolase, N-terminal; Transketolase-like, pyrimidine-binding domain; Transketolase, C-terminal
YP_005714542.1	PFAM: Major facilitator superfamily MFS-1; KEGG: rlt:Rleg2_2166 major facilitator superfamily MFS_1
YP_005714543.1	TIGRFAM: ABC transporter, substrate-binding protein, aliphatic sulphonates; KEGG: gur:Gura_3874 aliphatic sulfonate ABC transporter periplasmic ligand-binding protein
YP_005714544.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: gur:Gura_3875 binding-protein-dependent transport systems inner membrane component
YP_005714545.1	PFAM: 4Fe-4S binding domain; KEGG: pjd:Pjdr2_5464 4Fe-4S ferredoxin iron-sulfur binding domain protein
YP_005714546.1	PFAM: FAD dependent oxidoreductase; Fumarate reductase/succinate dehydrogenase flavoprotein, C-terminal; KEGG: scl:sce3038 L-aspartate oxidase (LASPO)
YP_005714547.1	PFAM: Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant; KEGG: nhl:Nhal_2971 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen
YP_005714548.1	PFAM: Globin, truncated bacterial-like; KEGG: smd:Smed_5909 globin
YP_005714549.1	PFAM: Glutamine synthetase, catalytic domain; KEGG: smd:Smed_5349 glutamine synthetase catalytic region
YP_005714550.1	PFAM: Sugar isomerase (SIS); Helix-turn-helix protein RpiR; KEGG: smd:Smed_5348 RpiR family transcriptional regulator
YP_005714551.1	PFAM: N-formylglutamate amidohydrolase; KEGG: smd:Smed_5347 N-formylglutamate amidohydrolase
YP_005714552.1	PFAM: Isochorismatase-like; KEGG: smd:Smed_5346 isochorismatase hydrolase
YP_005714553.1	PFAM: Extracellular ligand-binding receptor; KEGG: smd:Smed_5345 extracellular ligand-binding receptor
YP_005714554.1	PFAM: ABC transporter-like; KEGG: smd:Smed_5344 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_005714555.1	PFAM: ABC transporter-like; KEGG: smd:Smed_5343 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_005714556.1	PFAM: ABC transporter permease; KEGG: smd:Smed_5342 inner-membrane translocator
YP_005714557.1	PFAM: ABC transporter permease; KEGG: smd:Smed_5341 inner-membrane translocator
YP_005714558.1	PFAM: Isochorismatase-like; KEGG: smd:Smed_5340 isochorismatase hydrolase
YP_005714559.1	KEGG: smd:Smed_5339 aminotransferase class-III; PFAM: Aminotransferase class-III
YP_005714560.1	KEGG: smd:Smed_5797 amidohydrolase; PFAM: Amidohydrolase 1
YP_005714561.1	PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: smd:Smed_5796 extracellular solute-binding protein
YP_005714562.1	KEGG: smd:Smed_5790 N-ethylammeline chlorohydrolase; PFAM: Amidohydrolase 1
YP_005714563.1	PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: smd:Smed_5794 extracellular solute-binding protein
YP_005714564.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_5793 binding-protein-dependent transport systems inner membrane component
YP_005714565.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_5792 binding-protein-dependent transport systems inner membrane component
YP_005714566.1	KEGG: smd:Smed_5791 cytosine deaminase; PFAM: Amidohydrolase 3
YP_005714567.1	KEGG: smd:Smed_5790 N-ethylammeline chlorohydrolase; PFAM: Amidohydrolase 1
YP_005714568.1	SMART: ATPase, AAA+ type, core; TIGRFAM: Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal; KEGG: smd:Smed_5789 oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter-like; Oligopeptide/dipeptide ABC transporter, C-terminal
YP_005714569.1	SMART: ATPase, AAA+ type, core; TIGRFAM: Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal; KEGG: smd:Smed_5788 oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter-like; Oligopeptide/dipeptide ABC transporter, C-terminal
YP_005714570.1	KEGG: smd:Smed_5787 GntR family transcriptional regulator; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: GntR, C-terminal; HTH transcriptional regulator, GntR
YP_005714571.1	KEGG: smd:Smed_5786 hypothetical protein; PFAM: Flavin reductase-like, FMN-binding; SMART: Flavin reductase-like, FMN-binding
YP_005714572.1	KEGG: smd:Smed_5785 Asp/Glu racemase; PFAM: Asp/Glu/hydantoin racemase
YP_005714573.1	PFAM: FAD dependent oxidoreductase; Rieske [2Fe-2S] iron-sulphur domain; KEGG: smd:Smed_5894 FAD dependent oxidoreductase
YP_005714574.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: rle:RL3106 LysR family transcriptional regulator
YP_005714575.1	PFAM: Transposase, IS4-like; Transposase InsH, N-terminal; KEGG: rle:pRL70077 putative transposase
YP_005714576.1	KEGG: rle:RL3105 putative hydrolase; PFAM: Beta-lactamase-like; SMART: Beta-lactamase-like
YP_005714577.1	PFAM: Peptidase M23; KEGG: smd:Smed_2498 peptidase M23B
YP_005714578.1	TIGRFAM: Chaperonin ClpB; PFAM: ATPase, AAA-2; ATPase, AAA-type, core; Clp, N-terminal; Clp ATPase, C-terminal; KEGG: smd:Smed_2499 ATPase; SMART: ATPase, AAA+ type, core
YP_005714580.1	KEGG: smd:Smed_2500 hypothetical protein
YP_005714581.1	KEGG: smd:Smed_2501 HemK family modification methylase; TIGRFAM: Protein-(glutamine-N5) methyltransferase, release factor-specific; Modification methylase HemK; PFAM: Methyltransferase small
YP_005714582.1	SMART: Peptide chain release factor; TIGRFAM: Peptide chain release factor 1; KEGG: smd:Smed_2502 peptide chain release factor 1; HAMAP: Peptide chain release factor 1; PFAM: Peptide chain release factor class I/class II; Peptide chain release factor
YP_005714583.1	SMART: GAF; TIGRFAM: Phosphoenolpyruvate-protein phosphotransferase; KEGG: smd:Smed_2503 phosphoenolpyruvate-protein phosphotransferase PtsP; PFAM: PEP-utilising enzyme; Phosphotransferase system, PEP-utilising enzyme, N-terminal; GAF; PEP-utilising enzyme, mobile domain
YP_005714584.1	KEGG: smd:Smed_2504 aspartate kinase; TIGRFAM: Aspartate kinase domain; Aspartate kinase, monofunctional class; PFAM: Aspartate/glutamate/uridylate kinase; Amino acid-binding ACT
YP_005714585.1	PFAM: Bacterial bifunctional deaminase-reductase, C-terminal; KEGG: rhi:NGR_c26600 bifunctional deaminase-reductase-like protein
YP_005714586.1	PFAM: Methyltransferase type 11; TIGRFAM: Ubiquinone biosynthesis O-methyltransferase; HAMAP: Ubiquinone biosynthesis O-methyltransferase; KEGG: smd:Smed_2506 3-demethylubiquinone-9 3-methyltransferase
YP_005714587.1	PFAM: Protein of unknown function DUF1178; KEGG: smd:Smed_2507 hypothetical protein
YP_005714588.1	PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: smd:Smed_2508 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
YP_005714589.1	KEGG: smd:Smed_2509 glutaredoxin 3; TIGRFAM: Glutaredoxin, GrxC; PFAM: Glutaredoxin
YP_005714590.1	PFAM: Phosphoribosyltransferase; KEGG: smd:Smed_2510 phosphoribosyltransferase
YP_005714591.1	KEGG: smd:Smed_2511 hypothetical protein
YP_005714592.1	PFAM: Flp/Fap pilin component; KEGG: smd:Smed_2512 Flp/Fap pilin component
YP_005714593.1	KEGG: rhi:NGR_c26670 hypothetical protein
YP_005714594.1	KEGG: rhi:NGR_c26680 putative mutator protein MutT; TIGRFAM: Mutator MutT; PFAM: NUDIX hydrolase domain
YP_005714595.1	PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: smd:Smed_2515 GCN5-related N-acetyltransferase
YP_005714596.1	PFAM: Arginine biosynthesis protein ArgJ; TIGRFAM: Arginine biosynthesis protein ArgJ; HAMAP: Arginine biosynthesis protein ArgJ; KEGG: smd:Smed_2516 bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein
YP_005714597.1	PFAM: Peptidyl-prolyl cis-trans isomerase, PpiC-type; KEGG: smd:Smed_2517 PpiC-type peptidyl-prolyl cis-trans isomerase
YP_005714598.1	SMART: SecA DEAD-like, N-terminal; SecA preprotein, cross-linking domain; TIGRFAM: SecA protein; KEGG: smd:Smed_2518 preprotein translocase subunit SecA; HAMAP: SecA protein; PFAM: SecA DEAD-like, N-terminal; SecA preprotein, cross-linking domain; SecA Wing/Scaffold; SEC-C motif
YP_005714599.1	KEGG: smd:Smed_2519 Bcr/CflA subfamily drug resistance transporter; TIGRFAM: Drug resistance transporter Bcr/CflA subfamily; PFAM: Major facilitator superfamily MFS-1
YP_005714600.1	PFAM: Polysaccharide biosynthesis protein; KEGG: smd:Smed_2520 polysaccharide biosynthesis protein
YP_005714601.1	KEGG: smd:Smed_2521 hypothetical protein
YP_005714602.1	KEGG: smd:Smed_2522 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase
YP_005714603.1	PFAM: Protein of unknown function DUF1778; KEGG: ppd:Ppro_1355 hypothetical protein
YP_005714604.1	PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: ppd:Ppro_1354 GCN5-related N-acetyltransferase
YP_005714605.1	KEGG: rhi:NGR_c26810 hypothetical protein
YP_005714606.1	KEGG: smd:Smed_2524 HNH endonuclease; PFAM: HNH endonuclease; SMART: HNH nuclease
YP_005714607.1	KEGG: smd:Smed_2525 HhH-GPD family protein; PFAM: HhH-GPD domain; SMART: HhH-GPD domain
YP_005714608.1	PFAM: Glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain; KEGG: smd:Smed_2526 glutamyl-Q tRNA(Asp) synthetase
YP_005714609.1	KEGG: smd:Smed_2527 putative ribonuclease BN; TIGRFAM: Ribonuclease BN; PFAM: Ribonuclease BN-related
YP_005714610.1	PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: smd:Smed_2528 short chain dehydrogenase
YP_005714611.1	KEGG: smd:Smed_2529 hypothetical protein
YP_005714612.1	TIGRFAM: Adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase, PduO-type, N-terminal; KEGG: smd:Smed_2530 ATP--cobalamin adenosyltransferase; PFAM: Adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase, EutT/PduO type
YP_005714613.1	PFAM: Peptidase S54, rhomboid domain; KEGG: smd:Smed_2531 rhomboid family protein
YP_005714614.1	KEGG: smd:Smed_2532 electron transfer flavoprotein alpha/beta-subunit; PFAM: Electron transfer flavoprotein, alpha/beta-subunit, N-terminal; SMART: Electron transfer flavoprotein, alpha/beta-subunit, N-terminal
YP_005714615.1	KEGG: smd:Smed_2533 electron transfer flavoprotein alpha subunit; PFAM: Electron transfer flavoprotein, alpha subunit, C-terminal; Electron transfer flavoprotein, alpha/beta-subunit, N-terminal; SMART: Electron transfer flavoprotein, alpha/beta-subunit, N-terminal
YP_005714616.1	KEGG: smd:Smed_2534 3-hydroxybutyryl-CoA dehydrogenase; PFAM: 3-hydroxyacyl-CoA dehydrogenase, NAD binding; 3-hydroxyacyl-CoA dehydrogenase, C-terminal
YP_005714617.1	PFAM: Redoxin; KEGG: smd:Smed_2535 redoxin domain-containing protein
YP_005714618.1	PFAM: Lyase 1, N-terminal; TIGRFAM: Argininosuccinate lyase; HAMAP: Argininosuccinate lyase; KEGG: rhi:NGR_c26940 argininosuccinate lyase
YP_005714619.1	KEGG: smd:Smed_2537 hypothetical protein
YP_005714620.1	TIGRFAM: Diaminopimelate decarboxylase; KEGG: smd:Smed_2538 diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2, N-terminal; Orn/DAP/Arg decarboxylase 2, C-terminal
YP_005714621.1	TIGRFAM: Conserved hypothetical protein CHP02302, transmembrane; KEGG: smd:Smed_2539 hypothetical protein
YP_005714622.1	PFAM: Transposase, IS4-like; KEGG: rhi:NGR_b15530 putative transposase Y4zB-like protein
YP_005714623.1	KEGG: smd:Smed_2540 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain
YP_005714624.1	TIGRFAM: Hypoxanthine phosphoribosyl transferase; KEGG: smd:Smed_2541 hypoxanthine phosphoribosyltransferase; PFAM: Phosphoribosyltransferase
YP_005714625.1	KEGG: smd:Smed_2542 hypothetical protein
YP_005714626.1	KEGG: smd:Smed_2543 cell division ATP-binding protein FtsE; PFAM: ABC transporter-like; manually curated; TIGRFAM: Cell division ATP-binding protein FtsE; SMART: ATPase, AAA+ type, core
YP_005714627.1	KEGG: smd:Smed_2544 hypothetical protein
YP_005714628.1	PFAM: Domain of unknown function DUF218; KEGG: smd:Smed_2545 hypothetical protein
YP_005714629.1	KEGG: rhi:NGR_c27040 1-acylglycerol-3-phosphate O-acyltransferase; PFAM: Phospholipid/glycerol acyltransferase; SMART: Phospholipid/glycerol acyltransferase
YP_005714630.1	PFAM: ChaC-like protein; KEGG: smd:Smed_2547 ChaC family protein
YP_005714631.1	PFAM: Protein of unknown function DUF2125; KEGG: smd:Smed_2548 hypothetical protein
YP_005714632.1	KEGG: smd:Smed_2549 cyclohexadienyl dehydrogenase; PFAM: Prephenate dehydrogenase
YP_005714633.1	PFAM: Aminotransferase, class I/classII; TIGRFAM: Histidinol-phosphate aminotransferase; HAMAP: Histidinol-phosphate aminotransferase; KEGG: smd:Smed_2550 histidinol-phosphate aminotransferase
YP_005714634.1	PFAM: Methyltransferase type 11; KEGG: smd:Smed_2551 methyltransferase type 11
YP_005714635.1	SMART: Beta-lactamase-like; TIGRFAM: Hydroxyacylglutathione hydrolase; KEGG: smd:Smed_2552 hydroxyacylglutathione hydrolase; HAMAP: Hydroxyacylglutathione hydrolase; PFAM: Beta-lactamase-like
YP_005714636.1	PFAM: Protein of unknown function DUF985; KEGG: smd:Smed_2553 hypothetical protein
YP_005714637.1	PFAM: Drug/metabolite transporter; KEGG: smd:Smed_2554 hypothetical protein
YP_005714638.1	KEGG: smd:Smed_2555 putative signal peptide protein
YP_005714640.1	TIGRFAM: Ribosomal protein L28; HAMAP: Ribosomal protein L28; KEGG: rhi:NGR_c27140 50S ribosomal protein L28; PFAM: Ribosomal protein L28
YP_005714641.1	KEGG: smd:Smed_2557 hypothetical protein; TIGRFAM: Protein of unknown function DUF165; PFAM: Protein of unknown function DUF165
YP_005714642.1	KEGG: smd:Smed_2558 putative signal peptide protein
YP_005714643.1	SMART: von Willebrand factor, type A; TIGRFAM: Cobalt chelatase, CobT subunit; KEGG: smd:Smed_2559 cobalt chelatase, pCobT subunit; PFAM: Cobalt chelatase, CobT subunit
YP_005714644.1	TIGRFAM: Cobalt chelatase, pCobS small subunit; KEGG: rhi:NGR_c27180 aerobic cobaltochelatase, CobS subunit; PFAM: ATPase, AAA-5
YP_005714645.1	KEGG: smd:Smed_2561 heat shock protein DnaJ domain-containing protein; PFAM: Heat shock protein DnaJ, N-terminal; SMART: Heat shock protein DnaJ, N-terminal
YP_005714646.1	PFAM: BolA protein; KEGG: smd:Smed_2562 BolA family protein
YP_005714647.1	PFAM: Domain of unknown function DUF21; Cystathionine beta-synthase, core; Transporter-associated domain; KEGG: smd:Smed_2563 hypothetical protein
YP_005714648.1	PFAM: 3-dehydroquinate synthase AroB; TIGRFAM: 3-dehydroquinate synthase AroB, subgroup; HAMAP: 3-dehydroquinate synthase AroB, subgroup; KEGG: smd:Smed_2564 3-dehydroquinate synthase
YP_005714649.1	HAMAP: Shikimate kinase; KEGG: smd:Smed_2565 shikimate kinase; PFAM: Shikimate kinase
YP_005714650.1	PFAM: Plasmid stabilisation system; KEGG: dat:HRM2_09770 hypothetical protein
YP_005714651.1	KEGG: ara:Arad_1452 CopG/Arc/MetJ DNA-binding domain-containing transcriptional regulator; TIGRFAM: Putative addiction module antidote protein, CC2985; PFAM: Uncharacterised protein family UPF0156/MetJ /Arc repressor
YP_005714652.1	KEGG: smd:Smed_2566 putative signal peptide protein
YP_005714653.1	KEGG: smd:Smed_2567 site-specific tyrosine recombinase XerD; TIGRFAM: Tyrosine recombinase XerD; PFAM: Integrase, catalytic core, phage; Integrase, N-terminal SAM-like, phage
YP_005714654.1	PFAM: Acetyl-CoA carboxylase, alpha subunit; TIGRFAM: Acetyl-CoA carboxylase, alpha subunit; HAMAP: Acetyl-CoA carboxylase, alpha subunit; KEGG: smd:Smed_2568 acetyl-CoA carboxylase carboxyltransferase subunit alpha
YP_005714655.1	PFAM: YkuD domain; KEGG: smd:Smed_2569 hypothetical protein
YP_005714656.1	PFAM: SirA-like; KEGG: smd:Smed_2570 SirA family protein
YP_005714657.1	PFAM: PilT protein, N-terminal; KEGG: rva:Rvan_2480 PilT protein domain protein
YP_005714658.1	KEGG: rva:Rvan_2481 hypothetical protein
YP_005714659.1	KEGG: smd:Smed_2571 cobalamin synthesis protein P47K; PFAM: Cobalamin (vitamin B12) biosynthesis CobW-like; Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal; SMART: Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal
YP_005714660.1	KEGG: smd:Smed_2572 serine-type D-Ala-D-Ala carboxypeptidase; PFAM: Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal
YP_005714661.1	TIGRFAM: Peptidase M20D, amidohydrolase; KEGG: rhi:NGR_c27330 amidohydrolase family protein; PFAM: Peptidase M20; Peptidase M20, dimerisation
YP_005714662.1	KEGG: smd:Smed_2574 AsnC family transcriptional regulator; PFAM: Transcription regulator AsnC-type, C-terminal; SMART: Transcription regulator AsnC-type
YP_005714663.1	PFAM: Alcohol dehydrogenase, C-terminal; Alcohol dehydrogenase GroES-like; KEGG: smd:Smed_2575 alcohol dehydrogenase; SMART: Polyketide synthase, enoylreductase
YP_005714664.1	KEGG: smd:Smed_2576 AraC-like transcriptional regulator; PFAM: HTH transcriptional regulator, AraC, N-terminal; HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain
YP_005714665.1	manually curated; PFAM: Transcription regulator AsnC-type, C-terminal; HTH transcriptional regulator, MarR; KEGG: smd:Smed_2577 AsnC family transcriptional regulator; SMART: Transcription regulator AsnC-type
YP_005714666.1	KEGG: smd:Smed_2578 hypothetical protein; PFAM: Aminotransferase class-III; Aminoglycoside phosphotransferase; Peptidase M23
YP_005714667.1	KEGG: smd:Smed_2579 extracellular solute-binding protein; PFAM: Extracellular solute-binding protein, family 3; SMART: Extracellular solute-binding protein, family 3
YP_005714668.1	KEGG: smd:Smed_2580 hypothetical protein; PFAM: Aminotransferase class-III; Aminoglycoside phosphotransferase
YP_005714669.1	TIGRFAM: Histidine utilization repressor; PFAM: UbiC transcription regulator-associated; HTH transcriptional regulator, GntR; KEGG: smd:Smed_2581 GntR family transcriptional regulator; SMART: UbiC transcription regulator-associated; HTH transcriptional regulator, GntR
YP_005714670.1	KEGG: smd:Smed_2582 N-formimino-L-glutamate deiminase; TIGRFAM: Formiminoglutamate deiminase; PFAM: Amidohydrolase 1
YP_005714671.1	PFAM: ABC-type glycine betaine transport system, substrate-binding domain; KEGG: smd:Smed_2583 substrate-binding region of ABC-type glycine betaine transport system
YP_005714672.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_2584 binding-protein-dependent transport systems inner membrane component
YP_005714673.1	PFAM: ABC transporter-like; KEGG: smd:Smed_2585 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_005714674.1	KEGG: smd:Smed_2586 histidine ammonia-lyase; PFAM: Phenylalanine/histidine ammonia-lyase
YP_005714675.1	PFAM: Nucleoside recognition; KEGG: smd:Smed_2587 nucleoside recognition domain-containing protein
YP_005714676.1	PFAM: Uncharacterised protein family HutD; KEGG: smd:Smed_2588 hypothetical protein
YP_005714677.1	KEGG: smd:Smed_2589 hypothetical protein
YP_005714678.1	KEGG: smd:Smed_2590 hypothetical protein
YP_005714679.1	KEGG: smd:Smed_2591 putative signal peptide protein
YP_005714680.1	KEGG: smd:Smed_2592 hypothetical protein
YP_005714681.1	KEGG: smd:Smed_2593 hypothetical protein
YP_005714682.1	KEGG: smd:Smed_2594 putative signal peptide protein
YP_005714683.1	KEGG: smd:Smed_1378 hypothetical protein
YP_005714684.1	TIGRFAM: tRNA-specific 2-thiouridylase; HAMAP: tRNA-specific 2-thiouridylase; KEGG: smd:Smed_2600 tRNA-specific 2-thiouridylase MnmA; PFAM: tRNA-specific 2-thiouridylase
YP_005714685.1	KEGG: smd:Smed_2601 regulatory protein LuxR; PFAM: Transcription regulator LuxR, C-terminal; Transcription factor LuxR-like, autoinducer-binding domain; SMART: Transcription regulator LuxR, C-terminal
YP_005714686.1	PFAM: Protein of unknown function DUF1153; KEGG: rhi:NGR_c27550 hypothetical protein
YP_005714687.1	KEGG: smd:Smed_2603 hypothetical protein
YP_005714688.1	KEGG: smd:Smed_2604 hypothetical protein
YP_005714689.1	KEGG: smd:Smed_2605 two component transcriptional regulator; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal
YP_005714690.1	KEGG: smd:Smed_2607 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain
YP_005714691.1	PFAM: Protein of unknown function DUF2328; KEGG: smd:Smed_2608 hypothetical protein
YP_005714692.1	PFAM: Uncharacterised conserved protein UCP033924; KEGG: smd:Smed_2609 hypothetical protein
YP_005714693.1	KEGG: smd:Smed_2610 hypothetical protein
YP_005714694.1	PFAM: tRNA/rRNA methyltransferase, SpoU; KEGG: smd:Smed_2611 tRNA/rRNA methyltransferase (SpoU)
YP_005714695.1	KEGG: smd:Smed_2612 hypothetical protein
YP_005714696.1	TIGRFAM: Pseudouridine synthase, RluC/RluD; PFAM: Pseudouridine synthase, RsuA and RluB/C/D/E/F; RNA-binding S4; KEGG: smd:Smed_2613 RluA family pseudouridine synthase; SMART: RNA-binding S4
YP_005714697.1	KEGG: smd:Smed_2614 RNA polymerase factor sigma-32; TIGRFAM: RNA polymerase sigma factor RpoH, proteobacteria; RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma-70 region 4
YP_005714698.1	KEGG: smd:Smed_2615 hypothetical protein
YP_005714699.1	KEGG: smd:Smed_2616 adenylosuccinate synthetase; PFAM: Adenylosuccinate synthetase; TIGRFAM: Adenylosuccinate synthetase; HAMAP: Adenylosuccinate synthetase; SMART: Adenylosuccinate synthetase
YP_005714700.1	PFAM: Drug/metabolite transporter; KEGG: smd:Smed_2617 hypothetical protein
YP_005714701.1	TIGRFAM: D-3-phosphoglycerate dehydrogenase; KEGG: smd:Smed_2618 D-3-phosphoglycerate dehydrogenase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
YP_005714702.1	TIGRFAM: Phosphoserine aminotransferase, Methanosarcina-type; KEGG: smd:Smed_2619 phosphoserine aminotransferase; PFAM: Aminotransferase, class V/Cysteine desulfurase
YP_005714703.1	PFAM: Porin, opacity type; KEGG: smd:Smed_2620 putative heat resistant agglutinin 1 signal peptide protein
YP_005714704.1	PFAM: Porin, opacity type; KEGG: smd:Smed_2621 porin opacity type
YP_005714705.1	TIGRFAM: Phosphoglucosamine mutase; KEGG: smd:Smed_2622 phosphoglucosamine mutase; PFAM: Alpha-D-phosphohexomutase, alpha/beta/alpha domain I; Alpha-D-phosphohexomutase, alpha/beta/alpha domain II; Alpha-D-phosphohexomutase, alpha/beta/alpha domain III; Alpha-D-phosphohexomutase, C-terminal
YP_005714706.1	SMART: ATPase, AAA+ type, core; TIGRFAM: Peptidase M41, FtsH; KEGG: smd:Smed_2623 ATP-dependent metalloprotease FtsH; PFAM: Peptidase M41; ATPase, AAA-type, core; Peptidase M41, FtsH extracellular
YP_005714707.1	TIGRFAM: Lysidine-tRNA(Ile) synthetase, N-terminal; HAMAP: Lysidine-tRNA(Ile) synthetase; KEGG: smd:Smed_2624 tRNA(Ile)-lysidine synthetase; PFAM: tRNA(Ile)-lysidine/2-thiocytidine synthase
YP_005714708.1	TIGRFAM: Tol-Pal system, YbgF; KEGG: smd:Smed_2625 Tol-Pal system YbgF
YP_005714709.1	KEGG: smd:Smed_2626 peptidoglycan-associated lipoprotein; TIGRFAM: Peptidoglycan-associated lipoprotein; PFAM: Outer membrane protein, OmpA/MotB, C-terminal
YP_005714710.1	TIGRFAM: Tol-Pal system beta propeller repeat-containing protein, TolB; HAMAP: Tol-Pal system beta propeller repeat-containing protein, TolB; KEGG: smd:Smed_2627 translocation protein TolB; PFAM: TolB, N-terminal; WD40-like Beta Propeller
YP_005714711.1	KEGG: smd:Smed_2628 putative signal peptide protein
YP_005714712.1	KEGG: smd:Smed_2629 biopolymer transport TolR; TIGRFAM: Biopolymer transport, TolR; PFAM: Biopolymer transport protein ExbD/TolR
YP_005714713.1	KEGG: smd:Smed_2630 Tol-Pal system TolQ; TIGRFAM: Tol-Pal system, TolQ; PFAM: MotA/TolQ/ExbB proton channel
YP_005714714.1	KEGG: smd:Smed_2631 DNA ligase D; TIGRFAM: DNA ligase D; DNA polymerase LigD, ligase domain; DNA ligase D, 3'-phosphoesterase domain; DNA polymerase LigD, polymerase domain; PFAM: DNA ligase, ATP-dependent, central; DNA ligase, ATP-dependent, C-terminal; DNA primase, small subunit
YP_005714715.1	KEGG: smd:Smed_2632 Pol-Pal system-associated acyl-CoA thioesterase; TIGRFAM: Tol-Pal system-associated acyl-CoA thioesterase; 4-hydroxybenzoyl-CoA thioesterase; PFAM: Thioesterase superfamily
YP_005714716.1	KEGG: smd:Smed_2633 NAD-dependent epimerase/dehydratase; PFAM: NAD-dependent epimerase/dehydratase
YP_005714717.1	PFAM: Glycosyl transferase, family 8; KEGG: smd:Smed_2634 glycosyl transferase family protein
YP_005714718.1	PFAM: NAD-dependent epimerase/dehydratase; KEGG: smd:Smed_2635 NAD-dependent epimerase/dehydratase
YP_005714719.1	PFAM: Metallo-dependent phosphatase; KEGG: rhi:NGR_c27900 putative phosphohydrolase
YP_005714720.1	SMART: ATPase, AAA+ type, core; TIGRFAM: DNA helicase, Holliday junction RuvB type; KEGG: smd:Smed_2637 Holliday junction DNA helicase RuvB; HAMAP: DNA helicase, Holliday junction RuvB type; PFAM: DNA helicase, Holliday junction RuvB type, C-terminal; ATPase, AAA-type, core; DNA helicase, Holliday junction RuvB type, N-terminal
YP_005714721.1	TIGRFAM: Bacterial DNA recombination protein RuvA; HAMAP: Bacterial DNA recombination protein RuvA; KEGG: smd:Smed_2638 Holliday junction DNA helicase RuvA; PFAM: DNA helicase, Holliday junction RuvA type, domain I, bacterial; DNA helicase, Holliday junction RuvA type, domain III, C-terminal
YP_005714722.1	PFAM: Crossover junction endodeoxyribonuclease RuvC; TIGRFAM: Crossover junction endodeoxyribonuclease RuvC; HAMAP: Crossover junction endodeoxyribonuclease RuvC; KEGG: rhi:NGR_c27930 Holliday junction resolvase
YP_005714723.1	KEGG: smd:Smed_2640 luciferase family protein; TIGRFAM: Luciferase family oxidoreductase, group 1; PFAM: Luciferase-like, subgroup
YP_005714724.1	TIGRFAM: Protein of unknown function DUF28; HAMAP: Protein of unknown function DUF28; KEGG: smd:Smed_2641 hypothetical protein; PFAM: Protein of unknown function DUF28
YP_005714725.1	KEGG: smd:Smed_2642 hypothetical protein
YP_005714726.1	KEGG: smd:Smed_2643 hydrophobe/amphiphile efflux-1 (HAE1) family protein; TIGRFAM: Hydrophobe/amphiphile efflux-1 HAE1; PFAM: Acriflavin resistance protein
YP_005714727.1	KEGG: smd:Smed_2644 RND family efflux transporter MFP subunit; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD
YP_005714728.1	KEGG: smd:Smed_2645 metallophosphoesterase; TIGRFAM: Conserved hypothetical protein CHP00282; PFAM: Metallo-dependent phosphatase
YP_005714729.1	KEGG: smd:Smed_2646 5-formyltetrahydrofolate cyclo-ligase; TIGRFAM: 5-formyltetrahydrofolate cyclo-ligase; PFAM: 5-formyltetrahydrofolate cyclo-ligase
YP_005714731.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: smd:Smed_2647 LysR family transcriptional regulator
YP_005714732.1	PFAM: Cell division protein ZapA-like; KEGG: smd:Smed_2648 hypothetical protein
YP_005714733.1	KEGG: smd:Smed_2649 hypothetical protein
YP_005714734.1	SMART: Transketolase-like, pyrimidine-binding domain; TIGRFAM: Transketolase, bacterial-like; KEGG: smd:Smed_2650 transketolase; PFAM: Transketolase, N-terminal; Transketolase-like, pyrimidine-binding domain; Transketolase, C-terminal
YP_005714735.1	SMART: Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain; TIGRFAM: Glyceraldehyde-3-phosphate dehydrogenase, type I; KEGG: smd:Smed_2651 glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain; Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain
YP_005714736.1	PFAM: Protein of unknown function DUF1089; KEGG: smd:Smed_2652 hypothetical protein
YP_005714737.1	HAMAP: Phosphoglycerate kinase; KEGG: smd:Smed_2653 phosphoglycerate kinase; PFAM: Phosphoglycerate kinase
YP_005714738.1	KEGG: smd:Smed_2654 fructose-bisphosphate aldolase; PFAM: Fructose-bisphosphate aldolase, class-I
YP_005714739.1	KEGG: smd:Smed_2655 PhzF family phenazine biosynthesis protein; TIGRFAM: Phenazine biosynthesis PhzC/PhzF protein; PFAM: Phenazine biosynthesis PhzC/PhzF protein
YP_005714740.1	PFAM: Adenylyl cyclase class-3/4/guanylyl cyclase; Tetratricopeptide TPR2; Tetratricopeptide TPR-1; KEGG: smd:Smed_2656 adenylyl cyclase class-3/4/guanylyl cyclase; SMART: Adenylyl cyclase class-3/4/guanylyl cyclase; Tetratricopeptide repeat
YP_005714741.1	KEGG: smd:Smed_2657 hypothetical protein
YP_005714742.1	PFAM: Major facilitator superfamily MFS-1; KEGG: smd:Smed_2658 major facilitator transporter
YP_005714743.1	PFAM: Protein of unknown function DUF1192; KEGG: smd:Smed_2659 hypothetical protein
YP_005714744.1	PFAM: Protein of unknown function DUF1465; KEGG: smd:Smed_2660 hypothetical protein
YP_005714745.1	TIGRFAM: Ribosomal protein L31; HAMAP: Ribosomal protein L31; KEGG: smd:Smed_2661 50S ribosomal protein L31; PFAM: Ribosomal protein L31
YP_005714746.1	SMART: ATPase, AAA+ type, core; TIGRFAM: ABC transporter, ATP-binding/permease protein; KEGG: smd:Smed_2662 lipid ABC transporter ATPase/inner membrane protein; PFAM: ABC transporter-like; ABC transporter, transmembrane domain
YP_005714747.1	PFAM: Outer membrane protein, OmpA/MotB, C-terminal; KEGG: smd:Smed_2663 hypothetical protein
YP_005714748.1	KEGG: smd:Smed_2664 hypothetical protein
YP_005714749.1	KEGG: smd:Smed_2665 inositol-phosphate phosphatase; PFAM: Inositol monophosphatase
YP_005714750.1	KEGG: smd:Smed_2666 Sel1 domain-containing protein; PFAM: Sel1-like; SMART: Sel1-like
YP_005714751.1	PFAM: Thiamine monophosphate synthase; KEGG: smd:Smed_2667 thiamine-phosphate pyrophosphorylase
YP_005714752.1	PFAM: Protein of unknown function DUF81; KEGG: smd:Smed_2668 hypothetical protein
YP_005714753.1	KEGG: rhi:NGR_c28270 putative transcriptional regulator, ArsR family; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR
YP_005714754.1	PFAM: Protein of unknown function DUF465; KEGG: smd:Smed_2670 hypothetical protein
YP_005714755.1	PFAM: Protein of unknown function DUF465; KEGG: smd:Smed_2671 hypothetical protein
YP_005714756.1	TIGRFAM: Phosphoribosylaminoimidazole carboxylase, core; KEGG: rhi:NGR_c28300 phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: Phosphoribosylaminoimidazole carboxylase, core
YP_005714757.1	TIGRFAM: Phosphoribosylaminoimidazole carboxylase, ATPase subunit; KEGG: smd:Smed_2673 phosphoribosylaminoimidazole carboxylase ATPase subunit; PFAM: ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type
YP_005714758.1	TIGRFAM: Ribosomal protein L36; HAMAP: Ribosomal protein L36; KEGG: smd:Smed_2674 50S ribosomal protein L36; PFAM: Ribosomal protein L36
YP_005714759.1	PFAM: Tetratricopeptide TPR2; KEGG: smd:Smed_2675 TPR repeat-containing protein
YP_005714760.1	TIGRFAM: Pyruvate kinase; KEGG: smd:Smed_2676 pyruvate kinase; PFAM: Pyruvate kinase, barrel; Pyruvate kinase, C-terminal-like
YP_005714761.1	PFAM: Protein of unknown function DUF1036; KEGG: smd:Smed_2677 hypothetical protein
YP_005714762.1	PFAM: N-formylglutamate amidohydrolase; KEGG: smd:Smed_2678 N-formylglutamate amidohydrolase
YP_005714763.1	PFAM: Protein of unknown function DUF1244; KEGG: smd:Smed_2679 hypothetical protein
YP_005714764.1	KEGG: smd:Smed_2680 hypothetical protein; HAMAP: Uncharacterised protein family UPF0335; PFAM: Uncharacterised protein family UPF0335
YP_005714765.1	PFAM: Protein of unknown function DUF882; KEGG: smd:Smed_2682 hypothetical protein
YP_005714766.1	KEGG: smd:Smed_2683 two component, sigma54 specific, fis family transcriptional regulator; PFAM: RNA polymerase sigma factor 54, interaction; Signal transduction response regulator, receiver domain; Helix-turn-helix, Fis-type; SMART: Signal transduction response regulator, receiver domain; ATPase, AAA+ type, core
YP_005714767.1	KEGG: smd:Smed_2684 PepF/M3 family oligoendopeptidase; TIGRFAM: Peptidase M3B, oligoendopeptidase-related clade 3; PFAM: Peptidase M3A/M3B, thimet/oligopeptidase F; Peptidase M3B, oligopeptidase F, N-terminal
YP_005714768.1	TIGRFAM: Para-aminobenzoate synthase, component I; KEGG: smd:Smed_2685 aminodeoxychorismate synthase; PFAM: Chorismate binding, C-terminal
YP_005714769.1	PFAM: Aminotransferase, class IV; KEGG: smd:Smed_2686 hypothetical protein
YP_005714770.1	TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate cyclase, predicted; KEGG: smd:Smed_2687 diguanylate cyclase; SMART: Diguanylate cyclase, predicted
YP_005714771.1	KEGG: smd:Smed_2688 homospermidine synthase; PFAM: Saccharopine dehydrogenase / Homospermidine synthase
YP_005714772.1	KEGG: smd:Smed_2689 putative outer membrane lipoprotein
YP_005714773.1	PFAM: 5'-Nucleotidase, C-terminal; Metallo-dependent phosphatase; Peptidoglycan-binding lysin domain; KEGG: smd:Smed_2690 5'-nucleotidase domain-containing protein; SMART: Peptidoglycan-binding Lysin subgroup
YP_005714774.1	PFAM: Ferrochelatase; TIGRFAM: Ferrochelatase; HAMAP: Ferrochelatase; KEGG: smd:Smed_2691 ferrochelatase
YP_005714775.1	KEGG: smd:Smed_2704 band 7 protein; PFAM: Band 7 protein; SMART: Band 7 protein
YP_005714776.1	PFAM: Nodulation efficiency, NfeD; KEGG: smd:Smed_2705 hypothetical protein
YP_005714777.1	PFAM: Protein of unknown function DUF2320; KEGG: smd:Smed_2706 hypothetical protein
YP_005714778.1	TIGRFAM: UTP--glucose-1-phosphate uridylyltransferase, bacterial/archaeal type; KEGG: smd:Smed_2707 UTP-glucose-1-phosphate uridylyltransferase; PFAM: Nucleotidyl transferase
YP_005714779.1	KEGG: smd:Smed_2708 lytic murein transglycosylase; TIGRFAM: Lytic murein transglycosylase; Twin-arginine translocation pathway, signal sequence; PFAM: Peptidoglycan binding-like
YP_005714780.1	PFAM: Protein of unknown function DUF459; KEGG: smd:Smed_2709 hypothetical protein
YP_005714781.1	TIGRFAM: Glutamate synthase, NADH/NADPH, small subunit 1; KEGG: smd:Smed_2710 glutamate synthase subunit beta; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase
YP_005714782.1	KEGG: smd:Smed_2711 glutamate synthase (ferredoxin); PFAM: Glutamine amidotransferase, class-II; Glutamate synthase, central-N; Glutamate synthase, central-C; Glutamate synthase, alpha subunit, C-terminal
YP_005714783.1	KEGG: smd:Smed_2712 threonine aldolase; PFAM: Aromatic amino acid beta-eliminating lyase/threonine aldolase
YP_005714784.1	PFAM: Bile acid:sodium symporter; KEGG: smd:Smed_2714 bile acid:sodium symporter
YP_005714785.1	TIGRFAM: Peptidase S33, tricorn interacting factor 1; KEGG: ara:Arad_8444 proline iminopeptidase protein; PFAM: Alpha/beta hydrolase fold-1
YP_005714786.1	KEGG: rec:RHECIAT_PC0000237 probable transcriptional regulator protein, LuxR family; PFAM: Transcription factor LuxR-like, autoinducer-binding domain; Transcription regulator LuxR, C-terminal; SMART: Transcription regulator LuxR, C-terminal
YP_005714787.1	TIGRFAM: Peptidase S33, tricorn interacting factor 1; KEGG: ara:Arad_8441 proline iminopeptidase protein; PFAM: Alpha/beta hydrolase fold-1
YP_005714788.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: rlg:Rleg_6194 binding-protein-dependent transport systems inner membrane component
YP_005714789.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: rlt:Rleg2_6373 binding-protein-dependent transport systems inner membrane component
YP_005714790.1	PFAM: ABC transporter-like; Oligopeptide/dipeptide ABC transporter, C-terminal; KEGG: ara:Arad_8437 oligopeptide ABC transporter; SMART: ATPase, AAA+ type, core
YP_005714791.1	PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: rlg:Rleg_6191 extracellular solute-binding protein family 5
YP_005714792.1	PFAM: Heat shock protein Hsp20; KEGG: smd:Smed_2715 heat shock protein HSP20
YP_005714793.1	manually curated; KEGG: smd:Smed_2716 alpha/beta hydrolase fold; PFAM: Alpha/beta hydrolase, N-terminal
YP_005714794.1	KEGG: smd:Smed_2717 histidinol-phosphate phosphatase, putative; TIGRFAM: Histidinol-phosphate phosphatase, putative, inositol monophosphatase; PFAM: Inositol monophosphatase
YP_005714795.1	PFAM: N-formylglutamate amidohydrolase; KEGG: smd:Smed_2718 N-formylglutamate amidohydrolase
YP_005714796.1	KEGG: smd:Smed_2719 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain
YP_005714797.1	PFAM: Dihydroxy-acid/6-phosphogluconate dehydratase; TIGRFAM: Dihydroxy-acid dehydratase; HAMAP: Dihydroxy-acid dehydratase; KEGG: smd:Smed_2723 dihydroxy-acid dehydratase
YP_005714798.1	PFAM: Glutathione-dependent formaldehyde-activating, GFA; KEGG: smd:Smed_2724 glutathione-dependent formaldehyde-activating GFA
YP_005714799.1	KEGG: smd:Smed_2726 pseudoazurin; TIGRFAM: Pseudoazurin; PFAM: Blue (type 1) copper domain
YP_005714800.1	KEGG: smd:Smed_2727 putative cytochrome c protein
YP_005714801.1	KEGG: smd:Smed_2728 oxidoreductase molybdopterin binding; PFAM: Oxidoreductase, molybdopterin-binding domain; Twin-arginine translocation pathway, signal sequence, bacterial/archaeal; Moybdenum cofactor oxidoreductase, dimerisation
YP_005714802.1	KEGG: smd:Smed_2729 putative transmembrane anti-sigma factor
YP_005714803.1	KEGG: smd:Smed_2730 ECF subfamily RNA polymerase sigma-24 factor; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2
YP_005714804.1	KEGG: smd:Smed_2731 MarR family transcriptional regulator; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR
YP_005714805.1	PFAM: Protein of unknown function DUF1579; KEGG: smd:Smed_2732 hypothetical protein
YP_005714806.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: smd:Smed_2733 glyoxalase/bleomycin resistance protein/dioxygenase
YP_005714807.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: smd:Smed_2734 LysR family transcriptional regulator
YP_005714808.1	KEGG: smd:Smed_2735 aldo/keto reductase; PFAM: NADP-dependent oxidoreductase domain
YP_005714809.1	PFAM: Domain of unknown function DUF404; Domain of unknown function DUF407; Domain of unknown function DUF403; KEGG: smd:Smed_2736 hypothetical protein
YP_005714810.1	KEGG: smd:Smed_2737 transglutaminase domain-containing protein; PFAM: Transglutaminase-like; Bacterial transglutaminase-like, N-terminal; SMART: Transglutaminase-like
YP_005714811.1	KEGG: smd:Smed_2738 von Willebrand factor type A; PFAM: TadE-like; SMART: von Willebrand factor, type A
YP_005714812.1	KEGG: smd:Smed_2739 glycogen/starch/alpha-glucan phosphorylase; TIGRFAM: Glycogen/starch/alpha-glucan phosphorylase; PFAM: Glycosyl transferase, family 35
YP_005714813.1	KEGG: smd:Smed_2740 glycogen branching enzyme; PFAM: Glycoside hydrolase, family 13, N-terminal; Glycosyl hydrolase, family 13, catalytic domain; Alpha-amylase, C-terminal all beta; TIGRFAM: 1,4-alpha-glucan-branching enzyme; HAMAP: 1,4-alpha-glucan-branching enzyme; SMART: Glycosyl hydrolase, family 13, subfamily, catalytic domain
YP_005714814.1	PFAM: Nucleotidyl transferase; TIGRFAM: Glucose-1-phosphate adenylyltransferase; HAMAP: Glucose-1-phosphate adenylyltransferase GlgC, bacterial; KEGG: rhi:NGR_c28960 glucose-1-phosphate adenylyltransferase
YP_005714815.1	PFAM: Starch synthase, catalytic domain; Glycosyl transferase, group 1; TIGRFAM: Glycogen/starch synthases, ADP-glucose type; HAMAP: Glycogen/starch synthases, ADP-glucose type; KEGG: smd:Smed_2742 glycogen synthase
YP_005714816.1	KEGG: smd:Smed_2743 phosphoglucomutase; PFAM: Alpha-D-phosphohexomutase, alpha/beta/alpha domain I; Alpha-D-phosphohexomutase, alpha/beta/alpha domain II; Alpha-D-phosphohexomutase, alpha/beta/alpha domain III; Alpha-D-phosphohexomutase, C-terminal
YP_005714817.1	SMART: Glycosyl hydrolase, family 13, subfamily, catalytic domain; TIGRFAM: Glycogen debranching enzyme; KEGG: smd:Smed_2744 glycogen debranching enzyme GlgX; PFAM: Glycoside hydrolase, family 13, N-terminal; Glycosyl hydrolase, family 13, catalytic domain
YP_005714818.1	PFAM: MaoC-like dehydratase; KEGG: smd:Smed_2745 dehydratase
YP_005714819.1	PFAM: Uncharacterised conserved protein UCP012608; KEGG: smd:Smed_2746 hypothetical protein
YP_005714820.1	KEGG: smd:Smed_2747 alcohol dehydrogenase; PFAM: Alcohol dehydrogenase, C-terminal; Alcohol dehydrogenase GroES-like; SMART: Polyketide synthase, enoylreductase
YP_005714821.1	KEGG: smd:Smed_2749 sarcosine oxidase gamma subunit family protein; TIGRFAM: Sarcosine oxidase, gamma subunit, heterotetrameric; PFAM: Sarcosine oxidase, gamma subunit
YP_005714822.1	KEGG: smd:Smed_2750 sarcosine oxidase alpha subunit family protein; TIGRFAM: Sarcosine oxidase, alpha subunit, heterotetrameric; PFAM: Glycine cleavage T-protein, N-terminal; Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal; Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region; Glycine cleavage T-protein, C-terminal barrel
YP_005714823.1	KEGG: smd:Smed_2751 sarcosine oxidase delta subunit family protein; TIGRFAM: Sarcosine oxidase, delta subunit, heterotetrameric; PFAM: Sarcosine oxidase, delta subunit, heterotetrameric
YP_005714824.1	TIGRFAM: Sarcosine oxidase, beta subunit, heterotetrameric; KEGG: smd:Smed_2752 sarcosine oxidase beta subunit family protein; PFAM: FAD dependent oxidoreductase
YP_005714825.1	TIGRFAM: Ribosomal protein S21; HAMAP: Ribosomal protein S21; KEGG: rlt:Rleg2_3362 30S ribosomal protein S21; PFAM: Ribosomal protein S21
YP_005714826.1	KEGG: smd:Smed_2754 TPR repeat-containing protein; PFAM: Tetratricopeptide TPR-1; SMART: Tetratricopeptide repeat
YP_005714827.1	PFAM: Protein of unknown function DUF992; KEGG: smd:Smed_2755 hypothetical protein
YP_005714828.1	SMART: Adenylyl cyclase class-3/4/guanylyl cyclase; KEGG: smd:Smed_2756 putative adenylate/guanylate cyclase
YP_005714829.1	KEGG: smd:Smed_2757 NAD(P)(+) transhydrogenase (AB-specific); PFAM: NAD(P) transhydrogenase, beta subunit
YP_005714830.1	KEGG: rhi:NGR_b16320 NAD/NADP transhydrogenase
YP_005714831.1	KEGG: smd:Smed_2759 NAD(P) transhydrogenase subunit alpha; PFAM: Alanine dehydrogenase/PNT, C-terminal; Alanine dehydrogenase/PNT, N-terminal
YP_005714832.1	PFAM: Cytochrome c oxidase, subunit IV, bacterial aa3 type; KEGG: smd:Smed_2760 aa3 type cytochrome c oxidase subunit IV
YP_005714833.1	TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; PAS fold; KEGG: rhi:NGR_c29150 putative transmembrane sensory box GGDEF/EAL protein; SMART: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; PAS
YP_005714834.1	KEGG: smd:Smed_2762 peptidase C26; PFAM: Peptidase C26
YP_005714835.1	KEGG: smd:Smed_2763 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
YP_005714836.1	KEGG: smd:Smed_2764 alanine racemase; PFAM: Periplasmic binding protein/LacI transcriptional regulator; SMART: HTH transcriptional regulator, LacI
YP_005714837.1	KEGG: smd:Smed_2765 MarR family transcriptional regulator; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR
YP_005714838.1	PFAM: Creatininase; KEGG: smd:Smed_2766 creatininase
YP_005714839.1	KEGG: smd:Smed_2767 cobalamin synthesis protein P47K; PFAM: Cobalamin (vitamin B12) biosynthesis CobW-like; Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal; SMART: Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal
YP_005714840.1	SMART: WD40 repeat; KEGG: smd:Smed_2768 WD-40 repeat-containing protein
YP_005714841.1	KEGG: smd:Smed_2769 hypothetical protein
YP_005714842.1	PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: smd:Smed_2770 lysine exporter protein LysE/YggA
YP_005714843.1	PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: smd:Smed_2771 GCN5-related N-acetyltransferase
YP_005714844.1	KEGG: smd:Smed_2772 Orn/DAP/Arg decarboxylase 2; PFAM: Orn/DAP/Arg decarboxylase 2, N-terminal; Orn/DAP/Arg decarboxylase 2, C-terminal
YP_005714845.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: smd:Smed_2773 LysR family transcriptional regulator
YP_005714846.1	PFAM: Protein of unknown function DUF1007; KEGG: smd:Smed_2774 hypothetical protein
YP_005714847.1	PFAM: Nickel/cobalt transporter, high-affinity; KEGG: smd:Smed_2775 high-affinity nickel-transporter
YP_005714848.1	PFAM: PilT protein, N-terminal; KEGG: avi:Avi_9882 hypothetical protein
YP_005714849.1	PFAM: Rv0623-like transcription factor; KEGG: avi:Avi_9881 hypothetical protein
YP_005714850.1	KEGG: smd:Smed_2776 hypothetical protein
YP_005714851.1	PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: smd:Smed_2777 GCN5-related N-acetyltransferase
YP_005714852.1	PFAM: Protein of unknown function DUF533; KEGG: smd:Smed_2778 hypothetical protein
YP_005714853.1	TIGRFAM: KDPG/KHG aldolase; KEGG: smd:Smed_2779 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; PFAM: KDPG/KHG aldolase
YP_005714854.1	PFAM: Adenylate cyclase; KEGG: smd:Smed_2780 adenylate cyclase
YP_005714855.1	KEGG: smd:Smed_2781 CHAD domain-containing protein; PFAM: CHAD; SMART: CHAD
YP_005714856.1	HAMAP: Uncharacterised protein family UPF0176; PFAM: Rhodanese-like; KEGG: smd:Smed_2782 rhodanese domain-containing protein; SMART: Rhodanese-like
YP_005714857.1	KEGG: smd:Smed_2783 YaeC family lipoprotein; TIGRFAM: Lipoprotein YaeC; PFAM: NLPA lipoprotein
YP_005714858.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: rhi:NGR_c29420 D-methionine transport system permease protein MetI
YP_005714859.1	PFAM: ABC transporter-like; NIL domain; KEGG: smd:Smed_2785 ABC transporter related; SMART: NIL domain; ATPase, AAA+ type, core
YP_005714860.1	TIGRFAM: Glycoside hydrolase, family 1, beta-glucosidase; KEGG: rhi:NGR_c29440 beta-glucosidase; PFAM: Glycoside hydrolase, family 1
YP_005714861.1	PFAM: Oxidoreductase, N-terminal; Oxidoreductase, C-terminal; KEGG: smd:Smed_2787 oxidoreductase domain-containing protein
YP_005714862.1	PFAM: Xylose isomerase, TIM barrel domain; AP endonuclease, family 2, C-terminal; KEGG: smd:Smed_2788 xylose isomerase domain-containing protein
YP_005714863.1	PFAM: Xylose isomerase, TIM barrel domain; TIGRFAM: Xylose isomerase, bacterial type; HAMAP: Xylose isomerase; KEGG: smd:Smed_2789 xylose isomerase
YP_005714864.1	KEGG: smd:Smed_2791 xylulokinase; TIGRFAM: Xylulokinase; PFAM: Carbohydrate kinase, FGGY, N-terminal; Carbohydrate kinase, FGGY, C-terminal
YP_005714865.1	KEGG: smd:Smed_2792 regulatory protein LacI; PFAM: HTH transcriptional regulator, LacI; SMART: HTH transcriptional regulator, LacI
YP_005714866.1	PFAM: Metallo-dependent phosphatase; KEGG: rhi:NGR_c29510 hypothetical protein
YP_005714867.1	KEGG: smd:Smed_2794 EmrB/QacA family drug resistance transporter; TIGRFAM: Drug resistance transporter EmrB/QacA subfamily; PFAM: Major facilitator superfamily MFS-1
YP_005714868.1	PFAM: Secretion protein HlyD; KEGG: smd:Smed_2795 secretion protein HlyD family protein
YP_005714869.1	PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: smd:Smed_2796 TetR family transcriptional regulator
YP_005714870.1	KEGG: smd:Smed_2797 transcription activator effector binding; PFAM: Bacterial transcription activator, effector binding; HTH transcriptional regulator, AraC; SMART: Bacterial transcription activator, effector binding; Helix-turn-helix, AraC type, DNA binding domain
YP_005714871.1	PFAM: Integral membrane protein TerC; KEGG: smd:Smed_2798 integral membrane protein TerC
YP_005714872.1	TIGRFAM: Glutamyl-tRNA synthetase, class Ic, bacterial/mitochondrial; KEGG: smd:Smed_2799 glutamyl-tRNA synthetase; PFAM: Glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain
YP_005714873.1	PFAM: Aminoacyl-tRNA synthetase, class II (D/K/N); Nucleic acid binding, OB-fold, tRNA/helicase-type; TIGRFAM: Lysyl-tRNA synthetase, class II; HAMAP: Lysyl-tRNA synthetase, class II; KEGG: smd:Smed_2800 lysyl-tRNA synthetase
YP_005714874.1	KEGG: smd:Smed_2801 hypothetical protein
YP_005714875.1	PFAM: Inosine/uridine-preferring nucleoside hydrolase domain; KEGG: smd:Smed_2802 inosine/uridine-preferring nucleoside hydrolase
YP_005714876.1	KEGG: smd:Smed_2803 putative mRNA 3-end processing factor
YP_005714877.1	PFAM: DNA ligase, ATP-dependent, central; DNA ligase, ATP-dependent, C-terminal; KEGG: smd:Smed_2804 ATP-dependent DNA ligase
YP_005714878.1	TIGRFAM: Diguanylate cyclase, predicted; PAS; PFAM: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; CHASE; PAS fold-3; KEGG: smd:Smed_2805 diguanylate cyclase/phosphodiesterase with PAS/PAC and CHASE sensor(s); SMART: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted
YP_005714879.1	TIGRFAM: Monovalent cation/proton antiporter; Monovalent cation:proton antiporter; KEGG: smd:Smed_2806 putative monovalent cation/H+ antiporter subunit A; PFAM: NADH:ubiquinone/plastoquinone oxidoreductase; NADH:ubiquinone oxidoreductase, chain 5/L, N-terminal; Na+/H+ antiporter MnhB subunit-related protein
YP_005714880.1	KEGG: smd:Smed_2807 putative monovalent cation/H+ antiporter subunit C; TIGRFAM: Multicomponent Na+:H+ antiporter; PFAM: NADH-ubiquinone oxidoreductase chain 4L/K
YP_005714881.1	TIGRFAM: MnhD; KEGG: smd:Smed_2808 putative monovalent cation/H+ antiporter subunit D; PFAM: NADH:ubiquinone/plastoquinone oxidoreductase
YP_005714882.1	KEGG: smd:Smed_2809 cation antiporter; TIGRFAM: Monovalent cation Na+:H+ antiporter, MnhE subunit; PFAM: cation antiporter
YP_005714883.1	PFAM: Multiple resistance and pH regulation protein F; KEGG: smd:Smed_2810 putative monovalent cation/H+ antiporter subunit F
YP_005714884.1	KEGG: smd:Smed_2811 monovalent cation/proton antiporter, MnhG/PhaG subunit; TIGRFAM: Na+/H+ antiporter subunit; PFAM: Na+/H+ antiporter subunit
YP_005714885.1	KEGG: ara:Arad_0487 NAD(P)H dehydrogenase (quinone) protein; PFAM: Flavodoxin-like fold
YP_005714886.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: mlo:mlr7815 transcriptional regulator
YP_005714887.1	TIGRFAM: Cobalamin (vitamin B12) biosynthesis CobM/CbiF, precorrin-4 C11-methyltransferase, core; KEGG: smd:Smed_2812 precorrin-4 C11-methyltransferase; PFAM: Tetrapyrrole methylase
YP_005714888.1	PFAM: Tetrapyrrole methylase; manually curated; KEGG: smd:Smed_2813 precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit; TIGRFAM: Cobalamin (vitamin B12) biosynthesis CbiE, precorrin-6Y methyltransferase, core; Cobalamin (vitamin B12) biosynthesis CbiT, precorrin-6Y methyltransferase-core
YP_005714889.1	PFAM: Cobalamin (vitamin B12) biosynthesis CobK/CbiJ, precorrin-6x reductase; manually curated; KEGG: smd:Smed_2814 cobalt-precorrin-6x reductase; TIGRFAM: Cobalamin (vitamin B12) biosynthesis CobK/CbiJ, precorrin-6x reductase
YP_005714890.1	TIGRFAM: Cobalamin (vitamin B12) biosynthesis CobJ/CibH, precorrin-3B C17-methyltransferase, core; KEGG: rhi:NGR_c29780 precorrin-3B C17-methyltransferase; PFAM: Tetrapyrrole methylase
YP_005714891.1	TIGRFAM: Cobalamin (vitamin B12) biosynthesis CobI/CbiL, precorrin-2 C20-methyltransferase, core; KEGG: smd:Smed_2816 precorrin-2 C(20)-methyltransferase; PFAM: Tetrapyrrole methylase
YP_005714892.1	KEGG: smd:Smed_2817 precorrin-8X methylmutase; PFAM: Cobalamin (vitamin B12) biosynthesis CobH/CbiC, precorrin-8X methylmutase, core
YP_005714893.1	PFAM: Nitrite/sulphite reductase, hemoprotein beta-component, ferrodoxin-like; manually curated; KEGG: smd:Smed_2818 precorrin-3B synthase; TIGRFAM: Cobalamin (vitamin B12) biosynthesis CobG-like
YP_005714894.1	TIGRFAM: Cobalamin (vitamin B12) biosynthesis CobF, precorrin-6A synthase; KEGG: smd:Smed_2819 precorrin 6A synthase; PFAM: Tetrapyrrole methylase
YP_005714895.1	TIGRFAM: Uracil-DNA glycosylase; HAMAP: Uracil-DNA glycosylase; KEGG: smd:Smed_2820 uracil-DNA glycosylase; PFAM: Uracil-DNA glycosylase-like
YP_005714896.1	KEGG: smd:Smed_2821 molybdenum ABC transporter, periplasmic molybdate-binding protein; TIGRFAM: Molybdenum ABC transporter, periplasmic binding protein; Twin-arginine translocation pathway, signal sequence; PFAM: Bacterial extracellular solute-binding, family 1
YP_005714897.1	KEGG: smd:Smed_2822 molybdate ABC transporter permease protein; TIGRFAM: Molybdate ABC transporter, permease protein; PFAM: Binding-protein-dependent transport systems inner membrane component
YP_005714898.1	SMART: ATPase, AAA+ type, core; TIGRFAM: Molybdate ABC transporter, ATP-binding protein; KEGG: smd:Smed_2823 molybdate ABC transporter, ATPase subunit; PFAM: ABC transporter-like; Transport-associated OB, type 1
YP_005714899.1	PFAM: HTH transcriptional regulator, LysR; KEGG: smd:Smed_2824 ModE family transcriptional regulator
YP_005714900.1	PFAM: FAD dependent oxidoreductase; KEGG: smd:Smed_2825 FAD dependent oxidoreductase
YP_005714902.1	KEGG: smd:Smed_2826 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring); PFAM: Dehydrogenase, E1 component; 2-oxoisovalerate dehydrogenase, E1 alpha subunit, N-terminal
YP_005714903.1	PFAM: Transketolase-like, pyrimidine-binding domain; Transketolase, C-terminal; KEGG: smd:Smed_2827 transketolase central region; SMART: Transketolase-like, pyrimidine-binding domain
YP_005714904.1	KEGG: rhi:NGR_c29910 branched-chain alpha-keto acid dehydrogenase subunit E2; PFAM: 2-oxoacid dehydrogenase acyltransferase, catalytic domain; Biotin/lipoyl attachment; E3 binding
YP_005714905.1	TIGRFAM: Dihydrolipoamide dehydrogenase; KEGG: smd:Smed_2829 dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation
YP_005714906.1	TIGRFAM: Formyltetrahydrofolate deformylase; KEGG: rhi:NGR_c29940 formyltetrahydrofolate deformylase; PFAM: Formyl transferase, N-terminal; Amino acid-binding ACT
YP_005714907.1	TIGRFAM: Maleylacetoacetate isomerase; KEGG: smd:Smed_2831 maleylacetoacetate isomerase; PFAM: Glutathione S-transferase, N-terminal
YP_005714908.1	PFAM: Fumarylacetoacetase, C-terminal-like; KEGG: smd:Smed_2832 fumarylacetoacetate (FAA) hydrolase
YP_005714909.1	PFAM: Homogentisate 1,2-dioxygenase; TIGRFAM: Homogentisate 1,2-dioxygenase; HAMAP: Homogentisate 1,2-dioxygenase, bacterial; KEGG: smd:Smed_2833 homogentisate 1,2-dioxygenase
YP_005714910.1	KEGG: rhi:NGR_c29990 putative transcriptional regulator, MarR family; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR
YP_005714911.1	KEGG: smd:Smed_2835 AsnC family transcriptional regulator; PFAM: Transcription regulator AsnC-type, C-terminal; SMART: Transcription regulator AsnC-type
YP_005714912.1	TIGRFAM: 4-hydroxyphenylpyruvate dioxygenase; KEGG: smd:Smed_2836 4-hydroxyphenylpyruvate dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase
YP_005714913.1	KEGG: smd:Smed_2837 response regulator receiver protein; PFAM: Transcription regulator LuxR, C-terminal; SMART: Transcription regulator LuxR, C-terminal
YP_005714914.1	KEGG: smd:Smed_2838 hypothetical protein
YP_005714915.1	KEGG: atu:Atu3321 hypothetical protein
YP_005714916.1	SMART: ATPase, AAA+ type, core; TIGRFAM: ATPase, type I secretion system, PrtD; KEGG: rle:RL0072 putative ATP-binding component of ABC transporter; PFAM: ABC transporter-like
YP_005714917.1	KEGG: rlt:Rleg2_3995 type I secretion membrane fusion protein, HlyD family; TIGRFAM: Type I secretion membrane fusion protein, HlyD; PFAM: Secretion protein HlyD
YP_005714918.1	KEGG: smd:Smed_2839 hypothetical protein
YP_005714919.1	KEGG: smd:Smed_2840 tetratricopeptide TPR_4
YP_005714920.1	KEGG: smd:Smed_2841 hypothetical protein
YP_005714921.1	TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; KEGG: smd:Smed_2842 diguanylate cyclase/phosphodiesterase; SMART: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted
YP_005714922.1	KEGG: smd:Smed_2843 GntR family transcriptional regulator; PFAM: UbiC transcription regulator-associated; HTH transcriptional regulator, GntR; SMART: UbiC transcription regulator-associated; HTH transcriptional regulator, GntR
YP_005714923.1	PFAM: Sugar isomerase (SIS); KEGG: smd:Smed_2844 sugar isomerase (SIS)
YP_005714924.1	PFAM: Carbohydrate/purine kinase; KEGG: smd:Smed_2845 ribokinase-like domain-containing protein
YP_005714925.1	KEGG: aba:Acid345_4435 hypothetical protein
YP_005714926.1	KEGG: aba:Acid345_4434 prevent-host-death protein; TIGRFAM: Prevent-host-death protein; PFAM: Prevent-host-death protein
YP_005714927.1	PFAM: ABC transporter-like; KEGG: smd:Smed_2846 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_005714928.1	PFAM: Drug/metabolite transporter; KEGG: smd:Smed_2847 hypothetical protein
YP_005714929.1	KEGG: smd:Smed_2848 polar amino acid ABC transporter, inner membrane subunit; TIGRFAM: Amino acid ABC transporter, permease protein, 3-TM domain, His/Glu/Gln/Arg/opine family; PFAM: Binding-protein-dependent transport systems inner membrane component
YP_005714930.1	PFAM: FAD dependent oxidoreductase; KEGG: smd:Smed_2849 FAD dependent oxidoreductase
YP_005714931.1	KEGG: smd:Smed_2850 extracellular solute-binding protein; PFAM: Extracellular solute-binding protein, family 3; SMART: Extracellular solute-binding protein, family 3
YP_005714932.1	PFAM: Xylose isomerase, TIM barrel domain; KEGG: smd:Smed_2851 xylose isomerase domain-containing protein
YP_005714933.1	PFAM: Glycerophosphoryl diester phosphodiesterase; KEGG: smd:Smed_2852 glycerophosphoryl diester phosphodiesterase
YP_005714934.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_2853 binding-protein-dependent transport systems inner membrane component
YP_005714935.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_2854 binding-protein-dependent transport systems inner membrane component
YP_005714936.1	SMART: ATPase, AAA+ type, core; TIGRFAM: Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal; KEGG: smd:Smed_2855 oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter-like; Oligopeptide/dipeptide ABC transporter, C-terminal
YP_005714937.1	SMART: ATPase, AAA+ type, core; TIGRFAM: Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal; KEGG: smd:Smed_2856 oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter-like; Oligopeptide/dipeptide ABC transporter, C-terminal
YP_005714938.1	PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: smd:Smed_2857 extracellular solute-binding protein
YP_005714939.1	PFAM: Sugar-binding domain, putative; KEGG: smd:Smed_2858 DeoR family transcriptional regulator
YP_005714940.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: smd:Smed_2863 LysR family transcriptional regulator
YP_005714941.1	KEGG: smd:Smed_2864 putative periplasmic binding ABC transporter protein
YP_005714942.1	SMART: ATPase, AAA+ type, core; manually curated; KEGG: rhi:NGR_c30590 putative ATP-binding component of ABC transporter; PFAM: ABC transporter-like
YP_005714943.1	KEGG: smd:Smed_2866 ABC transporter related; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core
YP_005714944.1	PFAM: ABC transporter permease; KEGG: smd:Smed_2867 inner-membrane translocator
YP_005714945.1	PFAM: ABC transporter permease; KEGG: smd:Smed_2868 inner-membrane translocator
YP_005714946.1	KEGG: smd:Smed_2869 glucose-methanol-choline oxidoreductase; PFAM: Glucose-methanol-choline oxidoreductase, N-terminal; Glucose-methanol-choline oxidoreductase, C-terminal
YP_005714947.1	PFAM: Transposase, mutator type; KEGG: sjp:SJA_P2-00250 putative transposase
YP_005714948.1	TIGRFAM: 5-methyltetrahydrofolate--homocysteine methyltransferase; KEGG: smd:Smed_2870 B12-dependent methionine synthase; PFAM: Homocysteine S-methyltransferase; Pterin-binding; Methionine synthase, cobalamin (vitamin B12)-binding module, cap; Cobalamin (vitamin B12)-binding; Vitamin B12-dependent methionine synthase, activation domain
YP_005714949.1	KEGG: smd:Smed_2871 mannose-6-phosphate isomerase; PFAM: N-acylglucosamine 2-epimerase
YP_005714950.1	KEGG: smd:Smed_2872 hypothetical protein; HAMAP: Uncharacterised protein family UPF0303; PFAM: Domain of unknown function DUF336
YP_005714951.1	PFAM: ROK; KEGG: smd:Smed_2873 ROK family protein
YP_005714952.1	PFAM: Haemolysin-type calcium-binding repeat; KEGG: smd:Smed_5060 hemolysin-type calcium-binding region
YP_005714953.1	KEGG: rhi:NGR_c11550 hypothetical protein
YP_005714954.1	KEGG: bcj:BCAM0938 GNAT family acetyltransferase
YP_005714955.1	PFAM: Protein of unknown function DUF2091, periplasmic; Domain of unknown function DUF306, Meta/HslJ; KEGG: smd:Smed_2878 protein of unknown function DUF306 MetA and HslJ
YP_005714956.1	PFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase, N-terminal; 1-deoxy-D-xylulose 5-phosphate reductoisomerase, C-terminal; TIGRFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; HAMAP: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; KEGG: smd:Smed_2879 1-deoxy-D-xylulose 5-phosphate reductoisomerase
YP_005714957.1	TIGRFAM: Tetrapyrrole biosynthesis, 5-aminolevulinic acid synthase; KEGG: smd:Smed_2880 5-aminolevulinate synthase; PFAM: Aminotransferase, class I/classII
YP_005714958.1	KEGG: smd:Smed_2881 carbon-monoxide dehydrogenase (acceptor); PFAM: Molybdopterin dehydrogenase, FAD-binding
YP_005714959.1	KEGG: smd:Smed_2882 aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; PFAM: Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding; Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead
YP_005714960.1	KEGG: smd:Smed_2883 2Fe-2S iron-sulfur cluster binding domain-containing protein; PFAM: [2Fe-2S]-binding; Ferredoxin
YP_005714961.1	PFAM: Rickettsia 17kDa surface antigen; KEGG: smd:Smed_2884 17 kDa surface antigen
YP_005714962.1	KEGG: smd:Smed_2885 adenylyl cyclase class-3/4/guanylyl cyclase; PFAM: Adenylyl cyclase class-3/4/guanylyl cyclase
YP_005714963.1	PFAM: Alpha/beta hydrolase fold-1; KEGG: smd:Smed_2886 alpha/beta hydrolase fold
YP_005714964.1	PFAM: Bacterial surface antigen (D15); Surface antigen variable number; KEGG: smd:Smed_2887 surface antigen (D15)
YP_005714965.1	PFAM: Protein of unknown function DUF490; KEGG: smd:Smed_2888 hypothetical protein
YP_005714967.1	PFAM: Aminoglycoside phosphotransferase; KEGG: mlo:mlr2696 kanamycin resistance protein
YP_005714968.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: smd:Smed_2889 glyoxalase/bleomycin resistance protein/dioxygenase
YP_005714969.1	KEGG: smd:Smed_2890 AsnC family transcriptional regulator; PFAM: Transcription regulator AsnC-type, C-terminal; SMART: Transcription regulator AsnC-type
YP_005714970.1	TIGRFAM: Arginase, subgroup; KEGG: smd:Smed_2891 arginase; PFAM: Ureohydrolase
YP_005714971.1	KEGG: rhi:NGR_c30840 chemotaxis protein, CheW family; PFAM: CheW-like protein; SMART: CheW-like protein
YP_005714972.1	TIGRFAM: PAS; PFAM: Chemotaxis methyl-accepting receptor, signalling; PAS fold-3; KEGG: smd:Smed_2893 methyl-accepting chemotaxis sensory transducer; SMART: Chemotaxis methyl-accepting receptor, signalling; PAS; PAC motif
YP_005714973.1	KEGG: smd:Smed_2895 putative NAD-dependent formate dehydrogenase delta subunit protein
YP_005714974.1	TIGRFAM: Formate dehydrogenase, subunit FdhD; HAMAP: Formate dehydrogenase, subunit FdhD; KEGG: smd:Smed_2896 formate dehydrogenase accessory protein; PFAM: Formate dehydrogenase, subunit FdhD
YP_005714975.1	TIGRFAM: Formate dehydrogenase, alpha subunit; PFAM: Molybdopterin oxidoreductase; Molybdopterin oxidoreductase, Fe4S4 domain; NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding; Ferredoxin; 4Fe-4S binding domain; Molydopterin dinucleotide-binding domain; KEGG: smd:Smed_2897 formate dehydrogenase, alpha subunit; SMART: NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding; Molybdopterin oxidoreductase, Fe4S4 domain
YP_005714977.1	PFAM: NADH:ubiquinone oxidoreductase, 51kDa subunit; Soluble ligand binding domain; NADH ubiquinone oxidoreductase, F subunit, iron sulphur binding; KEGG: smd:Smed_2898 NADH dehydrogenase (quinone); SMART: NADH ubiquinone oxidoreductase, F subunit, iron sulphur binding
YP_005714978.1	PFAM: NADH:ubiquinone oxidoreductase, 24kDa subunit; KEGG: smd:Smed_2899 formate dehydrogenase subunit gamma
YP_005714979.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: smd:Smed_2900 LysR family transcriptional regulator
YP_005714980.1	PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: smd:Smed_2901 short-chain dehydrogenase/reductase SDR; SMART: Polyketide synthase/Fatty acid synthase, KR
YP_005714981.1	KEGG: smd:Smed_2902 DeoR family transcriptional regulator; PFAM: HTH transcriptional regulator, DeoR; HTH transcriptional regulator, DeoR N-terminal; SMART: HTH transcriptional regulator, DeoR N-terminal
YP_005714982.1	KEGG: smd:Smed_2903 glycerol-3-phosphate dehydrogenase; PFAM: FAD dependent oxidoreductase
YP_005714983.1	PFAM: ABC transporter-like; KEGG: smd:Smed_2904 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_005714984.1	PFAM: ABC transporter-like; KEGG: smd:Smed_2905 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_005714985.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_2906 binding-protein-dependent transport systems inner membrane component
YP_005714986.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: rhi:NGR_c30980 putative permease component of ABC transporter
YP_005714987.1	PFAM: Protein of unknown function DUF2160, transmembrane; KEGG: smd:Smed_2908 hypothetical protein
YP_005714988.1	PFAM: Bacterial extracellular solute-binding, family 1; KEGG: smd:Smed_2909 extracellular solute-binding protein
YP_005714989.1	KEGG: pap:PSPA7_2224 putative transporter; TIGRFAM: Xanthine permease; Xanthine/uracil permease; PFAM: Xanthine/uracil/vitamin C permease
YP_005714990.1	KEGG: smd:Smed_2911 uracil-xanthine permease; TIGRFAM: Xanthine permease; Xanthine/uracil permease; PFAM: Xanthine/uracil/vitamin C permease
YP_005714991.1	PFAM: Drug/metabolite transporter; KEGG: smd:Smed_2912 hypothetical protein
YP_005714992.1	PFAM: Ferric-uptake regulator; KEGG: smd:Smed_2913 ferric uptake regulator family protein
YP_005714993.1	PFAM: ABC transporter metal-binding lipoprotein; KEGG: smd:Smed_2914 periplasmic solute binding protein
YP_005714994.1	PFAM: ABC transporter-like; KEGG: smd:Smed_2915 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_005714995.1	PFAM: ABC-3; KEGG: smd:Smed_2916 ABC-3 protein
YP_005714996.1	PFAM: ABC-3; KEGG: smd:Smed_2917 ABC-3 protein
YP_005714997.1	KEGG: smd:Smed_2918 hypothetical protein
YP_005714998.1	KEGG: smd:Smed_2919 AsnC family transcriptional regulator; PFAM: Transcription regulator AsnC-type, C-terminal; Helix-turn-helix, type 11; SMART: Transcription regulator AsnC-type
YP_005714999.1	PFAM: Saccharopine dehydrogenase / Homospermidine synthase; KEGG: smd:Smed_2920 saccharopine dehydrogenase
YP_005715000.1	TIGRFAM: ATPase, F1 complex, delta/epsilon subunit; HAMAP: ATPase, F1 complex, delta/epsilon subunit; KEGG: smd:Smed_2921 F0F1 ATP synthase subunit epsilon; PFAM: ATPase, F1 complex, delta/epsilon subunit, N-terminal
YP_005715001.1	SMART: ATPase, AAA+ type, core; TIGRFAM: ATPase, F1 complex, beta subunit; KEGG: smd:Smed_2922 F0F1 ATP synthase subunit beta; HAMAP: ATPase, F1 complex, beta subunit; PFAM: ATPase, alpha/beta subunit, nucleotide-binding domain; ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal; ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal
YP_005715002.1	TIGRFAM: ATPase, F1 complex, gamma subunit; HAMAP: ATPase, F1 complex, gamma subunit; KEGG: smd:Smed_2923 F0F1 ATP synthase subunit gamma; PFAM: ATPase, F1 complex, gamma subunit
YP_005715003.1	TIGRFAM: ATPase, F1 complex, alpha subunit; HAMAP: ATPase, F1 complex, alpha subunit; KEGG: rhi:NGR_c31130 F0F1 ATP synthase subunit alpha; PFAM: ATPase, alpha/beta subunit, nucleotide-binding domain; ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal; ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal
YP_005715004.1	TIGRFAM: ATPase, F1 complex, OSCP/delta subunit; HAMAP: ATPase, F1 complex, OSCP/delta subunit; KEGG: smd:Smed_2925 F0F1 ATP synthase subunit delta; PFAM: ATPase, F1 complex, OSCP/delta subunit
YP_005715005.1	KEGG: smd:Smed_2926 hypothetical protein
YP_005715006.1	TIGRFAM: Primosomal protein n; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Helicase, C-terminal; KEGG: smd:Smed_2927 primosome assembly protein PriA; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal
YP_005715007.1	TIGRFAM: Transaldolase 3A/3B; HAMAP: Transaldolase 3B, putative; KEGG: smd:Smed_2928 putative translaldolase; PFAM: Transaldolase
YP_005715008.1	PFAM: Alpha/beta hydrolase fold-1; KEGG: smd:Smed_2929 hypothetical protein
YP_005715009.1	KEGG: dsh:Dshi_1060 hypothetical protein
YP_005715010.1	KEGG: smd:Smed_2930 hypothetical protein
YP_005715011.1	KEGG: smd:Smed_2931 hypothetical protein
YP_005715012.1	KEGG: smd:Smed_2932 phospholipid/glycerol acyltransferase; PFAM: Phospholipid/glycerol acyltransferase; SMART: Phospholipid/glycerol acyltransferase
YP_005715013.1	PFAM: Integrase, catalytic core, phage; Integrase, N-terminal SAM-like, phage; KEGG: smd:Smed_2933 site-specific tyrosine recombinase XerC
YP_005715014.1	PFAM: GumN predicted; KEGG: smd:Smed_2934 GumN family protein
YP_005715015.1	TIGRFAM: Dihydrolipoamide dehydrogenase; KEGG: smd:Smed_2936 dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation
YP_005715016.1	KEGG: smd:Smed_2937 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR
YP_005715017.1	KEGG: smd:Smed_2938 putative signal peptide protein
YP_005715018.1	PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: smd:Smed_2939 lysine exporter protein LysE/YggA
YP_005715019.1	TIGRFAM: Dihydrolipoamide succinyltransferase; KEGG: smd:Smed_2940 dihydrolipoamide succinyltransferase; PFAM: 2-oxoacid dehydrogenase acyltransferase, catalytic domain; Biotin/lipoyl attachment; E3 binding
YP_005715020.1	SMART: Transketolase-like, pyrimidine-binding domain; TIGRFAM: 2-oxoglutarate dehydrogenase, E1 component; KEGG: smd:Smed_2941 2-oxoglutarate dehydrogenase E1 component; PFAM: Transketolase-like, pyrimidine-binding domain; Dehydrogenase, E1 component
YP_005715021.1	SMART: CoA-binding; TIGRFAM: Succinyl-CoA ligase, alpha subunit; KEGG: smd:Smed_2942 succinyl-CoA synthetase subunit alpha; PFAM: ATP-citrate lyase/succinyl-CoA ligase; CoA-binding
YP_005715022.1	PFAM: ATP-grasp fold, succinyl-CoA synthetase-type; ATP-citrate lyase/succinyl-CoA ligase; TIGRFAM: Succinyl-CoA synthetase, beta subunit; HAMAP: Succinyl-CoA synthetase, beta subunit; KEGG: smd:Smed_2943 succinyl-CoA synthetase subunit beta
YP_005715023.1	TIGRFAM: Malate dehydrogenase, NAD-dependent; HAMAP: Malate dehydrogenase, NAD-dependent; KEGG: smd:Smed_2944 malate dehydrogenase; PFAM: Lactate/malate dehydrogenase, N-terminal; Lactate/malate dehydrogenase, C-terminal
YP_005715024.1	PFAM: ATPase, AFG1-like; KEGG: smd:Smed_2945 AFG1 family ATPase
YP_005715025.1	TIGRFAM: Addiction module antidote protein, HigA; PFAM: Helix-turn-helix type 3; KEGG: jde:Jden_0768 plasmid maintenance system antidote protein, XRE family; SMART: Helix-turn-helix type 3
YP_005715026.1	KEGG: syn:ssr5020 hypothetical protein; manually curated; PFAM: Plasmid maintenance system killer
YP_005715027.1	KEGG: smd:Smed_2946 outer membrane lipoprotein omp19
YP_005715028.1	PFAM: ABC transporter-like; Transport-associated OB, type 1; KEGG: smd:Smed_2947 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_005715029.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_2948 binding-protein-dependent transport systems inner membrane component
YP_005715030.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_2949 binding-protein-dependent transport systems inner membrane component
YP_005715031.1	PFAM: Bacterial extracellular solute-binding, family 1; KEGG: smd:Smed_2950 extracellular solute-binding protein
YP_005715032.1	PFAM: ROK; HTH transcriptional regulator, MarR; KEGG: smd:Smed_2951 ROK family protein
YP_005715033.1	PFAM: Oxidoreductase, N-terminal; KEGG: smd:Smed_2952 oxidoreductase domain-containing protein
YP_005715034.1	KEGG: smd:Smed_2953 hypothetical protein
YP_005715035.1	PFAM: Peptide methionine sulphoxide reductase MsrA; TIGRFAM: Peptide methionine sulphoxide reductase MsrA; HAMAP: Peptide methionine sulphoxide reductase MsrA; KEGG: smd:Smed_2955 peptide methionine sulfoxide reductase
YP_005715036.1	KEGG: smd:Smed_2956 succinate dehydrogenase iron-sulfur subunit; TIGRFAM: Succinate dehydrogenase/fumarate reductase iron-sulphur protein
YP_005715037.1	TIGRFAM: Succinate dehydrogenase, flavoprotein subunit; Succinate dehydrogenase/fumarate reductase, flavoprotein subunit; KEGG: smd:Smed_2957 succinate dehydrogenase flavoprotein subunit; PFAM: Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal; Fumarate reductase/succinate dehydrogenase flavoprotein, C-terminal
YP_005715038.1	KEGG: smd:Smed_2958 succinate dehydrogenase hydrophobic membrane anchor; TIGRFAM: Succinate dehydrogenase, hydrophobic membrane anchor; PFAM: Succinate dehydrogenase/Fumarate reductase, transmembrane subunit
YP_005715039.1	KEGG: smd:Smed_2959 succinate dehydrogenase cytochrome b556 subunit; TIGRFAM: Succinate dehydrogenase, cytochrome b556 subunit; PFAM: Succinate dehydrogenase/Fumarate reductase, transmembrane subunit
YP_005715040.1	KEGG: smd:Smed_2960 hypothetical protein
YP_005715041.1	KEGG: smd:Smed_2961 hypothetical protein; manually curated; PFAM: Ribosomal L11 methyltransferase, PrmA
YP_005715042.1	PFAM: Protein of unknown function DUF55; KEGG: rhi:NGR_c32150 hypothetical protein
YP_005715043.1	PFAM: YCII-related; KEGG: smd:Smed_2963 YciI-like protein
YP_005715044.1	KEGG: smd:Smed_2964 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; HAMAP: Glycerol-3-phosphate dehydrogenase, NAD-dependent; PFAM: Glycerol-3-phosphate dehydrogenase, NAD-dependent, C-terminal; Glycerol-3-phosphate dehydrogenase, NAD-dependent, N-terminal
YP_005715045.1	PFAM: Peptidase M22, glycoprotease; TIGRFAM: Peptidase M22, O-sialoglycoprotein peptidase; Peptidase M22, glycoprotease, subgroup; HAMAP: Peptidase M22, O-sialoglycoprotein peptidase; KEGG: rhi:NGR_c32120 putative DNA-binding/iron metalloprotein/AP endonuclease
YP_005715046.1	TIGRFAM: Tetrapyrrole biosynthesis, hydroxymethylbilane synthase; HAMAP: Tetrapyrrole biosynthesis, hydroxymethylbilane synthase; KEGG: smd:Smed_2966 porphobilinogen deaminase; PFAM: Porphobilinogen deaminase, N-terminal; Porphobilinogen deaminase, C-terminal domain
YP_005715047.1	PFAM: Tetrapyrrole biosynthesis, uroporphyrinogen III synthase; KEGG: smd:Smed_2967 uroporphyrinogen-III synthase
YP_005715048.1	KEGG: smd:Smed_2968 hypothetical protein
YP_005715049.1	PFAM: HemY, N-terminal; KEGG: smd:Smed_2969 HemY domain-containing protein
YP_005715050.1	KEGG: smd:Smed_2970 hypothetical protein
YP_005715051.1	PFAM: Glutamine amidotransferase class-I, C-terminal; KEGG: smd:Smed_2971 glutamine amidotransferase
YP_005715053.1	PFAM: Major facilitator superfamily MFS-1; KEGG: smd:Smed_2972 major facilitator transporter
YP_005715054.1	PFAM: Uncharacterised protein family Ycf19; KEGG: smd:Smed_2973 protein of unknown function YGGT
YP_005715055.1	HAMAP: Inorganic pyrophosphatase; KEGG: smd:Smed_2974 inorganic pyrophosphatase; PFAM: Inorganic pyrophosphatase
YP_005715056.1	KEGG: mes:Meso_3231 hypothetical protein
YP_005715057.1	PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: smd:Smed_2975 GCN5-related N-acetyltransferase
YP_005715058.1	TIGRFAM: GTP-binding protein TypA; Small GTP-binding protein; PFAM: Protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, domain 2; Translation elongation factor EFG/EF2, C-terminal; KEGG: smd:Smed_2976 GTP-binding protein TypA; SMART: Translation elongation factor EFG/EF2, C-terminal
YP_005715059.1	PFAM: Alkaline phosphatase D-related; KEGG: smd:Smed_2977 alkaline phosphatase
YP_005715060.1	KEGG: sti:Sthe_3473 hypothetical protein
YP_005715061.1	PFAM: Amidase; KEGG: smd:Smed_2984 amidase
YP_005715062.1	KEGG: smd:Smed_2985 hypothetical protein
YP_005715063.1	KEGG: smd:Smed_2986 hypothetical protein
YP_005715064.1	KEGG: rle:RL1103 hypothetical protein
YP_005715065.1	TIGRFAM: Ribosomal protein L21; HAMAP: Ribosomal protein L21; KEGG: rhi:NGR_c31660 50S ribosomal protein L21; PFAM: Ribosomal protein L21
YP_005715066.1	TIGRFAM: Ribosomal protein L27; HAMAP: Ribosomal protein L27; KEGG: rhi:NGR_c31670 50S ribosomal protein L27; PFAM: Ribosomal protein L27
YP_005715067.1	PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: rhi:NGR_c31680 acetyltransferase
YP_005715068.1	PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: smd:Smed_3008 GCN5-related N-acetyltransferase
YP_005715069.1	TIGRFAM: GTP-binding protein Obg/CgtA; Small GTP-binding protein; HAMAP: GTP-binding protein Obg/CgtA; KEGG: smd:Smed_3009 GTPase ObgE; PFAM: GTP1/OBG subdomain; GTP-binding protein, HSR1-related
YP_005715070.1	SMART: Pseudouridine synthase/archaeosine transglycosylase; TIGRFAM: Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase; KEGG: smd:Smed_3010 gamma-glutamyl kinase; HAMAP: Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase; PFAM: Aspartate/glutamate/uridylate kinase; Pseudouridine synthase/archaeosine transglycosylase
YP_005715071.1	TIGRFAM: Gamma-glutamyl phosphate reductase GPR; HAMAP: Glutamate-5-semialdehyde dehydrogenase; KEGG: smd:Smed_3011 gamma-glutamyl phosphate reductase
YP_005715072.1	PFAM: Cytidylyltransferase; TIGRFAM: Probable nicotinate-nucleotide adenylyltransferase; HAMAP: Probable nicotinate-nucleotide adenylyltransferase; KEGG: smd:Smed_3012 nicotinic acid mononucleotide adenylyltransferase
YP_005715073.1	KEGG: smd:Smed_3013 iojap-like protein; TIGRFAM: Ribosome-associated, Iojap-like; PFAM: Ribosome-associated, Iojap-like
YP_005715074.1	KEGG: smd:Smed_3014 rRNA large subunit methyltransferase; HAMAP: SPOUT methyltransferase, predicted; PFAM: SPOUT methyltransferase, predicted
YP_005715075.1	PFAM: Peptidase M23; KEGG: smd:Smed_3015 peptidase M23B
YP_005715076.1	TIGRFAM: Peptidase S41A, C-terminal peptidase; PFAM: Peptidase S41; PDZ/DHR/GLGF; KEGG: smd:Smed_3016 carboxyl-terminal protease; SMART: Peptidase S41; PDZ/DHR/GLGF
YP_005715077.1	PFAM: Protein of unknown function DUF610, YibQ; KEGG: smd:Smed_3017 protein of unknown function DUF610 YibQ
YP_005715078.1	KEGG: smd:Smed_3018 dinucleoside polyphosphate hydrolase; HAMAP: RNA pyrophosphohydrolase RppH; PFAM: NUDIX hydrolase domain
YP_005715079.1	KEGG: smd:Smed_3019 bacterioferritin; TIGRFAM: Bacterioferritin; PFAM: Ferritin/Dps protein
YP_005715080.1	KEGG: smd:Smed_3020 hypothetical protein
YP_005715081.1	KEGG: smd:Smed_3021 DNA polymerase III, alpha subunit; PFAM: Bacterial DNA polymerase III, alpha subunit; PHP, C-terminal; Nucleic acid binding, OB-fold, tRNA/helicase-type; TIGRFAM: DNA polymerase III, alpha subunit; HAMAP: DNA polymerase, error-prone; SMART: Polymerase/histidinol phosphatase, N-terminal
YP_005715082.1	PFAM: DNA-repair protein, UmuC-like; KEGG: smd:Smed_3022 hypothetical protein
YP_005715083.1	KEGG: smd:Smed_3023 hypothetical protein
YP_005715084.1	PFAM: Protein of unknown function DUF1025; KEGG: smd:Smed_3024 hypothetical protein
YP_005715085.1	PFAM: Domain of unknown function DUF1737; KEGG: smd:Smed_3025 hypothetical protein
YP_005715086.1	KEGG: smd:Smed_3026 citrate (pro-3S)-lyase; PFAM: Aldehyde-lyase domain
YP_005715087.1	KEGG: smd:Smed_3027 hypothetical protein
YP_005715088.1	TIGRFAM: 3-isopropylmalate dehydratase, small subunit; HAMAP: 3-isopropylmalate dehydratase, small subunit; KEGG: smd:Smed_3028 isopropylmalate isomerase small subunit; PFAM: Aconitase A/isopropylmalate dehydratase small subunit, swivel
YP_005715089.1	PFAM: Endoribonuclease L-PSP; KEGG: smd:Smed_3029 endoribonuclease L-PSP
YP_005715090.1	PFAM: Homoserine O-succinyltransferase; TIGRFAM: Homoserine O-succinyltransferase; HAMAP: Homoserine O-succinyltransferase; KEGG: smd:Smed_3030 homoserine O-succinyltransferase
YP_005715091.1	KEGG: smd:Smed_3031 aldose 1-epimerase; PFAM: Aldose 1-epimerase
YP_005715092.1	KEGG: bbt:BBta_2276 putative CobW protein involved in cobalamin synthesis; PFAM: Cobalamin (vitamin B12) biosynthesis CobW-like; Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal; SMART: Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal
YP_005715093.1	PFAM: YbaK/aminoacyl-tRNA synthetase-associated domain; KEGG: smd:Smed_3044 YbaK/prolyl-tRNA synthetase associated region
YP_005715094.1	KEGG: smd:Smed_3045 thioredoxin; TIGRFAM: Thioredoxin; PFAM: Thioredoxin domain
YP_005715095.1	KEGG: smd:Smed_3046 peptidase S16 lon domain-containing protein; PFAM: Peptidase S16, lon N-terminal; SMART: Peptidase S16, lon N-terminal
YP_005715096.1	KEGG: smd:Smed_3047 hypothetical protein; HAMAP: Uncharacterised protein family UPF0434/Trm112; PFAM: Uncharacterised protein family UPF0434/Trm112
YP_005715097.1	KEGG: smd:Smed_3048 2-octaprenyl-6-methoxyphenyl hydroxylase; TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6; PFAM: FAD dependent oxidoreductase
YP_005715098.1	TIGRFAM: Acyl-CoA thioesterase; KEGG: smd:Smed_3049 acyl-CoA thioesterase II; PFAM: Acyl-CoA thioesterase
YP_005715099.1	KEGG: ara:Arad_4452 nitrogen regulatory protein P-II; PFAM: Nitrogen regulatory protein PII; SMART: Nitrogen regulatory protein PII
YP_005715100.1	KEGG: smd:Smed_3051 ammonium transporter; TIGRFAM: Ammonium transporter; PFAM: Ammonium transporter
YP_005715101.1	KEGG: smd:Smed_3052 cell divisionFtsK/SpoIIIE; PFAM: Cell divisionFtsK/SpoIIIE; DNA translocase FtsK gamma; SMART: DNA translocase FtsK gamma; ATPase, AAA+ type, core
YP_005715102.1	PFAM: Outer membrane lipoprotein carrier protein LolA; KEGG: smd:Smed_3053 outer membrane lipoprotein carrier protein LolA
YP_005715103.1	PFAM: Alpha/beta hydrolase fold-1; KEGG: rle:pRL120032 hypothetical protein
YP_005715104.1	PFAM: Xylose isomerase, TIM barrel domain; KEGG: rlg:Rleg_5223 xylose isomerase domain protein TIM barrel
YP_005715105.1	KEGG: rlg:Rleg_5222 oxidoreductase domain protein; PFAM: Oxidoreductase, N-terminal
YP_005715106.1	KEGG: bge:BC1002_5894 periplasmic sugar-binding protein of sugar ABC transporter
YP_005715107.1	PFAM: ABC transporter permease; KEGG: rlt:Rleg2_2942 monosaccharide-transporting ATPase
YP_005715108.1	PFAM: ABC transporter-like; KEGG: rec:RHECIAT_CH0003431 probable sugar ABC transporter, ATP-binding protein; SMART: ATPase, AAA+ type, core
YP_005715109.1	PFAM: ROK; Transcription regulator TrmB, N-terminal; KEGG: ara:Arad_12395 transcription regulator protein
YP_005715110.1	PFAM: ROK; KEGG: mrb:Mrub_1270 ROK family protein
YP_005715111.1	KEGG: smd:Smed_3054 exodeoxyribonuclease III; TIGRFAM: AP endonuclease, family 1; Exodeoxyribonuclease III xth; PFAM: Endonuclease/exonuclease/phosphatase
YP_005715112.1	KEGG: smd:Smed_3055 cyclic nucleotide-binding protein; PFAM: Cyclic nucleotide-binding domain; SMART: Cyclic nucleotide-binding domain
YP_005715113.1	KEGG: smd:Smed_3056 two component transcriptional regulator; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal
YP_005715114.1	KEGG: smd:Smed_3057 hypothetical protein
YP_005715115.1	KEGG: rhi:NGR_c31410 putative phosphohistidine phosphatase protein; PFAM: Histidine phosphatase superfamily, clade-1; SMART: Histidine phosphatase superfamily, clade-1
YP_005715116.1	TIGRFAM: 3-isopropylmalate dehydratase, large subunit; HAMAP: 3-isopropylmalate dehydratase, large subunit; KEGG: smd:Smed_3059 isopropylmalate isomerase large subunit; PFAM: Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha
YP_005715117.1	manually curated; KEGG: smd:Smed_3060 hypothetical protein
YP_005715118.1	KEGG: smd:Smed_3061 MarR family transcriptional regulator; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR
YP_005715119.1	KEGG: smd:Smed_3062 Bcr/CflA subfamily drug resistance transporter; TIGRFAM: Drug resistance transporter Bcr/CflA subfamily; PFAM: Major facilitator superfamily MFS-1
YP_005715120.1	PFAM: Argininosuccinate synthase; TIGRFAM: Argininosuccinate synthase; HAMAP: Argininosuccinate synthase; KEGG: smd:Smed_3063 argininosuccinate synthase
YP_005715121.1	PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: rhi:NGR_c32530 lysine exporter protein
YP_005715122.1	PFAM: ABC transporter-like; KEGG: smd:Smed_3065 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_005715123.1	PFAM: ABC transporter permease; KEGG: smd:Smed_3066 inner-membrane translocator
YP_005715124.1	PFAM: ABC transporter substrate binding protein; KEGG: smd:Smed_3067 hypothetical protein
YP_005715125.1	TIGRFAM: Ribosomal RNA large subunit methyltransferase RlmN; HAMAP: Ribosomal RNA large subunit methyltransferase RlmN; KEGG: smd:Smed_3068 radical SAM protein; PFAM: Radical SAM
YP_005715126.1	KEGG: smd:Smed_3069 putative signal peptide protein
YP_005715127.1	PFAM: Transposase, IS4-like; KEGG: ret:RHE_PD00041 insertion sequence transposase protein
YP_005715128.1	PFAM: Protein of unknown function DUF1232; KEGG: smd:Smed_3070 hypothetical protein
YP_005715129.1	KEGG: smd:Smed_3071 pterin-4-alpha-carbinolamine dehydratase; HAMAP: Transcriptional coactivator/pterin dehydratase; PFAM: Transcriptional coactivator/pterin dehydratase
YP_005715130.1	KEGG: smd:Smed_3072 2'-5' RNA ligase; TIGRFAM: 2',5' RNA ligase; PFAM: Phosphoesterase, HXTX
YP_005715131.1	KEGG: smd:Smed_3073 GDSL family lipase; PFAM: Lipase, GDSL
YP_005715132.1	PFAM: ABC transporter-like; KEGG: smd:Smed_3074 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_005715133.1	PFAM: Domain of unknown function DUF214, ABC transporter permease; KEGG: smd:Smed_3075 hypothetical protein
YP_005715134.1	PFAM: Inhibitor of apoptosis-promoting Bax1-related; KEGG: smd:Smed_3076 hypothetical protein
YP_005715135.1	KEGG: smd:Smed_3077 GCN5-related N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase (GNAT) domain
YP_005715136.1	HAMAP: Peptidase S14, ClpP; KEGG: smd:Smed_3078 ATP-dependent Clp protease proteolytic subunit; PFAM: Peptidase S14, ClpP
YP_005715137.1	KEGG: smd:Smed_3079 hypothetical protein
YP_005715138.1	KEGG: smd:Smed_3080 regulatory protein ArsR; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR
YP_005715139.1	KEGG: smd:Smed_3081 hypothetical protein
YP_005715140.1	PFAM: Protein of unknown function DUF1223; KEGG: smd:Smed_3082 hypothetical protein
YP_005715141.1	TIGRFAM: Aconitase/iron regulatory protein 2; KEGG: smd:Smed_3083 aconitate hydratase; PFAM: Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha; Aconitase A/isopropylmalate dehydratase small subunit, swivel
YP_005715142.1	SMART: ATPase, AAA+ type, core; TIGRFAM: ABC transporter, haem export, CcmA; KEGG: smd:Smed_3084 cytochrome c biogenesis protein CcmA; PFAM: ABC transporter-like
YP_005715143.1	KEGG: smd:Smed_3085 heme exporter protein CcmB; TIGRFAM: Cytochrome c-type biogenesis protein CcmB; PFAM: Cytochrome c-type biogenesis protein CcmB
YP_005715144.1	KEGG: smd:Smed_3086 heme exporter protein CcmC; TIGRFAM: Cytochrome c-type biogenesis protein CcmC; PFAM: Cytochrome c assembly protein
YP_005715145.1	KEGG: smd:Smed_3087 heme exporter protein D (CcmD); TIGRFAM: Haem exporter protein D (CcmD); PFAM: Haem exporter protein D (CcmD)
YP_005715146.1	KEGG: smd:Smed_3088 periplasmic protein thiol--disulphide oxidoreductase DsbE; TIGRFAM: Periplasmic protein thiol:disulphide oxidoreductase DsbE; PFAM: Redoxin
YP_005715147.1	KEGG: smd:Smed_3089 hypothetical protein; HAMAP: Protein of unknown function DUF2585; PFAM: Protein of unknown function DUF2585
YP_005715148.1	TIGRFAM: Intracellular septation protein A; HAMAP: Intracellular septation protein A; KEGG: smd:Smed_3090 intracellular septation protein A; PFAM: Intracellular septation protein A
YP_005715149.1	TIGRFAM: Cell division transporter substrate-binding protein FtsY; PFAM: Signal recognition particle, SRP54 subunit, GTPase; Signal recognition particle, SRP54 subunit, helical bundle; KEGG: smd:Smed_3091 signal recognition particle-docking protein FtsY; SMART: Signal recognition particle, SRP54 subunit, GTPase; Signal recognition particle, SRP54 subunit, helical bundle; ATPase, AAA+ type, core
YP_005715150.1	TIGRFAM: MiaB-like tRNA modifying enzyme; Methylthiotransferase; PFAM: Methylthiotransferase, N-terminal; Radical SAM; KEGG: smd:Smed_3092 MiaB-like tRNA modifying enzyme; SMART: Elongator protein 3/MiaB/NifB
YP_005715151.1	TIGRFAM: Diaminopimelate epimerase; HAMAP: Diaminopimelate epimerase; KEGG: rhi:NGR_c32280 diaminopimelate epimerase; PFAM: Diaminopimelate epimerase
YP_005715152.1	TIGRFAM: Signal recognition particle, SRP; PFAM: Signal recognition particle, SRP54 subunit, GTPase; Signal recognition particle, SRP54 subunit, helical bundle; Signal recognition particle, SRP54 subunit, M-domain; KEGG: smd:Smed_3095 signal recognition particle protein; SMART: Signal recognition particle, SRP54 subunit, GTPase; Signal recognition particle, SRP54 subunit, helical bundle; ATPase, AAA+ type, core
YP_005715153.1	TIGRFAM: Chorismate mutase, bacteria; PFAM: Chorismate mutase, type II; KEGG: smd:Smed_3096 chorismate mutase; SMART: Chorismate mutase
YP_005715154.1	TIGRFAM: Ribosomal protein S16; HAMAP: Ribosomal protein S16; KEGG: smd:Smed_3097 30S ribosomal protein S16; PFAM: Ribosomal protein S16
YP_005715155.1	TIGRFAM: 16S rRNA processing protein RimM; HAMAP: 16S rRNA processing protein RimM; KEGG: smd:Smed_3098 16S rRNA-processing protein RimM; PFAM: RimM protein; PRC-barrel
YP_005715156.1	PFAM: tRNA (guanine-N1-)-methyltransferase; TIGRFAM: tRNA (guanine-N1-)-methyltransferase, bacteria; HAMAP: tRNA (guanine-N1-)-methyltransferase, bacteria; KEGG: smd:Smed_3099 tRNA (guanine-N(1)-)-methyltransferase
YP_005715157.1	PFAM: Protein of unknown function DUF81; KEGG: smd:Smed_3100 hypothetical protein
YP_005715158.1	TIGRFAM: Ribosomal protein L19; HAMAP: Ribosomal protein L19; KEGG: smd:Smed_3101 50S ribosomal protein L19; PFAM: Ribosomal protein L19
YP_005715159.1	KEGG: smd:Smed_3102 extracellular solute-binding protein; PFAM: Extracellular solute-binding protein, family 3; SMART: Extracellular solute-binding protein, family 3; Ionotropic glutamate receptor
YP_005715160.1	KEGG: smd:Smed_3103 polar amino acid ABC transporter, inner membrane subunit; TIGRFAM: Amino acid ABC transporter, permease protein, 3-TM domain, His/Glu/Gln/Arg/opine family; PFAM: Binding-protein-dependent transport systems inner membrane component
YP_005715161.1	KEGG: smd:Smed_3104 ABC transporter related; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core
YP_005715162.1	KEGG: smd:Smed_3105 thiamine pyrophosphokinase; TIGRFAM: Thiamin pyrophosphokinase; PFAM: Thiamin pyrophosphokinase, catalytic domain
YP_005715163.1	KEGG: smd:Smed_3106 hypothetical protein
YP_005715164.1	KEGG: rhi:NGR_c32610 thiamine transporter substrate binding subunit; TIGRFAM: Proteobacterial thiamine ABC transporter, periplasmic binding protein; Thiamine ABC transporter periplasmic binding protein; PFAM: Bacterial extracellular solute-binding, family 1
YP_005715165.1	KEGG: smd:Smed_3108 thiamine transporter membrane protein; TIGRFAM: Thiamine ABC transporter, permease protein; PFAM: Binding-protein-dependent transport systems inner membrane component
YP_005715166.1	SMART: ATPase, AAA+ type, core; TIGRFAM: ABC transporter, thiamine, ATP-binding protein; KEGG: smd:Smed_3109 ABC transporter ATP-binding protein; PFAM: ABC transporter-like
YP_005715167.1	PFAM: Peptidase M48; KEGG: smd:Smed_3110 peptidase M48 Ste24p
YP_005715168.1	KEGG: smd:Smed_3111 RNA polymerase factor sigma-32; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma-70 region 4
YP_005715169.1	PFAM: Transcription factor CarD; KEGG: smd:Smed_3112 CarD family transcriptional regulator
YP_005715170.1	PFAM: 4Fe-4S binding domain; KEGG: smd:Smed_3113 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
YP_005715171.1	KEGG: smd:Smed_3114 RNA-binding S4 domain-containing protein; PFAM: RNA-binding S4; SMART: RNA-binding S4
YP_005715172.1	KEGG: smd:Smed_3115 helicase domain-containing protein; PFAM: Helicase, C-terminal; SMART: Helicase, C-terminal
YP_005715173.1	SMART: Polyketide synthase/Fatty acid synthase, KR; TIGRFAM: Acetoacetyl-CoA reductase; KEGG: smd:Smed_3116 acetoacetyl-CoA reductase; PFAM: Short-chain dehydrogenase/reductase SDR
YP_005715174.1	TIGRFAM: Thiolase; KEGG: smd:Smed_3117 acetyl-CoA acetyltransferase; PFAM: Thiolase, N-terminal; Thiolase, C-terminal
YP_005715175.1	KEGG: smd:Smed_3118 polyhydroxyalkonate synthesis repressor, PhaR; TIGRFAM: Polyhydroxyalkanoate synthesis repressor PhaR; PFAM: PHA accumulation regulator DNA-binding, N-terminal; PHB accumulation regulatory
YP_005715176.1	TIGRFAM: Ribosomal protein L32p; HAMAP: Ribosomal protein L32p; KEGG: smd:Smed_3119 50S ribosomal protein L32; PFAM: Ribosomal protein L32p
YP_005715177.1	PFAM: Glutathione S-transferase, N-terminal; KEGG: rhi:NGR_c32750 glutathione S-transferase domain protein
YP_005715178.1	TIGRFAM: Monofunctional biosynthetic peptidoglycan transglycosylase; HAMAP: Monofunctional biosynthetic peptidoglycan transglycosylase; KEGG: smd:Smed_3121 monofunctional biosynthetic peptidoglycan transglycosylase; PFAM: Glycosyl transferase, family 51
YP_005715179.1	KEGG: smd:Smed_3122 polyprenyl synthetase; PFAM: Polyprenyl synthetase
YP_005715180.1	PFAM: Aminotransferase, class I/classII; TIGRFAM: Histidinol-phosphate aminotransferase; HAMAP: Histidinol-phosphate aminotransferase; KEGG: rhi:NGR_c32780 histidinol-phosphate aminotransferase
YP_005715181.1	PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: ara:Arad_4691 amino acid efflux protein
YP_005715182.1	KEGG: smd:Smed_3133 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; TIGRFAM: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type; PFAM: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type
YP_005715183.1	PFAM: Major facilitator superfamily MFS-1; KEGG: smd:Smed_3134 major facilitator transporter
YP_005715184.1	KEGG: smd:Smed_3135 DeoR family transcriptional regulator; PFAM: HTH transcriptional regulator, DeoR; HTH transcriptional regulator, DeoR N-terminal; SMART: HTH transcriptional regulator, DeoR N-terminal
YP_005715185.1	KEGG: smd:Smed_3136 extracellular solute-binding protein; PFAM: Extracellular solute-binding protein, family 3; SMART: Extracellular solute-binding protein, family 3
YP_005715186.1	KEGG: smd:Smed_3137 polar amino acid ABC transporter, inner membrane subunit; TIGRFAM: Amino acid ABC transporter, permease protein, 3-TM domain, His/Glu/Gln/Arg/opine family; PFAM: Binding-protein-dependent transport systems inner membrane component
YP_005715187.1	PFAM: ABC transporter-like; KEGG: smd:Smed_3138 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_005715188.1	SMART: Biotin carboxylase, C-terminal; TIGRFAM: Pyruvate carboxylase; KEGG: smd:Smed_3139 pyruvate carboxylase; PFAM: Carboxylase, conserved domain; Carbamoyl-phosphate synthetase, large subunit, ATP-binding; Carbamoyl-phosphate synthase, large subunit, N-terminal; Biotin carboxylase, C-terminal; Pyruvate carboxyltransferase; Biotin/lipoyl attachment
YP_005715189.1	KEGG: smd:Smed_3140 regulatory protein LuxR; PFAM: Transcription factor LuxR-like, autoinducer-binding domain; Transcription regulator LuxR, C-terminal; SMART: Transcription regulator LuxR, C-terminal
YP_005715190.1	SMART: ATPase, AAA+ type, core; TIGRFAM: Glucan exporter ATP-binding protein; KEGG: smd:Smed_3142 cyclic beta-1,2-glucan ABC transporter; PFAM: ABC transporter-like; ABC transporter, transmembrane domain
YP_005715191.1	KEGG: rpc:RPC_2933 hypothetical protein
YP_005715192.1	PFAM: Uncharacterised conserved protein UCP028704, OpgC; KEGG: smd:Smed_3154 hypothetical protein
YP_005715193.1	PFAM: Protein of unknown function DUF2329; Glycosyltransferase 36 associated; Glycosyltransferase 36; Putative carbohydrate binding; Protein of unknown function DUF3131; KEGG: smd:Smed_3155 glycosyltransferase 36
YP_005715194.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: smd:Smed_3156 LysR family transcriptional regulator
YP_005715195.1	PFAM: Protein of unknown function DUF1338; KEGG: smd:Smed_3157 hypothetical protein
YP_005715196.1	KEGG: smd:Smed_3158 FAD linked oxidase domain-containing protein; PFAM: FAD linked oxidase, N-terminal; FAD-linked oxidase, C-terminal
YP_005715197.1	KEGG: smd:Smed_3159 aldehyde dehydrogenase; PFAM: Aldehyde dehydrogenase domain
YP_005715198.1	KEGG: smd:Smed_3160 aminotransferase class I and II; PFAM: Aminotransferase, class I/classII
YP_005715199.1	KEGG: smd:Smed_3161 XRE family transcriptional regulator; PFAM: Cupin 2, conserved barrel; Helix-turn-helix type 3; SMART: Helix-turn-helix type 3
YP_005715200.1	KEGG: smd:Smed_3162 beta alanine--pyruvate transaminase; PFAM: Aminotransferase class-III
YP_005715201.1	KEGG: smd:Smed_3163 hydroxypyruvate reductase; PFAM: MOFRL domain
YP_005715202.1	KEGG: smd:Smed_3164 choline dehydrogenase; PFAM: Glucose-methanol-choline oxidoreductase, N-terminal; Glucose-methanol-choline oxidoreductase, C-terminal
YP_005715203.1	KEGG: smd:Smed_3165 3-ketoacyl-(acyl-carrier-protein) reductase; PFAM: Short-chain dehydrogenase/reductase SDR
YP_005715204.1	PFAM: Glucose-methanol-choline oxidoreductase, N-terminal; FAD dependent oxidoreductase; KEGG: rhi:NGR_c33110 putative dehydrogenase transmembrane protein
YP_005715205.1	PFAM: ABC transporter-like; Transport-associated OB, type 2; KEGG: smd:Smed_3167 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_005715206.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_3168 binding-protein-dependent transport systems inner membrane component
YP_005715207.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_3169 binding-protein-dependent transport systems inner membrane component
YP_005715208.1	PFAM: Bacterial extracellular solute-binding, family 1; KEGG: smd:Smed_3170 extracellular solute-binding protein
YP_005715209.1	KEGG: smd:Smed_3171 aldehyde dehydrogenase; PFAM: Aldehyde dehydrogenase domain
YP_005715210.1	PFAM: Crotonase, core; KEGG: smd:Smed_3172 enoyl-CoA hydratase/isomerase
YP_005715211.1	KEGG: smd:Smed_3173 coenzyme A transferase; PFAM: Coenzyme A transferase; SMART: Coenzyme A transferase
YP_005715212.1	PFAM: Oxidoreductase, N-terminal; Oxidoreductase, C-terminal; KEGG: smd:Smed_3174 oxidoreductase domain-containing protein
YP_005715213.1	KEGG: smd:Smed_3175 periplasmic binding protein/LacI transcriptional regulator; PFAM: Periplasmic binding protein/LacI transcriptional regulator; HTH transcriptional regulator, LacI; SMART: HTH transcriptional regulator, LacI
YP_005715214.1	PFAM: Protein of unknown function DUF993; KEGG: smd:Smed_3176 hypothetical protein
YP_005715215.1	KEGG: smd:Smed_3177 peptidyl-dipeptidase DCP; PFAM: Peptidase M3A/M3B, thimet/oligopeptidase F
YP_005715216.1	PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: rhi:NGR_c33170 putative LysE type translocator
YP_005715217.1	PFAM: Isocitrate/isopropylmalate dehydrogenase; TIGRFAM: Isopropylmalate dehydrogenase; HAMAP: Isopropylmalate dehydrogenase; KEGG: rhi:NGR_c33180 3-isopropylmalate dehydrogenase
YP_005715218.1	KEGG: smd:Smed_3179 phosphoesterase PA-phosphatase related; PFAM: Phosphatidic acid phosphatase type 2/haloperoxidase; SMART: Phosphatidic acid phosphatase type 2/haloperoxidase
YP_005715219.1	PFAM: General substrate transporter; KEGG: smd:Smed_3180 major facilitator transporter
YP_005715220.1	PFAM: PilT protein, N-terminal; KEGG: rhi:NGR_b10440 putative PIN domain signalling protein
YP_005715221.1	KEGG: rhi:NGR_b10450 putative virulence-associated protein; PFAM: Transcription regulator AbrB/SpoV, predicted; SMART: Transcription regulator AbrB/SpoV, predicted
YP_005715222.1	SMART: Semialdehyde dehydrogenase, NAD-binding; TIGRFAM: Aspartate-semialdehyde dehydrogenase, bacterial; KEGG: smd:Smed_3182 aspartate-semialdehyde dehydrogenase; PFAM: Semialdehyde dehydrogenase, dimerisation domain; Semialdehyde dehydrogenase, NAD-binding
YP_005715223.1	TIGRFAM: Lytic murein transglycosylase; KEGG: smd:Smed_3183 lytic murein transglycosylase
YP_005715224.1	PFAM: Carbonic anhydrase; KEGG: smd:Smed_3185 carbonate dehydratase; SMART: Carbonic anhydrase
YP_005715225.1	TIGRFAM: Pyridoxal phosphate (active vitamin B6) biosynthesis, pyridoxal kinase; KEGG: smd:Smed_3186 pyridoxamine kinase; PFAM: Phosphomethylpyrimidine kinase type-1
YP_005715226.1	PFAM: Bacterial NAD-glutamate dehydrogenase; KEGG: smd:Smed_3187 NAD-glutamate dehydrogenase
YP_005715227.1	PFAM: Major facilitator superfamily MFS-1; KEGG: smd:Smed_3188 major facilitator transporter
YP_005715228.1	KEGG: smd:Smed_3189 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; PFAM: AICARFT/IMPCHase bienzyme, transformylase domain; Methylglyoxal synthase-like domain; TIGRFAM: AICARFT/IMPCHase bienzyme; HAMAP: AICARFT/IMPCHase bienzyme; SMART: AICARFT/IMPCHase bienzyme, transformylase domain; Methylglyoxal synthase-like domain
YP_005715229.1	KEGG: smd:Smed_3190 heparinase II/III family protein; manually curated; PFAM: Heparinase II/III-like
YP_005715230.1	PFAM: Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p; NusB/RsmB/TIM44; KEGG: smd:Smed_3191 Fmu (Sun) domain-containing protein
YP_005715231.1	PFAM: Peptidase M48; KEGG: smd:Smed_3192 heat shock protein HtpX
YP_005715232.1	PFAM: Protein of unknown function DUF1674; KEGG: smd:Smed_3193 hypothetical protein
YP_005715233.1	PFAM: AMP-dependent synthetase/ligase; TIGRFAM: Acetate-CoA ligase; HAMAP: Acetate-CoA ligase; KEGG: smd:Smed_3194 acetyl-CoA synthetase
YP_005715234.1	PFAM: Protein of unknown function DUF1013; KEGG: smd:Smed_3195 hypothetical protein
YP_005715235.1	KEGG: smd:Smed_3196 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase
YP_005715236.1	KEGG: smd:Smed_3197 alanine racemase domain-containing protein; TIGRFAM: pyridoxal phosphate-dependent enzyme, YBL036C type; PFAM: Alanine racemase, N-terminal
YP_005715237.1	KEGG: smd:Smed_3198 leucyl-tRNA synthetase; TIGRFAM: Leucyl-tRNA synthetase, class Ia, bacterial/mitochondrial
YP_005715238.1	PFAM: Protein of unknown function DUF2159, secreted; KEGG: smd:Smed_3199 hypothetical protein
YP_005715239.1	KEGG: smd:Smed_3200 DNA polymerase III subunit delta; TIGRFAM: DNA polymerase III, delta subunit; PFAM: DNA polymerase III, delta
YP_005715240.1	TIGRFAM: ParB-like partition protein; PFAM: ParB-like nuclease; Transcriptional repressor protein, KorB; KEGG: smd:Smed_3201 ParB-like partition protein; SMART: ParB-like nuclease
YP_005715241.1	PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: smd:Smed_3202 cobyrinic acid ac-diamide synthase
YP_005715242.1	TIGRFAM: rRNA small subunit methyltransferase G; HAMAP: rRNA small subunit methyltransferase G; KEGG: smd:Smed_3203 16S rRNA methyltransferase GidB; PFAM: rRNA small subunit methyltransferase G
YP_005715243.1	TIGRFAM: Glucose-inhibited division protein A; HAMAP: Glucose-inhibited division protein A; KEGG: smd:Smed_3204 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; PFAM: Glucose-inhibited division protein A-related
YP_005715244.1	TIGRFAM: tRNA modification GTPase TrmE; Small GTP-binding protein; HAMAP: tRNA modification GTPase TrmE; KEGG: smd:Smed_3205 tRNA modification GTPase TrmE; PFAM: GTP-binding protein TrmE, N-terminal; GTP-binding protein, HSR1-related
YP_005715245.1	TIGRFAM: Transcription termination factor Rho; PFAM: ATPase, alpha/beta subunit, nucleotide-binding domain; Rho termination factor, RNA-binding; Rho termination factor, N-terminal; KEGG: smd:Smed_3206 transcription termination factor Rho; SMART: Rho termination factor, N-terminal; Cold shock protein; ATPase, AAA+ type, core
YP_005715246.1	KEGG: smd:Smed_3207 hypothetical protein; TIGRFAM: Conserved hypothetical protein CHP00701; PFAM: Uncharacterised protein family UPF0093
YP_005715247.1	PFAM: Uroporphyrinogen decarboxylase (URO-D); TIGRFAM: Uroporphyrinogen decarboxylase HemE; HAMAP: Uroporphyrinogen decarboxylase HemE; KEGG: smd:Smed_3208 uroporphyrinogen decarboxylase
YP_005715248.1	KEGG: smd:Smed_3209 hypothetical protein; HAMAP: Protein of unknown function DUF299, phosphotransferase, predicted; PFAM: Protein of unknown function DUF299, phosphotransferase, predicted
YP_005715249.1	TIGRFAM: Maf-like protein; HAMAP: Maf-like protein; KEGG: smd:Smed_3210 Maf-like protein; PFAM: Maf-like protein
YP_005715250.1	TIGRFAM: Shikimate dehydrogenase; HAMAP: Shikimate, quinate/shikimate dehydrogenase; KEGG: smd:Smed_3211 shikimate 5-dehydrogenase; PFAM: Shikimate dehydrogenase substrate binding, N-terminal; Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase
YP_005715251.1	PFAM: Dephospho-CoA kinase; TIGRFAM: Dephospho-CoA kinase; HAMAP: Dephospho-CoA kinase; KEGG: smd:Smed_3212 dephospho-CoA kinase
YP_005715252.1	SMART: Exonuclease; TIGRFAM: DNA polymerase 3, epsilon subunit; DNA polymerase III, epsilon subunit; KEGG: smd:Smed_3213 DNA polymerase III subunit epsilon; PFAM: Exonuclease, RNase T/DNA polymerase III
YP_005715253.1	TIGRFAM: Bacterial protein export chaperone SecB; HAMAP: Bacterial protein export chaperone SecB; KEGG: smd:Smed_3214 preprotein translocase subunit SecB; PFAM: Bacterial protein export chaperone SecB
YP_005715254.1	PFAM: FxsA cytoplasmic membrane protein; KEGG: smd:Smed_3215 FxsA cytoplasmic membrane protein
YP_005715255.1	KEGG: smd:Smed_3216 import inner membrane translocase subunit Tim44; PFAM: Membrane transporter, Tim44-related/Ribosomal protein L45; SMART: Membrane transporter, Tim44-related/Ribosomal protein L45
YP_005715256.1	KEGG: smd:Smed_3217 MltA domain-containing protein; PFAM: Lytic transglycosylase MltA; 3D; SMART: Lytic transglycosylase MltA
YP_005715257.1	KEGG: smd:Smed_3218 Smr protein/MutS2; PFAM: Smr protein/MutS2 C-terminal; SMART: Smr protein/MutS2 C-terminal
YP_005715258.1	KEGG: smd:Smed_3219 XRE family transcriptional regulator; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3
YP_005715259.1	SMART: DNA topoisomerase, type IIA, subunit B/N-terminal; ATPase-like, ATP-binding domain; TIGRFAM: DNA gyrase, subunit B; KEGG: smd:Smed_3220 DNA gyrase subunit B; PFAM: DNA topoisomerase, type IIA, subunit B, domain 2; ATPase-like, ATP-binding domain; Toprim domain; DNA topoisomerase, type IIA, subunit B, C-terminal
YP_005715260.1	PFAM: Nitroreductase-like; KEGG: smd:Smed_3221 nitroreductase
YP_005715261.1	TIGRFAM: Succinic semialdehyde dehydrogenase; KEGG: smd:Smed_3222 succinic semialdehyde dehydrogenase; PFAM: Aldehyde dehydrogenase domain
YP_005715262.1	KEGG: smd:Smed_3223 2-dehydro-3-deoxyglucarate aldolase; PFAM: Aldehyde-lyase domain
YP_005715263.1	KEGG: smd:Smed_3224 GntR family transcriptional regulator; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: GntR, C-terminal
YP_005715264.1	PFAM: D-galactarate dehydratase/Altronate hydrolase, C-terminal; SAF domain; KEGG: smd:Smed_3225 altronate dehydratase; SMART: SAF domain
YP_005715265.1	KEGG: smd:Smed_3226 pyridoxal 4-dehydrogenase; PFAM: NADP-dependent oxidoreductase domain
YP_005715266.1	PFAM: Periplasmic binding protein/LacI transcriptional regulator; KEGG: smd:Smed_3227 periplasmic binding protein/LacI transcriptional regulator
YP_005715267.1	PFAM: ABC transporter-like; KEGG: smd:Smed_3228 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_005715268.1	PFAM: ABC transporter permease; KEGG: rhi:NGR_c33700 putative sugar ABC transporter, permease protein
YP_005715269.1	KEGG: smd:Smed_3230 alcohol dehydrogenase; PFAM: Alcohol dehydrogenase GroES-like; Alcohol dehydrogenase, C-terminal
YP_005715270.1	KEGG: smd:Smed_3233 polyhydroxyalkanoate depolymerase, intracellular; TIGRFAM: Polyhydroxyalkanoate depolymerase; PFAM: PHB de-polymerase, C-terminal
YP_005715271.1	KEGG: smd:Smed_3234 hypothetical protein
YP_005715272.1	KEGG: smd:Smed_3235 hypothetical protein; manually curated; PFAM: Protein of unknown function DUF45
YP_005715273.1	KEGG: smd:Smed_3236 N-(5'-phosphoribosyl)anthranilate isomerase; PFAM: N-(5'phosphoribosyl)anthranilate isomerase (PRAI)
YP_005715274.1	PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit; TIGRFAM: Tryptophan synthase, beta chain; HAMAP: Tryptophan synthase beta chain/beta chain-like; KEGG: smd:Smed_3237 tryptophan synthase subunit beta
YP_005715275.1	PFAM: Tryptophan synthase, alpha chain; TIGRFAM: Tryptophan synthase, alpha chain; HAMAP: Tryptophan synthase, alpha chain; KEGG: smd:Smed_3238 tryptophan synthase subunit alpha
YP_005715276.1	PFAM: Carboxyl transferase; TIGRFAM: Acetyl-CoA carboxylase carboxyl transferase, beta subunit; HAMAP: Acetyl-CoA carboxylase carboxyl transferase, beta subunit; KEGG: smd:Smed_3239 acetyl-CoA carboxylase subunit beta
YP_005715277.1	TIGRFAM: Folylpolyglutamate synthetase; KEGG: smd:Smed_3240 FolC bifunctional protein; PFAM: Mur ligase, central
YP_005715278.1	KEGG: smd:Smed_3241 thioredoxin; TIGRFAM: Thioredoxin; PFAM: Thioredoxin domain
YP_005715279.1	KEGG: smd:Smed_3242 double-strand break repair helicase AddA; TIGRFAM: DNA helicase (double-strand break repair), AddA type; PFAM: DNA helicase, UvrD/REP type
YP_005715280.1	TIGRFAM: Double-strand break repair protein AddB; KEGG: smd:Smed_3243 double-strand break repair protein AddB
YP_005715281.1	PFAM: Nucleotidyl transferase; KEGG: smd:Smed_3244 nucleotidyl transferase
YP_005715282.1	KEGG: smd:Smed_3245 hypothetical protein; TIGRFAM: Uncharacterised protein family UPF0079, ATPase bacteria; PFAM: Aminoglycoside phosphotransferase; Uncharacterised protein family UPF0079, ATPase bacteria
YP_005715283.1	KEGG: smd:Smed_3246 histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain
YP_005715284.1	PFAM: Adenosylhomocysteinase; S-adenosyl-L-homocysteine hydrolase, NAD binding; TIGRFAM: Adenosylhomocysteinase; HAMAP: Adenosylhomocysteinase; KEGG: smd:Smed_3247 S-adenosyl-L-homocysteine hydrolase
YP_005715285.1	KEGG: rhi:NGR_c33890 putative phosphotransferase system, phosphocarrier HPr protein; TIGRFAM: Phosphotransferase system, phosphocarrier HPr protein; PFAM: Phosphotransferase system, phosphocarrier HPr protein
YP_005715286.1	PFAM: Phosphotransferase system, fructose subfamily IIA component; KEGG: smd:Smed_3249 PTS system fructose subfamily IIA component
YP_005715287.1	KEGG: smd:Smed_3250 HPr kinase
YP_005715288.1	KEGG: smd:Smed_3251 integral membrane sensor signal transduction histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; HAMP linker domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; HAMP linker domain
YP_005715289.1	KEGG: smd:Smed_3252 two component transcriptional regulator; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal
YP_005715290.1	TIGRFAM: Phosphoenolpyruvate carboxykinase, ATP-utilising; HAMAP: Phosphoenolpyruvate carboxykinase, ATP-utilising; KEGG: smd:Smed_3253 phosphoenolpyruvate carboxykinase; PFAM: Phosphoenolpyruvate carboxykinase, ATP-utilising
YP_005715291.1	PFAM: Peptide chain release factor class I/class II; KEGG: smd:Smed_3254 peptidyl-tRNA hydrolase domain protein
YP_005715292.1	KEGG: smd:Smed_3255 LysM domain/BON superfamily protein; PFAM: Transport-associated; Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding Lysin subgroup; Transport-associated and nodulation domain, bacteria
YP_005715293.1	PFAM: Oxoglutarate/iron-dependent oxygenase; KEGG: smd:Smed_3256 2OG-Fe(II) oxygenase
YP_005715294.1	TIGRFAM: Bacterial pantothenate kinase; HAMAP: Bacterial pantothenate kinase; KEGG: smd:Smed_3257 pantothenate kinase
YP_005715295.1	TIGRFAM: Phosphoribosyl-ATP pyrophosphohydrolase; HAMAP: Phosphoribosyl-ATP pyrophosphohydrolase; KEGG: smd:Smed_3258 phosphoribosyl-ATP pyrophosphatase; PFAM: Phosphoribosyl-ATP pyrophosphohydrolase-like
YP_005715296.1	PFAM: Histidine biosynthesis; TIGRFAM: Histidine biosynthesis, HisF; HAMAP: Histidine biosynthesis, HisF; KEGG: smd:Smed_3259 imidazole glycerol phosphate synthase subunit HisF
YP_005715297.1	PFAM: Histidine biosynthesis; TIGRFAM: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase HisA; HAMAP: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; KEGG: smd:Smed_3260 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
YP_005715298.1	TIGRFAM: Imidazole glycerol phosphate synthase, subunit H; HAMAP: Imidazole glycerol phosphate synthase, subunit H; KEGG: smd:Smed_3261 imidazole glycerol phosphate synthase subunit HisH; PFAM: Glutamine amidotransferase class-I, C-terminal
YP_005715299.1	KEGG: smd:Smed_3262 hypothetical protein
YP_005715300.1	HAMAP: Imidazoleglycerol-phosphate dehydratase; KEGG: rhi:NGR_c34040 imidazoleglycerol-phosphate dehydratase; PFAM: Imidazoleglycerol-phosphate dehydratase
YP_005715301.1	TIGRFAM: ATP-dependent protease, HslV subunit; HAMAP: ATP-dependent protease, HslV subunit; KEGG: rhi:NGR_c34050 ATP-dependent protease peptidase subunit; PFAM: Proteasome, subunit alpha/beta
YP_005715302.1	PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: smd:Smed_3265 GCN5-related N-acetyltransferase
YP_005715303.1	SMART: ATPase, AAA+ type, core; TIGRFAM: Heat shock protein HslU; KEGG: smd:Smed_3266 ATP-dependent protease ATP-binding subunit HslU; HAMAP: Heat shock protein HslU; PFAM: ATPase, AAA-2
YP_005715304.1	PFAM: Protein of unknown function DUF1402; KEGG: smd:Smed_3267 hypothetical protein
YP_005715305.1	KEGG: smd:Smed_3268 cytochrome P450; PFAM: Cytochrome P450
YP_005715306.1	PFAM: Hydantoinase/oxoprolinase; Hydantoinaseoxoprolinase, N-terminal; KEGG: smd:Smed_3269 hydantoinase/oxoprolinase
YP_005715307.1	TIGRFAM: Malate synthase G; KEGG: smd:Smed_3270 malate synthase G; PFAM: Malate synthase
YP_005715308.1	PFAM: YkuD domain; KEGG: smd:Smed_3271 ErfK/YbiS/YcfS/YnhG family protein
YP_005715309.1	PFAM: Protein of unknown function DUF1052; KEGG: smd:Smed_3272 hypothetical protein
YP_005715310.1	KEGG: smd:Smed_3273 two component fis family transcriptional regulator; PFAM: Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain
YP_005715311.1	KEGG: smd:Smed_3274 integral membrane sensor signal transduction histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain
YP_005715312.1	TIGRFAM: RNA helicase, ATP-dependent DEAH box, HrpB type; PFAM: RNA helicase, ATP-dependent, HrpB type, C-terminal; Helicase, C-terminal; DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Helicase-associated domain; KEGG: smd:Smed_3275 ATP-dependent helicase HrpB; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal; Helicase-associated domain
YP_005715313.1	PFAM: ABC transporter-like; KEGG: smd:Smed_3276 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_005715314.1	KEGG: smd:Smed_3277 putative permease ABC transporter protein
YP_005715315.1	PFAM: Bacterial extracellular solute-binding, family 1; KEGG: smd:Smed_3278 putative ABC transporter solute-binding protein
YP_005715316.1	KEGG: smd:Smed_6302 hypothetical protein
YP_005715317.1	KEGG: smd:Smed_6303 hypothetical protein
YP_005715318.1	KEGG: smd:Smed_6304 hypothetical protein
YP_005715319.1	KEGG: smd:Smed_6305 hypothetical protein
YP_005715320.1	KEGG: smd:Smed_5372 5-formyltetrahydrofolate cyclo-ligase; TIGRFAM: 5-formyltetrahydrofolate cyclo-ligase; PFAM: 5-formyltetrahydrofolate cyclo-ligase
YP_005715321.1	KEGG: swi:Swit_3154 cystathionine gamma-synthase; TIGRFAM: O-succinylhomoserine (thiol)-lyase; PFAM: Cys/Met metabolism, pyridoxal phosphate-dependent enzyme
YP_005715322.1	PFAM: HTH transcriptional regulator, LysR; LysR, substrate-binding; KEGG: swi:Swit_3159 LysR family transcriptional regulator
YP_005715323.1	PFAM: Cupin 2, conserved barrel; KEGG: rde:RD1_0099 hypothetical protein
YP_005715324.1	KEGG: smd:Smed_5364 HPP family protein?; PFAM: HPP; Cystathionine beta-synthase, core; SMART: Cystathionine beta-synthase, core
YP_005715325.1	KEGG: smd:Smed_5365 hypothetical protein
YP_005715326.1	HAMAP: Tetrahydrofolate dehydrogenase/cyclohydrolase; KEGG: ret:RHE_CH00694 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/5,10-methylene-tetrahydrofolate cyclohydrolase; PFAM: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
YP_005715327.1	PFAM: Sarcosine oxidase, gamma subunit; KEGG: rhi:NGR_c14330 sarcosine oxidase, gamma subunit
YP_005715328.1	KEGG: smd:Smed_3287 sarcosine oxidase alpha subunit family protein; TIGRFAM: Sarcosine oxidase, alpha subunit, heterotetrameric; PFAM: Glycine cleavage T-protein, N-terminal; Conserved hypothetical protein CHP00275, flavoprotein HI0933-like; Glycine cleavage T-protein, C-terminal barrel
YP_005715329.1	TIGRFAM: Sarcosine oxidase, delta subunit, heterotetrameric; KEGG: smd:Smed_3288 sarcosine oxidase delta subunit family protein; PFAM: Sarcosine oxidase, delta subunit, heterotetrameric
YP_005715330.1	TIGRFAM: Sarcosine oxidase, beta subunit, heterotetrameric; KEGG: smd:Smed_3289 sarcosine oxidase beta subunit family protein; PFAM: FAD dependent oxidoreductase
YP_005715331.1	KEGG: smd:Smed_3290 AraC family transcriptional regulator; PFAM: HTH transcriptional regulator, AraC; ThiJ/PfpI; SMART: Helix-turn-helix, AraC type, DNA binding domain
YP_005715332.1	PFAM: Glutamine amidotransferase, class-II; KEGG: smd:Smed_3291 glutamine amidotransferase class-II
YP_005715333.1	PFAM: Glutamate synthase, alpha subunit, C-terminal; KEGG: smd:Smed_3292 glutamate synthase alpha subunit
YP_005715334.1	KEGG: smd:Smed_3293 ferredoxin-dependent glutamate synthase; PFAM: Glutamate synthase, central-C
YP_005715335.1	TIGRFAM: Glutamine synthetase, type III; KEGG: smd:Smed_3294 glutamine synthetase catalytic region; PFAM: Glutamine synthetase, catalytic domain
YP_005715336.1	KEGG: smd:Smed_3295 hypothetical protein
YP_005715337.1	KEGG: smd:Smed_3296 putative signal peptide protein
YP_005715338.1	PFAM: Amino acid permease domain; KEGG: smd:Smed_3297 amino acid permease-associated region
YP_005715339.1	KEGG: smd:Smed_3298 hypothetical protein
YP_005715340.1	KEGG: smd:Smed_3299 hypothetical protein
YP_005715341.1	KEGG: smd:Smed_3300 hypothetical protein
YP_005715342.1	KEGG: smd:Smed_3301 XRE family transcriptional regulator; PFAM: Helix-turn-helix type 3; Cupin 2, conserved barrel; SMART: Helix-turn-helix type 3
YP_005715343.1	TIGRFAM: Formyltetrahydrofolate deformylase; KEGG: smd:Smed_3310 formyltetrahydrofolate deformylase; PFAM: Formyl transferase, N-terminal; Amino acid-binding ACT
YP_005715344.1	KEGG: smd:Smed_3311 glycine cleavage T protein (aminomethyl transferase); PFAM: Glycine cleavage T-protein, N-terminal; Glycine cleavage T-protein, C-terminal barrel
YP_005715345.1	KEGG: smd:Smed_3312 hypothetical protein
YP_005715346.1	KEGG: smd:Smed_3313 ferredoxin; PFAM: Ferredoxin; Oxidoreductase FAD/NAD(P)-binding; Oxidoreductase, FAD-binding domain
YP_005715347.1	KEGG: smd:Smed_3314 hypothetical protein
YP_005715348.1	PFAM: Flavin-containing monooxygenase-like; KEGG: smd:Smed_3315 flavin-containing monooxygenase FMO
YP_005715349.1	KEGG: smd:Smed_3316 glycine cleavage T protein (aminomethyl transferase); PFAM: Glycine cleavage T-protein, N-terminal; Domain of unknown function DUF1989; Glycine cleavage T-protein, C-terminal barrel
YP_005715350.1	PFAM: Amino acid permease domain; KEGG: smd:Smed_3317 amino acid permease-associated region
YP_005715351.1	KEGG: rle:RL0066 putative phosphoketolase; PFAM: Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase, N-terminal; Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase, C-terminal; Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase
YP_005715352.1	PFAM: NAD-dependent epimerase/dehydratase; KEGG: smd:Smed_3319 NAD-dependent epimerase/dehydratase
YP_005715353.1	KEGG: smd:Smed_3320 dihydroxy-acid dehydratase; PFAM: Dihydroxy-acid/6-phosphogluconate dehydratase
YP_005715354.1	KEGG: smd:Smed_3321 GntR domain-containing protein; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: HTH transcriptional regulator, GntR; GntR, C-terminal
YP_005715355.1	PFAM: SMP-30/Gluconolaconase/LRE-like region; KEGG: smd:Smed_3322 SMP-30/gluconolaconase/LRE domain-containing protein
YP_005715356.1	PFAM: Glutathione S-transferase, C-terminal; KEGG: smd:Smed_3323 glutathione S-transferase domain-containing protein
YP_005715357.1	PFAM: ABC transporter-like; Transport-associated OB, type 2; KEGG: smd:Smed_3324 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_005715358.1	PFAM: Oxidoreductase, N-terminal; Oxidoreductase, C-terminal; KEGG: smd:Smed_3325 oxidoreductase domain-containing protein
YP_005715359.1	PFAM: Oxidoreductase, N-terminal; Oxidoreductase, C-terminal; KEGG: smd:Smed_3326 oxidoreductase domain-containing protein
YP_005715360.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_3327 binding-protein-dependent transport systems inner membrane component
YP_005715361.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_3328 binding-protein-dependent transport systems inner membrane component
YP_005715362.1	PFAM: Bacterial extracellular solute-binding, family 1; KEGG: smd:Smed_3329 extracellular solute-binding protein
YP_005715363.1	PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: smd:Smed_3330 TetR family transcriptional regulator
YP_005715364.1	PFAM: Oxidoreductase, N-terminal; Oxidoreductase, C-terminal; KEGG: smd:Smed_3331 oxidoreductase domain-containing protein
YP_005715365.1	PFAM: Protein of unknown function DUF993; KEGG: rhi:NGR_b17960 hypothetical protein
YP_005715366.1	PFAM: Mandelate racemase/muconate lactonizing enzyme, C-terminal; KEGG: smd:Smed_3333 hypothetical protein
YP_005715367.1	PFAM: Xylose isomerase, TIM barrel domain; KEGG: smd:Smed_3334 xylose isomerase domain-containing protein
YP_005715368.1	PFAM: Oxidoreductase, N-terminal; Oxidoreductase, C-terminal; KEGG: smd:Smed_3335 oxidoreductase domain-containing protein
YP_005715369.1	TIGRFAM: ATPase, P-type, heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; ATPase, P-type, heavy metal translocating; KEGG: smd:Smed_3336 heavy metal translocating P-type ATPase; PFAM: ATPase, P-type, ATPase-associated domain; Heavy metal transport/detoxification protein; Haloacid dehalogenase-like hydrolase
YP_005715370.1	PFAM: Transposase, IS4-like; KEGG: ret:RHE_PD00041 insertion sequence transposase protein
YP_005715371.1	PFAM: ABC transporter-like; KEGG: smd:Smed_3337 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_005715372.1	PFAM: ABC transporter permease; KEGG: smd:Smed_3338 inner-membrane translocator
YP_005715373.1	PFAM: ABC transporter permease; KEGG: smd:Smed_3339 inner-membrane translocator
YP_005715374.1	KEGG: smd:Smed_3340 cytidine deaminase; TIGRFAM: Cytidine deaminase, homotetrameric; PFAM: CMP/dCMP deaminase, zinc-binding
YP_005715375.1	TIGRFAM: Putative purine nucleotide phosphorylase; Inosine guanosine/xanthosine phosphorylase; KEGG: smd:Smed_3341 purine nucleoside phosphorylase; PFAM: Nucleoside phosphorylase domain
YP_005715376.1	KEGG: smd:Smed_3342 thymidine phosphorylase; PFAM: Glycosyl transferase, family 3; Glycosyl transferase, family 3, N-terminal; Pyrimidine nucleoside phosphorylase, C-terminal; TIGRFAM: Thymidine phosphorylase; Pyrimidine-nucleoside phosphorylase, bacterial/eukaryotic; HAMAP: Thymidine phosphorylase; SMART: Pyrimidine nucleoside phosphorylase, C-terminal
YP_005715377.1	KEGG: smd:Smed_3343 uracil phosphoribosyltransferase; TIGRFAM: Uracil phosphoribosyl transferase; PFAM: Phosphoribosyltransferase
YP_005715378.1	PFAM: Adenosine/AMP deaminase; TIGRFAM: Adenosine deaminase; HAMAP: Adenosine deaminase; KEGG: rhi:NGR_c34590 adenosine deaminase
YP_005715379.1	PFAM: Metalloenzyme; TIGRFAM: Phosphopentomutase; HAMAP: Phosphopentomutase; KEGG: smd:Smed_3345 phosphopentomutase
YP_005715380.1	KEGG: smd:Smed_3346 hypothetical protein
YP_005715381.1	PFAM: TadE-like; KEGG: smd:Smed_3347 TadE family protein
YP_005715382.1	KEGG: smd:Smed_3348 hypothetical protein
YP_005715383.1	PFAM: Flp/Fap pilin component; KEGG: smd:Smed_3349 Flp/Fap pilin component
YP_005715384.1	PFAM: Peptidase A24A, prepilin type IV; KEGG: smd:Smed_3350 peptidase A24A prepilin type IV
YP_005715385.1	TIGRFAM: Pilus assembly, Flp-type CpaB; PFAM: SAF domain; KEGG: smd:Smed_3351 SAF domain-containing protein; SMART: SAF domain
YP_005715386.1	PFAM: Type II/III secretion system; Transport-associated; KEGG: smd:Smed_3352 type II and III secretion system protein
YP_005715387.1	KEGG: smd:Smed_3353 pilus biogenesis lipoprotein CpaD; TIGRFAM: Pilus biogenesis CpaD; PFAM: Pilus biogenesis CpaD-related
YP_005715388.1	KEGG: smd:Smed_3354 response regulator receiver protein
YP_005715389.1	PFAM: Type II secretion system protein E; KEGG: smd:Smed_3355 type II secretion system protein E
YP_005715390.1	PFAM: Type II secretion system F domain; KEGG: smd:Smed_3356 type II secretion system protein
YP_005715391.1	PFAM: Type II secretion system F domain; KEGG: smd:Smed_3357 type II secretion system protein
YP_005715392.1	PFAM: Transposase, IS4-like; KEGG: rhi:NGR_b15530 putative transposase Y4zB-like protein
YP_005715393.1	KEGG: smd:Smed_3358 tetratricopeptide TPR_4
YP_005715394.1	PFAM: Peptidase M17, leucyl aminopeptidase, C-terminal; Peptidase M17, leucyl aminopeptidase, N-terminal; KEGG: smd:Smed_3359 leucyl aminopeptidase
YP_005715395.1	KEGG: rhi:NGR_c34760 putative transcriptional regulator, MarR family; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR
YP_005715396.1	PFAM: NLP/P60; KEGG: smd:Smed_3361 NLP/P60 protein
YP_005715397.1	KEGG: smd:Smed_3362 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding
YP_005715398.1	PFAM: ABC transporter-like; Oligopeptide/dipeptide ABC transporter, C-terminal; KEGG: smd:Smed_3363 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_005715399.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_3364 binding-protein-dependent transport systems inner membrane component
YP_005715400.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_3365 binding-protein-dependent transport systems inner membrane component
YP_005715401.1	PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: smd:Smed_3366 extracellular solute-binding protein
YP_005715402.1	PFAM: Peptidase M74, penicillin-insensitive murein endopeptidase; KEGG: smd:Smed_3367 penicillin-insensitive murein endopeptidase
YP_005715403.1	KEGG: smd:Smed_3368 methylglyoxal synthase; PFAM: Methylglyoxal synthase-like domain; TIGRFAM: Methylglyoxal synthase; HAMAP: Methylglyoxal synthase; SMART: Methylglyoxal synthase-like domain
YP_005715404.1	PFAM: Glucokinase; TIGRFAM: Glucokinase; HAMAP: Glucokinase; KEGG: smd:Smed_3369 glucokinase
YP_005715405.1	PFAM: ABC transporter-like; ABC transporter, transmembrane domain; KEGG: smd:Smed_3370 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_005715406.1	PFAM: Dihydrodipicolinate reductase, C-terminal; Dihydrodipicolinate reductase, N-terminal; TIGRFAM: Dihydrodipicolinate reductase, bacterial/plant; HAMAP: Dihydrodipicolinate reductase, bacterial/plant; KEGG: smd:Smed_3371 dihydrodipicolinate reductase
YP_005715407.1	KEGG: smd:Smed_3372 phosphoglyceromutase; PFAM: Histidine phosphatase superfamily, clade-1; TIGRFAM: Phosphoglycerate mutase 1; HAMAP: Phosphoglycerate mutase 1; SMART: Histidine phosphatase superfamily, clade-1
YP_005715408.1	TIGRFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding; PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding; HTH transcriptional regulator, AraC; KEGG: smd:Smed_3373 methylated-DNA--protein-cysteine methyltransferase; SMART: Helix-turn-helix, AraC type, DNA binding domain
YP_005715409.1	PFAM: Protein of unknown function DUF2244, transmembrane; KEGG: smd:Smed_3374 hypothetical protein
YP_005715410.1	SMART: HhH-GPD domain; TIGRFAM: Endonuclease III/Nth; KEGG: rhi:NGR_c34920 putative endonuclease III protein; PFAM: HhH-GPD domain; Endonuclease III-like, iron-sulphur cluster loop motif
YP_005715411.1	PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: smd:Smed_3376 TetR family transcriptional regulator
YP_005715412.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: rhi:NGR_c34940 putative glyoxalase/bleomycin resistance protein/dioxygenase
YP_005715413.1	KEGG: smd:Smed_3378 ribokinase-like domain-containing protein; PFAM: Carbohydrate/purine kinase
YP_005715414.1	PFAM: Shikimate kinase; KEGG: rlt:Rleg2_1977 hypothetical protein
YP_005715415.1	KEGG: smd:Smed_3379 hypothetical protein; PFAM: Protein of unknown function DUF1058; SMART: SH3-like domain, bacterial
YP_005715416.1	KEGG: smd:Smed_3380 glyoxylate reductase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
YP_005715417.1	TIGRFAM: DNA polymerase 1; PFAM: DNA-directed DNA polymerase, family A, palm domain; 3'-5' exonuclease; 5'-3' exonuclease, alpha-helical arch, N-terminal; 5'-3' exonuclease, SAM-fold domain; KEGG: smd:Smed_3381 DNA polymerase I; SMART: 5'-3' exonuclease, N-terminal; DNA-directed DNA polymerase, family A, palm domain; Helix-hairpin-helix DNA-binding motif, class 1; 3'-5' exonuclease; Helix-hairpin-helix motif, class 2
YP_005715418.1	KEGG: smd:Smed_3382 MarR family transcriptional regulator; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR
YP_005715419.1	KEGG: smd:Smed_3383 hypothetical protein; PFAM: Peptidase M20; Peptidase M20, dimerisation
YP_005715420.1	KEGG: smd:Smed_3384 hypothetical protein
YP_005715421.1	KEGG: smd:Smed_3385 putative signal peptide protein
YP_005715422.1	PFAM: Drug/metabolite transporter; KEGG: smd:Smed_3386 hypothetical protein
YP_005715423.1	KEGG: smd:Smed_3388 1A family penicillin-binding protein; TIGRFAM: Penicillin-binding protein 1A; PFAM: Glycosyl transferase, family 51; Penicillin-binding protein, transpeptidase
YP_005715424.1	TIGRFAM: Chaperone DnaK; HAMAP: Chaperone DnaK; KEGG: smd:Smed_3389 molecular chaperone DnaK; PFAM: Heat shock protein 70
YP_005715425.1	SMART: Heat shock protein DnaJ, N-terminal; TIGRFAM: Chaperone DnaJ; KEGG: rhi:NGR_c35060 chaperone protein DnaJ; HAMAP: Chaperone DnaJ; PFAM: Chaperone DnaJ, C-terminal; Heat shock protein DnaJ, N-terminal; Heat shock protein DnaJ, cysteine-rich domain
YP_005715426.1	PFAM: Protein of unknown function DUF2182, transmembrane, metal-binding; KEGG: smd:Smed_3391 hypothetical protein
YP_005715427.1	PFAM: Protein of unknown function DUF1326; KEGG: smd:Smed_3392 hypothetical protein
YP_005715428.1	PFAM: Phosphate transporter; KEGG: smd:Smed_3393 phosphate transporter
YP_005715429.1	PFAM: Putitive phosphate transport regulator; KEGG: smd:Smed_3394 hypothetical protein
YP_005715430.1	SMART: ATPase, AAA+ type, core; TIGRFAM: DNA-binding, RecF; KEGG: smd:Smed_3395 recombination protein F; HAMAP: DNA-binding, RecF; PFAM: RecF/RecN/SMC
YP_005715431.1	PFAM: UBA/THIF-type NAD/FAD binding fold; MoeZ/MoeB; KEGG: smd:Smed_3396 molybdopterin biosynthesis protein MoeB
YP_005715432.1	PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: rlg:Rleg_4410 GCN5-related N-acetyltransferase
YP_005715433.1	PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; Transcription regulator MAATS, C-terminal; KEGG: smd:Smed_3397 TetR family transcriptional regulator
YP_005715434.1	KEGG: smd:Smed_3398 hydrophobe/amphiphile efflux-1 (HAE1) family protein; TIGRFAM: Hydrophobe/amphiphile efflux-1 HAE1; PFAM: Acriflavin resistance protein
YP_005715435.1	KEGG: smd:Smed_3399 RND family efflux transporter MFP subunit; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD
YP_005715436.1	PFAM: ABC transporter-like; Transport-associated OB, type 2; KEGG: smd:Smed_3400 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_005715437.1	PFAM: Oxidoreductase, N-terminal; KEGG: smd:Smed_3401 oxidoreductase domain-containing protein
YP_005715438.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_3402 binding-protein-dependent transport systems inner membrane component
YP_005715439.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_3403 binding-protein-dependent transport systems inner membrane component
YP_005715440.1	PFAM: Bacterial extracellular solute-binding, family 1; KEGG: smd:Smed_3405 extracellular solute-binding protein
YP_005715441.1	PFAM: Sugar isomerase (SIS); KEGG: smd:Smed_3406 N-acetylmuramic acid-6-phosphate etherase
YP_005715442.1	PFAM: ATPase, BadF/BadG/BcrA/BcrD type; KEGG: smd:Smed_3407 ATPase BadF/BadG/BcrA/BcrD type
YP_005715443.1	KEGG: rhi:NGR_c35320 putative transcriptional regulator, GntR family; PFAM: UbiC transcription regulator-associated; HTH transcriptional regulator, GntR; SMART: UbiC transcription regulator-associated; HTH transcriptional regulator, GntR
YP_005715444.1	KEGG: smd:Smed_3409 glutamine--fructose-6-phosphate transaminase (isomerizing); PFAM: Sugar isomerase (SIS)
YP_005715445.1	TIGRFAM: N-acetylglucosamine-6-phosphate deacetylase; KEGG: smd:Smed_3410 N-acetylglucosamine-6-phosphate deacetylase; PFAM: Amidohydrolase 1
YP_005715446.1	KEGG: smd:Smed_3411 CutC family protein; HAMAP: Copper homeostasis protein cutC; PFAM: CutC
YP_005715447.1	KEGG: smd:Smed_3412 ROK family protein; PFAM: ROK
YP_005715448.1	PFAM: Amidase; KEGG: rhi:NGR_c35370 hypothetical protein
YP_005715449.1	PFAM: Uncharacterised protein family CysZ; KEGG: smd:Smed_3414 CysZ-like protein
YP_005715450.1	KEGG: smd:Smed_3415 hypothetical protein; HAMAP: SlyX; PFAM: SlyX
YP_005715451.1	PFAM: Basic membrane lipoprotein; KEGG: smd:Smed_3416 basic membrane lipoprotein
YP_005715452.1	PFAM: Peptide methionine sulphoxide reductase MsrA; TIGRFAM: Peptide methionine sulphoxide reductase MsrA; HAMAP: Peptide methionine sulphoxide reductase MsrA; KEGG: smd:Smed_3417 methionine sulfoxide reductase A
YP_005715453.1	KEGG: smd:Smed_3418 putative signal peptide protein
YP_005715454.1	KEGG: oan:Oant_0621 HicB family protein
YP_005715455.1	KEGG: pde:Pden_1497 helix-turn-helix domain-containing protein; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain
YP_005715456.1	PFAM: Major facilitator superfamily MFS-1; KEGG: pde:Pden_1496 major facilitator transporter
YP_005715457.1	PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: pde:Pden_1495 TonB-dependent receptor
YP_005715458.1	PFAM: Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal; KEGG: pde:Pden_1494 monooxygenase, FAD-binding
YP_005715459.1	PFAM: Major facilitator superfamily MFS-1; KEGG: rlg:Rleg_2004 major facilitator superfamily MFS_1
YP_005715460.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: smd:Smed_3422 LysR family transcriptional regulator
YP_005715461.1	PFAM: Transport-associated; KEGG: smd:Smed_3423 transport-associated
YP_005715462.1	PFAM: Auxin efflux carrier; KEGG: smd:Smed_3424 auxin efflux carrier
YP_005715463.1	TIGRFAM: Branched-chain amino acid aminotransferase II; KEGG: smd:Smed_3425 branched-chain amino acid aminotransferase; PFAM: Aminotransferase, class IV
YP_005715464.1	PFAM: Cytochrome c, class I; KEGG: smd:Smed_3426 cytochrome c class I
YP_005715465.1	PFAM: Acylneuraminate cytidylyltransferase; TIGRFAM: 3-deoxy-D-manno-octulosonate cytidylyltransferase; HAMAP: 3-deoxy-D-manno-octulosonate cytidylyltransferase; KEGG: smd:Smed_3427 3-deoxy-manno-octulosonate cytidylyltransferase
YP_005715466.1	KEGG: smd:Smed_3428 prephenate dehydratase; PFAM: Prephenate dehydratase
YP_005715467.1	PFAM: Protein of unknown function DUF1127; KEGG: smd:Smed_3429 hypothetical protein
YP_005715468.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: rhi:NGR_c35540 putative glyoxalase/bleomycin resistance protein/dioxygenase
YP_005715469.1	KEGG: rhi:NGR_c35550 putative transcriptional regulator
YP_005715470.1	KEGG: smd:Smed_3430 NUDIX hydrolase; PFAM: NADH pyrophosphatase-like, N-terminal; Zinc ribbon, NADH pyrophosphatase; NUDIX hydrolase domain
YP_005715471.1	PFAM: Histidine triad (HIT) protein; KEGG: smd:Smed_3431 histidine triad (HIT) protein
YP_005715472.1	TIGRFAM: DNA polymerase III, subunit gamma/ tau; PFAM: DNA polymerase III, gamma subunit, domain III; DNA polymerase III, subunit gamma/ tau, C-terminal; ATPase, AAA-type, core; KEGG: smd:Smed_3432 DNA polymerase III subunits gamma and tau; SMART: ATPase, AAA+ type, core
YP_005715473.1	TIGRFAM: Uncharacterised protein family UPF0133; HAMAP: Uncharacterised protein family UPF0133; KEGG: smd:Smed_3433 hypothetical protein; PFAM: Uncharacterised protein family UPF0133
YP_005715474.1	PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: smd:Smed_3434 lysine exporter protein LysE/YggA
YP_005715475.1	TIGRFAM: RecR protein; HAMAP: RecR protein; KEGG: smd:Smed_3435 recombination protein RecR; SMART: Toprim domain
YP_005715476.1	KEGG: smd:Smed_3436 lytic murein transglycosylase; TIGRFAM: Lytic murein transglycosylase; PFAM: Peptidoglycan binding-like
YP_005715477.1	PFAM: Major facilitator superfamily, enterobactin exporter EntS; KEGG: smd:Smed_3437 protein of unknown function DUF894 DitE
YP_005715478.1	KEGG: smd:Smed_3438 hypothetical protein; HAMAP: Ribosome maturation factor RimP; PFAM: Ribosome maturation factor RimP
YP_005715479.1	TIGRFAM: Transcription termination factor NusA; Transcription termination factor NusA, C-terminal duplication; PFAM: Transcription factor NusA, N-terminal; Ribosomal protein S1, RNA-binding domain; K Homology, type 1, subgroup; KEGG: smd:Smed_3439 transcription elongation factor NusA; SMART: RNA-binding domain, S1; K Homology
YP_005715480.1	PFAM: Protein of unknown function DUF448; KEGG: smd:Smed_3440 hypothetical protein
YP_005715481.1	KEGG: smd:Smed_3441 translation initiation factor IF-2; TIGRFAM: Translation initiation factor aIF-2, bacterial-like; Small GTP-binding protein; PFAM: Protein synthesis factor, GTP-binding; Translation initiation factor IF-2, N-terminal; Initiation factor 2 associated region, bacterial; Translation elongation factor EFTu/EF1A, domain 2
YP_005715482.1	TIGRFAM: Ribosome-binding factor A; HAMAP: Ribosome-binding factor A; KEGG: rhi:NGR_c35690 ribosome-binding factor A; PFAM: Ribosome-binding factor A
YP_005715483.1	TIGRFAM: tRNA pseudouridine synthase II, TruB; HAMAP: tRNA pseudouridine synthase II, TruB; KEGG: smd:Smed_3443 tRNA pseudouridine synthase B; PFAM: Pseudouridine synthase II
YP_005715484.1	KEGG: smd:Smed_3444 signal transduction histidine kinase; PFAM: Signal transduction histidine kinase, HWE region; SMART: Signal transduction histidine kinase, HWE region
YP_005715485.1	KEGG: smd:Smed_3445 30S ribosomal protein S15; TIGRFAM: Ribosomal protein S15, bacterial-type; PFAM: Ribosomal protein S15
YP_005715486.1	KEGG: rhi:NGR_c35730 polynucleotide phosphorylase/polyadenylase; PFAM: Exoribonuclease, phosphorolytic domain 1; Exoribonuclease, phosphorolytic domain 2; Polynucleotide phosphorylase, phosphorolytic RNA-binding, bacterial/organelle-type; K Homology, type 1, subgroup; Ribosomal protein S1, RNA-binding domain; TIGRFAM: Polyribonucleotide nucleotidyltransferase; HAMAP: Polyribonucleotide nucleotidyltransferase; SMART: RNA-binding domain, S1; K Homology
YP_005715487.1	PFAM: Methyltransferase small; KEGG: smd:Smed_3447 methyltransferase small
YP_005715488.1	KEGG: smd:Smed_3448 enoyl-(acyl carrier protein) reductase; PFAM: Short-chain dehydrogenase/reductase SDR
YP_005715489.1	PFAM: Beta-ketoacyl synthase, N-terminal; Beta-ketoacyl synthase, C-terminal; KEGG: smd:Smed_3449 3-oxoacyl-(acyl carrier protein) synthase I; SMART: Polyketide synthase, beta-ketoacyl synthase domain
YP_005715490.1	PFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ; TIGRFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA; HAMAP: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA; KEGG: smd:Smed_3450 3-hydroxydecanoyl-(acyl carrier protein) dehydratase
YP_005715491.1	PFAM: Ferric-uptake regulator; KEGG: smd:Smed_3451 ferric uptake regulator family protein
YP_005715492.1	PFAM: Uncharacterised protein family UPF0126; KEGG: smd:Smed_3452 hypothetical protein
YP_005715493.1	PFAM: Domain of unknown function DUF218; KEGG: smd:Smed_3453 hypothetical protein
YP_005715494.1	KEGG: smd:Smed_3455 hypothetical protein; TIGRFAM: Conserved hypothetical protein FYDLN acid; PFAM: Conserved hypothetical protein FYDLN acid
YP_005715495.1	PFAM: Enolpyruvate transferase domain; TIGRFAM: 3-phosphoshikimate 1-carboxyvinyltransferase; HAMAP: 3-phosphoshikimate 1-carboxyvinyltransferase; KEGG: smd:Smed_3456 3-phosphoshikimate 1-carboxyvinyltransferase
YP_005715496.1	PFAM: Cytidylate kinase domain; TIGRFAM: Cytidylate kinase; HAMAP: Cytidylate kinase; KEGG: smd:Smed_3457 cytidylate kinase
YP_005715497.1	TIGRFAM: Ribosomal S1 synthesis/modification protein; PFAM: Ribosomal protein S1, RNA-binding domain; KEGG: smd:Smed_3458 30S ribosomal protein S1; SMART: RNA-binding domain, S1
YP_005715498.1	KEGG: smd:Smed_3459 hypothetical protein
YP_005715499.1	KEGG: smd:Smed_3460 hypothetical protein
YP_005715500.1	PFAM: BA14K-like; KEGG: smd:Smed_3461 hypothetical protein
YP_005715501.1	KEGG: smd:Smed_3462 putative adenylate/guanylate cyclase; PFAM: Adenylyl cyclase class-3/4/guanylyl cyclase; HAMP linker domain; SMART: Adenylyl cyclase class-3/4/guanylyl cyclase; HAMP linker domain
YP_005715502.1	KEGG: rhi:NGR_c35930 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding
YP_005715503.1	KEGG: smd:Smed_3463 hypothetical protein
YP_005715504.1	KEGG: smd:Smed_3464 3'-5' exonuclease; PFAM: 3'-5' exonuclease; SMART: 3'-5' exonuclease
YP_005715505.1	PFAM: Integrase, catalytic core; KEGG: rpt:Rpal_4342 integrase catalytic region
YP_005715508.1	PFAM: Excinuclease ABC, C subunit, N-terminal; KEGG: rlg:Rleg_3124 excinuclease ABC C subunit domain protein
YP_005715509.1	TIGRFAM: Selenoprotein, Rdx type; KEGG: smd:Smed_3465 putative selenoprotein
YP_005715510.1	PFAM: Uncharacterised protein family YphA; KEGG: smd:Smed_3466 DoxX family protein
YP_005715511.1	PFAM: Transcription elongation factor, GreA/GreB, C-terminal; KEGG: smd:Smed_3467 nucleoside diphosphate kinase regulator
YP_005715512.1	KEGG: rhi:NGR_c36050 hypothetical protein
YP_005715513.1	TIGRFAM: GTP-binding protein LepA; Small GTP-binding protein; HAMAP: GTP-binding protein LepA; KEGG: smd:Smed_3469 GTP-binding protein LepA; PFAM: GTP-binding protein LepA, C-terminal; Protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, domain 2; Translation elongation factor EFG/EF2, C-terminal
YP_005715514.1	PFAM: Major facilitator superfamily MFS-1; KEGG: smd:Smed_3470 major facilitator transporter
YP_005715515.1	KEGG: smd:Smed_3471 XRE family transcriptional regulator; PFAM: Helix-turn-helix type 3; Cupin 2, conserved barrel; SMART: Helix-turn-helix type 3
YP_005715516.1	PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: smd:Smed_3472 GCN5-related N-acetyltransferase
YP_005715517.1	PFAM: Exopolysaccharide synthesis, ExoD; KEGG: smd:Smed_3473 exopolysaccharide synthesis ExoD
YP_005715518.1	PFAM: Outer membrane protein, OmpA/MotB, C-terminal; Rickettsia 17kDa surface antigen; KEGG: smd:Smed_3475 OmpA/MotB domain-containing protein
YP_005715519.1	TIGRFAM: Lysine-2,3-aminomutase-related; Conserved hyprothetical protein CHP00238, KamA; KEGG: smd:Smed_3476 lysine 2,3-aminomutase YodO family protein; PFAM: Radical SAM
YP_005715520.1	TIGRFAM: Lysyl-tRNA synthetase-related; KEGG: smd:Smed_3477 lysine--tRNA ligase; PFAM: Aminoacyl-tRNA synthetase, class II (D/K/N)
YP_005715521.1	SMART: Elongation factor P, C-terminal; TIGRFAM: Translation elongation factor P; KEGG: smd:Smed_3478 elongation factor P; HAMAP: Translation elongation factor P; PFAM: Elongation factor P, C-terminal; Translation elongation factor P/YeiP, central; Translation elongation factor, KOW-like
YP_005715522.1	KEGG: smd:Smed_3479 cyclopropane-fatty-acyl-phospholipid synthase; PFAM: Cyclopropane-fatty-acyl-phospholipid/mycolic acid synthase
YP_005715523.1	PFAM: Rubrerythrin; Domain of unknown function DUF125, transmembrane; KEGG: smd:Smed_3480 rubrerythrin
YP_005715524.1	PFAM: Transglutaminase-like cysteine peptidase, predicted; KEGG: smd:Smed_3481 transglutaminase family protein cysteine peptidase BTLCP
YP_005715525.1	PFAM: Alpha/beta hydrolase fold-1; KEGG: smd:Smed_3482 hypothetical protein
YP_005715526.1	PFAM: Translation initiation factor 3, C-terminal; Translation initiation factor 3, N-terminal; manually curated; TIGRFAM: Translation initiation factor 3; KEGG: rle:RL0266 translation initiation factor IF-3; HAMAP: Translation initiation factor 3
YP_005715527.1	TIGRFAM: Ribosomal protein L35, non-mitochondrial; HAMAP: Ribosomal protein L35, non-mitochondrial; KEGG: smd:Smed_3484 50S ribosomal protein L35; PFAM: Ribosomal protein L35
YP_005715528.1	TIGRFAM: Ribosomal protein L20; HAMAP: Ribosomal protein L20; KEGG: smd:Smed_3485 50S ribosomal protein L20; PFAM: Ribosomal protein L20
YP_005715529.1	TIGRFAM: Phenylalanyl-tRNA synthetase, class IIc, alpha subunit; HAMAP: Phenylalanyl-tRNA synthetase alpha chain 1, bacterial; KEGG: smd:Smed_3486 phenylalanyl-tRNA synthetase subunit alpha; PFAM: Phenylalanyl-tRNA synthetase; Phenylalanyl-tRNA synthetase, class II, N-terminal
YP_005715530.1	TIGRFAM: Phenylalanyl-tRNA synthetase, class IIc, beta subunit, bacterial; KEGG: smd:Smed_3487 phenylalanyl-tRNA synthetase subunit beta; HAMAP: Phenylalanyl-tRNA synthetase, class IIc, beta subunit, bacterial
YP_005715531.1	KEGG: smd:Smed_3488 hypothetical protein
YP_005715532.1	KEGG: smd:Smed_3489 aldo/keto reductase; PFAM: NADP-dependent oxidoreductase domain
YP_005715533.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: smd:Smed_3490 LysR family transcriptional regulator
YP_005715534.1	PFAM: Protein of unknown function DUF892; KEGG: smd:Smed_3491 hypothetical protein
YP_005715535.1	PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: smd:Smed_3492 short chain dehydrogenase; SMART: Polyketide synthase/Fatty acid synthase, KR
YP_005715536.1	KEGG: smd:Smed_3493 hypothetical protein
YP_005715537.1	PFAM: NADP-dependent oxidoreductase domain; KEGG: smd:Smed_3494 aldo/keto reductase
YP_005715538.1	KEGG: smd:Smed_3495 oxidoreductase domain-containing protein; PFAM: Oxidoreductase, N-terminal; Oxidoreductase, C-terminal
YP_005715539.1	KEGG: smd:Smed_3496 hypothetical protein
YP_005715540.1	manually curated; PFAM: Helix-turn-helix type 3; KEGG: smd:Smed_3497 XRE family transcriptional regulator; SMART: Helix-turn-helix type 3
YP_005715541.1	PFAM: Exonuclease VII, large subunit, C-terminal; Nucleic acid binding, OB-fold, tRNA/helicase-type; TIGRFAM: Exonuclease VII, large subunit; HAMAP: Exonuclease VII, large subunit; KEGG: smd:Smed_3498 exodeoxyribonuclease VII large subunit
YP_005715542.1	PFAM: Flavodoxin-like fold; KEGG: smd:Smed_3499 NAD(P)H dehydrogenase (quinone)
YP_005715543.1	KEGG: smd:Smed_3500 MarR family transcriptional regulator; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR
YP_005715544.1	PFAM: Drug/metabolite transporter; KEGG: smd:Smed_3501 hypothetical protein
YP_005715545.1	PFAM: Peptidase M29, aminopeptidase II; KEGG: smd:Smed_3504 peptidase M29 aminopeptidase II
YP_005715546.1	PFAM: Glutathione S-transferase, N-terminal; Glutathione S-transferase, C-terminal; KEGG: smd:Smed_3505 glutathione S-transferase domain-containing protein
YP_005715547.1	PFAM: HTH transcriptional regulator, MarR; KEGG: smd:Smed_3506 MarR family transcriptional regulator
YP_005715548.1	KEGG: smd:Smed_3507 YbaK/EbsC protein; TIGRFAM: Prolyl-tRNA editing protein, YbaK/EbsC; PFAM: YbaK/aminoacyl-tRNA synthetase-associated domain
YP_005715549.1	KEGG: smd:Smed_3508 arsenate reductase and related; TIGRFAM: Transcriptional regulator Spx/MgsR; PFAM: Arsenate reductase-like
YP_005715550.1	KEGG: smd:Smed_3509 aromatic amino acid aminotransferase; PFAM: Aminotransferase, class I/classII
YP_005715551.1	PFAM: Succinylglutamate desuccinylase/aspartoacylase; KEGG: smd:Smed_3510 succinylglutamate desuccinylase/aspartoacylase
YP_005715552.1	KEGG: rhi:NGR_c36490 hypothetical protein
YP_005715553.1	KEGG: rhi:NGR_c36510 hypothetical protein
YP_005715554.1	KEGG: mes:Meso_4551 prevent-host-death family protein; TIGRFAM: Prevent-host-death protein; PFAM: Prevent-host-death protein
YP_005715555.1	PFAM: PilT protein, N-terminal; KEGG: mes:Meso_4552 PilT protein-like
YP_005715556.1	PFAM: GMP synthase, C-terminal; Glutamine amidotransferase class-I, C-terminal; tRNA-specific 2-thiouridylase; TIGRFAM: GMP synthase, C-terminal; GMP synthase, N-terminal; HAMAP: GMP synthase; KEGG: smd:Smed_3517 GMP synthase
YP_005715557.1	KEGG: smd:Smed_3518 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase; TIGRFAM: 5-methylthioadenosine/S-adenosylhomocysteine nucleosidase, putative; PFAM: Nucleoside phosphorylase domain
YP_005715558.1	KEGG: smd:Smed_3519 thioesterase superfamily protein; TIGRFAM: Phenylacetic acid degradation-related protein; PFAM: Thioesterase superfamily
YP_005715559.1	PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: smd:Smed_3521 GCN5-related N-acetyltransferase
YP_005715560.1	PFAM: Uncharacterised conserved protein UCP028101; KEGG: smd:Smed_3522 hypothetical protein
YP_005715561.1	PFAM: Mg2+ transporter protein, CorA-like; KEGG: rhi:NGR_c36570 magnesium/cobalt transport protein, CorA
YP_005715562.1	PFAM: Peptidase M75, Imelysin; KEGG: smd:Smed_3527 putative signal peptide protein
YP_005715563.1	PFAM: Protein of unknown function DUF1111; KEGG: smd:Smed_3528 hypothetical protein
YP_005715564.1	PFAM: Peptidase M75, Imelysin; KEGG: smd:Smed_3529 putative iron-regulated protein
YP_005715565.1	PFAM: Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p; KEGG: smd:Smed_3530 Fmu (Sun) domain-containing protein
YP_005715566.1	KEGG: smd:Smed_3531 rare lipoprotein A; TIGRFAM: Rare lipoprotein A, bacterial; PFAM: Barwin-related endoglucanase
YP_005715567.1	PFAM: NAD-dependent epimerase/dehydratase; KEGG: smd:Smed_3533 NAD-dependent epimerase/dehydratase
YP_005715568.1	PFAM: Domain of unknown function DUF1730; 4Fe-4S binding domain; KEGG: smd:Smed_3534 hypothetical protein
YP_005715569.1	KEGG: smd:Smed_3535 glutathione S-transferase domain-containing protein; manually curated; PFAM: Glutathione S-transferase, C-terminal
YP_005715570.1	TIGRFAM: Bacitracin resistance protein BacA; HAMAP: Bacitracin resistance protein BacA; KEGG: smd:Smed_3536 undecaprenyl pyrophosphate phosphatase; PFAM: Bacitracin resistance protein BacA
YP_005715571.1	KEGG: smd:Smed_3537 putative signal peptide protein
YP_005715572.1	PFAM: NAD-dependent epimerase/dehydratase; KEGG: smd:Smed_3538 NADH dehydrogenase (ubiquinone)
YP_005715573.1	PFAM: Protein of unknown function DUF1330; KEGG: rhi:NGR_c36690 hypothetical protein
YP_005715574.1	SMART: Orotidine 5'-phosphate decarboxylase domain; TIGRFAM: Orotidine 5'-phosphate decarboxylase; KEGG: smd:Smed_3540 orotidine 5'-phosphate decarboxylase; PFAM: Orotidine 5'-phosphate decarboxylase domain
YP_005715575.1	PFAM: Histidine phosphatase superfamily, clade-1; KEGG: smd:Smed_3541 phosphoglycerate mutase
YP_005715576.1	PFAM: Methyltransferase type 11; KEGG: smd:Smed_3542 hypothetical protein
YP_005715577.1	SMART: DNA polymerase III, beta chain; TIGRFAM: DNA polymerase III, beta chain; KEGG: smd:Smed_3543 DNA polymerase III subunit beta; PFAM: DNA polymerase III, beta chain, central; DNA polymerase III, beta chain, N-terminal; DNA polymerase III, beta chain, C-terminal
YP_005715578.1	TIGRFAM: Uncharacterised protein family UPF0011; HAMAP: Ribosomal RNA small subunit methyltransferase I; KEGG: smd:Smed_3544 uroporphyrin-III C/tetrapyrrole methyltransferase; PFAM: Tetrapyrrole methylase
YP_005715579.1	TIGRFAM: Uncharacterised protein family UPF0102; HAMAP: Uncharacterised protein family UPF0102; KEGG: rhi:NGR_c36770 hypothetical protein; PFAM: Uncharacterised protein family UPF0102
YP_005715580.1	PFAM: Prokaryotic glutathione synthetase, ATP-binding; Prokaryotic glutathione synthetase, N-terminal; TIGRFAM: Glutathione synthetase, prokaryotic; HAMAP: Glutathione synthetase, prokaryotic; KEGG: smd:Smed_3546 glutathione synthetase
YP_005715581.1	TIGRFAM: Mg chelatase-related protein; PFAM: Magnesium chelatase, ChlI subunit; KEGG: smd:Smed_3547 Mg chelatase, subunit ChlI; SMART: ATPase, AAA+ type, core
YP_005715582.1	TIGRFAM: Cysteine synthase A; Cysteine synthase K/M; KEGG: smd:Smed_3549 cysteine synthase A; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit
YP_005715583.1	PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: ara:Arad_0553 amino acid efflux protein
YP_005715584.1	PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: smd:Smed_3551 lysine exporter protein LysE/YggA
YP_005715585.1	PFAM: Drug/metabolite transporter; KEGG: smd:Smed_3552 hypothetical protein
YP_005715586.1	KEGG: smd:Smed_3553 AsnC family transcriptional regulator; PFAM: Transcription regulator AsnC-type, C-terminal; SMART: Transcription regulator AsnC-type
YP_005715587.1	KEGG: smd:Smed_3554 deoxyuridine 5'-triphosphate nucleotidohydrolase; manually curated; TIGRFAM: DeoxyUTP pyrophosphatase; PFAM: DeoxyUTP pyrophosphatase domain; HAMAP: DeoxyUTP pyrophosphatase
YP_005715588.1	KEGG: smd:Smed_3555 peptide chain release factor 3; TIGRFAM: Peptide chain release factor 3; Small GTP-binding protein; PFAM: Protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, domain 2
YP_005715589.1	PFAM: Drug/metabolite transporter; KEGG: rhi:NGR_c36950 putative transmembrane protein
YP_005715590.1	KEGG: smd:Smed_3557 AraC family transcriptional regulator; PFAM: HTH transcriptional regulator, AraC, arabinose-binding/dimerisation; HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain
YP_005715591.1	PFAM: NAD-dependent epimerase/dehydratase; KEGG: rhi:NGR_c36980 NAD-dependent epimerase/dehydratase
YP_005715592.1	PFAM: Glutathione-dependent formaldehyde-activating, GFA; KEGG: smd:Smed_3558 glutathione-dependent formaldehyde-activating GFA
YP_005715593.1	KEGG: smd:Smed_3559 myo-inositol catabolism IolB domain-containing protein
YP_005715594.1	KEGG: rhi:NGR_c37010 xylose isomerase domain protein, TIM barrel; PFAM: Xylose isomerase, TIM barrel domain
YP_005715595.1	KEGG: smd:Smed_3561 thiamine pyrophosphate protein central region; PFAM: Thiamine pyrophosphate enzyme, central domain; Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain; Thiamine pyrophosphate enzyme, C-terminal TPP-binding
YP_005715596.1	KEGG: rhi:NGR_c37030 PfkB family carbohydrate kinase protein; PFAM: Protein of unknown function DUF2090; Carbohydrate/purine kinase
YP_005715597.1	PFAM: Sugar isomerase (SIS); KEGG: smd:Smed_3563 RpiR family transcriptional regulator
YP_005715599.1	PFAM: Oxidoreductase, N-terminal; Oxidoreductase, C-terminal; KEGG: smd:Smed_3564 oxidoreductase domain-containing protein
YP_005715600.1	PFAM: Glutamine amidotransferase, class-II; KEGG: smd:Smed_3565 hypothetical protein
YP_005715601.1	TIGRFAM: Bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; KEGG: smd:Smed_3566 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; PFAM: DNA/pantothenate metabolism flavoprotein, C-terminal; Flavoprotein
YP_005715602.1	PFAM: Transcription regulator Rrf2; KEGG: smd:Smed_3567 BadM/Rrf2 family transcriptional regulator
YP_005715603.1	PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: smd:Smed_3568 FAD-dependent pyridine nucleotide-disulphide oxidoreductase
YP_005715604.1	KEGG: smd:Smed_3569 ankyrin; PFAM: Ankyrin repeat; SMART: Ankyrin repeat
YP_005715605.1	KEGG: smd:Smed_3570 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR
YP_005715606.1	KEGG: smd:Smed_3571 2-polyprenylphenol 6-hydroxylase; TIGRFAM: Probable ubiquinone biosynthesis protein UbiB; PFAM: ABC-1
YP_005715607.1	TIGRFAM: UbiE/COQ5 methyltransferase; HAMAP: UbiE/COQ5 methyltransferase; KEGG: smd:Smed_3572 ubiquinone/menaquinone biosynthesis methyltransferase; PFAM: UbiE/COQ5 methyltransferase
YP_005715608.1	KEGG: smd:Smed_3573 formamidopyrimidine-DNA glycosylase; PFAM: DNA glycosylase/AP lyase, catalytic domain; DNA glycosylase/AP lyase, H2TH DNA-binding; TIGRFAM: DNA glycosylase/AP lyase; HAMAP: Formamidopyrimidine-DNA glycosylase; SMART: DNA glycosylase/AP lyase, catalytic domain
YP_005715609.1	PFAM: Crotonase, core; KEGG: rhi:NGR_c37150 enoyl-CoA hydratase
YP_005715610.1	TIGRFAM: Ribosomal protein S20; HAMAP: Ribosomal protein S20; KEGG: smd:Smed_0001 30S ribosomal protein S20; PFAM: Ribosomal protein S20
YP_005715612.1	PFAM: ROK; KEGG: smd:Smed_4468 putative transcriptional regulator protein
YP_005715613.1	SMART: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; manually curated; TIGRFAM: Diguanylate cyclase, predicted; PAS; KEGG: rhi:NGR_c24200 putative GGDEF/EAL domain transcriptional regulator; PFAM: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; MHYT
YP_005715614.1	KEGG: smd:Smed_4469 oxidoreductase domain-containing protein; PFAM: Oxidoreductase, N-terminal; Oxidoreductase, C-terminal
YP_005715615.1	KEGG: smd:Smed_4470 hypothetical protein
YP_005715616.1	KEGG: smd:Smed_4471 hypothetical protein
YP_005715617.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: smd:Smed_4472 LysR family transcriptional regulator
YP_005715618.1	KEGG: smd:Smed_4473 putative sugar uptake ABC transporter periplasmic solute-binding protein precursor
YP_005715619.1	PFAM: ABC transporter-like; KEGG: smd:Smed_4474 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_005715620.1	PFAM: ABC transporter permease; KEGG: rhi:NGR_c24130 ABC transporter (sugar), membrane spanning protein
YP_005715621.1	PFAM: Fumarylacetoacetase, C-terminal-like; KEGG: smd:Smed_4476 hypothetical protein
YP_005715622.1	PFAM: Aldehyde dehydrogenase domain; KEGG: smd:Smed_4477 aldehyde dehydrogenase
YP_005715623.1	KEGG: smd:Smed_4478 dihydroxy-acid dehydratase; PFAM: Dihydroxy-acid/6-phosphogluconate dehydratase
YP_005715624.1	KEGG: smd:Smed_4479 hypothetical protein
YP_005715625.1	KEGG: smd:Smed_4480 transglutaminase domain-containing protein; PFAM: Transglutaminase-like; Bacterial transglutaminase-like, N-terminal; SMART: Transglutaminase-like
YP_005715626.1	PFAM: Domain of unknown function DUF403; KEGG: smd:Smed_4481 hypothetical protein
YP_005715627.1	PFAM: Domain of unknown function DUF404; Domain of unknown function DUF407; KEGG: rhi:NGR_c24070 hypothetical protein
YP_005715628.1	PFAM: Drug/metabolite transporter; KEGG: smd:Smed_4483 hypothetical protein
YP_005715629.1	KEGG: rhi:NGR_b08490 hypothetical protein
YP_005715630.1	KEGG: rhi:NGR_b08500 hypothetical protein
YP_005715631.1	PFAM: Protein of unknown function DUF411; KEGG: avi:Avi_9870 hypothetical protein
YP_005715632.1	KEGG: rhi:NGR_c24030 dead-box ATP-dependent RNA helicase; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal
YP_005715633.1	PFAM: Host attachment protein; KEGG: smd:Smed_4485 hypothetical protein
YP_005715634.1	KEGG: smd:Smed_4486 hypothetical protein; manually curated; PFAM: Domain of unknown function DUF752
YP_005715635.1	PFAM: FAD dependent oxidoreductase; KEGG: smd:Smed_4487 FAD dependent oxidoreductase
YP_005715636.1	PFAM: Protein of unknown function DUF1045; KEGG: smd:Smed_4488 hypothetical protein
YP_005715637.1	TIGRFAM: Putative urate catabolism protein; KEGG: smd:Smed_4489 chitin deacetylase; PFAM: Polysaccharide deacetylase
YP_005715638.1	KEGG: smd:Smed_4490 hypothetical protein; TIGRFAM: 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase, type 1; PFAM: Oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase
YP_005715639.1	HAMAP: Ureidoglycolate hydrolase; KEGG: smd:Smed_4491 ureidoglycolate hydrolase; PFAM: Ureidoglycolate hydrolase
YP_005715640.1	PFAM: Reverse transcriptase; Group II intron, maturase-specific; KEGG: rhi:NGR_b07990 putative reverse transcriptase/maturase
YP_005715641.1	KEGG: smd:Smed_6023 transposase
YP_005715642.1	TIGRFAM: Hydroxyisourate hydrolase; KEGG: rhi:NGR_c23950 putative purine catabolism-related protein; PFAM: Transthyretin/hydroxyisourate hydrolase
YP_005715643.1	PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: smd:Smed_5828 short-chain dehydrogenase/reductase SDR; SMART: Polyketide synthase/Fatty acid synthase, KR
YP_005715644.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: smd:Smed_5829 LysR family transcriptional regulator
YP_005715645.1	KEGG: ret:RHE_PF00225 two-component response regulator protein; PFAM: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal; SMART: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal
YP_005715646.1	KEGG: ret:RHE_PF00224 putative two-component response regulator protein; PFAM: Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain
YP_005715647.1	TIGRFAM: PAS; PFAM: MASE1; PAS fold-3; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; ATPase-like, ATP-binding domain; KEGG: rlt:Rleg2_5459 multi-sensor signal transduction histidine kinase; SMART: ATPase-like, ATP-binding domain; PAC motif; PAS; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain
YP_005715648.1	KEGG: atu:Atu4307 hypothetical protein; PFAM: Beta-lactamase-like; SMART: Beta-lactamase-like
YP_005715649.1	PFAM: NAD-dependent epimerase/dehydratase; KEGG: smd:Smed_5821 NmrA family protein
YP_005715650.1	PFAM: Cupin 2, conserved barrel; KEGG: smd:Smed_5822 cupin 2 domain-containing protein
YP_005715651.1	PFAM: Mechanosensitive ion channel MscS; KEGG: smd:Smed_5823 MscS mechanosensitive ion channel
YP_005715652.1	PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region; KEGG: smd:Smed_5824 FAD-dependent pyridine nucleotide-disulphide oxidoreductase
YP_005715653.1	KEGG: smd:Smed_5825 alpha/beta hydrolase fold; PFAM: Alpha/beta hydrolase fold-1
YP_005715654.1	KEGG: smd:Smed_5827 helix-turn-helix domain-containing protein; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain
YP_005715655.1	KEGG: smd:Smed_4493 L-lactate dehydrogenase (cytochrome); PFAM: Glutamate synthase, central-C
YP_005715656.1	KEGG: smd:Smed_2463 glucose-6-phosphate isomerase; PFAM: Glucose-6-phosphate isomerase, prokaryote
YP_005715657.1	PFAM: Periplasmic binding protein/LacI transcriptional regulator; KEGG: smd:Smed_2475 monosaccharide-transporting ATPase
YP_005715658.1	PFAM: ABC transporter-like; KEGG: smd:Smed_2474 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_005715659.1	PFAM: ABC transporter permease; KEGG: smd:Smed_2473 monosaccharide-transporting ATPase
YP_005715660.1	KEGG: vei:Veis_2683 alcohol dehydrogenase; PFAM: Alcohol dehydrogenase GroES-like; Alcohol dehydrogenase, C-terminal
YP_005715661.1	KEGG: vei:Veis_2684 carbohydrate kinase, FGGY; PFAM: Carbohydrate kinase, FGGY, C-terminal; Carbohydrate kinase, FGGY, N-terminal
YP_005715662.1	PFAM: Sugar-binding domain, putative; KEGG: vei:Veis_2685 DeoR family transcriptional regulator
YP_005715663.1	KEGG: smd:Smed_4493 L-lactate dehydrogenase (cytochrome); PFAM: FMN-dependent dehydrogenase
YP_005715664.1	TIGRFAM: Guanine deaminase; KEGG: smd:Smed_4494 guanine deaminase; PFAM: Amidohydrolase 1
YP_005715665.1	PFAM: Protein of unknown function DUF989; Cytochrome c, class I; KEGG: smd:Smed_4495 hypothetical protein
YP_005715666.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: smd:Smed_4496 LysR family transcriptional regulator
YP_005715667.1	KEGG: smd:Smed_4497 hypothetical protein
YP_005715668.1	TIGRFAM: Xanthine dehydrogenase, molybdopterin binding subunit; KEGG: smd:Smed_4498 xanthine dehydrogenase molybdopterin binding subunit; PFAM: Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding; Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead
YP_005715670.1	TIGRFAM: Xanthine dehydrogenase, small subunit; KEGG: smd:Smed_4499 xanthine dehydrogenase small subunit; PFAM: Molybdopterin dehydrogenase, FAD-binding; Ferredoxin; CO dehydrogenase flavoprotein, C-terminal; [2Fe-2S]-binding
YP_005715671.1	TIGRFAM: 3-hydroxybutyrate dehydrogenase; KEGG: smd:Smed_4500 3-hydroxybutyrate dehydrogenase; PFAM: Short-chain dehydrogenase/reductase SDR
YP_005715672.1	TIGRFAM: Glycerol kinase; KEGG: smd:Smed_4501 glycerol kinase; PFAM: Carbohydrate kinase, FGGY, N-terminal; Carbohydrate kinase, FGGY, C-terminal
YP_005715673.1	KEGG: smd:Smed_4502 regulatory protein ArsR; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR
YP_005715674.1	PFAM: Activator of Hsp90 ATPase homologue 1-like; KEGG: smd:Smed_4503 activator of HSP90 ATPase 1 family protein
YP_005715675.1	KEGG: mes:Meso_0629 hypothetical protein
YP_005715676.1	PFAM: Protein of unknown function DUF1801; KEGG: smd:Smed_4505 hypothetical protein
YP_005715677.1	PFAM: Protein of unknown function DUF1801; KEGG: smd:Smed_4506 hypothetical protein
YP_005715678.1	KEGG: smd:Smed_4507 luciferase family protein; TIGRFAM: Conserved hypothetical protein CHP03858, luciferase-like monooxygenase, putative; PFAM: Luciferase-like, subgroup
YP_005715679.1	TIGRFAM: Peptidase M24A, methionine aminopeptidase, subfamily 1; KEGG: smd:Smed_4508 methionine aminopeptidase; PFAM: Peptidase M24, structural domain
YP_005715680.1	PFAM: Transposase, IS4-like; KEGG: ret:RHE_PD00041 insertion sequence transposase protein
YP_005715681.1	PFAM: Domain of unknown function DUF1228; KEGG: smd:Smed_4509 hypothetical protein
YP_005715682.1	PFAM: SbmA/BacA-like; KEGG: smd:Smed_4510 transport protein
YP_005715683.1	PFAM: Polysaccharide deacetylase; KEGG: smd:Smed_4511 hypothetical protein
YP_005715684.1	KEGG: smd:Smed_4512 NnrU family protein
YP_005715685.1	PFAM: Protein of unknown function DUF2133; KEGG: smd:Smed_4513 hypothetical protein
YP_005715686.1	TIGRFAM: GTP-binding, EngA; Small GTP-binding protein; HAMAP: GTP-binding, EngA; KEGG: smd:Smed_4514 GTP-binding protein EngA; PFAM: GTP-binding protein, HSR1-related
YP_005715687.1	KEGG: smd:Smed_4515 BadM/Rrf2 family transcriptional regulator; TIGRFAM: Transcription regulator Rrf2; PFAM: Transcription regulator Rrf2
YP_005715688.1	PFAM: Acyl-CoA dehydrogenase, type 2, C-terminal; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA dehydrogenase, N-terminal; KEGG: smd:Smed_4516 acyl-CoA dehydrogenase type 2
YP_005715689.1	KEGG: smd:Smed_4517 hypothetical protein
YP_005715690.1	PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: smd:Smed_4518 FAD dependent oxidoreductase
YP_005715691.1	PFAM: Nodulation efficiency, NfeD; KEGG: smd:Smed_4519 hypothetical protein
YP_005715692.1	KEGG: smd:Smed_4520 band 7 protein; PFAM: Band 7 protein; SMART: Band 7 protein
YP_005715693.1	PFAM: NUDIX hydrolase domain; KEGG: smd:Smed_4521 NUDIX hydrolase
YP_005715694.1	KEGG: smd:Smed_4522 siroheme synthase; TIGRFAM: Sirohaem synthase, N-terminal; PFAM: Tetrapyrrole methylase; Sirohaem synthase, dimerisation domain
YP_005715695.1	PFAM: Molybdopterin oxidoreductase; Molydopterin dinucleotide-binding domain; Molybdopterin oxidoreductase, Fe4S4 domain; BFD-like [2Fe-2S]-binding domain; KEGG: smd:Smed_4523 molybdopterin oxidoreductase; SMART: Molybdopterin oxidoreductase, Fe4S4 domain
YP_005715696.1	KEGG: smd:Smed_4524 nitrite reductase (NAD(P)H), small subunit; TIGRFAM: Nitrite reductase [NAD(P)H] large subunit, NirD; PFAM: Rieske [2Fe-2S] iron-sulphur domain
YP_005715697.1	SMART: Cystathionine beta-synthase, core; TIGRFAM: Nitrite reductase [NAD(P)H] large subunit, NirB; KEGG: smd:Smed_4525 nitrite reductase (NAD(P)H), large subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; BFD-like [2Fe-2S]-binding domain; Nitrite/sulphite reductase 4Fe-4S domain; Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region; Nitrite/sulphite reductase, hemoprotein beta-component, ferrodoxin-like
YP_005715698.1	PFAM: Extracellular solute-binding protein, family 7, bacteria; KEGG: smd:Smed_4968 TRAP dicarboxylate transporter-DctP subunit
YP_005715699.1	PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: smd:Smed_4967 tripartite ATP-independent periplasmic transporter DctQ
YP_005715700.1	KEGG: smd:Smed_4966 TRAP dicarboxylate transporter, DctM subunit; TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit
YP_005715701.1	PFAM: MaoC-like dehydratase; KEGG: smd:Smed_4965 dehydratase
YP_005715702.1	PFAM: Periplasmic binding protein/LacI transcriptional regulator; HTH transcriptional regulator, LacI; KEGG: oan:Oant_2762 alanine racemase
YP_005715703.1	KEGG: oan:Oant_2763 extracellular solute-binding protein; PFAM: Extracellular solute-binding protein, family 3; SMART: Extracellular solute-binding protein, family 3
YP_005715704.1	KEGG: oan:Oant_2764 polar amino acid ABC transporter, inner membrane subunit; TIGRFAM: Amino acid ABC transporter, permease protein, 3-TM domain, His/Glu/Gln/Arg/opine family; PFAM: Binding-protein-dependent transport systems inner membrane component
YP_005715705.1	PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: oan:Oant_2766 short-chain dehydrogenase/reductase SDR
YP_005715706.1	KEGG: cwo:Cwoe_2246 aminotransferase class-III; PFAM: Aminotransferase class-III; Aminoglycoside phosphotransferase; Peptidase M23
YP_005715707.1	PFAM: ABC transporter-like; Transport-associated OB, type 2; KEGG: pfl:PFL_3073 maltose/maltodextrin ABC transporter, ATP-binding protein; SMART: ATPase, AAA+ type, core
YP_005715708.1	PFAM: Bacterial extracellular solute-binding, family 1; KEGG: bbe:BBR47_58050 ABC transporter substrate binding protein
YP_005715709.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: bbe:BBR47_58040 ABC transporter permease protein
YP_005715710.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: bbe:BBR47_58030 ABC transporter permease protein
YP_005715711.1	PFAM: Glycoside hydrolase, family 37; KEGG: str:Sterm_0716 hypothetical protein
YP_005715712.1	KEGG: oan:Oant_2762 alanine racemase; PFAM: Periplasmic binding protein/LacI transcriptional regulator; HTH transcriptional regulator, LacI; SMART: HTH transcriptional regulator, LacI
YP_005715713.1	KEGG: msv:Mesil_2394 beta-galactosidase; PFAM: Glycoside hydrolase, family 42, N-terminal; Beta-galactosidase trimerisation; Beta-galactosidase C-terminal
YP_005715714.1	PFAM: Beta-lactamase-related; KEGG: smd:Smed_4964 beta-lactamase
YP_005715715.1	KEGG: smd:Smed_4963 peroxidase; PFAM: Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant; Peroxiredoxin, C-terminal
YP_005715716.1	TIGRFAM: Phosphomethylpyrimidine kinase type-2; KEGG: smd:Smed_4962 phosphomethylpyrimidine kinase; PFAM: Phosphomethylpyrimidine kinase type-1
YP_005715717.1	KEGG: smd:Smed_4961 exopolysaccharide transport protein family; TIGRFAM: Exopolysaccharide transport protein; Exopolysaccharide synthesis protein; PFAM: Lipopolysaccharide biosynthesis; Cobyrinic acid a,c-diamide synthase
YP_005715718.1	KEGG: smd:Smed_4960 nucleotidyl transferase; PFAM: Nucleotidyl transferase
YP_005715719.1	PFAM: Glycosyl transferase, family 2; KEGG: smd:Smed_4959 glycosyl transferase family protein
YP_005715720.1	PFAM: Glycosyl transferase, family 2; KEGG: smd:Smed_4958 glycosyl transferase family protein
YP_005715721.1	PFAM: Glycosyl transferase, family 2; KEGG: smd:Smed_4957 glycosyl transferase family protein
YP_005715722.1	KEGG: smd:Smed_4956 putative glucosyltransferase protein
YP_005715723.1	KEGG: smd:Smed_4955 glycoside hydrolase family protein; PFAM: Glycoside hydrolase, family 16
YP_005715724.1	KEGG: smd:Smed_4954 succinyltransferase protein
YP_005715725.1	KEGG: smd:Smed_4953 hypothetical protein
YP_005715726.1	KEGG: rhi:NGR_b18300 succinoglycan biosynthesis protein ExoI; PFAM: Staphylococcal nuclease (SNase-like); SMART: Staphylococcal nuclease (SNase-like)
YP_005715727.1	PFAM: Polysaccharide biosynthesis protein; KEGG: smd:Smed_4951 polysaccharide biosynthesis protein
YP_005715728.1	PFAM: Glycosyl transferase, family 2; KEGG: smd:Smed_4950 glycosyl transferase family protein
YP_005715729.1	KEGG: smd:Smed_4949 ExoV-like protein
YP_005715730.1	PFAM: Glycosyl transferase, family 2; KEGG: smd:Smed_4948 glycosyl transferase family protein
YP_005715731.1	KEGG: smd:Smed_4947 posttranscriptional regulator, repressor protein
YP_005715732.1	KEGG: smd:Smed_4946 undecaprenyl-phosphate galactose phosphotransferase; PFAM: Bacterial sugar transferase
YP_005715733.1	PFAM: Polysaccharide export protein; Soluble ligand binding domain; KEGG: smd:Smed_4945 polysaccharide export protein
YP_005715734.1	PFAM: O-antigen ligase-related; KEGG: smd:Smed_4944 O-antigen polymerase
YP_005715735.1	PFAM: Acyltransferase 3; KEGG: smd:Smed_4943 acyltransferase 3
YP_005715736.1	TIGRFAM: UDP-glucose 4-epimerase; KEGG: smd:Smed_4942 UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase
YP_005715737.1	PFAM: ABC transporter-like; ABC transporter, transmembrane domain; KEGG: smd:Smed_4941 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_005715738.1	KEGG: smd:Smed_4939 ExsB protein; TIGRFAM: Queuosine synthesis; PFAM: Queuosine synthesis
YP_005715739.1	KEGG: rhi:NGR_b18170 6-pyruvoyl tetrahydrobiopterin synthase; TIGRFAM: queuosine biosynthesis protein QueD; PFAM: 6-pyruvoyl tetrahydropterin synthase-related
YP_005715740.1	KEGG: smd:Smed_4937 radical SAM domain-containing protein; TIGRFAM: 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE; PFAM: Radical SAM
YP_005715741.1	PFAM: ABC transporter, N-terminal; KEGG: smd:Smed_4936 ABC transporter
YP_005715742.1	KEGG: smd:Smed_4934 XRE family transcriptional regulator; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3
YP_005715743.1	KEGG: smd:Smed_4933 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain
YP_005715744.1	TIGRFAM: PAS; PFAM: Signal transduction histidine kinase, HWE region; PAS fold; PAS fold-4; GAF; PAS fold-3; KEGG: smd:Smed_4932 signal transduction histidine kinase; SMART: Signal transduction histidine kinase, HWE region; GAF; PAS; PAC motif
YP_005715745.1	PFAM: Glycoside hydrolase, family 16; Haemolysin-type calcium-binding repeat; KEGG: smd:Smed_4931 glycoside hydrolase family protein
YP_005715746.1	KEGG: smd:Smed_4930 putative sugar uptake ABC transporter periplasmic solute-binding protein precursor
YP_005715747.1	PFAM: ABC transporter-like; KEGG: smd:Smed_4929 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_005715748.1	PFAM: ABC transporter permease; KEGG: smd:Smed_4928 monosaccharide-transporting ATPase
YP_005715749.1	KEGG: smd:Smed_4927 peptidase S41; PFAM: Peptidase S41; PDZ/DHR/GLGF; SMART: PDZ/DHR/GLGF; Peptidase S41
YP_005715750.1	KEGG: smd:Smed_4926 hypothetical protein
YP_005715751.1	KEGG: smd:Smed_4924 hypothetical protein
YP_005715752.1	KEGG: smd:Smed_4923 peptidase M50; PFAM: Peptidase M50; Cystathionine beta-synthase, core; SMART: Cystathionine beta-synthase, core
YP_005715753.1	PFAM: Alpha-L-arabinofuranosidase, C-terminal; KEGG: ara:Arad_9457 alpha-L-arabinofuranosidase protein; SMART: Alpha-L-arabinofuranosidase, C-terminal
YP_005715754.1	PFAM: ABC transporter-like; Transport-associated OB, type 2; KEGG: atu:Atu3103 ABC transporter, nucleotide binding/ATPase protein (sugar); SMART: ATPase, AAA+ type, core
YP_005715755.1	PFAM: Bacterial extracellular solute-binding, family 1; KEGG: hel:HELO_2790 ABC-type transport system periplasmic substrate-binding protein
YP_005715756.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: atu:Atu3101 ABC transporter, membrane spanning protein (sugar)
YP_005715757.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: hel:HELO_2788 ABC-type transport system permease protein
YP_005715758.1	KEGG: rec:RHECIAT_PA0000152 probable transcriptional regulator protein, ArsR family; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR
YP_005715759.1	KEGG: smd:Smed_4921 beta-lactamase; PFAM: Beta-lactamase-related
YP_005715760.1	KEGG: smd:Smed_4920 hypothetical protein
YP_005715761.1	KEGG: smd:Smed_4919 periplasmic binding protein/LacI transcriptional regulator; PFAM: Periplasmic binding protein/LacI transcriptional regulator; SMART: HTH transcriptional regulator, LacI
YP_005715762.1	PFAM: Oxidoreductase, N-terminal; Oxidoreductase, C-terminal; KEGG: smd:Smed_4918 oxidoreductase domain-containing protein
YP_005715763.1	PFAM: Xylose isomerase, TIM barrel domain; KEGG: smd:Smed_4917 xylose isomerase domain-containing protein
YP_005715764.1	PFAM: Bacterial extracellular solute-binding, family 1; KEGG: smd:Smed_4916 extracellular solute-binding protein
YP_005715765.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_4915 binding-protein-dependent transport systems inner membrane component
YP_005715766.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_4914 binding-protein-dependent transport systems inner membrane component
YP_005715767.1	PFAM: ABC transporter-like; Transport-associated OB, type 2; KEGG: smd:Smed_4913 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_005715768.1	KEGG: smd:Smed_4912 GntR domain-containing protein; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: GntR, C-terminal; HTH transcriptional regulator, GntR
YP_005715769.1	PFAM: ABC transporter permease; KEGG: smd:Smed_4911 inner membrane ABC transporter permease protein YjfF
YP_005715770.1	PFAM: ABC transporter permease; KEGG: smd:Smed_4910 monosaccharide-transporting ATPase
YP_005715771.1	PFAM: ABC transporter-like; KEGG: smd:Smed_4909 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_005715772.1	PFAM: Periplasmic binding protein/LacI transcriptional regulator; KEGG: smd:Smed_4908 periplasmic binding protein/LacI transcriptional regulator
YP_005715773.1	PFAM: Reverse transcriptase; Group II intron, maturase-specific; KEGG: rhi:NGR_b07990 putative reverse transcriptase/maturase
YP_005715774.1	KEGG: smd:Smed_6023 transposase
YP_005715775.1	KEGG: smd:Smed_4907 glutathione synthetase; PFAM: Prokaryotic glutathione synthetase, ATP-binding
YP_005715776.1	KEGG: smd:Smed_4906 hypothetical protein; TIGRFAM: Conserved hypothetical protein QEGLA; PFAM: Protein of unknown function DUF1704
YP_005715777.1	PFAM: N-formylglutamate amidohydrolase; KEGG: rhi:NGR_b15440 hypothetical protein
YP_005715778.1	KEGG: smd:Smed_4901 hypothetical protein
YP_005715779.1	PFAM: Exopolysaccharide synthesis, ExoD; KEGG: smd:Smed_4900 exopolysaccharide synthesis ExoD
YP_005715780.1	PFAM: Glycosyl transferase, group 1; KEGG: smd:Smed_4899 glycosyl transferase group 1
YP_005715781.1	PFAM: SNARE associated Golgi protein; KEGG: rhi:NGR_b07190 putative inner membrane protein
YP_005715782.1	TIGRFAM: Cu(I)-responsive transcriptional regulator; PFAM: Transcription regulator MerR, DNA binding; HTH transcriptional regulator, MerR; KEGG: smd:Smed_4898 MerR family transcriptional regulator; SMART: HTH transcriptional regulator, MerR
YP_005715783.1	TIGRFAM: ATPase, P type, cation/copper-transporter; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; Copper ion-binding; ATPase, P-type, heavy metal translocating; KEGG: smd:Smed_4897 heavy metal translocating P-type ATPase; PFAM: ATPase, P-type, ATPase-associated domain; Heavy metal transport/detoxification protein; Haloacid dehalogenase-like hydrolase
YP_005715784.1	PFAM: Heavy metal transport/detoxification protein; KEGG: rhi:NGR_b08480 hypothetical protein
YP_005715785.1	KEGG: smd:Smed_4894 hypothetical protein
YP_005715786.1	KEGG: smd:Smed_4893 regulatory protein ArsR; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR
YP_005715787.1	PFAM: Major facilitator superfamily MFS-1; KEGG: smd:Smed_4892 major facilitator transporter
YP_005715788.1	KEGG: mlo:mlr4459 sensory histidine protein kinase; PFAM: ATPase-like, ATP-binding domain; SMART: ATPase-like, ATP-binding domain
YP_005715789.1	PFAM: YkuD domain; Peptidoglycan binding-like; KEGG: smd:Smed_4890 ErfK/YbiS/YcfS/YnhG family protein
YP_005715790.1	PFAM: ABC-type glycine betaine transport system, substrate-binding domain; KEGG: smd:Smed_4889 substrate-binding region of ABC-type glycine betaine transport system
YP_005715791.1	PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: smd:Smed_4888 TetR family transcriptional regulator
YP_005715792.1	KEGG: smd:Smed_4887 NADH:flavin oxidoreductase/NADH oxidase; PFAM: NADH:flavin oxidoreductase/NADH oxidase, N-terminal; FAD-dependent pyridine nucleotide-disulphide oxidoreductase
YP_005715793.1	KEGG: rle:pRL120520 hypothetical protein
YP_005715794.1	PFAM: Usg-like; KEGG: smd:Smed_1283 Usg family protein
YP_005715795.1	HAMAP: Chaperonin Cpn10; PFAM: Chaperonin Cpn10; KEGG: ret:RHE_CH01238 10 kDa chaperonin, heat shock protein; SMART: Chaperonin Cpn10
YP_005715796.1	KEGG: smd:Smed_1281 chaperonin GroEL; TIGRFAM: Chaperonin Cpn60; PFAM: Chaperonin Cpn60/TCP-1
YP_005715797.1	PFAM: Protein of unknown function DUF899, thioredoxin-like; KEGG: smd:Smed_1280 protein of unknown function DUF899 thioredoxin family protein
YP_005715798.1	KEGG: rlt:Rleg2_4741 hypothetical protein
YP_005715799.1	KEGG: rhi:NGR_c30280 hypothetical protein
YP_005715800.1	KEGG: rhi:NGR_c30290 two component transcriptional regulator; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal
YP_005715801.1	KEGG: rhi:NGR_c30300 sensor protein; PFAM: ATPase-like, ATP-binding domain; HAMP linker domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; HAMP linker domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain
YP_005715802.1	KEGG: rhi:NGR_b04790 putative transcriptional regulator protein, AraC family; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain
YP_005715803.1	PFAM: [2Fe-2S]-binding; Ferredoxin; KEGG: rhi:NGR_b04780 hypothetical oxidoreductase with iron-sulfur subunit
YP_005715804.1	KEGG: rhi:NGR_b04770 probable hydroxylase molybdopterin-containing subunit; PFAM: Molybdopterin dehydrogenase, FAD-binding; CO dehydrogenase flavoprotein, C-terminal
YP_005715805.1	KEGG: rhi:NGR_b04760 putative aerobic-type carbon monoxide dehydrogenase; PFAM: Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding; Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead
YP_005715806.1	KEGG: smd:Smed_1212 potassium efflux system protein; TIGRFAM: K+/H+ exchanger; PFAM: Cation/H+ exchanger; Regulator of K+ conductance, N-terminal
YP_005715808.1	KEGG: mlo:mlr3817 hypothetical protein
YP_005715809.1	KEGG: ret:RHE_CH02150 aminoglycoside N6'-acetyltransferase protein
YP_005715810.1	KEGG: smd:Smed_5897 hypothetical protein
YP_005715811.1	PFAM: Domain of unknown function DUF395, YeeE/YedE; KEGG: mes:Meso_3786 protein of unknown function DUF395, YeeE/YedE
YP_005715812.1	KEGG: smd:Smed_5900 rhodanese domain-containing protein; PFAM: Rhodanese-like; SMART: Rhodanese-like
YP_005715813.1	TIGRFAM: Outer membrane autotransporter barrel; PFAM: Autotransporter beta-domain; KEGG: axy:AXYL_03160 outer membrane autotransporter barrel domain-containing protein 4; SMART: Autotransporter beta-domain
YP_005715814.1	PFAM: Signal transduction histidine kinase, internal region; KEGG: axy:AXYL_05786 histidine kinase family protein
YP_005715815.1	KEGG: azc:AZC_1299 two-component system regulatory protein; PFAM: Signal transduction response regulator, receiver domain; LytTr, DNA-binding domain; SMART: Signal transduction response regulator, receiver domain; LytTr, DNA-binding domain
YP_005715816.1	KEGG: smd:Smed_5279 hypothetical protein
YP_005715817.1	KEGG: smd:Smed_5278 peptidase domain-containing protein; PFAM: Peptidase M10B, serralysin, C-terminal; Haemolysin-type calcium-binding repeat; Peptidase, C-terminal, archaeal/bacterial; SMART: Peptidase, metallopeptidase
YP_005715818.1	KEGG: smd:Smed_4879 binding-protein-dependent transport systems inner membrane component; TIGRFAM: 2-aminoethylphosphonate ABC transport system, permease protein, putative; PFAM: Binding-protein-dependent transport systems inner membrane component
YP_005715819.1	SMART: ATPase, AAA+ type, core; TIGRFAM: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT2; KEGG: smd:Smed_4878 ABC transporter related; PFAM: ABC transporter-like
YP_005715820.1	KEGG: smd:Smed_4877 extracellular solute-binding protein; TIGRFAM: 2-aminoethylphosphonate ABC transport system, 1-aminoethylphosphonate-binding protein component; PFAM: Bacterial extracellular solute-binding, family 1
YP_005715821.1	TIGRFAM: Putative phosphonoacetaldehyde dehydrogenase; KEGG: smd:Smed_4876 aldehyde dehydrogenase; PFAM: Aldehyde dehydrogenase domain
YP_005715822.1	KEGG: smd:Smed_4875 phosphonoacetate hydrolase; TIGRFAM: Phosphonoacetate hydrolase; PFAM: Type I phosphodiesterase/nucleotide pyrophosphatase/phosphate transferase
YP_005715823.1	TIGRFAM: 2-aminoethylphosphonate--pyruvate transaminase; 2-aminoethylphosphonate aminotransferase; KEGG: smd:Smed_4874 2-aminoethylphosphonate--pyruvate transaminase; PFAM: Aminotransferase, class V/Cysteine desulfurase
YP_005715824.1	PFAM: Na/Pi-cotransporter; PhoU; KEGG: smd:Smed_4873 Na+ cotransporter
YP_005715825.1	KEGG: smd:Smed_4872 LysR family transcriptional regulator; TIGRFAM: Transcription regulator, aminoethylphosphonate utilisation-associated, LysR-type; PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR
YP_005715826.1	TIGRFAM: Folate-binding, YgfZ; KEGG: smd:Smed_4871 FAD dependent oxidoreductase; PFAM: FAD dependent oxidoreductase; Glycine cleavage T-protein, C-terminal barrel; Glycine cleavage T-protein, N-terminal
YP_005715827.1	KEGG: smd:Smed_4870 DeoR family transcriptional regulator; PFAM: HTH transcriptional regulator, DeoR; HTH transcriptional regulator, DeoR N-terminal; SMART: HTH transcriptional regulator, DeoR N-terminal
YP_005715828.1	TIGRFAM: Phosphate acetyltransferase; KEGG: smd:Smed_4869 phosphate acetyltransferase; PFAM: Phosphate acetyl/butaryl transferase
YP_005715829.1	PFAM: Uncharacterised protein family UPF0324, prokaryote; KEGG: smd:Smed_4868 hypothetical protein
YP_005715830.1	TIGRFAM: Sulphoacetaldehyde acetyltransferase; KEGG: smd:Smed_4867 sulfoacetaldehyde acetyltransferase; PFAM: Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain; Thiamine pyrophosphate enzyme, C-terminal TPP-binding; Thiamine pyrophosphate enzyme, central domain
YP_005715831.1	PFAM: FAD dependent oxidoreductase; KEGG: smd:Smed_4863 FAD dependent oxidoreductase
YP_005715832.1	PFAM: Protein of unknown function DUF1486; KEGG: smd:Smed_4862 hypothetical protein
YP_005715833.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_4861 binding-protein-dependent transport systems inner membrane component
YP_005715834.1	PFAM: ABC transporter-like; KEGG: smd:Smed_4860 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_005715835.1	KEGG: smd:Smed_4859 taurine ABC transporter, periplasmic binding protein; TIGRFAM: Taurine ABC transporter, periplasmic binding protein; SMART: Extracellular solute-binding protein, family 3
YP_005715836.1	KEGG: smd:Smed_4858 GntR family transcriptional regulator; PFAM: HTH transcriptional regulator, GntR; Aminotransferase, class I/classII; SMART: HTH transcriptional regulator, GntR
YP_005715837.1	KEGG: scl:sce3272 AraC family transcriptional regulator; PFAM: HTH transcriptional regulator, AraC, N-terminal; HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain
YP_005715838.1	PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: mno:Mnod_2222 short-chain dehydrogenase/reductase SDR
YP_005715839.1	PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: scl:sce3273 putative short chain dehydrogenase; SMART: Polyketide synthase/Fatty acid synthase, KR
YP_005715841.1	manually curated; KEGG: axy:AXYL_03176 putative membrane protein 37
YP_005715842.1	PFAM: Intradiol ring-cleavage dioxygenase, C-terminal; KEGG: smd:Smed_4070 intradiol ring-cleavage dioxygenase
YP_005715843.1	PFAM: Protein of unknown function DUF427; KEGG: smd:Smed_4771 hypothetical protein
YP_005715844.1	PFAM: Glutathione-dependent formaldehyde-activating, GFA; KEGG: smd:Smed_4770 glutathione-dependent formaldehyde-activating GFA
YP_005715845.1	PFAM: Periplasmic binding protein/LacI transcriptional regulator; KEGG: smd:Smed_4769 periplasmic binding protein/LacI transcriptional regulator
YP_005715846.1	PFAM: ABC transporter-like; KEGG: smd:Smed_4768 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_005715847.1	PFAM: ABC transporter permease; KEGG: smd:Smed_4767 monosaccharide-transporting ATPase
YP_005715848.1	KEGG: smd:Smed_4766 ribokinase-like domain-containing protein; PFAM: Carbohydrate/purine kinase
YP_005715849.1	KEGG: smd:Smed_4765 tagatose-6-phosphate kinase; TIGRFAM: D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit AgaZ; PFAM: D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit AgaZ
YP_005715850.1	KEGG: smd:Smed_4764 periplasmic binding protein/LacI transcriptional regulator; PFAM: Periplasmic binding protein/LacI transcriptional regulator; SMART: HTH transcriptional regulator, LacI
YP_005715851.1	KEGG: smd:Smed_4763 hypothetical protein
YP_005715852.1	KEGG: smd:Smed_4762 cytochrome c oxidase subunit I type; TIGRFAM: Cytochrome c oxidase, subunit I bacterial type; PFAM: Cytochrome c oxidase, subunit I
YP_005715853.1	PFAM: Sodium/calcium exchanger membrane region; KEGG: smd:Smed_4761 sodium/calcium exchanger membrane region
YP_005715854.1	KEGG: smd:Smed_4760 cytochrome c oxidase subunit II; TIGRFAM: Cytochrome c oxidase, subunit II; PFAM: Cytochrome c oxidase subunit II C-terminal; Cytochrome c, class I
YP_005715855.1	KEGG: smd:Smed_4759 cytochrome c class I protein
YP_005715856.1	PFAM: Cytochrome c oxidase caa3-type, assembly factor CtaG-related; KEGG: smd:Smed_4758 hypothetical protein
YP_005715857.1	PFAM: Protein of unknown function DUF2231, transmembrane; KEGG: smd:Smed_4757 hypothetical protein
YP_005715858.1	KEGG: smd:Smed_4756 putative membrane-anchored oxidoreductase
YP_005715859.1	KEGG: smd:Smed_4755 putative ribonuclease BN; TIGRFAM: Ribonuclease BN; PFAM: Ribonuclease BN-related
YP_005715860.1	PFAM: Protein of unknown function DUF421; KEGG: smd:Smed_4754 hypothetical protein
YP_005715861.1	KEGG: smd:Smed_4753 hypothetical protein
YP_005715862.1	PFAM: HTH transcriptional regulator, LysR; KEGG: oca:OCAR_5805 transcriptional regulator, LysR family
YP_005715863.1	KEGG: sml:Smlt2721 putative isochorismatase
YP_005715864.1	PFAM: Protein of unknown function DUF2231, transmembrane; KEGG: rec:RHECIAT_CH0001140 hypothetical conserved membrane protein
YP_005715865.1	KEGG: smd:Smed_4751 putative ribonuclease BN; TIGRFAM: Ribonuclease BN; PFAM: Ribonuclease BN-related
YP_005715866.1	PFAM: Oxidoreductase, N-terminal; Oxidoreductase, C-terminal; KEGG: smd:Smed_4750 oxidoreductase domain-containing protein
YP_005715867.1	KEGG: smd:Smed_4749 glucuronate isomerase; PFAM: Uronate isomerase
YP_005715868.1	KEGG: smd:Smed_4748 TRAP dicarboxylate transporter, DctP subunit; TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: Extracellular solute-binding protein, family 7, bacteria
YP_005715869.1	PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: smd:Smed_4747 tripartite ATP-independent periplasmic transporter DctQ
YP_005715870.1	KEGG: smd:Smed_4746 TRAP dicarboxylate transporter, DctM subunit; TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit
YP_005715871.1	KEGG: smd:Smed_4745 GntR domain-containing protein; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: HTH transcriptional regulator, GntR; GntR, C-terminal
YP_005715872.1	KEGG: smd:Smed_4744 5-keto-4-deoxyuronate isomerase; PFAM: KduI/IolB isomerase
YP_005715873.1	TIGRFAM: 2-deoxy-D-gluconate 3-dehydrogenase; KEGG: smd:Smed_4743 2-deoxy-D-gluconate 3-dehydrogenase; PFAM: Short-chain dehydrogenase/reductase SDR
YP_005715874.1	PFAM: Cupin 2, conserved barrel; KEGG: smd:Smed_4742 cupin 2 domain-containing protein
YP_005715875.1	KEGG: smd:Smed_4741 periplasmic binding protein/LacI transcriptional regulator; PFAM: Periplasmic binding protein/LacI transcriptional regulator; HTH transcriptional regulator, LacI; SMART: HTH transcriptional regulator, LacI
YP_005715876.1	PFAM: Periplasmic binding protein/LacI transcriptional regulator; KEGG: smd:Smed_4740 periplasmic binding protein/LacI transcriptional regulator
YP_005715877.1	PFAM: ABC transporter-like; KEGG: smd:Smed_4739 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_005715878.1	PFAM: ABC transporter permease; KEGG: smd:Smed_4738 monosaccharide-transporting ATPase
YP_005715879.1	PFAM: ABC transporter permease; KEGG: smd:Smed_4737 monosaccharide-transporting ATPase
YP_005715880.1	PFAM: Phytanoyl-CoA dioxygenase; KEGG: smd:Smed_4736 phytanoyl-CoA dioxygenase
YP_005715881.1	KEGG: smd:Smed_4735 aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; PFAM: Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding; Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead
YP_005715882.1	KEGG: smd:Smed_4734 molybdopterin dehydrogenase FAD-binding; PFAM: Molybdopterin dehydrogenase, FAD-binding; CO dehydrogenase flavoprotein, C-terminal
YP_005715883.1	PFAM: [2Fe-2S]-binding; Ferredoxin; KEGG: smd:Smed_4733 2Fe-2S iron-sulfur cluster binding domain-containing protein
YP_005715884.1	KEGG: smd:Smed_4732 helix-turn-helix domain-containing protein; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain
YP_005715885.1	PFAM: Uncharacterised protein family UPF0118; KEGG: smd:Smed_4731 hypothetical protein
YP_005715886.1	PFAM: Protein of unknown function DUF1236; KEGG: smd:Smed_4730 hypothetical protein
YP_005715887.1	KEGG: smd:Smed_4729 hypothetical protein
YP_005715888.1	KEGG: smd:Smed_4728 transport-associated; PFAM: Transport-associated; SMART: Transport-associated and nodulation domain, bacteria
YP_005715889.1	PFAM: Protein of unknown function DUF2934; KEGG: rlg:Rleg_5768 hypothetical protein
YP_005715890.1	PFAM: CsbD-like; KEGG: smd:Smed_4727 CsbD family protein
YP_005715891.1	KEGG: smd:Smed_4726 exported peptide protein
YP_005715892.1	KEGG: smd:Smed_4725 putative Sir2-like transcriptional silencer protein
YP_005715893.1	PFAM: dTDP-4-dehydrorhamnose reductase; manually curated; TIGRFAM: dTDP-4-dehydrorhamnose reductase; KEGG: smd:Smed_4724 dTDP-4-dehydrorhamnose reductase
YP_005715894.1	TIGRFAM: dTDP-glucose 4,6-dehydratase; KEGG: smd:Smed_4723 dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase
YP_005715895.1	TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase-related; KEGG: smd:Smed_4722 dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 3,5-epimerase-related
YP_005715896.1	TIGRFAM: Glucose-1-phosphate thymidylyltransferase, long form; KEGG: smd:Smed_4721 glucose-1-phosphate thymidylyltransferase; PFAM: Nucleotidyl transferase
YP_005715897.1	KEGG: smd:Smed_4720 hypothetical protein
YP_005715898.1	PFAM: Polysaccharide pyruvyl transferase; KEGG: smd:Smed_4719 polysaccharide pyruvyl transferase
YP_005715899.1	PFAM: Polysaccharide pyruvyl transferase; KEGG: smd:Smed_4718 polysaccharide pyruvyl transferase
YP_005715900.1	PFAM: Glycosyl transferase, group 1; Glycosyl transferase, family 2; KEGG: smd:Smed_4717 glycosyl transferase family protein
YP_005715901.1	KEGG: smd:Smed_4716 putative membrane-anchored protein
YP_005715902.1	PFAM: Domain of unknown function DUF3495; Glycosyl transferase, group 1; KEGG: smd:Smed_4715 glycosyl transferase group 1
YP_005715903.1	KEGG: smd:Smed_4714 MarR family transcriptional regulator; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR
YP_005715904.1	SMART: ATPase, AAA+ type, core; TIGRFAM: ATPase, type I secretion system, PrtD; KEGG: smd:Smed_4713 type I secretion system ATPase; PFAM: ABC transporter-like
YP_005715905.1	KEGG: smd:Smed_4712 HlyD family type I secretion membrane fusion protein; TIGRFAM: Type I secretion membrane fusion protein, HlyD; PFAM: Secretion protein HlyD
YP_005715906.1	PFAM: Haemolysin-type calcium-binding repeat; KEGG: smd:Smed_4711 putative secreted calcium-binding protein
YP_005715907.1	PFAM: Glycosyl transferase, family 2; KEGG: smd:Smed_4710 glycosyl transferase family protein
YP_005715908.1	PFAM: Methyltransferase type 11; KEGG: smd:Smed_4709 methyltransferase type 11
YP_005715909.1	PFAM: Glycosyl transferase, group 1; KEGG: smd:Smed_4708 glycosyl transferase group 1
YP_005715910.1	KEGG: smd:Smed_4707 putative membrane-anchored protein
YP_005715911.1	KEGG: smd:Smed_4706 hypothetical protein
YP_005715912.1	PFAM: Glycosyl transferase, group 1; KEGG: smd:Smed_4705 glycosyl transferase group 1
YP_005715913.1	KEGG: smd:Smed_4704 hypothetical protein
YP_005715914.1	PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: mlo:mll5127 ABC transporter, binding protein
YP_005715915.1	KEGG: smd:Smed_4703 HAD family hydrolase; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase-like hydrolase
YP_005715916.1	PFAM: Metallo-dependent phosphatase; KEGG: smd:Smed_4702 bis(5'nucleosyl)-tetraphosphatase, ApaH
YP_005715917.1	KEGG: smd:Smed_4701 hypothetical protein
YP_005715918.1	PFAM: Domain of unknown function DUF1705; Sulfatase; KEGG: rhi:NGR_b14100 hypothetical protein
YP_005715919.1	KEGG: rhi:NGR_b14090 putative two-component response regulator; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal
YP_005715920.1	KEGG: rhi:NGR_b14080 two component sensor kinase; PFAM: ATPase-like, ATP-binding domain; HAMP linker domain; SMART: ATPase-like, ATP-binding domain; HAMP linker domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain
YP_005715921.1	PFAM: Transcription regulator YbiH, C-terminal; Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: smd:Smed_4699 TetR family transcriptional regulator
YP_005715922.1	PFAM: Secretion protein HlyD; KEGG: smd:Smed_4698 hypothetical protein
YP_005715923.1	PFAM: ABC transporter-like; KEGG: smd:Smed_4697 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_005715924.1	PFAM: ABC-2 type transporter; KEGG: smd:Smed_4696 ABC-2 type transporter
YP_005715925.1	PFAM: ABC-2 type transporter; KEGG: smd:Smed_4695 ABC-2 type transporter
YP_005715926.1	PFAM: Phospholipase/carboxylesterase; KEGG: rhi:NGR_b13990 phospholipase/carboxylesterase family protein
YP_005715927.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: rhi:NGR_b13980 hypothetical protein
YP_005715928.1	KEGG: smd:Smed_4690 integral membrane sensor signal transduction histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain
YP_005715929.1	KEGG: smd:Smed_4689 two component, sigma54 specific, fis family transcriptional regulator; PFAM: RNA polymerase sigma factor 54, interaction; Signal transduction response regulator, receiver domain; Helix-turn-helix, Fis-type; SMART: Signal transduction response regulator, receiver domain; ATPase, AAA+ type, core
YP_005715930.1	PFAM: ABC transporter-like; Oligopeptide/dipeptide ABC transporter, C-terminal; KEGG: smd:Smed_4688 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_005715931.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_4687 binding-protein-dependent transport systems inner membrane component
YP_005715932.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_4686 alkaline phosphatase
YP_005715933.1	PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: smd:Smed_4685 extracellular solute-binding protein
YP_005715934.1	TIGRFAM: Fructose-bisphosphate aldolase, class II, Calvin cycle subtype; Ketose-bisphosphate aldolase, class-II; KEGG: rhi:NGR_b13730 fructose-1,6-bisphosphate aldolase; PFAM: Ketose-bisphosphate aldolase, class-II
YP_005715935.1	PFAM: ABC transporter-like; KEGG: smd:Smed_4682 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_005715936.1	PFAM: Glycosyl transferase, family 2; KEGG: smd:Smed_4681 glycosyl transferase family protein
YP_005715937.1	PFAM: Glycosyl transferase, family 2; KEGG: smd:Smed_4680 glycosyl transferase family protein
YP_005715938.1	PFAM: Acyltransferase 3; KEGG: smd:Smed_4679 acyltransferase 3
YP_005715939.1	KEGG: smd:Smed_4678 MerR family transcriptional regulator; PFAM: Cupin 2, conserved barrel; HTH transcriptional regulator, MerR; Helix-turn-helix type 3; SMART: HTH transcriptional regulator, MerR; Helix-turn-helix type 3
YP_005715940.1	TIGRFAM: 4-aminobutyrate aminotransferase, bacterial; KEGG: smd:Smed_4677 4-aminobutyrate aminotransferase; PFAM: Aminotransferase class-III
YP_005715941.1	TIGRFAM: Succinic semialdehyde dehydrogenase; KEGG: smd:Smed_4676 succinic semialdehyde dehydrogenase; PFAM: Aldehyde dehydrogenase domain
YP_005715942.1	TIGRFAM: Acetate kinase; KEGG: smd:Smed_4675 acetate kinase; PFAM: Acetate/butyrate kinase
YP_005715943.1	KEGG: smd:Smed_4673 heat shock protein 90; PFAM: Heat shock protein Hsp90, C-terminal; ATPase-like, ATP-binding domain; SMART: ATPase-like, ATP-binding domain
YP_005715944.1	KEGG: rhi:NGR_b13360 acyl-CoA transferase/carnitine dehydratase-like conserved hypothetical protein; PFAM: CoA-transferase family III
YP_005715945.1	KEGG: smd:Smed_4671 acyl-CoA dehydrogenase domain-containing protein; PFAM: Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA oxidase/dehydrogenase, type 1
YP_005715946.1	PFAM: HTH transcriptional regulator, LysR; LysR, substrate-binding; KEGG: smd:Smed_4670 LysR family transcriptional regulator
YP_005715947.1	PFAM: FAD dependent oxidoreductase; KEGG: smd:Smed_4669 FAD dependent oxidoreductase
YP_005715948.1	PFAM: Trimethylamine methyltransferase; KEGG: smd:Smed_1775 trimethylamine methyltransferase
YP_005715949.1	SMART: ATPase, AAA+ type, core; TIGRFAM: ABC transporter, phosphonate import, PhnC; KEGG: smd:Smed_4668 phosphonate ABC transporter, ATPase subunit; PFAM: ABC transporter-like
YP_005715950.1	TIGRFAM: ABC transporter, phosphonate, periplasmic substrate-binding protein; Phosphonate-binding periplasmic protein; KEGG: smd:Smed_4667 phosphonate ABC transporter, periplasmic phosphonate-binding protein
YP_005715951.1	KEGG: smd:Smed_4666 phosphonate ABC transporter, inner membrane subunit; TIGRFAM: Phosphonate uptake transporter; PFAM: Binding-protein-dependent transport systems inner membrane component
YP_005715952.1	KEGG: smd:Smed_4665 phosphonate ABC transporter, inner membrane subunit; TIGRFAM: Phosphonate uptake transporter; PFAM: Binding-protein-dependent transport systems inner membrane component
YP_005715953.1	KEGG: smd:Smed_4664 hypothetical protein; TIGRFAM: Protein of unknown function DUF1045; PFAM: Protein of unknown function DUF1045
YP_005715954.1	KEGG: smd:Smed_4663 phosphonate metabolism protein PhnM; TIGRFAM: Phosphonate metabolism PhnM; PFAM: Amidohydrolase 3
YP_005715955.1	KEGG: smd:Smed_4662 phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN; TIGRFAM: Phosphonate metabolism, 1,5-bisphosphokinase (PRPP-forming) PhnN; SMART: Guanylate kinase/L-type calcium channel
YP_005715956.1	SMART: HTH transcriptional regulator, ArsR; KEGG: smd:Smed_4661 regulatory protein ArsR
YP_005715957.1	PFAM: Major facilitator superfamily MFS-1; KEGG: smd:Smed_4660 major facilitator transporter
YP_005715958.1	PFAM: Reverse transcriptase; Group II intron, maturase-specific; KEGG: bxe:Bxe_A2660 putative reverse transcriptase-maturase-endonucleas
YP_005715960.1	PFAM: Amidohydrolase 1; TIGRFAM: Imidazolonepropionase; HAMAP: Imidazolonepropionase; KEGG: smd:Smed_4659 imidazolonepropionase
YP_005715961.1	PFAM: Phenylalanine/histidine ammonia-lyase; TIGRFAM: Histidine ammonia-lyase; HAMAP: Histidine ammonia-lyase; KEGG: smd:Smed_4658 histidine ammonia-lyase
YP_005715962.1	KEGG: smd:Smed_4657 N-formylglutamate amidohydrolase; TIGRFAM: N-formylglutamate deformylase; PFAM: N-formylglutamate amidohydrolase
YP_005715963.1	TIGRFAM: Urocanase; KEGG: smd:Smed_4656 urocanate hydratase; PFAM: Urocanase
YP_005715964.1	PFAM: Major facilitator superfamily MFS-1; KEGG: smd:Smed_4655 major facilitator transporter
YP_005715965.1	PFAM: Microcystin LR degradation protein MlrC, N-terminal; Microcystin LR degradation protein MlrC, C-terminal; KEGG: smd:Smed_4654 MlrC domain-containing protein
YP_005715966.1	KEGG: smd:Smed_4653 beta-N-acetylhexosaminidase; PFAM: Glycoside hydrolase, family 20, catalytic core
YP_005715967.1	KEGG: smd:Smed_4652 short chain dehydrogenase; PFAM: Short-chain dehydrogenase/reductase SDR
YP_005715968.1	PFAM: Helix-turn-helix protein RpiR; Sugar isomerase (SIS); KEGG: smd:Smed_4651 RpiR family transcriptional regulator
YP_005715969.1	PFAM: Endoribonuclease L-PSP; KEGG: rhi:NGR_b13190 hypothetical protein
YP_005715970.1	KEGG: smd:Smed_4649 hypothetical protein
YP_005715971.1	PFAM: Microcystin LR degradation protein MlrC, N-terminal; Microcystin LR degradation protein MlrC, C-terminal; KEGG: smd:Smed_4648 hypothetical protein
YP_005715972.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: smd:Smed_4647 glyoxalase/bleomycin resistance protein/dioxygenase
YP_005715973.1	PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: smd:Smed_4646 GCN5-related N-acetyltransferase
YP_005715974.1	PFAM: ABC transporter-like; Transport-associated OB, type 2; KEGG: smd:Smed_4645 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_005715975.1	PFAM: Bacterial extracellular solute-binding, family 1; KEGG: smd:Smed_4644 extracellular solute-binding protein
YP_005715976.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_4643 binding-protein-dependent transport systems inner membrane component
YP_005715977.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: rhi:NGR_b13080 putative permease component of ABC transporter
YP_005715978.1	PFAM: Oxidoreductase, N-terminal; Oxidoreductase, C-terminal; KEGG: smd:Smed_4641 oxidoreductase domain-containing protein
YP_005715980.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_4640 binding-protein-dependent transport systems inner membrane component
YP_005715981.1	PFAM: ABC transporter-like; KEGG: smd:Smed_4639 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_005715982.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_4638 binding-protein-dependent transport systems inner membrane component
YP_005715983.1	PFAM: ABC-type glycine betaine transport system, substrate-binding domain; KEGG: smd:Smed_4637 substrate-binding region of ABC-type glycine betaine transport system
YP_005715984.1	KEGG: smd:Smed_4636 mercuric reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region; Pyridine nucleotide-disulphide oxidoreductase, dimerisation
YP_005715985.1	PFAM: Amidinotransferase; KEGG: smd:Smed_4635 amidinotransferase
YP_005715986.1	PFAM: Peroxiredoxin, OsmC-like protein; KEGG: smd:Smed_4634 OsmC family protein
YP_005715987.1	PFAM: D-ribose pyranase RbsD/L-fucose mutarotase FucU; KEGG: smd:Smed_4633 RbsD or FucU transport
YP_005715988.1	PFAM: Aldehyde dehydrogenase domain; KEGG: smd:Smed_4632 aldehyde dehydrogenase
YP_005715989.1	TIGRFAM: Deoxyribose-phosphate aldolase; KEGG: smd:Smed_4631 deoxyribose-phosphate aldolase; PFAM: Deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase
YP_005715990.1	KEGG: smd:Smed_4630 DeoR family transcriptional regulator; PFAM: HTH transcriptional regulator, DeoR; HTH transcriptional regulator, DeoR N-terminal; SMART: HTH transcriptional regulator, DeoR N-terminal
YP_005715991.1	PFAM: Alpha-2-macroglobulin, N-terminal 2; Alpha-2-macroglobulin, N-terminal; Alpha-2-macroglobulin MG1 domain; Alpha-2-macroglobulin; Alpha-2-macroglobulin, thiol-ester bond-forming; A-macroglobulin complement component; PAN-1 domain; KEGG: rhi:NGR_b12790 putative inner membrane lipoprotein
YP_005715992.1	TIGRFAM: Penicillin-binding protein 1C; KEGG: smd:Smed_4628 penicillin-binding protein 1C; PFAM: Glycosyl transferase, family 51; Penicillin-binding, C-terminal; Penicillin-binding protein, transpeptidase
YP_005715993.1	PFAM: Protein of unknown function DUF982; KEGG: smd:Smed_4627 hypothetical protein
YP_005715994.1	PFAM: Heat shock protein Hsp20; KEGG: smd:Smed_4626 heat shock protein HSP20
YP_005715995.1	PFAM: Heat shock protein Hsp20; KEGG: rhi:NGR_b12740 probable heat shock protein, HSP20 family
YP_005715996.1	TIGRFAM: Guanine deaminase; KEGG: smd:Smed_4625 guanine deaminase; PFAM: Amidohydrolase 1
YP_005715997.1	PFAM: Protein of unknown function DUF989; KEGG: smd:Smed_4624 hypothetical protein
YP_005715998.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: smd:Smed_4623 LysR family transcriptional regulator
YP_005715999.1	KEGG: rle:RL3511 putative dehydrogenase/oxidoreductase; PFAM: Alcohol dehydrogenase, C-terminal; Alcohol dehydrogenase GroES-like
YP_005716000.1	PFAM: Helix-turn-helix, HxlR type; KEGG: ara:Arad_9310 transcriptional regulator protein
YP_005716001.1	KEGG: smd:Smed_4622 xanthine dehydrogenase accessory protein XdhC; TIGRFAM: Xanthine dehydrogenase accessory protein XdhC; PFAM: XdhC- CoxI
YP_005716002.1	TIGRFAM: Xanthine dehydrogenase, molybdopterin binding subunit; KEGG: smd:Smed_4621 xanthine dehydrogenase molybdopterin binding subunit; PFAM: Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding; Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead
YP_005716003.1	TIGRFAM: Xanthine dehydrogenase, small subunit; KEGG: smd:Smed_4620 xanthine dehydrogenase small subunit; PFAM: Molybdopterin dehydrogenase, FAD-binding; Ferredoxin; CO dehydrogenase flavoprotein, C-terminal; [2Fe-2S]-binding
YP_005716004.1	TIGRFAM: Hydroxyisourate hydrolase; KEGG: smd:Smed_4619 hydroxyisourate hydrolase; PFAM: Transthyretin/hydroxyisourate hydrolase
YP_005716005.1	TIGRFAM: Putative urate catabolism protein; 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase, type 1; KEGG: smd:Smed_4618 chitin deacetylase; PFAM: Oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase; Polysaccharide deacetylase
YP_005716006.1	TIGRFAM: Allantoicase; KEGG: bgl:bglu_1g13140 allantoicase; PFAM: Allantoicase domain
YP_005716007.1	PFAM: Protein of unknown function DUF3532; KEGG: rru:Rru_A2416 hypothetical protein
YP_005716008.1	PFAM: Xanthine/uracil/vitamin C permease; KEGG: smd:Smed_4615 xanthine/uracil/vitamin C permease
YP_005716009.1	PFAM: Phosphoribosyltransferase; KEGG: smd:Smed_4613 phosphoribosyltransferase
YP_005716010.1	TIGRFAM: Peptidase M20D, amidohydrolase; KEGG: smd:Smed_4612 amidohydrolase; PFAM: Peptidase M20; Peptidase M20, dimerisation
YP_005716011.1	KEGG: smd:Smed_4610 adenine deaminase; PFAM: Amidohydrolase 1
YP_005716012.1	PFAM: Inosine/uridine-preferring nucleoside hydrolase domain; KEGG: smd:Smed_4609 inosine/uridine-preferring nucleoside hydrolase
YP_005716013.1	PFAM: ABC transporter-like; KEGG: smd:Smed_4608 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_005716014.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_4607 binding-protein-dependent transport systems inner membrane component
YP_005716015.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_4606 binding-protein-dependent transport systems inner membrane component
YP_005716016.1	PFAM: Bacterial extracellular solute-binding, family 1; KEGG: smd:Smed_4605 extracellular solute-binding protein
YP_005716017.1	KEGG: smd:Smed_4604 periplasmic binding protein/LacI transcriptional regulator; PFAM: Periplasmic binding protein/LacI transcriptional regulator; SMART: HTH transcriptional regulator, LacI
YP_005716018.1	TIGRFAM: Methyltransferase FkbM; KEGG: smd:Smed_4602 FkbM family methyltransferase
YP_005716019.1	KEGG: smd:Smed_4601 cyclic nucleotide-binding protein; PFAM: Cyclic nucleotide-binding domain; SMART: Cyclic nucleotide-binding domain
YP_005716020.1	PFAM: ABC transporter, transmembrane domain; KEGG: smd:Smed_4600 ABC transporter related
YP_005716021.1	KEGG: smd:Smed_4599 hypothetical protein
YP_005716022.1	PFAM: Glycosyl transferase, family 28, C-terminal; KEGG: smd:Smed_4598 glycosyltransferase family 28 protein
YP_005716023.1	PFAM: Glycosyl transferase, group 1; KEGG: smd:Smed_4597 glycosyl transferase group 1
YP_005716024.1	PFAM: Glycosyl transferase, family 28, C-terminal; KEGG: smd:Smed_4596 putative membrane-anchored protein
YP_005716025.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_4595 binding-protein-dependent transport systems inner membrane component
YP_005716026.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_4594 binding-protein-dependent transport systems inner membrane component
YP_005716027.1	PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: smd:Smed_4593 extracellular solute-binding protein
YP_005716028.1	PFAM: ABC transporter-like; Oligopeptide/dipeptide ABC transporter, C-terminal; KEGG: smd:Smed_4592 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_005716029.1	KEGG: smd:Smed_4591 exported protein precursor
YP_005716030.1	KEGG: smd:Smed_4590 putative adenylate/guanylate cyclase; PFAM: Adenylyl cyclase class-3/4/guanylyl cyclase; SMART: Adenylyl cyclase class-3/4/guanylyl cyclase
YP_005716031.1	TIGRFAM: Nucleotide sugar dehydrogenase; KEGG: smd:Smed_4589 UDP-glucose 6-dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase, N-terminal; UDP-glucose/GDP-mannose dehydrogenase, dimerisation; UDP-glucose/GDP-mannose dehydrogenase, C-terminal
YP_005716032.1	PFAM: Protein of unknown function DUF3095; KEGG: smd:Smed_4588 hypothetical protein
YP_005716033.1	KEGG: smd:Smed_4587 beta-lactamase domain-containing protein; PFAM: Beta-lactamase-like; SMART: Beta-lactamase-like
YP_005716034.1	PFAM: Polysaccharide deacetylase; KEGG: smd:Smed_4586 polysaccharide deacetylase
YP_005716035.1	PFAM: Glycosyl transferase, group 1; KEGG: smd:Smed_4585 glycosyl transferase group 1
YP_005716036.1	PFAM: Mechanosensitive ion channel MscS; KEGG: smd:Smed_4584 MscS mechanosensitive ion channel
YP_005716037.1	PFAM: Glycosyl transferase, group 1; KEGG: smd:Smed_4583 glycosyl transferase group 1
YP_005716038.1	PFAM: Sulfotransferase domain; KEGG: smd:Smed_4582 sulfotransferase
YP_005716039.1	PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: smd:Smed_4581 DegT/DnrJ/EryC1/StrS aminotransferase
YP_005716040.1	PFAM: N-acetylglucosaminyl phosphatidylinositol deacetylase; KEGG: smd:Smed_4580 LmbE family protein
YP_005716041.1	PFAM: Bacterial sugar transferase; KEGG: smd:Smed_4579 sugar transferase
YP_005716042.1	PFAM: Polysaccharide export protein; Soluble ligand binding domain; KEGG: smd:Smed_4578 polysaccharide export protein
YP_005716043.1	PFAM: Polysaccharide biosynthesis protein; KEGG: smd:Smed_4577 polysaccharide biosynthesis protein
YP_005716044.1	PFAM: Sulfotransferase domain; KEGG: smd:Smed_4576 sulfotransferase
YP_005716045.1	PFAM: Glycosyl transferase, group 1; KEGG: smd:Smed_4575 glycosyl transferase group 1
YP_005716046.1	KEGG: smd:Smed_4574 hypothetical protein
YP_005716047.1	PFAM: Lipopolysaccharide biosynthesis; KEGG: smd:Smed_4573 lipopolysaccharide biosynthesis protein
YP_005716048.1	KEGG: smd:Smed_4572 hypothetical protein
YP_005716049.1	PFAM: Sulfotransferase domain; KEGG: smd:Smed_4571 putative enzyme
YP_005716050.1	KEGG: smd:Smed_4570 putative ATPGTP-binding protein
YP_005716051.1	KEGG: smd:Smed_4569 formyl transferase domain-containing protein; PFAM: Formyl transferase, C-terminal; Formyl transferase, N-terminal
YP_005716052.1	PFAM: Polysaccharide biosynthesis protein CapD-like; KEGG: smd:Smed_4568 polysaccharide biosynthesis protein CapD
YP_005716053.1	PFAM: Glycosyl transferase, group 1; KEGG: smd:Smed_4567 glycosyl transferase group 1
YP_005716054.1	PFAM: Glycosyl transferase, group 1; KEGG: smd:Smed_4566 glycosyl transferase group 1
YP_005716055.1	KEGG: smd:Smed_4565 hemolysin-type calcium-binding region
YP_005716056.1	PFAM: NAD-dependent epimerase/dehydratase; KEGG: smd:Smed_4564 NAD-dependent epimerase/dehydratase
YP_005716057.1	PFAM: ATP-grasp fold, DUF201-type; KEGG: smd:Smed_4563 carbamoyl phosphate synthase-like protein
YP_005716058.1	PFAM: PHP, C-terminal; KEGG: smd:Smed_4562 phosphotransferase domain-containing protein
YP_005716059.1	TIGRFAM: 3(2),5 -bisphosphate nucleotidase, bacterial; KEGG: smd:Smed_4561 3'(2'),5'-bisphosphate nucleotidase; PFAM: Inositol monophosphatase
YP_005716060.1	PFAM: Adenylylsulphate kinase, C-terminal; Protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, domain 2; TIGRFAM: Sulphate adenylyltransferase, large subunit; Small GTP-binding protein; Adenylylsulphate kinase, C-terminal; HAMAP: Adenylylsulphate kinase, C-terminal; Sulphate adenylyltransferase, large subunit; KEGG: smd:Smed_6191 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein
YP_005716061.1	PFAM: Phosphoadenosine phosphosulphate reductase; TIGRFAM: Sulphate adenylyltransferase, small subunit; HAMAP: Sulphate adenylyltransferase, small subunit; KEGG: smd:Smed_6192 sulfate adenylyltransferase subunit 2
YP_005716062.1	PFAM: ROK; KEGG: smd:Smed_4558 ROK family protein
YP_005716063.1	PFAM: Bacterial extracellular solute-binding, family 1; KEGG: smd:Smed_4557 extracellular solute-binding protein
YP_005716064.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_4556 binding-protein-dependent transport systems inner membrane component
YP_005716065.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_4555 binding-protein-dependent transport systems inner membrane component
YP_005716066.1	PFAM: Sugar isomerase (SIS); KEGG: smd:Smed_4554 sugar isomerase (SIS)
YP_005716067.1	PFAM: Carbohydrate/purine kinase; KEGG: smd:Smed_4553 ribokinase-like domain-containing protein
YP_005716068.1	PFAM: ABC transporter-like; Transport-associated OB, type 2; KEGG: smd:Smed_4552 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_005716069.1	KEGG: smd:Smed_4551 regulatory protein IclR; PFAM: Transcription regulator IclR, N-terminal; SMART: Transcription regulator IclR, N-terminal
YP_005716070.1	PFAM: Endoribonuclease L-PSP; KEGG: rhi:NGR_b11780 translation initiation inhibitor
YP_005716071.1	PFAM: ABC transporter-like; KEGG: rhi:NGR_b11770 putative ATP-binding component of ABC transporter; SMART: ATPase, AAA+ type, core
YP_005716072.1	KEGG: rhi:NGR_b11760 putative permease component of ABC transporter; TIGRFAM: Amino acid ABC transporter, permease protein, 3-TM domain, His/Glu/Gln/Arg/opine family; PFAM: Binding-protein-dependent transport systems inner membrane component
YP_005716073.1	KEGG: rhi:NGR_b11750 putative permease component of ABC transporter; TIGRFAM: Amino acid ABC transporter, permease protein, 3-TM domain, His/Glu/Gln/Arg/opine family; PFAM: Binding-protein-dependent transport systems inner membrane component
YP_005716074.1	KEGG: smd:Smed_4546 extracellular solute-binding protein; PFAM: Extracellular solute-binding protein, family 3; SMART: Extracellular solute-binding protein, family 3
YP_005716075.1	PFAM: Alanine racemase, N-terminal; KEGG: smd:Smed_4545 alanine racemase domain-containing protein
YP_005716076.1	KEGG: smd:Smed_4544 sulfate ABC transporter, periplasmic sulfate-binding protein; TIGRFAM: Thiosulphate-binding protein; PFAM: Bacterial extracellular solute-binding, family 1
YP_005716077.1	KEGG: smd:Smed_4543 sulfate ABC transporter, inner membrane subunit CysT; TIGRFAM: Sulphate ABC transporter, permease protein CysT; Sulphate ABC transporter permease protein 2; PFAM: Binding-protein-dependent transport systems inner membrane component
YP_005716078.1	KEGG: smd:Smed_4542 sulfate ABC transporter, inner membrane subunit CysW; TIGRFAM: Sulphate ABC transporter, permease protein CysW; Sulphate ABC transporter permease protein 2; PFAM: Binding-protein-dependent transport systems inner membrane component
YP_005716079.1	SMART: ATPase, AAA+ type, core; TIGRFAM: Sulphate transport system permease protein 1; KEGG: smd:Smed_4541 sulfate ABC transporter, ATPase subunit; PFAM: ABC transporter-like
YP_005716080.1	KEGG: smd:Smed_4540 FAD linked oxidase domain-containing protein; PFAM: FAD-linked oxidase, C-terminal; FAD linked oxidase, N-terminal
YP_005716081.1	KEGG: smd:Smed_4539 RES domain-containing protein; PFAM: RES; SMART: RES
YP_005716082.1	KEGG: smd:Smed_4538 hypothetical protein
YP_005716083.1	PFAM: Crotonase, core; KEGG: smd:Smed_4537 enoyl-CoA hydratase
YP_005716084.1	KEGG: smd:Smed_4536 hydroxymethylglutaryl-CoA lyase; PFAM: Pyruvate carboxyltransferase
YP_005716085.1	PFAM: Carbamoyl-phosphate synthetase, large subunit, ATP-binding; Biotin carboxylase, C-terminal; Carbamoyl-phosphate synthase, large subunit, N-terminal; Biotin/lipoyl attachment; KEGG: smd:Smed_4535 carbamoyl-phosphate synthase L chain ATP-binding; SMART: Biotin carboxylase, C-terminal
YP_005716086.1	PFAM: Endoribonuclease L-PSP; KEGG: smd:Smed_4534 endoribonuclease L-PSP
YP_005716087.1	KEGG: smd:Smed_4533 propionyl-CoA carboxylase; PFAM: Carboxyl transferase
YP_005716088.1	KEGG: smd:Smed_4532 acyl-CoA dehydrogenase domain-containing protein; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA dehydrogenase, N-terminal
YP_005716089.1	TIGRFAM: Carbohydrate kinase, thermoresistant glucokinase; KEGG: smd:Smed_4531 carbohydrate kinase; PFAM: Shikimate kinase
YP_005716090.1	KEGG: smd:Smed_4530 XRE family transcriptional regulator; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3
YP_005716091.1	PFAM: TfuA-like, core; KEGG: smd:Smed_4529 TfuA domain-containing protein
YP_005716092.1	KEGG: smd:Smed_4528 response regulator receiver/ANTAR domain-containing protein; PFAM: ANTAR; Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain
YP_005716093.1	KEGG: smd:Smed_4527 putative nitrate transport protein
YP_005716094.1	KEGG: smd:Smed_4969 mandelate racemase/muconate lactonizing protein; PFAM: Mandelate racemase/muconate lactonizing enzyme, C-terminal; SMART: Mandelate racemase/muconate lactonizing enzyme, C-terminal
YP_005716095.1	KEGG: smd:Smed_4970 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase; PFAM: Fumarylacetoacetase, C-terminal-like
YP_005716096.1	KEGG: smd:Smed_4971 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR
YP_005716097.1	PFAM: MaoC-like dehydratase; KEGG: smd:Smed_4972 dehydratase
YP_005716098.1	PFAM: Oxidoreductase, N-terminal; KEGG: smd:Smed_4973 oxidoreductase domain-containing protein
YP_005716099.1	PFAM: Rhamnose mutarotase; KEGG: smd:Smed_4974 hypothetical protein
YP_005716100.1	PFAM: Mandelate racemase/muconate lactonizing enzyme, C-terminal; Mandelate racemase/muconate lactonizing enzyme, N-terminal; KEGG: smd:Smed_4975 mandelate racemase/muconate lactonizing protein; SMART: Mandelate racemase/muconate lactonizing enzyme, C-terminal
YP_005716101.1	PFAM: ABC transporter-like; Transport-associated OB, type 2; KEGG: smd:Smed_4976 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_005716102.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_4977 binding-protein-dependent transport systems inner membrane component
YP_005716103.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_4978 binding-protein-dependent transport systems inner membrane component
YP_005716104.1	KEGG: smd:Smed_4979 extracellular solute-binding protein
YP_005716105.1	KEGG: smd:Smed_4980 regulatory protein IclR; PFAM: Transcription regulator IclR, C-terminal; Transcription regulator IclR, N-terminal; SMART: Transcription regulator IclR, N-terminal
YP_005716106.1	PFAM: Amidohydrolase 2; KEGG: smd:Smed_4981 amidohydrolase 2
YP_005716107.1	PFAM: Polysaccharide deacetylase; KEGG: smd:Smed_4982 polysaccharide deacetylase
YP_005716108.1	PFAM: MmgE/PrpD; KEGG: smd:Smed_4983 MmgE/PrpD family protein
YP_005716109.1	KEGG: smd:Smed_4984 extracellular solute-binding protein; PFAM: Extracellular solute-binding protein, family 3; SMART: Extracellular solute-binding protein, family 3
YP_005716110.1	PFAM: ABC transporter-like; KEGG: smd:Smed_4985 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_005716111.1	KEGG: smd:Smed_4986 polar amino acid ABC transporter, inner membrane subunit; TIGRFAM: Amino acid ABC transporter, permease protein, 3-TM domain, His/Glu/Gln/Arg/opine family; PFAM: Binding-protein-dependent transport systems inner membrane component
YP_005716112.1	PFAM: Lyase 1, N-terminal; TIGRFAM: Argininosuccinate lyase; HAMAP: Argininosuccinate lyase; KEGG: smd:Smed_4987 argininosuccinate lyase
YP_005716113.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: smd:Smed_4988 LysR family transcriptional regulator
YP_005716114.1	PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: smd:Smed_4989 GCN5-related N-acetyltransferase
YP_005716115.1	SMART: Glycoside hydrolase, family 25 subgroup; manually curated; KEGG: smd:Smed_4990 glycoside hydrolase family protein; PFAM: Glycoside hydrolase, family 25
YP_005716116.1	KEGG: smd:Smed_4991 hypothetical protein
YP_005716117.1	KEGG: smd:Smed_4992 L-carnitine dehydratase/bile acid-inducible protein F; PFAM: CoA-transferase family III
YP_005716118.1	KEGG: rhi:NGR_b10550 conjugal transfer protein TraA; TIGRFAM: Ti-type conjugative transfer relaxase TraA; PFAM: MobA/MobL protein
YP_005716119.1	TIGRFAM: Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; KEGG: rhi:NGR_b13940 phosphomannose isomerase; PFAM: N-acylglucosamine 2-epimerase; Mannose-6-phosphate isomerase, type II, C-terminal; Nucleotidyl transferase
YP_005716120.1	KEGG: rhi:NGR_b13930 phosphomannomutase/phosphoglucomutase; PFAM: Alpha-D-phosphohexomutase, alpha/beta/alpha domain II; Alpha-D-phosphohexomutase, alpha/beta/alpha domain III; Alpha-D-phosphohexomutase, alpha/beta/alpha domain I; Alpha-D-phosphohexomutase, C-terminal
YP_005716121.1	KEGG: smd:Smed_4826 two component LuxR family transcriptional regulator; PFAM: Transcription regulator LuxR, C-terminal; SMART: Transcription regulator LuxR, C-terminal
YP_005716122.1	KEGG: smd:Smed_4822 cyclic nucleotide-binding protein; PFAM: Cyclic nucleotide-binding domain; SMART: Cyclic nucleotide-binding domain
YP_005716123.1	PFAM: Glycosyl transferase, group 1; KEGG: rhi:NGR_b13910 putative glycosyl transferase
YP_005716124.1	PFAM: Glycosyl transferase, group 1; KEGG: rhi:NGR_b13890 LPS side chain defect: mannosyl transferase
YP_005716125.1	PFAM: Glycosyl transferase, group 1; KEGG: rhi:NGR_b13880 putative glycosyl transferase
YP_005716126.1	KEGG: rhi:NGR_b13870 probable glycosyl transferase; manually curated; PFAM: Glycosyl transferase, family 2
YP_005716127.1	PFAM: Polysaccharide export protein; KEGG: rhi:NGR_b13860 exopolysaccharide production protein ExoF2 precursor
YP_005716129.1	manually curated; KEGG: rhi:NGR_b13830 exopolysaccharide production protein ExoY; PFAM: Bacterial sugar transferase
YP_005716130.1	PFAM: Lipopolysaccharide biosynthesis; Cobyrinic acid a,c-diamide synthase; KEGG: rhi:NGR_b13780 CPSC/CapB subfamily ATPase
YP_005716131.1	KEGG: rhi:NGR_b13570 hypothetical protein
YP_005716132.1	PFAM: Glycosyl transferase, family 8; KEGG: aex:Astex_2217 glycosyl transferase family 8
YP_005716133.1	PFAM: C-methyltransferase; Methyltransferase type 12; KEGG: fre:Franean1_6563 C-methyltransferase
YP_005716134.1	PFAM: Glycosyl transferase, family 2; KEGG: npu:Npun_F0047 glycosyl transferase family protein
YP_005716135.1	PFAM: Protein of unknown function DUF707; KEGG: met:M446_5439 hypothetical protein
YP_005716136.1	KEGG: cyn:Cyan7425_2161 hypothetical protein
YP_005716137.1	PFAM: C-methyltransferase; Methyltransferase type 12; KEGG: rrs:RoseRS_2391 methyltransferase type 12
YP_005716138.1	PFAM: C-methyltransferase; Methyltransferase type 11; Methyltransferase hyptothetical; KEGG: fri:FraEuI1c_0184 C-methyltransferase
YP_005716139.1	PFAM: NAD-dependent epimerase/dehydratase; KEGG: rca:Rcas_3093 NAD-dependent epimerase/dehydratase
YP_005716140.1	TIGRFAM: Glucose-1-phosphate cytidylyltransferase; KEGG: rca:Rcas_3094 glucose-1-phosphate cytidylyltransferase; PFAM: Nucleotidyl transferase
YP_005716141.1	PFAM: N-acetylglucosaminyl phosphatidylinositol deacetylase; KEGG: cyn:Cyan7425_2160 LmbE family protein
YP_005716142.1	PFAM: FG-GAP; KEGG: rca:Rcas_2753 FG-GAP repeat-containing protein
YP_005716143.1	TIGRFAM: Methyltransferase FkbM; KEGG: cyn:Cyan7425_2162 methyltransferase FkbM family
YP_005716144.1	PFAM: Methyltransferase type 11; KEGG: csa:Csal_0104 methyltransferase type 11
YP_005716145.1	PFAM: Glycosyl transferase, group 1; KEGG: cyn:Cyan7425_2159 glycosyl transferase group 1
YP_005716146.1	KEGG: rba:RB1819 udp-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase
YP_005716147.1	TIGRFAM: Nucleotide sugar dehydrogenase; KEGG: met:M446_6571 nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase, N-terminal; UDP-glucose/GDP-mannose dehydrogenase, C-terminal; UDP-glucose/GDP-mannose dehydrogenase, dimerisation
YP_005716148.1	PFAM: Polysaccharide biosynthesis protein; KEGG: gvi:gll1781 polysaccharide transporter
YP_005716149.1	KEGG: rhi:NGR_b13370 putative transmembrane protein
YP_005716150.1	KEGG: rhi:NGR_b18490 probable two-component response regulator protein; PFAM: Transcription regulator LuxR, C-terminal; SMART: Transcription regulator LuxR, C-terminal; Signal transduction response regulator, receiver domain
YP_005716151.1	KEGG: smd:Smed_4850 acyl carrier protein; TIGRFAM: Acyl carrier protein (ACP); PFAM: Phosphopantetheine-binding
YP_005716152.1	manually curated; KEGG: smd:Smed_5256 hypothetical protein
YP_005716153.1	manually curated; KEGG: rlt:Rleg2_1401 hypothetical protein
YP_005716154.1	KEGG: smd:Smed_5311 hypothetical protein
YP_005716155.1	KEGG: smd:Smed_3631 hypothetical protein
YP_005716156.1	KEGG: rhi:NGR_c14040 hypothetical protein
YP_005716157.1	KEGG: smd:Smed_1685 hypothetical protein
YP_005716158.1	KEGG: rhi:NGR_c11510 succinoglycan biosynthesis protein ExoI; PFAM: Staphylococcal nuclease (SNase-like); SMART: Staphylococcal nuclease (SNase-like)
YP_005716160.1	KEGG: rlt:Rleg2_2435 hypothetical protein
YP_005716161.1	KEGG: smd:Smed_1445 hypothetical protein
YP_005716162.1	manually curated; KEGG: smd:Smed_4827 hypothetical protein
YP_005716163.1	KEGG: rva:Rvan_0633 DNA ligase D; TIGRFAM: DNA ligase D; DNA polymerase LigD, ligase domain; PFAM: DNA ligase, ATP-dependent, central; DNA ligase, ATP-dependent, C-terminal; DNA primase, small subunit
YP_005716164.1	TIGRFAM: Peptidase M20B, tripeptide aminopeptidase; KEGG: smd:Smed_5042 peptidase T; PFAM: Peptidase M20; Peptidase M20, dimerisation
YP_005716165.1	KEGG: smd:Smed_5412 hypothetical protein; PFAM: Capsule synthesis protein, CapA; SMART: Capsule synthesis protein, CapA
YP_005716166.1	PFAM: ABC transporter-like; Oligopeptide/dipeptide ABC transporter, C-terminal; KEGG: smd:Smed_5040 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_005716167.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_5039 binding-protein-dependent transport systems inner membrane component
YP_005716168.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_5038 binding-protein-dependent transport systems inner membrane component
YP_005716169.1	PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: smd:Smed_5037 extracellular solute-binding protein
YP_005716170.1	KEGG: smd:Smed_5035 hypothetical protein
YP_005716171.1	manually curated; PFAM: Helix-turn-helix type 3; KEGG: smd:Smed_5034 XRE family transcriptional regulator; SMART: Helix-turn-helix type 3
YP_005716173.1	KEGG: smd:Smed_4439 hypothetical protein
YP_005716174.1	KEGG: smd:Smed_4438 hypothetical protein
YP_005716177.1	KEGG: smd:Smed_1889 hypothetical protein
YP_005716178.1	KEGG: smd:Smed_1897 phage terminase small subunit
YP_005716179.1	KEGG: rhi:NGR_c11540 hypothetical protein
YP_005716180.1	PFAM: Antibiotic biosynthesis monooxygenase; KEGG: rsk:RSKD131_3673 antibiotic biosynthesis monooxygenase
YP_005716181.1	KEGG: rsp:RSP_3506 autoinducer-2 (AI-2) kinase; PFAM: Carbohydrate kinase, FGGY, N-terminal; Carbohydrate kinase, FGGY, C-terminal
YP_005716182.1	PFAM: Sugar-binding domain, putative; KEGG: rsh:Rsph17029_3150 DeoR family transcriptional regulator
YP_005716183.1	PFAM: ABC transporter-like; KEGG: rsp:RSP_3503 sugar ABC transporter ATPase; SMART: ATPase, AAA+ type, core
YP_005716184.1	PFAM: ABC transporter permease; KEGG: rsp:RSP_3502 ABC sugar transporter, inner membrane subunit
YP_005716185.1	PFAM: ABC transporter permease; KEGG: rsk:RSKD131_3668 inner-membrane translocator
YP_005716186.1	KEGG: rsh:Rsph17029_3146 ABC sugar transporter, periplasmic binding protein
YP_005716187.1	PFAM: Class II aldolase/adducin, N-terminal; KEGG: rsk:RSKD131_3666 short chain dehydrogenase
YP_005716188.1	PFAM: Capsule polysaccharide biosynthesis; KEGG: smd:Smed_4993 capsule polysaccharide biosynthesis protein
YP_005716189.1	KEGG: ran:Riean_0743 lactoylglutathione lyase
YP_005716190.1	PFAM: Membrane bound O-acyl transferase, MBOAT; KEGG: pla:Plav_3071 membrane bound O-acyl transferase MBOAT family protein
YP_005716192.1	KEGG: scl:sce8222 hypothetical protein
YP_005716193.1	TIGRFAM: FkbH domain; HAD-superfamily phosphatase, subfamily IIIC; KEGG: xau:Xaut_0884 FkbH like protein
YP_005716194.1	PFAM: Haemolysin-type calcium-binding repeat; KEGG: rhi:NGR_c05540 hypothetical protein
YP_005716195.1	KEGG: rhi:NGR_b09550 putative nucleotidyltransferase protein; PFAM: Nucleotidyl transferase domain; SMART: HEPN
YP_005716196.1	PFAM: Capsule polysaccharide biosynthesis; KEGG: smd:Smed_4993 capsule polysaccharide biosynthesis protein
YP_005716197.1	PFAM: ABC-2 type transporter; KEGG: smd:Smed_4994 ABC-2 type transporter
YP_005716198.1	KEGG: smd:Smed_4995 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_005716199.1	KEGG: smd:Smed_4996 capsule polysaccharide export protein-like protein
YP_005716200.1	TIGRFAM: KpsF/GutQ; KEGG: smd:Smed_0192 KpsF/GutQ family protein; PFAM: Sugar isomerase (SIS); Cystathionine beta-synthase, core
YP_005716201.1	KEGG: smd:Smed_5000 hemolysin-type calcium-binding region
YP_005716202.1	KEGG: smd:Smed_1865 hypothetical protein
YP_005716203.1	KEGG: smd:Smed_6514 hypothetical protein
YP_005716204.1	KEGG: smd:Smed_6513 transposase IS66; manually curated; PFAM: Transposase, IS66
YP_005716205.1	PFAM: Transposase (putative), IS66 Orf2-like; KEGG: smd:Smed_6512 IS66 Orf2 family protein
YP_005716206.1	PFAM: Transposase IS3/IS911family; KEGG: smd:Smed_6511 transposase IS3/IS911 family protein
YP_005716207.1	KEGG: rhi:NGR_c11430 possible protease
YP_005716208.1	manually curated; KEGG: rhi:NGR_c10300 hypothetical protein
YP_005716209.1	KEGG: rme:Rmet_5726 chloramphenicol acetyltransferase
YP_005716210.1	KEGG: sil:SPO2650 FkbM family methyltransferase; TIGRFAM: Methyltransferase FkbM; PFAM: Methyltransferase small
YP_005716211.1	PFAM: Capsule polysaccharide biosynthesis; Glycosyltransferase, capsule biosynthesis, predicted; KEGG: cti:RALTA_B1095 putative glycosyltransferase involved in capsule biosynthesis, similar to KpsS
YP_005716213.1	PFAM: Capsule polysaccharide biosynthesis; KEGG: rhi:NGR_b09380 putative capsule polysaccharide biosynthesis protein
YP_005716214.1	PFAM: ABC-2 type transporter; KEGG: smd:Smed_5003 ABC-2 type transporter
YP_005716215.1	PFAM: Ketopantoate hydroxymethyltransferase; KEGG: smd:Smed_5004 ketopantoate hydroxymethyltransferase
YP_005716216.1	KEGG: smd:Smed_5005 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region
YP_005716217.1	KEGG: smd:Smed_5006 Rieske (2Fe-2S) domain-containing protein; TIGRFAM: MocE Rieske [2Fe-2S]; PFAM: Rieske [2Fe-2S] iron-sulphur domain
YP_005716218.1	PFAM: Fatty acid desaturase, type 1; KEGG: smd:Smed_5007 fatty acid desaturase
YP_005716219.1	PFAM: HTH transcriptional regulator, LacI; KEGG: smd:Smed_5008 regulatory protein LacI
YP_005716220.1	PFAM: AsmA; KEGG: smd:Smed_5009 AsmA family protein
YP_005716221.1	KEGG: smd:Smed_5010 hypothetical protein
YP_005716222.1	PFAM: ABC transporter-like; ABC transporter, transmembrane domain; KEGG: smd:Smed_5011 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_005716223.1	KEGG: smd:Smed_5012 hypothetical protein
YP_005716225.1	PFAM: Acyltransferase 3; KEGG: smd:Smed_5014 acyltransferase 3
YP_005716226.1	SMART: Cystathionine beta-synthase, core; TIGRFAM: KpsF/GutQ; KEGG: smd:Smed_5015 KpsF/GutQ family protein; PFAM: Sugar isomerase (SIS); Cystathionine beta-synthase, core
YP_005716227.1	KEGG: smd:Smed_5016 putative membrane-anchored protein
YP_005716228.1	PFAM: Glycosyl transferase, family 39; KEGG: smd:Smed_5017 glycosyl transferase family protein
YP_005716229.1	KEGG: smd:Smed_5018 hypothetical protein
YP_005716230.1	KEGG: smd:Smed_5019 putative glycosyltransferase protein
YP_005716231.1	KEGG: smd:Smed_5020 putative membrane-anchored protein
YP_005716232.1	KEGG: smd:Smed_5021 putative 3-deoxy-manno-octulosonate cytidylyltransferase (CMP KDO transferase) protein
YP_005716233.1	PFAM: Domain of unknown function DUF23; KEGG: smd:Smed_5022 hypothetical protein
YP_005716234.1	PFAM: Protein of unknown function DUF1022; KEGG: smd:Smed_5023 hypothetical protein
YP_005716235.1	KEGG: smd:Smed_5024 hypothetical protein
YP_005716236.1	PFAM: Heavy metal transport/detoxification protein; KEGG: smd:Smed_5025 heavy metal transport/detoxification protein
YP_005716237.1	KEGG: rhi:NGR_c11410 hypothetical protein
YP_005716238.1	PFAM: Protein of unknown function DUF454; KEGG: smd:Smed_3577 hypothetical protein
YP_005716241.1	KEGG: azl:AZL_008050 hypothetical protein
YP_005716242.1	PFAM: Protein of unknown function DUF1643; KEGG: smd:Smed_1928 hypothetical protein
YP_005716244.1	PFAM: Phospholipase/carboxylesterase; KEGG: smd:Smed_5249 phospholipase/carboxylesterase
YP_005716245.1	PFAM: Protein of unknown function DUF982; KEGG: rlt:Rleg2_2444 protein of unknown function DUF982
YP_005716246.1	PFAM: Protein of unknown function DUF982; KEGG: rhi:NGR_b17290 hypothetical protein
YP_005716247.1	KEGG: smd:Smed_4412 hypothetical protein
YP_005716249.1	KEGG: smd:Smed_4852 hypothetical protein
YP_005716250.1	KEGG: smd:Smed_1904 hypothetical protein
YP_005716251.1	KEGG: smd:Smed_1905 GcrA cell cycle regulator; manually curated; PFAM: GcrA cell cycle regulator
YP_005716253.1	PFAM: Protein of unknown function DUF982; KEGG: smd:Smed_1912 hypothetical protein
YP_005716254.1	manually curated; KEGG: smd:Smed_5213 hypothetical protein
YP_005716255.1	PFAM: Adenylyl cyclase class-3/4/guanylyl cyclase; Tetratricopeptide TPR2; KEGG: rhi:NGR_c28120 adenylate cyclase 3; SMART: Adenylyl cyclase class-3/4/guanylyl cyclase
YP_005716257.1	PFAM: Bacterial extracellular solute-binding, family 1; KEGG: smd:Smed_3578 extracellular solute-binding protein
YP_005716258.1	PFAM: HTH transcriptional regulator, LacI; Periplasmic binding protein/LacI transcriptional regulator; KEGG: smd:Smed_3579 periplasmic binding protein/LacI transcriptional regulator
YP_005716259.1	PFAM: Uncharacterised conserved protein UCP014753; KEGG: smd:Smed_3580 hypothetical protein
YP_005716260.1	KEGG: smd:Smed_3581 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding
YP_005716261.1	PFAM: Xylose isomerase, TIM barrel domain; KEGG: smd:Smed_3582 xylose isomerase domain-containing protein
YP_005716262.1	PFAM: GCN5-related N-acetyltransferase (GNAT) domain; Siderophore biosynthesis protein, conserved domain; KEGG: rhi:NGR_c13960 putative aminoglycoside N(6')-acetyltransferase
YP_005716263.1	PFAM: Protein of unknown function DUF1109; KEGG: mlo:mll3492 hypothetical protein
YP_005716264.1	KEGG: mlo:mll3493 RNA polymerase sigma factor; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2
YP_005716265.1	PFAM: Protein of unknown function DUF2282, transmembrane; KEGG: bra:BRADO7096 hypothetical protein
YP_005716266.1	KEGG: rlg:Rleg_5938 hypothetical protein; HAMAP: Uncharacterised protein family UPF0276; PFAM: Uncharacterised protein family UPF0276
YP_005716267.1	PFAM: Protein of unknown function DUF2063; KEGG: bra:BRADO7098 hypothetical protein
YP_005716268.1	PFAM: Uncharacterised protein family YphA; KEGG: rpe:RPE_1950 DoxX family protein
YP_005716269.1	KEGG: avi:Avi_0660 hypothetical protein
YP_005716270.1	TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate cyclase, predicted; KEGG: smd:Smed_1471 diguanylate cyclase; SMART: Diguanylate cyclase, predicted
YP_005716271.1	PFAM: PRC-barrel; KEGG: smd:Smed_2876 PRC-barrel domain-containing protein
YP_005716272.1	PFAM: NADPH-dependent FMN reductase; KEGG: rhi:NGR_b01800 hypothetical protein
YP_005716273.1	SMART: Signal transduction response regulator, receiver domain; KEGG: smd:Smed_5777 response regulator receiver protein
YP_005716274.1	SMART: MCP methyltransferase, CheR-type; Signal transduction histidine kinase, HWE region; PAS; PAC motif; TIGRFAM: PAS; KEGG: smd:Smed_5776 putative PAS/PAC sensor protein; PFAM: Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase; MCP methyltransferase, CheR-type, SAM-binding domain, C-terminal; MCP methyltransferase, CheR-type, all-alpha domain, N-terminal; PAS fold-4; Signal transduction histidine kinase, HWE region
YP_005716275.1	KEGG: smd:Smed_5775 CheB methylesterase; PFAM: Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase
YP_005716276.1	KEGG: smd:Smed_4830 response regulator receiver protein
YP_005716277.1	KEGG: smd:Smed_4435 hypothetical protein
YP_005716278.1	PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: smd:Smed_3597 short chain dehydrogenase; SMART: Polyketide synthase/Fatty acid synthase, KR
YP_005716279.1	PFAM: Mandelate racemase/muconate lactonizing enzyme, N-terminal; Mandelate racemase/muconate lactonizing enzyme, C-terminal; KEGG: smd:Smed_3598 galactonate dehydratase; SMART: Mandelate racemase/muconate lactonizing enzyme, C-terminal
YP_005716280.1	KEGG: smd:Smed_3599 GntR domain-containing protein; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: GntR, C-terminal; HTH transcriptional regulator, GntR
YP_005716281.1	PFAM: Periplasmic binding protein/LacI transcriptional regulator; KEGG: smd:Smed_3600 monosaccharide-transporting ATPase
YP_005716282.1	PFAM: ABC transporter-like; KEGG: smd:Smed_3601 L-arabinose transporter ATP-binding protein; SMART: ATPase, AAA+ type, core
YP_005716283.1	PFAM: ABC transporter permease; KEGG: smd:Smed_3602 L-arabinose transporter permease protein
YP_005716284.1	PFAM: Aminoglycoside phosphotransferase; KEGG: gym:GYMC10_2392 aminoglycoside phosphotransferase
YP_005716285.1	KEGG: smd:Smed_3603 putative ABC transporter periplasmic sugar-binding protein
YP_005716286.1	PFAM: ABC transporter-like; KEGG: smd:Smed_3604 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_005716287.1	PFAM: ABC transporter permease; KEGG: smd:Smed_3605 monosaccharide-transporting ATPase
YP_005716288.1	PFAM: Sugar-binding domain, putative; RNA polymerase sigma factor 70, region 4 type 2; KEGG: smd:Smed_3606 DeoR family transcriptional regulator
YP_005716289.1	PFAM: NADP-dependent oxidoreductase domain; KEGG: smd:Smed_3607 aldo/keto reductase
YP_005716290.1	KEGG: smd:Smed_3608 FAD dependent oxidoreductase; PFAM: FAD dependent oxidoreductase
YP_005716291.1	PFAM: Deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase; KEGG: smd:Smed_3609 deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase
YP_005716292.1	KEGG: smd:Smed_3610 carbohydrate kinase FGGY; PFAM: Carbohydrate kinase, FGGY, N-terminal; Carbohydrate kinase, FGGY, C-terminal
YP_005716293.1	KEGG: smd:Smed_3611 glucose-methanol-choline oxidoreductase; PFAM: Glucose-methanol-choline oxidoreductase, N-terminal; Glucose-methanol-choline oxidoreductase, C-terminal
YP_005716294.1	KEGG: tbd:Tbd_1371 TPR repeat-containing protein
YP_005716295.1	PFAM: Protein of unknown function DUF1127; KEGG: smd:Smed_5176 hypothetical protein
YP_005716296.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: xau:Xaut_1015 LysR family transcriptional regulator
YP_005716297.1	KEGG: gdj:Gdia_0886 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR
YP_005716298.1	PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: bgf:BC1003_3820 short-chain dehydrogenase/reductase SDR
YP_005716299.1	KEGG: smd:Smed_2989 isochorismatase hydrolase; manually curated; PFAM: Isochorismatase-like
YP_005716300.1	PFAM: Protein of unknown function DUF899, thioredoxin-like; KEGG: mlo:mll2522 hypothetical protein
YP_005716301.1	KEGG: smd:Smed_3633 L-fuculose-phosphate aldolase; PFAM: Class II aldolase/adducin, N-terminal
YP_005716302.1	PFAM: Carbohydrate kinase, FGGY, N-terminal; KEGG: smd:Smed_3634 carbohydrate kinase FGGY
YP_005716303.1	PFAM: Xylose isomerase, TIM barrel domain; KEGG: smd:Smed_3635 xylose isomerase domain-containing protein
YP_005716304.1	PFAM: ABC transporter permease; KEGG: smd:Smed_3636 inner-membrane translocator
YP_005716305.1	PFAM: ABC transporter permease; KEGG: rhi:NGR_b11550 putative permease component of ABC transporter
YP_005716306.1	PFAM: ABC transporter-like; KEGG: rhi:NGR_b11540 ribose import ATP-binding protein RbsA 2; SMART: ATPase, AAA+ type, core
YP_005716307.1	KEGG: smd:Smed_3639 putative ABC transporter periplasmic sugar-binding protein
YP_005716308.1	KEGG: smd:Smed_3640 regulatory protein LacI; PFAM: HTH transcriptional regulator, LacI; SMART: HTH transcriptional regulator, LacI
YP_005716309.1	TIGRFAM: GNAT-acetyltransferase; KEGG: smd:Smed_3641 glutathione synthase; PFAM: GCN5-related N-acetyltransferase (GNAT) domain
YP_005716310.1	TIGRFAM: Asparagine synthase family amidotransferase; Asparagine synthase, glutamine-hydrolyzing; KEGG: smd:Smed_3642 asparagine synthase (glutamine-hydrolyzing); PFAM: Asparagine synthase
YP_005716311.1	KEGG: smd:Smed_3643 GntR domain-containing protein; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: GntR, C-terminal; HTH transcriptional regulator, GntR
YP_005716312.1	PFAM: ABC transporter-like; Oligopeptide/dipeptide ABC transporter, C-terminal; KEGG: smd:Smed_3644 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_005716313.1	PFAM: Binding-protein-dependent transport systems inner membrane component; Oligopeptide/dipeptide ABC transporter, C-terminal; ABC transporter-like; KEGG: smd:Smed_3645 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_005716314.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_3646 binding-protein-dependent transport systems inner membrane component
YP_005716315.1	PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: smd:Smed_3647 4-phytase
YP_005716316.1	KEGG: smd:Smed_4431 3-demethylubiquinone-9 3-methyltransferase
YP_005716317.1	KEGG: smd:Smed_4432 hypothetical protein
YP_005716318.1	KEGG: smd:Smed_3665 peptidase M42 family protein; TIGRFAM: Peptidase M42, hydrolase; PFAM: Peptidase M42
YP_005716319.1	KEGG: smd:Smed_3666 hypothetical protein
YP_005716320.1	KEGG: smd:Smed_3667 hypothetical protein
YP_005716321.1	PFAM: Protein of unknown function DUF995; KEGG: smd:Smed_3668 hypothetical protein
YP_005716322.1	KEGG: smd:Smed_3669 putative cellulase H precursor protein
YP_005716323.1	PFAM: Protein of unknown function DUF995; KEGG: smd:Smed_3670 hypothetical protein
YP_005716324.1	PFAM: Glycosyl transferase, family 2; KEGG: smd:Smed_3671 putative cellulose synthase protein
YP_005716325.1	TIGRFAM: UDP-glucose 4-epimerase; KEGG: smd:Smed_3672 UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase
YP_005716326.1	KEGG: smd:Smed_3673 NAD-dependent epimerase/dehydratase; PFAM: NAD-dependent epimerase/dehydratase
YP_005716327.1	KEGG: smd:Smed_3674 helix-turn-helix domain-containing protein; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain
YP_005716328.1	PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: smd:Smed_3675 short-chain dehydrogenase/reductase SDR; SMART: Polyketide synthase/Fatty acid synthase, KR
YP_005716329.1	PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: smd:Smed_3676 TetR family transcriptional regulator
YP_005716330.1	PFAM: Protein of unknown function DUF1236; KEGG: smd:Smed_3677 hypothetical protein
YP_005716331.1	KEGG: rlt:Rleg2_3486 gluconolactonase; PFAM: SMP-30/Gluconolaconase/LRE-like region
YP_005716332.1	KEGG: smd:Smed_3678 hypothetical protein
YP_005716333.1	SMART: ATPase-like, ATP-binding domain; KEGG: smd:Smed_3679 hypothetical protein
YP_005716334.1	KEGG: smd:Smed_3680 stage II sporulation E family protein; PFAM: Sporulation stage II, protein E C-terminal; HAMP linker domain; Cache; SMART: Protein phosphatase 2C-like; HAMP linker domain
YP_005716335.1	PFAM: Methyltransferase type 11; KEGG: smd:Smed_3681 methyltransferase type 11
YP_005716336.1	KEGG: smd:Smed_3682 hypothetical protein
YP_005716337.1	TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; KEGG: smd:Smed_3683 diguanylate cyclase/phosphodiesterase; SMART: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted
YP_005716338.1	TIGRFAM: Mannonate dehydratase; KEGG: smd:Smed_3684 mannonate dehydratase; PFAM: Mannonate dehydratase
YP_005716339.1	KEGG: smd:Smed_3685 alcohol dehydrogenase; PFAM: Alcohol dehydrogenase GroES-like; Alcohol dehydrogenase, C-terminal
YP_005716340.1	KEGG: smd:Smed_3686 TRAP dicarboxylate transporter, DctM subunit; TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit
YP_005716341.1	PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: smd:Smed_3687 tripartite ATP-independent periplasmic transporter DctQ
YP_005716342.1	KEGG: smd:Smed_3688 TRAP dicarboxylate transporter, DctP subunit; TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: Extracellular solute-binding protein, family 7, bacteria
YP_005716343.1	KEGG: smd:Smed_3689 GntR domain-containing protein; PFAM: HTH transcriptional regulator, GntR; GntR, C-terminal; SMART: HTH transcriptional regulator, GntR; GntR, C-terminal
YP_005716344.1	PFAM: Major facilitator superfamily MFS-1; KEGG: smd:Smed_3690 major facilitator transporter
YP_005716345.1	KEGG: smd:Smed_3692 ectoine utilization protein EutE; TIGRFAM: Ectoine utilization protein EutE; PFAM: Succinylglutamate desuccinylase/aspartoacylase
YP_005716346.1	KEGG: rhi:NGR_b23250 probable dipeptidase; TIGRFAM: Ectoine utilization protein EutD; PFAM: Creatinase; Peptidase M24, structural domain
YP_005716347.1	TIGRFAM: Ectoine utilization protein EutC; KEGG: smd:Smed_3694 ectoine utilization protein EutC; PFAM: Ornithine cyclodeaminase/mu-crystallin
YP_005716348.1	KEGG: smd:Smed_3695 threonine dehydratase; TIGRFAM: Ectoine utilization protein EutB; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit
YP_005716349.1	KEGG: smd:Smed_3696 ectoine utilization protein EutA; TIGRFAM: Ectoine utilization protein EutA; PFAM: Asp/Glu/hydantoin racemase
YP_005716350.1	KEGG: smd:Smed_3697 ectoine/hydroxyectoine ABC transporter permease protein EhuD; TIGRFAM: Ectoine/hydroxyectoine ABC transporter, permease protein EhuD; Amino acid ABC transporter, permease protein, 3-TM domain, His/Glu/Gln/Arg/opine family; PFAM: Binding-protein-dependent transport systems inner membrane component
YP_005716351.1	KEGG: smd:Smed_3698 ectoine/hydroxyectoine ABC transporter permease protein EhuC; TIGRFAM: Ectoine/hydroxyectoine ABC transporter, permease protein EhuC; Amino acid ABC transporter, permease protein, 3-TM domain, His/Glu/Gln/Arg/opine family; PFAM: Binding-protein-dependent transport systems inner membrane component
YP_005716352.1	TIGRFAM: Ectoine/hydroxyEctoine ABC transporter solute-binding protein; PFAM: Extracellular solute-binding protein, family 3; KEGG: smd:Smed_3699 ectoine/hydroxyectoine ABC transporter solute-binding protein; SMART: Extracellular solute-binding protein, family 3
YP_005716353.1	SMART: ATPase, AAA+ type, core; TIGRFAM: Ectoine/hydroxyectoine ABC transporter, ATP-binding protein; KEGG: smd:Smed_3700 ectoine/hydroxyectoine ABC transporter ATP-binding protein; PFAM: ABC transporter-like
YP_005716354.1	KEGG: smd:Smed_3701 GntR family transcriptional regulator; PFAM: Aminotransferase, class I/classII; HTH transcriptional regulator, GntR; SMART: HTH transcriptional regulator, GntR
YP_005716355.1	KEGG: rhi:NGR_b23340 probable transcriptional regulator protein, AsnC family; PFAM: Transcription regulator AsnC-type, C-terminal; SMART: Transcription regulator AsnC-type
YP_005716356.1	KEGG: smd:Smed_3703 aldehyde dehydrogenase; PFAM: Aldehyde dehydrogenase domain
YP_005716357.1	KEGG: rhi:NGR_b23380 hypothetical protein; PFAM: Aminotransferase class-III
YP_005716358.1	KEGG: rhi:NGR_b23390 alcohol dehydrogenase; PFAM: Alcohol dehydrogenase, C-terminal; Alcohol dehydrogenase GroES-like
YP_005716359.1	PFAM: Glutathione S-transferase, N-terminal; Glutathione S-transferase, C-terminal; KEGG: smd:Smed_3706 glutathione S-transferase domain-containing protein
YP_005716360.1	PFAM: ABC transporter-like; Transport-associated OB, type 2; KEGG: smd:Smed_3707 glycerol-3-phosphate transporter ATP-binding subunit; SMART: ATPase, AAA+ type, core
YP_005716361.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_3708 binding-protein-dependent transport systems inner membrane component
YP_005716362.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_3709 binding-protein-dependent transport systems inner membrane component
YP_005716363.1	PFAM: Bacterial extracellular solute-binding, family 1; KEGG: smd:Smed_3710 extracellular solute-binding protein
YP_005716364.1	PFAM: NAD-dependent epimerase/dehydratase; KEGG: smd:Smed_3711 NAD-dependent epimerase/dehydratase
YP_005716365.1	PFAM: Protein of unknown function DUF2269, transmembrane; KEGG: smd:Smed_3712 hypothetical protein
YP_005716366.1	KEGG: rlg:Rleg_5863 hypothetical protein
YP_005716367.1	TIGRFAM: Conserved hyprothetical protein CHP00028; KEGG: rlg:Rleg_5864 PIN domain protein family protein
YP_005716368.1	KEGG: smd:Smed_3713 substrate-binding region of ABC-type glycine betaine transport system; TIGRFAM: ABC transporter, choline, substrate-binding protein; PFAM: ABC-type glycine betaine transport system, substrate-binding domain
YP_005716369.1	KEGG: smd:Smed_3714 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR
YP_005716370.1	PFAM: Acetone carboxylase, gamma subunit-related; KEGG: smd:Smed_3715 acetone carboxylase gamma subunit
YP_005716371.1	PFAM: Hydantoinase B/oxoprolinase; KEGG: smd:Smed_3716 hydantoinase B/oxoprolinase
YP_005716372.1	KEGG: smd:Smed_3717 5-oxoprolinase (ATP-hydrolyzing); PFAM: Hydantoinase/oxoprolinase; Hydantoinaseoxoprolinase, N-terminal
YP_005716373.1	KEGG: smd:Smed_3718 response regulator receiver protein; PFAM: Transcription regulator LuxR, C-terminal; SMART: Transcription regulator LuxR, C-terminal
YP_005716374.1	KEGG: mes:Meso_1907 twin-arginine translocation pathway signal; PFAM: Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding; Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead
YP_005716375.1	KEGG: mes:Meso_1906 (2Fe-2S)-binding; PFAM: [2Fe-2S]-binding; Ferredoxin
YP_005716376.1	KEGG: mes:Meso_1905 cytochrome c, class I; PFAM: Cytochrome c, class I
YP_005716377.1	KEGG: smd:Smed_3719 hypothetical protein
YP_005716378.1	KEGG: smd:Smed_3721 hypothetical protein
YP_005716379.1	PFAM: Oxoglutarate/iron-dependent oxygenase; KEGG: smd:Smed_3722 hypothetical protein
YP_005716380.1	PFAM: Metallo-dependent phosphatase; KEGG: smd:Smed_3723 metallophosphoesterase
YP_005716381.1	PFAM: [2Fe-2S]-binding; Ferredoxin; KEGG: rpb:RPB_4513 (2Fe-2S)-binding protein
YP_005716382.1	KEGG: rpx:Rpdx1_1071 molybdopterin dehydrogenase FAD-binding protein; PFAM: Molybdopterin dehydrogenase, FAD-binding; CO dehydrogenase flavoprotein, C-terminal
YP_005716383.1	KEGG: rpc:RPC_4640 xanthine dehydrogenase; PFAM: Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding; Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead
YP_005716384.1	PFAM: Protein of unknown function, DUF1537; KEGG: rhi:NGR_b21990 hypothetical protein
YP_005716385.1	KEGG: smd:Smed_3724 ribulose-bisphosphate carboxylase; PFAM: Ribulose bisphosphate carboxylase, large subunit, C-terminal
YP_005716386.1	KEGG: smd:Smed_3725 transcriptional regulator NanR; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: GntR, C-terminal; HTH transcriptional regulator, GntR
YP_005716387.1	KEGG: smd:Smed_3726 cellulose synthase (UDP-forming); manually curated; PFAM: Glycosyl transferase, family 2
YP_005716388.1	KEGG: smd:Smed_3727 hypothetical protein
YP_005716389.1	TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate cyclase, predicted; KEGG: smd:Smed_3728 diguanylate cyclase; SMART: Diguanylate cyclase, predicted; GAF
YP_005716390.1	KEGG: smd:Smed_3729 alcohol dehydrogenase; PFAM: Alcohol dehydrogenase, C-terminal; Alcohol dehydrogenase GroES-like
YP_005716391.1	PFAM: Transcription regulator IclR, C-terminal; Transcription regulator IclR, N-terminal; KEGG: smd:Smed_3730 regulatory protein IclR
YP_005716392.1	KEGG: smd:Smed_3731 hypothetical protein
YP_005716393.1	KEGG: smd:Smed_3732 hypothetical protein
YP_005716394.1	PFAM: Peptidase M19, renal dipeptidase; KEGG: smd:Smed_3733 membrane dipeptidase
YP_005716395.1	KEGG: smd:Smed_3734 putative ABC transporter periplasmic solute-binding protein
YP_005716396.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_3735 binding-protein-dependent transport systems inner membrane component
YP_005716397.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_3736 binding-protein-dependent transport systems inner membrane component
YP_005716398.1	PFAM: ABC transporter-like; Transport-associated OB, type 2; KEGG: smd:Smed_3737 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_005716399.1	KEGG: smd:Smed_3738 aminotransferase; PFAM: Aminotransferase class-III
YP_005716400.1	PFAM: Aldehyde dehydrogenase domain; KEGG: smd:Smed_3739 aldehyde dehydrogenase
YP_005716401.1	PFAM: Endoribonuclease L-PSP; KEGG: smd:Smed_3740 endoribonuclease L-PSP
YP_005716402.1	PFAM: Endoribonuclease L-PSP; KEGG: smd:Smed_3741 endoribonuclease L-PSP
YP_005716403.1	KEGG: smd:Smed_3742 GntR domain-containing protein; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: GntR, C-terminal; HTH transcriptional regulator, GntR
YP_005716404.1	KEGG: smd:Smed_3743 TRAP dicarboxylate transporter, DctP subunit; TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: Extracellular solute-binding protein, family 7, bacteria
YP_005716405.1	PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: smd:Smed_3744 tripartite ATP-independent periplasmic transporter DctQ
YP_005716406.1	KEGG: smd:Smed_3745 TRAP dicarboxylate transporter, DctM subunit; TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit
YP_005716407.1	KEGG: smd:Smed_3746 ribose-5-phosphate isomerase B; TIGRFAM: Ribose/galactose isomerase; Ribose 5-phosphate isomerase B; PFAM: Ribose/galactose isomerase
YP_005716408.1	PFAM: ABC transporter-like; KEGG: smd:Smed_3747 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_005716409.1	PFAM: Domain of unknown function DUF214, ABC transporter permease; KEGG: smd:Smed_3748 hypothetical protein
YP_005716410.1	KEGG: smd:Smed_3749 RND family efflux transporter MFP subunit; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD
YP_005716411.1	PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: smd:Smed_3750 TetR family transcriptional regulator
YP_005716412.1	KEGG: smd:Smed_3751 periplasmic binding protein/LacI transcriptional regulator; PFAM: Periplasmic binding protein/LacI transcriptional regulator; SMART: HTH transcriptional regulator, LacI
YP_005716413.1	PFAM: Bacterial extracellular solute-binding, family 1; KEGG: smd:Smed_3752 extracellular solute-binding protein
YP_005716414.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_3753 binding-protein-dependent transport systems inner membrane component
YP_005716415.1	PFAM: ABC transporter-like; Transport-associated OB, type 2; KEGG: smd:Smed_3754 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_005716416.1	PFAM: Inositol monophosphatase; KEGG: smd:Smed_3755 inositol-phosphate phosphatase
YP_005716417.1	PFAM: Ion transport 2; KEGG: smd:Smed_3759 ion transport 2 domain-containing protein
YP_005716418.1	KEGG: smd:Smed_3760 hypothetical protein
YP_005716419.1	KEGG: smd:Smed_3761 hypothetical protein
YP_005716420.1	KEGG: smd:Smed_3762 putative adenylate/guanylate cyclase; PFAM: Adenylyl cyclase class-3/4/guanylyl cyclase; Signal transduction response regulator, receiver domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: Adenylyl cyclase class-3/4/guanylyl cyclase; Signal transduction response regulator, receiver domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain
YP_005716421.1	KEGG: smd:Smed_3763 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain
YP_005716422.1	KEGG: smd:Smed_3764 multi-sensor hybrid histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction response regulator, receiver domain; HAMP linker domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; Signal transduction response regulator, receiver domain; PAS; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; HAMP linker domain
YP_005716423.1	KEGG: smd:Smed_3765 hypothetical protein
YP_005716424.1	KEGG: rhi:NGR_b22020 hypothetical protein
YP_005716425.1	PFAM: Oxidoreductase, N-terminal; Oxidoreductase, C-terminal; KEGG: smd:Smed_3766 oxidoreductase domain-containing protein
YP_005716426.1	PFAM: ABC transporter permease; KEGG: smd:Smed_3767 monosaccharide-transporting ATPase
YP_005716427.1	PFAM: ABC transporter-like; KEGG: smd:Smed_3768 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_005716428.1	PFAM: Uncharacterised conserved protein UCP033535, periplasmic lipoprotein; KEGG: smd:Smed_3769 hypothetical protein
YP_005716429.1	PFAM: Periplasmic binding protein/LacI transcriptional regulator; KEGG: smd:Smed_3770 periplasmic binding protein/LacI transcriptional regulator
YP_005716430.1	PFAM: NADP oxidoreductase, coenzyme F420-dependent; KEGG: smd:Smed_3771 NADP oxidoreductase coenzyme F420-dependent
YP_005716431.1	PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: smd:Smed_3772 TetR family transcriptional regulator
YP_005716432.1	KEGG: smd:Smed_3773 RND family efflux transporter MFP subunit; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD
YP_005716433.1	PFAM: Acriflavin resistance protein; KEGG: smd:Smed_3774 acriflavin resistance protein
YP_005716434.1	KEGG: smd:Smed_3775 AraC-like transcriptional regulator; PFAM: HTH transcriptional regulator, AraC, N-terminal; HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain
YP_005716435.1	KEGG: smd:Smed_3776 2Fe-2S iron-sulfur cluster binding domain-containing protein; PFAM: [2Fe-2S]-binding; Ferredoxin
YP_005716436.1	KEGG: smd:Smed_3777 aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; PFAM: Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding
YP_005716437.1	KEGG: smd:Smed_3778 hypothetical protein
YP_005716438.1	KEGG: smd:Smed_3779 hypothetical protein
YP_005716439.1	KEGG: smd:Smed_3780 hypothetical protein
YP_005716440.1	KEGG: smd:Smed_3781 hypothetical protein
YP_005716441.1	PFAM: Major facilitator superfamily MFS-1; KEGG: smd:Smed_3782 major facilitator transporter
YP_005716442.1	PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: smd:Smed_3783 TetR family transcriptional regulator
YP_005716443.1	KEGG: smd:Smed_3784 hypothetical protein
YP_005716444.1	PFAM: Protein of unknown function DUF900, hydrolase-like; KEGG: smd:Smed_3785 protein of unknown function DUF900 hydrolase family protein
YP_005716445.1	PFAM: Sulphatase-modifying factor; KEGG: smd:Smed_3787 hypothetical protein
YP_005716446.1	KEGG: mes:Meso_2472 choline/carnitine/betaine transporter; TIGRFAM: BCCT transporter; PFAM: BCCT transporter
YP_005716447.1	PFAM: Sulfatase; KEGG: smd:Smed_3805 sulfatase
YP_005716448.1	KEGG: smd:Smed_3806 hypothetical protein
YP_005716449.1	PFAM: Oxidoreductase, N-terminal; Oxidoreductase, C-terminal; KEGG: smd:Smed_3807 oxidoreductase domain-containing protein
YP_005716450.1	KEGG: smd:Smed_3808 hypothetical protein
YP_005716451.1	PFAM: ABC transporter-like; Transport-associated OB, type 2; KEGG: smd:Smed_3809 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_005716452.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_3810 binding-protein-dependent transport systems inner membrane component
YP_005716453.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_3811 binding-protein-dependent transport systems inner membrane component
YP_005716454.1	PFAM: Bacterial extracellular solute-binding, family 1; KEGG: smd:Smed_3812 extracellular solute-binding protein
YP_005716455.1	KEGG: smd:Smed_3813 alanine racemase; PFAM: Periplasmic binding protein/LacI transcriptional regulator; SMART: HTH transcriptional regulator, LacI
YP_005716456.1	KEGG: smd:Smed_3814 GntR family transcriptional regulator; PFAM: HTH transcriptional regulator, GntR; GntR, C-terminal; SMART: HTH transcriptional regulator, GntR; GntR, C-terminal
YP_005716457.1	PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: smd:Smed_3815 tripartite ATP-independent periplasmic transporter DctQ
YP_005716458.1	KEGG: smd:Smed_3816 TRAP dicarboxylate transporter, DctM subunit; TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit
YP_005716459.1	PFAM: Extracellular solute-binding protein, family 7, bacteria; KEGG: smd:Smed_3817 TRAP dicarboxylate transporter-DctP subunit
YP_005716460.1	KEGG: smd:Smed_3818 hypothetical protein; TIGRFAM: Conserved hyptotheical protein CHP03862, flavoprotein, PP4765; Conserved hypothetical protein CHP00275, flavoprotein HI0933-like; PFAM: Conserved hypothetical protein CHP00275, flavoprotein HI0933-like
YP_005716461.1	PFAM: ABC transporter permease; KEGG: smd:Smed_3819 monosaccharide-transporting ATPase
YP_005716462.1	PFAM: ABC transporter-like; KEGG: smd:Smed_3820 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_005716463.1	KEGG: smd:Smed_3821 periplasmic binding protein/LacI transcriptional regulator
YP_005716464.1	PFAM: ABC transporter permease; KEGG: smd:Smed_3822 monosaccharide-transporting ATPase
YP_005716465.1	KEGG: smd:Smed_3823 glycerone kinase; PFAM: Dak kinase
YP_005716466.1	KEGG: smd:Smed_3824 dihydroxyacetone kinase, L subunit; TIGRFAM: Dihydroxyacetone kinase, subunit L; PFAM: Dak phosphatase
YP_005716467.1	KEGG: smd:Smed_3825 glycerone kinase; PFAM: Dak kinase; RNA polymerase sigma factor 70, region 4 type 2; Sugar-binding domain, putative
YP_005716468.1	KEGG: smd:Smed_3826 dihydroxyacetone kinase, L subunit; TIGRFAM: Dihydroxyacetone kinase, subunit L; PFAM: Dak phosphatase
YP_005716469.1	KEGG: smd:Smed_3828 hypothetical protein
YP_005716470.1	KEGG: rhi:NGR_b18610 hypothetical protein
YP_005716471.1	KEGG: mes:Meso_2552 glucose sorbosone dehydrogenase
YP_005716472.1	PFAM: Adenylyl cyclase class-3/4/guanylyl cyclase; KEGG: smd:Smed_3831 adenylyl cyclase class-3/4/guanylyl cyclase; SMART: Adenylyl cyclase class-3/4/guanylyl cyclase
YP_005716473.1	KEGG: smd:Smed_3832 N-acetylneuraminate lyase; PFAM: Dihydrodipicolinate synthetase
YP_005716474.1	PFAM: Dihydrodipicolinate synthetase; KEGG: smd:Smed_3833 dihydrodipicolinate synthetase
YP_005716475.1	KEGG: smd:Smed_3834 TRAP dicarboxylate transporter, DctM subunit; TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit
YP_005716476.1	PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: smd:Smed_3835 tripartite ATP-independent periplasmic transporter DctQ
YP_005716477.1	KEGG: smd:Smed_3836 TRAP dicarboxylate transporter, DctP subunit; TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: Extracellular solute-binding protein, family 7, bacteria
YP_005716478.1	KEGG: smd:Smed_3837 transcriptional regulator NanR; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: GntR, C-terminal; HTH transcriptional regulator, GntR
YP_005716479.1	KEGG: smd:Smed_3838 hypothetical protein
YP_005716480.1	TIGRFAM: TRAP transporter solute receptor, TAXI family; KEGG: smd:Smed_3839 TRAP transporter solute receptor TAXI family protein
YP_005716481.1	manually curated; TIGRFAM: TRAP transporter, 4TM/12TM fusion protein; KEGG: smd:Smed_3840 TRAP transporter, 4TM/12TM fusion protein; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit
YP_005716482.1	KEGG: smd:Smed_3841 regulatory protein LacI; PFAM: HTH transcriptional regulator, LacI; Periplasmic binding protein/LacI transcriptional regulator; SMART: HTH transcriptional regulator, LacI
YP_005716483.1	PFAM: Xanthine/uracil/vitamin C permease; KEGG: smd:Smed_3842 xanthine/uracil/vitamin C permease
YP_005716484.1	KEGG: smd:Smed_3843 amidohydrolase; PFAM: Amidohydrolase 1
YP_005716485.1	PFAM: Protein of unknown function DUF81; KEGG: smd:Smed_3844 hypothetical protein
YP_005716486.1	KEGG: smd:Smed_3845 opine dehydrogenase; PFAM: Opine dehydrogenase; Glycerol-3-phosphate dehydrogenase, NAD-dependent, N-terminal
YP_005716487.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: smd:Smed_3846 LysR family transcriptional regulator
YP_005716488.1	PFAM: Bacterial extracellular solute-binding, family 1; KEGG: smd:Smed_3847 extracellular solute-binding protein
YP_005716489.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_3848 binding-protein-dependent transport systems inner membrane component
YP_005716490.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_3849 binding-protein-dependent transport systems inner membrane component
YP_005716491.1	SMART: ATPase, AAA+ type, core; TIGRFAM: Spermidine/putrescine ABC transporter ATP-binding subunit; KEGG: smd:Smed_3850 spermidine/putrescine ABC transporter ATPase subunit; PFAM: ABC transporter-like; Transport-associated OB, type 2
YP_005716492.1	PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: smd:Smed_3851 hypothetical protein
YP_005716493.1	KEGG: smd:Smed_3852 hypothetical protein
YP_005716494.1	KEGG: smd:Smed_3853 uncharacterized peroxidase-related enzyme; TIGRFAM: Uncharacterised peroxidase-related; PFAM: Carboxymuconolactone decarboxylase
YP_005716495.1	KEGG: smd:Smed_3854 hypothetical protein; PFAM: Aminotransferase class-III
YP_005716496.1	PFAM: Sugar isomerase (SIS); Helix-turn-helix protein RpiR; KEGG: smd:Smed_3855 RpiR family transcriptional regulator
YP_005716497.1	PFAM: Protein of unknown function DUF849, prokaryotic; KEGG: smd:Smed_3856 hypothetical protein
YP_005716498.1	KEGG: smd:Smed_3857 hypothetical protein
YP_005716499.1	KEGG: fal:FRAAL0702 hypothetical protein
YP_005716500.1	KEGG: smd:Smed_3858 hypothetical protein
YP_005716501.1	PFAM: Major facilitator superfamily MFS-1; KEGG: smd:Smed_3859 major facilitator transporter
YP_005716502.1	PFAM: Peroxiredoxin, OsmC-like protein; KEGG: smd:Smed_3860 OsmC family protein
YP_005716503.1	KEGG: smd:Smed_3861 proline racemase; PFAM: Proline racemase
YP_005716504.1	PFAM: Domain of unknown function DUF521; Domain of unknown function DUF126; KEGG: smd:Smed_3862 hypothetical protein
YP_005716505.1	KEGG: smd:Smed_3863 hydroxyproline-2-epimerase; PFAM: Proline racemase
YP_005716506.1	KEGG: smd:Smed_3864 D-amino-acid dehydrogenase; PFAM: FAD dependent oxidoreductase
YP_005716507.1	PFAM: ABC transporter-like; KEGG: smd:Smed_3865 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_005716508.1	KEGG: smd:Smed_3866 polar amino acid ABC transporter, inner membrane subunit; TIGRFAM: Amino acid ABC transporter, permease protein, 3-TM domain, His/Glu/Gln/Arg/opine family; PFAM: Binding-protein-dependent transport systems inner membrane component
YP_005716509.1	KEGG: smd:Smed_3867 polar amino acid ABC transporter, inner membrane subunit; TIGRFAM: Amino acid ABC transporter, permease protein, 3-TM domain, His/Glu/Gln/Arg/opine family; PFAM: Binding-protein-dependent transport systems inner membrane component
YP_005716510.1	KEGG: smd:Smed_3868 extracellular solute-binding protein; PFAM: Extracellular solute-binding protein, family 3; SMART: Extracellular solute-binding protein, family 3
YP_005716511.1	KEGG: smd:Smed_3869 aldehyde dehydrogenase; PFAM: Aldehyde dehydrogenase domain
YP_005716512.1	KEGG: smd:Smed_3870 malate/L-lactate dehydrogenase; PFAM: Malate/L-lactate dehydrogenase
YP_005716513.1	PFAM: Protein of unknown function DUF1232; KEGG: smd:Smed_3871 hypothetical protein
YP_005716514.1	KEGG: smd:Smed_3873 dihydrodipicolinate synthetase; PFAM: Dihydrodipicolinate synthetase
YP_005716515.1	KEGG: smd:Smed_3874 GntR family transcriptional regulator; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: HTH transcriptional regulator, GntR; GntR, C-terminal
YP_005716516.1	KEGG: smd:Smed_3875 putative adenylate/guanylate cyclase; PFAM: Adenylyl cyclase class-3/4/guanylyl cyclase; SMART: Adenylyl cyclase class-3/4/guanylyl cyclase
YP_005716517.1	PFAM: Activator of Hsp90 ATPase homologue 1-like; KEGG: rhi:NGR_b03360 hypothetical protein
YP_005716518.1	PFAM: Protein of unknown function DUF1003; KEGG: smd:Smed_3877 hypothetical protein
YP_005716519.1	KEGG: smd:Smed_3878 hypothetical protein
YP_005716520.1	KEGG: smd:Smed_3879 hypothetical protein
YP_005716521.1	PFAM: Coenzyme F420 hydrogenase/dehydrogenase beta subunit, C-terminal; Coenzyme F420 hydrogenase/dehydrogenase beta subunit, N-terminal; KEGG: smd:Smed_3880 hypothetical protein
YP_005716522.1	KEGG: smd:Smed_3881 hypothetical protein
YP_005716523.1	KEGG: smd:Smed_3882 phosphoglycerate mutase; PFAM: Histidine phosphatase superfamily, clade-1; SMART: Histidine phosphatase superfamily, clade-1
YP_005716524.1	PFAM: Myo-inositol-1-phosphate synthase; Myo-inositol-1-phosphate synthase, GAPDH-like; KEGG: smd:Smed_3883 myo-inositol-1-phosphate synthase
YP_005716525.1	KEGG: smd:Smed_3884 hypothetical protein
YP_005716526.1	PFAM: Oxidoreductase, N-terminal; Oxidoreductase, C-terminal; KEGG: smd:Smed_3885 oxidoreductase domain-containing protein
YP_005716527.1	KEGG: smd:Smed_3886 alcohol dehydrogenase; PFAM: Alcohol dehydrogenase GroES-like; Alcohol dehydrogenase, C-terminal; SMART: Polyketide synthase, enoylreductase
YP_005716528.1	KEGG: smd:Smed_3887 NAD-dependent epimerase/dehydratase; PFAM: NAD-dependent epimerase/dehydratase
YP_005716529.1	KEGG: smd:Smed_3888 NAD-dependent epimerase/dehydratase; PFAM: NAD-dependent epimerase/dehydratase
YP_005716530.1	PFAM: Glycosyl transferase, group 1; KEGG: smd:Smed_3889 glycosyl transferase group 1
YP_005716531.1	KEGG: smd:Smed_3890 hypothetical protein
YP_005716532.1	KEGG: smd:Smed_3891 hypothetical protein
YP_005716533.1	KEGG: smd:Smed_3892 hypothetical protein
YP_005716534.1	KEGG: smd:Smed_3893 NAD-dependent epimerase/dehydratase; PFAM: NAD-dependent epimerase/dehydratase
YP_005716535.1	PFAM: Methyltransferase type 11; KEGG: smd:Smed_3894 methyltransferase type 11
YP_005716536.1	KEGG: smd:Smed_3897 hypothetical protein
YP_005716537.1	KEGG: smd:Smed_3898 hypothetical protein
YP_005716538.1	PFAM: ABC transporter-like; Transport-associated OB, type 2; KEGG: smd:Smed_2311 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_005716539.1	KEGG: smd:Smed_2312 hypothetical protein
YP_005716540.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_2313 binding-protein-dependent transport systems inner membrane component
YP_005716541.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_2314 binding-protein-dependent transport systems inner membrane component
YP_005716542.1	PFAM: Bacterial extracellular solute-binding, family 1; KEGG: smd:Smed_2315 extracellular solute-binding protein
YP_005716543.1	KEGG: smd:Smed_2316 alanine racemase; PFAM: Periplasmic binding protein/LacI transcriptional regulator; HTH transcriptional regulator, LacI; SMART: HTH transcriptional regulator, LacI
YP_005716544.1	KEGG: smd:Smed_3899 putative nutrient deprivation-induced protein
YP_005716545.1	KEGG: smd:Smed_3900 putative nutrient deprivation-induced protein
YP_005716546.1	KEGG: smd:Smed_3901 putative nutrient deprivation-induced protein
YP_005716547.1	KEGG: smd:Smed_3902 hypothetical protein
YP_005716548.1	KEGG: smd:Smed_3903 transport-associated; PFAM: Transport-associated; SMART: Transport-associated and nodulation domain, bacteria
YP_005716549.1	KEGG: smd:Smed_3904 hypothetical protein
YP_005716550.1	PFAM: Cupin 2, conserved barrel; KEGG: smd:Smed_3906 cupin 2 domain-containing protein
YP_005716551.1	KEGG: rhi:NGR_b05560 epoxide hydrolase; PFAM: Epoxide hydrolase, N-terminal; Alpha/beta hydrolase fold-1
YP_005716552.1	KEGG: smd:Smed_3907 two component transcriptional regulator; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal
YP_005716553.1	KEGG: smd:Smed_3908 integral membrane sensor signal transduction histidine kinase; PFAM: ATPase-like, ATP-binding domain; HAMP linker domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; HAMP linker domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain
YP_005716554.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: smd:Smed_3909 glyoxalase/bleomycin resistance protein/dioxygenase
YP_005716555.1	PFAM: Alpha/beta hydrolase fold-1; KEGG: smd:Smed_3910 alpha/beta hydrolase fold
YP_005716556.1	KEGG: rhi:NGR_b02420 putative AraC family transcriptional regulator; PFAM: ThiJ/PfpI; HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain
YP_005716557.1	PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: rhi:NGR_b02400 probable short-chain dehydrogenase
YP_005716559.1	PFAM: Cytochrome c assembly protein, transmembrane domain; Redoxin; KEGG: rhi:NGR_b02390 putative cytochrome biogenesis protein
YP_005716560.1	PFAM: ThiJ/PfpI; KEGG: smd:Smed_3911 ThiJ/PfpI domain-containing protein
YP_005716561.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: smd:Smed_3912 LysR family transcriptional regulator
YP_005716562.1	KEGG: smd:Smed_3913 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR
YP_005716563.1	KEGG: smd:Smed_3914 4-oxalocrotonate tautomerase; TIGRFAM: 4-oxalocrotonate tautomerase, bacteria/archaea; PFAM: 4-oxalocrotonate tautomerase
YP_005716564.1	TIGRFAM: Coenzyme PQQ biosynthesis protein E, bacteria; PFAM: Radical SAM; KEGG: smd:Smed_3915 pyrroloquinoline quinone biosynthesis protein PqqE; SMART: Elongator protein 3/MiaB/NifB
YP_005716565.1	KEGG: smd:Smed_3916 coenzyme PQQ synthesis D; TIGRFAM: Coenzyme PQQ synthesis D, bacteria; HAMAP: Coenzyme PQQ synthesis protein D
YP_005716566.1	PFAM: TENA/THI-4 protein/Coenzyme PQQ biosynthesis protein C; TIGRFAM: Coenzyme PQQ biosynthesis protein C; HAMAP: Pyrroloquinoline-quinone synthase; KEGG: smd:Smed_3917 pyrroloquinoline quinone biosynthesis protein PqqC
YP_005716567.1	KEGG: smd:Smed_3918 pyrroloquinoline quinone biosynthesis protein PqqB; TIGRFAM: Coenzyme PQQ biosynthesis protein B; HAMAP: Coenzyme PQQ synthesis protein B
YP_005716568.1	manually curated; TIGRFAM: Coenzyme PQQ biosynthesis protein A; KEGG: rhi:NGR_b03260 coenzyme PQQ synthesis protein A; PFAM: Coenzyme PQQ biosynthesis protein A
YP_005716569.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: smd:Smed_3919 LysR family transcriptional regulator
YP_005716570.1	KEGG: smd:Smed_3920 fructose-1,6-bisphosphatase; PFAM: Fructose-1,6-bisphosphatase class 1/Sedoheputulose-1,7-bisphosphatase
YP_005716571.1	KEGG: smd:Smed_3921 phosphoribulokinase; PFAM: Phosphoribulokinase/uridine kinase
YP_005716572.1	SMART: Transketolase-like, pyrimidine-binding domain; TIGRFAM: Transketolase, bacterial-like; KEGG: smd:Smed_3922 transketolase; PFAM: Transketolase, N-terminal; Transketolase-like, pyrimidine-binding domain; Transketolase, C-terminal
YP_005716573.1	TIGRFAM: Fructose-bisphosphate aldolase, class II, Calvin cycle subtype; Ketose-bisphosphate aldolase, class-II; KEGG: smd:Smed_3923 fructose-1,6-bisphosphate aldolase; PFAM: Ketose-bisphosphate aldolase, class-II
YP_005716574.1	HAMAP: Ribulose bisphosphate carboxylase, large subunit; KEGG: smd:Smed_3924 ribulose bisophosphate carboxylase; PFAM: Ribulose bisphosphate carboxylase, large subunit, C-terminal; Ribulose bisphosphate carboxylase, large subunit, N-terminal
YP_005716575.1	PFAM: Ribulose bisphosphate carboxylase, small chain; KEGG: smd:Smed_3925 ribulose-bisphosphate carboxylase; SMART: Ribulose bisphosphate carboxylase, small chain
YP_005716576.1	TIGRFAM: CbxX/CfqX, monofunctional; PFAM: ATPase, AAA-type, core; KEGG: smd:Smed_3926 CbxX/CfqX monofunctional; SMART: ATPase, AAA+ type, core
YP_005716577.1	TIGRFAM: Ribulose-phosphate 3-epimerase; KEGG: smd:Smed_3927 ribulose-phosphate 3-epimerase; PFAM: Ribulose-phosphate 3-epimerase
YP_005716578.1	PFAM: Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant; KEGG: smd:Smed_3928 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen
YP_005716579.1	PFAM: Glutathione-dependent formaldehyde-activating, GFA; TIGRFAM: S-(hydroxymethyl)glutathione synthase; HAMAP: Glutathione-dependent formaldehyde-activating enzyme; KEGG: smd:Smed_3930 glutathione-dependent formaldehyde-activating enzyme
YP_005716580.1	KEGG: smd:Smed_3931 ABC-2 type transporter; TIGRFAM: Alcohol ABC transporter, permease protein; PFAM: ABC-2 type transporter
YP_005716581.1	SMART: ATPase, AAA+ type, core; TIGRFAM: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system; KEGG: smd:Smed_3932 ABC transporter related; PFAM: ABC transporter-like
YP_005716582.1	KEGG: smd:Smed_3933 ABC transporter related; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core
YP_005716583.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_3934 binding-protein-dependent transport systems inner membrane component
YP_005716584.1	KEGG: smd:Smed_3935 putative ABC transporter periplasmic solute-binding protein
YP_005716585.1	KEGG: smd:Smed_3936 hypothetical protein
YP_005716586.1	TIGRFAM: PQQ-dependent catabolism-associated beta-propeller protein; YVTN beta-propeller repeat; PFAM: Lactonase, 7-bladed beta propeller; KEGG: smd:Smed_3937 YVTN beta-propeller repeat-containing protein; SMART: WD40 repeat
YP_005716587.1	TIGRFAM: ABC transporter, substrate binding protein, PQQ-dependent alcohol dehydrogenase system; KEGG: smd:Smed_3938 hypothetical protein
YP_005716588.1	PFAM: Protein of unknown function DUF2380; KEGG: smd:Smed_3939 hypothetical protein
YP_005716590.1	TIGRFAM: PQQ-dependent catabolism-associated CXXCW motif; KEGG: smd:Smed_3940 hypothetical protein
YP_005716591.1	TIGRFAM: Quinoprotein dehydrogenase-associated; PFAM: Extracellular solute-binding protein, family 3; KEGG: smd:Smed_3941 extracellular solute-binding protein; SMART: Extracellular solute-binding protein, family 3
YP_005716592.1	TIGRFAM: C-type cytochrome, methanol metabolism-related; KEGG: smd:Smed_3942 putative cytochrome c protein
YP_005716593.1	TIGRFAM: PQQ-dependent dehydrogenase, methanol/ethanol family; KEGG: smd:Smed_3943 pyrrolo-quinoline quinone; PFAM: PQQ-dependent enzyme, N-terminal; Pyrrolo-quinoline quinone repeat; PQQ-dependent enzyme, C-terminal
YP_005716594.1	PFAM: Cytochrome c, class I; KEGG: smd:Smed_3944 cytochrome c class I
YP_005716595.1	TIGRFAM: S-formylglutathione hydrolase; KEGG: smd:Smed_3945 S-formylglutathione hydrolase; PFAM: Putative esterase
YP_005716596.1	KEGG: smd:Smed_3946 S-(hydroxymethyl)glutathione dehydrogenase; TIGRFAM: Alcohol dehydrogenase class III/S-(hydroxymethyl)glutathione dehydrogenase; PFAM: Alcohol dehydrogenase GroES-like; Alcohol dehydrogenase, C-terminal
YP_005716597.1	KEGG: smd:Smed_3947 hypothetical protein
YP_005716598.1	KEGG: smd:Smed_3948 beta-lactamase domain-containing protein; PFAM: Beta-lactamase-like; SMART: Beta-lactamase-like
YP_005716599.1	PFAM: Sulphur oxidation protein SoxZ; KEGG: smd:Smed_3949 sulphur oxidation protein SoxZ
YP_005716600.1	KEGG: smd:Smed_3950 hypothetical protein
YP_005716601.1	KEGG: smd:Smed_3951 hypothetical protein
YP_005716602.1	KEGG: smd:Smed_3952 histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; Signal transduction response regulator, receiver domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; Signal transduction response regulator, receiver domain
YP_005716603.1	KEGG: smd:Smed_3953 hypothetical protein; PFAM: FIST domain, N-terminal; FIST C domain; SMART: FIST domain, N-terminal
YP_005716604.1	KEGG: smd:Smed_3954 two component LuxR family transcriptional regulator; PFAM: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal; SMART: Transcription regulator LuxR, C-terminal; Signal transduction response regulator, receiver domain
YP_005716605.1	KEGG: smd:Smed_3955 hypothetical protein
YP_005716606.1	PFAM: Helix-turn-helix protein RpiR; KEGG: smd:Smed_3957 RpiR family transcriptional regulator
YP_005716607.1	PFAM: Dual specificity phosphatase, catalytic domain; KEGG: smd:Smed_3958 dual specificity protein phosphatase
YP_005716608.1	PFAM: Inositol monophosphatase; KEGG: smd:Smed_3959 inositol-phosphate phosphatase
YP_005716609.1	KEGG: smd:Smed_3960 ABC transporter periplasmic solute-binding protein
YP_005716610.1	KEGG: smd:Smed_3961 ABC transporter periplasmic solute-binding protein
YP_005716611.1	PFAM: ABC transporter-like; Transport-associated OB, type 2; KEGG: smd:Smed_3962 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_005716612.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_3963 binding-protein-dependent transport systems inner membrane component
YP_005716613.1	KEGG: smd:Smed_3964 periplasmic binding protein/LacI transcriptional regulator; PFAM: HTH transcriptional regulator, LacI; Periplasmic binding protein/LacI transcriptional regulator; SMART: HTH transcriptional regulator, LacI
YP_005716614.1	KEGG: smd:Smed_3965 sodium-dependent inorganic phosphate (Pi) transporter; TIGRFAM: Na/Pi-cotransporter; PFAM: Na/Pi-cotransporter; PhoU
YP_005716615.1	PFAM: Metallo-dependent phosphatase; KEGG: smd:Smed_3966 metallophosphoesterase
YP_005716616.1	PFAM: Dual specificity phosphatase, catalytic domain; KEGG: smd:Smed_3967 dual specificity protein phosphatase
YP_005716617.1	KEGG: smd:Smed_3968 inositol-phosphate phosphatase; manually curated; PFAM: Inositol monophosphatase
YP_005716618.1	PFAM: Protein of unknown function, DUF1537; KEGG: smd:Smed_3980 hypothetical protein
YP_005716619.1	KEGG: smd:Smed_3981 GntR domain-containing protein; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: HTH transcriptional regulator, GntR; GntR, C-terminal
YP_005716620.1	KEGG: smd:Smed_3982 iron-containing alcohol dehydrogenase; PFAM: Alcohol dehydrogenase, iron-type
YP_005716621.1	PFAM: Pyridoxal phosphate (active vitamin B6) biosynthesis PdxA; TIGRFAM: Pyridoxal phosphate (active vitamin B6) biosynthesis PdxA; HAMAP: Pyridoxal phosphate (active vitamin B6) biosynthesis PdxA; KEGG: smd:Smed_3983 4-hydroxythreonine-4-phosphate dehydrogenase
YP_005716622.1	KEGG: smd:Smed_3984 hypothetical protein
YP_005716623.1	PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: smd:Smed_3985 extracellular solute-binding protein
YP_005716624.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_3986 binding-protein-dependent transport systems inner membrane component
YP_005716625.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_3987 binding-protein-dependent transport systems inner membrane component
YP_005716626.1	PFAM: ABC transporter-like; Oligopeptide/dipeptide ABC transporter, C-terminal; KEGG: smd:Smed_3988 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_005716627.1	PFAM: Dihydrodipicolinate synthetase; KEGG: smd:Smed_3989 dihydrodipicolinate synthetase
YP_005716628.1	PFAM: Protein of unknown function DUF2243, membrane; KEGG: smd:Smed_3995 hypothetical protein
YP_005716629.1	PFAM: Amidohydrolase 2; KEGG: smd:Smed_3997 amidohydrolase 2
YP_005716630.1	PFAM: Amidohydrolase 2; KEGG: smd:Smed_3998 amidohydrolase 2
YP_005716631.1	KEGG: smd:Smed_3999 UbiD family decarboxylase; TIGRFAM: Carboxylyase-related; PFAM: Carboxylyase-related
YP_005716632.1	KEGG: smd:Smed_4000 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; TIGRFAM: Phenylacrylic acid decarboxylase; PFAM: Flavoprotein
YP_005716633.1	KEGG: smd:Smed_4001 uracil-xanthine permease; TIGRFAM: Xanthine/uracil permease; Xanthine permease; PFAM: Xanthine/uracil/vitamin C permease
YP_005716634.1	KEGG: smd:Smed_4002 cobalamin synthesis protein P47K; PFAM: Cobalamin (vitamin B12) biosynthesis CobW-like; Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal; SMART: Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal
YP_005716635.1	KEGG: smd:Smed_4003 aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; PFAM: Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding; Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead
YP_005716636.1	KEGG: smd:Smed_4004 2Fe-2S iron-sulfur cluster binding domain-containing protein; PFAM: [2Fe-2S]-binding; Ferredoxin
YP_005716637.1	KEGG: smd:Smed_4005 molybdopterin dehydrogenase FAD-binding; PFAM: Molybdopterin dehydrogenase, FAD-binding; CO dehydrogenase flavoprotein, C-terminal
YP_005716638.1	KEGG: smd:Smed_4006 GntR family transcriptional regulator; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: GntR, C-terminal
YP_005716639.1	KEGG: smd:Smed_4007 amidohydrolase 3; PFAM: Amidohydrolase 3
YP_005716640.1	PFAM: Basic membrane lipoprotein; KEGG: smd:Smed_4008 basic membrane lipoprotein
YP_005716641.1	PFAM: ABC transporter permease; KEGG: smd:Smed_4009 inner-membrane translocator
YP_005716642.1	PFAM: ABC transporter permease; KEGG: smd:Smed_4010 inner-membrane translocator
YP_005716643.1	PFAM: ABC transporter-like; KEGG: smd:Smed_4011 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_005716644.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: smd:Smed_4012 LysR family transcriptional regulator
YP_005716645.1	TIGRFAM: Putative addiction module antidote protein, CC2985; KEGG: tin:Tint_3251 putative transcriptional regulator, CopG/Arc/MetJ family
YP_005716646.1	PFAM: Plasmid stabilisation system; KEGG: vei:Veis_2290 plasmid stabilization system protein
YP_005716647.1	PFAM: Glycosyl transferase, group 1; KEGG: smd:Smed_4020 glycosyl transferase group 1
YP_005716648.1	PFAM: Amylo-alpha-1,6-glucosidase; KEGG: smd:Smed_4021 amylo-alpha-16-glucosidase
YP_005716649.1	KEGG: smd:Smed_4022 dihydroxy-acid dehydratase; PFAM: Dihydroxy-acid/6-phosphogluconate dehydratase
YP_005716650.1	PFAM: Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase; KEGG: smd:Smed_4023 hypothetical protein
YP_005716651.1	KEGG: smd:Smed_4024 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
YP_005716652.1	PFAM: Drug/metabolite transporter; KEGG: smd:Smed_4025 hypothetical protein
YP_005716653.1	KEGG: smd:Smed_4026 ABC transporter related; PFAM: ABC transporter-like; Oligopeptide/dipeptide ABC transporter, C-terminal; SMART: ATPase, AAA+ type, core
YP_005716654.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_4027 binding-protein-dependent transport systems inner membrane component
YP_005716655.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_4028 binding-protein-dependent transport systems inner membrane component
YP_005716656.1	PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: smd:Smed_4029 extracellular solute-binding protein
YP_005716657.1	KEGG: smd:Smed_4030 hypothetical protein
YP_005716658.1	KEGG: smd:Smed_4031 GntR domain-containing protein; PFAM: HTH transcriptional regulator, GntR; GntR, C-terminal; SMART: HTH transcriptional regulator, GntR; GntR, C-terminal
YP_005716659.1	KEGG: smd:Smed_4032 GntR family transcriptional regulator; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: HTH transcriptional regulator, GntR; GntR, C-terminal
YP_005716660.1	PFAM: Protein of unknown function DUF81; KEGG: amr:AM1_4804 hypothetical protein
YP_005716661.1	PFAM: Flavin-containing monooxygenase-like; KEGG: smd:Smed_4033 putative monooxygenase protein
YP_005716662.1	KEGG: smd:Smed_4035 fis family GAF modulated sigma54 specific transcriptional regulator; PFAM: RNA polymerase sigma factor 54, interaction; Helix-turn-helix, Fis-type; SMART: ATPase, AAA+ type, core
YP_005716663.1	PFAM: FAD dependent oxidoreductase; KEGG: smd:Smed_4036 hydroxyglutarate oxidase
YP_005716664.1	KEGG: smd:Smed_4037 putative dehydrogenase protein; TIGRFAM: Glucose-6-phosphate dehydrogenase-related, F420-dependent; PFAM: Luciferase-like, subgroup
YP_005716665.1	PFAM: Glycosyl hydrolase, family 13, catalytic domain; KEGG: smd:Smed_4038 alpha amylase catalytic region; SMART: Glycosyl hydrolase, family 13, subfamily, catalytic domain
YP_005716666.1	KEGG: smd:Smed_4040 FAD linked oxidase domain-containing protein; PFAM: Protein of unknown function DUF1362; FAD linked oxidase, N-terminal; D-arabinono-1,4-lactone oxidase
YP_005716667.1	PFAM: Protein of unknown function DUF1362; KEGG: smd:Smed_4041 hypothetical protein
YP_005716668.1	KEGG: smd:Smed_4042 thiamine pyrophosphate binding domain-containing protein; PFAM: Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain; Thiamine pyrophosphate enzyme, C-terminal TPP-binding; Thiamine pyrophosphate enzyme, central domain
YP_005716669.1	KEGG: smd:Smed_4043 phospholipase D/transphosphatidylase; PFAM: Phospholipase D/Transphosphatidylase; SMART: Phospholipase D/Transphosphatidylase
YP_005716670.1	PFAM: Lysylphosphatidylglycerol synthetase/UPF0104; KEGG: smd:Smed_4044 hypothetical protein
YP_005716671.1	PFAM: Endonuclease/exonuclease/phosphatase; KEGG: smd:Smed_4045 endonuclease/exonuclease/phosphatase
YP_005716672.1	PFAM: Protein of unknown function DUF892; KEGG: smd:Smed_4046 hypothetical protein
YP_005716673.1	KEGG: rhi:NGR_c30630 hypothetical protein
YP_005716674.1	KEGG: smd:Smed_4047 hypothetical protein
YP_005716675.1	TIGRFAM: Protein-L-isoaspartate(D-aspartate) O-methyltransferase; KEGG: smd:Smed_4048 protein-L-isoaspartate O-methyltransferase; PFAM: Erythromycin esterase; Protein-L-isoaspartate(D-aspartate) O-methyltransferase
YP_005716676.1	KEGG: rhi:NGR_c30460 hypothetical protein
YP_005716677.1	KEGG: rhi:NGR_c30470 hypothetical protein
YP_005716678.1	KEGG: rhi:NGR_c30480 hypothetical protein
YP_005716679.1	KEGG: smd:Smed_4051 hypothetical protein; HAMAP: Protein of unknown function DUF1328; PFAM: Protein of unknown function DUF1328
YP_005716680.1	KEGG: smd:Smed_4054 hypothetical protein
YP_005716681.1	KEGG: smd:Smed_4055 hypothetical protein
YP_005716682.1	PFAM: Metallo-dependent phosphatase; KEGG: smd:Smed_4056 metallophosphoesterase
YP_005716683.1	KEGG: smd:Smed_4057 alcohol dehydrogenase; PFAM: Alcohol dehydrogenase GroES-like; Alcohol dehydrogenase, C-terminal; SMART: Polyketide synthase, enoylreductase
YP_005716684.1	KEGG: smd:Smed_4058 hemolysin-type calcium-binding region
YP_005716685.1	KEGG: smd:Smed_4832 hypothetical protein
YP_005716686.1	KEGG: smd:Smed_4059 two component LuxR family transcriptional regulator; PFAM: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal; SMART: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal
YP_005716687.1	PFAM: Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain; ATPase-like, ATP-binding domain; KEGG: smd:Smed_4060 integral membrane sensor signal transduction histidine kinase
YP_005716688.1	PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: smd:Smed_4061 short chain dehydrogenase
YP_005716689.1	KEGG: smd:Smed_4062 hypothetical protein
YP_005716690.1	KEGG: smd:Smed_4063 hypothetical protein
YP_005716691.1	KEGG: smd:Smed_4064 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR
YP_005716692.1	PFAM: Periplasmic binding protein/LacI transcriptional regulator; KEGG: smd:Smed_4065 periplasmic binding protein/LacI transcriptional regulator
YP_005716693.1	PFAM: Transposase, IS4-like; KEGG: rhi:NGR_b15530 putative transposase Y4zB-like protein
YP_005716694.1	PFAM: Major facilitator superfamily MFS-1; KEGG: smd:Smed_4066 major facilitator transporter
YP_005716695.1	PFAM: Sulphate transporter; Sulphate transporter/antisigma-factor antagonist STAS; KEGG: smd:Smed_4067 sulphate transporter
YP_005716696.1	KEGG: smd:Smed_5157 amino acid carrier protein; TIGRFAM: Sodium:alanine symporter; PFAM: Sodium:alanine symporter
YP_005716697.1	PFAM: Dodecin flavoprotein; KEGG: smd:Smed_4069 hypothetical protein
YP_005716698.1	PFAM: Domain of unknown function DUF296; KEGG: sno:Snov_0411 protein of unknown function DUF296
YP_005716699.1	KEGG: smd:Smed_4071 hypothetical protein
YP_005716700.1	KEGG: smd:Smed_4074 hypothetical protein
YP_005716701.1	KEGG: cak:Caul_2180 integrase catalytic region
YP_005716702.1	KEGG: ara:Arad_1900 hypothetical protein; TIGRFAM: Putative addiction module antidote protein, CC2985; PFAM: Uncharacterised protein family UPF0156/MetJ /Arc repressor
YP_005716703.1	PFAM: Methyltransferase type 11; KEGG: smd:Smed_4078 methyltransferase type 11
YP_005716704.1	PFAM: ABC transporter-like; KEGG: smd:Smed_4079 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_005716705.1	PFAM: ABC transporter permease protein; KEGG: smd:Smed_4080 transport system permease protein
YP_005716706.1	PFAM: Periplasmic binding protein; KEGG: smd:Smed_4081 periplasmic binding protein
YP_005716707.1	PFAM: Protein of unknown function DUF1850; KEGG: mes:Meso_4069 hypothetical protein
YP_005716708.1	KEGG: mes:Meso_4068 TRAP transporter, 4TM/12TM fusion protein; TIGRFAM: TRAP transporter, 4TM/12TM fusion protein; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit
YP_005716709.1	TIGRFAM: TRAP transporter solute receptor, TAXI family; KEGG: mes:Meso_4067 TRAP transporter solute receptor TAXI family protein
YP_005716711.1	KEGG: smd:Smed_4083 AraC family transcriptional regulator; PFAM: HTH transcriptional regulator, AraC; ThiJ/PfpI; SMART: Helix-turn-helix, AraC type, DNA binding domain
YP_005716712.1	KEGG: atu:Atu3463 non-heme chloroperoxidase; PFAM: Alpha/beta hydrolase fold-1
YP_005716713.1	KEGG: atu:Atu8032 hypothetical protein
YP_005716714.1	KEGG: smd:Smed_4086 elongation factor G; PFAM: Translation elongation factor EFG/EF2, domain IV; Protein synthesis factor, GTP-binding; Translation elongation factor EFG/EF2, C-terminal; SMART: Translation elongation factor EFG/EF2, domain IV; Translation elongation factor EFG/EF2, C-terminal
YP_005716715.1	SMART: UbiC transcription regulator-associated; HTH transcriptional regulator, GntR; manually curated; TIGRFAM: Histidine utilization repressor; KEGG: rhi:NGR_b23610 probable transcriptional regulator protein, GntR family; PFAM: UbiC transcription regulator-associated; HTH transcriptional regulator, GntR
YP_005716716.1	KEGG: smd:Smed_4088 hypothetical protein
YP_005716717.1	KEGG: smd:Smed_4089 cobyrinic acid ac-diamide synthase; TIGRFAM: Plasmid partitioning protein, RepA; PFAM: Cobyrinic acid a,c-diamide synthase
YP_005716718.1	TIGRFAM: Plasmid partitioning protein, RepB; ParB-like partition protein; PFAM: RepB plasmid partition; ParB-like nuclease; KEGG: smd:Smed_4090 ParB-like partition protein; SMART: ParB-like nuclease
YP_005716719.1	KEGG: smd:Smed_4091 replication initiation protein RepC; manually curated; PFAM: Replication protein C
YP_005716720.1	KEGG: smd:Smed_4092 hypothetical protein
YP_005716721.1	PFAM: Protein of unknown function DUF1612; Uncharacterised protein family HTH DNA binding domain; KEGG: smd:Smed_4093 hypothetical protein
YP_005716722.1	KEGG: smd:Smed_4094 hypothetical protein
YP_005716723.1	PFAM: Drug/metabolite transporter; KEGG: smd:Smed_4095 hypothetical protein
YP_005716724.1	KEGG: smd:Smed_4096 GntR family transcriptional regulator; PFAM: Aminotransferase, class I/classII; HTH transcriptional regulator, GntR; SMART: HTH transcriptional regulator, GntR
YP_005716725.1	KEGG: rhi:NGR_b00200 shikimate 5-dehydrogenase; PFAM: Shikimate dehydrogenase substrate binding, N-terminal
YP_005716726.1	KEGG: rhi:NGR_b00210 extracytoplasmic solute receptor of TRAP-transport system; TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: Extracellular solute-binding protein, family 7, bacteria
YP_005716727.1	KEGG: rhi:NGR_b00220 large transmembrane subunit, TRAP-transport system; TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit
YP_005716728.1	PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: rhi:NGR_b00230 small transmembrane subunit, TRAP-transport system
YP_005716729.1	PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: rhi:NGR_b00240 transcriptional regulator, TetR/ArcR family
YP_005716730.1	KEGG: smd:Smed_4097 hypothetical protein
YP_005716731.1	KEGG: smd:Smed_4098 RNA polymerase sigma factor SigJ; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2
YP_005716732.1	KEGG: smd:Smed_4099 alkylhydroperoxidase; TIGRFAM: Alkylhydroperoxidase AhpD core; PFAM: Carboxymuconolactone decarboxylase
YP_005716733.1	KEGG: bid:Bind_3527 prevent-host-death family protein; TIGRFAM: Prevent-host-death protein; PFAM: Prevent-host-death protein
YP_005716734.1	KEGG: smd:Smed_3872 peptidase C45 acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase; manually curated; PFAM: Peptidase C45, acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase
YP_005716735.1	PFAM: Protein of unknown function DUF112, transmembrane; KEGG: smd:Smed_4102 hypothetical protein
YP_005716736.1	KEGG: smd:Smed_4103 hypothetical protein
YP_005716737.1	KEGG: smd:Smed_4104 hypothetical protein
YP_005716738.1	TIGRFAM: Pseudouridine synthase, RsuA/RluB/E/F; PFAM: Pseudouridine synthase, RsuA and RluB/C/D/E/F; RNA-binding S4; KEGG: smd:Smed_4105 pseudouridine synthase; SMART: RNA-binding S4
YP_005716739.1	KEGG: smd:Smed_4106 5-oxoprolinase (ATP-hydrolyzing); PFAM: Hydantoinase B/oxoprolinase; Hydantoinaseoxoprolinase, N-terminal; Hydantoinase/oxoprolinase
YP_005716740.1	PFAM: Dienelactone hydrolase; KEGG: smd:Smed_4107 dienelactone hydrolase
YP_005716741.1	KEGG: smd:Smed_4109 AsnC family transcriptional regulator; PFAM: Transcription regulator AsnC-type, C-terminal; SMART: Transcription regulator AsnC-type
YP_005716742.1	KEGG: smd:Smed_4110 transketolase domain-containing protein; PFAM: Transketolase-like, pyrimidine-binding domain; Transketolase, C-terminal; Dehydrogenase, E1 component; SMART: Transketolase-like, pyrimidine-binding domain
YP_005716743.1	KEGG: smd:Smed_4111 dihydrolipoyllysine-residue succinyltransferase; PFAM: 2-oxoacid dehydrogenase acyltransferase, catalytic domain; Biotin/lipoyl attachment; E3 binding
YP_005716744.1	KEGG: smd:Smed_4112 putative sugar ABC transporter periplasmic sugar-binding protein ABC transporter
YP_005716745.1	PFAM: ABC transporter-like; KEGG: smd:Smed_4113 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_005716746.1	PFAM: ABC transporter permease; KEGG: smd:Smed_4114 monosaccharide-transporting ATPase
YP_005716747.1	PFAM: ABC transporter permease; KEGG: smd:Smed_4115 monosaccharide-transporting ATPase
YP_005716748.1	KEGG: smd:Smed_4116 alanine racemase; PFAM: Periplasmic binding protein/LacI transcriptional regulator; HTH transcriptional regulator, LacI; SMART: HTH transcriptional regulator, LacI
YP_005716749.1	KEGG: smd:Smed_4117 oxidoreductase domain-containing protein; PFAM: Oxidoreductase, N-terminal; SMART: Fibronectin, type III
YP_005716750.1	PFAM: Vitamin K epoxide reductase; NAD-dependent epimerase/dehydratase; SPW repeat; KEGG: smd:Smed_4120 vitamin K epoxide reductase
YP_005716751.1	PFAM: Zinc/iron permease; KEGG: smd:Smed_4121 zinc/iron permease
YP_005716752.1	PFAM: Alpha/beta hydrolase fold-1; KEGG: rpc:RPC_2739 alpha/beta hydrolase fold
YP_005716753.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: bgl:bglu_2g19070 transcriptional regulator, LysR family protein
YP_005716754.1	PFAM: DNA ligase, ATP-dependent, central; DNA ligase, ATP-dependent, C-terminal; KEGG: smd:Smed_4122 ATP-dependent DNA ligase
YP_005716755.1	KEGG: smd:Smed_4123 catalase; PFAM: Catalase-related subgroup; Catalase-related immune responsive
YP_005716756.1	PFAM: Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain; KEGG: smd:Smed_4124 pyridoxamine 5'-phosphate oxidase-related FMN-binding
YP_005716757.1	PFAM: Glutathione S-transferase, N-terminal; Glutathione S-transferase, C-terminal; KEGG: smd:Smed_4125 glutathione S-transferase domain-containing protein
YP_005716758.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: smd:Smed_4126 LysR family transcriptional regulator
YP_005716759.1	PFAM: NADP oxidoreductase, coenzyme F420-dependent; KEGG: smd:Smed_4127 pyrroline-5-carboxylate reductase
YP_005716760.1	PFAM: ABC transporter-like; Transport-associated OB, type 2; KEGG: smd:Smed_4132 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_005716761.1	KEGG: smd:Smed_4133 glycoside hydrolase family protein; PFAM: Glycoside hydrolase, family 2, TIM barrel; Glycoside hydrolase, family 2, carbohydrate-binding; Glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich
YP_005716762.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_4134 binding-protein-dependent transport systems inner membrane component
YP_005716763.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_4135 binding-protein-dependent transport systems inner membrane component
YP_005716764.1	PFAM: Bacterial extracellular solute-binding, family 1; KEGG: smd:Smed_4136 extracellular solute-binding protein
YP_005716765.1	KEGG: rhi:NGR_b00300 putative plasmid stability protein
YP_005716766.1	PFAM: PilT protein, N-terminal; KEGG: nha:Nham_4575 PilT protein-like
YP_005716767.1	PFAM: Periplasmic binding protein/LacI transcriptional regulator; HTH transcriptional regulator, LacI; KEGG: smd:Smed_4137 regulatory protein LacI
YP_005716768.1	KEGG: smd:Smed_4138 AraC family transcriptional regulator; PFAM: HTH transcriptional regulator, AraC, arabinose-binding/dimerisation; HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain
YP_005716769.1	KEGG: smd:Smed_4139 glycoside hydrolase family protein; PFAM: Glycoside hydrolase, family 4
YP_005716770.1	PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: smd:Smed_4140 extracellular solute-binding protein
YP_005716771.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_4141 binding-protein-dependent transport systems inner membrane component
YP_005716772.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_4142 binding-protein-dependent transport systems inner membrane component
YP_005716773.1	PFAM: ABC transporter-like; Oligopeptide/dipeptide ABC transporter, C-terminal; KEGG: smd:Smed_4143 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_005716774.1	KEGG: smd:Smed_4144 glycoside hydrolase family protein; PFAM: Glycoside hydrolase, family 4; Glycosyl hydrolase, family 4, C-terminal
YP_005716775.1	PFAM: Protein of unknown function DUF992; KEGG: smd:Smed_4145 hypothetical protein
YP_005716776.1	KEGG: smd:Smed_4146 PaaX family transcriptional regulator; TIGRFAM: Phenylacetic acid degradation operon negative regulatory protein PaaX; PFAM: PaaX-like, C-terminal; PaaX-like, N-terminal
YP_005716777.1	KEGG: smd:Smed_4147 phenylacetate-CoA oxygenase subunit PaaA; TIGRFAM: Phenylacetate-CoA oxygenase, PaaG subunit; PFAM: Phenylacetic acid catabolic
YP_005716778.1	KEGG: rhi:NGR_c26180 phenylacetate-CoA oxygenase subunit PaaB; TIGRFAM: Phenylacetic acid degradation B; PFAM: Phenylacetic acid degradation B
YP_005716779.1	KEGG: smd:Smed_4149 phenylacetate-CoA oxygenase, PaaI subunit; TIGRFAM: Phenylacetate-CoA oxygenase, PaaI subunit; PFAM: Phenylacetic acid catabolic
YP_005716780.1	KEGG: smd:Smed_4150 phenylacetate-CoA oxygenase, PaaJ subunit; TIGRFAM: Phenylacetate-CoA oxygenase, PaaJ subunit; PFAM: Domain of unknown function DUF59
YP_005716781.1	KEGG: smd:Smed_4151 phenylacetate-CoA oxygenase/reductase, PaaK subunit; TIGRFAM: Phenylacetate-CoA oxygenase/reductase, PaaK subunit; PFAM: Ferredoxin; Oxidoreductase FAD/NAD(P)-binding; Oxidoreductase, FAD-binding domain
YP_005716782.1	TIGRFAM: Phenylacetic acid degradation protein PaaN; KEGG: smd:Smed_4152 bifunctional aldehyde dehydrogenase/enoyl-CoA hydratase; PFAM: Aldehyde dehydrogenase domain; MaoC-like dehydratase
YP_005716783.1	PFAM: Thioesterase superfamily; KEGG: smd:Smed_4153 thioesterase superfamily protein
YP_005716784.1	TIGRFAM: Phenylacetate degradation probable enoyl-CoA hydratase PaaB; KEGG: smd:Smed_4154 enoyl-CoA hydratase; PFAM: Crotonase, core
YP_005716785.1	KEGG: smd:Smed_4155 3-hydroxybutyryl-CoA epimerase; PFAM: 3-hydroxyacyl-CoA dehydrogenase, NAD binding; 3-hydroxyacyl-CoA dehydrogenase, C-terminal
YP_005716786.1	KEGG: smd:Smed_4156 carboxynorspermidine decarboxylase; TIGRFAM: Carboxynorspermidine decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2, C-terminal
YP_005716787.1	PFAM: Saccharopine dehydrogenase / Homospermidine synthase; KEGG: smd:Smed_4157 saccharopine dehydrogenase
YP_005716788.1	KEGG: smd:Smed_4158 alanine racemase; PFAM: Periplasmic binding protein/LacI transcriptional regulator; SMART: HTH transcriptional regulator, LacI
YP_005716789.1	PFAM: Bacterial extracellular solute-binding, family 1; KEGG: smd:Smed_4159 extracellular solute-binding protein
YP_005716790.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_4160 binding-protein-dependent transport systems inner membrane component
YP_005716791.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_4161 binding-protein-dependent transport systems inner membrane component
YP_005716792.1	PFAM: Protein of unknown function DUF1680; KEGG: smd:Smed_4162 hypothetical protein
YP_005716793.1	PFAM: ABC transporter-like; Transport-associated OB, type 2; KEGG: smd:Smed_4163 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_005716794.1	PFAM: Rv0623-like transcription factor; KEGG: mes:Meso_4324 Rv0623-like transcription factor
YP_005716795.1	PFAM: CopG-like DNA-binding; KEGG: mea:Mex_2p0928 hypothetical protein
YP_005716796.1	PFAM: Plasmid stabilisation system; KEGG: pde:Pden_0144 plasmid stabilization system protein
YP_005716797.1	KEGG: smd:Smed_4168 helix-turn-helix domain-containing protein; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain
YP_005716798.1	PFAM: Major facilitator superfamily MFS-1; KEGG: smd:Smed_4169 major facilitator transporter
YP_005716799.1	KEGG: rhi:NGR_b02900 thiamine-phosphate pyrophosphorylase; TIGRFAM: Thiamine monophosphate synthase; PFAM: Thiamine monophosphate synthase
YP_005716800.1	PFAM: Thiazole biosynthesis; KEGG: smd:Smed_4171 thiazole synthase
YP_005716801.1	KEGG: smd:Smed_4172 sulfur carrier protein ThiS; TIGRFAM: ThiS, thiamine-biosynthesis; PFAM: ThiamineS
YP_005716802.1	KEGG: smd:Smed_4173 glycine oxidase ThiO; TIGRFAM: Glycine oxidase ThiO; PFAM: FAD dependent oxidoreductase
YP_005716803.1	KEGG: smd:Smed_4174 thiamine biosynthesis protein ThiC; TIGRFAM: Thiamine biosynthesis protein ThiC; PFAM: Thiamine biosynthesis protein ThiC
YP_005716804.1	KEGG: smd:Smed_4175 hypothetical protein
YP_005716805.1	KEGG: smd:Smed_4176 two component, sigma54 specific, fis family transcriptional regulator; PFAM: RNA polymerase sigma factor 54, interaction; Signal transduction response regulator, receiver domain; Helix-turn-helix, Fis-type; SMART: Signal transduction response regulator, receiver domain; ATPase, AAA+ type, core
YP_005716806.1	KEGG: smd:Smed_4177 histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain
YP_005716807.1	KEGG: smd:Smed_4178 C4-dicarboxylate transporter DctA; HAMAP: C4-dicarboxylate transport protein; PFAM: Sodium:dicarboxylate symporter
YP_005716808.1	KEGG: smd:Smed_4179 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal; SMART: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal
YP_005716809.1	KEGG: smd:Smed_4180 integral membrane sensor hybrid histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction response regulator, receiver domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; Signal transduction response regulator, receiver domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain
YP_005716810.1	KEGG: smd:Smed_5691 sterile alpha motif-containing protein; PFAM: Adenylyl cyclase class-3/4/guanylyl cyclase; Sterile alpha motif, type 1; SMART: Adenylyl cyclase class-3/4/guanylyl cyclase; Sterile alpha motif domain
YP_005716811.1	KEGG: smd:Smed_5690 hypothetical protein
YP_005716812.1	KEGG: smd:Smed_5689 hypothetical protein
YP_005716813.1	KEGG: smd:Smed_4181 regulatory protein ArsR; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR
YP_005716814.1	PFAM: Activator of Hsp90 ATPase homologue 1-like; KEGG: smd:Smed_4182 activator of HSP90 ATPase 1 family protein
YP_005716815.1	PFAM: Glutathione-dependent formaldehyde-activating, GFA; KEGG: smd:Smed_4183 glutathione-dependent formaldehyde-activating GFA
YP_005716816.1	TIGRFAM: ABC transporter, urea, substrate-binding, UrtA; KEGG: rhi:NGR_b21780 ABC transporter, substrate binding protein
YP_005716817.1	KEGG: smd:Smed_4185 inner-membrane translocator; TIGRFAM: ABC transporter, urea, permease protein, UrtB; PFAM: ABC transporter permease
YP_005716818.1	KEGG: rhi:NGR_b21760 probable UreA or short-chain amide ABC transporter, permease protein; TIGRFAM: ABC transporter, urea, permease protein, UrtC; PFAM: ABC transporter permease
YP_005716819.1	SMART: ATPase, AAA+ type, core; TIGRFAM: ABC transporter, urea, ATP-binding protein, UrtD; KEGG: smd:Smed_4187 ABC transporter related; PFAM: ABC transporter-like
YP_005716820.1	SMART: ATPase, AAA+ type, core; TIGRFAM: ABC transporter, urea, ATP-binding protein, UrtE; KEGG: smd:Smed_4188 ABC transporter related; PFAM: ABC transporter-like
YP_005716821.1	KEGG: smd:Smed_4189 hypothetical protein
YP_005716822.1	TIGRFAM: Plasmid partitioning protein, RepB; ParB-like partition protein; PFAM: RepB plasmid partition; ParB-like nuclease; KEGG: rhi:NGR_b21660 RepB2 replication protein; SMART: ParB-like nuclease
YP_005716823.1	KEGG: smd:Smed_4191 cobyrinic acid ac-diamide synthase; TIGRFAM: Plasmid partitioning protein, RepA; PFAM: Cobyrinic acid a,c-diamide synthase; HTH transcriptional regulator, MerR
YP_005716824.1	PFAM: Uncharacterised protein family YphA; KEGG: rhi:NGR_b21610 DoxX family protein
YP_005716825.1	KEGG: smd:Smed_4194 cell divisionFtsK/SpoIIIE; PFAM: Cell divisionFtsK/SpoIIIE; DNA translocase FtsK gamma; SMART: DNA translocase FtsK gamma; ATPase, AAA+ type, core
YP_005716826.1	PFAM: Blue (type 1) copper domain; KEGG: smd:Smed_4195 blue (type1) copper domain-containing protein
YP_005716827.1	KEGG: smd:Smed_4196 hypothetical protein
YP_005716828.1	KEGG: smd:Smed_4197 RNA polymerase sigma factor; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2
YP_005716829.1	PFAM: Acylphosphatase-like; KEGG: smd:Smed_4198 acylphosphatase
YP_005716830.1	TIGRFAM: Beta-ketoadipyl CoA thiolase; Thiolase; KEGG: rhi:NGR_b21430 beta-ketoadipyl CoA thiolase; PFAM: Thiolase, N-terminal; Thiolase, C-terminal
YP_005716831.1	PFAM: Coenzyme A transferase; KEGG: rhi:NGR_b21420 probable CoA transferase, subunit B; SMART: Coenzyme A transferase
YP_005716832.1	PFAM: Coenzyme A transferase; KEGG: rhi:NGR_b21410 probable CoA transferase, subunit A; SMART: Coenzyme A transferase
YP_005716833.1	TIGRFAM: Beta-ketoadipate transcriptional regulator, PcaR/PcaU/PobR; PFAM: Transcription regulator IclR, C-terminal; Transcription regulator IclR, N-terminal; KEGG: rhi:NGR_b21400 putative transcriptional regulator PcaR, IclR family; SMART: Transcription regulator IclR, N-terminal
YP_005716834.1	TIGRFAM: Gamma-glutamyltranspeptidase; KEGG: smd:Smed_4199 gamma-glutamyltransferase; PFAM: Gamma-glutamyltranspeptidase
YP_005716835.1	PFAM: Oxidoreductase, molybdopterin-binding domain; KEGG: smd:Smed_4200 oxidoreductase molybdopterin binding
YP_005716836.1	TIGRFAM: 4-hydroxybenzoate 3-monooxygenase; KEGG: rhi:NGR_b12590 4-hydroxybenzoate 3-monooxygenase; PFAM: Monooxygenase, FAD-binding
YP_005716837.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: smd:Smed_4203 LysR family transcriptional regulator
YP_005716838.1	KEGG: smd:Smed_4204 xylose isomerase domain-containing protein; PFAM: Xylose isomerase, TIM barrel domain; Glyoxalase/bleomycin resistance protein/dioxygenase
YP_005716839.1	KEGG: smd:Smed_4205 LysR family transcriptional regulator; TIGRFAM: Pca transcription factor PcaQ; PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR
YP_005716840.1	TIGRFAM: 3-oxoadipate enol-lactonase; KEGG: smd:Smed_4206 3-oxoadipate enol-lactonase; PFAM: Alpha/beta hydrolase fold-1
YP_005716841.1	KEGG: smd:Smed_4207 4-carboxymuconolactone decarboxylase; TIGRFAM: 4-carboxymuconolactone decarboxylase; PFAM: Carboxymuconolactone decarboxylase
YP_005716842.1	TIGRFAM: Protocatechuate 3,4-dioxygenase, beta subunit; KEGG: smd:Smed_4208 protocatechuate 3,4-dioxygenase, beta subunit; PFAM: Intradiol ring-cleavage dioxygenase, C-terminal
YP_005716843.1	TIGRFAM: Protocatechuate 3,4-dioxygenase, alpha subunit; KEGG: smd:Smed_4209 protocatechuate 3,4-dioxygenase, alpha subunit; PFAM: Intradiol ring-cleavage dioxygenase, C-terminal
YP_005716844.1	TIGRFAM: 3-carboxy-cis,cis-muconate cycloisomerase; KEGG: smd:Smed_4210 3-carboxy-cis,cis-muconate cycloisomerase; PFAM: Lyase 1, N-terminal
YP_005716845.1	TIGRFAM: Malto-oligosyltrehalose synthase; KEGG: smd:Smed_4211 maltooligosyl trehalose synthase; PFAM: Glycosyl hydrolase, family 13, catalytic domain
YP_005716846.1	KEGG: smd:Smed_4212 NADPH-dependent FMN reductase; TIGRFAM: FMN reductase, MsuE-like; PFAM: NADPH-dependent FMN reductase
YP_005716847.1	TIGRFAM: Nitrilotriacetate monooxygenase component A/pristinamycin IIA synthase subunit A; KEGG: smd:Smed_4213 putative nitrilotriacetate monooxygenase component A protein
YP_005716848.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_4214 binding-protein-dependent transport systems inner membrane component
YP_005716849.1	KEGG: smd:Smed_4215 NMT1/THI5-like domain-containing protein
YP_005716850.1	PFAM: ABC transporter-like; KEGG: smd:Smed_4216 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_005716851.1	PFAM: Extracellular ligand-binding receptor; KEGG: smd:Smed_4217 extracellular ligand-binding receptor
YP_005716852.1	PFAM: ABC transporter permease; KEGG: smd:Smed_4218 inner-membrane translocator
YP_005716853.1	PFAM: ABC transporter permease; KEGG: smd:Smed_4219 inner-membrane translocator
YP_005716854.1	PFAM: ABC transporter-like; KEGG: smd:Smed_4220 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_005716855.1	PFAM: ABC transporter-like; KEGG: smd:Smed_4221 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_005716856.1	KEGG: smd:Smed_0057 putative CHASE2 sensor protein; PFAM: CHASE2; Adenylyl cyclase class-3/4/guanylyl cyclase; SMART: Adenylyl cyclase class-3/4/guanylyl cyclase
YP_005716857.1	KEGG: smd:Smed_0058 TonB-dependent receptor; PFAM: FecR protein; SMART: Tetratricopeptide repeat
YP_005716858.1	KEGG: smd:Smed_0059 hypothetical protein
YP_005716859.1	KEGG: smd:Smed_4222 GntR family transcriptional regulator; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: HTH transcriptional regulator, GntR; GntR, C-terminal
YP_005716860.1	HAMAP: Pyridoxal phosphate (active vitamin B6) biosynthesis PdxA; KEGG: smd:Smed_4223 4-hydroxythreonine-4-phosphate dehydrogenase; PFAM: Pyridoxal phosphate (active vitamin B6) biosynthesis PdxA
YP_005716861.1	KEGG: smd:Smed_4224 hypothetical protein
YP_005716862.1	KEGG: smd:Smed_4225 hypothetical protein
YP_005716863.1	PFAM: Protein of unknown function DUF112, transmembrane; KEGG: smd:Smed_4226 hypothetical protein
YP_005716864.1	PFAM: Xylose isomerase, TIM barrel domain; KEGG: smd:Smed_4227 xylose isomerase domain-containing protein
YP_005716865.1	KEGG: smd:Smed_4228 dihydroxyacetone kinase; PFAM: Dak kinase; Dak phosphatase
YP_005716866.1	TIGRFAM: Phosphonate metabolim protein, transferase hexapeptide repeat family; KEGG: smd:Smed_4229 hexapaptide repeat-containing transferase
YP_005716867.1	SMART: ATPase, AAA+ type, core; TIGRFAM: Phosphonate C-P lyase system, PhnL; KEGG: smd:Smed_4230 phosphonate C-P lyase system protein PhnL; PFAM: ABC transporter-like
YP_005716868.1	SMART: ATPase, AAA+ type, core; TIGRFAM: Phosphonate C-P lyase system, PhnK; KEGG: smd:Smed_4231 phosphonate C-P lyase system protein PhnK; PFAM: ABC transporter-like; Oligopeptide/dipeptide ABC transporter, C-terminal
YP_005716869.1	PFAM: Phosphonate metabolism PhnJ; KEGG: smd:Smed_4232 phosphonate metabolism PhnJ
YP_005716870.1	PFAM: Phosphonate metabolism; KEGG: smd:Smed_4233 phosphonate metabolism
YP_005716871.1	KEGG: smd:Smed_4234 carbon-phosphorus lyase complex subunit; TIGRFAM: Bacterial phosphonate metabolism; PFAM: Bacterial phosphonate metabolism
YP_005716872.1	KEGG: smd:Smed_4235 phosphonate metabolism PhnG; TIGRFAM: Phosphonate metabolism PhnG; PFAM: Phosphonate metabolism PhnG
YP_005716873.1	TIGRFAM: Phosphonate C-P lyase system, transcriptional regulator PhnF; PFAM: UbiC transcription regulator-associated; HTH transcriptional regulator, GntR; KEGG: smd:Smed_4236 GntR family transcriptional regulator; SMART: UbiC transcription regulator-associated; HTH transcriptional regulator, GntR
YP_005716874.1	TIGRFAM: Methylmalonyl-CoA mutase, alpha chain, catalytic; Methylmalonyl-CoA mutase, C-terminal; KEGG: smd:Smed_4237 methylmalonyl-CoA mutase; PFAM: Methylmalonyl-CoA mutase, alpha/beta chain, catalytic; Cobalamin (vitamin B12)-binding
YP_005716875.1	PFAM: Carbamoyl-phosphate synthetase, large subunit, ATP-binding; Biotin carboxylase, C-terminal; Carbamoyl-phosphate synthase, large subunit, N-terminal; Biotin/lipoyl attachment; KEGG: smd:Smed_4238 carbamoyl-phosphate synthase L chain ATP-binding; SMART: Biotin carboxylase, C-terminal
YP_005716876.1	KEGG: smd:Smed_4239 carboxyl transferase; PFAM: Carboxyl transferase
YP_005716877.1	KEGG: smd:Smed_4240 hypothetical protein; PFAM: Protein of unknown function DUF2083,transcriptional regulator; Protein of unknown function DUF955; Helix-turn-helix type 3; SMART: Helix-turn-helix type 3
YP_005716878.1	KEGG: smd:Smed_4241 acyl-CoA dehydrogenase domain-containing protein; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, central domain
YP_005716879.1	KEGG: smd:Smed_4242 3-hydroxyisobutyryl-CoA hydrolase; PFAM: Crotonase, core
YP_005716880.1	TIGRFAM: 3-hydroxyisobutyrate dehydrogenase; KEGG: smd:Smed_4243 3-hydroxyisobutyrate dehydrogenase; PFAM: 6-phosphogluconate dehydrogenase, NAD-binding
YP_005716881.1	KEGG: smd:Smed_4244 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR
YP_005716882.1	KEGG: smd:Smed_4245 mannitol dehydrogenase domain-containing protein; PFAM: Mannitol dehydrogenase, C-terminal; Mannitol dehydrogenase, N-terminal
YP_005716883.1	PFAM: Glycosyl transferase, family 2; KEGG: smd:Smed_4246 glycosyl transferase family protein
YP_005716884.1	KEGG: smd:Smed_4249 HAD family hydrolase; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase-like hydrolase
YP_005716885.1	KEGG: smd:Smed_4250 hypothetical protein
YP_005716886.1	KEGG: smd:Smed_4251 glutamate--ammonia ligase; PFAM: Glutamine synthetase, catalytic domain; Glutamine synthetase, beta-Grasp
YP_005716887.1	KEGG: smd:Smed_4254 hypothetical protein
YP_005716888.1	PFAM: Protein of unknown function DUF112, transmembrane; KEGG: smd:Smed_4255 hypothetical protein
YP_005716889.1	KEGG: smd:Smed_4256 putative tricarboxylic transport membrane protein
YP_005716890.1	KEGG: rhi:NGR_b20620 TRAP-T family transporter, periplasmic binding protein
YP_005716891.1	PFAM: Bacterial extracellular solute-binding, family 1; KEGG: smd:Smed_4258 putative iron ABC transporter periplasmic solute-binding protein precursor
YP_005716892.1	KEGG: smd:Smed_4259 two component transcriptional regulator; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal
YP_005716893.1	KEGG: smd:Smed_4260 integral membrane sensor signal transduction histidine kinase; PFAM: Two-component sensor kinase N-terminal; ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain
YP_005716894.1	KEGG: smd:Smed_4261 putative sugar uptake ABC transporter periplasmic solute-binding protein precursor
YP_005716895.1	PFAM: ABC transporter permease; KEGG: smd:Smed_4262 monosaccharide-transporting ATPase
YP_005716896.1	PFAM: ABC transporter-like; KEGG: smd:Smed_4263 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_005716897.1	KEGG: smd:Smed_4264 alanine racemase; PFAM: Periplasmic binding protein/LacI transcriptional regulator; HTH transcriptional regulator, LacI; SMART: HTH transcriptional regulator, LacI
YP_005716898.1	PFAM: Drug/metabolite transporter; KEGG: smd:Smed_2431 hypothetical protein
YP_005716899.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: smd:Smed_2432 LysR family transcriptional regulator
YP_005716900.1	KEGG: smd:Smed_4265 hypothetical protein
YP_005716901.1	PFAM: ABC transporter permease; KEGG: smd:Smed_4266 monosaccharide-transporting ATPase
YP_005716902.1	PFAM: ABC transporter-like; KEGG: smd:Smed_4267 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_005716903.1	PFAM: Periplasmic binding protein/LacI transcriptional regulator; KEGG: smd:Smed_4268 periplasmic binding protein/LacI transcriptional regulator
YP_005716904.1	PFAM: Xylose isomerase, TIM barrel domain; KEGG: smd:Smed_4269 xylose isomerase domain-containing protein
YP_005716905.1	KEGG: smd:Smed_4270 3-hydroxyisobutyrate dehydrogenase; PFAM: 6-phosphogluconate dehydrogenase, NAD-binding
YP_005716906.1	TIGRFAM: Methylpurine-DNA glycosylase (MPG); HAMAP: Methylpurine-DNA glycosylase (MPG); KEGG: smd:Smed_4271 3-methyladenine DNA glycosylase; PFAM: Methylpurine-DNA glycosylase (MPG)
YP_005716907.1	KEGG: smd:Smed_4272 methylated-DNA--protein-cysteine methyltransferase; TIGRFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding; PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding
YP_005716908.1	KEGG: smd:Smed_4273 putative adenylate/guanylate cyclase; PFAM: Adenylyl cyclase class-3/4/guanylyl cyclase; SMART: Adenylyl cyclase class-3/4/guanylyl cyclase
YP_005716909.1	KEGG: smd:Smed_4274 extracellular solute-binding protein; PFAM: Extracellular solute-binding protein, family 3; SMART: Extracellular solute-binding protein, family 3
YP_005716910.1	PFAM: Drug/metabolite transporter; KEGG: smd:Smed_4275 hypothetical protein
YP_005716911.1	TIGRFAM: Glycogen/starch synthases, ADP-glucose type; KEGG: smd:Smed_4276 glycogen synthase; PFAM: Starch synthase, catalytic domain; Glycosyl transferase, group 1
YP_005716912.1	KEGG: smd:Smed_4277 PEBP family protein; TIGRFAM: YbhB/YbcL; PFAM: Phosphatidylethanolamine-binding protein PEBP
YP_005716913.1	SMART: Signal transduction response regulator, C-terminal; manually curated; KEGG: smd:Smed_4280 transcriptional regulator domain-containing protein; PFAM: Signal transduction response regulator, C-terminal
YP_005716914.1	PFAM: NAD-dependent epimerase/dehydratase; KEGG: smd:Smed_4281 NmrA family protein
YP_005716915.1	PFAM: Cupin 2, conserved barrel; KEGG: smd:Smed_4282 cupin 2 domain-containing protein
YP_005716916.1	PFAM: Secretion protein HlyD; KEGG: smd:Smed_4283 secretion protein HlyD family protein
YP_005716917.1	KEGG: smd:Smed_4284 major facilitator transporter; TIGRFAM: Drug resistance transporter EmrB/QacA subfamily; PFAM: Major facilitator superfamily MFS-1
YP_005716918.1	PFAM: Peptidase M20; KEGG: smd:Smed_4285 peptidase M20
YP_005716919.1	TIGRFAM: Conserved hypothetical protein CHP02293; KEGG: rlg:Rleg_5272 hypothetical protein
YP_005716920.1	KEGG: vap:Vapar_3338 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR
YP_005716921.1	TIGRFAM: Exodeoxyribonuclease III xth; AP endonuclease, family 1; KEGG: smd:Smed_4299 exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase
YP_005716922.1	KEGG: smd:Smed_4300 hypothetical protein
YP_005716923.1	KEGG: smd:Smed_4301 TPR repeat-containing protein; PFAM: Tetratricopeptide TPR-1; Tetratricopeptide TPR-4; SMART: Tetratricopeptide repeat
YP_005716924.1	SMART: DNA helicase, ATP-dependent, Ku type; TIGRFAM: Ku, prokaryotic type; KEGG: smd:Smed_4302 Ku family containing protein; HAMAP: Ku, prokaryotic type; PFAM: DNA helicase, ATP-dependent, Ku type
YP_005716925.1	KEGG: smd:Smed_4303 DNA ligase D; TIGRFAM: DNA polymerase LigD, polymerase domain; DNA ligase D; DNA polymerase LigD, ligase domain; DNA ligase D, 3'-phosphoesterase domain; PFAM: DNA ligase, ATP-dependent, central; DNA ligase, ATP-dependent, C-terminal; DNA primase, small subunit
YP_005716926.1	KEGG: smd:Smed_4304 hypothetical protein; TIGRFAM: Conserved hypothetical protein CHP03214, putative allantoin-urate catabolism protein; PFAM: Cupin 2, conserved barrel
YP_005716927.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: smd:Smed_4305 LysR family transcriptional regulator
YP_005716928.1	KEGG: smd:Smed_4307 transcriptional regulator IclR; PFAM: Transcription regulator IclR, C-terminal; Transcription regulator IclR, N-terminal; SMART: Transcription regulator IclR, N-terminal
YP_005716929.1	TIGRFAM: Glyoxylate carboligase; KEGG: smd:Smed_4308 glyoxylate carboligase; PFAM: Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain; Thiamine pyrophosphate enzyme, C-terminal TPP-binding; Thiamine pyrophosphate enzyme, central domain
YP_005716930.1	TIGRFAM: Hydroxypyruvate isomerase; KEGG: smd:Smed_4309 hydroxypyruvate isomerase; PFAM: Xylose isomerase, TIM barrel domain
YP_005716931.1	TIGRFAM: 2-hydroxy-3-oxopropionate reductase; KEGG: smd:Smed_4310 2-hydroxy-3-oxopropionate reductase; PFAM: 6-phosphogluconate dehydrogenase, NAD-binding
YP_005716932.1	KEGG: smd:Smed_4311 hydroxypyruvate reductase; PFAM: MOFRL domain
YP_005716933.1	HAMAP: Ureidoglycolate hydrolase; KEGG: smd:Smed_4312 ureidoglycolate hydrolase; PFAM: Ureidoglycolate hydrolase
YP_005716934.1	PFAM: Protein of unknown function DUF930; KEGG: smd:Smed_4313 hypothetical protein
YP_005716935.1	PFAM: Protein of unknown function DUF1349; KEGG: smd:Smed_4314 hypothetical protein
YP_005716936.1	KEGG: smd:Smed_4315 periplasmic binding protein/LacI transcriptional regulator; PFAM: Periplasmic binding protein/LacI transcriptional regulator; HTH transcriptional regulator, LacI; SMART: HTH transcriptional regulator, LacI
YP_005716937.1	PFAM: ABC transporter-like; KEGG: smd:Smed_4316 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_005716938.1	PFAM: ABC transporter permease; Photosystem II PsbL; KEGG: smd:Smed_4317 monosaccharide-transporting ATPase
YP_005716939.1	KEGG: smd:Smed_4318 periplasmic binding protein/LacI transcriptional regulator
YP_005716940.1	PFAM: Protein of unknown function, DUF1537; KEGG: smd:Smed_4319 type III effector Hrp-dependent outers
YP_005716941.1	KEGG: smd:Smed_4320 hydroxypyruvate isomerase; PFAM: Xylose isomerase, TIM barrel domain
YP_005716942.1	KEGG: smd:Smed_4321 3-hydroxyisobutyrate dehydrogenase; PFAM: 6-phosphogluconate dehydrogenase, NAD-binding
YP_005716943.1	KEGG: smd:Smed_4322 regulatory protein LacI; PFAM: HTH transcriptional regulator, LacI; Periplasmic binding protein/LacI transcriptional regulator; SMART: HTH transcriptional regulator, LacI
YP_005716944.1	PFAM: Class II aldolase/adducin, N-terminal; KEGG: smd:Smed_4323 putative aldolase
YP_005716945.1	KEGG: smd:Smed_4324 GntR domain-containing protein; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: GntR, C-terminal; HTH transcriptional regulator, GntR
YP_005716946.1	PFAM: NAD-dependent epimerase/dehydratase; KEGG: smd:Smed_4325 NAD-dependent epimerase/dehydratase
YP_005716947.1	KEGG: smd:Smed_4326 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR
YP_005716948.1	PFAM: ABC transporter-like; Transport-associated OB, type 1; KEGG: smd:Smed_4327 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_005716949.1	PFAM: Bacterial extracellular solute-binding, family 1; KEGG: smd:Smed_4328 extracellular solute-binding protein
YP_005716950.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_4329 binding-protein-dependent transport systems inner membrane component
YP_005716951.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_4330 binding-protein-dependent transport systems inner membrane component
YP_005716952.1	KEGG: smd:Smed_4331 hypothetical protein
YP_005716953.1	PFAM: NADP-dependent oxidoreductase domain; KEGG: smd:Smed_4332 aldo/keto reductase
YP_005716954.1	KEGG: rhi:NGR_b20200 3-demethylubiquinone-9 3-methyltransferase
YP_005716955.1	manually curated; KEGG: smd:Smed_4333 hypothetical protein
YP_005716956.1	KEGG: rhi:NGR_b19220 hypothetical protein
YP_005716957.1	TIGRFAM: Asparagine synthase, glutamine-hydrolyzing; KEGG: smd:Smed_4334 asparagine synthase (glutamine-hydrolyzing); PFAM: Asparagine synthase; Glutamine amidotransferase, class-II
YP_005716958.1	KEGG: smd:Smed_4335 hypothetical protein
YP_005716959.1	KEGG: smd:Smed_4336 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase
YP_005716960.1	PFAM: NAD/GMP synthase; TIGRFAM: NAD synthase; HAMAP: NH(3)-dependent NAD(+) synthetase; KEGG: smd:Smed_4337 NAD synthetase
YP_005716961.1	KEGG: smd:Smed_4338 hypothetical protein
YP_005716962.1	PFAM: NADP-dependent oxidoreductase domain; KEGG: rhi:NGR_c27500 putative oxidoreductase protein
YP_005716963.1	KEGG: smd:Smed_4339 hypothetical protein
YP_005716964.1	KEGG: smd:Smed_4340 septum formation inhibitor; TIGRFAM: Septum formation inhibitor MinC; PFAM: Septum formation inhibitor MinC, C-terminal
YP_005716965.1	KEGG: smd:Smed_4341 septum site-determining protein MinD; TIGRFAM: Septum site-determining protein MinD; PFAM: Cobyrinic acid a,c-diamide synthase
YP_005716966.1	TIGRFAM: Septum formation topological specificity factor MinE; HAMAP: Septum formation topological specificity factor MinE; KEGG: smd:Smed_4342 cell division topological specificity factor MinE; PFAM: Septum formation topological specificity factor MinE
YP_005716967.1	KEGG: smd:Smed_4343 exported protein, glycine-rich
YP_005716968.1	KEGG: smd:Smed_4344 two component LuxR family transcriptional regulator; PFAM: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal; SMART: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal
YP_005716969.1	KEGG: smd:Smed_4345 putative signal transduction histidine kinase; PFAM: ATPase-like, ATP-binding domain; SMART: ATPase-like, ATP-binding domain
YP_005716970.1	KEGG: smd:Smed_4346 hypothetical protein
YP_005716971.1	KEGG: smd:Smed_4347 diguanylate phosphodiesterase; PFAM: Diguanylate phosphodiesterase, EAL domain; SMART: Diguanylate phosphodiesterase, EAL domain
YP_005716972.1	KEGG: smd:Smed_4348 ErfK/YbiS/YcfS/YnhG family protein; manually curated; PFAM: YkuD domain
YP_005716973.1	KEGG: smd:Smed_4349 hypothetical protein
YP_005716974.1	manually curated; TIGRFAM: Modification methylase HemK; KEGG: smd:Smed_4350 HemK family modification methylase; PFAM: Methyltransferase small
YP_005716975.1	PFAM: Polysaccharide biosynthesis protein; KEGG: smd:Smed_4351 polysaccharide biosynthesis protein
YP_005716976.1	KEGG: smd:Smed_4352 hypothetical protein
YP_005716977.1	KEGG: rhi:NGR_b00160 dihydrodipicolinate synthetase; PFAM: Dihydrodipicolinate synthetase
YP_005716978.1	PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: cak:Caul_3539 lysine exporter protein LysE/YggA
YP_005716979.1	PFAM: Lipopolysaccharide biosynthesis; KEGG: smd:Smed_4353 lipopolysaccharide biosynthesis protein
YP_005716980.1	PFAM: O-antigen ligase-related; KEGG: smd:Smed_4354 O-antigen polymerase
YP_005716981.1	PFAM: Polysaccharide deacetylase; KEGG: smd:Smed_4355 polysaccharide deacetylase
YP_005716982.1	PFAM: Glycosyl transferase, group 1; KEGG: smd:Smed_4356 glycosyl transferase group 1
YP_005716983.1	PFAM: Glycosyl transferase, group 1; Domain of unknown function DUF1972; KEGG: smd:Smed_4357 glycosyl transferase group 1
YP_005716984.1	KEGG: smd:Smed_4358 hypothetical protein
YP_005716985.1	PFAM: Glycosyl transferase, family 2; KEGG: smd:Smed_4359 glycosyl transferase family protein
YP_005716986.1	PFAM: Glycoside hydrolase, family 5; KEGG: smd:Smed_4360 hypothetical protein
YP_005716987.1	KEGG: smd:Smed_4361 hydrophobe/amphiphile efflux-1 (HAE1) family protein; TIGRFAM: Hydrophobe/amphiphile efflux-1 HAE1; PFAM: Acriflavin resistance protein
YP_005716988.1	KEGG: smd:Smed_4362 RND family efflux transporter MFP subunit; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD
YP_005716989.1	KEGG: rhi:NGR_b18900 hypothetical protein
YP_005716990.1	KEGG: rhi:NGR_b18880 ornithine cyclodeaminase; PFAM: Ornithine cyclodeaminase/mu-crystallin
YP_005716991.1	KEGG: smd:Smed_4365 AsnC family transcriptional regulator; PFAM: Transcription regulator AsnC-type, C-terminal; SMART: Transcription regulator AsnC-type
YP_005716992.1	PFAM: Protein of unknown function DUF922; KEGG: smd:Smed_4366 hypothetical protein
YP_005716993.1	PFAM: Protein of unknown function DUF992; KEGG: smd:Smed_4367 hypothetical protein
YP_005716994.1	PFAM: Surfeit locus 1; KEGG: smd:Smed_4368 surfeit locus 1 family protein
YP_005716995.1	KEGG: smd:Smed_4369 cytochrome o ubiquinol oxidase subunit IV; TIGRFAM: Cytochrome o ubiquinol oxidase subunit IV; PFAM: Cytochrome C oxidase subunit IV prokaryotic
YP_005716996.1	KEGG: rhi:NGR_b18820 cytochrome o ubiquinol oxidase subunit III; TIGRFAM: Cytochrome o ubiquinol oxidase, subunit III; PFAM: Cytochrome c oxidase, subunit III
YP_005716997.1	KEGG: smd:Smed_4371 cytochrome o ubiquinol oxidase subunit I; TIGRFAM: Cytochrome o ubiquinol oxidase, subunit I; PFAM: Cytochrome c oxidase, subunit I
YP_005716998.1	KEGG: smd:Smed_4372 ubiquinol oxidase, subunit II; TIGRFAM: Cytochrome o ubiquinol oxidase subunit II; PFAM: COX aromatic rich; Cytochrome c oxidase subunit II C-terminal
YP_005716999.1	PFAM: General substrate transporter; KEGG: smd:Smed_4373 general substrate transporter
YP_005717000.1	KEGG: smd:Smed_4374 hypothetical protein
YP_005717001.1	KEGG: rhi:NGR_b18760 hypothetical protein
YP_005717002.1	KEGG: smd:Smed_4376 ECF subfamily RNA polymerase sigma-24 factor; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2
YP_005717003.1	PFAM: Protein of unknown function DUF1236; KEGG: smd:Smed_4377 hypothetical protein
YP_005717004.1	KEGG: smd:Smed_4378 hypothetical protein
YP_005717005.1	KEGG: smd:Smed_4379 signal-transduction protein; PFAM: Cystathionine beta-synthase, core; SMART: Cystathionine beta-synthase, core
YP_005717006.1	PFAM: Protein of unknown function DUF982; KEGG: smd:Smed_4380 hypothetical protein
YP_005717007.1	KEGG: smd:Smed_4381 hypothetical protein
YP_005717008.1	PFAM: Reverse transcriptase; Group II intron, maturase-specific; KEGG: bxe:Bxe_A2660 putative reverse transcriptase-maturase-endonucleas
YP_005717009.1	KEGG: smd:Smed_4382 3-ketoacyl-(acyl-carrier-protein) reductase; PFAM: Short-chain dehydrogenase/reductase SDR
YP_005717010.1	KEGG: smd:Smed_4383 hypothetical protein
YP_005717011.1	PFAM: Low affinity iron permease, Fet4; KEGG: smd:Smed_6346 hypothetical protein
YP_005717012.1	PFAM: Protein of unknown function DUF982; KEGG: smd:Smed_4385 hypothetical protein
YP_005717013.1	PFAM: Protein of unknown function DUF982; KEGG: smd:Smed_4386 hypothetical protein
YP_005717014.1	PFAM: Protein of unknown function DUF982; KEGG: smd:Smed_4387 hypothetical protein
YP_005717015.1	PFAM: Protein of unknown function DUF475; KEGG: smd:Smed_4388 hypothetical protein
YP_005717016.1	KEGG: smd:Smed_4389 hypothetical protein
YP_005717017.1	SMART: ATPase, AAA+ type, core; TIGRFAM: ATPase, type I secretion system, PrtD; KEGG: smd:Smed_4390 type I secretion system ATPase; PFAM: ABC transporter-like; ABC transporter, transmembrane domain
YP_005717018.1	KEGG: smd:Smed_4391 HlyD family type I secretion membrane fusion protein; TIGRFAM: Type I secretion membrane fusion protein, HlyD; PFAM: Secretion protein HlyD
YP_005717019.1	KEGG: smd:Smed_4392 GntR family transcriptional regulator; PFAM: UbiC transcription regulator-associated; HTH transcriptional regulator, GntR; SMART: UbiC transcription regulator-associated; HTH transcriptional regulator, GntR
YP_005717020.1	KEGG: smd:Smed_4393 glycoside hydrolase family protein; PFAM: Glycoside hydrolase, family 4; Glycosyl hydrolase, family 4, C-terminal
YP_005717021.1	PFAM: Carbohydrate/purine kinase; KEGG: smd:Smed_4394 ribokinase-like domain-containing protein
YP_005717022.1	PFAM: Bacterial extracellular solute-binding, family 1; KEGG: smd:Smed_4395 extracellular solute-binding protein
YP_005717023.1	PFAM: ABC transporter-like; Transport-associated OB, type 2; KEGG: smd:Smed_4396 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_005717024.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_4397 binding-protein-dependent transport systems inner membrane component
YP_005717025.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_4398 binding-protein-dependent transport systems inner membrane component
YP_005717026.1	KEGG: smd:Smed_4399 hypothetical protein
YP_005717027.1	PFAM: Protein of unknown function DUF763; KEGG: smd:Smed_4400 hypothetical protein
YP_005717028.1	KEGG: smd:Smed_4401 hypothetical protein
YP_005717029.1	KEGG: smd:Smed_4402 hypothetical protein
YP_005717030.1	KEGG: smd:Smed_4403 hypothetical protein
YP_005717031.1	KEGG: smd:Smed_4404 hypothetical protein
YP_005717032.1	PFAM: Cupin 2, conserved barrel; KEGG: smd:Smed_4405 hypothetical protein
YP_005717033.1	PFAM: Glutathione S-transferase, C-terminal; KEGG: smd:Smed_4406 putative glutathione S-transferase protein
YP_005717034.1	KEGG: smd:Smed_4407 phage SPO1 DNA polymerase-related protein; TIGRFAM: Phage SPO1 DNA polymerase-related protein; PFAM: Uracil-DNA glycosylase-like
YP_005717035.1	TIGRFAM: Malto-oligosyltrehalose trehalohydrolase; KEGG: smd:Smed_4408 malto-oligosyltrehalose trehalohydrolase; PFAM: Glycosyl hydrolase, family 13, catalytic domain; Malto-oligosyltrehalose trehalohydrolase, bacterial, C-terminal; Glycoside hydrolase, family 13, N-terminal
YP_005717036.1	TIGRFAM: Glycogen debranching enzyme; KEGG: smd:Smed_4409 glycogen debranching enzyme GlgX; PFAM: Glycoside hydrolase, family 13, N-terminal; Glycosyl hydrolase, family 13, catalytic domain
YP_005717037.1	PFAM: DNA topoisomerase I, catalytic core, eukaryotic-type; KEGG: smd:Smed_4410 putative DNA topoisomerase I protein
YP_005717038.1	KEGG: smd:Smed_4411 transport-associated; PFAM: Transport-associated; SMART: Transport-associated and nodulation domain, bacteria
YP_005717039.1	PFAM: Protein of unknown function DUF2934; KEGG: smd:Smed_4413 hypothetical protein
YP_005717040.1	KEGG: smd:Smed_4414 CBS domain-containing protein; PFAM: Cystathionine beta-synthase, core; SMART: Cystathionine beta-synthase, core
YP_005717041.1	KEGG: smd:Smed_4415 hypothetical protein
YP_005717042.1	KEGG: smd:Smed_4416 hypothetical protein
YP_005717043.1	PFAM: Endoribonuclease L-PSP; KEGG: ara:Arad_7230 translation initiation inhibitor protein
YP_005717044.1	KEGG: bpt:Bpet2345 putative TRAP-type C4-dicarboxylate transport system, periplasmic component; TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: Extracellular solute-binding protein, family 7, bacteria
YP_005717045.1	PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: bbr:BB2652 hypothetical protein
YP_005717046.1	KEGG: axy:AXYL_03094 TRAP transporter subunit DctM 5; TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit
YP_005717047.1	TIGRFAM: Amidase, hydantoinase/carbamoylase; KEGG: mno:Mnod_6086 allantoate amidohydrolase; PFAM: Peptidase M20
YP_005717048.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: ara:Arad_7236 transcriptional regulator protein
YP_005717049.1	PFAM: Methyltransferase type 11; KEGG: smd:Smed_4417 methyltransferase type 11
YP_005717050.1	PFAM: Periplasmic binding protein; KEGG: smd:Smed_4418 periplasmic binding protein
YP_005717051.1	PFAM: ABC transporter permease protein; KEGG: smd:Smed_4419 transport system permease protein
YP_005717052.1	PFAM: ABC transporter-like; KEGG: smd:Smed_4420 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_005717053.1	TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase-related; KEGG: rhi:NGR_c24400 dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 3,5-epimerase-related
YP_005717054.1	KEGG: rhi:NGR_c24390 putative acetyltransferase protein
YP_005717055.1	PFAM: NAD-dependent epimerase/dehydratase; KEGG: rhi:NGR_c24380 hypothetical protein
YP_005717056.1	PFAM: Rhamnosyl O-methyltransferase/Cephalosporin hydroxylase; KEGG: rhi:NGR_c24370 cephalosporin hydroxylase
YP_005717057.1	KEGG: cwo:Cwoe_2493 peptidase S15; TIGRFAM: CocE/NonD hydrolase; SMART: Peptidase S15/CocE/NonD, C-terminal
YP_005717058.1	PFAM: ABC transporter permease; KEGG: rlg:Rleg_6089 inner-membrane translocator
YP_005717059.1	PFAM: ABC transporter-like; KEGG: gct:GC56T3_3247 ABC transporter related protein; SMART: ATPase, AAA+ type, core
YP_005717060.1	PFAM: Periplasmic binding protein/LacI transcriptional regulator; KEGG: nml:Namu_0390 ABC-type sugar transport system periplasmic component-like protein
YP_005717061.1	PFAM: L-fucose isomerase-like, C-terminal; L-arabinose isomerase; KEGG: rle:RL0632 putative L-arabinose isomerase
YP_005717063.1	KEGG: rle:RL0628 AraC family transcriptional regulator; PFAM: HTH transcriptional regulator, AraC, arabinose-binding/dimerisation; HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain
YP_005717064.1	PFAM: C-methyltransferase; Methyltransferase type 11; Methyltransferase hyptothetical; KEGG: rhi:NGR_c24360 putative SAM-dependent methyltransferase
YP_005717065.1	TIGRFAM: CDP-glucose 4,6-dehydratase; KEGG: rhi:NGR_c24350 CDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase
YP_005717066.1	TIGRFAM: Glucose-1-phosphate cytidylyltransferase; KEGG: rhi:NGR_c24340 LPS side chain defect: glucose-1-phosphate cytidylyltransferase; PFAM: Nucleotidyl transferase
YP_005717067.1	KEGG: smd:Smed_4422 FAD linked oxidase domain-containing protein; PFAM: FAD linked oxidase, N-terminal; Berberine/berberine-like
YP_005717068.1	KEGG: smd:Smed_4423 pyridoxal-dependent decarboxylase; PFAM: Pyridoxal phosphate-dependent decarboxylase
YP_005717069.1	KEGG: smd:Smed_4424 calcium-binding EF-hand-containing protein
YP_005717070.1	PFAM: Protein of unknown function DUF488; KEGG: rhi:NGR_c24300 hypothetical protein
YP_005717071.1	KEGG: smd:Smed_4426 hypothetical protein
YP_005717072.1	PFAM: Methyltransferase type 11; KEGG: smd:Smed_4427 methyltransferase type 11
YP_005717073.1	SMART: DNA helicase, ATP-dependent, Ku type; TIGRFAM: Ku, prokaryotic type; KEGG: smd:Smed_1427 Ku family containing protein; HAMAP: Ku, prokaryotic type; PFAM: DNA helicase, ATP-dependent, Ku type
YP_005717074.1	SMART: DNA helicase, ATP-dependent, Ku type; TIGRFAM: Ku, prokaryotic type; KEGG: smd:Smed_1426 Ku family containing protein; HAMAP: Ku, prokaryotic type; PFAM: DNA helicase, ATP-dependent, Ku type
YP_005717075.1	KEGG: bja:bll2273 hypothetical protein; manually curated; PFAM: Isochorismatase-like
YP_005717076.1	PFAM: Transposase, mutator type; KEGG: sjp:SJA_P2-00250 putative transposase
YP_005717077.1	PFAM: Haemolysin-type calcium-binding repeat; KEGG: smd:Smed_4565 hemolysin-type calcium-binding region
YP_005717080.1	PFAM: Protein of unknown function DUF3606; KEGG: smd:Smed_6347 hypothetical protein
YP_005717081.1	KEGG: smd:Smed_4828 hypothetical protein
YP_005717082.1	KEGG: smd:Smed_4834 hypothetical protein
YP_005717083.1	PFAM: Integrase, catalytic core; KEGG: lpn:lpg2119 transposase (ISmav2)
YP_005717084.1	KEGG: atu:Atu5032 hypothetical protein
YP_005717087.1	PFAM: Excinuclease ABC, C subunit, N-terminal; SMART: Excinuclease ABC, C subunit, N-terminal
YP_005717089.1	PFAM: Glycoside hydrolase, family 24; KEGG: mag:amb3986 phage-related lysozyme
YP_005717091.1	KEGG: rlt:Rleg2_0709 hypothetical protein
YP_005717092.1	KEGG: smd:Smed_1813 hypothetical protein
YP_005717093.1	KEGG: smd:Smed_1814 hypothetical protein
YP_005717094.1	KEGG: nar:Saro_2993 hypothetical protein
YP_005717095.1	KEGG: rlt:Rleg2_2414 hypothetical protein
YP_005717096.1	KEGG: azc:AZC_0850 hypothetical protein
YP_005717097.1	KEGG: dvi:Dvir_GJ10761 GJ10761 gene product from transcript GJ10761-RA
YP_005717100.1	KEGG: azc:AZC_0846 hypothetical protein
YP_005717101.1	KEGG: smd:Smed_1822 hypothetical protein
YP_005717103.1	KEGG: dac:Daci_1946 putative phage major head protein
YP_005717104.1	KEGG: dac:Daci_1945 hypothetical protein
YP_005717106.1	KEGG: dac:Daci_1943 hypothetical protein
YP_005717107.1	KEGG: tit:Thit_1395 hypothetical protein
YP_005717113.1	manually curated; PFAM: Resolvase, N-terminal; KEGG: ret:RHE_CH00235 recombinase; SMART: Resolvase, N-terminal
YP_005717115.1	KEGG: sjp:SJA_C1-08720 hypothetical protein
YP_005717119.1	KEGG: sno:Snov_2903 hypothetical protein
YP_005717122.1	KEGG: atu:Atu5035 hypothetical protein
YP_005717124.1	PFAM: Integrase, catalytic core, phage; KEGG: oan:Oant_1310 hypothetical protein
YP_005717125.1	PFAM: ABC transporter-like; KEGG: smd:Smed_4465 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_005717126.1	PFAM: ABC transporter permease; KEGG: smd:Smed_4466 inner-membrane translocator
YP_005717127.1	TIGRFAM: D-xylose ABC transporter, substrate-binding protein; KEGG: smd:Smed_4467 D-xylose ABC transporter, periplasmic substrate-binding protein
YP_005717128.1	PFAM: Phospholipase/carboxylesterase; KEGG: rhi:NGR_b15990 phospholipase/carboxylesterase family protein
YP_005717129.1	KEGG: smd:Smed_6326 putative L-sorbosone dehydrogenase
YP_005717130.1	KEGG: smd:Smed_5606 GCN5-related N-acetyltransferase
YP_005717131.1	TIGRFAM: Acetylornithine deacetylase (ArgE); KEGG: smd:Smed_5605 acetylornithine deacetylase; PFAM: Peptidase M20; Peptidase M20, dimerisation
YP_005717132.1	KEGG: smd:Smed_5604 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding
YP_005717133.1	PFAM: Domain of unknown function DUF861, cupin-3; KEGG: smd:Smed_5603 protein of unknown function DUF861 cupin_3
YP_005717134.1	PFAM: Aldehyde dehydrogenase domain; KEGG: smd:Smed_5602 aldehyde dehydrogenase
YP_005717135.1	TIGRFAM: Tartrate dehydrogenase; KEGG: smd:Smed_5601 3-isopropylmalate dehydrogenase; PFAM: Isocitrate/isopropylmalate dehydrogenase
YP_005717136.1	TIGRFAM: Succinic semialdehyde dehydrogenase; KEGG: smd:Smed_5600 succinic semialdehyde dehydrogenase; PFAM: Aldehyde dehydrogenase domain
YP_005717137.1	PFAM: FAD dependent oxidoreductase; KEGG: smd:Smed_5599 FAD dependent oxidoreductase
YP_005717138.1	TIGRFAM: Haloacid dehalogenase, type II; HAD-superfamily hydrolase, subfamily IA, variant 2; KEGG: smd:Smed_5598 haloacid dehalogenase, type II
YP_005717139.1	PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: smd:Smed_5597 GCN5-related N-acetyltransferase
YP_005717140.1	KEGG: smd:Smed_5596 hypothetical protein; PFAM: Aminotransferase class-III
YP_005717141.1	KEGG: smd:Smed_5595 HAD family hydrolase; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 2; PFAM: Haloacid dehalogenase-like hydrolase
YP_005717142.1	PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: smd:Smed_5594 extracellular solute-binding protein
YP_005717143.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_5593 binding-protein-dependent transport systems inner membrane component
YP_005717144.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_5592 binding-protein-dependent transport systems inner membrane component
YP_005717145.1	PFAM: ABC transporter-like; Oligopeptide/dipeptide ABC transporter, C-terminal; KEGG: smd:Smed_5591 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_005717146.1	KEGG: smd:Smed_5590 AsnC family transcriptional regulator; PFAM: Transcription regulator AsnC-type, C-terminal; SMART: Transcription regulator AsnC-type
YP_005717147.1	PFAM: FAD dependent oxidoreductase; KEGG: smd:Smed_5589 FAD dependent oxidoreductase
YP_005717148.1	KEGG: rhi:NGR_b06500 ornithine cyclodeaminase 2; PFAM: Ornithine cyclodeaminase/mu-crystallin
YP_005717149.1	TIGRFAM: ATPase, P-type, heavy metal translocating; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; KEGG: pmx:PERMA_1145 copper-translocating P-type ATPase; PFAM: ATPase, P-type, ATPase-associated domain; Haloacid dehalogenase-like hydrolase
YP_005717150.1	KEGG: sul:SYO3AOP1_0850 hypothetical protein
YP_005717154.1	PFAM: Cytochrome c oxidase, monohaem subunit/FixO; KEGG: aba:Acid345_0435 hypothetical protein
YP_005717155.1	KEGG: sus:Acid_3507 cytochrome c oxidase, subunit I; PFAM: Cytochrome c oxidase, subunit I
YP_005717157.1	KEGG: bja:bll2059 chaperonin GroEL; TIGRFAM: Chaperonin Cpn60; PFAM: Chaperonin Cpn60/TCP-1
YP_005717158.1	TIGRFAM: Tetrapyrrole biosynthesis, 5-aminolevulinic acid synthase; KEGG: bbt:BBta_0861 5-aminolevulinate synthase; PFAM: Aminotransferase, class I/classII
YP_005717159.1	PFAM: Copper chaperone SCO1/SenC; KEGG: pla:Plav_0014 classical-complement-pathway C3/C5 convertase
YP_005717160.1	KEGG: afw:Anae109_2853 putative lipoprotein
YP_005717161.1	PFAM: Metallo-dependent phosphatase; KEGG: afw:Anae109_2854 metallophosphoesterase
YP_005717162.1	KEGG: afw:Anae109_2855 hypothetical protein
YP_005717163.1	PFAM: Flavocytochrome c sulphide dehydrogenase, flavin-binding; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: pde:Pden_4158 FAD-dependent pyridine nucleotide-disulphide oxidoreductase
YP_005717164.1	KEGG: xau:Xaut_1516 cytochrome c553-like protein
YP_005717165.1	PFAM: Sulphur oxidation protein SoxZ; KEGG: mag:amb0855 hypothetical protein
YP_005717166.1	KEGG: sno:Snov_0971 sulfur oxidation protein SoxY
YP_005717167.1	KEGG: bja:blr6977 transcriptional regulator; PFAM: Aminotransferase, class I/classII; HTH transcriptional regulator, GntR; SMART: HTH transcriptional regulator, GntR
YP_005717168.1	PFAM: Cupin 2, conserved barrel; KEGG: rhi:NGR_b05650 cupin domain protein
YP_005717169.1	KEGG: rhi:NGR_b05640 putative cytoplasmic protein; TIGRFAM: Alkylhydroperoxidase AhpD core; PFAM: Carboxymuconolactone decarboxylase
YP_005717170.1	PFAM: NAD-dependent epimerase/dehydratase; KEGG: gdj:Gdia_3158 NAD-dependent epimerase/dehydratase
YP_005717171.1	PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: rhi:NGR_b05740 putative transcriptional regulator, TetR family
YP_005717172.1	PFAM: Protein of unknown function DUF1127
YP_005717173.1	TIGRFAM: Thioredoxin reductase; KEGG: rhi:NGR_b05720 thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region
YP_005717174.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: smd:Smed_5574 LysR family transcriptional regulator
YP_005717175.1	TIGRFAM: Methionine sulphoxide reductase B; KEGG: smd:Smed_5573 methionine sulfoxide reductase B; PFAM: Methionine sulphoxide reductase B
YP_005717176.1	PFAM: Peptide methionine sulphoxide reductase MsrA; TIGRFAM: Peptide methionine sulphoxide reductase MsrA; HAMAP: Peptide methionine sulphoxide reductase MsrA; KEGG: smd:Smed_5572 methionine sulfoxide reductase A
YP_005717177.1	PFAM: Peroxiredoxin, OsmC-like protein; Alpha/beta hydrolase fold-1; KEGG: smd:Smed_5571 OsmC family protein
YP_005717178.1	PFAM: Peptidase S8/S53, subtilisin/kexin/sedolisin; KEGG: smd:Smed_5774 peptidase S8/S53 subtilisin kexin sedolisin
YP_005717179.1	KEGG: rhi:NGR_b23220 hypothetical protein
YP_005717180.1	PFAM: Glycosyl transferase, family 51; Penicillin-binding protein, transpeptidase; BA14K-like; manually curated; KEGG: rlt:Rleg2_0767 penicillin-binding protein, 1A family; TIGRFAM: Penicillin-binding protein 1A
YP_005717181.1	PFAM: Protein of unknown function DUF2934; KEGG: smd:Smed_5308 hypothetical protein
YP_005717182.1	KEGG: smd:Smed_5307 hypothetical protein
YP_005717183.1	KEGG: smd:Smed_5306 hypothetical protein
YP_005717184.1	PFAM: Protein of unknown function DUF1488; KEGG: smd:Smed_5304 hypothetical protein
YP_005717185.1	KEGG: nhl:Nhal_2818 Na+/H+ antiporter NhaA; TIGRFAM: Na+/H+ antiporter NhaA; PFAM: Na+/H+ antiporter NhaA
YP_005717186.1	PFAM: Divalent ion symporter; Regulator of K+ conductance, C-terminal; KEGG: met:M446_0502 TrkA domain-containing protein
YP_005717187.1	manually curated; KEGG: smd:Smed_5301 hypothetical protein
YP_005717188.1	KEGG: smd:Smed_5300 hypothetical protein
YP_005717190.1	PFAM: LysR, substrate-binding; KEGG: rle:pRL120548 LysR family transcriptional regulator
YP_005717191.1	KEGG: rlt:Rleg2_1657 transcriptional regulator, MarR family; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR
YP_005717192.1	KEGG: rle:RL2319 hypothetical protein; PFAM: Monooxygenase, FAD-binding
YP_005717193.1	PFAM: Major facilitator superfamily MFS-1; KEGG: rlg:Rleg_1859 major facilitator superfamily MFS_1
YP_005717194.1	PFAM: Activator of Hsp90 ATPase homologue 1-like; KEGG: sno:Snov_3676 activator of HSP90 ATPase 1 family protein
YP_005717195.1	KEGG: sno:Snov_3677 transcriptional regulator, ArsR family; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR
YP_005717197.1	KEGG: mes:Meso_4397 hypothetical protein
YP_005717198.1	KEGG: smd:Smed_5284 hypothetical protein
YP_005717199.1	KEGG: rlg:Rleg_0688 hypothetical protein
YP_005717200.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: smd:Smed_5292 LysR family transcriptional regulator
YP_005717201.1	TIGRFAM: Flavoprotein WrbA; HAMAP: Flavoprotein WrbA; KEGG: smd:Smed_5291 TrpR binding protein WrbA; PFAM: Flavodoxin/nitric oxide synthase
YP_005717202.1	PFAM: Major facilitator superfamily MFS-1; KEGG: mag:amb2984 major facilitator superfamily permease
YP_005717203.1	KEGG: rlt:Rleg2_1649 hypothetical protein; PFAM: Monooxygenase, FAD-binding
YP_005717204.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: smd:Smed_5289 LysR family transcriptional regulator
YP_005717205.1	PFAM: Drug/metabolite transporter; KEGG: smd:Smed_5288 hypothetical protein
YP_005717206.1	KEGG: smd:Smed_5716 hypothetical protein
YP_005717207.1	KEGG: rhi:NGR_b05190 hypothetical protein; PFAM: Cyclic nucleotide-binding domain; SMART: Cyclic nucleotide-binding domain
YP_005717209.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: smd:Smed_5282 LysR family transcriptional regulator
YP_005717210.1	KEGG: smd:Smed_5281 NmrA family protein
YP_005717211.1	PFAM: Major facilitator superfamily MFS-1; KEGG: ara:Arad_0328 antibiotic resistance permease protein
YP_005717212.1	PFAM: Helix-turn-helix, HxlR type; KEGG: ara:Arad_0329 transcriptional regulator protein
YP_005717213.1	TIGRFAM: Esterase, PHB depolymerase; KEGG: rle:RL2023 putative poly(3-hydroxyalkanoate) depolymerase C precursor
YP_005717214.1	PFAM: Leucine carboxyl methyltransferase; KEGG: rhi:NGR_c34300 predicted polyketide synthesis O-methyltransferase, TcmP type protein
YP_005717215.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: atu:Atu4288 LysR family transcriptional regulator
YP_005717216.1	PFAM: ThiJ/PfpI; KEGG: atu:Atu4287 NonF-related protein
YP_005717217.1	PFAM: ThiJ/PfpI; KEGG: atu:Atu4286 hypothetical protein
YP_005717218.1	PFAM: Antibiotic biosynthesis monooxygenase
YP_005717219.1	PFAM: Oxidoreductase, N-terminal; KEGG: cyn:Cyan7425_2895 oxidoreductase domain protein
YP_005717221.1	PFAM: Class II aldolase/adducin, N-terminal; KEGG: ara:Arad_10028 hypothetical protein
YP_005717222.1	KEGG: bxe:Bxe_B0322 HAD family hydrolase; TIGRFAM: Haloacid dehalogenase, type II; HAD-superfamily hydrolase, subfamily IA, variant 2; PFAM: Haloacid dehalogenase-like hydrolase
YP_005717223.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: bxe:Bxe_B0323 LysR family transcriptional regulator
YP_005717226.1	PFAM: NAD-dependent epimerase/dehydratase; KEGG: hba:Hbal_3161 NAD-dependent epimerase/dehydratase
YP_005717227.1	KEGG: xca:xccb100_3912 transcriptional regulator, LysR family; manually curated; PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR
YP_005717228.1	KEGG: rlt:Rleg2_5180 hypothetical protein
YP_005717229.1	KEGG: rlt:Rleg2_5179 HicB family protein
YP_005717230.1	PFAM: Protein of unknown function DUF849, prokaryotic; KEGG: mlo:mll1845 hypothetical protein
YP_005717231.1	TIGRFAM: Excisionase/Xis, DNA-binding; KEGG: rpc:RPC_4424 excisionase/Xis, DNA-binding
YP_005717232.1	KEGG: rpc:RPC_4423 hypothetical protein
YP_005717233.1	PFAM: Lipase, GDSL; KEGG: mjl:Mjls_5554 GDSL family lipase
YP_005717234.1	PFAM: ABC transporter permease; KEGG: ret:RHE_PD00131 sugar ABC transporter, permease protein
YP_005717235.1	PFAM: ABC transporter permease; KEGG: rec:RHECIAT_PB0000145 sugar ABC transporter, permease protein
YP_005717236.1	PFAM: ABC transporter-like; KEGG: rec:RHECIAT_PB0000144 sugar ABC transporter, ATP-binding protein; SMART: ATPase, AAA+ type, core
YP_005717237.1	PFAM: Periplasmic binding protein/LacI transcriptional regulator; KEGG: rec:RHECIAT_PB0000143 sugar ABC transporter, substrate-binding protein
YP_005717238.1	PFAM: Lipase, GDSL; KEGG: bur:Bcep18194_A4475 lipolytic protein
YP_005717239.1	PFAM: ROK; HTH transcriptional regulator, MarR; KEGG: oan:Oant_0068 ROK family protein
YP_005717240.1	PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: rlg:Rleg_0845 transcriptional regulator, TetR family
YP_005717241.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: rlg:Rleg_0846 glyoxalase/bleomycin resistance protein/dioxygenase
YP_005717242.1	KEGG: rlg:Rleg_1571 hypothetical protein
YP_005717243.1	KEGG: smd:Smed_0367 hypothetical protein
YP_005717244.1	KEGG: rle:pRL120291 MarR family transcriptional regulator; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR
YP_005717245.1	PFAM: Protein of unknown function DUF1234; KEGG: rle:pRL120290 hypothetical protein
YP_005717246.1	KEGG: rle:pRL120289 putative choline dehydrogenase; PFAM: Glucose-methanol-choline oxidoreductase, N-terminal; Glucose-methanol-choline oxidoreductase, C-terminal
YP_005717247.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: atu:Atu3810 LysR family transcriptional regulator
YP_005717248.1	PFAM: Isochorismatase-like; KEGG: vap:Vapar_1916 isochorismatase hydrolase
YP_005717249.1	KEGG: mlo:mll4372 transglycolase
YP_005717250.1	KEGG: ara:Arad_8996 cold shock protein; PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein
YP_005717251.1	PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: brh:RBRH_00300 transcriptional regulator, TetR family
YP_005717252.1	PFAM: Alpha/beta hydrolase fold-1; KEGG: brh:RBRH_00301 arylesterase
YP_005717253.1	KEGG: atu:Atu3664 epoxide hydrolase; PFAM: Alpha/beta hydrolase fold-1
YP_005717254.1	PFAM: Transcription regulator Rrf2; KEGG: atu:Atu3663 hypothetical protein
YP_005717255.1	PFAM: Ferredoxin; Oxidoreductase FAD/NAD(P)-binding; Oxidoreductase, FAD-binding domain; KEGG: smd:Smed_5978 ferredoxin
YP_005717256.1	PFAM: Rieske [2Fe-2S] iron-sulphur domain; KEGG: smd:Smed_5979 Rieske (2Fe-2S) domain-containing protein
YP_005717257.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: smd:Smed_5980 LysR family transcriptional regulator
YP_005717258.1	PFAM: Methyltransferase type 11; KEGG: smd:Smed_6054 methyltransferase type 11
YP_005717260.1	KEGG: smd:Smed_6059 hypothetical protein
YP_005717261.1	KEGG: smd:Smed_6060 amino acid carrier protein; TIGRFAM: Sodium:alanine symporter; PFAM: Sodium:alanine symporter
YP_005717262.1	KEGG: smd:Smed_6061 hypothetical protein
YP_005717263.1	PFAM: NUDIX hydrolase domain; KEGG: smd:Smed_5998 NUDIX hydrolase
YP_005717264.1	KEGG: atu:Atu4214 cold shock protein; PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein
YP_005717265.1	PFAM: Protein of unknown function DUF3606; KEGG: smd:Smed_6347 hypothetical protein
YP_005717267.1	KEGG: smd:Smed_6170 hypothetical protein
YP_005717268.1	KEGG: smd:Smed_1634 hypothetical protein
YP_005717269.1	KEGG: smd:Smed_4778 hypothetical protein
YP_005717270.1	KEGG: smd:Smed_1867 chitinase-like protein; manually curated; PFAM: Peptidoglycan binding-like
YP_005717271.1	manually curated; KEGG: smd:Smed_6070 hypothetical protein
YP_005717272.1	KEGG: smd:Smed_3241 thioredoxin; TIGRFAM: Thioredoxin; PFAM: Thioredoxin domain
YP_005717273.1	KEGG: mlo:mlr5878 gamma-BHC dehydrochlorinase
YP_005717274.1	PFAM: Luciferase-like, subgroup; KEGG: rhi:NGR_a01140 conserved hypothetical 39.1 kDa protein
YP_005717275.1	KEGG: ara:Arad_7394 sulfur carrier protein ThiS; TIGRFAM: ThiS, thiamine-biosynthesis; PFAM: ThiamineS
YP_005717276.1	PFAM: Thiazole biosynthesis; KEGG: ara:Arad_7393 thiazole synthase
YP_005717277.1	PFAM: Transposase IS3/IS911family; KEGG: ara:Arad_9823 insertion sequence transposase protein
YP_005717278.1	PFAM: Transposase, IS116/IS110/IS902; Transposase, IS111A/IS1328/IS1533, N-terminal; KEGG: smd:Smed_6239 transposase IS116/IS110/IS902 family protein
YP_005717279.1	KEGG: smd:Smed_6457 AsnC family transcriptional regulator; PFAM: Transcription regulator AsnC-type, C-terminal; SMART: Transcription regulator AsnC-type
YP_005717280.1	TIGRFAM: 1-aminocyclopropane-1-carboxylate deaminase; KEGG: smd:Smed_6456 1-aminocyclopropane-1-carboxylate deaminase; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit
YP_005717281.1	TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; PAS fold-4; KEGG: oca:OCAR_6732 diguanylate cyclase/phosphodiesterase; SMART: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted
YP_005717282.1	KEGG: avi:Avi_8233 hypothetical protein
YP_005717283.1	PFAM: Transposase (putative), IS66 Orf2-like; KEGG: ret:RHE_PA00099 putative insertion sequence transposase protein
YP_005717284.1	PFAM: Transposase IS3/IS911family; KEGG: rle:pRL70041 putative insertion sequence protein
YP_005717285.1	PFAM: Domain of unknown function DUF88; KEGG: rhi:NGR_b08150 hypothetical protein
YP_005717286.1	manually curated
YP_005717287.1	KEGG: smd:Smed_6120 hypothetical protein
YP_005717288.1	KEGG: smd:Smed_6119 hypothetical protein
YP_005717289.1	KEGG: rhi:NGR_b02260 putative transcriptional regulator protein, LuxR family; PFAM: Transcription regulator LuxR, C-terminal; SMART: Transcription regulator LuxR, C-terminal
YP_005717290.1	PFAM: Mg2+ transporter protein, CorA-like; KEGG: rlg:Rleg_5733 magnesium and cobalt transport protein CorA
YP_005717291.1	PFAM: Transposase, IS66; KEGG: rle:pRL70138 putative insertion sequence transposase-like protein
YP_005717292.1	KEGG: smd:Smed_6428 hypothetical protein
YP_005717293.1	KEGG: smd:Smed_6429 monophenol monooxygenase; PFAM: Tyrosinase
YP_005717294.1	KEGG: smd:Smed_6430 hypothetical protein
YP_005717295.1	PFAM: Multicopper oxidase, type 2; Multicopper oxidase, type 3; KEGG: smd:Smed_6431 multicopper oxidase type 2
YP_005717296.1	PFAM: Cytochrome P450; KEGG: mlo:mlr6364 cytochrome P-450
YP_005717297.1	KEGG: smd:Smed_6052 hypothetical protein
YP_005717298.1	KEGG: smd:Smed_6079 hypothetical protein
YP_005717300.1	manually curated; PFAM: GCN5-related N-acetyltransferase (GNAT) domain
YP_005717301.1	TIGRFAM: Acyl carrier protein (ACP); HAMAP: Acyl carrier protein (ACP); KEGG: smd:Smed_6081 acyl carrier protein; PFAM: Phosphopantetheine-binding
YP_005717302.1	KEGG: rhi:NGR_c04090 co-chaperonin GroES; PFAM: Chaperonin Cpn10; SMART: Chaperonin Cpn10
YP_005717303.1	KEGG: smd:Smed_0408 chaperonin GroEL; TIGRFAM: Chaperonin Cpn60; PFAM: Chaperonin Cpn60/TCP-1
YP_005717304.1	KEGG: sil:SPO1226 putative lipoprotein
YP_005717305.1	PFAM: Protein of unknown function DUF1353; KEGG: rhi:NGR_a02950 hypothetical 36.4 kDa protein
YP_005717306.1	PFAM: Protein of unknown function DUF2235; KEGG: nha:Nham_0079 hypothetical protein
YP_005717307.1	KEGG: rhi:NGR_c34320 hypothetical protein
YP_005717308.1	PFAM: Glycoside hydrolase, family 24; KEGG: rhi:NGR_c34310 phage-related lysozyme
YP_005717309.1	KEGG: cpb:Cphamn1_1330 hypothetical protein
YP_005717310.1	PFAM: Peptidase C14, caspase catalytic
YP_005717312.1	PFAM: Integrase, catalytic core; KEGG: smd:Smed_6420 integrase catalytic region
YP_005717313.1	PFAM: Metallo-dependent phosphatase; KEGG: mil:ML5_3785 metallophosphoesterase
YP_005717315.1	PFAM: Adenylosuccinate synthetase; KEGG: cai:Caci_0498 adenylosuccinate synthase; SMART: Adenylosuccinate synthetase
YP_005717316.1	KEGG: met:M446_1288 hypothetical protein
YP_005717317.1	KEGG: aav:Aave_1670 hypothetical protein
YP_005717318.1	KEGG: bph:Bphy_4979 hypothetical protein
YP_005717319.1	PFAM: Protein of unknown function DUF955; KEGG: rsp:RSP_4244 hypothetical protein
YP_005717321.1	KEGG: mms:mma_0997 hypothetical protein
YP_005717322.1	KEGG: nha:Nham_1370 hypothetical protein
YP_005717323.1	PFAM: UBA/THIF-type NAD/FAD binding fold; KEGG: nha:Nham_1369 UBA/ThiF-type NAD/FAD binding fold
YP_005717324.1	KEGG: nha:Nham_1368 hypothetical protein
YP_005717326.1	KEGG: rhi:NGR_b00600 hypothetical protein; TIGRFAM: Prevent-host-death protein; PFAM: Prevent-host-death protein
YP_005717327.1	PFAM: PilT protein, N-terminal; KEGG: rhi:NGR_b00590 hypothetical protein
YP_005717328.1	KEGG: rhi:NGR_b00580 hypothetical protein
YP_005717329.1	PFAM: Integrase, catalytic core, phage; KEGG: smd:Smed_5431 phage integrase family protein
YP_005717330.1	KEGG: smd:Smed_5425 hypothetical protein
YP_005717331.1	manually curated; KEGG: smd:Smed_6494 hypothetical protein
YP_005717332.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: rle:RL2545 hypothetical protein
YP_005717333.1	KEGG: rhi:NGR_b10150 hypothetical protein
YP_005717334.1	PFAM: Uncharacterised protein family UPF0156/MetJ /Arc repressor; KEGG: rhi:NGR_b10140 hypothetical protein
YP_005717335.1	KEGG: smd:Smed_5424 RES domain-containing protein; PFAM: RES; SMART: RES
YP_005717336.1	TIGRFAM: Conserved hypothetical protein CHP02293; KEGG: smd:Smed_5423 hypothetical protein
YP_005717337.1	KEGG: rhi:NGR_b10090 DNA integration/recombination/invertion protein
YP_005717338.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: reh:H16_B2516 LysR family transcriptional regulator
YP_005717339.1	PFAM: Endoribonuclease L-PSP; KEGG: reh:H16_B2517 putative regulator of purine biosynthesis
YP_005717340.1	KEGG: reh:H16_B2518 NADH-dependent flavin oxidoreductase YqiG; PFAM: NADH:flavin oxidoreductase/NADH oxidase, N-terminal
YP_005717341.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: smd:Smed_5369 LysR family transcriptional regulator
YP_005717342.1	TIGRFAM: Penicillin-binding protein 1A; KEGG: mlo:mlr0215 penicillin-binding protein; PFAM: Glycosyl transferase, family 51; Penicillin-binding protein, transpeptidase
YP_005717343.1	KEGG: smd:Smed_5367 peptidoglycan glycosyltransferase; PFAM: Penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain
YP_005717344.1	KEGG: rhi:NGR_b02380 hypothetical protein; PFAM: SH3, type 3; SMART: SH3-like domain, bacterial
YP_005717345.1	TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate cyclase, predicted; KEGG: smd:Smed_5323 diguanylate cyclase; SMART: Diguanylate cyclase, predicted
YP_005717346.1	PFAM: ROK; Protein of unknown function DUF742; KEGG: ara:Arad_9050 transcriptional regulator protein
YP_005717347.1	PFAM: Bacterial extracellular solute-binding, family 1; KEGG: ara:Arad_9049 sugar ABC transporter
YP_005717348.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: ara:Arad_9048 sugar ABC transporter
YP_005717349.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: ret:RHE_CH02658 sugar ABC transporter, permease protein
YP_005717350.1	PFAM: ABC transporter-like; Transport-associated OB, type 2; KEGG: ara:Arad_9045 sugar ABC transporter; SMART: ATPase, AAA+ type, core
YP_005717351.1	KEGG: mlo:mlr6441 oxidoreductase; PFAM: NADP-dependent oxidoreductase domain; Oxidoreductase, N-terminal
YP_005717352.1	KEGG: smd:Smed_5877 streptomycin 3''-adenylyltransferase; PFAM: Nucleotidyl transferase domain
YP_005717353.1	PFAM: Glutathione S-transferase, N-terminal; KEGG: pol:Bpro_0079 glutathione S-transferase-like
YP_005717354.1	KEGG: atu:Atu4619 ATP-dependent DNA helicase; PFAM: DNA helicase, UvrD/REP type; SMART: Helix-hairpin-helix DNA-binding motif, class 1
YP_005717355.1	PFAM: Ion transport 2; KEGG: eli:ELI_00280 hypothetical protein
YP_005717356.1	KEGG: smd:Smed_5362 two component transcriptional regulator; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal
YP_005717357.1	KEGG: smd:Smed_5361 osmosensitive K+ channel signal transduction histidine kinase; PFAM: Signal transduction histidine kinase, osmosensitive K+ channel sensor, N-terminal; ATPase-like, ATP-binding domain; UspA; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; GAF
YP_005717358.1	TIGRFAM: Potassium transporting ATPase, C subunit; KEGG: smd:Smed_5360 potassium-transporting ATPase subunit C; PFAM: Potassium transporting ATPase, C subunit
YP_005717359.1	TIGRFAM: Potassium-transporting ATPase, B chain; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; KEGG: smd:Smed_5359 potassium-transporting ATPase subunit B; PFAM: ATPase, P-type, ATPase-associated domain; Haloacid dehalogenase-like hydrolase
YP_005717360.1	TIGRFAM: ATPase, K+ transporting, A subunit; KEGG: smd:Smed_5358 potassium-transporting ATPase subunit A; PFAM: ATPase, K+ transporting, A subunit
YP_005717361.1	KEGG: oan:Oant_3259 RhtX/FptX family siderophore transporter; TIGRFAM: Siderophore transporter, RhtX/FptX family; PFAM: Major facilitator superfamily MFS-1
YP_005717362.1	TIGRFAM: Diaminobutyrate-2-oxoglutarate transaminase; KEGG: ppu:PP_4223 diaminobutyrate--2-oxoglutarate aminotransferase; PFAM: Aminotransferase class-III
YP_005717363.1	KEGG: hje:HacjB3_15911 pyridoxal-dependent decarboxylase; PFAM: Pyridoxal phosphate-dependent decarboxylase
YP_005717364.1	PFAM: Aerobactin siderophore biosynthesis, IucA/IucC, N-terminal; FhuF/siderophore biosynthesis protein; KEGG: rxy:Rxyl_0410 IucA/IucC
YP_005717365.1	PFAM: Siderophore biosynthesis protein, conserved domain; KEGG: rxy:Rxyl_0409 hypothetical protein
YP_005717366.1	KEGG: hel:HELO_2824 L-lysine 6-monooxygenase (NADPH)
YP_005717367.1	PFAM: Aerobactin siderophore biosynthesis, IucA/IucC, N-terminal; FhuF/siderophore biosynthesis protein; KEGG: rxy:Rxyl_0407 IucA/IucC
YP_005717368.1	KEGG: oan:Oant_3261 helix-turn-helix domain-containing protein; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain
YP_005717369.1	KEGG: pag:PLES_50611 putative TonB-dependent receptor; TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug
YP_005717370.1	PFAM: Siderophore biosynthesis protein, conserved domain; KEGG: bbt:BBta_1092 putative acetylase
YP_005717371.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: smd:Smed_5891 LysR family transcriptional regulator
YP_005717372.1	KEGG: smd:Smed_5892 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR
YP_005717373.1	KEGG: xac:XAC3478 hypothetical protein
YP_005717374.1	PFAM: Uncharacterised protein family Atu4866; KEGG: smd:Smed_5893 hypothetical protein
YP_005717375.1	PFAM: Methyltransferase type 12; KEGG: nwi:Nwi_2149 hypothetical protein
YP_005717376.1	KEGG: smd:Smed_5356 putative xanthine dehydrogenase iron-sulfur-binding subunit; PFAM: [2Fe-2S]-binding; Ferredoxin
YP_005717377.1	KEGG: ara:Arad_7432 oxidoreductase, molybdopterin-binding subunit; PFAM: Molybdopterin dehydrogenase, FAD-binding; CO dehydrogenase flavoprotein, C-terminal
YP_005717378.1	KEGG: smd:Smed_5354 aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; PFAM: Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding; Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead
YP_005717379.1	KEGG: smd:Smed_5353 DNA polymerase IV; PFAM: DNA-repair protein, UmuC-like
YP_005717382.1	manually curated; PFAM: Adenylyl cyclase class-3/4/guanylyl cyclase; KEGG: smd:Smed_5352 putative adenylate/guanylate cyclase; SMART: Adenylyl cyclase class-3/4/guanylyl cyclase
YP_005717383.1	PFAM: Protein of unknown function DUF81; KEGG: smd:Smed_5363 hypothetical protein
YP_005717384.1	PFAM: Basic membrane lipoprotein; KEGG: smd:Smed_5338 basic membrane lipoprotein
YP_005717385.1	PFAM: Amidase; KEGG: smd:Smed_5337 amidase
YP_005717386.1	PFAM: ABC transporter-like; KEGG: smd:Smed_5336 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_005717387.1	PFAM: ABC transporter permease; KEGG: smd:Smed_5335 inner-membrane translocator
YP_005717388.1	PFAM: ABC transporter permease; KEGG: smd:Smed_5334 inner-membrane translocator
YP_005717389.1	KEGG: smd:Smed_5333 cytosine deaminase; PFAM: Amidohydrolase 3
YP_005717390.1	PFAM: Cupin 2, conserved barrel; KEGG: rec:RHECIAT_CH0002052 hypothetical protein
YP_005717391.1	PFAM: Major facilitator superfamily MFS-1; KEGG: smd:Smed_5332 major facilitator transporter
YP_005717392.1	TIGRFAM: Catalase-peroxidase haem; KEGG: smd:Smed_5331 catalase/peroxidase HPI; PFAM: Haem peroxidase, plant/fungal/bacterial
YP_005717393.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: smd:Smed_5722 LysR family transcriptional regulator
YP_005717394.1	PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: smd:Smed_5330 TetR family transcriptional regulator
YP_005717395.1	KEGG: smd:Smed_5329 alcohol dehydrogenase; PFAM: Alcohol dehydrogenase, C-terminal; Alcohol dehydrogenase GroES-like
YP_005717397.1	KEGG: smd:Smed_5328 ABC transporter related; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core
YP_005717398.1	PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: smd:Smed_5327 TetR family transcriptional regulator
YP_005717400.1	KEGG: rle:RL2737 putative organic hydroperoxide resistance protein; TIGRFAM: Peroxiredoxin, organic hydroperoxide resistance-related; PFAM: Peroxiredoxin, OsmC-like protein
YP_005717401.1	PFAM: Replication protein-C C-terminal; Replication protein C; KEGG: smd:Smed_5175 replication initiation protein RepC
YP_005717402.1	TIGRFAM: Plasmid partitioning protein, RepB; ParB-like partition protein; PFAM: ParB-like nuclease; RepB plasmid partition; KEGG: smd:Smed_5174 ParB-like partition protein; SMART: ParB-like nuclease
YP_005717403.1	KEGG: smd:Smed_5173 cobyrinic acid ac-diamide synthase; TIGRFAM: Plasmid partitioning protein, RepA; PFAM: Cobyrinic acid a,c-diamide synthase
YP_005717404.1	KEGG: sno:Snov_3504 formate dehydrogenase, alpha subunit; PFAM: Molybdopterin oxidoreductase; Molybdopterin oxidoreductase, Fe4S4 domain; Twin-arginine translocation pathway, signal sequence, bacterial/archaeal; Molydopterin dinucleotide-binding domain; manually curated; TIGRFAM: Formate dehydrogenase, alpha subunit, anaerobic; Twin-arginine translocation pathway, signal sequence; SMART: Molybdopterin oxidoreductase, Fe4S4 domain
YP_005717405.1	KEGG: pde:Pden_2828 formate dehydrogenase, beta subunit; TIGRFAM: Formate dehydrogenase, beta subunit; PFAM: Formate dehydrogenase, transmembrane
YP_005717406.1	TIGRFAM: Formate dehydrogenase, gamma subunit; KEGG: xau:Xaut_0660 formate dehydrogenase, gamma subunit
YP_005717407.1	TIGRFAM: Formate dehydrogenase accessory protein; HAMAP: Formate dehydrogenase accessory protein; KEGG: pde:Pden_2826 formate dehydrogenase accessory protein FdhE; PFAM: Formate dehydrogenase accessory protein
YP_005717408.1	KEGG: oan:Oant_2867 selenocysteine synthase; manually curated; TIGRFAM: L-seryl-tRNA selenium transferase; PFAM: Pyridoxal phosphate-dependent transferase; HAMAP: L-seryl-tRNA selenium transferase
YP_005717409.1	KEGG: azc:AZC_1154 Sel1 repeat-containing protein; PFAM: Sel1-like; SMART: Sel1-like
YP_005717410.1	KEGG: pde:Pden_2825 selenocysteine-specific translation elongation factor; TIGRFAM: Translation elongation factor, selenocysteine-specific; PFAM: Protein synthesis factor, GTP-binding; Translation elongation factor SelB, winged helix, type 3; Translation elongation factor SelB, winged helix, type 2; Translation elongation factor EFTu/EF1A, domain 2
YP_005717411.1	KEGG: rec:RHECIAT_CH0003321 hypothetical protein
YP_005717412.1	KEGG: smd:Smed_5307 hypothetical protein
YP_005717413.1	KEGG: smd:Smed_6040 hypothetical protein
YP_005717414.1	SMART: Signal transduction response regulator, receiver domain; KEGG: smd:Smed_4830 response regulator receiver protein
YP_005717416.1	KEGG: msl:Msil_3331 hypothetical protein
YP_005717417.1	KEGG: azo:azo0103 hypothetical protein; PFAM: Transglutaminase-like; SMART: Transglutaminase-like
YP_005717418.1	KEGG: pde:Pden_2724 hypothetical protein
YP_005717419.1	KEGG: pde:Pden_2723 selenophosphate synthetase; TIGRFAM: Selenide water dikinase; PFAM: AIR synthase-related protein, C-terminal; AIR synthase-related protein
YP_005717420.1	manually curated; KEGG: smd:Smed_5286 hypothetical protein
YP_005717421.1	PFAM: Peptidase M10B, serralysin, C-terminal; Peptidase M10, metallopeptidase; Haemolysin-type calcium-binding repeat; KEGG: rhi:NGR_b08100 possible protease; SMART: Peptidase, metallopeptidase
YP_005717422.1	KEGG: smd:Smed_5912 ABC transporter related; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core
YP_005717423.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: smd:Smed_5851 LysR family transcriptional regulator
YP_005717424.1	KEGG: smd:Smed_5850 alcohol dehydrogenase; PFAM: Alcohol dehydrogenase, C-terminal; Alcohol dehydrogenase GroES-like
YP_005717425.1	PFAM: Protein of unknown function DUF2277; KEGG: smd:Smed_5849 hypothetical protein
YP_005717426.1	KEGG: smd:Smed_5753 regulatory protein LacI; PFAM: HTH transcriptional regulator, LacI; Periplasmic binding protein/LacI transcriptional regulator; SMART: HTH transcriptional regulator, LacI
YP_005717427.1	PFAM: Oxidoreductase, N-terminal; KEGG: smd:Smed_5752 oxidoreductase domain-containing protein
YP_005717428.1	PFAM: Xylose isomerase, TIM barrel domain; KEGG: smd:Smed_5751 xylose isomerase domain-containing protein
YP_005717429.1	KEGG: smd:Smed_5750 hypothetical protein
YP_005717430.1	KEGG: smd:Smed_5749 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR
YP_005717431.1	KEGG: smd:Smed_5748 formyl-CoA transferase; PFAM: CoA-transferase family III
YP_005717432.1	KEGG: smd:Smed_5747 putative integral membrane protein
YP_005717433.1	PFAM: Crotonase, core; KEGG: smd:Smed_5746 enoyl-CoA hydratase/isomerase
YP_005717434.1	PFAM: ABC transporter permease; KEGG: smd:Smed_5745 monosaccharide-transporting ATPase
YP_005717435.1	PFAM: Periplasmic binding protein/LacI transcriptional regulator; KEGG: smd:Smed_5744 putative ABC transporter, periplasmic solute-binding protein
YP_005717436.1	PFAM: ABC transporter-like; KEGG: smd:Smed_5743 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_005717437.1	PFAM: Mandelate racemase/muconate lactonizing enzyme, C-terminal; Mandelate racemase/muconate lactonizing enzyme, N-terminal; KEGG: smd:Smed_5845 mandelate racemase/muconate lactonizing protein; SMART: Mandelate racemase/muconate lactonizing enzyme, C-terminal
YP_005717438.1	PFAM: N-acylglucosamine 2-epimerase; KEGG: smd:Smed_5844 N-acylglucosamine 2-epimerase
YP_005717439.1	KEGG: smd:Smed_5843 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR
YP_005717440.1	PFAM: SMP-30/Gluconolaconase/LRE-like region; KEGG: smd:Smed_5842 SMP-30/gluconolaconase/LRE domain-containing protein
YP_005717441.1	KEGG: smd:Smed_5841 GntR family transcriptional regulator; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: HTH transcriptional regulator, GntR; GntR, C-terminal
YP_005717442.1	KEGG: smd:Smed_5838 GntR domain-containing protein; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: GntR, C-terminal; HTH transcriptional regulator, GntR
YP_005717443.1	PFAM: Mandelate racemase/muconate lactonizing enzyme, N-terminal; Mandelate racemase/muconate lactonizing enzyme, C-terminal; KEGG: smd:Smed_5837 mandelate racemase/muconate lactonizing protein; SMART: Mandelate racemase/muconate lactonizing enzyme, C-terminal
YP_005717444.1	KEGG: smd:Smed_5836 GntR family transcriptional regulator; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: HTH transcriptional regulator, GntR; GntR, C-terminal
YP_005717445.1	KEGG: smd:Smed_5835 putative ABC transporter, periplasmic solute-binding protein
YP_005717446.1	PFAM: ABC transporter permease; KEGG: smd:Smed_5834 monosaccharide-transporting ATPase
YP_005717447.1	PFAM: ABC transporter-like; KEGG: smd:Smed_5833 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_005717448.1	KEGG: smd:Smed_5832 3-ketoacyl-(acyl-carrier-protein) reductase; PFAM: Short-chain dehydrogenase/reductase SDR
YP_005717449.1	PFAM: Aldose 1-epimerase; KEGG: smd:Smed_5831 aldose 1-epimerase
YP_005717450.1	manually curated; PFAM: Periplasmic binding protein/LacI transcriptional regulator; HTH transcriptional regulator, LacI; KEGG: oan:Oant_3749 periplasmic binding protein/LacI transcriptional regulator; SMART: HTH transcriptional regulator, LacI
YP_005717451.1	KEGG: oan:Oant_3748 polar amino acid ABC transporter, inner membrane subunit; TIGRFAM: Amino acid ABC transporter, permease protein, 3-TM domain, His/Glu/Gln/Arg/opine family; PFAM: Binding-protein-dependent transport systems inner membrane component
YP_005717452.1	KEGG: oan:Oant_3747 polar amino acid ABC transporter, inner membrane subunit; TIGRFAM: Amino acid ABC transporter, permease protein, 3-TM domain, His/Glu/Gln/Arg/opine family; PFAM: Binding-protein-dependent transport systems inner membrane component
YP_005717453.1	KEGG: oan:Oant_3746 extracellular solute-binding protein; PFAM: Extracellular solute-binding protein, family 3; SMART: Extracellular solute-binding protein, family 3
YP_005717454.1	PFAM: ABC transporter-like; KEGG: oan:Oant_3745 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_005717455.1	KEGG: oan:Oant_3744 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
YP_005717456.1	PFAM: Ethyl tert-butyl ether degradation EthD; KEGG: oan:Oant_3743 hypothetical protein
YP_005717457.1	PFAM: Endoribonuclease L-PSP; KEGG: ret:RHE_CH00602 translation initiation inhibitor protein
YP_005717458.1	PFAM: BA14K-like; KEGG: rhi:NGR_b10950 hypothetical protein
YP_005717459.1	KEGG: smd:Smed_5171 aminotransferase class IV; PFAM: Aminotransferase, class IV
YP_005717460.1	PFAM: Peptidase S58, DmpA; KEGG: smd:Smed_5170 peptidase S58 DmpA
YP_005717461.1	PFAM: HTH transcriptional regulator, LysR; LysR, substrate-binding; KEGG: smd:Smed_5169 LysR family transcriptional regulator
YP_005717462.1	PFAM: Amidohydrolase 3; KEGG: smd:Smed_5168 amidohydrolase 3
YP_005717463.1	PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: smd:Smed_5167 4-phytase
YP_005717464.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_5166 binding-protein-dependent transport systems inner membrane component
YP_005717465.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_5165 binding-protein-dependent transport systems inner membrane component
YP_005717466.1	PFAM: ABC transporter-like; Oligopeptide/dipeptide ABC transporter, C-terminal; KEGG: smd:Smed_5164 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_005717467.1	PFAM: ABC transporter-like; Oligopeptide/dipeptide ABC transporter, C-terminal; KEGG: smd:Smed_5163 oligopeptide/dipeptide ABC transporter, ATPase subunit; SMART: ATPase, AAA+ type, core
YP_005717468.1	KEGG: rlg:Rleg_0878 glutathione-dependent formaldehyde-activating GFA; manually curated; PFAM: Glutathione-dependent formaldehyde-activating, GFA
YP_005717469.1	TIGRFAM: PAS; PFAM: Signal transduction histidine kinase, HWE region; PAS fold; PAS fold-4; KEGG: mes:Meso_0620 signal transduction histidine kinase; SMART: Signal transduction histidine kinase, HWE region; PAC motif; PAS
YP_005717470.1	KEGG: rlg:Rleg_2608 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain
YP_005717471.1	KEGG: smd:Smed_5146 chaperone DnaJ domain-containing protein; PFAM: Chaperone DnaJ, C-terminal; Heat shock protein DnaJ, N-terminal; SMART: Heat shock protein DnaJ, N-terminal
YP_005717472.1	KEGG: smd:Smed_5145 hypothetical protein
YP_005717473.1	KEGG: ret:RHE_PE00171 hypothetical protein
YP_005717474.1	KEGG: rlg:Rleg_1032 hypothetical protein
YP_005717475.1	KEGG: smd:Smed_4129 hypothetical protein
YP_005717476.1	KEGG: rlg:Rleg_1045 hypothetical protein
YP_005717477.1	TIGRFAM: Chaperonin Cpn60; HAMAP: Chaperonin Cpn60; KEGG: smd:Smed_4130 chaperonin GroEL; PFAM: Chaperonin Cpn60/TCP-1
YP_005717478.1	HAMAP: Chaperonin Cpn10; PFAM: Chaperonin Cpn10; KEGG: ara:Arad_8745 co-chaperonin GroES; SMART: Chaperonin Cpn10
YP_005717479.1	KEGG: smd:Smed_5162 cold-shock DNA-binding domain-containing protein; PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein
YP_005717480.1	KEGG: smd:Smed_5161 hypothetical protein
YP_005717481.1	KEGG: smd:Smed_5160 fatty acid desaturase; manually curated; PFAM: Fatty acid desaturase, type 1
YP_005717482.1	KEGG: smd:Smed_5159 hypothetical protein
YP_005717483.1	KEGG: smd:Smed_5156 hypothetical protein
YP_005717484.1	KEGG: smd:Smed_5155 hypothetical protein
YP_005717485.1	PFAM: Uncharacterised protein family UPF0118; KEGG: smd:Smed_5154 hypothetical protein
YP_005717486.1	TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; CHASE4; KEGG: smd:Smed_5153 diguanylate cyclase/phosphodiesterase; SMART: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted
YP_005717487.1	PFAM: Peptidase S8/S53, subtilisin/kexin/sedolisin; KEGG: smd:Smed_5144 peptidase S8/S53 subtilisin kexin sedolisin
YP_005717488.1	KEGG: smd:Smed_5143 ECF subfamily RNA polymerase sigma-24 factor; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2
YP_005717489.1	KEGG: smd:Smed_5142 putative transmembrane anti-sigma factor
YP_005717490.1	KEGG: mst:Msp_0474 hypothetical protein
YP_005717491.1	KEGG: smd:Smed_5140 hypothetical protein
YP_005717492.1	PFAM: Transcription elongation factor, GreA/GreB, C-terminal; KEGG: smd:Smed_5139 transcription elongation factor regulatory protein
YP_005717493.1	KEGG: smd:Smed_5138 malonyl-CoA synthase; PFAM: AMP-dependent synthetase/ligase
YP_005717494.1	KEGG: smd:Smed_5137 malonyl-CoA decarboxylase; PFAM: Malonyl-CoA decarboxylase
YP_005717495.1	KEGG: smd:Smed_5136 TRAP dicarboxylate transporter, DctM subunit; TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit
YP_005717496.1	PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: smd:Smed_5135 tripartite ATP-independent periplasmic transporter DctQ
YP_005717497.1	PFAM: Extracellular solute-binding protein, family 7, bacteria; KEGG: smd:Smed_5134 TRAP dicarboxylate transporter-DctP subunit
YP_005717498.1	KEGG: smd:Smed_5133 GntR family transcriptional regulator; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: GntR, C-terminal; HTH transcriptional regulator, GntR
YP_005717499.1	PFAM: Type II/III secretion system; Transport-associated; KEGG: smd:Smed_5132 type II and III secretion system protein
YP_005717500.1	KEGG: smd:Smed_5131 hypothetical protein
YP_005717501.1	PFAM: Tetratricopeptide TPR-1; KEGG: smd:Smed_5130 TPR repeat-containing protein
YP_005717502.1	KEGG: bcv:Bcav_3652 methyltransferase type 11; PFAM: Methyltransferase type 11; SMART: Ribosomal RNA adenine methylase transferase, N-terminal
YP_005717503.1	PFAM: Methyltransferase type 11; KEGG: rec:RHECIAT_PC0000208 putative methyltransferase protein
YP_005717504.1	KEGG: rhi:NGR_c14210 hypothetical protein
YP_005717505.1	KEGG: smd:Smed_5283 hypothetical protein; TIGRFAM: Polyphosphate kinase 2, PA0141; PFAM: Polyphosphate kinase-2-related
YP_005717506.1	PFAM: Mechanosensitive ion channel MscS; KEGG: smd:Smed_5647 MscS mechanosensitive ion channel
YP_005717507.1	PFAM: GYD; KEGG: rle:RL2480 hypothetical protein
YP_005717508.1	manually curated; KEGG: ret:RHE_PE00177 adenylate cyclase protein
YP_005717509.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: atu:Atu6055 LysR family transcriptional regulator
YP_005717510.1	KEGG: ara:Arad_14200 phenazine biosynthetic protein; TIGRFAM: Phenazine biosynthesis PhzC/PhzF protein; PFAM: Phenazine biosynthesis PhzC/PhzF protein
YP_005717511.1	KEGG: rlt:Rleg2_5433 cold-shock DNA-binding domain-containing protein; PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein
YP_005717512.1	PFAM: Major facilitator superfamily MFS-1; KEGG: smd:Smed_5148 major facilitator transporter
YP_005717513.1	KEGG: smd:Smed_5297 short chain dehydrogenase; PFAM: Short-chain dehydrogenase/reductase SDR
YP_005717514.1	KEGG: rpb:RPB_2764 hypothetical protein
YP_005717515.1	PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: smd:Smed_5846 TetR family transcriptional regulator
YP_005717516.1	PFAM: Activator of Hsp90 ATPase homologue 1-like; KEGG: ote:Oter_1306 activator of HSP90 ATPase 1 family protein
YP_005717517.1	KEGG: lbf:LBF_3231 ArsR family transcriptional regulator; manually curated; SMART: HTH transcriptional regulator, ArsR
YP_005717518.1	KEGG: rlg:Rleg_4647 gluconolactonase; PFAM: SMP-30/Gluconolaconase/LRE-like region
YP_005717519.1	PFAM: ABC transporter permease; KEGG: rlg:Rleg_4646 inner-membrane translocator
YP_005717520.1	PFAM: ABC transporter permease; KEGG: rle:pRL120286 putative permease component of ABC transporter
YP_005717521.1	PFAM: ABC transporter-like; KEGG: rle:pRL120285 putative ATP-binding component of ABC transporter; SMART: ATPase, AAA+ type, core
YP_005717522.1	KEGG: rle:pRL120284 putative ABC transporter component
YP_005717523.1	KEGG: rle:pRL120283 putative two-component sensor histidine kinase transcriptional regulatory protein; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; GAF
YP_005717524.1	KEGG: rlg:Rleg_5411 two component transcriptional regulator, LuxR family; PFAM: Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain
YP_005717525.1	KEGG: smd:Smed_5213 hypothetical protein
YP_005717526.1	KEGG: smd:Smed_1868 hypothetical protein
YP_005717527.1	HAMAP: 5-keto 4-deoxyuronate isomerase; KEGG: ipo:Ilyop_2926 4-deoxy-L-threo-5-hexulose uronate isomerase; PFAM: KduI/IolB isomerase
YP_005717528.1	PFAM: ABC transporter-like; KEGG: smd:Smed_5243 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_005717529.1	PFAM: ABC transporter permease; KEGG: smd:Smed_5242 monosaccharide-transporting ATPase
YP_005717530.1	PFAM: Periplasmic binding protein/LacI transcriptional regulator; KEGG: smd:Smed_5241 periplasmic binding protein/LacI transcriptional regulator
YP_005717531.1	PFAM: Aldehyde dehydrogenase domain; KEGG: smd:Smed_5240 aldehyde dehydrogenase
YP_005717532.1	KEGG: smd:Smed_5239 GntR family transcriptional regulator; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: HTH transcriptional regulator, GntR; GntR, C-terminal
YP_005717533.1	PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: bpt:Bpet2251 TetR family transcriptional regulator
YP_005717534.1	PFAM: Major facilitator superfamily MFS-1; KEGG: avn:Avin_35770 major facilitator superfamily transporter
YP_005717535.1	KEGG: rhi:NGR_c27510 putative membrane-bound dehydrogenase oxidoreductase protein
YP_005717536.1	PFAM: Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal; Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain; KEGG: hdn:Hden_0531 Glu/Leu/Phe/Val dehydrogenase; SMART: Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal
YP_005717537.1	PFAM: Transcription elongation factor, GreA/GreB, C-terminal; KEGG: xau:Xaut_2929 nucleoside diphosphate kinase regulator
YP_005717538.1	KEGG: mes:Meso_2203 GreA/GreB family elongation factor
YP_005717539.1	TIGRFAM: Alpha,alpha-trehalose-phosphate synthase; KEGG: smd:Smed_5911 alpha,alpha-trehalose-phosphate synthase (UDP-forming); PFAM: Glycosyl transferase, family 20
YP_005717540.1	KEGG: smd:Smed_2488 dihydroxy-acid dehydratase; PFAM: Dihydroxy-acid/6-phosphogluconate dehydratase
YP_005717541.1	KEGG: smd:Smed_2487 2-hydroxy-3-oxopropionate reductase; PFAM: 6-phosphogluconate dehydrogenase, NAD-binding
YP_005717542.1	PFAM: NAD-dependent epimerase/dehydratase; KEGG: smd:Smed_2486 NAD-dependent epimerase/dehydratase
YP_005717543.1	KEGG: smd:Smed_2485 FAD linked oxidase domain-containing protein; PFAM: FAD linked oxidase, N-terminal; FAD-linked oxidase, C-terminal
YP_005717544.1	KEGG: smd:Smed_2484 GntR domain-containing protein; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: GntR, C-terminal; HTH transcriptional regulator, GntR
YP_005717545.1	PFAM: Fumarylacetoacetase, C-terminal-like; KEGG: smd:Smed_2483 hypothetical protein
YP_005717546.1	PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: smd:Smed_2482 tripartite ATP-independent periplasmic transporter DctQ
YP_005717547.1	KEGG: smd:Smed_2481 TRAP dicarboxylate transporter, DctM subunit; TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit
YP_005717548.1	KEGG: smd:Smed_2480 TRAP dicarboxylate transporter, DctP subunit; TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: Extracellular solute-binding protein, family 7, bacteria
YP_005717549.1	PFAM: Protein of unknown function DUF2161; KEGG: rhi:NGR_b02320 hypothetical protein
YP_005717550.1	PFAM: Exonuclease, RNase T/DNA polymerase III; KEGG: smd:Smed_5270 DNA polymerase III subunit epsilon
YP_005717551.1	KEGG: smd:Smed_5258 hypothetical protein
YP_005717552.1	KEGG: smd:Smed_5259 aldehyde dehydrogenase; PFAM: Aldehyde dehydrogenase domain
YP_005717553.1	KEGG: smd:Smed_5260 alcohol dehydrogenase; PFAM: Alcohol dehydrogenase, iron-type
YP_005717554.1	KEGG: smd:Smed_5261 malate/L-lactate dehydrogenase; PFAM: Malate/L-lactate dehydrogenase
YP_005717555.1	KEGG: smd:Smed_5262 GntR family transcriptional regulator; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: GntR, C-terminal; HTH transcriptional regulator, GntR
YP_005717556.1	PFAM: ABC transporter-like; KEGG: smd:Smed_5263 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_005717557.1	PFAM: ABC transporter permease; KEGG: smd:Smed_5264 monosaccharide-transporting ATPase
YP_005717558.1	KEGG: smd:Smed_5265 putative ABC transporter, periplasmic solute-binding protein
YP_005717559.1	KEGG: smd:Smed_5266 PfpI family intracellular peptidase; TIGRFAM: Peptidase C56, PfpI; PFAM: ThiJ/PfpI
YP_005717560.1	PFAM: Uncharacterised conserved protein UCP033199; KEGG: ret:RHE_CH01058 hypothetical protein
YP_005717561.1	PFAM: Methyltransferase type 11; KEGG: rhi:NGR_b02960 probable methyltransferase
YP_005717562.1	PFAM: Glutaredoxin; Methylamine utilisation MauE; KEGG: rhi:NGR_c22270 hypothetical protein
YP_005717563.1	KEGG: rhi:NGR_c22280 putative transcriptional regulator, MerR family; PFAM: Transcription regulator MerR, DNA binding; HTH transcriptional regulator, MerR; SMART: HTH transcriptional regulator, MerR
YP_005717564.1	KEGG: smd:Smed_5252 hypothetical protein; TIGRFAM: Conserved hypothetical protein CHP02588; PFAM: Conserved hypothetical protein CHP02588
YP_005717565.1	manually curated; KEGG: ret:RHE_PA00059 insertion sequence transposase protein
YP_005717566.1	manually curated; KEGG: smd:Smed_5254 hypothetical protein
YP_005717568.1	KEGG: smd:Smed_4830 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain
YP_005717569.1	KEGG: rlt:Rleg2_5123 PilT protein domain-containing protein; manually curated; PFAM: PilT protein, N-terminal
YP_005717570.1	PFAM: Protein of unknown function DUF2191; KEGG: rhi:NGR_b04670 hypothetical protein
YP_005717571.1	manually curated; TIGRFAM: Conserved hypothetical protein CHP02444; KEGG: pde:Pden_4933 hypothetical protein; PFAM: Conserved hypothetical protein CHP02444
YP_005717572.1	KEGG: pde:Pden_4940 histidine utilization repressor; PFAM: UbiC transcription regulator-associated; HTH transcriptional regulator, GntR; SMART: UbiC transcription regulator-associated; HTH transcriptional regulator, DeoR N-terminal; HTH transcriptional regulator, GntR
YP_005717573.1	PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; BFD-like [2Fe-2S]-binding domain; KEGG: pde:Pden_4934 BFD/(2Fe-2S)-binding domain-containing protein
YP_005717574.1	KEGG: pde:Pden_4935 hypothetical protein
YP_005717575.1	PFAM: FAD dependent oxidoreductase; KEGG: pde:Pden_4936 FAD dependent oxidoreductase
YP_005717576.1	KEGG: pde:Pden_4937 hypothetical protein
YP_005717577.1	KEGG: pde:Pden_4938 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; TIGRFAM: Phenylacrylic acid decarboxylase; PFAM: Flavoprotein
YP_005717578.1	KEGG: oan:Oant_4699 UbiD family decarboxylase; TIGRFAM: Carboxylyase-related; PFAM: Carboxylyase-related
YP_005717579.1	KEGG: pde:Pden_4940 histidine utilization repressor; PFAM: UbiC transcription regulator-associated; HTH transcriptional regulator, GntR; SMART: UbiC transcription regulator-associated; HTH transcriptional regulator, GntR
YP_005717580.1	KEGG: pde:Pden_4941 betaine-aldehyde dehydrogenase; PFAM: Aldehyde dehydrogenase domain
YP_005717581.1	KEGG: pde:Pden_4942 thiamine pyrophosphate protein; PFAM: Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain; Thiamine pyrophosphate enzyme, C-terminal TPP-binding; Thiamine pyrophosphate enzyme, central domain
YP_005717582.1	PFAM: Bacterial extracellular solute-binding, family 1; KEGG: pde:Pden_4943 extracellular solute-binding protein
YP_005717583.1	PFAM: ABC transporter-like; Transport-associated OB, type 2; KEGG: pde:Pden_4944 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_005717584.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: pde:Pden_4945 binding-protein-dependent transport systems inner membrane component
YP_005717585.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: pde:Pden_4946 binding-protein-dependent transport systems inner membrane component
YP_005717586.1	PFAM: Endoribonuclease L-PSP; KEGG: oan:Oant_4692 endoribonuclease L-PSP
YP_005717587.1	KEGG: oan:Oant_4696 extracellular solute-binding protein; PFAM: Extracellular solute-binding protein, family 3; SMART: Extracellular solute-binding protein, family 3
YP_005717588.1	KEGG: oan:Oant_4695 polar amino acid ABC transporter, inner membrane subunit; TIGRFAM: Amino acid ABC transporter, permease protein, 3-TM domain, His/Glu/Gln/Arg/opine family; PFAM: Binding-protein-dependent transport systems inner membrane component
YP_005717589.1	PFAM: ABC transporter-like; KEGG: oan:Oant_4694 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_005717590.1	PFAM: FAD dependent oxidoreductase; KEGG: oan:Oant_4693 FAD dependent oxidoreductase
YP_005717591.1	PFAM: Protein of unknown function DUF1326; KEGG: rhi:NGR_b04680 hypothetical protein
YP_005717593.1	PFAM: Lipocalin-like; KEGG: mlo:mlr4717 outer membrane lipoprotein
YP_005717594.1	KEGG: smd:Smed_1887 hypothetical protein
YP_005717595.1	KEGG: smd:Smed_1880 hypothetical protein
YP_005717596.1	KEGG: smd:Smed_1879 hypothetical protein
YP_005717597.1	KEGG: smd:Smed_1878 hypothetical protein
YP_005717598.1	KEGG: smd:Smed_1877 hypothetical protein
YP_005717599.1	manually curated; KEGG: smd:Smed_5213 hypothetical protein
YP_005717600.1	KEGG: smd:Smed_1868 hypothetical protein
YP_005717601.1	manually curated; KEGG: smd:Smed_4778 hypothetical protein
YP_005717602.1	PFAM: Protein of unknown function DUF1515; KEGG: rhi:NGR_c18800 hypothetical protein
YP_005717604.1	PFAM: Protein of unknown function DUF3606; KEGG: smd:Smed_1687 hypothetical protein
YP_005717605.1	KEGG: rhi:NGR_c11520 hypothetical protein
YP_005717606.1	KEGG: smd:Smed_1307 hypothetical protein
YP_005717607.1	KEGG: smd:Smed_1305 DNA polymerase LigD ligase region; TIGRFAM: DNA polymerase LigD, ligase domain; PFAM: DNA ligase, ATP-dependent, central; DNA ligase, ATP-dependent, C-terminal
YP_005717608.1	KEGG: smd:Smed_4837 hypothetical protein
YP_005717609.1	KEGG: smd:Smed_4838 hypothetical protein
YP_005717611.1	KEGG: avi:Avi_9044 hypothetical protein
YP_005717612.1	KEGG: smd:Smed_5684 glycosyl transferase group 1
YP_005717613.1	TIGRFAM: UDP-galactopyranose mutase; KEGG: smd:Smed_5685 UDP-galactopyranose mutase; PFAM: UDP-galactopyranose mutase, C-terminal
YP_005717614.1	PFAM: Glycosyl transferase, group 1; Oxidoreductase, N-terminal; Alcohol dehydrogenase, C-terminal; Oxidoreductase, C-terminal; KEGG: smd:Smed_5686 glycosyl transferase group 1
YP_005717615.1	PFAM: Glycosyl transferase, group 1; KEGG: smd:Smed_5687 glycosyl transferase group 1
YP_005717616.1	KEGG: smd:Smed_5245 arginase/agmatinase/formiminoglutamase
YP_005717617.1	KEGG: mes:Meso_3689 AraC family transcriptional regulator; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain
YP_005717619.1	PFAM: Hep/Hag; KEGG: ara:Arad_8991 rhizobiocin/RTX toxin and hemolysin-type calcium binding protein
YP_005717620.1	PFAM: YadA-like, C-terminal; Haemagluttinin motif; Hep/Hag; KEGG: ara:Arad_8991 rhizobiocin/RTX toxin and hemolysin-type calcium binding protein
YP_005717621.1	PFAM: Invasion associated locus B; KEGG: ara:Arad_8992 hypothetical protein
YP_005717622.1	KEGG: ara:Arad_8993 hypothetical protein
YP_005717623.1	KEGG: ara:Arad_8994 hypothetical protein
YP_005717624.1	PFAM: Invasion associated locus B; Protein of unknown function DUF1176; KEGG: mlo:mll2844 invasion-like protein
YP_005717625.1	KEGG: bbt:BBta_1746 carbon monoxide dehydrogenase, CoxC signalling protein; PFAM: LytTr, DNA-binding domain; MHYT; SMART: LytTr, DNA-binding domain
YP_005717626.1	PFAM: Diguanylate phosphodiesterase, EAL domain; KEGG: smd:Smed_4347 diguanylate phosphodiesterase
YP_005717627.1	PFAM: Bacterial TniB; KEGG: mes:Meso_4603 TniB
YP_005717628.1	KEGG: smd:Smed_5172 hemolysin-type calcium-binding region
YP_005717629.1	KEGG: xau:Xaut_1237 hypothetical protein
YP_005717630.1	KEGG: axy:AXYL_03004 NAD dependent epimerase/dehydratase family protein 5
YP_005717631.1	KEGG: aex:Astex_0070 transposase mutator type; manually curated; PFAM: Transposase, mutator type
YP_005717632.1	PFAM: Filamentation induced by cAMP/death on curing-related; KEGG: rhi:NGR_b14600 filamentation induced by cAMP protein Fic-like hypothetical protein
YP_005717633.1	KEGG: rhi:NGR_b20780 possible sulfite oxidase; PFAM: Oxidoreductase, molybdopterin-binding domain; Moybdenum cofactor oxidoreductase, dimerisation
YP_005717634.1	KEGG: smd:Smed_5648 putative nitrilotriacetate monooxygenase component A; TIGRFAM: Nitrilotriacetate monooxygenase component A/pristinamycin IIA synthase subunit A; PFAM: Luciferase-like, subgroup
YP_005717635.1	PFAM: NAD-dependent epimerase/dehydratase; KEGG: smd:Smed_5649 hypothetical protein
YP_005717636.1	PFAM: Monooxygenase, FAD-binding; KEGG: smd:Smed_5650 monooxygenase FAD-binding
YP_005717637.1	KEGG: smd:Smed_5651 NmrA family protein
YP_005717638.1	KEGG: smd:Smed_5652 hypothetical protein
YP_005717639.1	PFAM: Acyl-CoA dehydrogenase, type 2, C-terminal; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA dehydrogenase, N-terminal; KEGG: smd:Smed_5653 acyl-CoA dehydrogenase type 2
YP_005717640.1	KEGG: smd:Smed_5654 hypothetical protein
YP_005717641.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_5655 binding-protein-dependent transport systems inner membrane component
YP_005717642.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_5656 binding-protein-dependent transport systems inner membrane component
YP_005717643.1	SMART: ATPase, AAA+ type, core; TIGRFAM: Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal; KEGG: smd:Smed_5657 oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter-like; Oligopeptide/dipeptide ABC transporter, C-terminal
YP_005717644.1	SMART: ATPase, AAA+ type, core; TIGRFAM: Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal; KEGG: smd:Smed_5658 oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter-like; Oligopeptide/dipeptide ABC transporter, C-terminal
YP_005717645.1	PFAM: NADP-dependent oxidoreductase domain; KEGG: smd:Smed_5659 aldo/keto reductase
YP_005717646.1	PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: smd:Smed_5662 extracellular solute-binding protein
YP_005717647.1	PFAM: Acyl-CoA dehydrogenase, type 2, C-terminal; KEGG: smd:Smed_5663 acyl-CoA dehydrogenase type 2
YP_005717648.1	PFAM: CsbD-like; KEGG: atu:Atu0782 hypothetical protein
YP_005717649.1	KEGG: rhi:NGR_b14530 probable ABC transporter, sulfate-binding protein; TIGRFAM: Thiosulphate-binding protein; PFAM: Bacterial extracellular solute-binding, family 1
YP_005717650.1	SMART: ATPase, AAA+ type, core; TIGRFAM: Sulphate transport system permease protein 1; KEGG: rhi:NGR_b11690 sulfate ABC transporter, ATP-binding protein; PFAM: ABC transporter-like
YP_005717651.1	KEGG: smd:Smed_5755 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain
YP_005717652.1	KEGG: smd:Smed_5756 signal transduction histidine kinase; PFAM: Signal transduction histidine kinase, HWE region; SMART: Signal transduction histidine kinase, HWE region
YP_005717653.1	KEGG: smd:Smed_5757 putative circadian clock protein, KaiC; SMART: ATPase, AAA+ type, core
YP_005717654.1	PFAM: Extracellular ligand-binding receptor; KEGG: rhi:NGR_b15300 probable amino acid ABC transporter, substrate-binding protein
YP_005717655.1	KEGG: rhi:NGR_b15310 probable adenylate class-3/4/guanylyl cyclase; PFAM: Adenylyl cyclase class-3/4/guanylyl cyclase; HAMP linker domain; SMART: HAMP linker domain; Adenylyl cyclase class-3/4/guanylyl cyclase
YP_005717656.1	SMART: ATPase, AAA+ type, core; TIGRFAM: Nitrate transport ATP-binding subunit C/D; KEGG: rhi:NGR_b15180 nitrate transporter ATPase component NrtC; PFAM: ABC transporter-like
YP_005717657.1	KEGG: rhi:NGR_b15170 nitrate transport permease protein NrtB; TIGRFAM: Nitrate transport permease; PFAM: Binding-protein-dependent transport systems inner membrane component
YP_005717658.1	KEGG: rhi:NGR_b15160 ABC transporter nitrate-binding protein NrtA
YP_005717659.1	KEGG: smd:Smed_1296 hypothetical protein
YP_005717660.1	KEGG: smd:Smed_1429 putative signal peptide protein
YP_005717661.1	PFAM: Methyltransferase type 11; KEGG: smd:Smed_5724 methyltransferase type 11
YP_005717662.1	KEGG: rhi:NGR_c21790 putative transcriptional regulator, AsnC/Lrp family; PFAM: Transcription regulator AsnC-type, C-terminal; SMART: Transcription regulator AsnC-type
YP_005717663.1	KEGG: pau:PA14_07250 hypothetical protein
YP_005717664.1	KEGG: azl:AZL_d04270 formate dehydrogenase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
YP_005717665.1	KEGG: mno:Mnod_7898 addiction module toxin, RelE/StbE family; TIGRFAM: Addiction module toxin, RelE/StbE; PFAM: Plasmid stabilisation system
YP_005717666.1	KEGG: mno:Mnod_7897 addiction module antitoxin, RelB/DinJ family; TIGRFAM: RelB antitoxin; PFAM: RelB antitoxin
YP_005717667.1	PFAM: Activator of Hsp90 ATPase homologue 1-like; KEGG: bbe:BBR47_49670 hypothetical protein
YP_005717668.1	KEGG: mes:Meso_1501 transcriptional regulator; PFAM: HTH transcriptional regulator, AraC; ThiJ/PfpI; SMART: Helix-turn-helix, AraC type, DNA binding domain
YP_005717669.1	KEGG: bge:BC1002_5976 glutathione S-transferase domain protein
YP_005717670.1	KEGG: oan:Oant_3355 hypothetical protein
YP_005717671.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: psl:Psta_3107 glyoxalase/bleomycin resistance protein/dioxygenase
YP_005717672.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: smd:Smed_0839 LysR family transcriptional regulator
YP_005717673.1	PFAM: Antibiotic biosynthesis monooxygenase; KEGG: smd:Smed_0840 antibiotic biosynthesis monooxygenase
YP_005717674.1	PFAM: Carboxymuconolactone decarboxylase; KEGG: smd:Smed_0843 carboxymuconolactone decarboxylase
YP_005717675.1	PFAM: Uncharacterised conserved protein UCP028498; KEGG: smd:Smed_0844 hypothetical protein
YP_005717676.1	KEGG: rle:RL2356 putative aldo/keto reductase protein; PFAM: NADP-dependent oxidoreductase domain
YP_005717677.1	KEGG: smd:Smed_0846 glucose sorbosone dehydrogenase
YP_005717678.1	PFAM: Cupin 2, conserved barrel; KEGG: smd:Smed_0847 cupin 2 domain-containing protein
YP_005717679.1	PFAM: Adenylyl cyclase class-3/4/guanylyl cyclase; TolB, N-terminal; KEGG: smd:Smed_5448 adenylyl cyclase class-3/4/guanylyl cyclase; SMART: Adenylyl cyclase class-3/4/guanylyl cyclase
YP_005717680.1	KEGG: smd:Smed_5449 alpha/beta hydrolase fold; PFAM: Alpha/beta hydrolase fold-1
YP_005717681.1	PFAM: Adenylyl cyclase class-3/4/guanylyl cyclase; KEGG: rhi:NGR_b08450 probable adenylate class-3/4/guanylyl cyclase; SMART: Adenylyl cyclase class-3/4/guanylyl cyclase
YP_005717682.1	PFAM: Adenylyl cyclase class-3/4/guanylyl cyclase; KEGG: rhi:NGR_b00310 probable adenylate class-3/4/guanylyl cyclase; SMART: Adenylyl cyclase class-3/4/guanylyl cyclase
YP_005717683.1	KEGG: atu:Atu8099 hypothetical protein
YP_005717684.1	KEGG: rhi:NGR_b15850 metallo-beta-lactamase superfamily protein; PFAM: Beta-lactamase-like; SMART: Beta-lactamase-like
YP_005717685.1	PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: rhi:NGR_b15840 probable short-chain dehydrogenase
YP_005717686.1	KEGG: rec:RHECIAT_PA0000216 hypothetical protein
YP_005717687.1	KEGG: rhi:NGR_b15830 non-heme chloroperoxidase; PFAM: Alpha/beta hydrolase fold-1
YP_005717688.1	KEGG: rhi:NGR_b15820 putative transport protein
YP_005717689.1	manually curated; PFAM: Signal transduction response regulator, C-terminal; KEGG: rhi:NGR_b15810 putative transcriptional regulator; SMART: Signal transduction response regulator, C-terminal
YP_005717690.1	KEGG: rle:RL1867 hypothetical protein
YP_005717692.1	KEGG: smd:Smed_1683 sterile alpha motif-containing protein
YP_005717693.1	KEGG: smd:Smed_1681 alpha/beta hydrolase fold; PFAM: Alpha/beta hydrolase fold-1
YP_005717694.1	PFAM: Transposase, mutator type; KEGG: aex:Astex_0070 transposase mutator type
YP_005717695.1	KEGG: mes:Meso_3912 hypothetical protein
YP_005717696.1	PFAM: Dienelactone hydrolase; KEGG: ade:Adeh_3213 hypothetical protein
YP_005717697.1	PFAM: Carboxymuconolactone decarboxylase; KEGG: rlg:Rleg_2469 carboxymuconolactone decarboxylase
YP_005717698.1	PFAM: Cupin 2, conserved barrel; KEGG: avn:Avin_32560 conserved hypothetical cupin family protein
YP_005717699.1	KEGG: ara:Arad_9011 hypothetical protein
YP_005717700.1	KEGG: ara:Arad_9013 hypothetical protein
YP_005717701.1	KEGG: bja:bll5647 putative adenylate cyclase; PFAM: Adenylyl cyclase class-3/4/guanylyl cyclase; SMART: Adenylyl cyclase class-3/4/guanylyl cyclase
YP_005717702.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: mes:Meso_3905 LysR family transcriptional regulator
YP_005717703.1	KEGG: pde:Pden_3242 aldo/keto reductase; PFAM: NADP-dependent oxidoreductase domain
YP_005717704.1	KEGG: mes:Meso_3899 twin-arginine translocation pathway signal
YP_005717705.1	PFAM: Protein of unknown function DUF900, hydrolase-like; KEGG: smd:Smed_4880 protein of unknown function DUF900 hydrolase family protein
YP_005717706.1	KEGG: rlg:Rleg_2399 hypothetical protein
YP_005717707.1	KEGG: smd:Smed_5185 hypothetical protein
YP_005717708.1	PFAM: Protein of unknown function DUF2092, periplasmic; KEGG: bid:Bind_2755 hypothetical protein
YP_005717709.1	KEGG: mlo:mlr5473 hypothetical protein
YP_005717710.1	PFAM: Domain of unknown function DUF1254; Domain of unknown function DUF1214; KEGG: spl:Spea_2579 hypothetical protein
YP_005717711.1	PFAM: Domain of unknown function DUF1254; Domain of unknown function DUF1214; KEGG: rlg:Rleg_6960 protein of unknown function DUF1254
YP_005717712.1	TIGRFAM: Cytochrome c oxidase cbb3-type, subunit I; KEGG: smd:Smed_5926 cbb3-type cytochrome c oxidase subunit I; PFAM: Cytochrome c oxidase, subunit I
YP_005717713.1	KEGG: smd:Smed_5925 cbb3-type cytochrome c oxidase subunit II; TIGRFAM: Cytochrome c oxidase, monohaem subunit/FixO; PFAM: Cytochrome c oxidase, monohaem subunit/FixO
YP_005717714.1	KEGG: rhi:NGR_c25790 putative cbb3 cytochrome oxidase subunit FixQ protein
YP_005717715.1	KEGG: smd:Smed_5923 cytochrome c oxidase, cbb3-type, subunit III; TIGRFAM: Cytochrome c oxidase cbb3-type, subunit III; PFAM: Cytochrome c, class I
YP_005717716.1	KEGG: smd:Smed_5922 hypothetical protein
YP_005717717.1	PFAM: Protein of unknown function DUF2189, transmembrane; KEGG: smd:Smed_5921 hypothetical protein
YP_005717718.1	TIGRFAM: ATPase, P type, cation/copper-transporter; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; ATPase, P-type, heavy metal translocating; KEGG: smd:Smed_5920 copper-translocating P-type ATPase; PFAM: ATPase, P-type, ATPase-associated domain; Heavy metal transport/detoxification protein; Haloacid dehalogenase-like hydrolase
YP_005717719.1	KEGG: smd:Smed_5919 cytochrome oxidase maturation protein, cbb3-type; TIGRFAM: Cytochrome oxidase maturation protein cbb3-type; PFAM: Cytochrome oxidase maturation protein cbb3-type
YP_005717720.1	KEGG: smd:Smed_5918 putative transmembrane protein
YP_005717721.1	KEGG: smd:Smed_5917 hypothetical protein
YP_005717722.1	PFAM: Reverse transcriptase; Group II intron, maturase-specific; KEGG: rhi:NGR_b07990 putative reverse transcriptase/maturase
YP_005717723.1	KEGG: smd:Smed_6023 transposase
YP_005717724.1	PFAM: Protein of unknown function DUF2092, periplasmic; Outer membrane protein, OmpA/MotB, C-terminal; KEGG: smd:Smed_5762 OmpA/MotB domain-containing protein
YP_005717725.1	KEGG: smd:Smed_5763 hypothetical protein
YP_005717726.1	TIGRFAM: Aquaporin; HAMAP: Aquaporin Z; KEGG: smd:Smed_2078 aquaporin Z; PFAM: Major intrinsic protein
YP_005717727.1	manually curated; KEGG: smd:Smed_6258 transposase
YP_005717728.1	PFAM: Mechanosensitive ion channel MscS; KEGG: smd:Smed_3001 MscS mechanosensitive ion channel
YP_005717729.1	KEGG: smd:Smed_3000 hypothetical protein
YP_005717730.1	KEGG: rhi:NGR_c26760 putative CBS domain protein; PFAM: Cystathionine beta-synthase, core; SMART: Cystathionine beta-synthase, core
YP_005717731.1	KEGG: rhi:NGR_b13620 putative 3-hydroxyalkanoate synthetase
YP_005717732.1	KEGG: rhi:NGR_b13630 phosphate acetyltransferase; PFAM: Phosphate acetyl/butaryl transferase
YP_005717733.1	TIGRFAM: Acetate kinase; KEGG: rhi:NGR_b13640 acetate kinase; PFAM: Acetate/butyrate kinase
YP_005717734.1	KEGG: rhi:NGR_b13650 enoyl-(acyl carrier protein) reductase; PFAM: Short-chain dehydrogenase/reductase SDR
YP_005717735.1	PFAM: Protein of unknown function DUF1212; KEGG: smd:Smed_3002 hypothetical protein
YP_005717736.1	KEGG: smd:Smed_2997 signal-transduction protein; PFAM: Cystathionine beta-synthase, core; Transport-associated; SMART: Cystathionine beta-synthase, core
YP_005717737.1	PFAM: Alcohol dehydrogenase, C-terminal; Alcohol dehydrogenase GroES-like; KEGG: smd:Smed_2996 alcohol dehydrogenase
YP_005717738.1	KEGG: smd:Smed_2995 putative phosphoketolase; PFAM: Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase, N-terminal; Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase, C-terminal; Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase
YP_005717739.1	KEGG: smd:Smed_2994 phosphoglycerate mutase; PFAM: Histidine phosphatase superfamily, clade-1; SMART: Histidine phosphatase superfamily, clade-1
YP_005717740.1	PFAM: Glycosyltransferase 36; Glycosyltransferase 36 associated; Putative carbohydrate binding; KEGG: smd:Smed_2993 glycosyltransferase 36
YP_005717741.1	PFAM: Protein of unknown function DUF2329; KEGG: smd:Smed_2992 hypothetical protein
YP_005717742.1	PFAM: Ethanolamine ammonia lyase large subunit; Ethanolamine ammonia-lyase light chain; KEGG: rhi:NGR_c26790 putative ethanolamine/propanediol ammonia-lyase heavy chain
YP_005717743.1	KEGG: smd:Smed_5186 hypothetical protein
YP_005717744.1	KEGG: sno:Snov_2677 short-chain dehydrogenase/reductase SDR; manually curated; PFAM: Short-chain dehydrogenase/reductase SDR
YP_005717745.1	KEGG: sno:Snov_1303 alcohol dehydrogenase zinc-binding domain protein; PFAM: Alcohol dehydrogenase, C-terminal; Alcohol dehydrogenase GroES-like
YP_005717746.1	PFAM: Oxidoreductase, N-terminal; KEGG: rle:pRL110139 putative oxidoreductase
YP_005717747.1	manually curated; KEGG: sno:Snov_1304 hypothetical protein
YP_005717748.1	KEGG: rle:pRL120791 putative two-component response regulator transcriptional regulatory protein; PFAM: Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain
YP_005717749.1	KEGG: rhi:NGR_b16840 putative NodW, nodulation protein; PFAM: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal; SMART: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal
YP_005717750.1	TIGRFAM: PAS; PFAM: ATPase-like, ATP-binding domain; PAS fold-3; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; KEGG: atu:Atu4305 two component sensor kinase; SMART: ATPase-like, ATP-binding domain; PAC motif; PAS; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain
YP_005717751.1	KEGG: bbt:BBta_1889 non-heme chloroperoxidase; PFAM: Alpha/beta hydrolase fold-1
YP_005717752.1	KEGG: bja:blr7067 putative cyclase; PFAM: Beta-lactamase-like; SMART: Beta-lactamase-like
YP_005717753.1	KEGG: azl:AZL_c03060 alkylhydroperoxidase AhpD core; TIGRFAM: Alkylhydroperoxidase AhpD core; PFAM: Carboxymuconolactone decarboxylase
YP_005717754.1	KEGG: bra:BRADO3525 putative cystathionine beta-lyase (CBL; beta-cystathionase; cysteine lyase); PFAM: Cys/Met metabolism, pyridoxal phosphate-dependent enzyme
YP_005717755.1	KEGG: bmj:BMULJ_03338 hypothetical protein
YP_005717756.1	KEGG: rlg:Rleg_0491 alcohol dehydrogenase zinc-binding domain protein; PFAM: Alcohol dehydrogenase, C-terminal; Alcohol dehydrogenase GroES-like
YP_005717758.1	KEGG: dre:564820 transmembrane glycoprotein A33-like
YP_005717759.1	KEGG: smd:Smed_5186 hypothetical protein
YP_005717760.1	KEGG: smd:Smed_4777 BA14K family protein; manually curated; PFAM: BA14K-like
YP_005717761.1	PFAM: Adenylyl cyclase class-3/4/guanylyl cyclase; HAMP linker domain; KEGG: amr:AM1_1401 cyclase, putative; SMART: Adenylyl cyclase class-3/4/guanylyl cyclase; HAMP linker domain
YP_005717762.1	manually curated; KEGG: smd:Smed_3001 MscS mechanosensitive ion channel
YP_005717764.1	PFAM: Transposase, mutator type; KEGG: aex:Astex_0070 transposase mutator type
YP_005717765.1	PFAM: Transposase, IS4-like; Transposase InsH, N-terminal; KEGG: rle:pRL70077 putative transposase
YP_005717766.1	PFAM: Protein of unknown function DUF2721; KEGG: rhi:NGR_b05070 hypothetical protein
YP_005717767.1	KEGG: smd:Smed_3000 hypothetical protein
YP_005717768.1	KEGG: smd:Smed_5182 NapC/NirT family periplasmic nitrate (or nitrite) reductase C-type cytochrome; TIGRFAM: Periplasmic nitrate reductase c-type cytochrome, NapC/NirT; PFAM: NapC/NirT cytochrome c, N-terminal
YP_005717769.1	KEGG: smd:Smed_5183 hypothetical protein
YP_005717770.1	KEGG: smd:Smed_5184 transcriptional regulator FixK; PFAM: Cyclic nucleotide-binding domain; HTH transcriptional regulator, Crp; SMART: HTH transcriptional regulator, Crp; Cyclic nucleotide-binding domain
YP_005717771.1	KEGG: smd:Smed_5185 hypothetical protein
YP_005717772.1	KEGG: smd:Smed_5186 hypothetical protein
YP_005717773.1	PFAM: Uncharacterised protein family UPF0118; KEGG: smd:Smed_5187 hypothetical protein
YP_005717774.1	KEGG: smd:Smed_5188 hypothetical protein
YP_005717775.1	PFAM: Secretion protein HlyD; KEGG: smd:Smed_5189 secretion protein HlyD family protein
YP_005717776.1	KEGG: smd:Smed_5190 hypothetical protein; TIGRFAM: Polyphosphate kinase 2, PA0141; PFAM: Polyphosphate kinase-2-related
YP_005717777.1	PFAM: Domain of unknown function DUF125, transmembrane; KEGG: smd:Smed_5191 hypothetical protein
YP_005717778.1	KEGG: smd:Smed_5192 calcium/cation antiporter; TIGRFAM: Calcium/proton exchanger superfamily; PFAM: Sodium/calcium exchanger membrane region
YP_005717779.1	KEGG: smd:Smed_5193 extracellular solute-binding protein; PFAM: Extracellular solute-binding protein, family 3; SMART: Extracellular solute-binding protein, family 3
YP_005717780.1	PFAM: Amino acid permease domain; KEGG: smd:Smed_5194 putrescine transporter
YP_005717781.1	KEGG: smd:Smed_5195 ornithine decarboxylase; PFAM: Orn/Lys/Arg decarboxylase, major domain; Orn/Lys/Arg decarboxylase, C-terminal; Orn/Lys/Arg decarboxylase, N-terminal
YP_005717782.1	KEGG: smd:Smed_5196 lysine decarboxylase; PFAM: Orn/Lys/Arg decarboxylase, major domain; Orn/Lys/Arg decarboxylase, C-terminal; Orn/Lys/Arg decarboxylase, N-terminal
YP_005717783.1	PFAM: Cation efflux protein; KEGG: smd:Smed_5197 cation efflux protein
YP_005717784.1	PFAM: Amino acid permease domain; KEGG: smd:Smed_5198 amino acid permease-associated region
YP_005717785.1	KEGG: smd:Smed_5199 hypothetical protein
YP_005717786.1	PFAM: Protein of unknown function DUF2950; KEGG: smd:Smed_5200 hypothetical protein
YP_005717787.1	PFAM: Protein of unknown function DUF3300; KEGG: smd:Smed_5201 hypothetical protein
YP_005717789.1	TIGRFAM: Arginine deiminase; KEGG: smd:Smed_5202 arginine deiminase; PFAM: Amidinotransferase
YP_005717790.1	PFAM: Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding; Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain; TIGRFAM: Ornithine carbamoyltransferase; HAMAP: Ornithine carbamoyltransferase; KEGG: smd:Smed_5203 ornithine carbamoyltransferase
YP_005717791.1	TIGRFAM: Bacterial carbamate kinase; KEGG: smd:Smed_5204 carbamate kinase; PFAM: Aspartate/glutamate/uridylate kinase
YP_005717792.1	KEGG: smd:Smed_5205 hypothetical protein
YP_005717793.1	PFAM: Ion transport 2; KEGG: rhi:NGR_b00430 hypothetical protein
YP_005717794.1	KEGG: smd:Smed_3594 2-keto-3-deoxy-galactonokinase; PFAM: 2-keto-3-deoxy-galactonokinase
YP_005717795.1	PFAM: Dihydrodipicolinate synthetase; KEGG: smd:Smed_3593 dihydrodipicolinate synthetase
YP_005717796.1	PFAM: Mandelate racemase/muconate lactonizing enzyme, N-terminal; Mandelate racemase/muconate lactonizing enzyme, C-terminal; KEGG: smd:Smed_3592 mandelate racemase/muconate lactonizing protein; SMART: Mandelate racemase/muconate lactonizing enzyme, C-terminal
YP_005717797.1	PFAM: Bacterial extracellular solute-binding, family 1; KEGG: smd:Smed_3591 extracellular solute-binding protein
YP_005717798.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_3590 binding-protein-dependent transport systems inner membrane component
YP_005717799.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_3589 binding-protein-dependent transport systems inner membrane component
YP_005717800.1	PFAM: ABC transporter-like; KEGG: smd:Smed_3588 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_005717801.1	PFAM: NAD-dependent epimerase/dehydratase; KEGG: smd:Smed_3587 NAD-dependent epimerase/dehydratase
YP_005717802.1	KEGG: smd:Smed_3586 SMP-30/gluconolaconase/LRE domain-containing protein; PFAM: SMP-30/Gluconolaconase/LRE-like region; Transcription regulator IclR, C-terminal; Transcription regulator IclR, N-terminal; SMART: Transcription regulator IclR, N-terminal
YP_005717803.1	KEGG: smd:Smed_3585 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR
YP_005717804.1	PFAM: Type I phosphodiesterase/nucleotide pyrophosphatase/phosphate transferase; KEGG: dfe:Dfer_5338 type I phosphodiesterase/nucleotide pyrophosphatase
YP_005717805.1	manually curated; PFAM: HTH transcriptional regulator, DeoR; HTH transcriptional regulator, DeoR N-terminal; KEGG: mlo:mlr5891 transcription regulator; SMART: HTH transcriptional regulator, DeoR N-terminal
YP_005717806.1	PFAM: Bacterial extracellular solute-binding, family 1; KEGG: oan:Oant_4228 extracellular solute-binding protein
YP_005717807.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: pde:Pden_0830 binding-protein-dependent transport systems inner membrane component
YP_005717808.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: mlo:mll3067 ABC transporter, permease protein
YP_005717809.1	KEGG: plu:plu1412 hypothetical protein; manually curated; PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase
YP_005717810.1	KEGG: mlo:mlr9540 hypothetical protein; manually curated; PFAM: GHMP kinase
YP_005717811.1	PFAM: CDP-alcohol phosphatidyltransferase; KEGG: mbu:Mbur_0786 CDP-alcohol phosphatidyltransferase
YP_005717812.1	PFAM: Asparagine synthase; KEGG: mlo:mlr9125 hypothetical protein
YP_005717813.1	KEGG: smd:Smed_6464 IstB ATP binding domain-containing protein; PFAM: IstB-like ATP-binding protein; IstB-like ATP binding N-terminal; SMART: ATPase, AAA+ type, core
YP_005717814.1	PFAM: Integrase, catalytic core; RNA polymerase sigma factor 70, region 4 type 2; KEGG: ret:RHE_PA00009 IS21/IS408/IS1162 insertion sequence transposase protein
YP_005717815.1	KEGG: smd:Smed_6514 hypothetical protein
YP_005717816.1	KEGG: smd:Smed_6513 transposase IS66; manually curated; PFAM: Transposase, IS66
YP_005717817.1	PFAM: Transposase (putative), IS66 Orf2-like; KEGG: smd:Smed_6512 IS66 Orf2 family protein
YP_005717818.1	PFAM: Transposase IS3/IS911family; KEGG: smd:Smed_6511 transposase IS3/IS911 family protein
YP_005717820.1	PFAM: ROSMUCR transcriptional regulator; KEGG: smd:Smed_6025 MucR family transcriptional regulator
YP_005717821.1	KEGG: vei:Veis_0043 xylose isomerase domain-containing protein; PFAM: Xylose isomerase, TIM barrel domain
YP_005717822.1	KEGG: scl:sce4596 glucose--fructose oxidoreductase precursor; PFAM: Oxidoreductase, N-terminal; Oxidoreductase, C-terminal
YP_005717823.1	PFAM: Uncharacterised protein family UPF0249/HpnK; KEGG: ttr:Tter_2373 YdjC family protein
YP_005717824.1	KEGG: mil:ML5_5784 oxidoreductase domain protein; PFAM: Oxidoreductase, N-terminal; Oxidoreductase, C-terminal
YP_005717825.1	PFAM: Periplasmic binding protein/LacI transcriptional regulator; KEGG: smd:Smed_4268 periplasmic binding protein/LacI transcriptional regulator
YP_005717826.1	KEGG: mlo:mll2434 transcriptional regulator; PFAM: HTH transcriptional regulator, GntR; Aminotransferase, class I/classII; SMART: HTH transcriptional regulator, GntR
YP_005717827.1	PFAM: Fatty acid desaturase, type 1; KEGG: smd:Smed_5007 fatty acid desaturase
YP_005717828.1	KEGG: smd:Smed_5006 Rieske (2Fe-2S) domain-containing protein; TIGRFAM: MocE Rieske [2Fe-2S]; PFAM: Rieske [2Fe-2S] iron-sulphur domain
YP_005717829.1	KEGG: rhi:NGR_b17090 putative ferredoxin reductase MocF; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region
YP_005717830.1	TIGRFAM: Formyltetrahydrofolate deformylase; KEGG: smd:Smed_2830 formyltetrahydrofolate deformylase; PFAM: Formyl transferase, N-terminal; Amino acid-binding ACT
YP_005717831.1	PFAM: Cytochrome c, class I; KEGG: azc:AZC_2720 putative cytochrome-c oxidase protein
YP_005717832.1	KEGG: ebi:EbC_44380 gluconate 2-dehydrogenase (acceptor); PFAM: Glucose-methanol-choline oxidoreductase, C-terminal
YP_005717833.1	KEGG: kvu:EIO_0521 dehydrogenase small subunit
YP_005717834.1	KEGG: mrd:Mrad2831_1567 major facilitator transporter; manually curated; PFAM: Major facilitator superfamily MFS-1
YP_005717835.1	TIGRFAM: NifT/FixU; KEGG: cya:CYA_2266 DegT/DnrJ/EryC1/StrS aminotransferase family protein; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; NifT/FixU
YP_005717837.1	KEGG: azc:AZC_3447 FixA protein
YP_005717838.1	PFAM: HTH transcriptional regulator, LysR; LysR, substrate-binding; KEGG: smd:Smed_5941 LysR family transcriptional regulator
YP_005717839.1	PFAM: Transposase, IS4-like; Transposase InsH, N-terminal; KEGG: rle:pRL70077 putative transposase
YP_005717840.1	KEGG: rhi:NGR_a00350 uncharacterized transcription regulator (Cro/CI family); PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3
YP_005717841.1	PFAM: PilT protein, N-terminal; KEGG: rlg:Rleg_6277 PilT protein domain protein
YP_005717842.1	KEGG: rlg:Rleg_6276 prevent-host-death family protein; TIGRFAM: Prevent-host-death protein; PFAM: Prevent-host-death protein
YP_005717843.1	KEGG: smd:Smed_6428 hypothetical protein
YP_005717844.1	KEGG: smd:Smed_6429 monophenol monooxygenase; PFAM: Tyrosinase
YP_005717845.1	KEGG: smd:Smed_6430 hypothetical protein
YP_005717846.1	KEGG: smd:Smed_6061 hypothetical protein
YP_005717847.1	PFAM: NUDIX hydrolase domain; KEGG: smd:Smed_5998 NUDIX hydrolase
YP_005717848.1	KEGG: atu:Atu4214 cold shock protein; PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein
YP_005717849.1	manually curated; KEGG: smd:Smed_6133 hypothetical protein
YP_005717850.1	KEGG: smd:Smed_6134 XRE family transcriptional regulator; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3
YP_005717851.1	KEGG: smd:Smed_1901 hypothetical protein
YP_005717852.1	PFAM: Transposase, IS4-like; Transposase InsH, N-terminal; KEGG: rle:pRL70077 putative transposase
YP_005717853.1	KEGG: smd:Smed_6061 hypothetical protein
YP_005717854.1	KEGG: smd:Smed_6060 amino acid carrier protein; TIGRFAM: Sodium:alanine symporter; PFAM: Sodium:alanine symporter
YP_005717855.1	KEGG: smd:Smed_1643 outer membrane protease
YP_005717856.1	KEGG: smd:Smed_1643 outer membrane protease
YP_005717857.1	PFAM: ROSMUCR transcriptional regulator; KEGG: smd:Smed_5993 MucR family transcriptional regulator
YP_005717858.1	PFAM: Methyltransferase type 11; KEGG: smd:Smed_6054 methyltransferase type 11
YP_005717859.1	PFAM: Transposase IS3/IS911family; KEGG: smd:Smed_6511 transposase IS3/IS911 family protein
YP_005717860.1	KEGG: smd:Smed_5992 thiamine pyrophosphate binding domain-containing protein; PFAM: Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain; Thiamine pyrophosphate enzyme, C-terminal TPP-binding; Thiamine pyrophosphate enzyme, central domain
YP_005717861.1	manually curated; KEGG: smd:Smed_6258 transposase
YP_005717862.1	KEGG: smd:Smed_5991 beta-lactamase domain-containing protein; PFAM: Beta-lactamase-like; SMART: Beta-lactamase-like
YP_005717863.1	PFAM: Xylose isomerase, TIM barrel domain; KEGG: smd:Smed_5990 xylose isomerase domain-containing protein
YP_005717864.1	KEGG: smd:Smed_5989 xylose isomerase domain-containing protein; PFAM: Xylose isomerase, TIM barrel domain
YP_005717865.1	KEGG: smd:Smed_5988 hypothetical protein
YP_005717866.1	KEGG: smd:Smed_5987 hypothetical protein
YP_005717867.1	PFAM: FAD dependent oxidoreductase; Glucose-methanol-choline oxidoreductase, N-terminal; KEGG: smd:Smed_5986 putative dehydrogenase large subunit protein
YP_005717868.1	KEGG: smd:Smed_5985 glucan 1,4-alpha-glucosidase; PFAM: Glycoside hydrolase 15-related
YP_005717869.1	KEGG: smd:Smed_6048 hypothetical protein
YP_005717870.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: smd:Smed_5980 LysR family transcriptional regulator
YP_005717871.1	PFAM: Rieske [2Fe-2S] iron-sulphur domain; KEGG: smd:Smed_5979 Rieske (2Fe-2S) domain-containing protein
YP_005717872.1	PFAM: Ferredoxin; Oxidoreductase FAD/NAD(P)-binding; Oxidoreductase, FAD-binding domain; KEGG: smd:Smed_5978 ferredoxin
YP_005717874.1	KEGG: smd:Smed_5977 flavin reductase domain-containing protein; PFAM: Flavin reductase-like, FMN-binding; SMART: Flavin reductase-like, FMN-binding
YP_005717875.1	KEGG: mlo:mll6378 hypothetical protein; PFAM: B3/B4 tRNA-binding domain; SMART: B3/B4 tRNA-binding domain
YP_005717876.1	PFAM: Negative transcriptional regulator; KEGG: rlt:Rleg2_5075 FMN-binding negative transcriptional regulator
YP_005717877.1	KEGG: rlt:Rleg2_5076 GntR family transcriptional regulator with aminotransferase domain; PFAM: HTH transcriptional regulator, GntR; Aminotransferase, class I/classII; SMART: HTH transcriptional regulator, GntR
YP_005717878.1	PFAM: Transposase, mutator type; KEGG: sjp:SJA_P2-00250 putative transposase
YP_005717879.1	PFAM: Lytic transglycosylase-like, catalytic; KEGG: smd:Smed_6162 type IV secretion system lytic transglycosylase VirB1
YP_005717880.1	PFAM: Conjugal transfer,TrbC; KEGG: smd:Smed_6161 type IV secretion system pilin subunit VirB2
YP_005717881.1	PFAM: Type IV secretion system, VirB3 / TrbD / AvhB; KEGG: smd:Smed_6160 type IV secretion system protein VirB3
YP_005717882.1	KEGG: smd:Smed_6159 type IV secretion system protein VirB4; TIGRFAM: CagE, TrbE, VirB component of type IV transporter system; PFAM: CagE, TrbE, VirB component of type IV transporter system, central domain
YP_005717883.1	KEGG: smd:Smed_6158 type IV secretion system protein VirB5
YP_005717884.1	PFAM: Conjugal transfer, TrbL/VirB6; KEGG: smd:Smed_6157 type IV secretion system protein VirB6
YP_005717885.1	manually curated; KEGG: smd:Smed_6156 type IV secretion system lipoprotein VirB7
YP_005717886.1	PFAM: VirB8; KEGG: smd:Smed_6155 type IV secretion system protein VirB8
YP_005717887.1	KEGG: smd:Smed_6154 type IV secretion system protein VirB9; TIGRFAM: P-type conjugative transfer protein VirB9; PFAM: Conjugal transfer, TrbG/VirB9/CagX
YP_005717888.1	PFAM: Type IV secretion system, VirB10 / TraB / TrbI; KEGG: smd:Smed_6153 type IV secretion system protein VirB10
YP_005717889.1	KEGG: smd:Smed_6152 type IV secretion system protein VirB11; TIGRFAM: ATPase, P-type DNA transfer, VirB11; PFAM: Type II secretion system protein E
YP_005717890.1	PFAM: Transposase IS3/IS911family; KEGG: smd:Smed_6511 transposase IS3/IS911 family protein
YP_005717891.1	PFAM: Transposase (putative), IS66 Orf2-like; KEGG: smd:Smed_6512 IS66 Orf2 family protein
YP_005717892.1	KEGG: smd:Smed_6513 transposase IS66; manually curated; PFAM: Transposase, IS66
YP_005717893.1	KEGG: smd:Smed_6514 hypothetical protein
YP_005717894.1	manually curated; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; KEGG: smd:Smed_6145 two-component response regulator VirG; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal
YP_005717895.1	KEGG: smd:Smed_6143 type IV secretion system protein VirD4; manually curated; PFAM: Ti-type conjugative transfer system, TraG-like
YP_005717896.1	KEGG: smd:Smed_6142 hypothetical protein
YP_005717897.1	KEGG: aex:Astex_0070 transposase mutator type; manually curated; PFAM: Transposase, mutator type
YP_005717898.1	PFAM: Transposase IS3/IS911family; KEGG: rhi:NGR_b01500 probable SyrB-like regulator
YP_005717899.1	KEGG: rhi:NGR_b01510 hypothetical protein
YP_005717900.1	KEGG: smd:Smed_5967 WGR domain-containing protein; PFAM: WGR domain; SMART: WGR domain
YP_005717901.1	KEGG: smd:Smed_6378 XRE family transcriptional regulator; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3
YP_005717902.1	KEGG: avn:Avin_27830 hypothetical protein; PFAM: Protein of unknown function DUF891; Helix-turn-helix type 3; SMART: Helix-turn-helix type 3
YP_005717904.1	KEGG: smd:Smed_5977 flavin reductase domain-containing protein; PFAM: Flavin reductase-like, FMN-binding; SMART: Flavin reductase-like, FMN-binding
YP_005717905.1	KEGG: smd:Smed_5937 response regulator receiver protein
YP_005717906.1	KEGG: smd:Smed_6270 transcriptional regulator FixK; PFAM: HTH transcriptional regulator, Crp; Cyclic nucleotide-binding domain; SMART: HTH transcriptional regulator, Crp; Cyclic nucleotide-binding domain
YP_005717907.1	KEGG: smd:Smed_6269 pyridoxamine 5'-phosphate oxidase-related FMN-binding
YP_005717908.1	TIGRFAM: Cytochrome c oxidase cbb3-type, subunit I; KEGG: smd:Smed_6268 cbb3-type cytochrome c oxidase subunit I; PFAM: Cytochrome c oxidase, subunit I
YP_005717909.1	KEGG: smd:Smed_6267 cbb3-type cytochrome c oxidase subunit II; TIGRFAM: Cytochrome c oxidase, monohaem subunit/FixO; PFAM: Cytochrome c oxidase, monohaem subunit/FixO
YP_005717910.1	KEGG: smd:Smed_6266 Cbb3-type cytochrome oxidase component
YP_005717911.1	KEGG: smd:Smed_6265 cytochrome c oxidase, cbb3-type, subunit III; TIGRFAM: Cytochrome c oxidase cbb3-type, subunit III; PFAM: Cytochrome c, class I
YP_005717912.1	KEGG: smd:Smed_6263 maltose O-acetyltransferase; PFAM: Bacterial transferase hexapeptide repeat
YP_005717913.1	KEGG: smd:Smed_6262 hypothetical protein
YP_005717914.1	PFAM: Ribosomal RNA methyltransferase RrmJ/FtsJ; KEGG: smd:Smed_6261 NoeA host specific nodulation protein
YP_005717915.1	PFAM: Sulfatase; KEGG: smd:Smed_6260 NoeB host specific nodulation protein
YP_005717916.1	KEGG: smd:Smed_6257 GntR family transcriptional regulator; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: GntR, C-terminal; HTH transcriptional regulator, GntR
YP_005717917.1	PFAM: Transposase, mutator type; KEGG: aex:Astex_0070 transposase mutator type
YP_005717918.1	PFAM: Protein of unknown function DUF1185; KEGG: smd:Smed_6255 hypothetical protein
YP_005717919.1	PFAM: Alpha/beta hydrolase fold-1; KEGG: smd:Smed_6254 alpha/beta hydrolase fold
YP_005717920.1	KEGG: smd:Smed_6253 flavin reductase domain-containing protein; PFAM: Flavin reductase-like, FMN-binding; SMART: Flavin reductase-like, FMN-binding
YP_005717921.1	PFAM: Luciferase-like, subgroup; KEGG: smd:Smed_6252 luciferase family protein
YP_005717922.1	KEGG: smd:Smed_6251 aldehyde dehydrogenase; PFAM: Aldehyde dehydrogenase domain
YP_005717923.1	PFAM: NIPSNAP; KEGG: smd:Smed_6250 NIPSNAP family protein
YP_005717924.1	PFAM: Bacterial extracellular solute-binding, family 1; KEGG: smd:Smed_6249 extracellular solute-binding protein
YP_005717925.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_6248 binding-protein-dependent transport systems inner membrane component
YP_005717926.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_6247 binding-protein-dependent transport systems inner membrane component
YP_005717927.1	PFAM: ABC transporter-like; Transport-associated OB, type 2; KEGG: smd:Smed_6246 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_005717928.1	TIGRFAM: Succinic semialdehyde dehydrogenase; KEGG: smd:Smed_6245 succinic semialdehyde dehydrogenase; PFAM: Aldehyde dehydrogenase domain
YP_005717929.1	PFAM: Transposase IS3/IS911family; KEGG: smd:Smed_6244 transposase IS3/IS911 family protein
YP_005717930.1	KEGG: rhi:NGR_b01510 hypothetical protein
YP_005717931.1	KEGG: rlg:Rleg_0729 hypothetical protein
YP_005717932.1	PFAM: Transposase, mutator type; KEGG: smd:Smed_6034 transposase mutator type
YP_005717933.1	KEGG: rec:RHECIAT_PB0000002 hypothetical protein
YP_005717935.1	KEGG: rsk:RSKD131_4507 AcrB/AcrD/AcrF family protein
YP_005717936.1	KEGG: smd:Smed_6235 NifT/FixU family protein; TIGRFAM: NifT/FixU; PFAM: NifT/FixU
YP_005717937.1	PFAM: 4Fe-4S binding domain; KEGG: smd:Smed_6234 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
YP_005717938.1	TIGRFAM: Nitrogenase cofactor biosynthesis protein NifB; PFAM: Radical SAM; Dinitrogenase iron-molybdenum cofactor biosynthesis; KEGG: smd:Smed_6233 nitrogenase cofactor biosynthesis protein NifB; SMART: Elongator protein 3/MiaB/NifB
YP_005717939.1	TIGRFAM: Nif-specific regulatory protein; PFAM: RNA polymerase sigma factor 54, interaction; GAF; Helix-turn-helix, Fis-type; KEGG: smd:Smed_6232 transcriptional regulator NifA; SMART: GAF; ATPase, AAA+ type, core
YP_005717940.1	KEGG: smd:Smed_6231 FixX ferredoxin-like protein
YP_005717941.1	PFAM: FAD dependent oxidoreductase; KEGG: smd:Smed_6230 FAD dependent oxidoreductase
YP_005717942.1	KEGG: smd:Smed_6229 electron transfer flavoprotein alpha/beta-subunit; PFAM: Electron transfer flavoprotein, alpha/beta-subunit, N-terminal; Electron transfer flavoprotein, alpha subunit, C-terminal; SMART: Electron transfer flavoprotein, alpha/beta-subunit, N-terminal
YP_005717943.1	KEGG: smd:Smed_6228 electron transfer flavoprotein alpha/beta-subunit; PFAM: Electron transfer flavoprotein, alpha/beta-subunit, N-terminal; SMART: Electron transfer flavoprotein, alpha/beta-subunit, N-terminal
YP_005717945.1	PFAM: Nitrogenase iron protein, subunit NifH/Protochlorophyllide reductase, subunit ChlL; TIGRFAM: Nitrogenase iron protein NifH; HAMAP: Nitrogenase iron protein NifH; KEGG: smd:Smed_6225 nitrogenase reductase
YP_005717946.1	TIGRFAM: Nitrogenase molybdenum-iron protein alpha chain; Nitrogenase component 1, alpha chain; KEGG: smd:Smed_6224 nitrogenase molybdenum-iron protein alpha chain; PFAM: Nitrogenase/oxidoreductase, component 1
YP_005717947.1	TIGRFAM: Nitrogenase molybdenum-iron protein beta chain; KEGG: smd:Smed_6223 nitrogenase molybdenum-iron protein beta chain; PFAM: Nitrogenase/oxidoreductase, component 1
YP_005717948.1	KEGG: smd:Smed_6222 nitrogenase molybdenum-cofactor biosynthesis protein NifE; TIGRFAM: Nitrogenase MoFe cofactor biosynthesis protein NifE; PFAM: Nitrogenase/oxidoreductase, component 1
YP_005717949.1	KEGG: smd:Smed_6221 nitrogen fixation protein NifX; TIGRFAM: Nitrogen fixation protein NifX; PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis
YP_005717950.1	PFAM: Uncharacterised protein family UPF0437; KEGG: smd:Smed_6220 hypothetical protein
YP_005717951.1	TIGRFAM: Ferredoxin III 4[4Fe-4S], nif-specific; KEGG: smd:Smed_6219 ferredoxin III 4(4Fe-4S) nif-specific
YP_005717952.1	KEGG: rhi:NGR_c04860 putative dioxygenase, alpha-subunit
YP_005717953.1	KEGG: smd:Smed_6217 SyrA protein involved in EPS production
YP_005717954.1	PFAM: HTH transcriptional regulator, LysR; KEGG: smd:Smed_6212 LysR family transcriptional regulator
YP_005717955.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: smd:Smed_6204 LysR family transcriptional regulator
YP_005717956.1	manually curated; KEGG: smd:Smed_6258 transposase
YP_005717958.1	KEGG: smd:Smed_6196 NodH sulfotransferase
YP_005717959.1	PFAM: Phosphopantetheine-binding; KEGG: smd:Smed_6195 NodF acyl carrier protein
YP_005717960.1	KEGG: smd:Smed_6194 beta-ketoacyl synthase; PFAM: Beta-ketoacyl synthase, N-terminal; Beta-ketoacyl synthase, C-terminal
YP_005717962.1	TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; KEGG: smd:Smed_6193 3-ketoacyl-(acyl-carrier-protein) reductase NodG; PFAM: Short-chain dehydrogenase/reductase SDR
YP_005717963.1	TIGRFAM: Sulphate adenylyltransferase, small subunit; KEGG: smd:Smed_6192 sulfate adenylyltransferase subunit 2; PFAM: Phosphoadenosine phosphosulphate reductase
YP_005717964.1	TIGRFAM: Sulphate adenylyltransferase, large subunit; Adenylylsulphate kinase, C-terminal; Small GTP-binding protein; KEGG: smd:Smed_6191 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; PFAM: Adenylylsulphate kinase, C-terminal; Protein synthesis factor, GTP-binding
YP_005717965.1	manually curated; KEGG: smd:Smed_6258 transposase
YP_005717966.1	PFAM: Transposase, mutator type; KEGG: smd:Smed_6034 transposase mutator type
YP_005717967.1	KEGG: smd:Smed_6188 ABC transporter; TIGRFAM: ABC-2 type transporter, NodJ; PFAM: ABC-2 type transporter
YP_005717968.1	SMART: ATPase, AAA+ type, core; TIGRFAM: Nodulation ABC transporter, NodI; KEGG: smd:Smed_6187 nodulation factor exporter subunit NodI; PFAM: ABC transporter-like
YP_005717969.1	KEGG: smd:Smed_6186 glycosyl transferase family protein; PFAM: Glycosyl transferase, family 2; Fungal chitin synthase
YP_005717970.1	PFAM: Polysaccharide deacetylase; KEGG: smd:Smed_6185 polysaccharide deacetylase
YP_005717971.1	PFAM: Nodulation protein A, NodA; KEGG: smd:Smed_6184 acyltransferase NodA
YP_005717972.1	PFAM: HTH transcriptional regulator, LysR; LysR, substrate-binding; KEGG: smd:Smed_6183 LysR family transcriptional regulator
YP_005717973.1	TIGRFAM: Nitrogenase molybdenum-iron cofactor biosynthesis protein; KEGG: smd:Smed_6181 nitrogenase molybdenum-cofactor biosynthesis protein NifN; PFAM: Nitrogenase/oxidoreductase, component 1
YP_005717974.1	PFAM: MaoC-like dehydratase; KEGG: rlt:Rleg2_5029 MaoC domain-containing protein dehydratase
YP_005717975.1	PFAM: Acriflavin resistance protein; KEGG: smd:Smed_6179 acriflavin resistance protein
YP_005717976.1	KEGG: smd:Smed_6178 RND family efflux transporter MFP subunit; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD
YP_005717977.1	PFAM: Glutamine amidotransferase, class-II; Sugar isomerase (SIS); TIGRFAM: Glucosamine-fructose-6-phosphate aminotransferase, isomerising; HAMAP: Glucosamine-fructose-6-phosphate aminotransferase, isomerising; KEGG: smd:Smed_1404 glucosamine--fructose-6-phosphate aminotransferase
YP_005717978.1	PFAM: Protein of unknown function DUF159; KEGG: ret:RHE_PF00147 hypothetical protein
YP_005717979.1	KEGG: ret:RHE_PF00150 hypothetical protein
YP_005717980.1	SMART: Polymerase/histidinol phosphatase, N-terminal; TIGRFAM: DNA polymerase III, alpha subunit; KEGG: rlt:Rleg2_5159 DNA polymerase III subunit alpha; PFAM: Bacterial DNA polymerase III, alpha subunit; Nucleic acid binding, OB-fold, tRNA/helicase-type; PHP, C-terminal
YP_005717981.1	KEGG: rhi:NGR_b15140 hypothetical protein
YP_005717982.1	PFAM: Plasmid pRiA4b ORF-3-like; KEGG: bbt:BBta_p0270 hypothetical protein
YP_005717983.1	PFAM: Antirestriction protein; KEGG: mes:Meso_4600 antirestriction protein
YP_005717984.1	KEGG: rlt:Rleg2_4925 hypothetical protein
YP_005717985.1	PFAM: Protein of unknown function DUF1173; KEGG: ret:RHE_PD00156 hypothetical protein
YP_005717986.1	KEGG: rle:pRL70011 hypothetical protein
YP_005717987.1	KEGG: rlt:Rleg2_6192 hypothetical protein
YP_005717988.1	PFAM: Protein of unknown function DUF2493; KEGG: rhi:NGR_b10420 hypothetical protein
YP_005717989.1	KEGG: rlg:Rleg_6509 prevent-host-death family protein
YP_005717990.1	KEGG: rec:RHECIAT_PB0000175 hypothetical protein
YP_005717991.1	manually curated; KEGG: oan:Oant_4762 hypothetical protein
YP_005717992.1	KEGG: ret:RHE_PD00167 conjugal transfer coupling protein TraG; TIGRFAM: Ti-type conjugative transfer system, TraG; PFAM: Ti-type conjugative transfer system, TraG-like
YP_005717993.1	PFAM: Conjugal transfer, TraD, alpha-type; KEGG: rhi:NGR_b10530 TraD conjugal transfer protein
YP_005717994.1	PFAM: TraC-like; KEGG: rec:RHECIAT_PC0000883 conjugal transfer protein C
YP_005717995.1	KEGG: rhi:NGR_b10550 conjugal transfer protein TraA; TIGRFAM: Ti-type conjugative transfer relaxase TraA; PFAM: MobA/MobL protein
YP_005717996.1	PFAM: Mechanosensitive ion channel MscS; KEGG: rhi:NGR_b12230 probable small-conductance mechanosensitive channel transmembrane protein
YP_005717998.1	KEGG: smd:Smed_5634 integral membrane sensor signal transduction histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain
YP_005717999.1	manually curated; PFAM: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal; KEGG: smd:Smed_5633 response regulator receiver protein; SMART: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal
YP_005718000.1	KEGG: smd:Smed_5632 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain
YP_005718001.1	PFAM: Sulfatase; KEGG: rlg:Rleg_6900 sulfatase
YP_005718002.1	KEGG: rlg:Rleg_6899 hypothetical protein
YP_005718004.1	TIGRFAM: Peptidase M20B, tripeptide aminopeptidase; KEGG: smd:Smed_5042 peptidase T; PFAM: Peptidase M20; Peptidase M20, dimerisation
YP_005718005.1	KEGG: smd:Smed_5412 hypothetical protein; PFAM: Capsule synthesis protein, CapA; SMART: Capsule synthesis protein, CapA
YP_005718006.1	PFAM: ABC transporter-like; Oligopeptide/dipeptide ABC transporter, C-terminal; KEGG: smd:Smed_5040 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_005718007.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_5039 binding-protein-dependent transport systems inner membrane component
YP_005718008.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_5038 binding-protein-dependent transport systems inner membrane component
YP_005718009.1	PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: smd:Smed_5416 extracellular solute-binding protein
YP_005718010.1	manually curated; KEGG: smd:Smed_5419 hypothetical protein
YP_005718011.1	PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: smd:Smed_5778 GCN5-related N-acetyltransferase
YP_005718012.1	KEGG: smd:Smed_5779 hypothetical protein
YP_005718013.1	KEGG: smd:Smed_5780 hypothetical protein
YP_005718014.1	KEGG: smd:Smed_5781 response regulator receiver protein; PFAM: Transcription factor LuxR-like, autoinducer-binding domain; Transcription regulator LuxR, C-terminal; SMART: Transcription regulator LuxR, C-terminal
YP_005718015.1	KEGG: rec:RHECIAT_PC0000881 hypothetical protein
YP_005718016.1	KEGG: mlo:mlr5913 phosphate regulatory protein; PFAM: Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, C-terminal
YP_005718017.1	KEGG: xau:Xaut_4889 autoinducer-binding domain-containing protein; PFAM: Transcription factor LuxR-like, autoinducer-binding domain; Transcription regulator LuxR, C-terminal; SMART: Transcription regulator LuxR, C-terminal
YP_005718018.1	PFAM: Integrase, catalytic core; KEGG: smd:Smed_4886 integrase catalytic region
YP_005718019.1	PFAM: Integrase, catalytic core; KEGG: smd:Smed_6420 integrase catalytic region
YP_005718020.1	KEGG: mlo:mll1856 hypothetical protein
YP_005718021.1	PFAM: Protein of unknown function DUF2136; KEGG: mch:Mchl_5738 hypothetical protein
YP_005718022.1	KEGG: rhi:NGR_a03310 conserved hypothetical 17.6 kDa protein
YP_005718023.1	PFAM: PilT protein, N-terminal; KEGG: pde:Pden_0483 PilT domain-containing protein
YP_005718024.1	KEGG: pde:Pden_0482 SpoVT/AbrB domain-containing protein; PFAM: Transcription regulator AbrB/SpoV, predicted; SMART: Transcription regulator AbrB/SpoV, predicted
YP_005718025.1	PFAM: HTH transcriptional regulator, LysR; LysR, substrate-binding; KEGG: smd:Smed_5812 LysR family transcriptional regulator
YP_005718027.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: rle:pRL100447 LysR family transcriptional regulator
YP_005718028.1	KEGG: rlt:Rleg2_4576 putative oxidoreductase; manually curated; PFAM: NADP-dependent oxidoreductase domain
YP_005718029.1	PFAM: 4-oxalocrotonate tautomerase; KEGG: ret:RHE_PF00143 putative tautomerase protein
YP_005718030.1	PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: ret:RHE_PF00144 3-oxoacyl-[acyl-carrier-protein] reductase protein; SMART: Polyketide synthase/Fatty acid synthase, KR
YP_005718031.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: ret:RHE_PF00145 LysR family transcriptional regulator
YP_005718032.1	KEGG: smd:Smed_3631 hypothetical protein
YP_005718033.1	KEGG: smd:Smed_5733 GCN5-related N-acetyltransferase
YP_005718034.1	KEGG: bbt:BBta_6006 hypothetical protein
YP_005718035.1	KEGG: bmt:BSUIS_B0280 hypothetical protein; PFAM: FMN-binding; SMART: FMN-binding
YP_005718036.1	HAMAP: Nitrous-oxide reductase; KEGG: oan:Oant_4346 nitrous-oxide reductase; PFAM: Cytochrome c oxidase subunit II C-terminal
YP_005718037.1	TIGRFAM: Parallel beta-helix repeat-2; PFAM: Periplasmic copper-binding; KEGG: oan:Oant_4345 periplasmic copper-binding; SMART: Carbohydrate-binding/sugar hydrolysis domain; Parallel beta-helix repeat
YP_005718038.1	KEGG: oan:Oant_4344 ABC transporter related; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core
YP_005718039.1	PFAM: ABC-2 type transporter; KEGG: oan:Oant_4343 NosY, nitrous-oxide reductase, NosY component
YP_005718040.1	PFAM: Nitrous oxide reductase accessory protein NosL; KEGG: bov:BOV_A0255 putative protein disulfide isomerase NosL
YP_005718041.1	PFAM: Thiamine synthesis ApbE/UPF0280; KEGG: rpb:RPB_3147 twin-arginine translocation pathway signal
YP_005718042.1	KEGG: smd:Smed_5247 nitric oxide dioxygenase; PFAM: Oxidoreductase FAD/NAD(P)-binding; Oxidoreductase, FAD-binding domain; Globin, subset
YP_005718043.1	KEGG: rlg:Rleg_5036 hypothetical protein
YP_005718044.1	PFAM: NnrS; KEGG: pde:Pden_4044 NnrS family protein
YP_005718045.1	KEGG: rsq:Rsph17025_2399 hypothetical protein; TIGRFAM: Iron-sulfur cluster repair di-iron protein; PFAM: Domain of unknown function DUF542, ScdA N-terminal; Haemerythrin/HHE cation-binding motif
YP_005718046.1	PFAM: Copper resistance protein CopC, core; Copper resistance D; KEGG: mlo:mll3323 hypothetical protein
YP_005718047.1	PFAM: GLE1, N-terminal, bacteria; KEGG: rhi:NGR_b06120 hypothetical protein
YP_005718048.1	manually curated; KEGG: smd:Smed_5917 hypothetical protein
YP_005718049.1	KEGG: smd:Smed_5927 cyclic nucleotide-binding protein; PFAM: Cyclic nucleotide-binding domain; SMART: Cyclic nucleotide-binding domain; HTH transcriptional regulator, Crp
YP_005718050.1	KEGG: smd:Smed_5928 cytochrome oxidase maturation protein, cbb3-type; TIGRFAM: Cytochrome oxidase maturation protein cbb3-type; PFAM: Cytochrome oxidase maturation protein cbb3-type
YP_005718051.1	TIGRFAM: ATPase, P type, cation/copper-transporter; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; ATPase, P-type, heavy metal translocating; KEGG: smd:Smed_5929 copper-translocating P-type ATPase; PFAM: ATPase, P-type, ATPase-associated domain; Haloacid dehalogenase-like hydrolase
YP_005718052.1	PFAM: FixH; KEGG: smd:Smed_5930 FixH family protein
YP_005718053.1	TIGRFAM: Cytochrome c oxidase cbb3 type, accessory protein FixG; KEGG: smd:Smed_5931 cytochrome c oxidase cbb3 type accessory protein FixG
YP_005718054.1	KEGG: smd:Smed_6265 cytochrome c oxidase, cbb3-type, subunit III; TIGRFAM: Cytochrome c oxidase cbb3-type, subunit III; PFAM: Cytochrome c, class I
YP_005718055.1	KEGG: smd:Smed_6266 Cbb3-type cytochrome oxidase component
YP_005718056.1	KEGG: smd:Smed_6267 cbb3-type cytochrome c oxidase subunit II; TIGRFAM: Cytochrome c oxidase, monohaem subunit/FixO; PFAM: Cytochrome c oxidase, monohaem subunit/FixO
YP_005718057.1	TIGRFAM: Cytochrome c oxidase cbb3-type, subunit I; KEGG: smd:Smed_6268 cbb3-type cytochrome c oxidase subunit I; PFAM: Cytochrome c oxidase, subunit I
YP_005718058.1	PFAM: Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain; KEGG: smd:Smed_6269 pyridoxamine 5'-phosphate oxidase-related FMN-binding
YP_005718059.1	KEGG: smd:Smed_6270 transcriptional regulator FixK; PFAM: HTH transcriptional regulator, Crp; Cyclic nucleotide-binding domain; SMART: HTH transcriptional regulator, Crp; Cyclic nucleotide-binding domain
YP_005718060.1	KEGG: smd:Smed_5937 response regulator receiver protein
YP_005718061.1	KEGG: smd:Smed_6273 response regulator FixJ; PFAM: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal; SMART: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal
YP_005718062.1	TIGRFAM: PAS; PFAM: ATPase-like, ATP-binding domain; PAS fold; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; KEGG: smd:Smed_6274 multi-sensor signal transduction histidine kinase; SMART: ATPase-like, ATP-binding domain; PAS; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain
YP_005718063.1	PFAM: UspA; KEGG: rhi:NGR_c09750 putative universal stress protein
YP_005718064.1	KEGG: smd:Smed_5182 NapC/NirT family periplasmic nitrate (or nitrite) reductase C-type cytochrome; TIGRFAM: Periplasmic nitrate reductase c-type cytochrome, NapC/NirT; PFAM: NapC/NirT cytochrome c, N-terminal
YP_005718065.1	PFAM: Nitrate reductase cytochrome c-type subunit (NapB); KEGG: rhi:NGR_c10030 NapB periplasmic nitrate reductase
YP_005718066.1	KEGG: smd:Smed_5180 nitrate reductase catalytic subunit; PFAM: Molybdopterin oxidoreductase; Molybdopterin oxidoreductase, Fe4S4 domain; Molydopterin dinucleotide-binding domain; TIGRFAM: Nitrate reductase, large subunit, periplasmic; Twin-arginine translocation pathway, signal sequence; HAMAP: Nitrate reductase, large subunit, periplasmic; SMART: Molybdopterin oxidoreductase, Fe4S4 domain
YP_005718067.1	PFAM: Chaperone NapD, nitrate reductase assembly; KEGG: smd:Smed_5179 NapD family protein
YP_005718068.1	KEGG: smd:Smed_5178 ferredoxin-type protein NapF; TIGRFAM: Ferredoxin-type protein NapF; PFAM: 4Fe-4S binding domain
YP_005718069.1	KEGG: smd:Smed_5177 periplasmic nitrate reductase NapE; TIGRFAM: Nitrate reductas, NapE, periplasmic; PFAM: Nitrate/trimethylamine N-oxide reductase NapE/TorE
YP_005718070.1	KEGG: smd:Smed_6275 pseudoazurin; TIGRFAM: Pseudoazurin; PFAM: Blue (type 1) copper domain
YP_005718071.1	KEGG: smd:Smed_6276 CRP/FNR family transcriptional regulator; PFAM: Cyclic nucleotide-binding domain; HTH transcriptional regulator, Crp; SMART: Cyclic nucleotide-binding domain; HTH transcriptional regulator, Crp
YP_005718072.1	PFAM: Sulphatase-modifying factor; KEGG: smd:Smed_6277 hypothetical protein
YP_005718073.1	TIGRFAM: Nitrite reductase, copper containing; Twin-arginine translocation pathway, signal sequence; KEGG: smd:Smed_6278 nitrite reductase, copper-containing; PFAM: Multicopper oxidase, type 1; Multicopper oxidase, type 3
YP_005718074.1	PFAM: NnrS; KEGG: smd:Smed_6279 NnrS family protein
YP_005718075.1	PFAM: Domain of unknown function DUF59; KEGG: smd:Smed_6280 hypothetical protein
YP_005718076.1	KEGG: smd:Smed_6281 hypothetical protein
YP_005718077.1	KEGG: smd:Smed_6282 hypothetical protein
YP_005718078.1	PFAM: Protein of unknown function DUF2249; KEGG: smd:Smed_6283 hypothetical protein
YP_005718079.1	PFAM: Pirin, N-terminal; KEGG: rlg:Rleg_6657 pirin domain protein
YP_005718080.1	TIGRFAM: Oxygen-independent coproporphyrinogen III oxidase HemN; PFAM: HemN, C-terminal; Radical SAM; KEGG: smd:Smed_6285 coproporphyrinogen III oxidase; SMART: Elongator protein 3/MiaB/NifB
YP_005718081.1	KEGG: smd:Smed_6286 von Willebrand factor type A; PFAM: von Willebrand factor, type A; SMART: von Willebrand factor, type A
YP_005718082.1	PFAM: ATPase, AAA-5; CbbQ/NirQ/NorQ C-terminal; KEGG: smd:Smed_6287 ATPase
YP_005718083.1	KEGG: smd:Smed_6288 nitric-oxide reductase; PFAM: Cytochrome c oxidase, subunit I
YP_005718084.1	PFAM: Cytochrome c, class I; KEGG: rhi:NGR_c09850 nitric-oxide reductase subunit C
YP_005718085.1	KEGG: smd:Smed_6290 hypothetical protein
YP_005718086.1	PFAM: Cytochrome c oxidase, subunit III; KEGG: smd:Smed_6291 cytochrome c oxidase subunit III
YP_005718087.1	KEGG: smd:Smed_6292 hypothetical protein
YP_005718088.1	KEGG: smd:Smed_6293 hypothetical protein
YP_005718089.1	KEGG: smd:Smed_6294 NnrU family protein
YP_005718090.1	KEGG: smd:Smed_6295 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; TIGRFAM: Phenylacrylic acid decarboxylase; PFAM: Flavoprotein
YP_005718091.1	KEGG: smd:Smed_6296 UbiD family decarboxylase; TIGRFAM: Carboxylyase-related; PFAM: Carboxylyase-related
YP_005718092.1	KEGG: smd:Smed_6297 hypothetical protein
YP_005718093.1	PFAM: Peptidase U32; KEGG: smd:Smed_6298 peptidase U32
YP_005718094.1	PFAM: Peptidase U32; KEGG: rhi:NGR_c09780 putative protease
YP_005718095.1	KEGG: smd:Smed_6300 hypothetical protein
YP_005718096.1	KEGG: rhi:NGR_c03790 alcohol dehydrogenase, zinc-binding domain protein; PFAM: Alcohol dehydrogenase, C-terminal; Alcohol dehydrogenase GroES-like; SMART: Polyketide synthase, enoylreductase
YP_005718097.1	PFAM: Protein of unknown function DUF1275; KEGG: rlg:Rleg_4372 protein of unknown function DUF1275
YP_005718098.1	PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: rec:RHECIAT_CH0002906 probable transcriptional regulator protein, TetR family
YP_005718099.1	PFAM: Major facilitator superfamily MFS-1; KEGG: rec:RHECIAT_CH0002907 putative antibiotic resistance permease protein
YP_005718100.1	TIGRFAM: ATPase, P-type DNA transfer, VirB11; PFAM: Type II secretion system protein E; KEGG: ret:RHE_PD00153 transport secretion system IV, VirB11 protein; SMART: ATPase, AAA+ type, core
YP_005718101.1	PFAM: Type IV secretion system, VirB10 / TraB / TrbI; KEGG: atu:Atu5171 type IV secretion protein AvhB10
YP_005718102.1	KEGG: rec:RHECIAT_PB0000167 transport secretion system IV protein, VirB9; TIGRFAM: P-type conjugative transfer protein VirB9; PFAM: Conjugal transfer, TrbG/VirB9/CagX
YP_005718103.1	PFAM: VirB8; KEGG: rec:RHECIAT_PC0000903 transport secretion system IV protein, VirB8
YP_005718104.1	KEGG: xau:Xaut_5082 putative type IV secretion system protein VirB7
YP_005718105.1	PFAM: Conjugal transfer, TrbL/VirB6; KEGG: rec:RHECIAT_PB0000164 transport secretion system IV protein, VirB6
YP_005718106.1	KEGG: rec:RHECIAT_PC0000906 hypothetical protein
YP_005718107.1	KEGG: atu:Atu5166 type IV secretion protein AvhB5; TIGRFAM: P-type DNA transfer protein VirB5; PFAM: Type IV secretion system
YP_005718108.1	TIGRFAM: CagE, TrbE, VirB component of type IV transporter system; PFAM: CagE, TrbE, VirB component of type IV transporter system, central domain; KEGG: xau:Xaut_5086 type IV secretion/conjugal transfer ATPase; SMART: ATPase, AAA+ type, core
YP_005718109.1	PFAM: Type IV secretion system, VirB3 / TrbD / AvhB; KEGG: atu:Atu5164 type IV secretion protein AvhB3
YP_005718110.1	PFAM: Conjugal transfer,TrbC; KEGG: atu:Atu5163 type IV secretion protein AvhB2
YP_005718111.1	KEGG: ret:RHE_PD00143 transport secretion system IV, VirB1 protein
YP_005718112.1	KEGG: ret:RHE_PD00142 hypothetical protein
YP_005718113.1	KEGG: rhi:NGR_b10230 hypothetical protein
YP_005718114.1	PFAM: Bacterial bifunctional deaminase-reductase, C-terminal; KEGG: smd:Smed_5058 deaminase-reductase domain-containing protein
YP_005718115.1	PFAM: Alpha/beta hydrolase fold-1; KEGG: smd:Smed_5059 alpha/beta hydrolase fold
YP_005718116.1	PFAM: General substrate transporter; KEGG: nha:Nham_0715 general substrate transporter
YP_005718117.1	PFAM: Peptidase M24, structural domain; Creatinase; KEGG: smd:Smed_5853 peptidase M24
YP_005718118.1	PFAM: Cupin 2, conserved barrel; KEGG: smd:Smed_5854 cupin 2 domain-containing protein
YP_005718119.1	PFAM: TIM-barrel signal transduction protein, predicted; KEGG: smd:Smed_5855 hypothetical protein
YP_005718120.1	KEGG: smd:Smed_5856 hypothetical protein; HAMAP: Uncharacterised protein family UPF0261; PFAM: Uncharacterised protein family UPF0261
YP_005718121.1	KEGG: smd:Smed_5857 TetR family transcriptional regulator; manually curated; PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal
YP_005718122.1	PFAM: Bacterial extracellular solute-binding, family 1; KEGG: smd:Smed_5858 extracellular solute-binding protein
YP_005718123.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_5859 binding-protein-dependent transport systems inner membrane component
YP_005718124.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_5860 binding-protein-dependent transport systems inner membrane component
YP_005718125.1	KEGG: smd:Smed_5861 hypothetical protein
YP_005718126.1	PFAM: ABC transporter-like; Transport-associated OB, type 1; KEGG: smd:Smed_5862 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_005718127.1	PFAM: ABC transporter-like; Transport-associated OB, type 2; KEGG: smd:Smed_5863 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_005718128.1	KEGG: smd:Smed_5864 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
YP_005718129.1	KEGG: smd:Smed_5865 GntR domain-containing protein; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: GntR, C-terminal; HTH transcriptional regulator, GntR
YP_005718130.1	PFAM: Mandelate racemase/muconate lactonizing enzyme, C-terminal; Mandelate racemase/muconate lactonizing enzyme, N-terminal; KEGG: smd:Smed_5866 mandelate racemase/muconate lactonizing protein; SMART: Mandelate racemase/muconate lactonizing enzyme, C-terminal
YP_005718131.1	PFAM: Xylose isomerase, TIM barrel domain; KEGG: smd:Smed_5867 xylose isomerase domain-containing protein
YP_005718132.1	PFAM: Xylose isomerase, TIM barrel domain; KEGG: smd:Smed_5868 xylose isomerase domain-containing protein
YP_005718133.1	PFAM: Domain of unknown function DUF1206; KEGG: rec:RHECIAT_PC0000073 hypothetical protein
YP_005718134.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: smd:Smed_5267 glyoxalase/bleomycin resistance protein/dioxygenase
YP_005718135.1	SMART: Helix-turn-helix, AraC type, DNA binding domain; KEGG: smd:Smed_5231 helix-turn-helix domain-containing protein
YP_005718136.1	KEGG: smd:Smed_5230 beta-lactamase domain-containing protein; PFAM: Beta-lactamase-like; SMART: Beta-lactamase-like
YP_005718137.1	KEGG: smd:Smed_1340 hypothetical protein
YP_005718138.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: tra:Trad_2877 binding-protein-dependent transport systems inner membrane component
YP_005718139.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: msv:Mesil_2791 binding-protein-dependent transport systems inner membrane component
YP_005718140.1	PFAM: Bacterial extracellular solute-binding, family 1; KEGG: mrb:Mrub_0630 extracellular solute-binding protein family 1
YP_005718141.1	PFAM: Oligopeptide/dipeptide ABC transporter, C-terminal; KEGG: smd:Smed_5077 ABC transporter related
YP_005718142.1	KEGG: smd:Smed_5061 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR
YP_005718143.1	PFAM: Protein of unknown function DUF81; KEGG: smd:Smed_5062 hypothetical protein
YP_005718144.1	SMART: ATPase, AAA+ type, core; TIGRFAM: Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal; KEGG: smd:Smed_5063 oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: Oligopeptide/dipeptide ABC transporter, C-terminal; ABC transporter-like
YP_005718145.1	SMART: ATPase, AAA+ type, core; TIGRFAM: Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal; KEGG: smd:Smed_5064 oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter-like; Oligopeptide/dipeptide ABC transporter, C-terminal
YP_005718146.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_5065 binding-protein-dependent transport systems inner membrane component
YP_005718147.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_5066 binding-protein-dependent transport systems inner membrane component
YP_005718148.1	PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: smd:Smed_5067 extracellular solute-binding protein
YP_005718149.1	PFAM: Amidase; KEGG: smd:Smed_5068 amidase
YP_005718150.1	KEGG: smd:Smed_5069 hypothetical protein
YP_005718151.1	PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: smd:Smed_5070 extracellular solute-binding protein
YP_005718152.1	PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: smd:Smed_5071 BFD/(2Fe-2S)-binding domain-containing protein
YP_005718153.1	PFAM: Ferredoxin; KEGG: smd:Smed_5072 ferredoxin
YP_005718154.1	PFAM: FAD dependent oxidoreductase; KEGG: smd:Smed_5073 FAD dependent oxidoreductase
YP_005718155.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: smd:Smed_5074 LysR family transcriptional regulator
YP_005718156.1	KEGG: smd:Smed_2533 electron transfer flavoprotein alpha subunit; PFAM: Electron transfer flavoprotein, alpha subunit, C-terminal; Electron transfer flavoprotein, alpha/beta-subunit, N-terminal; SMART: Electron transfer flavoprotein, alpha/beta-subunit, N-terminal
YP_005718157.1	KEGG: smd:Smed_2532 electron transfer flavoprotein alpha/beta-subunit; PFAM: Electron transfer flavoprotein, alpha/beta-subunit, N-terminal; SMART: Electron transfer flavoprotein, alpha/beta-subunit, N-terminal
YP_005718158.1	PFAM: Xylose isomerase, TIM barrel domain; KEGG: rde:RD1_0502 hypothetical protein
YP_005718159.1	PFAM: Protein of unknown function DUF993; KEGG: rde:RD1_0503 hypothetical protein
YP_005718160.1	PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: rde:RD1_0504 3-ketoacyl-(acyl-carrier-protein) reductase; SMART: Polyketide synthase/Fatty acid synthase, KR
YP_005718161.1	KEGG: apt:APA01_05710 acyl-CoA dehydrogenase; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, central domain
YP_005718162.1	KEGG: rde:RD1_0506 oxidoreductase, putative; PFAM: NADP-dependent oxidoreductase domain
YP_005718163.1	KEGG: apt:APA01_05700 glycerate dehydrogenase; PFAM: MOFRL domain
YP_005718164.1	PFAM: Crotonase, core; KEGG: rde:RD1_0509 putative enoyl-CoA hydratase/isomerase family protein
YP_005718165.1	KEGG: rde:RD1_0510 propionate CoA-transferase; PFAM: Coenzyme A transferase; SMART: Coenzyme A transferase
YP_005718166.1	KEGG: rde:RD1_0511 2,5-diketo-D-gluconic acid reductase B, putative; PFAM: NADP-dependent oxidoreductase domain
YP_005718167.1	KEGG: rhi:NGR_b10150 hypothetical protein
YP_005718168.1	PFAM: Uncharacterised protein family UPF0156/MetJ /Arc repressor; KEGG: rle:pRL100012 hypothetical protein
YP_005718169.1	KEGG: gdj:Gdia_2223 glucose-methanol-choline oxidoreductase; PFAM: Glucose-methanol-choline oxidoreductase, N-terminal; Glucose-methanol-choline oxidoreductase, C-terminal
YP_005718170.1	KEGG: apt:APA01_05810 aldehyde/L-sorbosone dehydrogenase; PFAM: Aldehyde dehydrogenase domain
YP_005718171.1	KEGG: gdj:Gdia_2220 alcohol dehydrogenase GroES domain protein; PFAM: Alcohol dehydrogenase GroES-like; Alcohol dehydrogenase, C-terminal
YP_005718172.1	PFAM: ABC transporter permease; KEGG: bpy:Bphyt_4187 monosaccharide-transporting ATPase
YP_005718173.1	PFAM: ABC transporter-like; KEGG: bpy:Bphyt_4186 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_005718174.1	PFAM: ABC transporter permease; KEGG: bpy:Bphyt_4185 monosaccharide-transporting ATPase
YP_005718175.1	KEGG: gdj:Gdia_2379 hypothetical protein
YP_005718176.1	PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: rde:RD1_0515 TetR family transcriptional regulator
YP_005718177.1	PFAM: Alcohol dehydrogenase, C-terminal; KEGG: pjd:Pjdr2_5125 alcohol dehydrogenase zinc-binding domain protein
YP_005718178.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: azo:azo3874 hypothetical protein
YP_005718179.1	PFAM: ABC transporter-like; Oligopeptide/dipeptide ABC transporter, C-terminal; KEGG: smd:Smed_5077 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_005718180.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_5078 binding-protein-dependent transport systems inner membrane component
YP_005718181.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_5079 binding-protein-dependent transport systems inner membrane component
YP_005718182.1	PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: smd:Smed_5080 extracellular solute-binding protein
YP_005718183.1	PFAM: Dihydrodipicolinate synthetase; TIGRFAM: 5-dehydro-4-deoxyglucarate dehydratase; HAMAP: 5-dehydro-4-deoxyglucarate dehydratase; KEGG: smd:Smed_5081 5-dehydro-4-deoxyglucarate dehydratase
YP_005718184.1	KEGG: smd:Smed_5082 GntR domain-containing protein; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: HTH transcriptional regulator, GntR; GntR, C-terminal
YP_005718185.1	KEGG: smd:Smed_5246 hypothetical protein
YP_005718186.1	PFAM: Major facilitator superfamily MFS-1; KEGG: smd:Smed_5083 major facilitator transporter
YP_005718187.1	KEGG: ret:RHE_PB00086 hypothetical protein
YP_005718188.1	TIGRFAM: Thiolase; KEGG: smd:Smed_5096 acetyl-CoA acetyltransferase; PFAM: Thiolase, N-terminal; Thiolase, C-terminal
YP_005718189.1	KEGG: smd:Smed_5097 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR
YP_005718190.1	KEGG: smd:Smed_5098 helix-turn-helix domain-containing protein; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain
YP_005718191.1	PFAM: RES; KEGG: smd:Smed_5099 RES domain-containing protein
YP_005718192.1	KEGG: smd:Smed_5100 hypothetical protein
YP_005718193.1	PFAM: Malate/L-lactate dehydrogenase; KEGG: smd:Smed_5101 malate/L-lactate dehydrogenase
YP_005718194.1	PFAM: Mandelate racemase/muconate lactonizing enzyme, C-terminal; Mandelate racemase/muconate lactonizing enzyme, N-terminal; KEGG: smd:Smed_5102 mandelate racemase/muconate lactonizing protein; SMART: Mandelate racemase/muconate lactonizing enzyme, C-terminal
YP_005718195.1	PFAM: ABC-type glycine betaine transport system, substrate-binding domain; KEGG: smd:Smed_5103 substrate-binding region of ABC-type glycine betaine transport system
YP_005718196.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_5104 binding-protein-dependent transport systems inner membrane component
YP_005718197.1	SMART: ATPase, AAA+ type, core; TIGRFAM: Glycine betaine/L-proline transport ATP-binding subunit; KEGG: smd:Smed_5105 glycine betaine/L-proline ABC transporter, ATPase subunit; PFAM: ABC transporter-like; Cystathionine beta-synthase, core
YP_005718198.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_5106 binding-protein-dependent transport systems inner membrane component
YP_005718199.1	PFAM: Isochorismatase-like; KEGG: smd:Smed_5107 isochorismatase hydrolase
YP_005718200.1	PFAM: Peptidase M24, structural domain; Creatinase; KEGG: smd:Smed_5108 peptidase M24
YP_005718201.1	KEGG: smd:Smed_5109 AraC family transcriptional regulator; PFAM: HTH transcriptional regulator, AraC; ThiJ/PfpI; SMART: Helix-turn-helix, AraC type, DNA binding domain
YP_005718202.1	PFAM: Trimethylamine methyltransferase; KEGG: smd:Smed_5110 trimethylamine methyltransferase
YP_005718203.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: smd:Smed_5111 LysR family transcriptional regulator
YP_005718204.1	KEGG: smd:Smed_5112 FAD dependent oxidoreductase; PFAM: FAD dependent oxidoreductase; Glycine cleavage T-protein, C-terminal barrel; Glycine cleavage T-protein, N-terminal
YP_005718205.1	PFAM: Major facilitator superfamily MFS-1; KEGG: rle:pRL110158 putative transcription regulatory protein
YP_005718206.1	PFAM: Cytochrome c, class I; KEGG: azc:AZC_3276 putative C-type cytochrome
YP_005718207.1	KEGG: bbt:BBta_2288 putative isoquinoline 1-oxidoreductase beta subunit; PFAM: Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding
YP_005718208.1	KEGG: bbt:BBta_2287 isoquinoline 1-oxidoreductase alpha subunit; PFAM: [2Fe-2S]-binding; Ferredoxin
YP_005718209.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: bja:bll6530 transcriptional regulator
YP_005718210.1	KEGG: smd:Smed_1341 hypothetical protein
YP_005718211.1	KEGG: smd:Smed_5312 serine--pyruvate transaminase; PFAM: Aminotransferase, class V/Cysteine desulfurase
YP_005718212.1	PFAM: Glutathione S-transferase, N-terminal; KEGG: smd:Smed_5869 glutathione S-transferase domain-containing protein
YP_005718213.1	KEGG: smd:Smed_5870 ferredoxin; PFAM: Ferredoxin; Rieske [2Fe-2S] iron-sulphur domain; Oxidoreductase FAD/NAD(P)-binding
YP_005718214.1	KEGG: smd:Smed_5871 hypothetical protein
YP_005718215.1	KEGG: mms:mma_1671 hypothetical protein
YP_005718216.1	KEGG: smd:Smed_5872 GntR family transcriptional regulator; PFAM: HTH transcriptional regulator, GntR; GntR, C-terminal; SMART: HTH transcriptional regulator, GntR; GntR, C-terminal
YP_005718217.1	PFAM: Basic membrane lipoprotein; Twin-arginine translocation pathway, signal sequence, bacterial/archaeal; KEGG: smd:Smed_5873 basic membrane lipoprotein
YP_005718218.1	PFAM: ABC transporter-like; KEGG: smd:Smed_5874 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_005718219.1	PFAM: ABC transporter permease; KEGG: smd:Smed_5875 inner-membrane translocator
YP_005718220.1	PFAM: ABC transporter permease; KEGG: smd:Smed_5876 inner-membrane translocator
YP_005718221.1	KEGG: rhi:NGR_b02550 hypothetical protein
YP_005718222.1	KEGG: smd:Smed_3614 NADH dehydrogenase (quinone); PFAM: NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H
YP_005718223.1	PFAM: 4Fe-4S binding domain; TIGRFAM: NADH-quinone oxidoreductase, chain I; HAMAP: NADH-quinone oxidoreductase, chain I; KEGG: smd:Smed_3615 NADH-quinone oxidoreductase, chain I
YP_005718224.1	KEGG: smd:Smed_3616 signal-transduction protein; PFAM: Cystathionine beta-synthase, core; SMART: Cystathionine beta-synthase, core
YP_005718225.1	PFAM: Molybdopterin oxidoreductase; Molydopterin dinucleotide-binding domain; NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding; Molybdopterin oxidoreductase, Fe4S4 domain; KEGG: smd:Smed_3617 molybdopterin oxidoreductase; SMART: NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding; Molybdopterin oxidoreductase, Fe4S4 domain
YP_005718226.1	SMART: NADH ubiquinone oxidoreductase, F subunit, iron sulphur binding; TIGRFAM: NADH ubiquinone oxidoreductase, F subunit; KEGG: smd:Smed_3618 NADH-quinone oxidoreductase, F subunit; PFAM: NADH:ubiquinone oxidoreductase, 51kDa subunit; NADH ubiquinone oxidoreductase, F subunit, iron sulphur binding; Soluble ligand binding domain
YP_005718227.1	TIGRFAM: NADH:ubiquinone oxidoreductase, 24kDa subunit; KEGG: smd:Smed_3619 NADH-quinone oxidoreductase, E subunit; PFAM: NADH:ubiquinone oxidoreductase, 24kDa subunit
YP_005718228.1	TIGRFAM: NADH dehydrogenase I, subunit D; KEGG: smd:Smed_3620 NADH dehydrogenase I, D subunit; PFAM: NADH-quinone oxidoreductase, subunit D
YP_005718229.1	TIGRFAM: NADH dehydrogenase, subunit C; HAMAP: NADH dehydrogenase, subunit C; KEGG: smd:Smed_3621 NADH (or F420H2) dehydrogenase, subunit C; PFAM: NADH:ubiquinone oxidoreductase, 30kDa subunit
YP_005718230.1	PFAM: NADH:ubiquinone oxidoreductase-like, 20kDa subunit; TIGRFAM: NADH-ubiquinone oxidoreductase, 20 Kd subunit; HAMAP: NADH-ubiquinone oxidoreductase, 20 Kd subunit; KEGG: smd:Smed_3622 NADH dehydrogenase subunit B
YP_005718231.1	KEGG: smd:Smed_3623 NADH-ubiquinone/plastoquinone oxidoreductase chain 3; HAMAP: NAD(P)H-quinone oxidoreductase subunit 3, bacterial/plastid; PFAM: NADH:ubiquinone/plastoquinone oxidoreductase, chain 3
YP_005718232.1	TIGRFAM: NAD(P)H-quinone oxidoreductase, subunit N/subunit 2; KEGG: smd:Smed_3624 proton-translocating NADH-quinone oxidoreductase, chain N; PFAM: NADH:ubiquinone/plastoquinone oxidoreductase
YP_005718233.1	TIGRFAM: NADH-quinone oxidoreductase, chain M/4; KEGG: smd:Smed_3625 proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH:ubiquinone/plastoquinone oxidoreductase
YP_005718234.1	KEGG: smd:Smed_3626 putative monovalent cation/H+ antiporter subunit D; PFAM: NADH:ubiquinone/plastoquinone oxidoreductase
YP_005718235.1	KEGG: smd:Smed_3627 hypothetical protein
YP_005718236.1	KEGG: smd:Smed_3628 putative monovalent cation/H+ antiporter subunit D; PFAM: NADH:ubiquinone/plastoquinone oxidoreductase
YP_005718237.1	KEGG: smd:Smed_3629 NADH-ubiquinone oxidoreductase chain 4L; HAMAP: NADH-ubiquinone oxidoreductase chain 4L/K; PFAM: NADH-ubiquinone oxidoreductase chain 4L/K
YP_005718238.1	PFAM: NADH:ubiquinone/plastoquinone oxidoreductase, chain 6; KEGG: smd:Smed_3630 NADH-ubiquinone/plastoquinone oxidoreductase chain 6
YP_005718239.1	PFAM: Protein-L-isoaspartate(D-aspartate) O-methyltransferase; TIGRFAM: Protein-L-isoaspartate(D-aspartate) O-methyltransferase; HAMAP: Protein-L-isoaspartate(D-aspartate) O-methyltransferase; KEGG: rhi:NGR_c14200 probable protein-L-isoaspartate(D-aspartate) O-methyltransferase
YP_005718240.1	TIGRFAM: Diguanylate cyclase, predicted; PAS; PFAM: Diguanylate phosphodiesterase, EAL domain; PAS fold-4; Diguanylate cyclase, predicted; PAS fold-3; KEGG: smd:Smed_5113 diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s); SMART: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; PAS; PAC motif
YP_005718241.1	KEGG: smd:Smed_5114 two component LuxR family transcriptional regulator; PFAM: Transcription regulator LuxR, C-terminal; Signal transduction response regulator, receiver domain; SMART: Transcription regulator LuxR, C-terminal; Signal transduction response regulator, receiver domain
YP_005718242.1	PFAM: MCP methyltransferase, CheR-type, SAM-binding domain, C-terminal; KEGG: smd:Smed_5115 protein-glutamate O-methyltransferase; SMART: MCP methyltransferase, CheR-type
YP_005718243.1	KEGG: smd:Smed_5116 putative CheW protein; PFAM: CheW-like protein; SMART: CheW-like protein
YP_005718244.1	KEGG: smd:Smed_5117 methyl-accepting chemotaxis sensory transducer; PFAM: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain; SMART: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain
YP_005718245.1	KEGG: smd:Smed_5118 CheA signal transduction histidine kinase; PFAM: Signal transduction response regulator, receiver domain; CheW-like protein; ATPase-like, ATP-binding domain; Signal transduction histidine kinase, phosphotransfer (Hpt) domain; SMART: Signal transduction response regulator, receiver domain; Signal transduction histidine kinase, phosphotransfer (Hpt) domain; ATPase-like, ATP-binding domain; CheW-like protein
YP_005718246.1	HAMAP: Signal transduction response regulator, chemotaxis, CheB; KEGG: smd:Smed_5119 response regulator receiver modulated CheB methylesterase; PFAM: Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase
YP_005718247.1	PFAM: Type II secretion system F domain; KEGG: smd:Smed_5120 type II secretion system protein
YP_005718248.1	PFAM: Type II secretion system F domain; KEGG: smd:Smed_5121 type II secretion system protein
YP_005718249.1	PFAM: Type II secretion system protein E; KEGG: smd:Smed_5122 type II secretion system protein E
YP_005718250.1	PFAM: Flp/Fap pilin component; KEGG: smd:Smed_5123 Flp/Fap pilin component
YP_005718251.1	PFAM: TadE-like; KEGG: smd:Smed_5124 TadE family protein
YP_005718252.1	PFAM: TadE-like; Cobyrinic acid a,c-diamide synthase; Signal transduction response regulator, receiver domain; KEGG: smd:Smed_5125 response regulator receiver protein
YP_005718253.1	TIGRFAM: Pilus assembly, Flp-type CpaB; PFAM: SAF domain; KEGG: smd:Smed_5126 SAF domain-containing protein; SMART: SAF domain
YP_005718254.1	PFAM: Peptidase A24A, prepilin type IV; KEGG: smd:Smed_5127 peptidase A24A prepilin type IV
YP_005718255.1	PFAM: Protein of unknown function DUF2134, membrane; KEGG: smd:Smed_5128 hypothetical protein
YP_005718256.1	KEGG: smd:Smed_5129 hypothetical protein
YP_005718257.1	PFAM: Mechanosensitive ion channel MscS; KEGG: smd:Smed_4436 MscS mechanosensitive ion channel
YP_005718258.1	PFAM: Adenylyl cyclase class-3/4/guanylyl cyclase; Tetratricopeptide TPR-1; KEGG: mlo:mll3276 adenylate cyclase Cya3; SMART: Tetratricopeptide repeat; Adenylyl cyclase class-3/4/guanylyl cyclase
YP_005718259.1	KEGG: aca:ACP_0351 hypothetical protein
YP_005718260.1	PFAM: Transposase IS3/IS911family; KEGG: rhi:NGR_b01500 probable SyrB-like regulator
YP_005718261.1	PFAM: Glycoside hydrolase, family 16; Haemolysin-type calcium-binding repeat; KEGG: rhi:NGR_b15690 endo-1,3-1,4-beta-glycanase ExsH
YP_005718262.1	KEGG: smd:Smed_3955 hypothetical protein
YP_005718263.1	PFAM: Protein of unknown function DUF1486; KEGG: avi:Avi_1135 hypothetical protein
YP_005718264.1	KEGG: smd:Smed_1683 sterile alpha motif-containing protein; PFAM: Adenylyl cyclase class-3/4/guanylyl cyclase; Sterile alpha motif, type 1; SMART: Adenylyl cyclase class-3/4/guanylyl cyclase; Sterile alpha motif domain
YP_005718265.1	PFAM: FAD dependent oxidoreductase; Rieske [2Fe-2S] iron-sulphur domain; KEGG: rhi:NGR_b12550 putative oxidoreductase
YP_005718266.1	KEGG: rhi:NGR_b02960 probable methyltransferase
YP_005718267.1	KEGG: smd:Smed_5510 putative fimbrial chaperone protein
YP_005718268.1	PFAM: Cation/H+ exchanger; Regulator of K+ conductance, N-terminal; KEGG: rva:Rvan_2259 potassium efflux system protein
YP_005718269.1	KEGG: smd:Smed_6327 LysR family transcriptional regulator; manually curated; PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR
YP_005718270.1	KEGG: smd:Smed_6328 NADH:flavin oxidoreductase/NADH oxidase; PFAM: NADH:flavin oxidoreductase/NADH oxidase, N-terminal
YP_005718271.1	KEGG: rlg:Rleg_2547 transcriptional regulator, LysR family; manually curated; PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR
YP_005718272.1	PFAM: Protein of unknown function DUF924; KEGG: vap:Vapar_2217 protein of unknown function DUF924
YP_005718273.1	KEGG: rle:pRL120292 short chain dehydrogenase; PFAM: Short-chain dehydrogenase/reductase SDR
YP_005718274.1	KEGG: smd:Smed_0367 hypothetical protein
YP_005718275.1	KEGG: smd:Smed_0366 LysR family transcriptional regulator; manually curated; PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR
YP_005718276.1	KEGG: rlg:Rleg_5863 hypothetical protein
YP_005718277.1	KEGG: smd:Smed_5303 hypothetical protein
YP_005718278.1	KEGG: smd:Smed_5302 hypothetical protein
YP_005718279.1	PFAM: Transposase, IS4-like; Transposase InsH, N-terminal; KEGG: rle:pRL70077 putative transposase
YP_005718280.1	KEGG: smd:Smed_5613 hypothetical protein
YP_005718281.1	PFAM: Protein of unknown function DUF156; KEGG: smd:Smed_5612 hypothetical protein
YP_005718282.1	KEGG: smd:Smed_5611 major facilitator transporter; TIGRFAM: Drug antiporter protein; PFAM: Major facilitator superfamily MFS-1
YP_005718283.1	PFAM: Nickel/cobalt transporter, high-affinity; KEGG: smd:Smed_5609 high-affinity nickel-transporter
YP_005718284.1	SMART: ATPase, AAA+ type, core; TIGRFAM: Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal; KEGG: smd:Smed_5623 oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter-like; Oligopeptide/dipeptide ABC transporter, C-terminal
YP_005718285.1	SMART: ATPase, AAA+ type, core; TIGRFAM: Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal; KEGG: smd:Smed_5622 oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: Oligopeptide/dipeptide ABC transporter, C-terminal; ABC transporter-like
YP_005718286.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_5621 binding-protein-dependent transport systems inner membrane component
YP_005718287.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_5620 binding-protein-dependent transport systems inner membrane component
YP_005718288.1	PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: smd:Smed_5619 extracellular solute-binding protein
YP_005718289.1	KEGG: bbt:BBta_3768 putative hydantoin-racemase; PFAM: Asp/Glu/hydantoin racemase
YP_005718290.1	KEGG: atu:Atu4703 hypothetical protein; PFAM: Flavin reductase-like, FMN-binding; SMART: Flavin reductase-like, FMN-binding
YP_005718291.1	KEGG: smd:Smed_5617 GntR family transcriptional regulator; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: HTH transcriptional regulator, GntR; GntR, C-terminal
YP_005718293.1	PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: smd:Smed_5244 GCN5-related N-acetyltransferase
YP_005718294.1	PFAM: Integrase, catalytic core; KEGG: smd:Smed_6420 integrase catalytic region
YP_005718295.1	KEGG: rec:RHECIAT_PB0000080 hypothetical protein
YP_005718296.1	PFAM: Protein of unknown function DUF1814; KEGG: mpo:Mpop_3057 protein of unknown function DUF1814
YP_005718297.1	KEGG: atu:Atu8099 hypothetical protein
YP_005718298.1	KEGG: atu:Atu5049 hypothetical protein; TIGRFAM: Ku, prokaryotic type; PFAM: DNA helicase, ATP-dependent, Ku type
YP_005718299.1	PFAM: Protein of unknown function DUF768
YP_005718300.1	KEGG: smd:Smed_5256 hypothetical protein
YP_005718301.1	manually curated
YP_005718302.1	KEGG: bsb:Bresu_2722 hypothetical protein
YP_005718303.1	KEGG: bsb:Bresu_2721 PilT protein, N-terminal
YP_005718304.1	PFAM: PRC-barrel; KEGG: azc:AZC_0981 hypothetical protein
YP_005718306.1	KEGG: cwo:Cwoe_3394 hypothetical protein
YP_005718307.1	KEGG: mva:Mvan_0239 hypothetical protein
YP_005718308.1	KEGG: rhi:NGR_c21790 putative transcriptional regulator, AsnC/Lrp family; PFAM: Transcription regulator AsnC-type, C-terminal; SMART: Transcription regulator AsnC-type
YP_005718309.1	PFAM: Methyltransferase type 11; KEGG: smd:Smed_5724 methyltransferase type 11
YP_005718310.1	KEGG: nda:Ndas_3483 phosphoglycerate mutase; PFAM: Histidine phosphatase superfamily, clade-1; SMART: Histidine phosphatase superfamily, clade-1
YP_005718311.1	PFAM: ABC transporter-like; KEGG: nda:Ndas_3482 ABC transporter related protein; SMART: ATPase, AAA+ type, core
YP_005718312.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: nda:Ndas_3481 binding-protein-dependent transport systems inner membrane component
YP_005718313.1	PFAM: Bacterial extracellular solute-binding, family 1; KEGG: nda:Ndas_3480 ABC-type Fe3+ transport system periplasmic component
YP_005718314.1	PFAM: Sugar isomerase (SIS); Helix-turn-helix protein RpiR; KEGG: nda:Ndas_3479 transcriptional regulator, RpiR family
YP_005718315.1	KEGG: avi:Avi_5036 hypothetical protein
YP_005718316.1	KEGG: ara:Arad_9669 6-phosphogluconatedehydrogenase protein; PFAM: 6-phosphogluconate dehydrogenase, NAD-binding
YP_005718317.1	KEGG: smd:Smed_5798 gluconate 5-dehydrogenase; PFAM: Short-chain dehydrogenase/reductase SDR
YP_005718318.1	PFAM: Alcohol dehydrogenase GroES-like; Alcohol dehydrogenase, C-terminal; KEGG: rhi:NGR_b22250 L-idonate 5-dehydrogenase protein; SMART: Polyketide synthase, enoylreductase
YP_005718319.1	KEGG: avi:Avi_5031 2-hydroxyacid dehydrogenase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
YP_005718320.1	PFAM: ABC transporter-like; KEGG: xau:Xaut_2441 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_005718321.1	KEGG: xau:Xaut_2440 polar amino acid ABC transporter, inner membrane subunit; TIGRFAM: Amino acid ABC transporter, permease protein, 3-TM domain, His/Glu/Gln/Arg/opine family; PFAM: Binding-protein-dependent transport systems inner membrane component
YP_005718322.1	KEGG: rhi:NGR_b22360 putative permease component of ABC transporter; TIGRFAM: Amino acid ABC transporter, permease protein, 3-TM domain, His/Glu/Gln/Arg/opine family; PFAM: Binding-protein-dependent transport systems inner membrane component
YP_005718323.1	KEGG: abi:Aboo_0222 metal dependent phosphohydrolase
YP_005718324.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: vap:Vapar_6072 transcriptional regulator, LysR family
YP_005718325.1	PFAM: YheO-like; KEGG: bvi:Bcep1808_0785 fis family transcriptional regulator
YP_005718326.1	KEGG: vha:VIBHAR_01550 hypothetical protein; PFAM: Extracellular solute-binding protein, family 3; SMART: Extracellular solute-binding protein, family 3; Ionotropic glutamate receptor; Glutamate receptor, L-glutamate/glycine-binding
YP_005718327.1	KEGG: mct:MCR_1694 amino acid ABC transporter permease protein; TIGRFAM: Amino acid ABC transporter, permease protein, 3-TM domain, His/Glu/Gln/Arg/opine family; PFAM: Binding-protein-dependent transport systems inner membrane component
YP_005718328.1	KEGG: ara:Arad_4800 ABC transporter membrane spanning protein (opine); TIGRFAM: Amino acid ABC transporter, permease protein, 3-TM domain, His/Glu/Gln/Arg/opine family; PFAM: Binding-protein-dependent transport systems inner membrane component
YP_005718329.1	PFAM: ABC transporter-like; KEGG: pmy:Pmen_3557 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_005718330.1	KEGG: ppw:PputW619_2675 ornithine cyclodeaminase; PFAM: Ornithine cyclodeaminase/mu-crystallin
YP_005718331.1	TIGRFAM: Threonine synthase; KEGG: gsu:GSU1695 threonine synthase; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit
YP_005718332.1	KEGG: smd:Smed_5476 histidinol-phosphate phosphatase, putative; TIGRFAM: Histidinol-phosphate phosphatase, putative, inositol monophosphatase; PFAM: Inositol monophosphatase
YP_005718333.1	KEGG: mch:Mchl_1781 protein of unknown function DUF1044
YP_005718334.1	PFAM: Helix-turn-helix type 3; KEGG: rlg:Rleg_7082 transcriptional regulator, XRE family
YP_005718335.1	PFAM: Integrase, catalytic core; KEGG: smd:Smed_6420 integrase catalytic region
YP_005718336.1	KEGG: sno:Snov_3610 amidohydrolase; PFAM: Amidohydrolase 1
YP_005718337.1	KEGG: sil:SPO2470 inosine-uridine preferring nucleoside hydrolase; PFAM: Inosine/uridine-preferring nucleoside hydrolase domain
YP_005718338.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: nca:Noca_4190 glyoxalase/bleomycin resistance protein/dioxygenase
YP_005718339.1	PFAM: ABC transporter permease; KEGG: drm:Dred_2766 inner-membrane translocator
YP_005718340.1	PFAM: ABC transporter permease; KEGG: rca:Rcas_1632 inner-membrane translocator
YP_005718341.1	PFAM: ABC transporter-like; KEGG: toc:Toce_0588 nucleoside ABC transporter ATP-binding protein; SMART: ATPase, AAA+ type, core
YP_005718342.1	PFAM: Basic membrane lipoprotein; KEGG: cwo:Cwoe_0635 basic membrane lipoprotein
YP_005718343.1	PFAM: NIPSNAP; KEGG: bpt:Bpet0744 hypothetical protein
YP_005718344.1	KEGG: pla:Plav_2644 choline dehydrogenase; PFAM: Glucose-methanol-choline oxidoreductase, N-terminal; Glucose-methanol-choline oxidoreductase, C-terminal
YP_005718345.1	PFAM: Uracil-DNA glycosylase-like; KEGG: smf:Smon_0949 uracil-DNA glycosylase superfamily
YP_005718346.1	PFAM: Transcription regulator YcdC, C-terminal; Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: pmy:Pmen_3699 TetR family transcriptional regulator
YP_005718347.1	KEGG: aex:Astex_2438 transposase IS116/is110/IS902 family protein
YP_005718348.1	KEGG: sno:Snov_3378 L-lactate dehydrogenase (cytochrome); PFAM: FMN-dependent dehydrogenase
YP_005718349.1	KEGG: smd:Smed_6307 hypothetical protein
YP_005718350.1	TIGRFAM: Histidine utilization repressor; PFAM: UbiC transcription regulator-associated; HTH transcriptional regulator, GntR; KEGG: smd:Smed_6308 GntR family transcriptional regulator; SMART: HTH transcriptional regulator, GntR; UbiC transcription regulator-associated
YP_005718351.1	KEGG: smd:Smed_6309 alcohol dehydrogenase; PFAM: Alcohol dehydrogenase GroES-like; Alcohol dehydrogenase, C-terminal
YP_005718352.1	TIGRFAM: Histidinol dehydrogenase, prokaryotic-type; KEGG: smd:Smed_6310 histidinol dehydrogenase; PFAM: Histidinol dehydrogenase, prokaryotic-type
YP_005718353.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_6311 binding-protein-dependent transport systems inner membrane component
YP_005718354.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_6312 binding-protein-dependent transport systems inner membrane component
YP_005718355.1	PFAM: Bacterial extracellular solute-binding, family 1; KEGG: smd:Smed_6313 ABC transporter, periplasmic solute-binding protein
YP_005718356.1	PFAM: ABC transporter-like; Transport-associated OB, type 2; KEGG: smd:Smed_6314 spermidine/putrescine ABC transporter ATPase subunit; SMART: ATPase, AAA+ type, core
YP_005718357.1	KEGG: smd:Smed_6315 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR
YP_005718358.1	TIGRFAM: Histidinol-phosphate aminotransferase; KEGG: smd:Smed_6316 histidinol-phosphate aminotransferase; PFAM: Aminotransferase, class I/classII
YP_005718360.1	PFAM: Major facilitator superfamily, enterobactin exporter EntS; KEGG: rlt:Rleg2_1670 protein of unknown function DUF894 DitE
YP_005718361.1	PFAM: Uncharacterised protein family YphA; KEGG: rlt:Rleg2_1669 DoxX family protein
YP_005718362.1	PFAM: Amidohydrolase 3; KEGG: rlt:Rleg2_1668 amidohydrolase 3
YP_005718363.1	KEGG: rlt:Rleg2_1667 protein of unknown function DUF1427; TIGRFAM: XapX domain; PFAM: Protein of unknown function DUF1427
YP_005718364.1	PFAM: Isochorismatase-like; KEGG: smd:Smed_4075 isochorismatase hydrolase
YP_005718365.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: rlt:Rleg2_1664 glyoxalase/bleomycin resistance protein/dioxygenase
YP_005718366.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: rec:RHECIAT_PC0000078 putative transcriptional regulator protein, LysR family
YP_005718368.1	KEGG: smd:Smed_2148 hypothetical protein
YP_005718369.1	KEGG: rhi:NGR_b22120 hypothetical protein
YP_005718370.1	PFAM: Polysaccharide export protein; KEGG: rhi:NGR_b22130 hypothetical protein
YP_005718371.1	KEGG: smd:Smed_5451 transposase IS204/IS1001/IS1096/IS1165 family protein; manually curated; PFAM: Transposase, IS204/IS1001/IS1096/IS1165
YP_005718372.1	KEGG: mes:Meso_4604 integrase catalytic subunit
YP_005718373.1	PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: oan:Oant_3517 GCN5-related N-acetyltransferase
YP_005718374.1	PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: sno:Snov_2036 short-chain dehydrogenase/reductase SDR; SMART: Polyketide synthase/Fatty acid synthase, KR
YP_005718375.1	PFAM: Uncharacterised protein family Atu4866; KEGG: hne:HNE_0020 hypothetical protein
YP_005718376.1	PFAM: Isochorismatase-like; KEGG: pap:PSPA7_3014 hydrolase
YP_005718377.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: smd:Smed_5229 LysR family transcriptional regulator
YP_005718378.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: smd:Smed_5229 LysR family transcriptional regulator
YP_005718379.1	PFAM: Pirin, N-terminal; Pirin, C-terminal; KEGG: smd:Smed_5228 pirin domain-containing protein
YP_005718380.1	PFAM: NADP oxidoreductase, coenzyme F420-dependent; KEGG: smd:Smed_5227 NADP oxidoreductase coenzyme F420-dependent
YP_005718381.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: hch:HCH_03119 transcriptional regulator
YP_005718382.1	KEGG: ilo:IL2192 NAD(P)H oxidoreductase; manually curated; PFAM: Flavodoxin-like fold
YP_005718384.1	TIGRFAM: Flavoprotein WrbA; HAMAP: Flavoprotein WrbA; KEGG: smd:Smed_5226 TrpR binding protein WrbA; PFAM: Flavodoxin/nitric oxide synthase
YP_005718385.1	KEGG: smd:Smed_5225 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR
YP_005718386.1	PFAM: Protein of unknown function DUF1486; KEGG: smd:Smed_5224 hypothetical protein
YP_005718387.1	KEGG: smd:Smed_5223 3-ketoacyl-(acyl-carrier-protein) reductase; PFAM: Short-chain dehydrogenase/reductase SDR
YP_005718388.1	PFAM: Uncharacterised protein family YphA; KEGG: smd:Smed_5222 DoxX family protein
YP_005718389.1	KEGG: smd:Smed_5220 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR
YP_005718390.1	PFAM: Antibiotic biosynthesis monooxygenase; KEGG: smd:Smed_5219 antibiotic biosynthesis monooxygenase
YP_005718391.1	PFAM: Protein of unknown function DUF1330; KEGG: smd:Smed_5218 hypothetical protein
YP_005718392.1	KEGG: smd:Smed_5217 flavin reductase domain-containing protein; PFAM: Flavin reductase-like, FMN-binding; SMART: Flavin reductase-like, FMN-binding
YP_005718393.1	KEGG: smd:Smed_5216 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR
YP_005718394.1	KEGG: smd:Smed_5215 helix-turn-helix domain-containing protein; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain
YP_005718396.1	PFAM: Carboxymuconolactone decarboxylase; KEGG: bge:BC1002_3270 carboxymuconolactone decarboxylase
YP_005718397.1	PFAM: Uncharacterised protein family Atu4866; KEGG: axy:AXYL_03686 hypothetical protein
YP_005718398.1	KEGG: mmw:Mmwyl1_0901 hypothetical protein
YP_005718399.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: smd:Smed_5891 LysR family transcriptional regulator
YP_005718400.1	KEGG: atu:Atu5085 metallo-beta-lactamase; PFAM: Beta-lactamase-like; SMART: Beta-lactamase-like
YP_005718401.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: atu:Atu5084 LysR family transcriptional regulator
YP_005718402.1	KEGG: bur:Bcep18194_B3018 phenylalanine/histidine ammonia-lyase; PFAM: Phenylalanine/histidine ammonia-lyase
YP_005718403.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: bra:BRADO0915 DNA-binding transcriptional activator GcvA
YP_005718404.1	PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: ara:Arad_8268 peptide ABC transporter
YP_005718405.1	KEGG: eca:ECA3961 hypothetical protein
YP_005718406.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: cmi:CMM_0232 putative peptide ABC transporter, permease component
YP_005718407.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: cms:CMS_0798A putative ABC transporter permease
YP_005718408.1	SMART: ATPase, AAA+ type, core; TIGRFAM: Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal; KEGG: apb:SAR116_0064 ABC transporter ATP-binding protein; PFAM: ABC transporter-like; Oligopeptide/dipeptide ABC transporter, C-terminal
YP_005718410.1	PFAM: Protein of unknown function DUF849, prokaryotic; KEGG: mlo:mll1845 hypothetical protein
YP_005718411.1	PFAM: Plasmid stabilisation system; KEGG: pau:PA14_63450 hypothetical protein
YP_005718412.1	manually curated; TIGRFAM: Putative addiction module antidote protein, CC2985; KEGG: rhi:NGR_b02240 hypothetical protein; PFAM: Uncharacterised protein family UPF0156/MetJ /Arc repressor
YP_005718413.1	PFAM: NUDIX hydrolase domain; KEGG: smd:Smed_6062 NUDIX hydrolase
YP_005718414.1	manually curated; KEGG: rhi:NGR_b23220 hypothetical protein
YP_005718415.1	KEGG: pol:Bpro_5170 AraC family transcriptional regulator; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain
YP_005718416.1	PFAM: Nitroreductase-like; KEGG: bge:BC1002_6415 nitroreductase
YP_005718417.1	PFAM: Carboxymuconolactone decarboxylase; KEGG: bge:BC1002_6414 carboxymuconolactone decarboxylase
YP_005718418.1	KEGG: pol:Bpro_5167 hypothetical protein
YP_005718419.1	PFAM: Alcohol dehydrogenase, C-terminal; Alcohol dehydrogenase GroES-like; KEGG: mno:Mnod_8441 alcohol dehydrogenase GroES domain protein
YP_005718420.1	PFAM: Transposase, IS4-like; Transposase InsH, N-terminal; KEGG: rle:pRL70077 putative transposase
YP_005718421.1	PFAM: Cupin 2, conserved barrel; KEGG: smd:Smed_4895 cupin 2 domain-containing protein
YP_005718422.1	PFAM: Integrase, catalytic core; KEGG: smd:Smed_6420 integrase catalytic region
YP_005718423.1	manually curated; KEGG: smd:Smed_5213 hypothetical protein
YP_005718424.1	PFAM: CsbD-like; KEGG: smd:Smed_4727 CsbD family protein
YP_005718425.1	KEGG: rhi:NGR_b12560 hypothetical protein
YP_005718426.1	KEGG: smd:Smed_5156 hypothetical protein
YP_005718427.1	PFAM: Uncharacterised protein family UPF0118; KEGG: rce:RC1_2451 hypothetical protein
YP_005718428.1	KEGG: rle:pRL120041 hypothetical protein
YP_005718430.1	KEGG: rle:RL1163 putative two-component sensor histidine kinase transcriptional regulatory protein; PFAM: Signal transduction histidine kinase, subgroup 2, dimerisation and phosphoacceptor domain; PAS fold; ATPase-like, ATP-binding domain; SMART: ATPase-like, ATP-binding domain; PAS; PAC motif
YP_005718431.1	KEGG: avi:Avi_1195 two component sensor kinase/response regulator hybrid protein; PFAM: Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain
YP_005718432.1	PFAM: CsbD-like; KEGG: atu:Atu0782 hypothetical protein
YP_005718433.1	KEGG: smd:Smed_4458 cold-shock DNA-binding domain-containing protein; PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein
YP_005718434.1	manually curated; KEGG: smd:Smed_4459 hypothetical protein
YP_005718435.1	KEGG: smd:Smed_4460 hypothetical protein
YP_005718436.1	manually curated; KEGG: msl:Msil_1603 DsbA oxidoreductase
YP_005718437.1	PFAM: Transposase, mutator type; KEGG: smd:Smed_6034 transposase mutator type
YP_005718438.1	KEGG: sno:Snov_0109 transcriptional regulator, AraC family; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain
YP_005718439.1	PFAM: Porin, alpha proteobacteria type; KEGG: atu:Atu2159 outer membrane protein
YP_005718440.1	TIGRFAM: Outer membrane autotransporter barrel; Autotransporter-associated beta strand repeat; PFAM: Autotransporter beta-domain; KEGG: oan:Oant_4722 outer membrane autotransporter; SMART: Autotransporter beta-domain
YP_005718441.1	KEGG: smd:Smed_6421 hypothetical protein
YP_005718442.1	KEGG: rhi:NGR_b07070 heat-responsive protein 12; TIGRFAM: YjgF-like protein; PFAM: Endoribonuclease L-PSP
YP_005718443.1	PFAM: Protein of unknown function DUF112, transmembrane; KEGG: xau:Xaut_1332 hypothetical protein
YP_005718444.1	KEGG: azc:AZC_3549 hypothetical protein
YP_005718445.1	KEGG: pol:Bpro_2293 hypothetical protein
YP_005718446.1	KEGG: rhi:NGR_b19690 hypothetical protein
YP_005718447.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: ara:Arad_14166 nopaline catabolism transcriptional regulator protein
YP_005718448.1	PFAM: Aldehyde dehydrogenase domain; KEGG: smd:Smed_4477 aldehyde dehydrogenase
YP_005718449.1	TIGRFAM: 5-dehydro-4-deoxyglucarate dehydratase; KEGG: atu:Atu3140 5-dehydro-4-deoxyglucarate dehydratase; PFAM: Dihydrodipicolinate synthetase
YP_005718450.1	KEGG: rhi:NGR_b03080 aspartate aminotransferase B; PFAM: Aminotransferase, class I/classII
YP_005718451.1	KEGG: rec:RHECIAT_PC0000815 probable 5-oxoprolinase (ATP-hydrolyzing) protein; PFAM: Hydantoinase B/oxoprolinase
YP_005718452.1	KEGG: rec:RHECIAT_PC0000816 probable 5-oxoprolinase (ATP-hydrolyzing) protein; PFAM: Hydantoinase/oxoprolinase; Hydantoinaseoxoprolinase, N-terminal
YP_005718453.1	KEGG: bja:bll6912 ABC transporter substrate-binding protein; PFAM: Extracellular solute-binding protein, family 3; SMART: Extracellular solute-binding protein, family 3
YP_005718454.1	KEGG: rec:RHECIAT_PC0000811 probable amino acid ABC transporter, permease protein; TIGRFAM: Amino acid ABC transporter, permease protein, 3-TM domain, His/Glu/Gln/Arg/opine family; PFAM: Binding-protein-dependent transport systems inner membrane component
YP_005718455.1	KEGG: rec:RHECIAT_PC0000812 probable amino acid ABC transporter, permease protein; TIGRFAM: Amino acid ABC transporter, permease protein, 3-TM domain, His/Glu/Gln/Arg/opine family; PFAM: Binding-protein-dependent transport systems inner membrane component
YP_005718456.1	PFAM: ABC transporter-like; KEGG: rec:RHECIAT_PC0000809 probable amino acid ABC transporter, ATP-binding protein; SMART: ATPase, AAA+ type, core
YP_005718457.1	PFAM: Endoribonuclease L-PSP; KEGG: rec:RHECIAT_PC0000813 hypothetical protein
YP_005718458.1	KEGG: rec:RHECIAT_PC0000817 putative transcriptional regulator protein, GntR family; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: GntR, C-terminal; HTH transcriptional regulator, GntR
YP_005718460.1	KEGG: rhi:NGR_c28570 Acr/RND family efflux transmembrane transporter; TIGRFAM: Hydrophobe/amphiphile efflux-1 HAE1; PFAM: Acriflavin resistance protein
YP_005718461.1	KEGG: rhi:NGR_c28560 efflux transporter, RND family, MFP subunit; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD
YP_005718462.1	PFAM: Uncharacterised protein family UPF0114; KEGG: rhi:NGR_c28550 hypothetical protein
YP_005718463.1	KEGG: rhi:NGR_c28540 amino acid/polyamine transporter I; TIGRFAM: Amino acid antiporter; PFAM: Amino acid permease domain
YP_005718464.1	KEGG: rhi:NGR_c28530 arginine/ornithine antiporter; TIGRFAM: Amino acid antiporter; PFAM: Amino acid permease domain
YP_005718465.1	TIGRFAM: Arginine deiminase; KEGG: rhi:NGR_c28520 arginine deiminase; PFAM: Amidinotransferase
YP_005718466.1	KEGG: rhi:NGR_c28510 hypothetical protein
YP_005718467.1	PFAM: Uncharacterised conserved protein UCP014873, membrane associated; KEGG: mlo:mlr6724 hypothetical protein
YP_005718468.1	KEGG: mlo:msr8479 hypothetical protein
YP_005718469.1	KEGG: mlo:mll6729 hypothetical protein
YP_005718470.1	PFAM: Uncharacterised protein family UPF0118; KEGG: oan:Oant_2449 hypothetical protein
YP_005718471.1	PFAM: Amidohydrolase 1; KEGG: smd:Smed_5232 amidohydrolase
YP_005718472.1	KEGG: smd:Smed_5770 TPR repeat-containing protein; TIGRFAM: Doubled CXXCH motif; SMART: Tetratricopeptide repeat
YP_005718473.1	PFAM: Haloacid dehalogenase-like hydrolase; KEGG: smd:Smed_5769 NapD-like protein
YP_005718474.1	PFAM: Sulfatase; KEGG: smd:Smed_1239 sulfatase
YP_005718475.1	KEGG: rle:pRL110222 putative transmembrane two-component sensor histidine kinase transcriptional regulator; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain
YP_005718476.1	KEGG: smd:Smed_5633 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal; SMART: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal
YP_005718477.1	KEGG: smd:Smed_5632 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain
YP_005718478.1	PFAM: Cation transporter; KEGG: smd:Smed_5285 cation transporter
YP_005718479.1	KEGG: smd:Smed_5742 signal transduction histidine kinase; PFAM: Signal transduction histidine kinase, HWE region; SMART: Signal transduction histidine kinase, HWE region
YP_005718480.1	KEGG: rhi:NGR_b01510 hypothetical protein
YP_005718481.1	PFAM: Transposase IS3/IS911family; KEGG: rhi:NGR_b01500 probable SyrB-like regulator
YP_005718482.1	manually curated; KEGG: rhi:NGR_b23220 hypothetical protein
YP_005718483.1	KEGG: rhi:NGR_b01480 hypothetical protein
YP_005718484.1	KEGG: smd:Smed_5674 hypothetical protein
YP_005718486.1	PFAM: Low temperature requirement A; KEGG: atu:Atu3918 hypothetical protein
YP_005718487.1	PFAM: ROSMUCR transcriptional regulator; KEGG: smd:Smed_6057 MucR family transcriptional regulator
YP_005718488.1	KEGG: rlg:Rleg_5665 hypothetical protein
YP_005718489.1	PFAM: Ureohydrolase; KEGG: smd:Smed_5245 arginase/agmatinase/formiminoglutamase
YP_005718490.1	TIGRFAM: Adenine deaminase; KEGG: smd:Smed_5277 adenine deaminase; PFAM: Amidohydrolase 1
YP_005718491.1	PFAM: Xanthine/uracil/vitamin C permease; KEGG: smd:Smed_5276 xanthine/uracil/vitamin C permease
YP_005718492.1	HAMAP: Adenine deaminase; KEGG: smd:Smed_5275 adenine deaminase; PFAM: Amidohydrolase 1
YP_005718493.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: smd:Smed_5274 LysR family transcriptional regulator
YP_005718495.1	PFAM: Isochorismatase-like; KEGG: smd:Smed_2598 isochorismatase hydrolase
YP_005718496.1	KEGG: smd:Smed_2599 AraC family transcriptional regulator; PFAM: HTH transcriptional regulator, AraC; ThiJ/PfpI; SMART: Helix-turn-helix, AraC type, DNA binding domain
YP_005718497.1	KEGG: atu:Atu2059 TetR family transcriptional regulator; TIGRFAM: Transcriptional repressor BetI; PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal
YP_005718498.1	KEGG: smd:Smed_5449 alpha/beta hydrolase fold; PFAM: Alpha/beta hydrolase fold-1
YP_005718499.1	PFAM: ABC-type glycine betaine transport system, substrate-binding domain; KEGG: rhi:NGR_c07950 hypothetical amino acid ABC-transporter permease protein
YP_005718500.1	KEGG: rsq:Rsph17025_2311 betaine aldehyde dehydrogenase; PFAM: Aldehyde dehydrogenase domain
YP_005718501.1	PFAM: Rieske [2Fe-2S] iron-sulphur domain; KEGG: gym:GYMC10_1269 Rieske (2Fe-2S) iron-sulphur domain protein
YP_005718502.1	PFAM: Amidohydrolase 2; KEGG: gym:GYMC10_1268 amidohydrolase 2
YP_005718503.1	PFAM: Oxidoreductase, FAD-binding domain; Ferredoxin; Oxidoreductase FAD/NAD(P)-binding; KEGG: bac:BamMC406_5014 oxidoreductase FAD-binding subunit
YP_005718504.1	PFAM: HTH transcriptional regulator, LysR; LysR, substrate-binding; KEGG: rhi:NGR_c21830 transcriptional regulator, LysR family
YP_005718505.1	KEGG: pde:Pden_4276 hypothetical protein; manually curated; PFAM: Uncharacterised protein family UPF0324, prokaryote
YP_005718506.1	PFAM: FAD-binding 9, siderophore-interacting; Siderophore-interacting protein; KEGG: rlg:Rleg_6722 siderophore-interacting protein
YP_005718507.1	PFAM: ABC transporter-like; KEGG: ske:Sked_19110 cobalamin/Fe3+-siderophore ABC transporter ATPase; SMART: ATPase, AAA+ type, core
YP_005718508.1	PFAM: ABC transporter permease protein; KEGG: oan:Oant_2825 transport system permease protein
YP_005718509.1	PFAM: ABC transporter permease protein; KEGG: oan:Oant_2826 transport system permease protein
YP_005718510.1	PFAM: Periplasmic binding protein; KEGG: oan:Oant_2827 periplasmic binding protein
YP_005718511.1	KEGG: pde:Pden_3521 TonB-dependent siderophore receptor; TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug
YP_005718512.1	KEGG: oan:Oant_2830 helix-turn-helix domain-containing protein; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain
YP_005718513.1	KEGG: smd:Smed_5214 hypothetical protein
YP_005718514.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: oan:Oant_3714 binding-protein-dependent transport systems inner membrane component
YP_005718515.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: bcs:BCAN_B0330 binding-protein-dependent transport systems inner membrane component
YP_005718516.1	SMART: ATPase, AAA+ type, core; TIGRFAM: Spermidine/putrescine ABC transporter ATP-binding subunit; KEGG: bcs:BCAN_B0329 polyamine ABC transporter, ATP-binding protein; PFAM: ABC transporter-like; Transport-associated OB, type 2
YP_005718517.1	PFAM: Bacterial extracellular solute-binding, family 1; KEGG: bmr:BMI_II321 spermidine/putrescine ABC transporter, periplasmic spermidine/putrescine-binding protein, putative
YP_005718518.1	KEGG: azl:AZL_b03940 transcriptional regulator; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: GntR, C-terminal
YP_005718519.1	PFAM: Aminoglycoside phosphotransferase; KEGG: mlo:mlr7168 homoserine kinase
YP_005718520.1	KEGG: vap:Vapar_5225 aminotransferase class-III; PFAM: Aminotransferase class-III
YP_005718521.1	PFAM: Protein of unknown function DUF937; KEGG: smd:Smed_4857 hypothetical protein
YP_005718522.1	PFAM: Transglycosylase-associated protein; KEGG: smd:Smed_4856 transglycosylase-associated protein
YP_005718523.1	KEGG: rle:RL1210 hypothetical protein
YP_005718524.1	KEGG: smd:Smed_5273 hypothetical protein
YP_005718526.1	PFAM: Protein of unknown function DUF900, hydrolase-like; KEGG: rhi:NGR_b16810 hypothetical protein
YP_005718527.1	PFAM: Transmembrane pair, bacterial; KEGG: smd:Smed_4434 transmembrane pair domain-containing protein
YP_005718528.1	PFAM: HTH transcriptional regulator, LysR; LysR, substrate-binding; KEGG: smd:Smed_4433 LysR family transcriptional regulator
YP_005718529.1	PFAM: Transposase, mutator type; KEGG: smd:Smed_6034 transposase mutator type
YP_005718530.1	KEGG: rva:Rvan_1248 hypothetical protein
YP_005718531.1	KEGG: smd:Smed_1683 sterile alpha motif-containing protein; PFAM: Sterile alpha motif, type 1; Adenylyl cyclase class-3/4/guanylyl cyclase; SMART: Sterile alpha motif domain; Adenylyl cyclase class-3/4/guanylyl cyclase
YP_005718532.1	KEGG: mlo:mlr2839 hypothetical protein
YP_005718533.1	KEGG: smd:Smed_5299 hypothetical protein
YP_005718535.1	KEGG: rhi:NGR_b12560 hypothetical protein
YP_005718536.1	PFAM: K+ potassium transporter; KEGG: smd:Smed_6370 K potassium transporter
YP_005718537.1	PFAM: Integrase, catalytic core; RNA polymerase sigma factor 70, region 4 type 2; KEGG: ret:RHE_PA00009 IS21/IS408/IS1162 insertion sequence transposase protein
YP_005718538.1	KEGG: smd:Smed_6464 IstB ATP binding domain-containing protein; PFAM: IstB-like ATP-binding protein; IstB-like ATP binding N-terminal; SMART: ATPase, AAA+ type, core
YP_005718540.1	KEGG: rhi:NGR_b15880 non-heme chloroperoxidase; PFAM: Alpha/beta hydrolase fold-1
YP_005718541.1	KEGG: atu:Atu5085 metallo-beta-lactamase; PFAM: Beta-lactamase-like; SMART: Beta-lactamase-like
YP_005718542.1	PFAM: Major facilitator superfamily, enterobactin exporter EntS; KEGG: rhi:NGR_b15890 putative MFS family transporter
YP_005718543.1	PFAM: Amidohydrolase 3; KEGG: rhi:NGR_b15910 putative periplasmic protein
YP_005718544.1	KEGG: rhi:NGR_b15920 hypothetical protein; TIGRFAM: XapX domain; PFAM: Protein of unknown function DUF1427
YP_005718545.1	PFAM: Isochorismatase-like; KEGG: rhi:NGR_b15930 probable hydrolase
YP_005718546.1	KEGG: rhi:NGR_b15940 putative AraC family transcriptional regulator; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain
YP_005718547.1	KEGG: rhi:NGR_b15950 putative AraC family transcriptional regulator; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain
YP_005718548.1	KEGG: rhi:NGR_b15960 putative AraC family transcriptional regulator; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain
YP_005718549.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: rhi:NGR_b15970 putative LysR family transcriptional regulator